BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013984
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LG3|A Chain A, 1.4a Crystal Structure Of Isocitrate Lyase From Yersinia
Pestis Co92
pdb|3LG3|B Chain B, 1.4a Crystal Structure Of Isocitrate Lyase From Yersinia
Pestis Co92
Length = 435
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 334 KFHELKELFAEEKFILCLGSRWTDMVLEQNASGEDAL--RGWLVAAYAASMAKSFHDPSL 391
K EL + + +I CLG+ L+Q +G +A+ GW VAA A + + + D SL
Sbjct: 53 KLWELLHGGSRKGYINCLGALTGGQALQQAKAGVEAIYXSGWQVAADANTASSXYPDQSL 112
>pdb|3AHJ|A Chain A, H553a Mutant Of Phosphoketolase From Bifidobacterium Breve
Length = 845
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 399 DKMNDVFTPLLSELQAKGWHTDRFLDGTGTRFAW 432
D M F P+L KGW +F+DG T +W
Sbjct: 304 DDMTRPFYPMLIFRTPKGWTCPKFIDGKKTEGSW 337
>pdb|3AHI|A Chain A, H320a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 399 DKMNDVFTPLLSELQAKGWHTDRFLDGTGTRFAW 432
D M F P+L KGW +F+DG T +W
Sbjct: 304 DDMTRPFYPMLIFRTPKGWTCPKFIDGKKTEGSW 337
>pdb|3AHH|A Chain A, H142a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 399 DKMNDVFTPLLSELQAKGWHTDRFLDGTGTRFAW 432
D M F P+L KGW +F+DG T +W
Sbjct: 304 DDMTRPFYPMLIFRTPKGWTCPKFIDGKKTEGSW 337
>pdb|3AHG|A Chain A, H64a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With A Tricyclic Ring Form Of Thiamine
Diphosphate
Length = 845
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 399 DKMNDVFTPLLSELQAKGWHTDRFLDGTGTRFAW 432
D M F P+L KGW +F+DG T +W
Sbjct: 304 DDMTRPFYPMLIFRTPKGWTCPKFIDGKKTEGSW 337
>pdb|3AHC|A Chain A, Resting Form Of Phosphoketolase From Bifidobacterium Breve
pdb|3AHD|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
2-Acetyl- Thiamine Diphosphate
pdb|3AHE|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
Dihydroxyethyl Thiamine Diphosphate
pdb|3AHF|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
Inorganic Phosphate
Length = 845
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 399 DKMNDVFTPLLSELQAKGWHTDRFLDGTGTRFAW 432
D M F P+L KGW +F+DG T +W
Sbjct: 304 DDMTRPFYPMLIFRTPKGWTCPKFIDGKKTEGSW 337
>pdb|1MI1|A Chain A, Crystal Structure Of The Ph-Beach Domain Of Human
Neurobeachin
pdb|1MI1|B Chain B, Crystal Structure Of The Ph-Beach Domain Of Human
Neurobeachin
Length = 414
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 331 KPSKFHELKELFAEEKFILCLGSRWTDMVLEQNASGEDALRGWLVAAY 378
KP F + E +F+ C +W D++ G +A+R V Y
Sbjct: 324 KPEDFVRINRXALESEFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHY 371
>pdb|4DNR|A Chain A, Crystal Structure Of The Cusba Heavy-metal Efflux Complex
From Escherichia Coli, E716f Mutant
Length = 1054
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 232 GLGAGIQLASTVCSSMQGKMIVGPLLSV 259
G GAG ++ S + + M G MI PLLS+
Sbjct: 1008 GTGAGSEVMSRIAAPMIGGMITAPLLSL 1035
>pdb|4DOP|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, R Mutant
Length = 1054
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 232 GLGAGIQLASTVCSSMQGKMIVGPLLSV 259
G GAG ++ S + + M G MI PLLS+
Sbjct: 1008 GTGAGSEVMSRIAAPMIGGMITAPLLSL 1035
>pdb|4DNT|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, Mutant
Length = 1054
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 232 GLGAGIQLASTVCSSMQGKMIVGPLLSV 259
G GAG ++ S + + M G MI PLLS+
Sbjct: 1008 GTGAGSEVMSRIAAPMIGGMITAPLLSL 1035
>pdb|3T51|A Chain A, Crystal Structures Of The Pre-Extrusion And Extrusion States
Of The Cusba Adaptor-Transporter Complex
pdb|3T53|A Chain A, Crystal Structures Of The Extrusion State Of The Cusba
Adaptor- Transporter Complex
pdb|3T56|A Chain A, Crystal Structure Of The Pre-Extrusion State Of The Cusba
Adaptor- Transporter Complex
Length = 1054
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 232 GLGAGIQLASTVCSSMQGKMIVGPLLSV 259
G GAG ++ S + + M G MI PLLS+
Sbjct: 1008 GTGAGSEVMSRIAAPMIGGMITAPLLSL 1035
>pdb|3NE5|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli
Length = 1054
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 232 GLGAGIQLASTVCSSMQGKMIVGPLLSV 259
G GAG ++ S + + M G MI PLLS+
Sbjct: 1008 GTGAGSEVMSRIAAPMIGGMITAPLLSL 1035
>pdb|3K07|A Chain A, Crystal Structure Of Cusa
pdb|3KSO|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter Cusa
pdb|3KSS|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter Cusa
pdb|3K0I|A Chain A, Crystal Structure Of Cu(I)cusa
Length = 1055
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 232 GLGAGIQLASTVCSSMQGKMIVGPLLSV 259
G GAG ++ S + + M G MI PLLS+
Sbjct: 1009 GTGAGSEVMSRIAAPMIGGMITAPLLSL 1036
>pdb|1T77|A Chain A, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|B Chain B, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|C Chain C, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|D Chain D, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
Length = 414
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 334 KFHELKELFAEEKFILCLGSRWTDMVLEQNASGEDALRGWLVAAY----AASMAKSFHDP 389
+F + L E +F+ C +W D++ G +A+R V Y A S DP
Sbjct: 327 EFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDP 386
Query: 390 SL 391
L
Sbjct: 387 VL 388
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,150,599
Number of Sequences: 62578
Number of extensions: 497291
Number of successful extensions: 1014
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1002
Number of HSP's gapped (non-prelim): 17
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)