Query 013981
Match_columns 432
No_of_seqs 199 out of 1717
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 03:20:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013981.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013981hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 20.9 1.7E+02 0.012 25.1 9.0 25 374-398 192-216 (447)
2 d1bdsa_ g.9.1.1 (A:) BDs-I def 4.1 2.1E+02 0.015 17.2 1.8 29 390-418 9-37 (43)
3 d1zs4a1 a.35.1.9 (A:4-81) Regu 3.7 2.3E+02 0.017 19.7 1.9 18 79-96 37-54 (78)
4 d2axta1 f.26.1.1 (A:10-344) Ph 3.7 4.3E+02 0.031 23.4 4.3 29 364-392 193-221 (335)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 2.6 5.3E+02 0.039 14.3 2.5 15 90-104 12-26 (32)
6 d3cx5c1 f.32.1.1 (C:262-385) M 2.6 5.1E+02 0.037 19.2 3.3 41 268-309 17-57 (124)
7 d1q90g_ f.23.26.1 (G:) PetG su 2.1 6.7E+02 0.049 13.9 2.3 6 261-266 10-15 (30)
8 d1kj6a_ g.9.1.1 (A:) Beta-defe 1.9 2E+02 0.015 17.7 -0.3 14 416-429 2-15 (45)
9 d1rutx4 g.39.1.3 (X:114-146) L 1.6 3.1E+02 0.023 15.8 0.2 8 383-390 7-14 (33)
10 d1q90m_ f.23.25.1 (M:) PetM su 1.5 7.6E+02 0.055 13.9 1.9 12 37-48 7-18 (34)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=20.86 E-value=1.7e+02 Score=25.15 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCCCcccccchhh
Q 013981 374 VTLLVAFILDNTVPGSRQERGVYIW 398 (432)
Q Consensus 374 vg~l~aiiLn~~~p~~~~~rg~~~~ 398 (432)
+..+.+++.-...+..+++++....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (447)
T d1pw4a_ 192 CAILVALFAFAMMRDTPQSCGLPPI 216 (447)
T ss_dssp HHHHHHHHHHHHCCCSSTTTCCCSC
T ss_pred hHHHHHHHHHHhcccchhhcccchh
Confidence 3444555555556655555555443
No 2
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=4.11 E-value=2.1e+02 Score=17.16 Aligned_cols=29 Identities=17% Similarity=0.107 Sum_probs=18.0
Q ss_pred cccccchhhhccccCCCCCCCCccccCCc
Q 013981 390 RQERGVYIWSRAEDLASDPSLQADYSLPR 418 (432)
Q Consensus 390 ~~~rg~~~~~~~~~~~~~~~~~~~y~~p~ 418 (432)
+..||--|-.+......---..++|+||-
T Consensus 9 kpgrgdlwilrgtcpggygytsncykwpn 37 (43)
T d1bdsa_ 9 KPGRGDLWILRGTCPGGYGYTSNCYKWPN 37 (43)
T ss_dssp CCSCCEEECSCSSCCTTTCCCCEEEETTE
T ss_pred CCCCCcEEEEecccCCCcccccccccCCc
Confidence 44566544455555555555677999984
No 3
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=3.72 E-value=2.3e+02 Score=19.75 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=14.9
Q ss_pred HHhhhcchhhhhhHHHHH
Q 013981 79 ISVFGHHLFRIYAVPLSV 96 (432)
Q Consensus 79 ~~~~~~~~~r~~aiLigi 96 (432)
++.|.++++.+.++++++
T Consensus 37 iSRwK~~f~~q~smlLAv 54 (78)
T d1zs4a1 37 ISRWKRDWIPKFSMLLAV 54 (78)
T ss_dssp HHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 467888999999988876
No 4
>d2axta1 f.26.1.1 (A:10-344) Photosystem Q(B) protein 1, PsbA1 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.69 E-value=4.3e+02 Score=23.40 Aligned_cols=29 Identities=0% Similarity=0.159 Sum_probs=22.6
Q ss_pred HHHHhcchhHHHHHHHHHHHhcCCCCccc
Q 013981 364 INALMSMNMVVTLLVAFILDNTVPGSRQE 392 (432)
Q Consensus 364 ~~~~l~~g~~vg~l~aiiLn~~~p~~~~~ 392 (432)
+.-++++.++.+.==+.+++.++|++.++
T Consensus 193 Ia~~fG~aLl~AMHGatVls~l~~e~~e~ 221 (335)
T d2axta1 193 VAGVFGGALFCAMHGSLVTSSLIRETTET 221 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTBBCCSCSS
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcCCCc
Confidence 44577778888888889999999877664
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.64 E-value=5.3e+02 Score=14.30 Aligned_cols=15 Identities=13% Similarity=0.202 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHH
Q 013981 90 YAVPLSVMIIWAYAF 104 (432)
Q Consensus 90 ~aiLigi~vG~~~a~ 104 (432)
.+...|+.+|.+++.
T Consensus 12 ialffgiavgiifai 26 (32)
T d2e74e1 12 IALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhheeeE
Confidence 345667777776653
No 6
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.61 E-value=5.1e+02 Score=19.19 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=22.5
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHhHhhhhccCCCccc
Q 013981 268 VGAILASIPQALAASILCFMWALIVAIGLSNLQYTQSASFRN 309 (432)
Q Consensus 268 ~~alla~IP~~V~gg~llvlfg~i~~~Gi~~l~~~~~~~~Rn 309 (432)
+=+++-+||+-. ||++....+.+...-+-.+.+.+..+.|.
T Consensus 17 ~YaiLRsiP~k~-~Gvl~~~~si~il~~lP~l~~s~~~s~~~ 57 (124)
T d3cx5c1 17 FYAILRSIPDKL-LGVITMFAAILVLLVLPFTDRSVVRGNTF 57 (124)
T ss_dssp HHHHHHTSSSHH-HHHHHHHHHHHGGGGHHHHCCCSSSSSTT
T ss_pred HHHHHhcCCcch-hhhHHHHHHHHHHHHHHHHhhhhhhhcch
Confidence 457899999885 45444434444443444444444444443
No 7
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.05 E-value=6.7e+02 Score=13.94 Aligned_cols=6 Identities=33% Similarity=0.534 Sum_probs=3.0
Q ss_pred HHHHHH
Q 013981 261 VFSFVG 266 (432)
Q Consensus 261 llgl~p 266 (432)
++|++|
T Consensus 10 vlGlip 15 (30)
T d1q90g_ 10 VLGLVP 15 (30)
T ss_dssp HHHHHH
T ss_pred HHhhHH
Confidence 445554
No 8
>d1kj6a_ g.9.1.1 (A:) Beta-defensin, BD {Human (Homo sapiens), HBD3 [TaxId: 9606]}
Probab=1.87 E-value=2e+02 Score=17.74 Aligned_cols=14 Identities=14% Similarity=0.487 Sum_probs=9.9
Q ss_pred CCccCccccccccc
Q 013981 416 LPRKVCRCFCCARR 429 (432)
Q Consensus 416 ~p~~~~~~~~~~~~ 429 (432)
.+..++|+++++|.
T Consensus 2 Iin~lqryyCriR~ 15 (45)
T d1kj6a_ 2 IINTLQKYYCRVRG 15 (45)
T ss_dssp CCCCCTTTHHHHHC
T ss_pred hhhhhhhhheeecC
Confidence 45678888887763
No 9
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.59 E-value=3.1e+02 Score=15.76 Aligned_cols=8 Identities=50% Similarity=0.999 Sum_probs=5.5
Q ss_pred HhcCCCCc
Q 013981 383 DNTVPGSR 390 (432)
Q Consensus 383 n~~~p~~~ 390 (432)
|++.|+||
T Consensus 7 n~LVPGDR 14 (33)
T d1rutx4 7 NRLVPGDR 14 (33)
T ss_dssp CBCCTTCE
T ss_pred ccccCCce
Confidence 56777765
No 10
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.55 E-value=7.6e+02 Score=13.91 Aligned_cols=12 Identities=8% Similarity=0.504 Sum_probs=5.7
Q ss_pred HHHHHHHHhhhh
Q 013981 37 APTVAAIGLAFF 48 (432)
Q Consensus 37 G~vv~lIGlsl~ 48 (432)
|+-..++|+.+.
T Consensus 7 gta~tmig~tl~ 18 (34)
T d1q90m_ 7 GTALTMVGMTLV 18 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 444455554443
Done!