Query 013983
Match_columns 432
No_of_seqs 219 out of 1471
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 00:42:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01453 B_lectin: D-mannose b 100.0 1E-31 2.2E-36 227.7 3.4 111 14-128 1-114 (114)
2 PF00954 S_locus_glycop: S-loc 100.0 3.5E-29 7.7E-34 211.0 11.5 109 154-263 1-110 (110)
3 cd00028 B_lectin Bulb-type man 99.8 1E-19 2.2E-24 154.8 9.8 84 6-96 33-116 (116)
4 smart00108 B_lectin Bulb-type 99.8 2.2E-18 4.8E-23 146.1 9.6 83 6-95 32-114 (114)
5 PF08276 PAN_2: PAN-like domai 99.7 1.2E-17 2.5E-22 127.6 5.9 66 281-347 1-66 (66)
6 cd01098 PAN_AP_plant Plant PAN 99.5 1.4E-14 3.1E-19 115.3 8.1 80 278-362 2-84 (84)
7 cd00129 PAN_APPLE PAN/APPLE-li 99.5 1.9E-14 4.1E-19 113.7 6.0 72 281-361 5-80 (80)
8 smart00108 B_lectin Bulb-type 98.7 7.6E-08 1.6E-12 81.4 9.0 87 34-157 24-112 (114)
9 smart00473 PAN_AP divergent su 98.7 1E-07 2.2E-12 74.1 7.7 72 285-360 4-77 (78)
10 cd00028 B_lectin Bulb-type man 98.6 1.9E-07 4.1E-12 79.2 8.9 89 34-158 24-114 (116)
11 PF01453 B_lectin: D-mannose b 97.5 0.00069 1.5E-08 57.3 9.5 74 15-97 38-114 (114)
12 cd01100 APPLE_Factor_XI_like S 97.3 0.00034 7.5E-09 54.1 4.3 50 289-342 8-57 (73)
13 PF08693 SKG6: Transmembrane a 95.3 0.032 7E-07 37.7 4.1 29 374-402 11-39 (40)
14 PF00024 PAN_1: PAN domain Thi 92.6 0.21 4.6E-06 38.2 4.5 54 286-343 3-57 (79)
15 PF04478 Mid2: Mid2 like cell 90.8 0.39 8.5E-06 42.3 4.6 14 375-388 51-64 (154)
16 smart00223 APPLE APPLE domain. 89.4 0.61 1.3E-05 36.7 4.3 51 290-341 6-56 (79)
17 PF08277 PAN_3: PAN-like domai 87.6 2 4.4E-05 32.4 6.1 40 305-349 18-58 (71)
18 smart00605 CW CW domain. 87.1 2.9 6.3E-05 33.7 7.1 56 305-364 20-77 (94)
19 PF14295 PAN_4: PAN domain; PD 86.3 0.72 1.6E-05 32.2 2.7 25 305-329 14-38 (51)
20 PF07645 EGF_CA: Calcium-bindi 85.4 0.33 7E-06 33.2 0.5 32 231-262 3-36 (42)
21 PF15102 TMEM154: TMEM154 prot 84.2 1.2 2.5E-05 39.1 3.5 13 391-403 75-87 (146)
22 cd00053 EGF Epidermal growth f 83.3 0.89 1.9E-05 28.7 1.9 29 233-261 2-31 (36)
23 smart00179 EGF_CA Calcium-bind 78.6 1.6 3.6E-05 28.3 2.0 30 231-260 3-33 (39)
24 PF01034 Syndecan: Syndecan do 76.3 0.82 1.8E-05 34.2 -0.0 13 391-403 27-39 (64)
25 PRK11138 outer membrane biogen 76.2 93 0.002 31.6 15.2 75 14-91 139-230 (394)
26 PF01683 EB: EB module; Inter 75.9 2.4 5.2E-05 30.1 2.3 34 227-263 16-49 (52)
27 PF01102 Glycophorin_A: Glycop 75.5 0.52 1.1E-05 40.2 -1.4 14 390-403 81-94 (122)
28 cd01099 PAN_AP_HGF Subfamily o 74.4 12 0.00026 29.2 6.2 35 306-343 24-60 (80)
29 PF09064 Tme5_EGF_like: Thromb 73.8 1.9 4.2E-05 28.0 1.2 18 244-261 11-28 (34)
30 PTZ00382 Variant-specific surf 72.5 6.9 0.00015 32.0 4.5 8 255-262 9-16 (96)
31 cd00054 EGF_CA Calcium-binding 72.3 3 6.6E-05 26.6 2.0 31 231-261 3-34 (38)
32 PF05454 DAG1: Dystroglycan (D 71.4 1.3 2.8E-05 43.5 0.0 10 394-403 166-175 (290)
33 PF01299 Lamp: Lysosome-associ 70.3 2.1 4.6E-05 42.5 1.2 23 381-403 278-300 (306)
34 PF12661 hEGF: Human growth fa 70.1 1.1 2.4E-05 22.8 -0.4 10 252-261 1-10 (13)
35 PF07974 EGF_2: EGF-like domai 67.0 4.5 9.9E-05 26.0 1.8 24 237-261 6-29 (32)
36 PF12947 EGF_3: EGF domain; I 63.4 1.9 4.1E-05 28.5 -0.5 25 236-260 5-30 (36)
37 PF12662 cEGF: Complement Clr- 62.6 4.3 9.3E-05 24.4 1.0 12 252-263 3-14 (24)
38 cd05845 Ig2_L1-CAM_like Second 61.5 14 0.0003 30.1 4.2 34 11-45 30-63 (95)
39 PF12273 RCR: Chitin synthesis 59.0 3.2 6.8E-05 35.8 0.0 10 395-404 17-26 (130)
40 PF02009 Rifin_STEVOR: Rifin/s 58.0 1.5 3.3E-05 43.3 -2.4 6 398-403 281-286 (299)
41 TIGR01477 RIFIN variant surfac 55.9 1.6 3.5E-05 43.8 -2.6 8 250-257 126-133 (353)
42 KOG4649 PQQ (pyrrolo-quinoline 55.5 22 0.00049 34.5 5.1 50 10-59 164-218 (354)
43 smart00181 EGF Epidermal growt 55.1 9.6 0.00021 24.1 1.9 24 237-261 6-30 (35)
44 PTZ00046 rifin; Provisional 54.3 1.8 3.9E-05 43.6 -2.5 8 250-257 123-130 (358)
45 TIGR01478 STEVOR variant surfa 53.2 3.1 6.8E-05 40.4 -1.0 14 390-403 275-288 (295)
46 PRK11138 outer membrane biogen 52.6 37 0.0008 34.6 6.7 79 12-95 41-148 (394)
47 PF01436 NHL: NHL repeat; Int 52.5 23 0.0005 21.6 3.2 20 34-53 7-26 (28)
48 PF00008 EGF: EGF-like domain 51.6 4.5 9.9E-05 25.8 -0.1 23 238-260 5-29 (32)
49 PTZ00370 STEVOR; Provisional 51.1 3.6 7.7E-05 40.1 -1.0 24 268-292 167-190 (296)
50 PF01708 Gemini_mov: Geminivir 47.2 42 0.00091 27.0 4.6 18 397-414 65-82 (91)
51 PF14610 DUF4448: Protein of u 45.1 24 0.00051 32.4 3.5 10 392-401 175-184 (189)
52 TIGR03300 assembly_YfgL outer 44.5 1.1E+02 0.0024 30.7 8.6 73 15-91 40-130 (377)
53 PF08374 Protocadherin: Protoc 43.8 12 0.00026 35.0 1.3 10 379-388 43-52 (221)
54 PF06365 CD34_antigen: CD34/Po 43.7 16 0.00035 34.0 2.1 19 318-340 36-54 (202)
55 PF14575 EphA2_TM: Ephrin type 43.1 3.8 8.2E-05 31.9 -1.8 9 393-401 19-27 (75)
56 PF12191 stn_TNFRSF12A: Tumour 42.4 6.3 0.00014 33.6 -0.7 12 391-402 94-105 (129)
57 PF06024 DUF912: Nucleopolyhed 42.3 12 0.00026 30.8 0.9 9 395-403 84-92 (101)
58 PF14991 MLANA: Protein melan- 42.2 7 0.00015 32.7 -0.5 12 390-401 39-50 (118)
59 TIGR03300 assembly_YfgL outer 41.6 3.7E+02 0.008 26.8 17.3 20 37-56 152-172 (377)
60 PHA03265 envelope glycoprotein 41.3 11 0.00023 37.8 0.6 8 395-402 369-376 (402)
61 PTZ00208 65 kDa invariant surf 41.1 6 0.00013 40.3 -1.2 10 394-403 406-415 (436)
62 PF13360 PQQ_2: PQQ-like domai 40.5 1.6E+02 0.0034 26.9 8.5 24 33-56 39-63 (238)
63 PF13360 PQQ_2: PQQ-like domai 39.6 63 0.0014 29.6 5.6 50 39-92 2-62 (238)
64 PF13908 Shisa: Wnt and FGF in 39.5 27 0.00058 31.7 2.9 12 215-226 8-19 (179)
65 TIGR01167 LPXTG_anchor LPXTG-m 39.0 24 0.00052 22.4 1.8 8 395-402 26-33 (34)
66 PF15345 TMEM51: Transmembrane 37.3 21 0.00046 33.7 1.8 25 379-403 62-86 (233)
67 PF02480 Herpes_gE: Alphaherpe 33.0 14 0.00031 38.6 0.0 29 268-296 236-265 (439)
68 PF07354 Sp38: Zona-pellucida- 32.7 60 0.0013 31.4 4.1 34 12-46 10-43 (271)
69 KOG1226 Integrin beta subunit 32.6 1.7E+02 0.0037 32.6 7.9 41 239-282 557-597 (783)
70 PF12877 DUF3827: Domain of un 30.6 33 0.00072 37.2 2.2 8 70-77 50-57 (684)
71 KOG1214 Nidogen and related ba 29.9 40 0.00086 37.7 2.6 30 231-261 828-858 (1289)
72 PF15102 TMEM154: TMEM154 prot 29.5 50 0.0011 29.1 2.7 17 390-406 71-87 (146)
73 PF12768 Rax2: Cortical protei 28.8 30 0.00065 34.0 1.5 17 381-397 235-251 (281)
74 PF05337 CSF-1: Macrophage col 28.3 19 0.00042 34.9 0.0 17 95-111 10-27 (285)
75 PF11770 GAPT: GRB2-binding ad 28.3 34 0.00074 30.1 1.5 12 384-395 16-27 (158)
76 PF14870 PSII_BNR: Photosynthe 27.9 6.1E+02 0.013 25.1 13.2 35 67-106 150-184 (302)
77 KOG1219 Uncharacterized conser 27.2 69 0.0015 40.2 4.1 27 237-263 3870-3898(4289)
78 TIGR03503 conserved hypothetic 27.0 22 0.00047 36.3 0.1 13 390-402 361-373 (374)
79 cd00216 PQQ_DH Dehydrogenases 26.6 1.9E+02 0.004 30.6 7.1 77 11-91 35-135 (488)
80 TIGR03066 Gem_osc_para_1 Gemma 24.5 4E+02 0.0087 22.4 7.2 53 30-82 34-102 (111)
81 PF15330 SIT: SHP2-interacting 24.3 18 0.00039 30.2 -0.9 8 395-402 19-26 (107)
82 PF14670 FXa_inhibition: Coagu 24.0 20 0.00043 23.7 -0.6 15 249-263 17-31 (36)
83 PF00954 S_locus_glycop: S-loc 24.0 3.4E+02 0.0074 22.1 6.8 50 187-242 46-95 (110)
84 KOG0640 mRNA cleavage stimulat 22.3 2.8E+02 0.006 27.8 6.6 72 18-91 251-333 (430)
85 smart00564 PQQ beta-propeller 21.9 1.4E+02 0.0031 18.1 3.2 16 39-54 15-31 (33)
86 PLN03150 hypothetical protein; 21.5 88 0.0019 34.3 3.5 12 392-403 562-573 (623)
87 PHA03099 epidermal growth fact 20.9 55 0.0012 28.1 1.4 11 395-405 122-132 (139)
88 PHA02887 EGF-like protein; Pro 20.3 1.1E+02 0.0024 25.9 3.0 30 230-260 83-117 (126)
No 1
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.97 E-value=1e-31 Score=227.66 Aligned_cols=111 Identities=49% Similarity=0.757 Sum_probs=80.8
Q ss_pred CCcEEEEcCCCCCCCCC--cceEEEecCCcEEEEcCCCcEEEec-CCCCCcCCceEEEEecCCCEEEEeccCCCCCceEE
Q 013983 14 PHEVVWVANRLNPINDS--FGFLMINKTGNLVLTSQSNIVVWSA-YLSKEVQTPVVLQLLDSGNLVLRDEHDGDSETYFW 90 (432)
Q Consensus 14 ~~tvVW~ANr~~Pv~~~--~~~L~l~~dG~LvL~~~~g~~vWst-~~s~~~~~~~~a~LldsGNLVL~d~~~~~~~~~lW 90 (432)
++||||+|||++|+... ..+|.|+.||+|+|.+..++.+|++ ++.+....+..|+|+|+|||||+|.. +.+||
T Consensus 1 ~~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~----~~~lW 76 (114)
T PF01453_consen 1 PRTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSS----GNVLW 76 (114)
T ss_dssp ---------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEETT----SEEEE
T ss_pred CcccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEeec----ceEEE
Confidence 47999999999999543 3789999999999999998999999 55543324679999999999999964 48999
Q ss_pred eeecCCCCCCCCCceeeccccCCceeEEEecCCCCCCC
Q 013983 91 QSFDYPSDTLLPGMKLGWDLKTGLERRVTSWKSFDDPS 128 (432)
Q Consensus 91 QSFd~PTDTLLPGq~L~~~~~tG~~~~L~Sw~s~~dps 128 (432)
|||||||||+||||+|+.+..+|.+..|+||++.+|||
T Consensus 77 ~Sf~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 77 QSFDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp ESTTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred eecCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 99999999999999999988887777899999999996
No 2
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.96 E-value=3.5e-29 Score=211.02 Aligned_cols=109 Identities=50% Similarity=1.149 Sum_probs=103.9
Q ss_pred EEeCCCCCceee-ecCCCCCCceEEEEEEcCCeEEEEEEecCCCcEEEEEEccccceEEEEEEecCCCCeEEEeecCCCC
Q 013983 154 YRTGPWNGLRFS-APSLRPNPIFSFSFVSNDVELYYTFNITNKAVISRIVMNQTLYVRRRFIWNKATQSWELYSDVPRDQ 232 (432)
Q Consensus 154 w~sg~w~g~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~rl~Ld~dG~l~r~y~w~~~~~~W~~~~~~p~~~ 232 (432)
||+|+|||..|+ +|+|.....+.+.|+.+++|++++|.+.+.+.++|++||++|++ ++|.|++..++|.++|++|.++
T Consensus 1 wrsG~WnG~~f~g~p~~~~~~~~~~~fv~~~~e~~~t~~~~~~s~~~r~~ld~~G~l-~~~~w~~~~~~W~~~~~~p~d~ 79 (110)
T PF00954_consen 1 WRSGPWNGQRFSGIPEMSSNSLYNYSFVSNNEEVYYTYSLSNSSVLSRLVLDSDGQL-QRYIWNESTQSWSVFWSAPKDQ 79 (110)
T ss_pred CCccccCCeEECCcccccccceeEEEEEECCCeEEEEEecCCCceEEEEEEeeeeEE-EEEEEecCCCcEEEEEEecccC
Confidence 899999999999 99998778899999999999999999988899999999999999 9999999999999999999999
Q ss_pred CcccccCCCCcccccCCCCcccCCCCCccCC
Q 013983 233 CDTYGLCGAYGICIIGQSPVCQCLKGFKPKS 263 (432)
Q Consensus 233 C~~~~~CG~~giC~~~~~~~C~C~~GF~~~~ 263 (432)
||+|+.||+||+|+.+..|.|+||+||+|++
T Consensus 80 Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~P~n 110 (110)
T PF00954_consen 80 CDVYGFCGPNGICNSNNSPKCSCLPGFEPKN 110 (110)
T ss_pred CCCccccCCccEeCCCCCCceECCCCcCCCc
Confidence 9999999999999988889999999999974
No 3
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.81 E-value=1e-19 Score=154.76 Aligned_cols=84 Identities=48% Similarity=0.721 Sum_probs=71.8
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCCCcceEEEecCCcEEEEcCCCcEEEecCCCCCcCCceEEEEecCCCEEEEeccCCCC
Q 013983 6 KEPNKSYPPHEVVWVANRLNPINDSFGFLMINKTGNLVLTSQSNIVVWSAYLSKEVQTPVVLQLLDSGNLVLRDEHDGDS 85 (432)
Q Consensus 6 ~~~~~~i~~~tvVW~ANr~~Pv~~~~~~L~l~~dG~LvL~~~~g~~vWst~~s~~~~~~~~a~LldsGNLVL~d~~~~~~ 85 (432)
..+|++.+ .++||.||++.|. ...+.|.|++||+|+|.|.+|.++|+|++.+ ......|+|+|+|||||++.+
T Consensus 33 lv~~~~~~-~~~vW~snt~~~~-~~~~~l~l~~dGnLvl~~~~g~~vW~S~~~~-~~~~~~~~L~ddGnlvl~~~~---- 105 (116)
T cd00028 33 LILYKGSS-RTVVWVANRDNPS-GSSCTLTLQSDGNLVIYDGSGTVVWSSNTTR-VNGNYVLVLLDDGNLVLYDSD---- 105 (116)
T ss_pred EEEEeCCC-CeEEEECCCCCCC-CCCEEEEEecCCCeEEEcCCCcEEEEecccC-CCCceEEEEeCCCCEEEECCC----
Confidence 45677776 7899999999984 4557899999999999999899999999865 234568999999999999975
Q ss_pred CceEEeeecCC
Q 013983 86 ETYFWQSFDYP 96 (432)
Q Consensus 86 ~~~lWQSFd~P 96 (432)
+.+||||||||
T Consensus 106 ~~~~W~Sf~~P 116 (116)
T cd00028 106 GNFLWQSFDYP 116 (116)
T ss_pred CCEEEcCCCCC
Confidence 47999999999
No 4
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.76 E-value=2.2e-18 Score=146.06 Aligned_cols=83 Identities=47% Similarity=0.717 Sum_probs=70.2
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCCCcceEEEecCCcEEEEcCCCcEEEecCCCCCcCCceEEEEecCCCEEEEeccCCCC
Q 013983 6 KEPNKSYPPHEVVWVANRLNPINDSFGFLMINKTGNLVLTSQSNIVVWSAYLSKEVQTPVVLQLLDSGNLVLRDEHDGDS 85 (432)
Q Consensus 6 ~~~~~~i~~~tvVW~ANr~~Pv~~~~~~L~l~~dG~LvL~~~~g~~vWst~~s~~~~~~~~a~LldsGNLVL~d~~~~~~ 85 (432)
..+|++.+ .++||+||++.|+..+ +.|.|++||+|+|.+.+|.++|+|++.. ......++|+|+|||||++..
T Consensus 32 lV~~~~~~-~~~vW~snt~~~~~~~-~~l~l~~dGnLvl~~~~g~~vW~S~t~~-~~~~~~~~L~ddGnlvl~~~~---- 104 (114)
T smart00108 32 LILYKSSS-RTVVWVANRDNPVSDS-CTLTLQSDGNLVLYDGDGRVVWSSNTTG-ANGNYVLVLLDDGNLVIYDSD---- 104 (114)
T ss_pred EEEEECCC-CcEEEECCCCCCCCCC-EEEEEeCCCCEEEEeCCCCEEEEecccC-CCCceEEEEeCCCCEEEECCC----
Confidence 35677766 7899999999998654 7899999999999999899999999862 234568999999999999875
Q ss_pred CceEEeeecC
Q 013983 86 ETYFWQSFDY 95 (432)
Q Consensus 86 ~~~lWQSFd~ 95 (432)
+.++||||||
T Consensus 105 ~~~~W~Sf~~ 114 (114)
T smart00108 105 GNFLWQSFDY 114 (114)
T ss_pred CCEEeCCCCC
Confidence 3799999997
No 5
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=99.71 E-value=1.2e-17 Score=127.60 Aligned_cols=66 Identities=44% Similarity=1.024 Sum_probs=56.9
Q ss_pred CCCCCCeEEEeeecCCCCCccceecCCCHHHHHHHHhccCCeEeEEeccccCCCcceeeecccccee
Q 013983 281 YSRQDGFIKFTELKLPDATSSWVSKSMNLKECREGCLENSSCMAYTNSDIRGGGSGCAMWFGELIDM 347 (432)
Q Consensus 281 C~~~d~F~~l~~v~~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~y~~~~~~g~gC~~w~~~L~~~ 347 (432)
|+.+|+|+++++|++|+++......+.++++|++.||+||||+||+|.+.. ++++|++|+++|+|+
T Consensus 1 C~~~d~F~~l~~~~~p~~~~~~~~~~~s~~~C~~~Cl~nCsC~Ayay~~~~-~~~~C~lW~~~L~d~ 66 (66)
T PF08276_consen 1 CGSGDGFLKLPNMKLPDFDNAIVDSSVSLEECEKACLSNCSCTAYAYSNLS-GGGGCLLWYGDLVDL 66 (66)
T ss_pred CcCCCEEEEECCeeCCCCcceeeecCCCHHHHHhhcCCCCCEeeEEeeccC-CCCEEEEEcCEeecC
Confidence 444799999999999998766555668999999999999999999998654 567899999999875
No 6
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=99.55 E-value=1.4e-14 Score=115.31 Aligned_cols=80 Identities=44% Similarity=0.982 Sum_probs=64.9
Q ss_pred CCCCCCC---CCeEEEeeecCCCCCccceecCCCHHHHHHHHhccCCeEeEEeccccCCCcceeeeccccceeEEcCCCC
Q 013983 278 PLNYSRQ---DGFIKFTELKLPDATSSWVSKSMNLKECREGCLENSSCMAYTNSDIRGGGSGCAMWFGELIDMRDFPGGG 354 (432)
Q Consensus 278 ~l~C~~~---d~F~~l~~v~~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~y~~~~~~g~gC~~w~~~L~~~~~~~~~~ 354 (432)
+++|... +.|++++++++|+..... ...++++|++.||+||+|+||+|.+ ++++|++|...+.+.+.....+
T Consensus 2 ~~~C~~~~~~~~f~~~~~~~~~~~~~~~--~~~s~~~C~~~Cl~nCsC~a~~~~~---~~~~C~~~~~~~~~~~~~~~~~ 76 (84)
T cd01098 2 PLNCGGDGSTDGFLKLPDVKLPDNASAI--TAISLEECREACLSNCSCTAYAYNN---GSGGCLLWNGLLNNLRSLSSGG 76 (84)
T ss_pred CcccCCCCCCCEEEEeCCeeCCCchhhh--ccCCHHHHHHHHhcCCCcceeeecC---CCCeEEEEeceecceEeecCCC
Confidence 4567543 689999999999875442 5678999999999999999999974 3567999999998887655456
Q ss_pred ceEEEEEe
Q 013983 355 QDFYIRMS 362 (432)
Q Consensus 355 ~~~yikv~ 362 (432)
.++||||+
T Consensus 77 ~~~yiKv~ 84 (84)
T cd01098 77 GTLYLRLA 84 (84)
T ss_pred cEEEEEeC
Confidence 78999985
No 7
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=99.51 E-value=1.9e-14 Score=113.71 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=61.0
Q ss_pred CCCCCCeEEEeeecCCCCCccceecCCCHHHHHHHHhc---cCCeEeEEeccccCCCcceeeecccc-ceeEEcCCCCce
Q 013983 281 YSRQDGFIKFTELKLPDATSSWVSKSMNLKECREGCLE---NSSCMAYTNSDIRGGGSGCAMWFGEL-IDMRDFPGGGQD 356 (432)
Q Consensus 281 C~~~d~F~~l~~v~~p~~~~~~~~~~~~~~~C~~~Cl~---nCsC~a~~y~~~~~~g~gC~~w~~~L-~~~~~~~~~~~~ 356 (432)
|..+.+|+++.++++|++.. .+++||++.|++ ||||+||+|.+. +.||++|.++| .+++++..+|.+
T Consensus 5 ~~~~g~fl~~~~~klpd~~~------~s~~eC~~~Cl~~~~nCsC~Aya~~~~---~~gC~~W~~~l~~d~~~~~~~g~~ 75 (80)
T cd00129 5 CKSAGTTLIKIALKIKTTKA------NTADECANRCEKNGLPFSCKAFVFAKA---RKQCLWFPFNSMSGVRKEFSHGFD 75 (80)
T ss_pred eecCCeEEEeecccCCcccc------cCHHHHHHHHhcCCCCCCceeeeccCC---CCCeEEecCcchhhHHhccCCCce
Confidence 33457899999999998643 589999999999 999999999742 46899999999 999887777899
Q ss_pred EEEEE
Q 013983 357 FYIRM 361 (432)
Q Consensus 357 ~yikv 361 (432)
+|||.
T Consensus 76 Ly~r~ 80 (80)
T cd00129 76 LYENK 80 (80)
T ss_pred eEeEC
Confidence 99983
No 8
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=98.70 E-value=7.6e-08 Score=81.42 Aligned_cols=87 Identities=26% Similarity=0.443 Sum_probs=62.1
Q ss_pred EEEecCCcEEEEcCC-CcEEEecCCCCCcCCceEEEEecCCCEEEEeccCCCCCceEEeeecCCCCCCCCCceeeccccC
Q 013983 34 LMINKTGNLVLTSQS-NIVVWSAYLSKEVQTPVVLQLLDSGNLVLRDEHDGDSETYFWQSFDYPSDTLLPGMKLGWDLKT 112 (432)
Q Consensus 34 L~l~~dG~LvL~~~~-g~~vWst~~s~~~~~~~~a~LldsGNLVL~d~~~~~~~~~lWQSFd~PTDTLLPGq~L~~~~~t 112 (432)
+.+..||+||+.+.. +.++|++++..+......+.|.++|||||++.+ +.++|+|= |
T Consensus 24 ~~~q~dgnlV~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~----g~~vW~S~-----t------------- 81 (114)
T smart00108 24 LIMQNDYNLILYKSSSRTVVWVANRDNPVSDSCTLTLQSDGNLVLYDGD----GRVVWSSN-----T------------- 81 (114)
T ss_pred cCCCCCEEEEEEECCCCcEEEECCCCCCCCCCEEEEEeCCCCEEEEeCC----CCEEEEec-----c-------------
Confidence 445678999998764 579999998654333367899999999999875 36899871 0
Q ss_pred CceeEEEecCCCCCCCCcceEEEeccCCCceEEEEc-CCeeeEEeC
Q 013983 113 GLERRVTSWKSFDDPSPGDFIWAIERQDNPEVVMWK-GSRKFYRTG 157 (432)
Q Consensus 113 G~~~~L~Sw~s~~dps~G~fsl~l~~~g~~~~~~~~-~~~~yw~sg 157 (432)
....|.+.+.|+++|..++ ++ ..++.|.+.
T Consensus 82 -------------~~~~~~~~~~L~ddGnlvl--~~~~~~~~W~Sf 112 (114)
T smart00108 82 -------------TGANGNYVLVLLDDGNLVI--YDSDGNFLWQSF 112 (114)
T ss_pred -------------cCCCCceEEEEeCCCCEEE--ECCCCCEEeCCC
Confidence 0135678899999997544 43 245778763
No 9
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=98.65 E-value=1e-07 Score=74.09 Aligned_cols=72 Identities=38% Similarity=0.780 Sum_probs=55.8
Q ss_pred CCeEEEeeecCCCCCccceecCCCHHHHHHHHhc-cCCeEeEEeccccCCCcceeeec-cccceeEEcCCCCceEEEE
Q 013983 285 DGFIKFTELKLPDATSSWVSKSMNLKECREGCLE-NSSCMAYTNSDIRGGGSGCAMWF-GELIDMRDFPGGGQDFYIR 360 (432)
Q Consensus 285 d~F~~l~~v~~p~~~~~~~~~~~~~~~C~~~Cl~-nCsC~a~~y~~~~~~g~gC~~w~-~~L~~~~~~~~~~~~~yik 360 (432)
..|..++++.+++..... ....++++|++.|++ +|+|.||.|.. ++.+|.+|. +.+.+.+.....+.++|.|
T Consensus 4 ~~f~~~~~~~l~~~~~~~-~~~~s~~~C~~~C~~~~~~C~s~~y~~---~~~~C~l~~~~~~~~~~~~~~~~~~~y~~ 77 (78)
T smart00473 4 DCFVRLPNTKLPGFSRIV-ISVASLEECASKCLNSNCSCRSFTYNN---GTKGCLLWSESSLGDARLFPSGGVDLYEK 77 (78)
T ss_pred ceeEEecCccCCCCccee-EcCCCHHHHHHHhCCCCCceEEEEEcC---CCCEEEEeeCCccccceecccCCceeEEe
Confidence 568999999998654432 346789999999999 99999999974 346799999 7777776444556677776
No 10
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=98.61 E-value=1.9e-07 Score=79.24 Aligned_cols=89 Identities=24% Similarity=0.356 Sum_probs=62.7
Q ss_pred EEEec-CCcEEEEcCC-CcEEEecCCCCCcCCceEEEEecCCCEEEEeccCCCCCceEEeeecCCCCCCCCCceeecccc
Q 013983 34 LMINK-TGNLVLTSQS-NIVVWSAYLSKEVQTPVVLQLLDSGNLVLRDEHDGDSETYFWQSFDYPSDTLLPGMKLGWDLK 111 (432)
Q Consensus 34 L~l~~-dG~LvL~~~~-g~~vWst~~s~~~~~~~~a~LldsGNLVL~d~~~~~~~~~lWQSFd~PTDTLLPGq~L~~~~~ 111 (432)
+.... ||+||+.+.. +.++|++|+..+......+.|.++|||||++.++ .++|+|=-
T Consensus 24 ~~~q~~dgnlv~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g----~~vW~S~~----------------- 82 (116)
T cd00028 24 LIMQSRDYNLILYKGSSRTVVWVANRDNPSGSSCTLTLQSDGNLVIYDGSG----TVVWSSNT----------------- 82 (116)
T ss_pred CCCCCCeEEEEEEeCCCCeEEEECCCCCCCCCCEEEEEecCCCeEEEcCCC----cEEEEecc-----------------
Confidence 44555 8999998754 5799999986532345578999999999998753 78998721
Q ss_pred CCceeEEEecCCCCCCCCcceEEEeccCCCceEEEEcCCeeeEEeCC
Q 013983 112 TGLERRVTSWKSFDDPSPGDFIWAIERQDNPEVVMWKGSRKFYRTGP 158 (432)
Q Consensus 112 tG~~~~L~Sw~s~~dps~G~fsl~l~~~g~~~~~~~~~~~~yw~sg~ 158 (432)
+ .+.+.+.+.|+++|...++-. ...+.|.+..
T Consensus 83 --------~------~~~~~~~~~L~ddGnlvl~~~-~~~~~W~Sf~ 114 (116)
T cd00028 83 --------T------RVNGNYVLVLLDDGNLVLYDS-DGNFLWQSFD 114 (116)
T ss_pred --------c------CCCCceEEEEeCCCCEEEECC-CCCEEEcCCC
Confidence 1 025678899999997544322 2456787754
No 11
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=97.53 E-value=0.00069 Score=57.28 Aligned_cols=74 Identities=30% Similarity=0.449 Sum_probs=48.9
Q ss_pred CcEEEEc-CCCCCCCCCcceEEEecCCcEEEEcCCCcEEEecCCCCCcCCceEEEEec--CCCEEEEeccCCCCCceEEe
Q 013983 15 HEVVWVA-NRLNPINDSFGFLMINKTGNLVLTSQSNIVVWSAYLSKEVQTPVVLQLLD--SGNLVLRDEHDGDSETYFWQ 91 (432)
Q Consensus 15 ~tvVW~A-Nr~~Pv~~~~~~L~l~~dG~LvL~~~~g~~vWst~~s~~~~~~~~a~Lld--sGNLVL~d~~~~~~~~~lWQ 91 (432)
.+++|.. +...+.. ....+.|.+||||||.|..+.++|++.... ..+.+.+++ .||++ .... ..+.|.
T Consensus 38 ~~~iWss~~t~~~~~-~~~~~~L~~~GNlvl~d~~~~~lW~Sf~~p---tdt~L~~q~l~~~~~~-~~~~----~~~sw~ 108 (114)
T PF01453_consen 38 GSVIWSSNNTSGRGN-SGCYLVLQDDGNLVLYDSSGNVLWQSFDYP---TDTLLPGQKLGDGNVT-GKND----SLTSWS 108 (114)
T ss_dssp TEEEEE--S-TTSS--SSEEEEEETTSEEEEEETTSEEEEESTTSS---S-EEEEEET--TSEEE-EEST----SSEEEE
T ss_pred CCEEEEecccCCccc-cCeEEEEeCCCCEEEEeecceEEEeecCCC---ccEEEeccCcccCCCc-cccc----eEEeEC
Confidence 5679999 4333322 347899999999999999899999995422 234666777 88888 5432 368998
Q ss_pred eecCCC
Q 013983 92 SFDYPS 97 (432)
Q Consensus 92 SFd~PT 97 (432)
|=+.|+
T Consensus 109 s~~dps 114 (114)
T PF01453_consen 109 SNTDPS 114 (114)
T ss_dssp SS----
T ss_pred CCCCCC
Confidence 877663
No 12
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=97.28 E-value=0.00034 Score=54.13 Aligned_cols=50 Identities=16% Similarity=0.379 Sum_probs=35.8
Q ss_pred EEeeecCCCCCccceecCCCHHHHHHHHhccCCeEeEEeccccCCCcceeeecc
Q 013983 289 KFTELKLPDATSSWVSKSMNLKECREGCLENSSCMAYTNSDIRGGGSGCAMWFG 342 (432)
Q Consensus 289 ~l~~v~~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~y~~~~~~g~gC~~w~~ 342 (432)
.++++.++..+.... ...+.++|++.|+.+|+|.||.|.. +...|+++..
T Consensus 8 ~~~~~~~~g~d~~~~-~~~s~~~Cq~~C~~~~~C~afT~~~---~~~~C~lk~~ 57 (73)
T cd01100 8 QGSNVDFRGGDLSTV-FASSAEQCQAACTADPGCLAFTYNT---KSKKCFLKSS 57 (73)
T ss_pred ccCCCccccCCccee-ecCCHHHHHHHcCCCCCceEEEEEC---CCCeEEcccC
Confidence 335666665444323 2458999999999999999999973 2356998654
No 13
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=95.32 E-value=0.032 Score=37.69 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=12.8
Q ss_pred eeEEEEehhHHHHHHHHHHhheeeeeeec
Q 013983 374 TKIVVIVISTAALLAVVLIAGYLIRKRRR 402 (432)
Q Consensus 374 ~~~~~~v~~~~~~~~~~~~~~~~~~~rrr 402 (432)
..|.+.|++-++++++++++++++|+||+
T Consensus 11 vaIa~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 11 VAIAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred EEEEEEEEechHHHHHHHHHHhheEEecc
Confidence 33433444444444433434444555554
No 14
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=92.61 E-value=0.21 Score=38.23 Aligned_cols=54 Identities=17% Similarity=0.431 Sum_probs=40.3
Q ss_pred CeEEEeeecCCCCCccceecCCCHHHHHHHHhccCC-eEeEEeccccCCCcceeeeccc
Q 013983 286 GFIKFTELKLPDATSSWVSKSMNLKECREGCLENSS-CMAYTNSDIRGGGSGCAMWFGE 343 (432)
Q Consensus 286 ~F~~l~~v~~p~~~~~~~~~~~~~~~C~~~Cl~nCs-C~a~~y~~~~~~g~gC~~w~~~ 343 (432)
.|..+++..+........ ...++++|.+.|+.+=. |.+|.|.. ....|.+....
T Consensus 3 ~f~~~~~~~l~~~~~~~~-~v~s~~~C~~~C~~~~~~C~s~~y~~---~~~~C~L~~~~ 57 (79)
T PF00024_consen 3 AFERIPGYRLSGHSIKEI-NVPSLEECAQLCLNEPRRCKSFNYDP---SSKTCYLSSSD 57 (79)
T ss_dssp TEEEEEEEEEESCEEEEE-EESSHHHHHHHHHHSTT-ESEEEEET---TTTEEEEECSS
T ss_pred CeEEECCEEEeCCcceEE-cCCCHHHHHhhcCcCcccCCeEEEEC---CCCEEEEcCCC
Confidence 378888888776433323 44589999999999999 99999974 23569986544
No 15
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=90.79 E-value=0.39 Score=42.31 Aligned_cols=14 Identities=29% Similarity=0.209 Sum_probs=5.8
Q ss_pred eEEEEehhHHHHHH
Q 013983 375 KIVVIVISTAALLA 388 (432)
Q Consensus 375 ~~~~~v~~~~~~~~ 388 (432)
.|.++|.+++++++
T Consensus 51 VIGvVVGVGg~ill 64 (154)
T PF04478_consen 51 VIGVVVGVGGPILL 64 (154)
T ss_pred EEEEEecccHHHHH
Confidence 33334444444443
No 16
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=89.41 E-value=0.61 Score=36.69 Aligned_cols=51 Identities=14% Similarity=0.296 Sum_probs=35.5
Q ss_pred EeeecCCCCCccceecCCCHHHHHHHHhccCCeEeEEeccccCCCcceeeec
Q 013983 290 FTELKLPDATSSWVSKSMNLKECREGCLENSSCMAYTNSDIRGGGSGCAMWF 341 (432)
Q Consensus 290 l~~v~~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~y~~~~~~g~gC~~w~ 341 (432)
+++++++..+.... ...+.++|++.|..+=.|.||.|...+.....|++..
T Consensus 6 ~~~~df~G~Dl~~~-~~~~~~~Cq~~Ct~~~~C~~FTf~~~~~~~~~C~LK~ 56 (79)
T smart00223 6 YKNVDFRGSDINTV-YVPSAQVCQKRCTSHPRCLFFTFSTNEPPEEKCLLKD 56 (79)
T ss_pred ccCccccCceeeee-ecCCHHHHHHhhcCCCCccEEEeeCCCCCCCEeEeCc
Confidence 34566665554433 3458999999999999999999975332222698854
No 17
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=87.61 E-value=2 Score=32.38 Aligned_cols=40 Identities=13% Similarity=0.493 Sum_probs=30.3
Q ss_pred cCCCHHHHHHHHhccCCeEeEEeccccCCCcceeeec-cccceeEE
Q 013983 305 KSMNLKECREGCLENSSCMAYTNSDIRGGGSGCAMWF-GELIDMRD 349 (432)
Q Consensus 305 ~~~~~~~C~~~Cl~nCsC~a~~y~~~~~~g~gC~~w~-~~L~~~~~ 349 (432)
...+.++|-+.|..+=.|.++.+. ...|.++. +.+..+++
T Consensus 18 ~~~sw~~Cv~~C~~~~~C~la~~~-----~~~C~~y~~~~i~~v~~ 58 (71)
T PF08277_consen 18 TNTSWDDCVQKCYNDENCVLAYFD-----SGKCYLYNYGSISTVQK 58 (71)
T ss_pred cCCCHHHHhHHhCCCCEEEEEEeC-----CCCEEEEEcCCEEEEEE
Confidence 456789999999999999999885 35798874 33444444
No 18
>smart00605 CW CW domain.
Probab=87.14 E-value=2.9 Score=33.70 Aligned_cols=56 Identities=18% Similarity=0.563 Sum_probs=39.6
Q ss_pred cCCCHHHHHHHHhccCCeEeEEeccccCCCcceeeec-cccceeEEcCC-CCceEEEEEecC
Q 013983 305 KSMNLKECREGCLENSSCMAYTNSDIRGGGSGCAMWF-GELIDMRDFPG-GGQDFYIRMSAS 364 (432)
Q Consensus 305 ~~~~~~~C~~~Cl~nCsC~a~~y~~~~~~g~gC~~w~-~~L~~~~~~~~-~~~~~yikv~~s 364 (432)
...+.++|.+.|..+..|..+.... ...|.++. +.+..+++... .+..+=+|+..+
T Consensus 20 ~~~sw~~Ci~~C~~~~~Cvlay~~~----~~~C~~f~~~~~~~v~~~~~~~~~~VAfK~~~~ 77 (94)
T smart00605 20 ATLSWDECIQKCYEDSNCVLAYGNS----SETCYLFSYGTVLTVKKLSSSSGKKVAFKVSTD 77 (94)
T ss_pred cCCCHHHHHHHHhCCCceEEEecCC----CCceEEEEcCCeEEEEEccCCCCcEEEEEEeCC
Confidence 3567899999999999999876641 25698765 34666666543 456677887643
No 19
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=86.31 E-value=0.72 Score=32.19 Aligned_cols=25 Identities=24% Similarity=0.635 Sum_probs=17.7
Q ss_pred cCCCHHHHHHHHhccCCeEeEEecc
Q 013983 305 KSMNLKECREGCLENSSCMAYTNSD 329 (432)
Q Consensus 305 ~~~~~~~C~~~Cl~nCsC~a~~y~~ 329 (432)
...+.++|.++|..+=.|.+|.|..
T Consensus 14 ~~~s~~~C~~~C~~~~~C~~~~~~~ 38 (51)
T PF14295_consen 14 TASSPEECQAACAADPGCQAFTFNP 38 (51)
T ss_dssp ----HHHHHHHHHTSTT--EEEEET
T ss_pred cCCCHHHHHHHccCCCCCCEEEEEC
Confidence 3458999999999999999999974
No 20
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=85.37 E-value=0.33 Score=33.16 Aligned_cols=32 Identities=28% Similarity=0.658 Sum_probs=25.1
Q ss_pred CCCccc-ccCCCCcccccC-CCCcccCCCCCccC
Q 013983 231 DQCDTY-GLCGAYGICIIG-QSPVCQCLKGFKPK 262 (432)
Q Consensus 231 ~~C~~~-~~CG~~giC~~~-~~~~C~C~~GF~~~ 262 (432)
|+|... ..|.+++.|... ++-.|.|++||+..
T Consensus 3 dEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~ 36 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNTEGSYSCSCPPGYELN 36 (42)
T ss_dssp STTTTTSSSSSTTSEEEEETTEEEEEESTTEEEC
T ss_pred cccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEEC
Confidence 678775 479999999764 45689999999843
No 21
>PF15102 TMEM154: TMEM154 protein family
Probab=84.22 E-value=1.2 Score=39.09 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=5.3
Q ss_pred HHhheeeeeeecc
Q 013983 391 LIAGYLIRKRRRN 403 (432)
Q Consensus 391 ~~~~~~~~~rrr~ 403 (432)
+++++.++||||.
T Consensus 75 vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 75 VVCLVIYYKRKRT 87 (146)
T ss_pred HHHheeEEeeccc
Confidence 3333334444443
No 22
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=83.33 E-value=0.89 Score=28.67 Aligned_cols=29 Identities=28% Similarity=0.658 Sum_probs=21.6
Q ss_pred CcccccCCCCcccccC-CCCcccCCCCCcc
Q 013983 233 CDTYGLCGAYGICIIG-QSPVCQCLKGFKP 261 (432)
Q Consensus 233 C~~~~~CG~~giC~~~-~~~~C~C~~GF~~ 261 (432)
|.....|..++.|... +...|.|++||..
T Consensus 2 C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 31 (36)
T cd00053 2 CAASNPCSNGGTCVNTPGSYRCVCPPGYTG 31 (36)
T ss_pred CCCCCCCCCCCEEecCCCCeEeECCCCCcc
Confidence 4435678888999765 3568999999964
No 23
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=78.62 E-value=1.6 Score=28.31 Aligned_cols=30 Identities=30% Similarity=0.726 Sum_probs=22.4
Q ss_pred CCCcccccCCCCcccccCC-CCcccCCCCCc
Q 013983 231 DQCDTYGLCGAYGICIIGQ-SPVCQCLKGFK 260 (432)
Q Consensus 231 ~~C~~~~~CG~~giC~~~~-~~~C~C~~GF~ 260 (432)
++|.....|...+.|.... ...|.|++||.
T Consensus 3 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred ccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 5676556788888997543 45799999996
No 24
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=76.34 E-value=0.82 Score=34.20 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=0.6
Q ss_pred HHhheeeeeeecc
Q 013983 391 LIAGYLIRKRRRN 403 (432)
Q Consensus 391 ~~~~~~~~~rrr~ 403 (432)
+++.++++|.||+
T Consensus 27 lLIlf~iyR~rkk 39 (64)
T PF01034_consen 27 LLILFLIYRMRKK 39 (64)
T ss_dssp ----------S--
T ss_pred HHHHHHHHHHHhc
Confidence 3344556665554
No 25
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=76.22 E-value=93 Score=31.58 Aligned_cols=75 Identities=19% Similarity=0.300 Sum_probs=40.6
Q ss_pred CCcEEEEcCCCCCCCCC----cceEE-EecCCcEEEEcC-CCcEEEecCCCCC------cCCce-----EEEEecCCCEE
Q 013983 14 PHEVVWVANRLNPINDS----FGFLM-INKTGNLVLTSQ-SNIVVWSAYLSKE------VQTPV-----VLQLLDSGNLV 76 (432)
Q Consensus 14 ~~tvVW~ANr~~Pv~~~----~~~L~-l~~dG~LvL~~~-~g~~vWst~~s~~------~~~~~-----~a~LldsGNLV 76 (432)
+-.++|..+...++..+ .+.+. -+.+|.|+-.|. +|.++|+.+...+ ...++ +..-..+|.++
T Consensus 139 tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~ 218 (394)
T PRK11138 139 DGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVS 218 (394)
T ss_pred CCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEE
Confidence 34568887665433211 23333 345677877775 6889999764211 01111 11223456666
Q ss_pred EEeccCCCCCceEEe
Q 013983 77 LRDEHDGDSETYFWQ 91 (432)
Q Consensus 77 L~d~~~~~~~~~lWQ 91 (432)
-.|..+ ++.+|+
T Consensus 219 a~d~~~---G~~~W~ 230 (394)
T PRK11138 219 AVLMEQ---GQLIWQ 230 (394)
T ss_pred EEEccC---Chhhhe
Confidence 666543 578897
No 26
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=75.87 E-value=2.4 Score=30.13 Aligned_cols=34 Identities=24% Similarity=0.606 Sum_probs=27.9
Q ss_pred ecCCCCCcccccCCCCcccccCCCCcccCCCCCccCC
Q 013983 227 DVPRDQCDTYGLCGAYGICIIGQSPVCQCLKGFKPKS 263 (432)
Q Consensus 227 ~~p~~~C~~~~~CG~~giC~~~~~~~C~C~~GF~~~~ 263 (432)
..|-+.|....-|-.++.|.. ..|.|++||.+..
T Consensus 16 ~~~g~~C~~~~qC~~~s~C~~---g~C~C~~g~~~~~ 49 (52)
T PF01683_consen 16 VQPGESCESDEQCIGGSVCVN---GRCQCPPGYVEVG 49 (52)
T ss_pred CCCCCCCCCcCCCCCcCEEcC---CEeECCCCCEecC
Confidence 346678999999999999954 4799999998654
No 27
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=75.52 E-value=0.52 Score=40.23 Aligned_cols=14 Identities=36% Similarity=0.790 Sum_probs=5.9
Q ss_pred HHHhheeeeeeecc
Q 013983 390 VLIAGYLIRKRRRN 403 (432)
Q Consensus 390 ~~~~~~~~~~rrr~ 403 (432)
++++.|+++|||||
T Consensus 81 Illi~y~irR~~Kk 94 (122)
T PF01102_consen 81 ILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHhcc
Confidence 33444555555554
No 28
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=74.40 E-value=12 Score=29.15 Aligned_cols=35 Identities=23% Similarity=0.522 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHhc--cCCeEeEEeccccCCCcceeeeccc
Q 013983 306 SMNLKECREGCLE--NSSCMAYTNSDIRGGGSGCAMWFGE 343 (432)
Q Consensus 306 ~~~~~~C~~~Cl~--nCsC~a~~y~~~~~~g~gC~~w~~~ 343 (432)
..+.++|.+.|++ +=.|.++.|.. ....|.+-..+
T Consensus 24 ~~s~~~C~~~C~~~~~f~CrSf~y~~---~~~~C~L~~~~ 60 (80)
T cd01099 24 VASLEECLRKCLEETEFTCRSFNYNY---KSKECILSDED 60 (80)
T ss_pred cCCHHHHHHHhCCCCCceEeEEEEEc---CCCEEEEeCCC
Confidence 4689999999999 89999999963 23569875433
No 29
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=73.75 E-value=1.9 Score=27.99 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=13.8
Q ss_pred ccccCCCCcccCCCCCcc
Q 013983 244 ICIIGQSPVCQCLKGFKP 261 (432)
Q Consensus 244 iC~~~~~~~C~C~~GF~~ 261 (432)
.|+.+...+|.||.||..
T Consensus 11 ~CDpn~~~~C~CPeGyIl 28 (34)
T PF09064_consen 11 DCDPNSPGQCFCPEGYIL 28 (34)
T ss_pred ccCCCCCCceeCCCceEe
Confidence 455555668999999975
No 30
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=72.48 E-value=6.9 Score=31.97 Aligned_cols=8 Identities=38% Similarity=0.667 Sum_probs=5.1
Q ss_pred CCCCCccC
Q 013983 255 CLKGFKPK 262 (432)
Q Consensus 255 C~~GF~~~ 262 (432)
|.+|+.+.
T Consensus 9 C~~g~~~~ 16 (96)
T PTZ00382 9 CDSDKKPN 16 (96)
T ss_pred CCCCCccC
Confidence 66777654
No 31
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=72.31 E-value=3 Score=26.56 Aligned_cols=31 Identities=29% Similarity=0.669 Sum_probs=22.0
Q ss_pred CCCcccccCCCCcccccCC-CCcccCCCCCcc
Q 013983 231 DQCDTYGLCGAYGICIIGQ-SPVCQCLKGFKP 261 (432)
Q Consensus 231 ~~C~~~~~CG~~giC~~~~-~~~C~C~~GF~~ 261 (432)
++|.....|...+.|.... ...|.|++||..
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCcC
Confidence 4566545687788897543 457999999863
No 32
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=71.44 E-value=1.3 Score=43.53 Aligned_cols=10 Identities=20% Similarity=0.517 Sum_probs=0.0
Q ss_pred heeeeeeecc
Q 013983 394 GYLIRKRRRN 403 (432)
Q Consensus 394 ~~~~~~rrr~ 403 (432)
+++++||||+
T Consensus 166 a~icyrrkR~ 175 (290)
T PF05454_consen 166 ACICYRRKRK 175 (290)
T ss_dssp ----------
T ss_pred HHHhhhhhhc
Confidence 3445655554
No 33
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=70.30 E-value=2.1 Score=42.48 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHhheeeeeeecc
Q 013983 381 ISTAALLAVVLIAGYLIRKRRRN 403 (432)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~rrr~ 403 (432)
.+++++++++++++|++.|||++
T Consensus 278 G~~La~lvlivLiaYli~Rrr~~ 300 (306)
T PF01299_consen 278 GAALAGLVLIVLIAYLIGRRRSR 300 (306)
T ss_pred HHHHHHHHHHHHHhheeEecccc
Confidence 33334344455566777766665
No 34
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=70.08 E-value=1.1 Score=22.81 Aligned_cols=10 Identities=40% Similarity=1.049 Sum_probs=7.1
Q ss_pred cccCCCCCcc
Q 013983 252 VCQCLKGFKP 261 (432)
Q Consensus 252 ~C~C~~GF~~ 261 (432)
.|.|++||.-
T Consensus 1 ~C~C~~G~~G 10 (13)
T PF12661_consen 1 TCQCPPGWTG 10 (13)
T ss_dssp EEEE-TTEET
T ss_pred CccCcCCCcC
Confidence 4899999963
No 35
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=66.98 E-value=4.5 Score=25.97 Aligned_cols=24 Identities=25% Similarity=0.762 Sum_probs=18.9
Q ss_pred ccCCCCcccccCCCCcccCCCCCcc
Q 013983 237 GLCGAYGICIIGQSPVCQCLKGFKP 261 (432)
Q Consensus 237 ~~CG~~giC~~~~~~~C~C~~GF~~ 261 (432)
..|...|.|... ...|.|.+||.-
T Consensus 6 ~~C~~~G~C~~~-~g~C~C~~g~~G 29 (32)
T PF07974_consen 6 NICSGHGTCVSP-CGRCVCDSGYTG 29 (32)
T ss_pred CccCCCCEEeCC-CCEEECCCCCcC
Confidence 468899999754 468999999863
No 36
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=63.37 E-value=1.9 Score=28.55 Aligned_cols=25 Identities=28% Similarity=0.640 Sum_probs=17.5
Q ss_pred cccCCCCcccccCC-CCcccCCCCCc
Q 013983 236 YGLCGAYGICIIGQ-SPVCQCLKGFK 260 (432)
Q Consensus 236 ~~~CG~~giC~~~~-~~~C~C~~GF~ 260 (432)
.+-|.++..|.... ...|.|.+||.
T Consensus 5 ~~~C~~nA~C~~~~~~~~C~C~~Gy~ 30 (36)
T PF12947_consen 5 NGGCHPNATCTNTGGSYTCTCKPGYE 30 (36)
T ss_dssp GGGS-TTCEEEE-TTSEEEEE-CEEE
T ss_pred CCCCCCCcEeecCCCCEEeECCCCCc
Confidence 35788999998753 56799999996
No 37
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=62.59 E-value=4.3 Score=24.36 Aligned_cols=12 Identities=25% Similarity=0.880 Sum_probs=9.9
Q ss_pred cccCCCCCccCC
Q 013983 252 VCQCLKGFKPKS 263 (432)
Q Consensus 252 ~C~C~~GF~~~~ 263 (432)
.|+|++||+...
T Consensus 3 ~C~C~~Gy~l~~ 14 (24)
T PF12662_consen 3 TCSCPPGYQLSP 14 (24)
T ss_pred EeeCCCCCcCCC
Confidence 699999998643
No 38
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=61.51 E-value=14 Score=30.08 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=21.1
Q ss_pred CCCCCcEEEEcCCCCCCCCCcceEEEecCCcEEEE
Q 013983 11 SYPPHEVVWVANRLNPINDSFGFLMINKTGNLVLT 45 (432)
Q Consensus 11 ~i~~~tvVW~ANr~~Pv~~~~~~L~l~~dG~LvL~ 45 (432)
..|..++.|+-+....+. .+..+.++.+|+|.+.
T Consensus 30 g~P~P~i~W~~~~~~~i~-~~~Ri~~~~~GnL~fs 63 (95)
T cd05845 30 SAVPLRIYWMNSDLLHIT-QDERVSMGQNGNLYFA 63 (95)
T ss_pred CCCCCEEEEECCCCcccc-ccccEEECCCceEEEE
Confidence 345677888844433343 3456777777888774
No 39
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=58.95 E-value=3.2 Score=35.76 Aligned_cols=10 Identities=20% Similarity=0.301 Sum_probs=5.3
Q ss_pred eeeeeeeccc
Q 013983 395 YLIRKRRRNI 404 (432)
Q Consensus 395 ~~~~~rrr~~ 404 (432)
+++.+++|++
T Consensus 17 ~~~~~~~rRR 26 (130)
T PF12273_consen 17 FLFYCHNRRR 26 (130)
T ss_pred HHHHHHHHHH
Confidence 3346665543
No 40
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=57.99 E-value=1.5 Score=43.33 Aligned_cols=6 Identities=17% Similarity=0.656 Sum_probs=2.2
Q ss_pred eeeecc
Q 013983 398 RKRRRN 403 (432)
Q Consensus 398 ~~rrr~ 403 (432)
+||||+
T Consensus 281 YRRKKK 286 (299)
T PF02009_consen 281 YRRKKK 286 (299)
T ss_pred HHHHhh
Confidence 333333
No 41
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=55.95 E-value=1.6 Score=43.77 Aligned_cols=8 Identities=50% Similarity=1.153 Sum_probs=4.2
Q ss_pred CCcccCCC
Q 013983 250 SPVCQCLK 257 (432)
Q Consensus 250 ~~~C~C~~ 257 (432)
-|.|-|-.
T Consensus 126 IPTCvCEK 133 (353)
T TIGR01477 126 IPTCVCEK 133 (353)
T ss_pred Cccccccc
Confidence 35565543
No 42
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.55 E-value=22 Score=34.46 Aligned_cols=50 Identities=26% Similarity=0.325 Sum_probs=36.7
Q ss_pred CCCCCCcEEEEcCCCCCCCCC----cceEEE-ecCCcEEEEcCCCcEEEecCCCC
Q 013983 10 KSYPPHEVVWVANRLNPINDS----FGFLMI-NKTGNLVLTSQSNIVVWSAYLSK 59 (432)
Q Consensus 10 ~~i~~~tvVW~ANr~~Pv~~~----~~~L~l-~~dG~LvL~~~~g~~vWst~~s~ 59 (432)
++..+.+..|-|.|..|+-.+ +....+ +-||+|.-.+..|+.||...+.+
T Consensus 164 ~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~G 218 (354)
T KOG4649|consen 164 KNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKG 218 (354)
T ss_pred cCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCC
Confidence 345567899999999998754 123333 47899988888899999766543
No 43
>smart00181 EGF Epidermal growth factor-like domain.
Probab=55.14 E-value=9.6 Score=24.10 Aligned_cols=24 Identities=33% Similarity=0.715 Sum_probs=17.5
Q ss_pred ccCCCCcccccC-CCCcccCCCCCcc
Q 013983 237 GLCGAYGICIIG-QSPVCQCLKGFKP 261 (432)
Q Consensus 237 ~~CG~~giC~~~-~~~~C~C~~GF~~ 261 (432)
..|... .|... +...|.|++||..
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCcc
Confidence 456666 78654 4578999999964
No 44
>PTZ00046 rifin; Provisional
Probab=54.26 E-value=1.8 Score=43.56 Aligned_cols=8 Identities=50% Similarity=1.153 Sum_probs=4.0
Q ss_pred CCcccCCC
Q 013983 250 SPVCQCLK 257 (432)
Q Consensus 250 ~~~C~C~~ 257 (432)
-|.|-|-.
T Consensus 123 IPTCVCEK 130 (358)
T PTZ00046 123 IPTCVCEK 130 (358)
T ss_pred Cccccccc
Confidence 35555543
No 45
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=53.22 E-value=3.1 Score=40.38 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=7.5
Q ss_pred HHHhheeeeeeecc
Q 013983 390 VLIAGYLIRKRRRN 403 (432)
Q Consensus 390 ~~~~~~~~~~rrr~ 403 (432)
++++.+|++||||+
T Consensus 275 liiLYiWlyrrRK~ 288 (295)
T TIGR01478 275 LIILYIWLYRRRKK 288 (295)
T ss_pred HHHHHHHHHHhhcc
Confidence 34444555666665
No 46
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=52.61 E-value=37 Score=34.57 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=43.7
Q ss_pred CCCCcEEEEcCCC----------CCCCCCcceEEE-ecCCcEEEEcC-CCcEEEecCCCCCc------------CCc---
Q 013983 12 YPPHEVVWVANRL----------NPINDSFGFLMI-NKTGNLVLTSQ-SNIVVWSAYLSKEV------------QTP--- 64 (432)
Q Consensus 12 i~~~tvVW~ANr~----------~Pv~~~~~~L~l-~~dG~LvL~~~-~g~~vWst~~s~~~------------~~~--- 64 (432)
.....++|..+=. .|+... +.+.+ +.+|.|+=.|. +|.++|+.+..... ...
T Consensus 41 ~~~~~~~W~~~~g~g~~~~~~~~sPvv~~-~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~ 119 (394)
T PRK11138 41 QFTPTTVWSTSVGDGVGDYYSRLHPAVAY-NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA 119 (394)
T ss_pred cCCcceeeEEEcCCCCccceeeeccEEEC-CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE
Confidence 4455678986632 344432 34444 45677766664 68999998753210 000
Q ss_pred --eEEEEecCCCEEEEeccCCCCCceEEeeecC
Q 013983 65 --VVLQLLDSGNLVLRDEHDGDSETYFWQSFDY 95 (432)
Q Consensus 65 --~~a~LldsGNLVL~d~~~~~~~~~lWQSFd~ 95 (432)
.+-.--.+|+|+-.|.. +++.+|+ ++-
T Consensus 120 ~~~v~v~~~~g~l~ald~~---tG~~~W~-~~~ 148 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAE---DGEVAWQ-TKV 148 (394)
T ss_pred CCEEEEEcCCCEEEEEECC---CCCCccc-ccC
Confidence 11122356777777754 3678995 443
No 47
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=52.55 E-value=23 Score=21.63 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=14.6
Q ss_pred EEEecCCcEEEEcCCCcEEE
Q 013983 34 LMINKTGNLVLTSQSNIVVW 53 (432)
Q Consensus 34 L~l~~dG~LvL~~~~g~~vW 53 (432)
+.++.+|+|++.|....-||
T Consensus 7 vav~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 7 VAVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEETTSEEEEEECCCTEEE
T ss_pred EEEeCCCCEEEEECCCCEEE
Confidence 67778888888887655554
No 48
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=51.63 E-value=4.5 Score=25.77 Aligned_cols=23 Identities=30% Similarity=0.683 Sum_probs=17.7
Q ss_pred cCCCCcccccC--CCCcccCCCCCc
Q 013983 238 LCGAYGICIIG--QSPVCQCLKGFK 260 (432)
Q Consensus 238 ~CG~~giC~~~--~~~~C~C~~GF~ 260 (432)
.|...|.|... ....|.|++||.
T Consensus 5 ~C~n~g~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 5 PCQNGGTCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp SSTTTEEEEEESTSEEEEEEBTTEE
T ss_pred cCCCCeEEEeCCCCCEEeECCCCCc
Confidence 67777888654 346899999986
No 49
>PTZ00370 STEVOR; Provisional
Probab=51.11 E-value=3.6 Score=40.09 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=11.7
Q ss_pred CCCCCcccCCCCCCCCCCCeEEEee
Q 013983 268 DRSQGCVRSKPLNYSRQDGFIKFTE 292 (432)
Q Consensus 268 ~~s~GC~r~~~l~C~~~d~F~~l~~ 292 (432)
+--.+|.|..-. |.-+.-|+.+-|
T Consensus 167 hLK~rC~~gi~~-CsVGSafLT~IG 190 (296)
T PTZ00370 167 HLKHRCTGGICS-CSLGSALLTLIG 190 (296)
T ss_pred hhhccCCCeeEe-eccHHHHHHHHH
Confidence 445578776532 433333444433
No 50
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=47.15 E-value=42 Score=26.96 Aligned_cols=18 Identities=11% Similarity=-0.110 Sum_probs=12.5
Q ss_pred eeeeecccccceeeeccc
Q 013983 397 IRKRRRNIAGIIALHFPS 414 (432)
Q Consensus 397 ~~~rrr~~~~~~~~~~~~ 414 (432)
++|-||.+..+.+.|...
T Consensus 65 v~KAkrqrsTeEigFG~t 82 (91)
T PF01708_consen 65 VLKAKRQRSTEEIGFGNT 82 (91)
T ss_pred eeeeccCCceeeeeeCCC
Confidence 567777777777777653
No 51
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=45.08 E-value=24 Score=32.35 Aligned_cols=10 Identities=20% Similarity=0.720 Sum_probs=4.0
Q ss_pred Hhheeeeeee
Q 013983 392 IAGYLIRKRR 401 (432)
Q Consensus 392 ~~~~~~~~rr 401 (432)
++++++|.||
T Consensus 175 ~~~~~~~~R~ 184 (189)
T PF14610_consen 175 MYGFFFWNRK 184 (189)
T ss_pred HHhhheeecc
Confidence 3344444333
No 52
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=44.53 E-value=1.1e+02 Score=30.66 Aligned_cols=73 Identities=16% Similarity=0.331 Sum_probs=41.5
Q ss_pred CcEEEEcCCCCCC----------CCCcceEEEe-cCCcEEEEc-CCCcEEEecCCCCCcC-C-----ceEEEEecCCCEE
Q 013983 15 HEVVWVANRLNPI----------NDSFGFLMIN-KTGNLVLTS-QSNIVVWSAYLSKEVQ-T-----PVVLQLLDSGNLV 76 (432)
Q Consensus 15 ~tvVW~ANr~~Pv----------~~~~~~L~l~-~dG~LvL~~-~~g~~vWst~~s~~~~-~-----~~~a~LldsGNLV 76 (432)
-.++|..+-..++ .. .+.+.+. .+|.|.-.| .+|.++|+.+...... . .....-..+|+|+
T Consensus 40 ~~~~W~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ 118 (377)
T TIGR03300 40 VDQVWSASVGDGVGHYYLRLQPAVA-GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVI 118 (377)
T ss_pred ceeeeEEEcCCCcCccccccceEEE-CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEE
Confidence 4578998754443 22 2344444 567887777 5789999977543211 1 1111222456666
Q ss_pred EEeccCCCCCceEEe
Q 013983 77 LRDEHDGDSETYFWQ 91 (432)
Q Consensus 77 L~d~~~~~~~~~lWQ 91 (432)
-.|.. +++++|+
T Consensus 119 ald~~---tG~~~W~ 130 (377)
T TIGR03300 119 ALDAE---DGKELWR 130 (377)
T ss_pred EEECC---CCcEeee
Confidence 66653 3688996
No 53
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=43.82 E-value=12 Score=34.96 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=3.8
Q ss_pred EehhHHHHHH
Q 013983 379 IVISTAALLA 388 (432)
Q Consensus 379 ~v~~~~~~~~ 388 (432)
+|.+++++|+
T Consensus 43 iVAG~~tVIL 52 (221)
T PF08374_consen 43 IVAGIMTVIL 52 (221)
T ss_pred eecchhhhHH
Confidence 3333333333
No 54
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=43.75 E-value=16 Score=33.97 Aligned_cols=19 Identities=11% Similarity=0.295 Sum_probs=10.0
Q ss_pred ccCCeEeEEeccccCCCcceeee
Q 013983 318 ENSSCMAYTNSDIRGGGSGCAMW 340 (432)
Q Consensus 318 ~nCsC~a~~y~~~~~~g~gC~~w 340 (432)
..|+..-+.-.. ...|+++
T Consensus 36 ~~C~l~Laq~~~----~~q~Lll 54 (202)
T PF06365_consen 36 DDCSLSLAQSEE----NQQCLLL 54 (202)
T ss_pred CCcEEEEecCCC----CcceEEE
Confidence 466666655431 2457664
No 55
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=43.10 E-value=3.8 Score=31.87 Aligned_cols=9 Identities=11% Similarity=-0.075 Sum_probs=3.3
Q ss_pred hheeeeeee
Q 013983 393 AGYLIRKRR 401 (432)
Q Consensus 393 ~~~~~~~rr 401 (432)
+.++++||+
T Consensus 19 ~~~~~~rr~ 27 (75)
T PF14575_consen 19 IVIVCFRRC 27 (75)
T ss_dssp HHHCCCTT-
T ss_pred eEEEEEeeE
Confidence 334444443
No 56
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=42.41 E-value=6.3 Score=33.62 Aligned_cols=12 Identities=42% Similarity=0.972 Sum_probs=0.0
Q ss_pred HHhheeeeeeec
Q 013983 391 LIAGYLIRKRRR 402 (432)
Q Consensus 391 ~~~~~~~~~rrr 402 (432)
++.++++|||.|
T Consensus 94 llsg~lv~rrcr 105 (129)
T PF12191_consen 94 LLSGFLVWRRCR 105 (129)
T ss_dssp ------------
T ss_pred HHHHHHHHhhhh
Confidence 334555554443
No 57
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=42.34 E-value=12 Score=30.80 Aligned_cols=9 Identities=22% Similarity=0.696 Sum_probs=4.4
Q ss_pred eeeeeeecc
Q 013983 395 YLIRKRRRN 403 (432)
Q Consensus 395 ~~~~~rrr~ 403 (432)
|.+.|.||+
T Consensus 84 FVILRer~~ 92 (101)
T PF06024_consen 84 FVILRERQK 92 (101)
T ss_pred EEEEecccc
Confidence 444555544
No 58
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=42.20 E-value=7 Score=32.69 Aligned_cols=12 Identities=42% Similarity=0.636 Sum_probs=0.0
Q ss_pred HHHhheeeeeee
Q 013983 390 VLIAGYLIRKRR 401 (432)
Q Consensus 390 ~~~~~~~~~~rr 401 (432)
|++++.|.+|||
T Consensus 39 LLliGCWYckRR 50 (118)
T PF14991_consen 39 LLLIGCWYCKRR 50 (118)
T ss_dssp ------------
T ss_pred HHHHhheeeeec
Confidence 444455554444
No 59
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=41.64 E-value=3.7e+02 Score=26.79 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=12.3
Q ss_pred ecCCcEEEEcC-CCcEEEecC
Q 013983 37 NKTGNLVLTSQ-SNIVVWSAY 56 (432)
Q Consensus 37 ~~dG~LvL~~~-~g~~vWst~ 56 (432)
+.+|.|+..|. .|..+|...
T Consensus 152 ~~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 152 TNDGRLTALDAATGERLWTYS 172 (377)
T ss_pred CCCCeEEEEEcCCCceeeEEc
Confidence 34566666664 566777654
No 60
>PHA03265 envelope glycoprotein D; Provisional
Probab=41.32 E-value=11 Score=37.79 Aligned_cols=8 Identities=25% Similarity=0.796 Sum_probs=4.8
Q ss_pred eeeeeeec
Q 013983 395 YLIRKRRR 402 (432)
Q Consensus 395 ~~~~~rrr 402 (432)
+.+|||||
T Consensus 369 ~~~~rr~k 376 (402)
T PHA03265 369 YVCLRRKK 376 (402)
T ss_pred HHHhhhhh
Confidence 44576665
No 61
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=41.12 E-value=6 Score=40.26 Aligned_cols=10 Identities=50% Similarity=0.810 Sum_probs=5.6
Q ss_pred heeeeeeecc
Q 013983 394 GYLIRKRRRN 403 (432)
Q Consensus 394 ~~~~~~rrr~ 403 (432)
+|++.||||+
T Consensus 406 ~~~~v~rrr~ 415 (436)
T PTZ00208 406 FFIMVKRRRN 415 (436)
T ss_pred hheeeeeccC
Confidence 4455666664
No 62
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=40.52 E-value=1.6e+02 Score=26.86 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=13.3
Q ss_pred eEEEecCCcEEEEcC-CCcEEEecC
Q 013983 33 FLMINKTGNLVLTSQ-SNIVVWSAY 56 (432)
Q Consensus 33 ~L~l~~dG~LvL~~~-~g~~vWst~ 56 (432)
.+..+.+|.|+..|. .|.++|+..
T Consensus 39 v~~~~~~~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 39 VYVASGDGNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp EEEEETTSEEEEEETTTSEEEEEEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEEee
Confidence 344455566665553 555666654
No 63
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=39.63 E-value=63 Score=29.60 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=29.2
Q ss_pred CCcEEEEcC-CCcEEEecCCCCCcCCceEE-EE---------ecCCCEEEEeccCCCCCceEEee
Q 013983 39 TGNLVLTSQ-SNIVVWSAYLSKEVQTPVVL-QL---------LDSGNLVLRDEHDGDSETYFWQS 92 (432)
Q Consensus 39 dG~LvL~~~-~g~~vWst~~s~~~~~~~~a-~L---------ldsGNLVL~d~~~~~~~~~lWQS 92 (432)
+|.|...|. .|..+|+.+.... .....+ .+ ..+|+|+..|.. .++++|+-
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~---tG~~~W~~ 62 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG-IGGPVATAVPDGGRVYVASGDGNLYALDAK---TGKVLWRF 62 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS-CSSEEETEEEETTEEEEEETTSEEEEEETT---TSEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCC-CCCccceEEEeCCEEEEEcCCCEEEEEECC---CCCEEEEe
Confidence 578887886 8899999865211 111121 22 255556666643 25788864
No 64
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=39.49 E-value=27 Score=31.66 Aligned_cols=12 Identities=8% Similarity=0.271 Sum_probs=5.1
Q ss_pred EecCCCCeEEEe
Q 013983 215 WNKATQSWELYS 226 (432)
Q Consensus 215 w~~~~~~W~~~~ 226 (432)
|-+.++.|..-|
T Consensus 8 y~d~~g~~~~~F 19 (179)
T PF13908_consen 8 YYDVMGQWDPGF 19 (179)
T ss_pred eecCCCCCccCC
Confidence 333444454433
No 65
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=39.00 E-value=24 Score=22.41 Aligned_cols=8 Identities=50% Similarity=1.032 Sum_probs=3.4
Q ss_pred eeeeeeec
Q 013983 395 YLIRKRRR 402 (432)
Q Consensus 395 ~~~~~rrr 402 (432)
++++||||
T Consensus 26 ~~~~~rk~ 33 (34)
T TIGR01167 26 LLLRKRKK 33 (34)
T ss_pred HHheeccc
Confidence 33444444
No 66
>PF15345 TMEM51: Transmembrane protein 51
Probab=37.25 E-value=21 Score=33.73 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=10.7
Q ss_pred EehhHHHHHHHHHHhheeeeeeecc
Q 013983 379 IVISTAALLAVVLIAGYLIRKRRRN 403 (432)
Q Consensus 379 ~v~~~~~~~~~~~~~~~~~~~rrr~ 403 (432)
.|+++++++++|+-+++-++.|||+
T Consensus 62 yVLVG~Gv~LLLLSICL~IR~KRr~ 86 (233)
T PF15345_consen 62 YVLVGSGVALLLLSICLSIRDKRRR 86 (233)
T ss_pred EehhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444445444333333334544444
No 67
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=33.00 E-value=14 Score=38.58 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=12.5
Q ss_pred CCCCCcccC-CCCCCCCCCCeEEEeeecCC
Q 013983 268 DRSQGCVRS-KPLNYSRQDGFIKFTELKLP 296 (432)
Q Consensus 268 ~~s~GC~r~-~~l~C~~~d~F~~l~~v~~p 296 (432)
....+|.+. .+-.|.....+.+..++++.
T Consensus 236 ~~y~~C~~~~~~~~C~~~~~~~~~~~~~~~ 265 (439)
T PF02480_consen 236 RRYANCSPSGWPRRCPSTSHIEPVPGLRWA 265 (439)
T ss_dssp EEEEEEBTTC-TTTTEEEEEE---TTEEE-
T ss_pred HhhcCCCCCCCcCCCCchhccCcCcccccc
Confidence 345688775 45578432222334444443
No 68
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=32.68 E-value=60 Score=31.44 Aligned_cols=34 Identities=18% Similarity=0.474 Sum_probs=26.5
Q ss_pred CCCCcEEEEcCCCCCCCCCcceEEEecCCcEEEEc
Q 013983 12 YPPHEVVWVANRLNPINDSFGFLMINKTGNLVLTS 46 (432)
Q Consensus 12 i~~~tvVW~ANr~~Pv~~~~~~L~l~~dG~LvL~~ 46 (432)
+-+.+..|+.-.+.++.++ +.++||+.|.|++.|
T Consensus 10 ~iDP~y~W~GP~g~~l~gn-~~~nIT~TG~L~~~~ 43 (271)
T PF07354_consen 10 LIDPTYLWTGPNGKPLSGN-SYVNITETGKLMFKN 43 (271)
T ss_pred cCCCceEEECCCCcccCCC-CeEEEccCceEEeec
Confidence 4566788888888888764 678888888888865
No 69
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=32.57 E-value=1.7e+02 Score=32.61 Aligned_cols=41 Identities=24% Similarity=0.436 Sum_probs=21.6
Q ss_pred CCCCcccccCCCCcccCCCCCccCCCCCCCCCCCcccCCCCCCC
Q 013983 239 CGAYGICIIGQSPVCQCLKGFKPKSGGYVDRSQGCVRSKPLNYS 282 (432)
Q Consensus 239 CG~~giC~~~~~~~C~C~~GF~~~~~~~~~~s~GC~r~~~l~C~ 282 (432)
||-+|-|.- ..|.|-+|+.-..-+-...+..|......-|+
T Consensus 557 C~g~G~C~C---G~CvC~~GwtG~~C~C~~std~C~~~~G~iCS 597 (783)
T KOG1226|consen 557 CGGHGRCEC---GRCVCNPGWTGSACNCPLSTDTCESSDGQICS 597 (783)
T ss_pred cCCCCeEeC---CcEEcCCCCccCCCCCCCCCccccCCCCceeC
Confidence 666666643 45778777764321111234566654444443
No 70
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=30.62 E-value=33 Score=37.21 Aligned_cols=8 Identities=38% Similarity=0.555 Sum_probs=3.5
Q ss_pred ecCCCEEE
Q 013983 70 LDSGNLVL 77 (432)
Q Consensus 70 ldsGNLVL 77 (432)
.++.||-+
T Consensus 50 ~~~~n~tV 57 (684)
T PF12877_consen 50 QESSNLTV 57 (684)
T ss_pred cCCccEEE
Confidence 44444433
No 71
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=29.92 E-value=40 Score=37.74 Aligned_cols=30 Identities=27% Similarity=0.623 Sum_probs=23.3
Q ss_pred CCCcccccCCCCcccccCC-CCcccCCCCCcc
Q 013983 231 DQCDTYGLCGAYGICIIGQ-SPVCQCLKGFKP 261 (432)
Q Consensus 231 ~~C~~~~~CG~~giC~~~~-~~~C~C~~GF~~ 261 (432)
|+|. +..|-++..|.... +-.|.|.|||.-
T Consensus 828 DeC~-psrChp~A~CyntpgsfsC~C~pGy~G 858 (1289)
T KOG1214|consen 828 DECS-PSRCHPAATCYNTPGSFSCRCQPGYYG 858 (1289)
T ss_pred cccC-ccccCCCceEecCCCcceeecccCccC
Confidence 6777 88899999997653 457999999863
No 72
>PF15102 TMEM154: TMEM154 protein family
Probab=29.51 E-value=50 Score=29.08 Aligned_cols=17 Identities=6% Similarity=-0.035 Sum_probs=9.2
Q ss_pred HHHhheeeeeeeccccc
Q 013983 390 VLIAGYLIRKRRRNIAG 406 (432)
Q Consensus 390 ~~~~~~~~~~rrr~~~~ 406 (432)
|++.++++..+.|+.+.
T Consensus 71 LLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 71 LLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHheeEEeeccc
Confidence 45555555666655444
No 73
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=28.84 E-value=30 Score=33.95 Aligned_cols=17 Identities=6% Similarity=0.284 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHhheee
Q 013983 381 ISTAALLAVVLIAGYLI 397 (432)
Q Consensus 381 ~~~~~~~~~~~~~~~~~ 397 (432)
.++++++++++++|+++
T Consensus 235 AiALG~v~ll~l~Gii~ 251 (281)
T PF12768_consen 235 AIALGTVFLLVLIGIIL 251 (281)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444455555554
No 74
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=28.28 E-value=19 Score=34.91 Aligned_cols=17 Identities=35% Similarity=0.253 Sum_probs=0.0
Q ss_pred CCCCCCC-CCceeecccc
Q 013983 95 YPSDTLL-PGMKLGWDLK 111 (432)
Q Consensus 95 ~PTDTLL-PGq~L~~~~~ 111 (432)
||..+.+ |||++-.+..
T Consensus 10 ~Ps~~~~~~G~~~iL~s~ 27 (285)
T PF05337_consen 10 CPSVGAPVPGMEDILDSL 27 (285)
T ss_dssp ------------------
T ss_pred CCCcccccccHHHHHHHH
Confidence 4555544 8999887764
No 75
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=28.27 E-value=34 Score=30.14 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=4.8
Q ss_pred HHHHHHHHHhhe
Q 013983 384 AALLAVVLIAGY 395 (432)
Q Consensus 384 ~~~~~~~~~~~~ 395 (432)
+.++++|+++|+
T Consensus 16 i~Ll~lLl~cgi 27 (158)
T PF11770_consen 16 ISLLLLLLLCGI 27 (158)
T ss_pred HHHHHHHHHHhc
Confidence 333333444443
No 76
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=27.85 E-value=6.1e+02 Score=25.14 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=17.8
Q ss_pred EEEecCCCEEEEeccCCCCCceEEeeecCCCCCCCCCcee
Q 013983 67 LQLLDSGNLVLRDEHDGDSETYFWQSFDYPSDTLLPGMKL 106 (432)
Q Consensus 67 a~LldsGNLVL~d~~~~~~~~~lWQSFd~PTDTLLPGq~L 106 (432)
+.-+++|..|+....+ .+.+|+|.--+++.|-++.
T Consensus 150 ~~r~~dG~~vavs~~G-----~~~~s~~~G~~~w~~~~r~ 184 (302)
T PF14870_consen 150 ITRSSDGRYVAVSSRG-----NFYSSWDPGQTTWQPHNRN 184 (302)
T ss_dssp EEE-TTS-EEEEETTS-----SEEEEE-TT-SS-EEEE--
T ss_pred EEECCCCcEEEEECcc-----cEEEEecCCCccceEEccC
Confidence 4556899988877542 4667777555555554433
No 77
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=27.19 E-value=69 Score=40.24 Aligned_cols=27 Identities=22% Similarity=0.536 Sum_probs=19.4
Q ss_pred ccCCCCcccccCC--CCcccCCCCCccCC
Q 013983 237 GLCGAYGICIIGQ--SPVCQCLKGFKPKS 263 (432)
Q Consensus 237 ~~CG~~giC~~~~--~~~C~C~~GF~~~~ 263 (432)
..|---|.|+... .-.|.||+.|.-..
T Consensus 3870 npCqhgG~C~~~~~ggy~CkCpsqysG~~ 3898 (4289)
T KOG1219|consen 3870 NPCQHGGTCISQPKGGYKCKCPSQYSGNH 3898 (4289)
T ss_pred CcccCCCEecCCCCCceEEeCcccccCcc
Confidence 4566668898753 35799999987543
No 78
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=27.00 E-value=22 Score=36.32 Aligned_cols=13 Identities=8% Similarity=0.465 Sum_probs=7.9
Q ss_pred HHHhheeeeeeec
Q 013983 390 VLIAGYLIRKRRR 402 (432)
Q Consensus 390 ~~~~~~~~~~rrr 402 (432)
+.+++|++|||||
T Consensus 361 lg~~~~~~~rk~k 373 (374)
T TIGR03503 361 LGGIGFFVWRKKK 373 (374)
T ss_pred hheeeEEEEEEee
Confidence 4455666676665
No 79
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=26.59 E-value=1.9e+02 Score=30.60 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=44.7
Q ss_pred CCCCCcEEEEcCCC-------CCCCCCcceEEEe-cCCcEEEEcC-CCcEEEecCCCCC-------cCC--------ceE
Q 013983 11 SYPPHEVVWVANRL-------NPINDSFGFLMIN-KTGNLVLTSQ-SNIVVWSAYLSKE-------VQT--------PVV 66 (432)
Q Consensus 11 ~i~~~tvVW~ANr~-------~Pv~~~~~~L~l~-~dG~LvL~~~-~g~~vWst~~s~~-------~~~--------~~~ 66 (432)
+++.-+++|..+-. .|+... +.+.+. .+|.|+-.|. .|.++|+.+.... ... ..+
T Consensus 35 n~~~~~~~W~~~~~~~~~~~~sPvv~~-g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V 113 (488)
T cd00216 35 NVKKLKVAWTFSTGDERGQEGTPLVVD-GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKV 113 (488)
T ss_pred hhhcceeeEEEECCCCCCcccCCEEEC-CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeE
Confidence 34556789997654 355432 444444 5788887774 6899999764321 000 111
Q ss_pred EEEecCCCEEEEeccCCCCCceEEe
Q 013983 67 LQLLDSGNLVLRDEHDGDSETYFWQ 91 (432)
Q Consensus 67 a~LldsGNLVL~d~~~~~~~~~lWQ 91 (432)
..-..+|.++-+|.. +++.+|+
T Consensus 114 ~v~~~~g~v~AlD~~---TG~~~W~ 135 (488)
T cd00216 114 FFGTFDGRLVALDAE---TGKQVWK 135 (488)
T ss_pred EEecCCCeEEEEECC---CCCEeee
Confidence 111235677777764 3689998
No 80
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=24.52 E-value=4e+02 Score=22.36 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=30.8
Q ss_pred CcceEEEecCCcEEEEcCCCcE------EEecC---------CCCCcCCceE-EEEecCCCEEEEeccC
Q 013983 30 SFGFLMINKTGNLVLTSQSNIV------VWSAY---------LSKEVQTPVV-LQLLDSGNLVLRDEHD 82 (432)
Q Consensus 30 ~~~~L~l~~dG~LvL~~~~g~~------vWst~---------~s~~~~~~~~-a~LldsGNLVL~d~~~ 82 (432)
+...|.|.+||.|+|+.++++- -|+-. ..+......+ ..=++.|-|||.|.++
T Consensus 34 ~~~~leF~~dGKL~v~~gnng~~~~~~Gty~L~G~kLtL~~~p~g~t~k~~Vtv~~l~~~~Lvl~d~dg 102 (111)
T TIGR03066 34 DDVVIEFAKDGKLVVTIGEKGKEVKADGTYKLDGNKLTLTLKAGGKEKKETLTVKKLTDDELVGKDPDG 102 (111)
T ss_pred CceEEEEcCCCeEEEecCCCCcEeccCceEEEECCEEEEEEcCCCccccceEEEEEecCCeEEEEcCCC
Confidence 3478999999999987654321 13321 1111111112 1236889999999864
No 81
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=24.34 E-value=18 Score=30.20 Aligned_cols=8 Identities=13% Similarity=0.285 Sum_probs=3.4
Q ss_pred eeeeeeec
Q 013983 395 YLIRKRRR 402 (432)
Q Consensus 395 ~~~~~rrr 402 (432)
++.||.+|
T Consensus 19 l~~wr~~~ 26 (107)
T PF15330_consen 19 LLAWRMKQ 26 (107)
T ss_pred HHHHHHHh
Confidence 33444443
No 82
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=24.01 E-value=20 Score=23.70 Aligned_cols=15 Identities=33% Similarity=0.640 Sum_probs=10.3
Q ss_pred CCCcccCCCCCccCC
Q 013983 249 QSPVCQCLKGFKPKS 263 (432)
Q Consensus 249 ~~~~C~C~~GF~~~~ 263 (432)
....|+|++||....
T Consensus 17 g~~~C~C~~Gy~L~~ 31 (36)
T PF14670_consen 17 GSYRCSCPPGYKLAE 31 (36)
T ss_dssp TSEEEE-STTEEE-T
T ss_pred CceEeECCCCCEECc
Confidence 356899999998754
No 83
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=23.97 E-value=3.4e+02 Score=22.07 Aligned_cols=50 Identities=12% Similarity=0.371 Sum_probs=28.0
Q ss_pred EEEEEecCCCcEEEEEEccccceEEEEEEecCCCCeEEEeecCCCCCcccccCCCC
Q 013983 187 YYTFNITNKAVISRIVMNQTLYVRRRFIWNKATQSWELYSDVPRDQCDTYGLCGAY 242 (432)
Q Consensus 187 ~~~~~~~~~s~~~rl~Ld~dG~l~r~y~w~~~~~~W~~~~~~p~~~C~~~~~CG~~ 242 (432)
...+.+.....+++++.+.+.+- ....|......-. ....|..+++|-.+
T Consensus 46 ~~r~~ld~~G~l~~~~w~~~~~~-W~~~~~~p~d~Cd-----~y~~CG~~g~C~~~ 95 (110)
T PF00954_consen 46 LSRLVLDSDGQLQRYIWNESTQS-WSVFWSAPKDQCD-----VYGFCGPNGICNSN 95 (110)
T ss_pred EEEEEEeeeeEEEEEEEecCCCc-EEEEEEecccCCC-----CccccCCccEeCCC
Confidence 33444444456667776665555 5555554333222 23678888888654
No 84
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=22.34 E-value=2.8e+02 Score=27.82 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=46.2
Q ss_pred EEEcCCCCCCCCCcceEEEecCCcEEEEcC-CCc-EEEecCC------CC---CcCCceEEEEecCCCEEEEeccCCCCC
Q 013983 18 VWVANRLNPINDSFGFLMINKTGNLVLTSQ-SNI-VVWSAYL------SK---EVQTPVVLQLLDSGNLVLRDEHDGDSE 86 (432)
Q Consensus 18 VW~ANr~~Pv~~~~~~L~l~~dG~LvL~~~-~g~-~vWst~~------s~---~~~~~~~a~LldsGNLVL~d~~~~~~~ 86 (432)
.=.||.+....+.-..+.-++.|+|+++.+ +|. -+|---. .+ .++...+|++..+|-++|....+ +-
T Consensus 251 fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D--S~ 328 (430)
T KOG0640|consen 251 FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD--ST 328 (430)
T ss_pred eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc--ce
Confidence 345888777665544577788899988754 444 4786311 11 12235578999999999986543 23
Q ss_pred ceEEe
Q 013983 87 TYFWQ 91 (432)
Q Consensus 87 ~~lWQ 91 (432)
.-||+
T Consensus 329 vkLWE 333 (430)
T KOG0640|consen 329 VKLWE 333 (430)
T ss_pred eeeee
Confidence 45886
No 85
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=21.89 E-value=1.4e+02 Score=18.10 Aligned_cols=16 Identities=19% Similarity=0.576 Sum_probs=7.9
Q ss_pred CCcEEEEcC-CCcEEEe
Q 013983 39 TGNLVLTSQ-SNIVVWS 54 (432)
Q Consensus 39 dG~LvL~~~-~g~~vWs 54 (432)
+|.|+-.|. .|.++|+
T Consensus 15 ~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 15 DGTLYALDAKTGEILWT 31 (33)
T ss_pred CCEEEEEEcccCcEEEE
Confidence 455544443 4555554
No 86
>PLN03150 hypothetical protein; Provisional
Probab=21.45 E-value=88 Score=34.30 Aligned_cols=12 Identities=42% Similarity=0.495 Sum_probs=5.7
Q ss_pred Hhheeeeeeecc
Q 013983 392 IAGYLIRKRRRN 403 (432)
Q Consensus 392 ~~~~~~~~rrr~ 403 (432)
++.+++|||||+
T Consensus 562 ~~~~~~~~~r~~ 573 (623)
T PLN03150 562 ICAMCWWKRRQN 573 (623)
T ss_pred HHHhhheeehhh
Confidence 333445555543
No 87
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=20.87 E-value=55 Score=28.12 Aligned_cols=11 Identities=18% Similarity=0.199 Sum_probs=5.9
Q ss_pred eeeeeeecccc
Q 013983 395 YLIRKRRRNIA 405 (432)
Q Consensus 395 ~~~~~rrr~~~ 405 (432)
++.|-|||+++
T Consensus 122 ~yr~~r~~~~~ 132 (139)
T PHA03099 122 VYRFTRRTKLP 132 (139)
T ss_pred hheeeecccCc
Confidence 33466666654
No 88
>PHA02887 EGF-like protein; Provisional
Probab=20.32 E-value=1.1e+02 Score=25.88 Aligned_cols=30 Identities=27% Similarity=0.712 Sum_probs=22.1
Q ss_pred CCCCcc--cccCCCCcccccC---CCCcccCCCCCc
Q 013983 230 RDQCDT--YGLCGAYGICIIG---QSPVCQCLKGFK 260 (432)
Q Consensus 230 ~~~C~~--~~~CG~~giC~~~---~~~~C~C~~GF~ 260 (432)
-.+|.- -++|= +|.|..- +.|.|.|++||.
T Consensus 83 f~pC~~eyk~YCi-HG~C~yI~dL~epsCrC~~GYt 117 (126)
T PHA02887 83 FEKCKNDFNDFCI-NGECMNIIDLDEKFCICNKGYT 117 (126)
T ss_pred ccccChHhhCEee-CCEEEccccCCCceeECCCCcc
Confidence 356755 46786 7899763 468999999995
Done!