Query 013982
Match_columns 432
No_of_seqs 404 out of 2523
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 00:41:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013982.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013982hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1262 FAD-binding protein DI 100.0 2.7E-72 5.8E-77 536.8 14.9 417 3-431 5-422 (543)
2 PLN02805 D-lactate dehydrogena 100.0 9.4E-36 2E-40 312.1 23.6 188 57-257 137-332 (555)
3 PRK11230 glycolate oxidase sub 100.0 1.1E-33 2.3E-38 294.8 26.5 188 58-257 60-255 (499)
4 TIGR00387 glcD glycolate oxida 100.0 7.8E-33 1.7E-37 283.3 22.6 188 58-257 2-198 (413)
5 TIGR01676 GLDHase galactonolac 100.0 1.4E-31 2.9E-36 276.8 24.1 222 43-290 49-273 (541)
6 PLN02441 cytokinin dehydrogena 100.0 2.1E-31 4.5E-36 275.7 25.5 219 46-281 55-284 (525)
7 TIGR01678 FAD_lactone_ox sugar 100.0 1.3E-30 2.9E-35 267.3 23.7 222 44-291 3-228 (438)
8 TIGR01679 bact_FAD_ox FAD-link 100.0 3.2E-30 6.9E-35 264.0 21.0 219 46-293 2-224 (419)
9 TIGR01677 pln_FAD_oxido plant- 100.0 1.2E-29 2.7E-34 265.5 24.4 228 40-287 16-253 (557)
10 COG0277 GlcD FAD/FMN-containin 100.0 1.4E-29 3E-34 262.9 19.8 185 57-251 35-225 (459)
11 PLN02465 L-galactono-1,4-lacto 100.0 2.2E-28 4.8E-33 254.9 23.3 220 43-290 84-308 (573)
12 PRK11282 glcE glycolate oxidas 100.0 3E-28 6.5E-33 242.1 18.4 182 62-257 3-193 (352)
13 KOG1231 Proteins containing th 99.9 9.2E-24 2E-28 207.5 12.1 163 59-233 69-240 (505)
14 KOG4730 D-arabinono-1, 4-lacto 99.9 2.2E-22 4.7E-27 197.9 17.9 208 56-288 52-262 (518)
15 KOG1232 Proteins containing th 99.9 1.1E-22 2.5E-27 195.4 12.7 199 49-255 82-288 (511)
16 PRK11183 D-lactate dehydrogena 99.9 2.5E-21 5.3E-26 198.1 14.3 193 57-257 42-290 (564)
17 PF01565 FAD_binding_4: FAD bi 99.9 1.4E-21 2.9E-26 170.5 10.4 132 59-199 6-139 (139)
18 PRK13905 murB UDP-N-acetylenol 99.8 5.4E-20 1.2E-24 180.4 12.4 148 58-232 35-193 (298)
19 KOG1233 Alkyl-dihydroxyacetone 99.8 4.5E-19 9.8E-24 171.0 12.7 199 47-257 151-364 (613)
20 PRK12436 UDP-N-acetylenolpyruv 99.7 1E-17 2.2E-22 164.4 12.4 147 58-231 41-197 (305)
21 PRK14652 UDP-N-acetylenolpyruv 99.7 1.2E-17 2.6E-22 163.5 12.8 147 59-232 41-196 (302)
22 PRK13906 murB UDP-N-acetylenol 99.7 2.2E-17 4.8E-22 162.0 12.5 146 58-230 41-196 (307)
23 PRK13903 murB UDP-N-acetylenol 99.7 3.7E-17 8E-22 163.0 12.9 147 59-232 38-197 (363)
24 TIGR00179 murB UDP-N-acetyleno 99.7 5.9E-17 1.3E-21 157.6 12.2 148 58-231 17-175 (284)
25 PRK14649 UDP-N-acetylenolpyruv 99.6 2E-15 4.2E-20 147.6 12.1 150 59-231 26-192 (295)
26 PRK14653 UDP-N-acetylenolpyruv 99.6 2.8E-15 6.1E-20 146.1 12.4 145 59-232 39-194 (297)
27 COG0812 MurB UDP-N-acetylmuram 99.6 1.6E-14 3.5E-19 138.4 12.8 147 59-231 26-183 (291)
28 PRK14650 UDP-N-acetylenolpyruv 99.6 1.6E-14 3.4E-19 140.5 12.2 146 59-232 38-195 (302)
29 PRK00046 murB UDP-N-acetylenol 99.5 3.1E-14 6.8E-19 140.5 11.7 146 59-231 26-188 (334)
30 PRK14648 UDP-N-acetylenolpyruv 99.5 2E-13 4.3E-18 134.7 11.9 148 59-232 35-237 (354)
31 PRK14651 UDP-N-acetylenolpyruv 99.3 6.8E-12 1.5E-16 120.5 11.0 134 60-231 26-170 (273)
32 PRK13904 murB UDP-N-acetylenol 99.0 8.1E-10 1.8E-14 105.2 8.7 120 90-232 33-160 (257)
33 PRK09799 putative oxidoreducta 94.4 0.044 9.6E-07 52.8 4.1 139 63-227 8-155 (258)
34 PF00941 FAD_binding_5: FAD bi 93.0 0.017 3.8E-07 52.0 -1.4 63 105-167 44-115 (171)
35 TIGR03312 Se_sel_red_FAD proba 91.5 0.2 4.4E-06 48.2 3.9 95 63-166 7-108 (257)
36 TIGR02963 xanthine_xdhA xanthi 91.1 0.31 6.7E-06 51.1 5.1 150 61-228 196-358 (467)
37 PRK09971 xanthine dehydrogenas 88.5 0.5 1.1E-05 46.3 4.0 151 62-230 9-175 (291)
38 TIGR03199 pucC xanthine dehydr 88.4 0.46 1E-05 45.9 3.6 97 64-166 2-108 (264)
39 TIGR03195 4hydrxCoA_B 4-hydrox 85.9 0.6 1.3E-05 46.4 2.9 62 104-166 45-116 (321)
40 PLN02906 xanthine dehydrogenas 85.1 1.9 4E-05 51.1 6.8 98 62-166 233-349 (1319)
41 PF02913 FAD-oxidase_C: FAD li 83.5 0.85 1.8E-05 42.6 2.7 49 371-420 104-156 (248)
42 COG4630 XdhA Xanthine dehydrog 80.7 2.9 6.4E-05 41.9 5.2 100 106-214 246-354 (493)
43 COG4802 FtrB Ferredoxin-thiore 78.1 0.91 2E-05 36.7 0.7 28 402-429 29-56 (110)
44 PLN00192 aldehyde oxidase 76.2 5.1 0.00011 47.6 6.4 99 62-166 238-351 (1344)
45 TIGR02969 mam_aldehyde_ox alde 73.5 4.6 9.9E-05 47.9 5.1 61 105-166 278-357 (1330)
46 TIGR03752 conj_TIGR03752 integ 56.9 15 0.00032 38.3 4.4 49 142-200 278-327 (472)
47 CHL00165 ftrB ferredoxin thior 44.6 11 0.00025 31.4 1.1 26 404-429 38-63 (116)
48 PF02228 Gag_p19: Major core p 43.9 9.4 0.0002 29.4 0.5 14 413-426 51-64 (92)
49 PHA02793 hypothetical protein; 33.3 17 0.00036 26.1 0.4 14 417-431 28-41 (66)
50 PLN00107 FAD-dependent oxidore 31.0 29 0.00062 33.3 1.6 31 396-426 66-96 (257)
51 PF02943 FeThRed_B: Ferredoxin 25.2 33 0.00071 28.4 0.8 25 405-429 29-53 (108)
52 PTZ00378 hypothetical protein; 20.2 1.9E+02 0.004 30.8 5.3 71 4-78 349-425 (518)
No 1
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=100.00 E-value=2.7e-72 Score=536.82 Aligned_cols=417 Identities=50% Similarity=0.870 Sum_probs=375.5
Q ss_pred CCCCCCCccchhhHHHHHhhccceEEEEEEccCCccchhhhhccccccccccccCCCCCCHHHHHHHHHHHHHhCC-CCC
Q 013982 3 DLEAPLRPKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQKEHDENVKKVVKRLKERNP-SKD 81 (432)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~w~~~~~~~~~~p~~~~~v~~iv~~~~~~~~-~~~ 81 (432)
-.+-|.+++||. ..+++|||+|+++++||.|+.|+..++.|++|... ...+.-.|.+.|+.|++.+++++. .+.
T Consensus 5 ~~~~~~k~~~Wv---~~~~~fRwv~Vv~f~LP~S~lF~~~i~~r~~~~~~--~ssa~~~H~qrVkkIqkqlkew~d~s~k 79 (543)
T KOG1262|consen 5 LGVVKAKAIRWV---EYFVHFRWVFVVLFLLPLSFLFDLFIYFRIWLVRK--LSSAPREHQQRVKKIQKQLKEWLDDSEK 79 (543)
T ss_pred hhhhhhhhhhHH---HHHhhcceEEEehhhhhHHHHHHHHHHHHHHHHHH--hccCchHHHHHHHHHHHHHHhhcccccc
Confidence 345677888883 38899999999999999999999999999955432 233333599999999999999765 567
Q ss_pred ceeeecCCCceeecccCCcccCCCeEEEEcCCCCCceEEeCCCcEEEEcCCccHHHHHHHHccCCceeeeecCCCccccc
Q 013982 82 GLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVG 161 (432)
Q Consensus 82 ~~~~~g~~~~~~~G~~~~~~~~~~gvvIdl~~l~~i~~id~~~~~v~v~~G~~~~~l~~~l~~~Gl~~~~~p~~~~~tvG 161 (432)
...|++|.+|+++|.+...+... .--|++..|.+|+++|.++.+|+|||+++++++.++|.+.|+++|+.|.....|||
T Consensus 80 ~~lctaRp~Wltvs~r~~dykk~-h~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~EldDlTvG 158 (543)
T KOG1262|consen 80 KPLCTARPGWLTVSTRFFDYKKC-HHQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPELDDLTVG 158 (543)
T ss_pred CcccccCCCeEEEEEecchhhhh-cccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeecccccceec
Confidence 79999999999999888776544 34566777788999999999999999999999999999999999999999999999
Q ss_pred ccccCccCCCCCcccCccccceeEEEEEecCCcEEEEcCCCCCcchhhhcccccCCceEEEEEEEEeEEcCceEEEEEec
Q 013982 162 GLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKP 241 (432)
Q Consensus 162 G~i~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~~~~~~dL~~a~~gs~G~lGiVt~~~lkl~p~~~~~~~~~~~ 241 (432)
|.|+|.|+.++|++||++.|.+.+.|||++||+++++.++++++|||+|+..|+||+|+.+.+|+|+.|..+++.++|.+
T Consensus 159 GLinG~Gies~ShkyGlfq~~~~aYEvVladGelv~~t~dne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvkltyip 238 (543)
T KOG1262|consen 159 GLINGVGIESSSHKYGLFQHICTAYEVVLADGELVRVTPDNEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLTYIP 238 (543)
T ss_pred ceeeecccccccchhhhHHhhhheeEEEecCCeEEEecCCcccCceEEEcccccCchheeeeeEEEEEeccceEEEEEEe
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCceEEEEecCCceEEEEeeecChHHhhhhcccccccccccccchhhhhhh
Q 013982 242 VASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAAT 321 (432)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 321 (432)
. ..+++.++.+.+... +.+.....++|+++++|++.++++|.|.+++..+..+. +++|.++|+++||||.|++.
T Consensus 239 ~-~~l~e~c~k~~e~~~----dsdkntk~~dfvE~liyn~~egviMvG~fad~~dak~~-~kvN~vgwwyKpWFykHvet 312 (543)
T KOG1262|consen 239 V-HGLDEYCKKITELSG----DSDKNTKNADFVEGLIYNKNEGVIMVGNFADKVDAKSN-AKVNDVGWWYKPWFYKHVET 312 (543)
T ss_pred c-ccHHHHHHHHHhhcc----cccccccccchhheeeecCCccEEEEEeccCccccccc-cccccchhhhhhHHHHHHHH
Confidence 5 469999999988642 22222235799999999999999999999986665443 68999999999999999999
Q ss_pred hhhcCccccccccccccccccccccccccccccCCchhHHHHhhcccCCchhhhhhhhcccchhcccCCcceEEEeeccc
Q 013982 322 ALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPL 401 (432)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~r~~~~~ai~~~~~~~~v~eDv~vP~ 401 (432)
.+..+...+|+|+++||+||.|+.||+.+.++|||++++||++.+|++|+++.+++++++.+++.++.+.+|+||+.||+
T Consensus 313 ~lkkge~~EYIPlr~YyhRHtrsifWe~~~iiPFGn~~~FRyllgWl~PPKia~LKaTt~ealRkly~~~hV~QDmlvPl 392 (543)
T KOG1262|consen 313 FLKKGEGEEYIPLRSYYHRHTRSIFWELEDIIPFGNNPVFRYLLGWLCPPKIAFLKATTGEALRKLYFAKHVFQDMLVPL 392 (543)
T ss_pred HHhcCCCceeeeHHHHHHhccceeEEeeeeeeecCCcHHHHHHHHhcCCChHHHhhcccHHHHHHHHHHHHHHHHhhccH
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhcCCcceeeccccCCCCC
Q 013982 402 YKVGDALEWQHREVEVNMSFSAPAFNYSFS 431 (432)
Q Consensus 402 ~~l~e~i~~~~~~~~~~p~~~~p~~~~~~~ 431 (432)
.+|.|+++.++++++.||+||||+++|+|.
T Consensus 393 ~kl~eald~~hke~evYPiwlcP~~l~~qp 422 (543)
T KOG1262|consen 393 DKLKEALDTFHKEFEVYPIWLCPFRLYSQP 422 (543)
T ss_pred HHHHHHHHHHHhhheeeeeeeeeeeccCCC
Confidence 999999999999999999999999999984
No 2
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=9.4e-36 Score=312.07 Aligned_cols=188 Identities=20% Similarity=0.270 Sum_probs=161.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCc----ccCCCeEEEEcCCCCCceEEeCCCcEEEEcCC
Q 013982 57 KRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVD----YKRARHFEVDLSAFRNILDIDKDRMIAKVEPL 132 (432)
Q Consensus 57 ~~~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~----~~~~~gvvIdl~~l~~i~~id~~~~~v~v~~G 132 (432)
...|.+++||+++++++++++. |+.+.|+|++. ...++|++|||++||+|+++|+++.+++||||
T Consensus 137 Vv~P~s~eeV~~ivk~a~~~~i-----------pv~prGgGts~~G~~~~~~ggivIdl~~mn~I~~id~~~~~vtVeaG 205 (555)
T PLN02805 137 VVFPRSEEEVSKIVKSCNKYKV-----------PIVPYGGATSIEGHTLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPG 205 (555)
T ss_pred EEEcCCHHHHHHHHHHHHHCCC-----------cEEEECCCCCCCCCccCCCCEEEEEccCCCCeEEEeCCCCEEEEeCC
Confidence 3489999999999999999885 44444444432 12357999999999999899999999999999
Q ss_pred ccHHHHHHHHccCCceeeeecCCCcccccccccCccCCCCCcccCccccceeEEEEEecCCcEEEEcCC----CCCcchh
Q 013982 133 VNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKD----NEYKDLF 208 (432)
Q Consensus 133 ~~~~~l~~~l~~~Gl~~~~~p~~~~~tvGG~i~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~~----~~~~dL~ 208 (432)
+++.+|+++|.++|+++|++|+ +.+||||++++++.|..+.+||.++|+|++++||++||++++++.. ..++||+
T Consensus 206 v~~~~L~~~L~~~Gl~~p~~p~-~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~ 284 (555)
T PLN02805 206 IGWLELNEYLEPYGLFFPLDPG-PGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLT 284 (555)
T ss_pred cCHHHHHHHHHHcCCEeCCCCc-cccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHH
Confidence 9999999999999999998876 5689999999999998899999999999999999999999987422 2578999
Q ss_pred hhcccccCCceEEEEEEEEeEEcCceEEEEEeccCCCHHHHHHHHHHHh
Q 013982 209 YAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSF 257 (432)
Q Consensus 209 ~a~~gs~G~lGiVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (432)
|+++||+|+|||||+++||++|.|+.....+. .|++++++.+++.++.
T Consensus 285 ~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~-~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 285 RLVIGSEGTLGVITEVTLRLQKIPQHSVVAMC-NFPTIKDAADVAIATM 332 (555)
T ss_pred HHhccCCCceEEEEEEEEEeecCCcceEEEEE-EcCCHHHHHHHHHHHH
Confidence 99999999999999999999999986554444 4789999999988864
No 3
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=1.1e-33 Score=294.81 Aligned_cols=188 Identities=22% Similarity=0.243 Sum_probs=162.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCc----ccCCCeEEEEcCCCCCceEEeCCCcEEEEcCCc
Q 013982 58 RQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVD----YKRARHFEVDLSAFRNILDIDKDRMIAKVEPLV 133 (432)
Q Consensus 58 ~~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~----~~~~~gvvIdl~~l~~i~~id~~~~~v~v~~G~ 133 (432)
..|.++++|++++++|++++. |+.+.|+|++. ...++|++|||++||+|+++|+++++++||||+
T Consensus 60 v~P~s~eeV~~iv~~a~~~~i-----------pv~~rG~Gt~~~gg~~~~~~gividl~~ln~I~~id~~~~~v~VeaGv 128 (499)
T PRK11230 60 VLPKQMEQVQALLAVCHRLRV-----------PVVARGAGTGLSGGALPLEKGVLLVMARFNRILDINPVGRRARVQPGV 128 (499)
T ss_pred EeeCCHHHHHHHHHHHHHcCC-----------eEEEECCCcCcCCCcccCCCcEEEEcccCCCceEEcCCCCEEEEcCCc
Confidence 389999999999999999885 44444444321 123578999999999999999999999999999
Q ss_pred cHHHHHHHHccCCceeeeecC-CCcccccccccCccCCCCCcccCccccceeEEEEEecCCcEEEEcCC---CCCcchhh
Q 013982 134 NMGQISRATCPMNLSLAVVAE-LDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKD---NEYKDLFY 209 (432)
Q Consensus 134 ~~~~l~~~l~~~Gl~~~~~p~-~~~~tvGG~i~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~~---~~~~dL~~ 209 (432)
++.+|+++|.++|++++++|+ ...+||||++++++.|+.+.+||.+.|+|++++||++||++++++.. ..++||+|
T Consensus 129 ~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~ 208 (499)
T PRK11230 129 RNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLA 208 (499)
T ss_pred cHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHh
Confidence 999999999999999887884 56799999998888888899999999999999999999999998743 25899999
Q ss_pred hcccccCCceEEEEEEEEeEEcCceEEEEEeccCCCHHHHHHHHHHHh
Q 013982 210 AIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSF 257 (432)
Q Consensus 210 a~~gs~G~lGiVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (432)
+++||+|+|||||++|||++|.|+.....+. .|++++++.+++.++.
T Consensus 209 l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~-~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 209 LFTGSEGMLGVVTEVTVKLLPKPPVARVLLA-SFDSVEKAGLAVGDII 255 (499)
T ss_pred hhccCCCccEEEEEEEEEEEcCCcceEEEEE-ECCCHHHHHHHHHHHH
Confidence 9999999999999999999999986554444 4789999999988875
No 4
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=100.00 E-value=7.8e-33 Score=283.32 Aligned_cols=188 Identities=25% Similarity=0.267 Sum_probs=161.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCc----ccCCCeEEEEcCCCCCceEEeCCCcEEEEcCCc
Q 013982 58 RQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVD----YKRARHFEVDLSAFRNILDIDKDRMIAKVEPLV 133 (432)
Q Consensus 58 ~~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~----~~~~~gvvIdl~~l~~i~~id~~~~~v~v~~G~ 133 (432)
..|.++++|+++++++++++. |+.+.|+|++. ...+++++|||++||+|+++|+++.+++||||+
T Consensus 2 v~P~s~eev~~iv~~a~~~~i-----------~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn~i~~id~~~~~v~veaGv 70 (413)
T TIGR00387 2 VFPKNTEQVARILKLCHEHRI-----------PIVPRGAGTGLSGGALPEEGGLVLVFKHMNKILEIDVVNLTAVVQPGV 70 (413)
T ss_pred CCCCCHHHHHHHHHHHHHcCC-----------cEEEECCCCCCCCCccCCCCeEEEEhHHcCceeEEcCCCCEEEEcCCc
Confidence 358999999999999999886 44455555442 223578999999999999999999999999999
Q ss_pred cHHHHHHHHccCCceeeeecC-CCcccccccccCccCCCCCcccCccccceeEEEEEecCCcEEEEcC----CCCCcchh
Q 013982 134 NMGQISRATCPMNLSLAVVAE-LDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATK----DNEYKDLF 208 (432)
Q Consensus 134 ~~~~l~~~l~~~Gl~~~~~p~-~~~~tvGG~i~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~----~~~~~dL~ 208 (432)
++.+|+++|.++|+++|+.|+ ...+||||++++++.|..+.+||.+.|+|++++||++||++++++. ...++||+
T Consensus 71 ~~~~l~~~l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~ 150 (413)
T TIGR00387 71 RNLELEQAVEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLT 150 (413)
T ss_pred cHHHHHHHHHHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChh
Confidence 999999999999999987775 4578999999888888888999999999999999999999999863 23578999
Q ss_pred hhcccccCCceEEEEEEEEeEEcCceEEEEEeccCCCHHHHHHHHHHHh
Q 013982 209 YAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSF 257 (432)
Q Consensus 209 ~a~~gs~G~lGiVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (432)
++++||+|+|||||+++||++|.|+....... .|++++++++++.++.
T Consensus 151 ~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~-~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 151 GLFVGSEGTLGIVTEATLKLLPKPENIVVALA-FFDSIEKAMQAVYDII 198 (413)
T ss_pred hhcccCCccceEEEEEEEEeecCCCccEEEEE-ECCCHHHHHHHHHHHH
Confidence 99999999999999999999999985543333 4789999999988775
No 5
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=1.4e-31 Score=276.84 Aligned_cols=222 Identities=18% Similarity=0.247 Sum_probs=181.8
Q ss_pred hhccccccccccccCC---CCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCCCeEEEEcCCCCCceE
Q 013982 43 IYLGDVKSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILD 119 (432)
Q Consensus 43 ~~~~~~w~~~~~~~~~---~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~~gvvIdl~~l~~i~~ 119 (432)
..++| |+....+.|. .|.+.++|+++++.+++++. ...++|++|++. +.+.+++.+|||++||+|++
T Consensus 49 ~~w~N-Wsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~--~Vr~~GsGhS~s-------g~a~t~g~lldL~~ln~Vl~ 118 (541)
T TIGR01676 49 HTVSN-WSGTHEVLTRTFHQPEAIEELEGIVKQANEKKA--RIRPVGSGLSPN-------GIGLSRAGMVNLALMDKVLE 118 (541)
T ss_pred ccccc-cCCccccCcceEECCCCHHHHHHHHHHHHHcCC--cEEEECCCcCCC-------CcccCCCeEEEhhhCCCCEE
Confidence 34578 9888766665 78999999999999988774 233344444332 23334556899999999999
Q ss_pred EeCCCcEEEEcCCccHHHHHHHHccCCceeeeecCCCcccccccccCccCCCCCcccCccccceeEEEEEecCCcEEEEc
Q 013982 120 IDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRAT 199 (432)
Q Consensus 120 id~~~~~v~v~~G~~~~~l~~~l~~~Gl~~~~~p~~~~~tvGG~i~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~ 199 (432)
+|+++++|+|+||+++.+|.+.|.++|+++++.|++..+||||+++.|++| .+.+||.++|+|+++++|++||++++++
T Consensus 119 vD~~~~tVtV~AG~~l~~L~~~L~~~Glal~n~gsi~~~TIGGaiatgtHG-tg~~~G~l~d~V~~l~lVta~G~vv~~s 197 (541)
T TIGR01676 119 VDEEKKRVRVQAGIRVQQLVDAIKEYGITLQNFASIREQQIGGIIQVGAHG-TGAKLPPIDEQVIAMKLVTPAKGTIEIS 197 (541)
T ss_pred EcCCCCEEEEcCCCCHHHHHHHHHHcCCEeccCCCCCCceEccccccCCcC-CCCCCCCHHHhEEEEEEEECCCCEEEEC
Confidence 999999999999999999999999999999988899999999999765555 5678999999999999999999999999
Q ss_pred CCCCCcchhhhcccccCCceEEEEEEEEeEEcCceEEEEEeccCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCceEEEEe
Q 013982 200 KDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIY 279 (432)
Q Consensus 200 ~~~~~~dL~~a~~gs~G~lGiVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 279 (432)
++ +++|||||.+||+|+|||||++|||++|.+......+. .+++++++.+.++.+ ..++++++++
T Consensus 198 ~~-~~pdLF~AargslG~LGVItevTLr~~Pa~~l~~~~~~---~~~~e~l~~~~~~~~-----------~~~h~~f~wf 262 (541)
T TIGR01676 198 KD-KDPELFFLARCGLGGLGVVAEVTLQCVERQELVEHTFI---SNMKDIKKNHKKFLA-----------DNKHVKYLHI 262 (541)
T ss_pred CC-CCHHHHHHHhcCCCceEeEEEEEEEEEeccceeEEEEe---cCHHHHHHHHHHHHh-----------cCCcEEEEEE
Confidence 86 89999999999999999999999999999987665554 368999999888752 1367888888
Q ss_pred cCCceEEEEee
Q 013982 280 TSTEAVFMTGR 290 (432)
Q Consensus 280 ~~~~~vl~~~~ 290 (432)
+....+++...
T Consensus 263 P~t~~~~~~~~ 273 (541)
T TIGR01676 263 PYTDAIVVVTC 273 (541)
T ss_pred cCCCceeEEEc
Confidence 76655544433
No 6
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=2.1e-31 Score=275.70 Aligned_cols=219 Identities=19% Similarity=0.233 Sum_probs=176.9
Q ss_pred cccccccccccCC---CCCCHHHHHHHHHHHHHhCCCCC-ceeeecCCCceeecccCCcccC-CCeEEEEcCCCCC----
Q 013982 46 GDVKSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKD-GLVCTARKPWIAVGMRNVDYKR-ARHFEVDLSAFRN---- 116 (432)
Q Consensus 46 ~~~w~~~~~~~~~---~p~~~~~v~~iv~~~~~~~~~~~-~~~~~g~~~~~~~G~~~~~~~~-~~gvvIdl~~l~~---- 116 (432)
+| |+......|. .|.+++||+++++++++.. .+. ...+|++|++. +.+. ++|++|||++||+
T Consensus 55 ~d-~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~-~~~~V~~rGgGHS~~-------G~a~~~~GivIdms~Ln~i~~~ 125 (525)
T PLN02441 55 KD-FGNLVHSLPAAVLYPSSVEDIASLVRAAYGSS-SPLTVAARGHGHSLN-------GQAQAPGGVVVDMRSLRGGVRG 125 (525)
T ss_pred cC-cccccCCCCCEEEeCCCHHHHHHHHHHHhhcc-CCceEEEECCCcCCC-------CCccCCCeEEEECCCCCCcCcc
Confidence 45 7777655565 7888899999998887432 222 23445555432 2222 4799999999999
Q ss_pred --ceEEeCCCcEEEEcCCccHHHHHHHHccCCceeeeecCCCcccccccccCccCCCCCcccCccccceeEEEEEecCCc
Q 013982 117 --ILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQ 194 (432)
Q Consensus 117 --i~~id~~~~~v~v~~G~~~~~l~~~l~~~Gl~~~~~p~~~~~tvGG~i~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~ 194 (432)
++++|.+..+|+|++|++|.++.+++.++|++++..++...+||||+++++|+|+.+.+||...|+|+++|||++||+
T Consensus 126 ~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~GlaP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGe 205 (525)
T PLN02441 126 PPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGE 205 (525)
T ss_pred CceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCce
Confidence 568899999999999999999999999999998777788899999999988999999999999999999999999999
Q ss_pred EEEEcCCCCCcchhhhcccccCCceEEEEEEEEeEEcCceEEEEEeccCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCce
Q 013982 195 VVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFV 274 (432)
Q Consensus 195 i~~~~~~~~~~dL~~a~~gs~G~lGiVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 274 (432)
+++|+++ +|+|||||++||+|+|||||++|+|++|.++....... .+.+++++.+...++... ......+++
T Consensus 206 vv~~s~~-~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~-~y~~~~~~~~d~~~li~~------~~~~~~d~v 277 (525)
T PLN02441 206 VVTCSPT-QNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRV-LYSDFSTFTRDQERLISR------PPENSFDYV 277 (525)
T ss_pred EEEeCCC-CChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEE-EcCCHHHHHHHHHHHHhc------CCCCCcceE
Confidence 9999986 89999999999999999999999999999985443222 357899888888877531 011124788
Q ss_pred EEEEecC
Q 013982 275 EGMIYTS 281 (432)
Q Consensus 275 ~~~~~~~ 281 (432)
|+.++..
T Consensus 278 eg~~~p~ 284 (525)
T PLN02441 278 EGFVIVN 284 (525)
T ss_pred eEEEEeC
Confidence 9887765
No 7
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=99.97 E-value=1.3e-30 Score=267.31 Aligned_cols=222 Identities=21% Similarity=0.305 Sum_probs=180.2
Q ss_pred hccccccccccccCC---CCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCCCeEEEEcCCCCCceEE
Q 013982 44 YLGDVKSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDI 120 (432)
Q Consensus 44 ~~~~~w~~~~~~~~~---~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~~gvvIdl~~l~~i~~i 120 (432)
.++| |+....+.|. .|.+.++|+++++.+++++. ....+|++|++ ++...++|++|||++||+|+++
T Consensus 3 ~w~n-W~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~--~v~v~G~GhS~-------s~~~~~~gvvIdl~~l~~i~~i 72 (438)
T TIGR01678 3 QFQN-WAKTYSASPEVYYQPTSVEEVREVLALAREQKK--KVKVVGGGHSP-------SDIACTDGFLIHLDKMNKVLQF 72 (438)
T ss_pred eEEe-CCCcccCCCCEEEecCCHHHHHHHHHHHHHCCC--eEEEECCCCCC-------CCCccCCeEEEEhhhcCCceEE
Confidence 4567 8886655555 78899999999999988774 22333444433 2233457899999999999999
Q ss_pred eCCCcEEEEcCCccHHHHHHHHccCCceeeeecCCCcccccccccCccCCCCCcccCccccceeEEEEEecCCcEEEEcC
Q 013982 121 DKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATK 200 (432)
Q Consensus 121 d~~~~~v~v~~G~~~~~l~~~l~~~Gl~~~~~p~~~~~tvGG~i~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~ 200 (432)
|+++++|+|+||+++.+|.+.|.++|+++++.|+++.+||||++++|++| .+.+||.++|+|+++++|++||+++++++
T Consensus 73 d~~~~~vtV~aG~~l~~L~~~L~~~Gl~l~~~g~~~~~TvGG~iatg~hG-~~~~~G~~~d~V~~l~vV~~~G~i~~~s~ 151 (438)
T TIGR01678 73 DKEKKQITVEAGIRLYQLHEQLDEHGYSMSNLGSISEVSVAGIISTGTHG-SSIKHGILATQVVALTIMTADGEVLECSE 151 (438)
T ss_pred cCCCCEEEEcCCCCHHHHHHHHHHcCCEecCCCCCCCceeeehhcCCCCC-CccccCcHHhhEEEEEEEcCCCcEEEeCC
Confidence 99999999999999999999999999999888899999999999776666 57899999999999999999999999998
Q ss_pred CCCCcchhhhcccccCCceEEEEEEEEeEEcCceEEEEEeccCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCceEEEEec
Q 013982 201 DNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYT 280 (432)
Q Consensus 201 ~~~~~dL~~a~~gs~G~lGiVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 280 (432)
+ +++||||+.+||+|+|||||++|||++|....... .. ..+++++++.+.+... ..++++.++++
T Consensus 152 ~-~~~dlf~a~~~~~G~lGIIt~vtl~l~p~~~l~~~-~~--~~~~~~~~~~~~~~~~-----------~~~~~~~~w~p 216 (438)
T TIGR01678 152 E-RNADVFQAARVSLGCLGIIVTVTIQVVPQFHLQET-SF--VSTLKELLDNWDSHWK-----------SSEFFRVLWFP 216 (438)
T ss_pred C-CChhHHHHHhcCCCceEeeEEEEEEEEeccceEEE-Ee--cCCHHHHHHHHHHHhh-----------cCCeEEEEEEc
Confidence 6 89999999999999999999999999998875443 22 3578999999887642 13678888776
Q ss_pred CC-ceEEEEeee
Q 013982 281 ST-EAVFMTGRY 291 (432)
Q Consensus 281 ~~-~~vl~~~~~ 291 (432)
.. .+++..+..
T Consensus 217 ~~~~~~~~~~~~ 228 (438)
T TIGR01678 217 YTENVVIWRQNK 228 (438)
T ss_pred CCCcEEEEECcc
Confidence 44 455455543
No 8
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=99.97 E-value=3.2e-30 Score=264.04 Aligned_cols=219 Identities=14% Similarity=0.236 Sum_probs=172.9
Q ss_pred cccccccccccCC---CCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCCCeEEEEcCCCCCceEEeC
Q 013982 46 GDVKSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDK 122 (432)
Q Consensus 46 ~~~w~~~~~~~~~---~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~~gvvIdl~~l~~i~~id~ 122 (432)
+| |+...+..|. .|.++++|+++++.++ . ....+|++|++. +...++|++|||++||+|+++|+
T Consensus 2 ~n-W~~~~~~~p~~v~~P~s~~ev~~~v~~a~---~--~v~~~G~Ghs~~-------~~~~~~g~~idl~~l~~i~~~d~ 68 (419)
T TIGR01679 2 SN-WSGEQVAAPSAIVRPTDEGELADVIAQAA---K--PVRAVGSGHSFT-------DLACTDGTMISLTGLQGVVDVDQ 68 (419)
T ss_pred cC-CCCCccCCCCeEECCCCHHHHHHHHHHhC---C--CEEEEeCCCCCC-------CcccCCCEEEEhhHcCCceeecC
Confidence 56 8777655565 6777777777776664 1 233445555432 23345789999999999999999
Q ss_pred CCcEEEEcCCccHHHHHHHHccCCceeeeecCCCcccccccccCccCCCCCcccCccccceeEEEEEecCCcEEEEcCCC
Q 013982 123 DRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDN 202 (432)
Q Consensus 123 ~~~~v~v~~G~~~~~l~~~l~~~Gl~~~~~p~~~~~tvGG~i~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~~~ 202 (432)
++++|+||||+++.+|.+.|.++|+.+|+.|++..+||||+++++++| .+.+||.++|+|++++||++||++++++++
T Consensus 69 ~~~~v~v~aG~~l~~l~~~L~~~G~~l~~~~~~~~~tvGG~ia~~~hG-~g~~~G~~~d~V~~l~vV~a~G~v~~~~~~- 146 (419)
T TIGR01679 69 PTGLATVEAGTRLGALGPQLAQRGLGLENQGDIDPQSIGGALGTATHG-TGVRFQALHARIVSLRLVTAGGKVLDLSEG- 146 (419)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHcCCccccCCCCCCceeccceecCCCC-CCccCCchhhhEEEEEEEcCCCCEEEEcCC-
Confidence 999999999999999999999999999988888889999999765544 578999999999999999999999999987
Q ss_pred CCcchhhhcccccCCceEEEEEEEEeEEcCceEEEEEeccCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCceEEEEecC-
Q 013982 203 EYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTS- 281 (432)
Q Consensus 203 ~~~dL~~a~~gs~G~lGiVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~- 281 (432)
+++|||||++||+|+|||||++|||++|.+....... ..+++++++.+.+++.. .++++.++++.
T Consensus 147 ~~~dLf~a~~g~~G~lGVIt~vtl~~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~-----------~~~~~~~~~p~~ 212 (419)
T TIGR01679 147 DDQDMYLAARVSLGALGVISQVTLQTVALFRLRRRDW---RRPLAQTLERLDEFVDG-----------HRHFEFYVFPFA 212 (419)
T ss_pred CCHHHHHHHHhCCCceEEEEEEEEEeecceEeEEEEE---ecCHHHHHHHHHHHHhc-----------CCeEEEEEecCC
Confidence 8999999999999999999999999999987544322 23678888888887531 36677777654
Q ss_pred CceEEEEeeecC
Q 013982 282 TEAVFMTGRYAS 293 (432)
Q Consensus 282 ~~~vl~~~~~~~ 293 (432)
..++++.+...+
T Consensus 213 ~~~~~~~~~~~~ 224 (419)
T TIGR01679 213 GKALTITMDRSD 224 (419)
T ss_pred CeEEEEECCcCC
Confidence 355555555543
No 9
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.97 E-value=1.2e-29 Score=265.53 Aligned_cols=228 Identities=16% Similarity=0.174 Sum_probs=175.8
Q ss_pred hhhhhccccccccccccCC---CCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCCCeEEEEcCCCCC
Q 013982 40 YFLIYLGDVKSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRN 116 (432)
Q Consensus 40 ~~~~~~~~~w~~~~~~~~~---~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~~gvvIdl~~l~~ 116 (432)
..+..++| |+..+++.|. .|.+++||+++++++++++. +..++.+++|++..+....+ .++|++|||++||+
T Consensus 16 ~~~~~w~n-Wag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~-~v~v~GG~gHs~~~~a~t~~---~~ggvvIdL~~Ln~ 90 (557)
T TIGR01677 16 TVSNAYGA-FPDRSTCRAANVAYPKTEAELVSVVAAATAAGR-KMKVVTRYSHSIPKLACPDG---SDGALLISTKRLNH 90 (557)
T ss_pred eeecchhh-cCCcccCCCCEEEecCCHHHHHHHHHHHHHCCC-eEEEEeCCCCCcCcccccCC---CCCEEEEEcccCCC
Confidence 34456688 9998877776 79999999999999998774 22222233444322111110 12469999999999
Q ss_pred ceEEeCCCcEEEEcCCccHHHHHHHHccCCceeeeecCCCcccccccccCccCCCCC-cccCccccceeEEEEEecCC--
Q 013982 117 ILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSS-HIYGLFSDTVVAYEIVLADG-- 193 (432)
Q Consensus 117 i~~id~~~~~v~v~~G~~~~~l~~~l~~~Gl~~~~~p~~~~~tvGG~i~~gg~g~~~-~~~G~~~d~v~~~~vV~~~G-- 193 (432)
|+++|.++++|+|+||+++.+|.+.|.++|+.++..|++..+||||++++|++|... +++|.++|+|++++||++||
T Consensus 91 il~iD~~~~tVtV~AG~~l~~L~~~L~~~Glal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a 170 (557)
T TIGR01677 91 VVAVDATAMTVTVESGMSLRELIVEAEKAGLALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAA 170 (557)
T ss_pred CEEEeCCCCEEEECCCCcHHHHHHHHHHcCCEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcc
Confidence 889999999999999999999999999999999988888889999999777666444 58899999999999999999
Q ss_pred ----cEEEEcCCCCCcchhhhcccccCCceEEEEEEEEeEEcCceEEEEEeccCCCHHHHHHHHHHHhCCCCCCCCCCCC
Q 013982 194 ----QVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAK 269 (432)
Q Consensus 194 ----~i~~~~~~~~~~dL~~a~~gs~G~lGiVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
++++++.+ +++||||+++||+|+|||||++|||++|.+. ....+. ....+++.+.+.++..
T Consensus 171 ~G~~~v~~~s~~-~~~dLf~a~rgslG~lGVVtevTL~~~P~~~-~~~~~~--~~~~~~l~~~~~~~~~----------- 235 (557)
T TIGR01677 171 EGFAKVRILSEG-DTPNEFNAAKVSLGVLGVISQVTLALQPMFK-RSVTYT--MRDDSDFEDQFVTFGK----------- 235 (557)
T ss_pred cCcceEEEeCCC-CCHHHHHhhccCCCccEeeeEEEEEEEcccc-ceEEEE--cCCHHHHHHHHHHhhc-----------
Confidence 89999876 8999999999999999999999999999876 333333 3467777776776632
Q ss_pred CCCceEEEEecCCceEEE
Q 013982 270 VPDFVEGMIYTSTEAVFM 287 (432)
Q Consensus 270 ~p~~~~~~~~~~~~~vl~ 287 (432)
..++.++++++.....++
T Consensus 236 ~~~~~~f~w~P~~~~~~~ 253 (557)
T TIGR01677 236 KHEFADITWYPSQGKAVY 253 (557)
T ss_pred CCeEEEEEEECCCCeEEE
Confidence 125666666655544333
No 10
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.97 E-value=1.4e-29 Score=262.93 Aligned_cols=185 Identities=26% Similarity=0.312 Sum_probs=155.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCCC-eEEEEcCCCCCceEEeCCCcEEEEcCCccH
Q 013982 57 KRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRAR-HFEVDLSAFRNILDIDKDRMIAKVEPLVNM 135 (432)
Q Consensus 57 ~~~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~~-gvvIdl~~l~~i~~id~~~~~v~v~~G~~~ 135 (432)
...|.++++|++++++|.+++. ..+.++|++++. +.+... +++|||++||+|+++|+++.+++|+||+++
T Consensus 35 v~~p~s~~eV~~iv~~a~~~~~--~v~prG~gts~~-------g~~~~~~gvvl~l~~mn~i~~id~~~~~~~v~aGv~l 105 (459)
T COG0277 35 VVFPKSEEEVAAILRLANENGI--PVVPRGGGTSLS-------GGAVPDGGVVLDLSRLNRILEIDPEDGTATVQAGVTL 105 (459)
T ss_pred EEccCCHHHHHHHHHHHHHcCC--eEEEECCCCCcc-------ccccCCCcEEEEchhhcchhccCcCCCEEEEcCCccH
Confidence 3489999999999999999885 234444444321 112223 999999999999889999999999999999
Q ss_pred HHHHHHHccCCceeeeecCCC-cccccccccCccCCCCCcccCccccceeEEEEEecCCcEEEEcC----CCCCcchhhh
Q 013982 136 GQISRATCPMNLSLAVVAELD-DLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATK----DNEYKDLFYA 210 (432)
Q Consensus 136 ~~l~~~l~~~Gl~~~~~p~~~-~~tvGG~i~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~----~~~~~dL~~a 210 (432)
.+|.++|.++|+++|++|++. .+||||++++++.|..+.+||.+.|+|+++++|++||++++++. +..++||+++
T Consensus 106 ~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l 185 (459)
T COG0277 106 EDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTAL 185 (459)
T ss_pred HHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHh
Confidence 999999999999999999876 99999999999999999999999999999999999999999876 3467999999
Q ss_pred cccccCCceEEEEEEEEeEEcCceEEEEEeccCCCHHHHHH
Q 013982 211 IPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQ 251 (432)
Q Consensus 211 ~~gs~G~lGiVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~ 251 (432)
+.||+|+|||||++|+|+.|.++.....+. .+.+.+.+..
T Consensus 186 ~iGs~GtlGiit~~tl~l~p~~~~~~~~~~-~~~~~~~~~~ 225 (459)
T COG0277 186 FVGSEGTLGIITEATLKLLPLPETKATAVA-GFPSIEAAAR 225 (459)
T ss_pred cccCCccceEEEEEEEEeccCCchheEEEE-eCCCHHHHHH
Confidence 999999999999999999999885554443 2455554443
No 11
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.96 E-value=2.2e-28 Score=254.91 Aligned_cols=220 Identities=21% Similarity=0.303 Sum_probs=176.9
Q ss_pred hhccccccccccccCC---CCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccC--CcccCCCeEEEEcCCCCCc
Q 013982 43 IYLGDVKSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRN--VDYKRARHFEVDLSAFRNI 117 (432)
Q Consensus 43 ~~~~~~w~~~~~~~~~---~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~--~~~~~~~gvvIdl~~l~~i 117 (432)
..++| |+....+.|. .|.+.++|+++++.+++++. ++.+.|+|+ ++...+++.+|||++||+|
T Consensus 84 ~~~~N-Wsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~-----------~VrvvGsGhS~~~l~~td~glIdL~~l~~I 151 (573)
T PLN02465 84 HTVSN-WSGTHEVQTRRYHQPESLEELEDIVKEAHEKGR-----------RIRPVGSGLSPNGLAFSREGMVNLALMDKV 151 (573)
T ss_pred hhccc-cccccCCCCCEEEEeCCHHHHHHHHHHHHHcCC-----------cEEEEcCCcCCCCeeeCCCEEEECcCCCCc
Confidence 35678 9888766665 78899999999999888774 333334333 2333344557899999999
Q ss_pred eEEeCCCcEEEEcCCccHHHHHHHHccCCceeeeecCCCcccccccccCccCCCCCcccCccccceeEEEEEecCCcEEE
Q 013982 118 LDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVR 197 (432)
Q Consensus 118 ~~id~~~~~v~v~~G~~~~~l~~~l~~~Gl~~~~~p~~~~~tvGG~i~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~ 197 (432)
+++|+++++|+|++|+++.+|.+.|.++|+.++..|++..+||||++++ |.|+.+..+|.++|+|+++++|+++|++++
T Consensus 152 l~vD~e~~~VtV~AG~~l~~L~~~L~~~GLal~n~g~I~~~TIGGaIst-GtHGtG~~~g~i~d~V~~l~lVta~G~vv~ 230 (573)
T PLN02465 152 LEVDKEKKRVTVQAGARVQQVVEALRPHGLTLQNYASIREQQIGGFIQV-GAHGTGARIPPIDEQVVSMKLVTPAKGTIE 230 (573)
T ss_pred EEEeCCCCEEEEccCCCHHHHHHHHHHcCCEeccCCCCCCeeecchhhC-CCCCcCCCcCcHhheEEEEEEEECCCCEEE
Confidence 9999999999999999999999999999999998888889999999975 455566789999999999999999999999
Q ss_pred EcCCCCCcchhhhcccccCCceEEEEEEEEeEEcCceEEEEEeccCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCceEEE
Q 013982 198 ATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGM 277 (432)
Q Consensus 198 ~~~~~~~~dL~~a~~gs~G~lGiVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 277 (432)
++++ +++|||++.+++.|+|||||++|||++|.+......+. .+++++.+.+.++.+. .++++.+
T Consensus 231 ~s~~-~~pdLF~aar~glG~lGVIteVTLql~P~~~L~~~~~~---~~~~~~~~~~~~~~~~-----------~~h~~f~ 295 (573)
T PLN02465 231 LSKE-DDPELFRLARCGLGGLGVVAEVTLQCVPAHRLVEHTFV---SNRKEIKKNHKKWLSE-----------NKHIRYM 295 (573)
T ss_pred ECCC-CCHHHHhHhhccCCCCcEEEEEEEEEEecCceEEEEEE---ecHHHHHHHHHHHHHh-----------Cccccee
Confidence 9986 78999999999999999999999999999986654543 2578888888887531 3566777
Q ss_pred EecCCceEEEEee
Q 013982 278 IYTSTEAVFMTGR 290 (432)
Q Consensus 278 ~~~~~~~vl~~~~ 290 (432)
+++....+++...
T Consensus 296 wfP~td~~~v~~~ 308 (573)
T PLN02465 296 WIPYTDTVVVVTC 308 (573)
T ss_pred ecCCcceEEEEeC
Confidence 7765554444433
No 12
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.96 E-value=3e-28 Score=242.08 Aligned_cols=182 Identities=15% Similarity=0.138 Sum_probs=149.4
Q ss_pred CHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCC---cccCCCeEEEEcCCCCCceEEeCCCcEEEEcCCccHHHH
Q 013982 62 HDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNV---DYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQI 138 (432)
Q Consensus 62 ~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~---~~~~~~gvvIdl~~l~~i~~id~~~~~v~v~~G~~~~~l 138 (432)
..++|+++++++++++. ++.+.|+|+. +. ..++++|||++||+|+++|+++.+|+|+||+++.+|
T Consensus 3 ~~~ev~~~v~~A~~~~~-----------~v~~~GgGt~~~~g~-~~~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el 70 (352)
T PRK11282 3 ISAALLERVRQAAADGT-----------PLRIRGGGSKDFYGR-ALAGEVLDTRAHRGIVSYDPTELVITARAGTPLAEL 70 (352)
T ss_pred hHHHHHHHHHHHHHCCC-----------eEEEECCCCCCCCCC-CCCCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHH
Confidence 35889999999988774 3333333321 11 225679999999999999999999999999999999
Q ss_pred HHHHccCCceeeeecC-C-CcccccccccCccCCCCCcccCccccceeEEEEEecCCcEEEEcC----CCCCcchhhhcc
Q 013982 139 SRATCPMNLSLAVVAE-L-DDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATK----DNEYKDLFYAIP 212 (432)
Q Consensus 139 ~~~l~~~Gl~~~~~p~-~-~~~tvGG~i~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~----~~~~~dL~~a~~ 212 (432)
.++|.++|+++|..|. . ..+||||++++|++|..+.+||.++|+|+++++|++||++++++. +..++||+|+++
T Consensus 71 ~~~L~~~G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~ 150 (352)
T PRK11282 71 EAALAEAGQMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMA 150 (352)
T ss_pred HHHHHHcCCeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHh
Confidence 9999999999987663 3 358999999999999889999999999999999999999999863 336899999999
Q ss_pred cccCCceEEEEEEEEeEEcCceEEEEEeccCCCHHHHHHHHHHHh
Q 013982 213 WSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSF 257 (432)
Q Consensus 213 gs~G~lGiVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (432)
||+|+|||||++|||++|.|+....... .+ +.+++++++.++.
T Consensus 151 Gs~GtLGVitevtlkl~P~p~~~~t~~~-~~-~~~~a~~~~~~~~ 193 (352)
T PRK11282 151 GSLGTLGVLLEVSLKVLPRPRAELTLRL-EM-DAAEALRKLNEWG 193 (352)
T ss_pred hCCchhhhheEEEEEEEecCceEEEEEE-ec-CHHHHHHHHHHHh
Confidence 9999999999999999999985443222 23 3577788888775
No 13
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.90 E-value=9.2e-24 Score=207.52 Aligned_cols=163 Identities=23% Similarity=0.278 Sum_probs=134.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCC--ccc--CCCeEEEEcC---CCCCceEEeCCCcEEEEcC
Q 013982 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNV--DYK--RARHFEVDLS---AFRNILDIDKDRMIAKVEP 131 (432)
Q Consensus 59 ~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~--~~~--~~~gvvIdl~---~l~~i~~id~~~~~v~v~~ 131 (432)
-|.+.+||+++++.|...+ ... |..++|+|++ +++ ..+|++|.|+ .|+++-.+..++..|.|.|
T Consensus 69 ~P~S~edVs~ilk~~~~~~-s~~--------pVaarG~GhSl~Gqa~a~~~GvvV~m~~~~~~~~~~~~~~~~~yvdV~~ 139 (505)
T KOG1231|consen 69 FPSSVEDVSKILKHCNDYG-SNF--------PVAARGGGHSLEGQALATRGGVVVCMDSSLLMKDVPVLVVDDLYVDVSA 139 (505)
T ss_pred cCCCHHHHHHHHHHHhccC-Ccc--------eeeccCCcccccCccccCCCCeEEEEehhhccCCCceeecccceEEeeC
Confidence 5778888888888887764 223 3344444443 222 2588776654 3666655667778999999
Q ss_pred CccHHHHHHHHccCCc--eeeeecCCCcccccccccCccCCCCCcccCccccceeEEEEEecCCcEEEEcCCCCCcchhh
Q 013982 132 LVNMGQISRATCPMNL--SLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFY 209 (432)
Q Consensus 132 G~~~~~l~~~l~~~Gl--~~~~~p~~~~~tvGG~i~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~~~~~~dL~~ 209 (432)
|..|-+|++++.++|+ +.+.++.. .||||.++++|+|+...+||...+||++++||+++|++++|++. .|++||+
T Consensus 140 g~~Widll~~t~e~GL~p~swtDyl~--ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r-~n~~lf~ 216 (505)
T KOG1231|consen 140 GTLWIDLLDYTLEYGLSPFSWTDYLP--LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKR-ANSNLFF 216 (505)
T ss_pred ChhHHHHHHHHHHcCCCccCcCCccc--eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccc-cCceeee
Confidence 9999999999999999 55555543 89999999999999999999999999999999999999999997 9999999
Q ss_pred hcccccCCceEEEEEEEEeEEcCc
Q 013982 210 AIPWSQGTLGLLVSAEIKLIPIKE 233 (432)
Q Consensus 210 a~~gs~G~lGiVt~~~lkl~p~~~ 233 (432)
++.||+|+|||||+++++|+|+|.
T Consensus 217 ~vlGglGqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 217 LVLGGLGQFGIITRARIKLEPAPK 240 (505)
T ss_pred eeeccCcceeeEEEEEEEeccCCc
Confidence 999999999999999999999994
No 14
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.89 E-value=2.2e-22 Score=197.93 Aligned_cols=208 Identities=19% Similarity=0.280 Sum_probs=163.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCCCeEEEEcCCCCCceEEeCCCcEEEEcCCccH
Q 013982 56 KKRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNM 135 (432)
Q Consensus 56 ~~~~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~~gvvIdl~~l~~i~~id~~~~~v~v~~G~~~ 135 (432)
+..+|.+++|+.++|+.+++++. +..+++ .|++.+.+.+++|.+|+++.||+++++|++..++||++|+++
T Consensus 52 nv~yP~teaeL~~lVa~A~~a~~--kirvVg-------~gHSp~~l~ctdg~lisl~~lnkVv~~dpe~~tvTV~aGirl 122 (518)
T KOG4730|consen 52 NVNYPKTEAELVELVAAATEAGK--KIRVVG-------SGHSPSKLVCTDGLLISLDKLNKVVEFDPELKTVTVQAGIRL 122 (518)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCc--eEEEec-------ccCCCCcceeccccEEEhhhhccceeeCchhceEEeccCcCH
Confidence 34479999999999999999884 222222 234456677788899999999999999999999999999999
Q ss_pred HHHHHHHccCCceeeeecCCCcccccccccCccCCCCCcc-cCccccceeEEEEEecCCcEEEEcCCCCCcchhhhcccc
Q 013982 136 GQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHI-YGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWS 214 (432)
Q Consensus 136 ~~l~~~l~~~Gl~~~~~p~~~~~tvGG~i~~gg~g~~~~~-~G~~~d~v~~~~vV~~~G~i~~~~~~~~~~dL~~a~~gs 214 (432)
.+|++++.+.|+.+|..|+...++|||++.. |.|++|.. |+..........++.++|.++.++++ .+|++|.|.+.|
T Consensus 123 rQLie~~~~~GlsL~~~~si~e~sVgGii~T-GaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e-~dpe~F~AAkvS 200 (518)
T KOG4730|consen 123 RQLIEELAKLGLSLPNAPSISEQSVGGIIST-GAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEE-KDPELFNAAKVS 200 (518)
T ss_pred HHHHHHHHhcCccccCCCceecceeeeEEec-ccCCCccccCcccceeEEEeeeccCCceEEEeccc-CCHHHHhhhhhc
Confidence 9999999999999999999999999999965 55555555 66666666667777889999999986 899999999999
Q ss_pred cCCceEEEEEEEEeEEcCceEEEEEeccCCCHHHHHHHHH-HHhCCCCCCCCCCCCCCCceEEEEecCC-ceEEEE
Q 013982 215 QGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYA-DSFAPRDGDQDNQAKVPDFVEGMIYTST-EAVFMT 288 (432)
Q Consensus 215 ~G~lGiVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~vl~~ 288 (432)
.|.+|||.++||+++|..+....... .+..++++-+. .+. ...+|++..+++.. .+|+..
T Consensus 201 LG~LGVIs~VTl~~vp~Fk~s~t~~v---~n~~dl~~d~~~~~~-----------~~~EF~~~~w~Py~~kvV~~~ 262 (518)
T KOG4730|consen 201 LGVLGVISQVTLSVVPAFKRSLTYVV---TNDSDLFKDWKVTLG-----------ESHEFVDVLWYPYTGKVVYRR 262 (518)
T ss_pred ccceeEEEEEEEEEEecceeeeEEEE---echHHHHHHHHHHhc-----------ccccceEEEEeccCCeEEEEe
Confidence 99999999999999999875443332 34555555444 331 11488998887654 444433
No 15
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.88 E-value=1.1e-22 Score=195.39 Aligned_cols=199 Identities=18% Similarity=0.216 Sum_probs=161.0
Q ss_pred ccccccccC---CCCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCCCeEEEEcCCCCCceEEeCCCc
Q 013982 49 KSDMKSYKK---RQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRM 125 (432)
Q Consensus 49 w~~~~~~~~---~~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~~gvvIdl~~l~~i~~id~~~~ 125 (432)
|...+.-+. -.|.+.++|.+|+++|.+.+ .+++-.|+..-. .|++ ....+.|+++|.+||+|+++|+-.+
T Consensus 82 wm~kyrG~sklvL~Pkst~eVS~ILkYCn~~k---LAVVPQGGNTgL-VGgS---VPvfDEiVlsl~~mNKi~sfDevsG 154 (511)
T KOG1232|consen 82 WMKKYRGQSKLVLKPKSTEEVSAILKYCNDRK---LAVVPQGGNTGL-VGGS---VPVFDEIVLSLGLMNKILSFDEVSG 154 (511)
T ss_pred HHHhccCCceEEecCCCHHHHHHHHHhhcccc---EEEecCCCCccc-ccCc---ccchHHHhhhhhhhccccccccccc
Confidence 655443332 38999999999999998755 455544443221 1211 1234789999999999999999999
Q ss_pred EEEEcCCccHHHHHHHHccCCceeeee-cCCCcccccccccCccCCCCCcccCccccceeEEEEEecCCcEEEE----cC
Q 013982 126 IAKVEPLVNMGQISRATCPMNLSLAVV-AELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRA----TK 200 (432)
Q Consensus 126 ~v~v~~G~~~~~l~~~l~~~Gl~~~~~-p~~~~~tvGG~i~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~----~~ 200 (432)
++++++|+.+.++.++|.++|+++|-+ |+-.+|.|||.++.++.|-.-.+||+..-+|+++|+|+|+|+++.. .+
T Consensus 155 il~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRK 234 (511)
T KOG1232|consen 155 ILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRK 234 (511)
T ss_pred eEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcc
Confidence 999999999999999999999999864 5778999999997666555578999999999999999999999873 45
Q ss_pred CCCCcchhhhcccccCCceEEEEEEEEeEEcCceEEEEEeccCCCHHHHHHHHHH
Q 013982 201 DNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYAD 255 (432)
Q Consensus 201 ~~~~~dL~~a~~gs~G~lGiVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (432)
++.+.|+-+.++||+|++||||++++-+.|.|..+...|+. -.+++++++.+.+
T Consensus 235 DNTgydlkhLFIGSEGtlGVvT~vSil~~~kpksvn~af~g-i~sf~~v~k~fv~ 288 (511)
T KOG1232|consen 235 DNTGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVNVAFIG-IESFDDVQKVFVE 288 (511)
T ss_pred cCccccchhheecCCceeeEEeeEEEeecCCCcceeEEEEc-cccHHHHHHHHHH
Confidence 66899999999999999999999999999999988777774 4678877776653
No 16
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.86 E-value=2.5e-21 Score=198.08 Aligned_cols=193 Identities=10% Similarity=0.033 Sum_probs=151.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcc--cCCCeEEEEcCCCCCceEEeCCCcEEEEcCCcc
Q 013982 57 KRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDY--KRARHFEVDLSAFRNILDIDKDRMIAKVEPLVN 134 (432)
Q Consensus 57 ~~~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~--~~~~gvvIdl~~l~~i~~id~~~~~v~v~~G~~ 134 (432)
...|.+.++|++|+++|.+++. ..++++|+.+.. |++.... ...++|+|||++||+|++|| ++.+++|+||++
T Consensus 42 VV~P~SteEVa~IVklC~e~~v--PVIPRGgGTGLt--GGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVt 116 (564)
T PRK11183 42 VVFPGTLLELWRVLQACVAADK--IIIMQAANTGLT--GGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTT 116 (564)
T ss_pred EEecCCHHHHHHHHHHHHHcCC--eEEEeCCCcccc--cCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCc
Confidence 3489999999999999999886 334444433221 1111100 00148999999999999999 457899999999
Q ss_pred HHHHHHHHccCCceeeeec-C-CCcccccccccCccCCCCCcccCccccceeEEEEEecCCcE-------EEEcCC----
Q 013982 135 MGQISRATCPMNLSLAVVA-E-LDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQV-------VRATKD---- 201 (432)
Q Consensus 135 ~~~l~~~l~~~Gl~~~~~p-~-~~~~tvGG~i~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i-------~~~~~~---- 201 (432)
+.+|.++|.++|+.++..+ + +..+||||.|++|+.|....+||.+.++++. ++|+++|++ ++..++
T Consensus 117 l~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~i 195 (564)
T PRK11183 117 LYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPEEI 195 (564)
T ss_pred HHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHHHH
Confidence 9999999999999887754 3 4467999999887878889999999999999 999999999 432221
Q ss_pred -----CCCc----------------------------------chhhhc--ccccCCceEEEEEEEEeEEcCceEEEEEe
Q 013982 202 -----NEYK----------------------------------DLFYAI--PWSQGTLGLLVSAEIKLIPIKEYMKLTYK 240 (432)
Q Consensus 202 -----~~~~----------------------------------dL~~a~--~gs~G~lGiVt~~~lkl~p~~~~~~~~~~ 240 (432)
..+. |+...+ .||+|+|||+ +++++++|.|+.....++
T Consensus 196 l~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~i 274 (564)
T PRK11183 196 LTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYI 274 (564)
T ss_pred HHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCCceEEEE-EEEeccccCCCcceEEEE
Confidence 1233 888888 9999999999 999999999986666666
Q ss_pred ccCCCHHHHHHHHHHHh
Q 013982 241 PVASNLREIAQAYADSF 257 (432)
Q Consensus 241 ~~~~~~~~~~~~~~~~~ 257 (432)
.+++.+++.+..++++
T Consensus 275 -g~n~~~~~~~~rr~il 290 (564)
T PRK11183 275 -GTNDPAVLTEIRRHIL 290 (564)
T ss_pred -eCCCHHHHHHHHHHHH
Confidence 4789999988888876
No 17
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.86 E-value=1.4e-21 Score=170.48 Aligned_cols=132 Identities=31% Similarity=0.411 Sum_probs=111.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCccc-CCCeEEEEcCCCCCceEEeCCCcEEEEcCCccHHH
Q 013982 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYK-RARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQ 137 (432)
Q Consensus 59 ~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~-~~~gvvIdl~~l~~i~~id~~~~~v~v~~G~~~~~ 137 (432)
.|.+++|++++++++++++. ....++++|++. +.. .+++++|||++||+|+++|+++++++|+||+++.+
T Consensus 6 ~P~s~~ev~~~v~~a~~~~~--~v~~~g~G~~~~-------~~~~~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~ 76 (139)
T PF01565_consen 6 RPKSVEEVQAIVKFANENGV--PVRVRGGGHSWT-------GQSSDEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGD 76 (139)
T ss_dssp EESSHHHHHHHHHHHHHTTS--EEEEESSSTTSS-------STTSSTTEEEEECTTCGCEEEEETTTTEEEEETTSBHHH
T ss_pred EeCCHHHHHHHHHHHHHcCC--cEEEEcCCCCcc-------cccccCCcEEEeeccccccccccccceeEEEeccccchh
Confidence 68999999999999999885 223333333322 122 26899999999999879999999999999999999
Q ss_pred HHHHHccCCceeeeec-CCCcccccccccCccCCCCCcccCccccceeEEEEEecCCcEEEEc
Q 013982 138 ISRATCPMNLSLAVVA-ELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRAT 199 (432)
Q Consensus 138 l~~~l~~~Gl~~~~~p-~~~~~tvGG~i~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~ 199 (432)
|+++|.++|+.++..+ .+..+|+||++++|++|..+..||.++|+|+++++|++||++++++
T Consensus 77 l~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~s 139 (139)
T PF01565_consen 77 LYEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRCS 139 (139)
T ss_dssp HHHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEEE
T ss_pred cccccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEeC
Confidence 9999999999998655 5678899999999999989999999999999999999999999875
No 18
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.82 E-value=5.4e-20 Score=180.43 Aligned_cols=148 Identities=22% Similarity=0.258 Sum_probs=122.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCC---CeEEEEcCC-CCCceEEeCCCcEEEEcCCc
Q 013982 58 RQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRA---RHFEVDLSA-FRNILDIDKDRMIAKVEPLV 133 (432)
Q Consensus 58 ~~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~---~gvvIdl~~-l~~i~~id~~~~~v~v~~G~ 133 (432)
..|.+++|++++++++++.+. |+.++|+|+|....+ +|++||+++ |+.| +++ +.+++|+||+
T Consensus 35 v~P~s~edv~~~v~~a~~~~~-----------p~~v~GgGsnll~~d~g~~gvvI~l~~~l~~i-~~~--~~~v~v~aG~ 100 (298)
T PRK13905 35 VEPADIEDLQEFLKLLKENNI-----------PVTVLGNGSNLLVRDGGIRGVVIRLGKGLNEI-EVE--GNRITAGAGA 100 (298)
T ss_pred EeCCCHHHHHHHHHHHHHcCC-----------CEEEEeCCceEEecCCCcceEEEEecCCcceE-Eec--CCEEEEECCC
Confidence 379999999999999998886 788888888765543 489999998 9887 554 5689999999
Q ss_pred cHHHHHHHHccCCce----eeeecCCCcccccccccCccCCCCCcccC-ccccceeEEEEEecCCcEEEEcCCCCCcchh
Q 013982 134 NMGQISRATCPMNLS----LAVVAELDDLTVGGLINGYGIEGSSHIYG-LFSDTVVAYEIVLADGQVVRATKDNEYKDLF 208 (432)
Q Consensus 134 ~~~~l~~~l~~~Gl~----~~~~p~~~~~tvGG~i~~gg~g~~~~~~G-~~~d~v~~~~vV~~~G~i~~~~~~~~~~dL~ 208 (432)
.+.+|.++|.++|+. ++..|+ ||||++.+++ +.|| .++|+|+++++|++||++++++++ |++
T Consensus 101 ~~~~L~~~l~~~Gl~gle~~~gipG----TVGGai~~Na-----G~~G~~~~d~v~~v~vv~~~G~~~~~~~~----e~~ 167 (298)
T PRK13905 101 PLIKLARFAAEAGLSGLEFAAGIPG----TVGGAVFMNA-----GAYGGETADVLESVEVLDRDGEIKTLSNE----ELG 167 (298)
T ss_pred cHHHHHHHHHHcCCCcchhccCCCc----chhHHHHHcC-----CcCceEhheeEEEEEEEeCCCCEEEEEHH----HcC
Confidence 999999999999983 333333 8999885332 2355 899999999999999999998764 999
Q ss_pred hhcccccCC--ceEEEEEEEEeEEcC
Q 013982 209 YAIPWSQGT--LGLLVSAEIKLIPIK 232 (432)
Q Consensus 209 ~a~~gs~G~--lGiVt~~~lkl~p~~ 232 (432)
|++|+|.+. +||||+++||+.|..
T Consensus 168 ~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 168 FGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred CcCccccCCCCCEEEEEEEEEEcCCC
Confidence 999998644 899999999999863
No 19
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.80 E-value=4.5e-19 Score=171.03 Aligned_cols=199 Identities=19% Similarity=0.233 Sum_probs=160.0
Q ss_pred ccccccccccCC---CCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCC---cccC--C---CeEEEEcCCCC
Q 013982 47 DVKSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNV---DYKR--A---RHFEVDLSAFR 115 (432)
Q Consensus 47 ~~w~~~~~~~~~---~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~---~~~~--~---~gvvIdl~~l~ 115 (432)
|+|...++..|. -|...++|..|++.+.++|. -..++|+|++ .+.+ + .-+.+|++.||
T Consensus 151 ~Lregkf~RiPDiVvWP~chdevVkiv~lA~khN~-----------~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmn 219 (613)
T KOG1233|consen 151 NLREGKFPRIPDIVVWPKCHDEVVKIVELAMKHNC-----------AIIPIGGGTSVSNALDCPETEKRAIISLDTSQMN 219 (613)
T ss_pred HHhcCccCCCCceEecccchHHHHHHHHHHhhcCe-----------EEEEeCCcccccccccCCcccceeEEEecHHhhh
Confidence 345554444444 57788888888888888774 2233343332 2221 1 22457888999
Q ss_pred CceEEeCCCcEEEEcCCccHHHHHHHHccCCceeeeec-CCCcccccccccCccCCCCCcccCccccceeEEEEEecCCc
Q 013982 116 NILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVA-ELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQ 194 (432)
Q Consensus 116 ~i~~id~~~~~v~v~~G~~~~~l~~~l~~~Gl~~~~~p-~~~~~tvGG~i~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~ 194 (432)
+|+-+|.++-++++|+|+...+|.+.|.+.|++...-| +....|+||+++..+.||.-..||++.|.|+.+++|+|.|.
T Consensus 220 riLWidreNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Gi 299 (613)
T KOG1233|consen 220 RILWIDRENLTCRAEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGI 299 (613)
T ss_pred heeEeccccceEEEecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcch
Confidence 99999999999999999999999999999999988777 67888999999999999999999999999999999999998
Q ss_pred EEE-Ec--CCCCCcchhhhcccccCCceEEEEEEEEeEEcCceEEEEEeccCCCHHHHHHHHHHHh
Q 013982 195 VVR-AT--KDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSF 257 (432)
Q Consensus 195 i~~-~~--~~~~~~dL~~a~~gs~G~lGiVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (432)
+-+ |. +-+.+||+.+-+.||+|+||+||++++|+.|.|++...-.. .|+++++-...++|..
T Consensus 300 iek~Cq~PRmS~GPDihh~IlGSEGTLGVitEvtiKirPiPe~~ryGS~-aFPNFEqGV~f~REvA 364 (613)
T KOG1233|consen 300 IEKQCQVPRMSSGPDIHHIILGSEGTLGVITEVTIKIRPIPEVKRYGSF-AFPNFEQGVNFFREVA 364 (613)
T ss_pred hhhhhcCCcccCCCCcceEEeccCcceeEEEEEEEEEeechhhhhcCcc-ccCcHHHHHHHHHHHH
Confidence 765 22 22478999999999999999999999999999997654443 4789999888888864
No 20
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.74 E-value=1e-17 Score=164.37 Aligned_cols=147 Identities=16% Similarity=0.174 Sum_probs=122.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCCC---eEEEEcCCCCCceEEeCCCcEEEEcCCcc
Q 013982 58 RQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRAR---HFEVDLSAFRNILDIDKDRMIAKVEPLVN 134 (432)
Q Consensus 58 ~~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~~---gvvIdl~~l~~i~~id~~~~~v~v~~G~~ 134 (432)
..|.+++||+++++++++++. |+.++|+|+|.+..++ |++|+|++|++| +++ +.+++|+||+.
T Consensus 41 v~p~~~edv~~~l~~a~~~~i-----------p~~v~GgGSNll~~d~g~~GvvI~l~~l~~i-~~~--~~~v~v~aG~~ 106 (305)
T PRK12436 41 VAPTNYDEIQEVIKYANKYNI-----------PVTFLGNGSNVIIKDGGIRGITVSLIHITGV-TVT--GTTIVAQCGAA 106 (305)
T ss_pred EecCCHHHHHHHHHHHHHcCC-----------CEEEEcCCeEEEEeCCCeeEEEEEeCCcCcE-EEe--CCEEEEEeCCc
Confidence 379999999999999999887 8888898888776654 899999889988 776 45899999999
Q ss_pred HHHHHHHHccCCce----eeeecCCCcccccccccCccCCCCCcccC-ccccceeEEEEEecCCcEEEEcCCCCCcchhh
Q 013982 135 MGQISRATCPMNLS----LAVVAELDDLTVGGLINGYGIEGSSHIYG-LFSDTVVAYEIVLADGQVVRATKDNEYKDLFY 209 (432)
Q Consensus 135 ~~~l~~~l~~~Gl~----~~~~p~~~~~tvGG~i~~gg~g~~~~~~G-~~~d~v~~~~vV~~~G~i~~~~~~~~~~dL~~ 209 (432)
+.+|.+++.++|+. +...|+ ||||++.+|+ +.|| .+.|.+.+++++++||++++++++ |+.|
T Consensus 107 ~~~L~~~~~~~gl~Gle~~~giPG----tVGGav~~NA-----GayG~~~~dvl~~v~vv~~~G~v~~~~~~----e~~f 173 (305)
T PRK12436 107 IIDVSRIALDHNLTGLEFACGIPG----SVGGALYMNA-----GAYGGEISFVLTEAVVMTGDGELRTLTKE----AFEF 173 (305)
T ss_pred HHHHHHHHHHcCCccchhhcCCcc----chhHHHHhcC-----ccchhehheeeeEEEEEeCCCCEEEEEHH----HhcC
Confidence 99999999999985 223444 8999885432 2255 788999999999999999999886 8999
Q ss_pred hccccc--CCceEEEEEEEEeEEc
Q 013982 210 AIPWSQ--GTLGLLVSAEIKLIPI 231 (432)
Q Consensus 210 a~~gs~--G~lGiVt~~~lkl~p~ 231 (432)
+||.|. ....||++++|++.+.
T Consensus 174 ~YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 174 GYRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred cCCCCcCCCCCEEEEEEEEEEcCC
Confidence 999993 4467999999999764
No 21
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.74 E-value=1.2e-17 Score=163.54 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=120.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCCC---eEEEEcCC-CCCceEEeCCCcEEEEcCCcc
Q 013982 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRAR---HFEVDLSA-FRNILDIDKDRMIAKVEPLVN 134 (432)
Q Consensus 59 ~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~~---gvvIdl~~-l~~i~~id~~~~~v~v~~G~~ 134 (432)
.|.+++|++++++++++++. |+..+|+|||.+..++ |++|++++ ++.+ +.+ +.+++|+||+.
T Consensus 41 ~p~~~edl~~~v~~a~~~~i-----------p~~vlGgGSNllv~d~g~~gvVI~l~~~~~~i-~~~--~~~v~v~AG~~ 106 (302)
T PRK14652 41 RPADPDALSALLRAVRELGV-----------PLSILGGGANTLVADAGVRGVVLRLPQDFPGE-STD--GGRLVLGAGAP 106 (302)
T ss_pred EcCCHHHHHHHHHHHHHCCC-----------cEEEEcCCcceeecCCCEeeEEEEecCCcceE-Eec--CCEEEEECCCc
Confidence 79999999999999999886 8889999998876664 79999977 4444 443 46899999999
Q ss_pred HHHHHHHHccCCce----eeeecCCCcccccccccCccCCCCCcccCccccceeEEEEEecCCcEEEEcCCCCCcchhhh
Q 013982 135 MGQISRATCPMNLS----LAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYA 210 (432)
Q Consensus 135 ~~~l~~~l~~~Gl~----~~~~p~~~~~tvGG~i~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~~~~~~dL~~a 210 (432)
+.+|.+++.++|+. +..+|+ ||||++.+|+ +..+|.++|+|.++++|+++| +.+.+++ |+.|+
T Consensus 107 ~~~L~~~~~~~GL~GlE~l~gIPG----TvGGav~mNa----Ga~ggei~d~v~~v~vv~~~G-~~~~~~~----e~~f~ 173 (302)
T PRK14652 107 ISRLPARAHAHGLVGMEFLAGIPG----TLGGAVAMNA----GTKLGEMKDVVTAVELATADG-AGFVPAA----ALGYA 173 (302)
T ss_pred HHHHHHHHHHcCCcccccccCCCc----chhHHHHHcC----CCCceEhhheEEEEEEECCCC-cEEeehh----hcCcc
Confidence 99999999999994 334444 9999986554 246799999999999999999 5555554 99999
Q ss_pred ccccc-CCceEEEEEEEEeEEcC
Q 013982 211 IPWSQ-GTLGLLVSAEIKLIPIK 232 (432)
Q Consensus 211 ~~gs~-G~lGiVt~~~lkl~p~~ 232 (432)
+|+|. +.-||||+++|++.|..
T Consensus 174 YR~s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 174 YRTCRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred cceeccCCCeEEEEEEEEEecCC
Confidence 99984 33489999999999853
No 22
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.73 E-value=2.2e-17 Score=162.05 Aligned_cols=146 Identities=18% Similarity=0.187 Sum_probs=121.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCCC---eEEEEcCCCCCceEEeCCCcEEEEcCCcc
Q 013982 58 RQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRAR---HFEVDLSAFRNILDIDKDRMIAKVEPLVN 134 (432)
Q Consensus 58 ~~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~~---gvvIdl~~l~~i~~id~~~~~v~v~~G~~ 134 (432)
..|.+++||+++++++++++. |+..+|+|||.+..++ |++|++++|+++ +++. .+++||||+.
T Consensus 41 v~p~~~edv~~~v~~a~~~~i-----------p~~vlGgGSNll~~d~g~~GvvI~l~~l~~i-~~~~--~~v~v~aG~~ 106 (307)
T PRK13906 41 ITPTKNEEVQAVVKYAYQNEI-----------PVTYLGNGSNIIIREGGIRGIVISLLSLDHI-EVSD--DAIIAGSGAA 106 (307)
T ss_pred EEcCCHHHHHHHHHHHHHcCC-----------CEEEEcCceeEeecCCCcceEEEEecCccce-EEeC--CEEEEECCCc
Confidence 379999999999999999887 8888999998876654 899999889998 7764 4899999999
Q ss_pred HHHHHHHHccCCce----eeeecCCCcccccccccCccCCCCCccc-CccccceeEEEEEecCCcEEEEcCCCCCcchhh
Q 013982 135 MGQISRATCPMNLS----LAVVAELDDLTVGGLINGYGIEGSSHIY-GLFSDTVVAYEIVLADGQVVRATKDNEYKDLFY 209 (432)
Q Consensus 135 ~~~l~~~l~~~Gl~----~~~~p~~~~~tvGG~i~~gg~g~~~~~~-G~~~d~v~~~~vV~~~G~i~~~~~~~~~~dL~~ 209 (432)
+.+|.+++.++|+. +...|+ ||||++.+++ +.| |.++|+|+++++|+++|++++.+++ |+.|
T Consensus 107 ~~~l~~~~~~~Gl~GlE~~~gIPG----tVGGav~mNa-----GayGg~i~D~l~~v~vv~~~G~~~~~~~~----e~~f 173 (307)
T PRK13906 107 IIDVSRVARDYALTGLEFACGIPG----SIGGAVYMNA-----GAYGGEVKDCIDYALCVNEQGSLIKLTTK----ELEL 173 (307)
T ss_pred HHHHHHHHHHcCCccchhhcCCCc----cHhHHHHhhC-----CcchhhhhhheeEEEEEeCCCCEEEEEHH----HccC
Confidence 99999999999994 223343 7888874333 235 6899999999999999999999876 8999
Q ss_pred hccccc--CCceEEEEEEEEeEE
Q 013982 210 AIPWSQ--GTLGLLVSAEIKLIP 230 (432)
Q Consensus 210 a~~gs~--G~lGiVt~~~lkl~p 230 (432)
+||.|. ..--||++++|++.|
T Consensus 174 ~YR~S~~~~~~~ii~~~~~~l~~ 196 (307)
T PRK13906 174 DYRNSIIQKEHLVVLEAAFTLAP 196 (307)
T ss_pred cCCcccCCCCCEEEEEEEEEECC
Confidence 999984 223599999999976
No 23
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.72 E-value=3.7e-17 Score=163.03 Aligned_cols=147 Identities=17% Similarity=0.166 Sum_probs=123.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCCC---eEEEEcCCCCCceEEeCCCcEEEEcCCccH
Q 013982 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRAR---HFEVDLSAFRNILDIDKDRMIAKVEPLVNM 135 (432)
Q Consensus 59 ~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~~---gvvIdl~~l~~i~~id~~~~~v~v~~G~~~ 135 (432)
.|.+++|+++++++++.++. |+..+|+|||.+..|+ |++|+++ ++.+ +++.++.+++|++|+.|
T Consensus 38 ~p~s~edl~~~l~~a~~~~~-----------p~~vlGgGSNlLv~D~g~~GvVI~l~-~~~i-~i~~~~~~v~vgAG~~~ 104 (363)
T PRK13903 38 TCTSTEELVAAVRELDAAGE-----------PLLVLGGGSNLVIADDGFDGTVVRVA-TRGV-TVDCGGGLVRAEAGAVW 104 (363)
T ss_pred EeCCHHHHHHHHHHHHHCCC-----------CEEEEeCCeeEeECCCCccEEEEEeC-CCcE-EEeCCCCEEEEEcCCCH
Confidence 79999999999999999886 8889999999887764 7999987 5887 78766679999999999
Q ss_pred HHHHHHHccCCce----eeeecCCCcccccccc--cCccCCCCCcccCccccceeEEEEEecC-CcEEEEcCCCCCcchh
Q 013982 136 GQISRATCPMNLS----LAVVAELDDLTVGGLI--NGYGIEGSSHIYGLFSDTVVAYEIVLAD-GQVVRATKDNEYKDLF 208 (432)
Q Consensus 136 ~~l~~~l~~~Gl~----~~~~p~~~~~tvGG~i--~~gg~g~~~~~~G~~~d~v~~~~vV~~~-G~i~~~~~~~~~~dL~ 208 (432)
.+|.+++.++|+. +..+|+ ||||++ |+|++| +.+.|.|.++++++.+ |++++.+++ |++
T Consensus 105 ~~l~~~a~~~GL~GlE~laGIPG----TVGGAv~mNaGayG------~ei~D~l~sV~vvd~~~G~~~~~~~~----el~ 170 (363)
T PRK13903 105 DDVVARTVEAGLGGLECLSGIPG----SAGATPVQNVGAYG------QEVSDTITRVRLLDRRTGEVRWVPAA----DLG 170 (363)
T ss_pred HHHHHHHHHcCCccccccCCCCc----chhhHhhcCCChhH------HHHhhhEeEEEEEECCCCEEEEEEHH----Hcc
Confidence 9999999999985 334566 889987 444443 4789999999999965 999998765 999
Q ss_pred hhccccc---CCceEEEEEEEEeEEcC
Q 013982 209 YAIPWSQ---GTLGLLVSAEIKLIPIK 232 (432)
Q Consensus 209 ~a~~gs~---G~lGiVt~~~lkl~p~~ 232 (432)
|+||+|. ++.+|||+++|++.|..
T Consensus 171 f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 171 FGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred eeccccccCCCCCEEEEEEEEEEEcCC
Confidence 9999982 34789999999999874
No 24
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.71 E-value=5.9e-17 Score=157.63 Aligned_cols=148 Identities=24% Similarity=0.229 Sum_probs=122.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccC---CCeEEEEcCCCCCceEEeCCCcEEEEcCCcc
Q 013982 58 RQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKR---ARHFEVDLSAFRNILDIDKDRMIAKVEPLVN 134 (432)
Q Consensus 58 ~~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~---~~gvvIdl~~l~~i~~id~~~~~v~v~~G~~ 134 (432)
..|.+++||+++++++++++. |+..+|+|+|.+.. .++++|++++|+++ .+|+ +.+++|+||+.
T Consensus 17 v~p~s~edl~~~l~~a~~~~~-----------p~~vlGgGSNll~~d~~~~gvvi~l~~~~~~-~~~~-~~~v~v~aG~~ 83 (284)
T TIGR00179 17 VCPESIEQLVNVLDNAKEEDQ-----------PLLILGEGSNLLILDDGRGGVIINLGKGIDI-EDDE-GEYVHVGGGEN 83 (284)
T ss_pred EEeCCHHHHHHHHHHHHHcCC-----------CEEEEecceEEEEccCCcCeEEEECCCCceE-EEec-CCEEEEEcCCc
Confidence 379999999999999999887 88888888887654 37899999999887 6666 56999999999
Q ss_pred HHHHHHHHccCCc----eeeeecCCCcccccccccCccCCCCCcccCc-cccceeEEEEEecCCcEEEEcCCCCCcchhh
Q 013982 135 MGQISRATCPMNL----SLAVVAELDDLTVGGLINGYGIEGSSHIYGL-FSDTVVAYEIVLADGQVVRATKDNEYKDLFY 209 (432)
Q Consensus 135 ~~~l~~~l~~~Gl----~~~~~p~~~~~tvGG~i~~gg~g~~~~~~G~-~~d~v~~~~vV~~~G~i~~~~~~~~~~dL~~ 209 (432)
+.+|.+++.++|+ +++.+|+ ||||++.+++ +.||. +.|.|+++++|++||++++.+++ |+.|
T Consensus 84 ~~~l~~~~~~~Gl~GlE~l~giPG----tvGGai~mNA-----GayG~~i~d~l~~v~vv~~~G~~~~~~~~----~~~f 150 (284)
T TIGR00179 84 WHKLVKYALKNGLSGLEFLAGIPG----TVGGAVIMNA-----GAYGVEISEVLVYATILLATGKTEWLTNE----QLGF 150 (284)
T ss_pred HHHHHHHHHHCCCcccccCCCCCc----hHHHHHHHhc-----ccchhehhheEEEEEEEeCCCCEEEEEHH----Hccc
Confidence 9999999999999 6666666 7888874332 33665 55678999999999999999876 9999
Q ss_pred hccccc--CCc-eEEEEEEEEeEEc
Q 013982 210 AIPWSQ--GTL-GLLVSAEIKLIPI 231 (432)
Q Consensus 210 a~~gs~--G~l-GiVt~~~lkl~p~ 231 (432)
+||.|. ... .||++++|++.+.
T Consensus 151 ~YR~S~f~~~~~~iil~a~~~l~~~ 175 (284)
T TIGR00179 151 GYRTSIFQHKYVGLVLKAEFQLTLG 175 (284)
T ss_pred cCCccccCCCCcEEEEEEEEEeccc
Confidence 999984 333 6999999998553
No 25
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.63 E-value=2e-15 Score=147.59 Aligned_cols=150 Identities=17% Similarity=0.127 Sum_probs=120.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCC---CeEEEEcCCCC-CceEEeCCCcEEEEcCCcc
Q 013982 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRA---RHFEVDLSAFR-NILDIDKDRMIAKVEPLVN 134 (432)
Q Consensus 59 ~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~---~gvvIdl~~l~-~i~~id~~~~~v~v~~G~~ 134 (432)
.|.+++|++++++++++++. |+..+|+|||.+..+ +|++|++++++ ++ ..+.+..+++|++|+.
T Consensus 26 ~p~~~~dl~~~l~~~~~~~i-----------p~~vlG~GSNlL~~d~g~~GvVI~l~~~~~~i-~~~~~~~~v~v~AG~~ 93 (295)
T PRK14649 26 EPTTPDEAIAAAAWAEQRQL-----------PLFWLGGGSNLLVRDEGFDGLVARYRGQRWEL-HEHGDTAEVWVEAGAP 93 (295)
T ss_pred EcCCHHHHHHHHHHHHHCCC-----------CEEEEecceeEEEeCCCcCeEEEEecCCCcEE-EEeCCcEEEEEEcCCc
Confidence 69999999999999999886 888999999987664 68999998754 55 5565555899999999
Q ss_pred HHHHHHHHccCCceee-eecCCCcccccccc--cCccCCCCCcccCccccceeEEEEEecCCcEEEEcCCCCCcchhhhc
Q 013982 135 MGQISRATCPMNLSLA-VVAELDDLTVGGLI--NGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAI 211 (432)
Q Consensus 135 ~~~l~~~l~~~Gl~~~-~~p~~~~~tvGG~i--~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~~~~~~dL~~a~ 211 (432)
+.+|.+++.++||.-. ...+.+. ||||++ ++|++| +.++|.|.++++++.+|++++.+++ |++++|
T Consensus 94 ~~~l~~~~~~~GL~GlE~l~GIPG-TvGGa~~mNaGayg------~ei~d~l~~V~~~~~~g~~~~~~~~----el~f~Y 162 (295)
T PRK14649 94 MAGTARRLAAQGWAGLEWAEGLPG-TIGGAIYGNAGCYG------GDTATVLIRAWLLLNGSECVEWSVH----DFAYGY 162 (295)
T ss_pred HHHHHHHHHHcCCccccccCCCCc-chhHHHHhhccccc------eEhheeEEEEEEEeCCCCEEEEeHH----HcCccc
Confidence 9999999999998522 1112233 899976 343433 7899999999999999999998775 999999
Q ss_pred cccc--CC--------ceEEEEEEEEeEEc
Q 013982 212 PWSQ--GT--------LGLLVSAEIKLIPI 231 (432)
Q Consensus 212 ~gs~--G~--------lGiVt~~~lkl~p~ 231 (432)
|.|. .. --||++++|++.|.
T Consensus 163 R~S~~~~~~~~~~~~~~~ii~~~~~~l~~~ 192 (295)
T PRK14649 163 RTSVLKQLRADGITWRPPLVLAARFRLHRD 192 (295)
T ss_pred ceeecccccccccccCCeEEEEEEEEECCC
Confidence 9983 22 23999999999765
No 26
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.62 E-value=2.8e-15 Score=146.10 Aligned_cols=145 Identities=14% Similarity=0.138 Sum_probs=119.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCC---CeEEEEcCCCCCceEEeCCCcEEEEcCCccH
Q 013982 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRA---RHFEVDLSAFRNILDIDKDRMIAKVEPLVNM 135 (432)
Q Consensus 59 ~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~---~gvvIdl~~l~~i~~id~~~~~v~v~~G~~~ 135 (432)
.|.+.+++.++++++++ +. |+..+|.|||.+..| +|++|.+++|+.+ +++. ..++|+||+.+
T Consensus 39 ~p~s~eel~~~~~~~~~-~~-----------p~~vlG~GSNlLv~d~g~~gvVI~l~~~~~i-~i~~--~~v~v~AG~~l 103 (297)
T PRK14653 39 IPNSTNGFIETINLLKE-GI-----------EVKILGNGTNVLPKDEPMDFVVVSTERLDDI-FVDN--DKIICESGLSL 103 (297)
T ss_pred ecCCHHHHHHHHHHHhc-CC-----------CEEEEcCCeeEEEecCCccEEEEEeCCcCce-EEeC--CEEEEeCCCcH
Confidence 69999999999999998 76 899999999988765 5899999789998 8873 57999999999
Q ss_pred HHHHHHHccCCce----eeeecCCCcccccccccCccCCCCCcccCc-cccceeEEEEEecCCcEEEEcCCCCCcchhhh
Q 013982 136 GQISRATCPMNLS----LAVVAELDDLTVGGLINGYGIEGSSHIYGL-FSDTVVAYEIVLADGQVVRATKDNEYKDLFYA 210 (432)
Q Consensus 136 ~~l~~~l~~~Gl~----~~~~p~~~~~tvGG~i~~gg~g~~~~~~G~-~~d~v~~~~vV~~~G~i~~~~~~~~~~dL~~a 210 (432)
.+|.+++.++|+. +...|+ ||||++.+|+ +.||. ++|.|.++++++ +|++++.+++ |+.|.
T Consensus 104 ~~L~~~~~~~GL~GlE~l~gIPG----TVGGAv~mNA-----GayG~ei~d~l~~V~~~d-~g~v~~~~~~----e~~f~ 169 (297)
T PRK14653 104 KKLCLVAAKNGLSGFENAYGIPG----SVGGAVYMNA-----GAYGWETAENIVEVVAYD-GKKIIRLGKN----EIKFS 169 (297)
T ss_pred HHHHHHHHHCCCcchhhhcCCch----hHHHHHHHhC-----ccCchhhheeEEEEEEEC-CCEEEEEchh----hcccc
Confidence 9999999999992 334577 8999984433 12555 999999999999 7888888765 89999
Q ss_pred ccccc-CC--ceEEEEEEEEeEEcC
Q 013982 211 IPWSQ-GT--LGLLVSAEIKLIPIK 232 (432)
Q Consensus 211 ~~gs~-G~--lGiVt~~~lkl~p~~ 232 (432)
||.|. +. -.||++++|++.|..
T Consensus 170 YR~S~~~~~~~~iI~~a~f~L~~~~ 194 (297)
T PRK14653 170 YRNSIFKEEKDLIILRVTFKLKKGN 194 (297)
T ss_pred CccccCCCCCcEEEEEEEEEEecCC
Confidence 99883 21 239999999998753
No 27
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.58 E-value=1.6e-14 Score=138.41 Aligned_cols=147 Identities=22% Similarity=0.226 Sum_probs=126.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCC---CeEEEEcCCCCCceEEeCCCcEEEEcCCccH
Q 013982 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRA---RHFEVDLSAFRNILDIDKDRMIAKVEPLVNM 135 (432)
Q Consensus 59 ~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~---~gvvIdl~~l~~i~~id~~~~~v~v~~G~~~ 135 (432)
.|.+.+++.++++.+++.+. |++.+|.|||.+..+ ++++|.+.+++.+ +++.+...+++++|+.+
T Consensus 26 ~~~~~e~l~~~~~~~~~~~~-----------p~~ilG~GSNlLv~d~g~~gvvi~~~~~~~~-~~~~~~~~i~a~aG~~~ 93 (291)
T COG0812 26 EPRDIEELKAALKYAKAEDL-----------PVLILGGGSNLLVRDGGIGGVVIKLGKLNFI-EIEGDDGLIEAGAGAPW 93 (291)
T ss_pred ecCCHHHHHHHHHhhhhcCC-----------CEEEEecCceEEEecCCCceEEEEcccccce-eeeccCCeEEEccCCcH
Confidence 68899999999999988776 999999999988765 5899999888887 88877779999999999
Q ss_pred HHHHHHHccCCc----eeeeecCCCcccccccc--cCccCCCCCcccCccccceeEEEEEecCCcEEEEcCCCCCcchhh
Q 013982 136 GQISRATCPMNL----SLAVVAELDDLTVGGLI--NGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFY 209 (432)
Q Consensus 136 ~~l~~~l~~~Gl----~~~~~p~~~~~tvGG~i--~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~~~~~~dL~~ 209 (432)
.+|.+++.++|+ ++..+|+ ||||++ |+|++| +.+.|.+.++++++.+|++.+.+++ |+-|
T Consensus 94 ~~l~~~~~~~gl~GlE~l~gIPG----svGgav~mNaGAyG------~Ei~d~~~~v~~ld~~G~~~~l~~~----el~f 159 (291)
T COG0812 94 HDLVRFALENGLSGLEFLAGIPG----SVGGAVIMNAGAYG------VEISDVLVSVEVLDRDGEVRWLSAE----ELGF 159 (291)
T ss_pred HHHHHHHHHcCCcchhhhcCCCc----ccchhhhccCcccc------cchheeEEEEEEEcCCCCEEEEEHH----HhCc
Confidence 999999999998 3445666 899987 555555 6799999999999999999999876 9999
Q ss_pred hccccc--CCceEEEEEEEEeEEc
Q 013982 210 AIPWSQ--GTLGLLVSAEIKLIPI 231 (432)
Q Consensus 210 a~~gs~--G~lGiVt~~~lkl~p~ 231 (432)
+||.|. ....+|++++|++.|.
T Consensus 160 ~YR~S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 160 GYRTSPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred ccccCcCCCCCEEEEEEEEEeCCC
Confidence 999994 3339999999999875
No 28
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.57 E-value=1.6e-14 Score=140.51 Aligned_cols=146 Identities=13% Similarity=0.096 Sum_probs=123.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCCC----eEEEEcCCCCCceEEeCCCcEEEEcCCcc
Q 013982 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRAR----HFEVDLSAFRNILDIDKDRMIAKVEPLVN 134 (432)
Q Consensus 59 ~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~~----gvvIdl~~l~~i~~id~~~~~v~v~~G~~ 134 (432)
.|.+.++++++++++++.+. |+..+|.|||.+..|+ |++|.+.+|+.+ +++. ..++|++|+.
T Consensus 38 ~p~~~~eL~~~l~~~~~~~~-----------p~~vlG~GSNlLv~D~g~~~g~vi~~~~~~~i-~~~~--~~v~a~AG~~ 103 (302)
T PRK14650 38 TPKTIKDAEHIFKAAIEEKI-----------KIFILGGGSNILINDEEEIDFPIIYTGHLNKI-EIHD--NQIVAECGTN 103 (302)
T ss_pred ecCCHHHHHHHHHHHHHcCC-----------CEEEEeceeEEEEECCCccceEEEEECCcCcE-EEeC--CEEEEEeCCc
Confidence 68999999999999988876 8999999999988765 478888679888 7764 4699999999
Q ss_pred HHHHHHHHccCCce----eeeecCCCcccccccc--cCccCCCCCcccCccccceeEEEEEecCCcEEEEcCCCCCcchh
Q 013982 135 MGQISRATCPMNLS----LAVVAELDDLTVGGLI--NGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLF 208 (432)
Q Consensus 135 ~~~l~~~l~~~Gl~----~~~~p~~~~~tvGG~i--~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~~~~~~dL~ 208 (432)
+.+|.+++.++|+. +..+|+ ||||++ |+|++| +.++|.|.++++++.+|++++.+++ |+.
T Consensus 104 ~~~l~~~~~~~gl~GlE~l~gIPG----TVGGAv~mNAGayG------~ei~d~l~sV~~~d~~g~~~~~~~~----e~~ 169 (302)
T PRK14650 104 FEDLCKFALQNELSGLEFIYGLPG----TLGGAIWMNARCFG------NEISEILDKITFIDEKGKTICKKFK----KEE 169 (302)
T ss_pred HHHHHHHHHHcCCchhhhhcCCCc----chhHHHHhhCCccc------cchheeEEEEEEEECCCCEEEEEHH----HcC
Confidence 99999999999983 445666 999998 455554 6799999999999999999988776 999
Q ss_pred hhccccc--CCceEEEEEEEEeEEcC
Q 013982 209 YAIPWSQ--GTLGLLVSAEIKLIPIK 232 (432)
Q Consensus 209 ~a~~gs~--G~lGiVt~~~lkl~p~~ 232 (432)
++||.|. ..-.||++++|++.|..
T Consensus 170 f~YR~S~f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 170 FKYKISPFQNKNTFILKATLNLKKGN 195 (302)
T ss_pred cccccccCCCCCEEEEEEEEEEcCCC
Confidence 9999984 22369999999998754
No 29
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.54 E-value=3.1e-14 Score=140.46 Aligned_cols=146 Identities=15% Similarity=0.081 Sum_probs=122.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCC--CeEEEEcCCCCCceEEe--CCC-cEEEEcCCc
Q 013982 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRA--RHFEVDLSAFRNILDID--KDR-MIAKVEPLV 133 (432)
Q Consensus 59 ~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~--~gvvIdl~~l~~i~~id--~~~-~~v~v~~G~ 133 (432)
.|.+++++++++++++..+. |+..+|+|||.+.+| +|++|.+ +|+++ +++ .++ ..++|++|+
T Consensus 26 ~p~~~~el~~~~~~~~~~~~-----------p~~vlG~GSNlLv~D~~~g~vI~~-~~~~~-~~~~~~~~~~~v~a~AG~ 92 (334)
T PRK00046 26 EAESEEQLLEALADARAAGL-----------PVLVLGGGSNVLFTEDFDGTVLLN-RIKGI-EVLSEDDDAWYLHVGAGE 92 (334)
T ss_pred eeCCHHHHHHHHHHHHHcCC-----------CEEEEeceEEEEECCCCCEEEEEe-cCCce-EEEecCCCeEEEEEEcCC
Confidence 68999999999999998886 899999999988765 6888887 48888 773 222 389999999
Q ss_pred cHHHHHHHHccCCc----eeeeecCCCcccccccc--cCccCCCCCcccCccccceeEEEEEecC-CcEEEEcCCCCCcc
Q 013982 134 NMGQISRATCPMNL----SLAVVAELDDLTVGGLI--NGYGIEGSSHIYGLFSDTVVAYEIVLAD-GQVVRATKDNEYKD 206 (432)
Q Consensus 134 ~~~~l~~~l~~~Gl----~~~~~p~~~~~tvGG~i--~~gg~g~~~~~~G~~~d~v~~~~vV~~~-G~i~~~~~~~~~~d 206 (432)
.+.+|.+++.++|+ ++..+|+ ||||++ |+|++| +.+.|.|.++++++.+ |++++.+++ |
T Consensus 93 ~~~~l~~~~~~~gl~GlE~l~gIPG----TVGGAv~mNaGayG------~ei~d~l~~V~v~d~~~g~~~~~~~~----e 158 (334)
T PRK00046 93 NWHDLVLWTLQQGMPGLENLALIPG----TVGAAPIQNIGAYG------VELKDVCDYVEALDLATGEFVRLSAA----E 158 (334)
T ss_pred cHHHHHHHHHHcCchhhHHhcCCCc----chhHHHHhcCCcCc------ccHheeEEEEEEEECCCCcEEEEEHH----H
Confidence 99999999999998 3455677 999998 455554 6799999999999988 999998876 9
Q ss_pred hhhhccccc--CC---ceEEEEEEEEeEEc
Q 013982 207 LFYAIPWSQ--GT---LGLLVSAEIKLIPI 231 (432)
Q Consensus 207 L~~a~~gs~--G~---lGiVt~~~lkl~p~ 231 (432)
+.|+||.|. .. --||++++|++.|.
T Consensus 159 ~~f~YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 159 CRFGYRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cCcccccccCCCCCcCCEEEEEEEEEecCC
Confidence 999999993 32 35999999999885
No 30
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.48 E-value=2e-13 Score=134.73 Aligned_cols=148 Identities=12% Similarity=0.147 Sum_probs=118.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCC---CeEEEEcCCCCCceEEe---CCCcEEEEcCC
Q 013982 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRA---RHFEVDLSAFRNILDID---KDRMIAKVEPL 132 (432)
Q Consensus 59 ~p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~---~gvvIdl~~l~~i~~id---~~~~~v~v~~G 132 (432)
.|.+.+++++++++++..+. |+..+|.|||.+..| +|++|.+.+|+.+ ++. .+...++|++|
T Consensus 35 ~p~s~~el~~~l~~~~~~~~-----------p~~iLG~GSNlL~~D~g~~G~VI~l~~~~~i-~i~~~~~~~~~v~agAG 102 (354)
T PRK14648 35 EPRSCTQLRALIEEAQRARI-----------PLSLIGGGSNVLIADEGVPGLMLSLRRFRSL-HTQTQRDGSVLVHAGAG 102 (354)
T ss_pred eeCCHHHHHHHHHHHHHcCC-----------CEEEEeceeEEEEeCCCccEEEEEeCCcCce-EEeeccCCcEEEEEEeC
Confidence 69999999999999998886 899999999988776 5899998679887 652 22247999999
Q ss_pred ccHHHHHHHHccCCce----eeeecCCCcccccccc--cCccCCCCCcccCccccceeEEEEE-----------------
Q 013982 133 VNMGQISRATCPMNLS----LAVVAELDDLTVGGLI--NGYGIEGSSHIYGLFSDTVVAYEIV----------------- 189 (432)
Q Consensus 133 ~~~~~l~~~l~~~Gl~----~~~~p~~~~~tvGG~i--~~gg~g~~~~~~G~~~d~v~~~~vV----------------- 189 (432)
+.+.+|.+++.++|+. +..+|+ ||||++ |+|++| +.+.|.|.+++++
T Consensus 103 ~~~~~Lv~~~~~~gl~GlE~laGIPG----TVGGAv~mNAGAyG------~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~ 172 (354)
T PRK14648 103 LPVAALLAFCAHHALRGLETFAGLPG----SVGGAAYMNARCYG------RAIADCFHSARTLVLHPVRSRAKELPEVRK 172 (354)
T ss_pred CcHHHHHHHHHHcCCcchhhhcCCCc----chhhHhhhcCCccc------eEhhheEEEEEEEeccCccccccccccccc
Confidence 9999999999999983 445666 899998 455544 5799999999999
Q ss_pred ---ecCCcE-------------EEEcCCCCCcchhhhccccc--CC--------ceEEEEEEEEeEEcC
Q 013982 190 ---LADGQV-------------VRATKDNEYKDLFYAIPWSQ--GT--------LGLLVSAEIKLIPIK 232 (432)
Q Consensus 190 ---~~~G~i-------------~~~~~~~~~~dL~~a~~gs~--G~--------lGiVt~~~lkl~p~~ 232 (432)
+.+|++ .+.++ .|+.|+||.|. .. --||++++|++.|..
T Consensus 173 ~~~~~~g~~~~~~~~~~~~~~~~~~~~----~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 173 NAQDKRGECLGLDGGPFTCSSFQTVFA----RAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred ccccCCCceecccccccccccceEecH----HHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 466776 34433 49999999983 21 249999999998753
No 31
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.33 E-value=6.8e-12 Score=120.48 Aligned_cols=134 Identities=22% Similarity=0.274 Sum_probs=106.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCC---CeEEEEcCC-CCCceEEeCCCcEEEEcCCccH
Q 013982 60 KEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRA---RHFEVDLSA-FRNILDIDKDRMIAKVEPLVNM 135 (432)
Q Consensus 60 p~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~---~gvvIdl~~-l~~i~~id~~~~~v~v~~G~~~ 135 (432)
|.+.+++.+++ +. |+..+|.|||.+..| +|++|.+++ ++.+ +++ . +|++|+.+
T Consensus 26 p~~~~~l~~~~------~~-----------p~~vlG~GSNlL~~D~g~~g~vI~l~~~~~~~-~~~--~---~a~AG~~~ 82 (273)
T PRK14651 26 VETHEQLAEAT------EA-----------PYRVLGGGSNLLVSDAGVPERVIRLGGEFAEW-DLD--G---WVGGGVPL 82 (273)
T ss_pred cCCHHHHHHHH------CC-----------CeEEEeceeEEEEcCCCcceEEEEECCcceeE-eEC--C---EEECCCcH
Confidence 66666666654 23 889999999998876 588998865 6655 543 2 69999999
Q ss_pred HHHHHHHccCCc----eeeeecCCCcccccccc--cCccCCCCCcccCccccceeEEEEEecCCcEEEEcCCCCCcchhh
Q 013982 136 GQISRATCPMNL----SLAVVAELDDLTVGGLI--NGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFY 209 (432)
Q Consensus 136 ~~l~~~l~~~Gl----~~~~~p~~~~~tvGG~i--~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~~~~~~dL~~ 209 (432)
.+|.+++.++|+ ++..+|+ ||||++ |+|++| +.+.|.|.++++++ +|++++.+++ |+.+
T Consensus 83 ~~l~~~~~~~gl~GlE~l~gIPG----TVGGAv~mNaGayG------~ei~d~l~~V~~~~-~g~~~~~~~~----e~~f 147 (273)
T PRK14651 83 PGLVRRAARLGLSGLEGLVGIPA----QVGGAVKMNAGTRF------GEMADALHTVEIVH-DGGFHQYSPD----ELGF 147 (273)
T ss_pred HHHHHHHHHCCCcchhhhcCCCc----chhhHHHhhCCccc------cChheeEEEEEEEE-CCCEEEEEHH----Hccc
Confidence 999999999998 3555677 999998 444444 67999999999997 8999998876 9999
Q ss_pred hccccc-CCceEEEEEEEEeEEc
Q 013982 210 AIPWSQ-GTLGLLVSAEIKLIPI 231 (432)
Q Consensus 210 a~~gs~-G~lGiVt~~~lkl~p~ 231 (432)
+||.|. -.--||++++|++.|.
T Consensus 148 ~YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 148 GYRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred cccccCCCCCEEEEEEEEEECCC
Confidence 999984 2225999999999774
No 32
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.02 E-value=8.1e-10 Score=105.22 Aligned_cols=120 Identities=21% Similarity=0.136 Sum_probs=93.4
Q ss_pred CceeecccCCcccCCC--eEEEEcCCCCCceEEeCCCcEEEEcCCccHHHHHHHHccCCce----eeeecCCCccccccc
Q 013982 90 PWIAVGMRNVDYKRAR--HFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLS----LAVVAELDDLTVGGL 163 (432)
Q Consensus 90 ~~~~~G~~~~~~~~~~--gvvIdl~~l~~i~~id~~~~~v~v~~G~~~~~l~~~l~~~Gl~----~~~~p~~~~~tvGG~ 163 (432)
|+..+|.|||.+..|+ +.++-+++|+.+ +++. .+++|++|+.+.+|.+++.++|+. +..+|+ ||||+
T Consensus 33 p~~vlG~GSNlLv~D~g~~~vv~~~~~~~~-~~~~--~~v~~~AG~~l~~l~~~~~~~gl~GlE~l~gIPG----tVGGA 105 (257)
T PRK13904 33 DGQIIGGANNLLISPNPKNLAILGKNFDYI-KIDG--ECLEIGGATKSGKIFNYAKKNNLGGFEFLGKLPG----TLGGL 105 (257)
T ss_pred CeEEEeceeEEEEecCCccEEEEccCcCeE-EEeC--CEEEEEcCCcHHHHHHHHHHCCCchhhhhcCCCc----cHHHH
Confidence 8899999999887652 334434568887 7754 479999999999999999999983 445676 99999
Q ss_pred c--cCccCCCCCcccCccccceeEEEEEecCCcEEEEcCCCCCcchhhhcccccCCceEEEEEEEEeEEcC
Q 013982 164 I--NGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIK 232 (432)
Q Consensus 164 i--~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~~~~~~dL~~a~~gs~G~lGiVt~~~lkl~p~~ 232 (432)
+ |+|++| +.++|.|.++++++ | +.++ .|+.|+||.|.=. .||++++|++.|..
T Consensus 106 v~mNaGa~g------~ei~d~l~~V~~~~--~---~~~~----~e~~f~YR~S~~~-~iIl~a~f~l~~~~ 160 (257)
T PRK13904 106 VKMNAGLKE------YEISNNLESICTNG--G---WIEK----EDIGFGYRSSGIN-GVILEARFKKTHGF 160 (257)
T ss_pred HHhcCCcCc------cchheeEEEEEEEe--e---EEeH----HHCcccccCcCCC-cEEEEEEEEECCCC
Confidence 8 444444 57999999999998 4 3444 4999999998422 49999999998854
No 33
>PRK09799 putative oxidoreductase; Provisional
Probab=94.41 E-value=0.044 Score=52.79 Aligned_cols=139 Identities=13% Similarity=0.163 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCCCeEEEEcCCCCCceEEeCCCcEEEEcCCccHHHHHHHH
Q 013982 63 DENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRAT 142 (432)
Q Consensus 63 ~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~~gvvIdl~~l~~i~~id~~~~~v~v~~G~~~~~l~~~l 142 (432)
|+++++++++.++++. ......|+....... ...+..++||++++ .+-.|..+++.+++|+++++.++.+..
T Consensus 8 P~sl~Ea~~ll~~~~~--~a~ilAGGT~L~~~~-----~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~~ 79 (258)
T PRK09799 8 PDSVEQALELKRRYQD--EAVWFAGGSKLNATP-----TRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDAR 79 (258)
T ss_pred CCCHHHHHHHHHhCCC--CCEEEecCCChHhhh-----CCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhCc
Confidence 4456666666666532 233444444332111 11235789999975 443445556789999999999998754
Q ss_pred ccC-Cc-----eeeeecC-CCcccccccccCccCCCCCcccCcccc--ceeEEEEEecCCcEEEEcCCCCCcchhhhccc
Q 013982 143 CPM-NL-----SLAVVAE-LDDLTVGGLINGYGIEGSSHIYGLFSD--TVVAYEIVLADGQVVRATKDNEYKDLFYAIPW 213 (432)
Q Consensus 143 ~~~-Gl-----~~~~~p~-~~~~tvGG~i~~gg~g~~~~~~G~~~d--~v~~~~vV~~~G~i~~~~~~~~~~dL~~a~~g 213 (432)
.-. .+ .+. .|. -+..|+||++.+... .+.+.- ..+..+|+..+|+.+.. .|+|-+
T Consensus 80 ~~~~~L~~a~~~va-s~qIRN~aTiGGNl~~a~p------~sD~~p~LlAldA~v~l~~~r~vpl------~~f~~g--- 143 (258)
T PRK09799 80 FIPAALREALGFVY-SRHLRNQSTIGGEIAARQE------ESVLLPVLLALDAELVFGNGETLSI------EDYLAC--- 143 (258)
T ss_pred ccHHHHHHHHHHhC-CHHHhccchhHHHhhcCCc------cHHHHHHHHHcCCEEEEecCcEEeH------HHhcCC---
Confidence 221 11 122 232 467799999954321 121111 22355666666633322 244432
Q ss_pred ccCCceEEEEEEEE
Q 013982 214 SQGTLGLLVSAEIK 227 (432)
Q Consensus 214 s~G~lGiVt~~~lk 227 (432)
.. -.|||++.+.
T Consensus 144 ~~--~Eil~~I~iP 155 (258)
T PRK09799 144 PC--DRLLTEIIIP 155 (258)
T ss_pred CC--CcEEEEEEcC
Confidence 22 2588888765
No 34
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=92.96 E-value=0.017 Score=52.02 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=38.6
Q ss_pred CeEEEEcCCCCCceEEeCCCcEEEEcCCccHHHHHHHH---------ccCCceeeeecCCCcccccccccCc
Q 013982 105 RHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRAT---------CPMNLSLAVVAELDDLTVGGLINGY 167 (432)
Q Consensus 105 ~gvvIdl~~l~~i~~id~~~~~v~v~~G~~~~~l~~~l---------~~~Gl~~~~~p~~~~~tvGG~i~~g 167 (432)
...+||++++..+-.|..+++.+++|+++++.++.+.- .++-..+...+--+..|+||+++++
T Consensus 44 ~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l~~~~~~~~~~p~L~~~~~~ias~~IRn~aTiGGNl~~~ 115 (171)
T PF00941_consen 44 PDVLIDLSRIPELNGISEDDGGLRIGAAVTLSELEESPLIQQYFPALAQAARRIASPQIRNRATIGGNLCNA 115 (171)
T ss_dssp -SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHTT-BHHHHHHHT
T ss_pred cceEEEeEEecccccEEEeccEEEECCCccHHHHhhcchhhhhHHHHHHHHHHhCCHhHeeeeeeccccccC
Confidence 56899998854443444446789999999999998861 1111122211224677999999543
No 35
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=91.46 E-value=0.2 Score=48.18 Aligned_cols=95 Identities=11% Similarity=0.128 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCCCeEEEEcCCCCCceEEeCCCcEEEEcCCccHHHHHHHH
Q 013982 63 DENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRAT 142 (432)
Q Consensus 63 ~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~~gvvIdl~~l~~i~~id~~~~~v~v~~G~~~~~l~~~l 142 (432)
|++++++++++++... ......|+..... . .. ..+..++||++++ .+-.|..+++.+++|++++..++.+..
T Consensus 7 P~sl~Ea~~ll~~~~~--~a~~lAGGTdL~~-~--~~--~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~ 78 (257)
T TIGR03312 7 PESTIQALELKKRHTG--VAVWFAGGSKLNA-T--PT--RTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNE 78 (257)
T ss_pred CCCHHHHHHHHHhCCC--CCEEEecCcchhh-h--hc--ccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCc
Confidence 4556666666665431 2333444443321 1 11 1134588999875 443444455689999999999997642
Q ss_pred ccCC-c-----eeeeecC-CCcccccccccC
Q 013982 143 CPMN-L-----SLAVVAE-LDDLTVGGLING 166 (432)
Q Consensus 143 ~~~G-l-----~~~~~p~-~~~~tvGG~i~~ 166 (432)
.-.+ + .+. .|. -+..|+||++++
T Consensus 79 ~~~~~L~~aa~~va-~~qIRN~gTlGGNl~~ 108 (257)
T TIGR03312 79 LTPAALKEALGFVY-SRHIRNQATIGGEIAA 108 (257)
T ss_pred chHHHHHHHHHHhC-CHHHhccccHHHHhhc
Confidence 1111 1 122 333 467799999954
No 36
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=91.15 E-value=0.31 Score=51.08 Aligned_cols=150 Identities=10% Similarity=0.032 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCCCeEEEEcCCCCCceEEeCCCcEEEEcCCccHHHHHH
Q 013982 61 EHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISR 140 (432)
Q Consensus 61 ~~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~~gvvIdl~~l~~i~~id~~~~~v~v~~G~~~~~l~~ 140 (432)
..|.+++++.++++++. ......|+..... .. .........+||++++..+-.|..+++.+++|+++++.++.+
T Consensus 196 ~~P~sl~Ea~~ll~~~~---~a~lvAGGTdl~~-~~--~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el~~ 269 (467)
T TIGR02963 196 IAPTTLDDLAALKAAHP---DARIVAGSTDVGL-WV--TKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDAYA 269 (467)
T ss_pred ECCCCHHHHHHHHhhCC---CCEEEecCcchHH-HH--hcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHHHH
Confidence 34566667777766543 2333333332210 00 001123468899988544433444456899999999999987
Q ss_pred HHccC--Cc-----eeeeec-CCCcccccccccCccCCCCCcccCccccc--ee--EEEEEecCCcEEEEcCCCCCcchh
Q 013982 141 ATCPM--NL-----SLAVVA-ELDDLTVGGLINGYGIEGSSHIYGLFSDT--VV--AYEIVLADGQVVRATKDNEYKDLF 208 (432)
Q Consensus 141 ~l~~~--Gl-----~~~~~p-~~~~~tvGG~i~~gg~g~~~~~~G~~~d~--v~--~~~vV~~~G~i~~~~~~~~~~dL~ 208 (432)
.+.++ .+ .+. .| --+..|+||++.+.... +...=- .+ .+++..++|+ .++.- .|.|
T Consensus 270 ~l~~~~p~L~~a~~~ia-s~qIRN~aTiGGNI~~asP~------sD~~p~LlALdA~v~l~~~~G~-R~vpl----~dF~ 337 (467)
T TIGR02963 270 ALAKRYPELGELLRRFA-SLQIRNAGTLGGNIANGSPI------GDSPPALIALGARLTLRKGEGR-RTLPL----EDFF 337 (467)
T ss_pred HHHHHhHHHHHHHHHhC-CHHHcCceecccccccCCCc------hHHHHHHHHcCCEEEEEcCCCc-EEEeH----HHhh
Confidence 66543 11 222 23 24677999999543211 111111 12 3344455563 22221 2555
Q ss_pred hhcccc-cCCceEEEEEEEEe
Q 013982 209 YAIPWS-QGTLGLLVSAEIKL 228 (432)
Q Consensus 209 ~a~~gs-~G~lGiVt~~~lkl 228 (432)
-+++-. ...--||+++.+..
T Consensus 338 ~g~~kt~L~~~EiI~~I~iP~ 358 (467)
T TIGR02963 338 IDYGKTDRQPGEFVEALHVPR 358 (467)
T ss_pred cccccccCCCCceEEEEEecC
Confidence 443322 22335999998764
No 37
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=88.48 E-value=0.5 Score=46.35 Aligned_cols=151 Identities=11% Similarity=0.072 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCCCeEEEEcCCCCCceEEe-CCCcEEEEcCCccHHHHHH
Q 013982 62 HDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDID-KDRMIAKVEPLVNMGQISR 140 (432)
Q Consensus 62 ~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~~gvvIdl~~l~~i~~id-~~~~~v~v~~G~~~~~l~~ 140 (432)
.|++++++++++++.. ......|+...... . .....+...+||++++..+-.|. .+++.+++|+++++.++.+
T Consensus 9 ~P~sl~Ea~~ll~~~~---~a~ivaGGTdl~~~-~--~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~~ 82 (291)
T PRK09971 9 EAATLEEAIELLADNP---QAKLIAGGTDVLIQ-L--HHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQIIE 82 (291)
T ss_pred CCCCHHHHHHHHHhCC---CCEEEeccchHHHH-H--hCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHhc
Confidence 3455666666666542 23333443332110 0 00112357889998754433334 2345799999999999986
Q ss_pred H--HccCC-------ceeeeecC-CCcccccccccCccCCCCCcccCcccc--cee--EEEEEecCCcEEEEcCCCCCcc
Q 013982 141 A--TCPMN-------LSLAVVAE-LDDLTVGGLINGYGIEGSSHIYGLFSD--TVV--AYEIVLADGQVVRATKDNEYKD 206 (432)
Q Consensus 141 ~--l~~~G-------l~~~~~p~-~~~~tvGG~i~~gg~g~~~~~~G~~~d--~v~--~~~vV~~~G~i~~~~~~~~~~d 206 (432)
. +.++- -.+. .|. -+..|+||++.++... +.+.- ..+ .+++..++|+ .+..- .|
T Consensus 83 ~~~i~~~~p~L~~a~~~ia-~~qIRN~aTiGGNi~~a~p~------sD~~~~Llal~A~v~i~~~~g~-R~vp~----~d 150 (291)
T PRK09971 83 DPIIQKHLPALAEAAVSIG-GPQIRNVATIGGNICNGATS------ADSAPPLFALDAKLEIHSPNGV-RFVPI----NG 150 (291)
T ss_pred ChHHHHHhHHHHHHHHHhC-CHHHhcceecccccccCCcc------hhHHHHHHHcCCEEEEEcCCCc-EEEEH----HH
Confidence 1 11110 0122 232 4677999999643221 11110 112 2344455663 22222 25
Q ss_pred hhhhcccc-cCCceEEEEEEEEeEE
Q 013982 207 LFYAIPWS-QGTLGLLVSAEIKLIP 230 (432)
Q Consensus 207 L~~a~~gs-~G~lGiVt~~~lkl~p 230 (432)
+|.+..-. ...--+||++.+...+
T Consensus 151 f~~g~~~t~l~~~Eil~~I~iP~~~ 175 (291)
T PRK09971 151 FYTGPGKVSLEHDEILVAFIIPPEP 175 (291)
T ss_pred hcCCccccccCCCceEEEEEeCCCC
Confidence 55432211 1223499999887543
No 38
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=88.40 E-value=0.46 Score=45.89 Aligned_cols=97 Identities=11% Similarity=0.163 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCCCeEEEEcCCCCCceEEeCCCcEEEEcCCccHHHHHHH--
Q 013982 64 ENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRA-- 141 (432)
Q Consensus 64 ~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~~gvvIdl~~l~~i~~id~~~~~v~v~~G~~~~~l~~~-- 141 (432)
++++++++.+.++. ......|+.... ..... ........+||++++..+-.|+.+++.+++|+++++.++.+.
T Consensus 2 ~sl~ea~~ll~~~~---~a~ivaGgT~l~-~~~~~-~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~~ 76 (264)
T TIGR03199 2 AALDEAWSLLEKAP---DSTFVSGSTLLQ-LQWEK-GTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPL 76 (264)
T ss_pred CCHHHHHHHHHhCC---CCEEEEccChHH-HHHhc-CcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhChH
Confidence 45667777766642 223333333221 11101 001124688999986555455556678999999999999752
Q ss_pred HccC--Cc-----eeeeecC-CCcccccccccC
Q 013982 142 TCPM--NL-----SLAVVAE-LDDLTVGGLING 166 (432)
Q Consensus 142 l~~~--Gl-----~~~~~p~-~~~~tvGG~i~~ 166 (432)
+.++ .+ .+. .|. -+..|+||+++.
T Consensus 77 i~~~~p~L~~a~~~ia-~~qIRN~aTlGGNl~~ 108 (264)
T TIGR03199 77 IKRALPCFVDAASAIA-APGVRNRATIGGNIAS 108 (264)
T ss_pred hHhHhHHHHHHHHHhc-CHHHhcceecHHhccC
Confidence 1110 01 121 232 467799999954
No 39
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=85.88 E-value=0.6 Score=46.40 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=38.6
Q ss_pred CCeEEEEcCCCCCceEEeCCCcEEEEcCCccHHHHHHH--Hcc-------CCceeeeecC-CCcccccccccC
Q 013982 104 ARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRA--TCP-------MNLSLAVVAE-LDDLTVGGLING 166 (432)
Q Consensus 104 ~~gvvIdl~~l~~i~~id~~~~~v~v~~G~~~~~l~~~--l~~-------~Gl~~~~~p~-~~~~tvGG~i~~ 166 (432)
....+||++++..+-.|..+.+.+++|+++++.++.+. +.. .=-.+. .|. -+..|+||++.+
T Consensus 45 ~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~~~~i~~~~p~L~~a~~~ia-s~qIRN~aTiGGNi~~ 116 (321)
T TIGR03195 45 QPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAEDALVRTRWPALAQAARAVA-GPTHRAAATLGGNLCL 116 (321)
T ss_pred CCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhhChhhHhHhHHHHHHHHHhC-CHHHhCceecHHhhhc
Confidence 34688999875433233444567999999999999653 111 001122 232 467799999963
No 40
>PLN02906 xanthine dehydrogenase
Probab=85.10 E-value=1.9 Score=51.10 Aligned_cols=98 Identities=8% Similarity=-0.010 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHhCCCCCceeeecCCCceeecccCCcccCCCeEEEEcCCCCCceEEeCCCcEEEEcCCccHHHHHHH
Q 013982 62 HDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRA 141 (432)
Q Consensus 62 ~~~~v~~iv~~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~~~gvvIdl~~l~~i~~id~~~~~v~v~~G~~~~~l~~~ 141 (432)
.|.++++++++.+++. ......|+..... .......+...+||++++..+-.|..+++.+++|+++++.++.+.
T Consensus 233 ~P~tl~ea~~ll~~~~---~a~ivAGGTdl~~---~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~~~ 306 (1319)
T PLN02906 233 RPTSLQHLLELKAEYP---DAKLVVGNTEVGI---EMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQNL 306 (1319)
T ss_pred CcCCHHHHHHHHHhCC---CCEEEEcCchhHH---HhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHHHH
Confidence 4456666666666543 2223333322210 011111245789999885444344445568999999999999986
Q ss_pred HccCC-----c-------------eeeeec-CCCcccccccccC
Q 013982 142 TCPMN-----L-------------SLAVVA-ELDDLTVGGLING 166 (432)
Q Consensus 142 l~~~G-----l-------------~~~~~p-~~~~~tvGG~i~~ 166 (432)
|.+.= + .+. .| --+..|+||++++
T Consensus 307 l~~~i~~~~~~~~~~~p~L~~~~~~ia-s~qIRN~aTiGGNI~~ 349 (1319)
T PLN02906 307 FRKVVKERPAHETSACKAFIEQLKWFA-GTQIRNVASIGGNICT 349 (1319)
T ss_pred HHHHhhhcchhhhHHHHHHHHHHHHhC-CHhhcCceechhhhcc
Confidence 54320 0 122 23 2467799999954
No 41
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=83.49 E-value=0.85 Score=42.61 Aligned_cols=49 Identities=10% Similarity=-0.008 Sum_probs=35.3
Q ss_pred chhhhhhhhcccchhc----ccCCcceEEEeecccccHHHHHHHHHHhcCCcce
Q 013982 371 PKVSLLKATQGEAIRN----YYHQNHVIQDMLVPLYKVGDALEWQHREVEVNMS 420 (432)
Q Consensus 371 ~~~~~~r~~~~~ai~~----~~~~~~v~eDv~vP~~~l~e~i~~~~~~~~~~p~ 420 (432)
.++|..|+...+.++. ..+ ..+++|++||.++++++++.++++++++.+
T Consensus 104 ~~~W~~R~~~~~~~~~~~~~~~~-~~~~~dv~vp~~~l~~~~~~~~~~~~~~~~ 156 (248)
T PF02913_consen 104 ERLWAIRRAIMPYLRDAAGRAGP-VWDTEDVAVPPSRLPEFLREIRALLREYGL 156 (248)
T ss_dssp STHHHHHHHHCCGGGCSHCTTEE-EEEEEEEESCHHHHHHHHHHHHHHHHHCTE
T ss_pred HhhhhhhhhhcccccccccccCC-ceeeeeecccchhhhhHHHhhhhhhhhccc
Confidence 3556666655552211 111 167899999999999999999999988873
No 42
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=80.68 E-value=2.9 Score=41.90 Aligned_cols=100 Identities=16% Similarity=0.055 Sum_probs=58.7
Q ss_pred eEEEEcCCCCCceEEeCCCcEEEEcCCccHHHHHHHHccCCc-------eeeeecCCCcccccccccCccCCCCCcccCc
Q 013982 106 HFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNL-------SLAVVAELDDLTVGGLINGYGIEGSSHIYGL 178 (432)
Q Consensus 106 gvvIdl~~l~~i~~id~~~~~v~v~~G~~~~~l~~~l~~~Gl-------~~~~~p~~~~~tvGG~i~~gg~g~~~~~~G~ 178 (432)
..+|-.+++..+-.|+...+.+++++|+++.+.++.|..+=- .+....--+..|+||+|++|.- -|.
T Consensus 246 ~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSP------IGD 319 (493)
T COG4630 246 NPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSP------IGD 319 (493)
T ss_pred CCeEEecchhhhheeeecCCcEEEccCccHHHHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCc------CCC
Confidence 345555565555455666788999999999999999876421 1111222356699999954321 122
Q ss_pred ccc--ceeEEEEEecCCcEEEEcCCCCCcchhhhcccc
Q 013982 179 FSD--TVVAYEIVLADGQVVRATKDNEYKDLFYAIPWS 214 (432)
Q Consensus 179 ~~d--~v~~~~vV~~~G~i~~~~~~~~~~dL~~a~~gs 214 (432)
.-- ..++.++++-.|+-.+.- +-.|+|-+|.--
T Consensus 320 tPPaLIALgA~ltLr~g~~~Rtl---PLe~~Fi~Y~kq 354 (493)
T COG4630 320 TPPALIALGATLTLRSGDGRRTL---PLEDYFIAYGKQ 354 (493)
T ss_pred CCchhhhcCcEEEEEecCCcccc---cHHHHHHHhhhh
Confidence 111 235666776666533321 334777776543
No 43
>COG4802 FtrB Ferredoxin-thioredoxin reductase, catalytic subunit [Energy production and conversion]
Probab=78.09 E-value=0.91 Score=36.67 Aligned_cols=28 Identities=14% Similarity=-0.113 Sum_probs=23.8
Q ss_pred ccHHHHHHHHHHhcCCcceeeccccCCC
Q 013982 402 YKVGDALEWQHREVEVNMSFSAPAFNYS 429 (432)
Q Consensus 402 ~~l~e~i~~~~~~~~~~p~~~~p~~~~~ 429 (432)
+-++++++.+-.-.++|..|+||||++.
T Consensus 29 e~~~~v~~gL~~~ke~yG~~~CPCRl~~ 56 (110)
T COG4802 29 EFTAEVLRGLASNKERYGYPSCPCRLVT 56 (110)
T ss_pred HHHHHHHHHHHHhHHHhCCCCCCeeccc
Confidence 4567888888888899999999999875
No 44
>PLN00192 aldehyde oxidase
Probab=76.24 E-value=5.1 Score=47.56 Aligned_cols=99 Identities=11% Similarity=0.053 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHhC-CCCCceeeecCCCceeecccCCcccCCCeEEEEcCCCCCceEEeCCCcEEEEcCCccHHHHHH
Q 013982 62 HDENVKKVVKRLKERN-PSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISR 140 (432)
Q Consensus 62 ~~~~v~~iv~~~~~~~-~~~~~~~~~g~~~~~~~G~~~~~~~~~~gvvIdl~~l~~i~~id~~~~~v~v~~G~~~~~l~~ 140 (432)
.|.++++++++..++. .......+.|+.....+ .. ......+||++++..+-.|..+++.+++|+++++.++.+
T Consensus 238 ~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~-k~----~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~~ 312 (1344)
T PLN00192 238 TPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYY-KD----EELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAIE 312 (1344)
T ss_pred CcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceee-ec----cCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHHH
Confidence 4566677777766652 01123344444444222 11 123468999987544434444556899999999999987
Q ss_pred HHccCCc-------------eeeeec-CCCcccccccccC
Q 013982 141 ATCPMNL-------------SLAVVA-ELDDLTVGGLING 166 (432)
Q Consensus 141 ~l~~~Gl-------------~~~~~p-~~~~~tvGG~i~~ 166 (432)
.+..+-. .+. .+ --+..|+||++++
T Consensus 313 ~l~~~~~~~~~~p~L~~~~~~vA-s~qIRN~aTlGGNI~~ 351 (1344)
T PLN00192 313 ALREESKSEYVFKKIADHMEKIA-SRFVRNTGSIGGNLVM 351 (1344)
T ss_pred HHHhhccccchHHHHHHHHHHhc-Chhhccceechhhhcc
Confidence 7654421 121 22 2467799999954
No 45
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=73.46 E-value=4.6 Score=47.92 Aligned_cols=61 Identities=11% Similarity=0.122 Sum_probs=41.2
Q ss_pred CeEEEEcCCCCCceEEeCCCcEEEEcCCccHHHHHHHHccC---------C----c-----eeeeec-CCCccccccccc
Q 013982 105 RHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPM---------N----L-----SLAVVA-ELDDLTVGGLIN 165 (432)
Q Consensus 105 ~gvvIdl~~l~~i~~id~~~~~v~v~~G~~~~~l~~~l~~~---------G----l-----~~~~~p-~~~~~tvGG~i~ 165 (432)
...+||+++...+-.|..+++.+++|+++++.++.+.|.+. . + .+. .| --+..|+||+++
T Consensus 278 ~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~~~l~~~i~~~p~~~~~~~p~L~~a~~~ia-s~qIRN~gTlGGNi~ 356 (1330)
T TIGR02969 278 HPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVKDILADVVQKLPEETTQTYRALLKHLGTLA-GSQIRNMASLGGHII 356 (1330)
T ss_pred CCeEEECCCChhhhcEEEcCCEEEEeccccHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHhC-Chhhcccccchhhcc
Confidence 45799998855544445556789999999999999865432 1 1 121 23 246779999995
Q ss_pred C
Q 013982 166 G 166 (432)
Q Consensus 166 ~ 166 (432)
+
T Consensus 357 ~ 357 (1330)
T TIGR02969 357 S 357 (1330)
T ss_pred c
Confidence 4
No 46
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=56.88 E-value=15 Score=38.27 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=32.7
Q ss_pred HccCCceeeeecCCCcccccccc-cCccCCCCCcccCccccceeEEEEEecCCcEEEEcC
Q 013982 142 TCPMNLSLAVVAELDDLTVGGLI-NGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATK 200 (432)
Q Consensus 142 l~~~Gl~~~~~p~~~~~tvGG~i-~~gg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~ 200 (432)
|..+|.-+| -|-|++ +|.+.| --.-...+-.|.|+.+|..||+|+++.+
T Consensus 278 LtANGIeLP--------DV~GaivSGtAsG--DwTLSCVRGqV~SiTFVF~DGtirTvp~ 327 (472)
T TIGR03752 278 LTANGIELP--------DVAGAVVSGTASG--DWTLSCVRGQVRSLTFVFNDGTIRTVPR 327 (472)
T ss_pred ccccCccCC--------CccceEEeeeecc--ceEEEEEeeeEEEEEEEEeCCeEEEecC
Confidence 345677665 355665 444444 1123445678999999999999999854
No 47
>CHL00165 ftrB ferredoxin thioreductase subunit beta; Validated
Probab=44.55 E-value=11 Score=31.40 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCcceeeccccCCC
Q 013982 404 VGDALEWQHREVEVNMSFSAPAFNYS 429 (432)
Q Consensus 404 l~e~i~~~~~~~~~~p~~~~p~~~~~ 429 (432)
....|+.|-+.-++|..++||||.|+
T Consensus 38 t~~Vi~GLa~nK~~yG~p~CPCR~~~ 63 (116)
T CHL00165 38 TAVVIEGLARHKDEYGAPLCPCRHYE 63 (116)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCCC
Confidence 34556777777789999999999985
No 48
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=43.90 E-value=9.4 Score=29.42 Aligned_cols=14 Identities=7% Similarity=-0.057 Sum_probs=9.7
Q ss_pred HhcCCcceeecccc
Q 013982 413 REVEVNMSFSAPAF 426 (432)
Q Consensus 413 ~~~~~~p~~~~p~~ 426 (432)
+++-|-|+|+||+.
T Consensus 51 k~alkTpvwl~pi~ 64 (92)
T PF02228_consen 51 KLALKTPVWLNPIN 64 (92)
T ss_dssp HHHHT-TTSTTTT-
T ss_pred HHHHcCCeeecccc
Confidence 35567899999974
No 49
>PHA02793 hypothetical protein; Provisional
Probab=33.26 E-value=17 Score=26.08 Aligned_cols=14 Identities=21% Similarity=-0.116 Sum_probs=10.2
Q ss_pred CcceeeccccCCCCC
Q 013982 417 VNMSFSAPAFNYSFS 431 (432)
Q Consensus 417 ~~p~~~~p~~~~~~~ 431 (432)
+||+ +||+|.|+-|
T Consensus 28 E~Pv-vc~~R~Y~~~ 41 (66)
T PHA02793 28 EYPV-VCNFRRYSES 41 (66)
T ss_pred eccc-ccccccchhc
Confidence 5776 7899888643
No 50
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=30.98 E-value=29 Score=33.31 Aligned_cols=31 Identities=10% Similarity=-0.039 Sum_probs=26.8
Q ss_pred EeecccccHHHHHHHHHHhcCCcceeecccc
Q 013982 396 DMLVPLYKVGDALEWQHREVEVNMSFSAPAF 426 (432)
Q Consensus 396 Dv~vP~~~l~e~i~~~~~~~~~~p~~~~p~~ 426 (432)
-++||+++.+++|++++++.++.|-=+|+..
T Consensus 66 EyaVP~e~~~~aL~elr~l~~~~~~~l~~~e 96 (257)
T PLN00107 66 AISVPLSGAAAFINDIKALRDIEPDALCGLE 96 (257)
T ss_pred EEEecHHHHHHHHHHHHHHHHhCcccccccc
Confidence 6899999999999999999998876666544
No 51
>PF02943 FeThRed_B: Ferredoxin thioredoxin reductase catalytic beta chain; InterPro: IPR004209 Ferredoxin thioredoxin reductase is a [4FE-4S] protein present in organisms performing oxygenic photosynthesis, and plays an important role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin), regulating enzymes by reduction of specific disulphide groups. It catalyses the light-dependent activation of several photosynthetis enzymes. Ferredoxin thioredoxin reductase is a heterodimer of subunit alpha and subunit beta. Subunit alpha is the variable subunit, and beta is the catalytic chain []. The structure of the beta subunit has been determined and found to fold around the FeS cluster [].; GO: 0008937 ferredoxin-NAD(P) reductase activity, 0055114 oxidation-reduction process; PDB: 2PUK_E 2PVD_A 2PVG_A 2PUO_A 2PU9_A 1DJ7_A 2PVO_A.
Probab=25.20 E-value=33 Score=28.44 Aligned_cols=25 Identities=28% Similarity=0.022 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCcceeeccccCCC
Q 013982 405 GDALEWQHREVEVNMSFSAPAFNYS 429 (432)
Q Consensus 405 ~e~i~~~~~~~~~~p~~~~p~~~~~ 429 (432)
...++.|.+.-++|.-++||+|+++
T Consensus 29 ~~v~~GL~~nk~~yG~~~CPCr~~~ 53 (108)
T PF02943_consen 29 DDVLEGLARNKERYGYPYCPCRLAS 53 (108)
T ss_dssp HHHHHHHHHHHHHHSS-B-SSC--S
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 4556667777778999999999875
No 52
>PTZ00378 hypothetical protein; Provisional
Probab=20.18 E-value=1.9e+02 Score=30.79 Aligned_cols=71 Identities=10% Similarity=-0.014 Sum_probs=47.4
Q ss_pred CCCCCCccchhhHHHHHhhccceEEEEEEccCCccchhh-h-hc----cccccccccccCCCCCCHHHHHHHHHHHHHhC
Q 013982 4 LEAPLRPKRKKGIADFLVQFRWILVVFVVLPISVTIYFL-I-YL----GDVKSDMKSYKKRQKEHDENVKKVVKRLKERN 77 (432)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~-~~----~~~w~~~~~~~~~~p~~~~~v~~iv~~~~~~~ 77 (432)
+||||.+++|.|...|..+---- +.+-++..|-.. . ++ ...|....=.+|-+..+..+.-++++++++++
T Consensus 349 IEDp~~E~D~~gw~~lt~~lG~~----iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQIGTlSEtieav~lA~~~g 424 (518)
T PTZ00378 349 VEDTHCDEDTFGLQRLQAALGDS----IVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCAIGTLSDVVEIVRAVGEDE 424 (518)
T ss_pred EecCCCchHHHHHHHHHHHhCCe----EEEECCCcCcCCCHHHHHHHHhcCCCceEEEccccceeHHHHHHHHHHHHHcC
Confidence 79999999999999999885211 444455555441 1 11 11143333345678889999999999998877
Q ss_pred C
Q 013982 78 P 78 (432)
Q Consensus 78 ~ 78 (432)
.
T Consensus 425 ~ 425 (518)
T PTZ00378 425 G 425 (518)
T ss_pred C
Confidence 4
Done!