Query 013981
Match_columns 432
No_of_seqs 199 out of 1717
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 03:20:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 2.6E-53 9E-58 439.7 20.4 326 2-402 88-422 (429)
2 3qe7_A Uracil permease; uracil 49.2 56 0.0019 33.0 9.0 76 209-286 44-131 (429)
3 4hyg_A Putative uncharacterize 12.2 6.4E+02 0.022 24.2 7.9 19 27-45 3-21 (301)
4 1bts_A BAND 3 anion transport 4.8 2.1E+02 0.0071 17.3 0.5 23 208-231 3-25 (26)
5 3bz1_X Photosystem II PSBX pro 4.7 5.2E+02 0.018 18.1 2.6 34 360-394 16-49 (50)
6 2kv5_A FST, putative uncharact 4.4 3.2E+02 0.011 17.5 1.2 14 30-43 8-21 (33)
7 3hd6_A Ammonium transporter RH 4.3 5.1E+02 0.017 26.6 3.4 33 370-402 409-445 (490)
8 3b9w_A Ammonium transporter fa 3.6 6.6E+02 0.023 25.0 3.5 30 371-400 333-362 (407)
9 3ov5_A VIRB7 (XAC2622), unchar 2.9 3.3E+02 0.011 21.0 0.3 29 395-423 19-47 (85)
10 2l4w_A Uncharacterized protein 2.8 3.3E+02 0.011 22.3 0.2 28 396-423 50-77 (120)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=2.6e-53 Score=439.69 Aligned_cols=326 Identities=21% Similarity=0.276 Sum_probs=265.9
Q ss_pred hhHHHHHHHHHHHHHHHHhh--hhH-HHHHHhcCchhHHHHHHHHHhhhhhhhcCCCCcc----ccchHHHHHHHHHHHH
Q 013981 2 RELQGAIIVGSIFQSILGFT--GLM-SLFLRLINPVVVAPTVAAIGLAFFSYGFPQAGSC----VEISIPQILLVLIFAL 74 (432)
Q Consensus 2 ~~~~Ga~ivaGl~~illg~~--gl~-~~l~~~fpP~V~G~vv~lIGlsl~~~g~~~~g~~----~~i~~~~~~l~~~~~l 74 (432)
|+++|+++++|+++++++++ ++. +|++|+|||+|+|+++++||+++.+.++++.+.. ...+.+...+.++..+
T Consensus 88 ~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~ 167 (429)
T 3qe7_A 88 EVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIISITTLA 167 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCCCCccccHHHHHHHHHHHH
Confidence 67899999999999999986 433 7999999999999999999999998876543210 0111222222222222
Q ss_pred HHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCccchhhhhhccccccccccccchhhhcccc
Q 013981 75 YLRGISVFGHHLFRIYAVPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKHAYTMKHCRTDVSNAWRTAAW 154 (432)
Q Consensus 75 ~l~~~~~~~~~~~r~~aiLigi~vG~~~a~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~v~~apw 154 (432)
.+..++++.|+++|++++|+|+++||++++.++. +|++ .+.++||
T Consensus 168 iii~~~~~~kg~~~~~aiLigivvg~~~a~~~G~----------------------------------~d~~-~v~~a~~ 212 (429)
T 3qe7_A 168 VTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGI----------------------------------VDTT-PIINAHW 212 (429)
T ss_dssp HHHHHHHSSSTTTTTHHHHHHHHHHHHHHHHHHH----------------------------------TTSS-HHHHSCS
T ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHHhcC----------------------------------CCcc-ccccccc
Confidence 2233577889999999999999999999999843 2343 4677899
Q ss_pred cccccccccccccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCccccccchhhhchHHHHhhhhCCCCCCCcc
Q 013981 155 VRIPYPLQWGIPIFHLRTSLIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGSSTL 234 (432)
Q Consensus 155 ~~~P~p~~~g~P~f~~~~il~~~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~l~~dGl~~ilaglfGt~~~~t~~ 234 (432)
+++|. |+.|+||+..+..++++++++++|++|++.++++.++++..++++.||++.+||++|+++|+||+ +|+|+|
T Consensus 213 ~~lP~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg-~p~Tt~ 288 (429)
T 3qe7_A 213 FALPT---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGS-TPNTTY 288 (429)
T ss_dssp SCCCC---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTC-CCEEEC
T ss_pred ccccC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCC-CCcchH
Confidence 99994 57799999999999999999999999999999999875443456789999999999999999996 999999
Q ss_pred cccchhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHhHhh--hhccCCCccceeE
Q 013981 235 TENVHTISITKVASRRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCFMWALIVAIGLSNL--QYTQSASFRNIMI 312 (432)
Q Consensus 235 s~n~G~i~~Tgv~Sr~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~llvlfg~i~~~Gi~~l--~~~~~~~~Rn~~I 312 (432)
+||+|+++.||++||++.+.+|+++++++++||+++++++||.||+||+.+++||++..+|+|++ ++.|++++||.+|
T Consensus 289 ~en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~~~Gi~~l~~~~v~~~~~rn~~i 368 (429)
T 3qe7_A 289 GENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLIL 368 (429)
T ss_dssp HHHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSHHHHHH
T ss_pred HHhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 7788888899999
Q ss_pred EeehhhhhcchhHHhhhcCcccccccCCccccccccCCCCccCCccchHHHHHHHhcchhHHHHHHHHHHHhcCCCCccc
Q 013981 313 VGASLFLGLSIPAYFQQYHPETSLILPSYFVPFAAASNGPVHTGSKQLDFAINALMSMNMVVTLLVAFILDNTVPGSRQE 392 (432)
Q Consensus 313 vg~sl~~Glg~p~~~~~~~p~~~~~lP~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~g~~vg~l~aiiLn~~~p~~~~~ 392 (432)
+++++.+|++.. +.| + +.+..||+.+|+++|++||+++|+++++
T Consensus 369 ~~~~l~~G~g~~-----~~~---------~----------------------~~~~~~gi~~~~~~ai~ln~~l~~~~~~ 412 (429)
T 3qe7_A 369 TSVILIIGVSGA-----KVN---------I----------------------GAAELKGMALATIVGIGLSLIFKLISVL 412 (429)
T ss_dssp HHHHHHHHHHCC-----CCC---------S----------------------SSCCCCHHHHHHHHHHHHHHHHTCCC--
T ss_pred HHHHHHHHHHHH-----HHh---------h----------------------hhhccCcHHHHHHHHHHHHHHhcCcccc
Confidence 999999999854 111 0 1166789999999999999999998888
Q ss_pred ccchhhhccc
Q 013981 393 RGVYIWSRAE 402 (432)
Q Consensus 393 rg~~~~~~~~ 402 (432)
|+.++.-..|
T Consensus 413 ~~~~~~~~~~ 422 (429)
T 3qe7_A 413 RPEEVVLDAE 422 (429)
T ss_dssp ----------
T ss_pred CCcceEecch
Confidence 7765554433
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=49.19 E-value=56 Score=33.02 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=46.2
Q ss_pred ccchhhhchHHHHhhhhCCCCCCCc-ccccchh----hhhccccch----hHHHHHHHHHHHHHHH-HHH--HHHHHhcC
Q 013981 209 SRGIGMEGFCSILAGLWGSGTGSST-LTENVHT----ISITKVASR----RAVQLGAVFMIVFSFV-GKV--GAILASIP 276 (432)
Q Consensus 209 ~r~l~~dGl~~ilaglfGt~~~~t~-~s~n~G~----i~~Tgv~Sr----~v~~~a~~~lillgl~-pk~--~alla~IP 276 (432)
+.++...|+++++=++++. .+.-. -..|-.. ....+ .+. -+...+|++.++++++ .|+ ..+...+|
T Consensus 44 ~~~l~~agi~Tllq~~~~~-~~lP~~~G~sfafi~~~~~i~~-~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~P 121 (429)
T 3qe7_A 44 ATVLLFNGIGTLLYLFICK-GKIPAYLGSSFAFISPVLLLLP-LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFP 121 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TCCCCCEEECGGGHHHHHHHGG-GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHcC-CCCCeEecChHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence 3688889999999888742 33322 1222222 11222 222 2357778888888876 333 37899999
Q ss_pred hhHHHHHHHH
Q 013981 277 QALAASILCF 286 (432)
Q Consensus 277 ~~V~gg~llv 286 (432)
..|+|.+...
T Consensus 122 pvviG~~i~~ 131 (429)
T 3qe7_A 122 PAAMGAIVAV 131 (429)
T ss_dssp HHHHHHHHHH
T ss_pred CeeeHHHHHH
Confidence 8888876543
No 3
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=12.18 E-value=6.4e+02 Score=24.17 Aligned_cols=19 Identities=0% Similarity=-0.031 Sum_probs=10.1
Q ss_pred HHHhcCchhHHHHHHHHHh
Q 013981 27 FLRLINPVVVAPTVAAIGL 45 (432)
Q Consensus 27 l~~~fpP~V~G~vv~lIGl 45 (432)
.+++.|...+..+...+++
T Consensus 3 ~~~~~~~~~~~~~~l~vql 21 (301)
T 4hyg_A 3 IRDWLPLLGMPLMLLFVQI 21 (301)
T ss_dssp -CCSSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666555555543
No 4
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=4.78 E-value=2.1e+02 Score=17.30 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=16.2
Q ss_pred cccchhhhchHHHHhhhhCCCCCC
Q 013981 208 VSRGIGMEGFCSILAGLWGSGTGS 231 (432)
Q Consensus 208 ~~r~l~~dGl~~ilaglfGt~~~~ 231 (432)
.++.+.+++++.++=++|++ -|.
T Consensus 3 v~E~i~s~ai~Gi~f~lf~g-QPL 25 (26)
T 1bts_A 3 VSELLISTAVQGILFALLGA-XXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred hhHHHHHHHHHHHHHHHHhc-ccC
Confidence 35678888999999999885 664
No 5
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=4.69 E-value=5.2e+02 Score=18.10 Aligned_cols=34 Identities=21% Similarity=0.112 Sum_probs=18.7
Q ss_pred hHHHHHHHhcchhHHHHHHHHHHHhcCCCCccccc
Q 013981 360 LDFAINALMSMNMVVTLLVAFILDNTVPGSRQERG 394 (432)
Q Consensus 360 ~~~~~~~~l~~g~~vg~l~aiiLn~~~p~~~~~rg 394 (432)
+.+++.+++.-+++++. ++..|=.+=..|+-+|.
T Consensus 16 L~NFl~SlvaG~vVvv~-i~~aLi~VSq~D~v~R~ 49 (50)
T 3bz1_X 16 LKGFFIGLLSGAVVLGL-TFAVLIAISQIDKVQRS 49 (50)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHTTCCCC--
T ss_pred HHHHHHHHHHHHHHHHH-HHHHheeeeccCccccC
Confidence 44556777776776666 44555444455555553
No 6
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=4.38 E-value=3.2e+02 Score=17.53 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=7.1
Q ss_pred hcCchhHHHHHHHH
Q 013981 30 LINPVVVAPTVAAI 43 (432)
Q Consensus 30 ~fpP~V~G~vv~lI 43 (432)
++-|+++|.++.++
T Consensus 8 IIaPivVGvvl~L~ 21 (33)
T 2kv5_A 8 VIAPIFVGLVLEMI 21 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555443
No 7
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=4.32 E-value=5.1e+02 Score=26.62 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=23.5
Q ss_pred chhHHHHHHHHHHHhcCC----CCcccccchhhhccc
Q 013981 370 MNMVVTLLVAFILDNTVP----GSRQERGVYIWSRAE 402 (432)
Q Consensus 370 ~g~~vg~l~aiiLn~~~p----~~~~~rg~~~~~~~~ 402 (432)
-.++.+.++..+||.+.. .+++.+|++.||-.+
T Consensus 409 ~a~v~~~ii~~iLk~~~~lRvs~e~e~~g~d~we~p~ 445 (490)
T 3hd6_A 409 MALMGGIIVGLILRLPFWGQPSDENCFEDAVYWEMPE 445 (490)
T ss_dssp HHHHHHHHHHHHHTSTTSCCCCTTSTTCGGGTSCCCT
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHhCCCceeecCc
Confidence 367788889999998864 345567777785544
No 8
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=3.57 E-value=6.6e+02 Score=25.03 Aligned_cols=30 Identities=3% Similarity=0.015 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHhcCCCCcccccchhhhc
Q 013981 371 NMVVTLLVAFILDNTVPGSRQERGVYIWSR 400 (432)
Q Consensus 371 g~~vg~l~aiiLn~~~p~~~~~rg~~~~~~ 400 (432)
..+++.++..+++.-.+++++.+|..-|+-
T Consensus 333 s~v~~~i~~~il~~r~~~e~e~~g~~~we~ 362 (407)
T 3b9w_A 333 ALIGGVIAGALIKLTGTTKQAYEDSHEFIH 362 (407)
T ss_dssp HHHHHHHHHHHHHTTCCCSSTTCGGGTSSS
T ss_pred HHHHHHHHHHHHhCCCCHHHHcCCcccccC
Confidence 567788888899983334444556556643
No 9
>3ov5_A VIRB7 (XAC2622), uncharacterized protein; type IV secretion system component, bacteri membrane, xanthomonas axonopodis PV citri; 1.04A {Xanthomonas axonopodis PV}
Probab=2.88 E-value=3.3e+02 Score=21.04 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=17.7
Q ss_pred chhhhccccCCCCCCCCccccCCccCccc
Q 013981 395 VYIWSRAEDLASDPSLQADYSLPRKVCRC 423 (432)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~y~~p~~~~~~ 423 (432)
+++|.+..+..-+=....+|.|+..+.++
T Consensus 19 LERWa~ds~m~l~Y~~~sDyTLy~~Vs~I 47 (85)
T 3ov5_A 19 LERWAADSNMQLSYNLPSDYTLIGPVSAI 47 (85)
T ss_dssp HHHHHHTTTCEEEECSSSCCBCCGGGGGC
T ss_pred HHHHHhhcCCeeEecCccceeeehhhhhh
Confidence 36787666554444456677777766543
No 10
>2l4w_A Uncharacterized protein; type IV secretion system, VIRB7, N0 domain, membrane protein xanthomonas, lipoprotein; NMR {Xanthomonas axonopodis PV}
Probab=2.84 E-value=3.3e+02 Score=22.31 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=17.5
Q ss_pred hhhhccccCCCCCCCCccccCCccCccc
Q 013981 396 YIWSRAEDLASDPSLQADYSLPRKVCRC 423 (432)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~y~~p~~~~~~ 423 (432)
++|.+..+..-+-....+|.||..+.++
T Consensus 50 eRWa~ds~m~l~Y~~~~DyTLy~~vs~I 77 (120)
T 2l4w_A 50 ERWAADSNMQLSYNLPSDYTLIGPVSAI 77 (120)
T ss_dssp HHHHHHTTCEEEECCSSCCBCCSTTTTC
T ss_pred HHHHhhcCCceeecCccceeeehhhhhh
Confidence 5676666554444456677777776654
Done!