BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013984
(432 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91W34|CP058_MOUSE UPF0420 protein C16orf58 homolog OS=Mus musculus PE=2 SV=1
Length = 466
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 181/381 (47%), Gaps = 39/381 (10%)
Query: 70 FFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRPTPAQ--ATVVSWI 127
P G+P SV+ YL Y + ++Q F S+ L+TQ++L G+ A A +W+
Sbjct: 75 LLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLQGLGVGNAKASVSAATSTWL 134
Query: 128 LKDGMQHVGKLICSNL-GARMDSEPKRWRILADALYDLGTGLEVLSPLCPQLFLEMAGLG 186
+KD +G++I + G+++D K+WR+ AD L D+ LE+++P+ P F
Sbjct: 135 VKDSTGMLGRIILAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPMYPIFFTMTVSTS 194
Query: 187 NFAKGIAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVVGLGAGIQLASTV--C 244
N AK I VA ATR + A+ N++D+ AK + T+ N+ GL + + V C
Sbjct: 195 NLAKCIVGVAGGATRAALTMHQARRNNMADVSAKDSSQETVVNLAGLLVSLLMLPLVSDC 254
Query: 245 SSMQGKMIVGPLLSVIHVYSVIEEMRAAPVNTLNPQRTAMIVADFVKTGRISSPADLRYR 304
S+ V LL+ +H+Y+ +RA + TLN R +++ F++ G + PA
Sbjct: 255 PSLSLGCFV--LLTALHIYANYRAVRALVLETLNESRLQLVLEHFLQRGEVLEPASANQM 312
Query: 305 EDL---LFPGRLIEDAGNVKVGRDPHKVVKPSKFHELKELFA--EEKFILCLGS--RWTD 357
E L +P ++ +G H +V S ELK+L E ++LC
Sbjct: 313 EPLWTGFWPSL------SLSLGVPLHHLV--SSVSELKQLVEGHHEPYLLCWNKSRNQVQ 364
Query: 358 MVLEQNASGEDALR----GWLVAAYA------ASMAKSFH----DP---SLTVLQDAYDK 400
+ L Q A E LR G ++ A +A+ H DP S ++++ +
Sbjct: 365 VALSQEAGPETVLRAATHGLILGALQEDGPLPGELAELRHQVQADPKKESWILVRETHQV 424
Query: 401 MNDVFTPLLSELQAKGWHTDR 421
++ +F L LQA GW T++
Sbjct: 425 LDTLFPKFLKGLQAAGWKTEK 445
>sp|Q499P8|CP058_RAT UPF0420 protein C16orf58 homolog OS=Rattus norvegicus PE=2 SV=1
Length = 466
Score = 128 bits (321), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 101/379 (26%), Positives = 176/379 (46%), Gaps = 35/379 (9%)
Query: 70 FFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRPTPAQ--ATVVSWI 127
P G+P SV+ YL+Y + ++Q F S+ L+TQ++L G+ A A +W+
Sbjct: 75 LLPQGFPDSVSPDYLQYQLWDSVQAFASSLSGSLATQAVLQGLGVGNAKASVSAATSTWL 134
Query: 128 LKDGMQHVGKLICSNL-GARMDSEPKRWRILADALYDLGTGLEVLSPLCPQLFLEMAGLG 186
+KD +G++I + G+++D K+WR+ AD L D LE+++P+ P F
Sbjct: 135 VKDSTGMLGRIIFAWWKGSKLDCNAKQWRLFADILNDTAMFLEIMAPMYPIFFTMTVSTS 194
Query: 187 NFAKGIAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVVGLGAGIQLASTVCSS 246
N AK I VA ATR + A+ N++D+ AK + T+ N+ GL + + V
Sbjct: 195 NLAKCIVGVAGGATRAALTMHQARRNNMADVSAKDSSQETVVNLAGLLVSLLMLPLVSDC 254
Query: 247 MQGKMIVGPLLSVIHVYSVIEEMRAAPVNTLNPQRTAMIVADFVKTGRISSPADLRYRED 306
+ + LL+ +H+Y+ +RA + TLN R +++ F++ G + PA E
Sbjct: 255 LSLSLGCFILLTALHIYANYRAVRALVLETLNESRLQLVLKHFLQRGEVLEPASANQMEP 314
Query: 307 L---LFPGRLIEDAGNVKVGRDPHKVVKPSKFHELKELFA--EEKFILCLG--SRWTDMV 359
L +P ++ +G H +V S ELK+L +E ++LC +
Sbjct: 315 LWTGFWPSL------SLSLGVPLHHLV--SSVSELKQLVEGHQEPYLLCWNQSQNQVQVA 366
Query: 360 LEQNASGEDALR----GWLVAAYAAS-------------MAKSFHDPSLTVLQDAYDKMN 402
L Q A E LR G ++ A + + S ++++ + ++
Sbjct: 367 LSQVAGPETVLRAATHGLILGALQEDGPLPGELAELRDMVQAGPKNESWILVRETHQVLD 426
Query: 403 DVFTPLLSELQAKGWHTDR 421
+F L LQA GW T++
Sbjct: 427 TLFPKFLKGLQAAGWKTEK 445
>sp|Q5R8F6|CP058_PONAB UPF0420 protein C16orf58 homolog OS=Pongo abelii PE=2 SV=1
Length = 468
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/411 (25%), Positives = 191/411 (46%), Gaps = 31/411 (7%)
Query: 35 VTRHYQFQPDGHLSVKVVDDSRPVYHRVVDSFLNKFFPSGYPFSVNEGYLRYTQFRALQH 94
++R + +P+G S +V P + F P G+P SV+ YL Y + ++Q
Sbjct: 44 LSRAFTVKPEGRDSGEVGAPGAP--SPPLSGLQAVFLPQGFPDSVSPDYLPYQLWDSVQA 101
Query: 95 FTSAALSVLSTQSLLFAAGLRPTPA--QATVVSWILKDGMQHVGKLICSNL-GARMDSEP 151
F S L+TQ++L G+ A A +W++KD +G+++ + G+++D
Sbjct: 102 FASGLSGSLATQAVLLGIGVGNAKATVSAATATWLVKDSTGMLGRIVFAWWKGSKLDCNA 161
Query: 152 KRWRILADALYDLGTGLEVLSPLCPQLFLEMAGLGNFAKGIAVVAARATRLPIYSSFAKE 211
K+WR+ AD L D+ LE+++P+ P F N AK I VA ATR + A+
Sbjct: 162 KQWRLFADILNDVAMFLEIMAPVYPICFTMTVSTSNLAKCIVSVAGGATRAALTVHQARR 221
Query: 212 GNLSDLFAKGEAISTLFNVVGLGAGIQLASTVCSSMQGKMIVGPLLSVIHVYSVIEEMRA 271
N++D+ AK + TL N+VGL + + V + L+ +H+Y+ +RA
Sbjct: 222 NNMADVSAKDSSQETLVNLVGLLVSLLMLPLVSGCPGFSLGCFFFLTALHIYANYRAVRA 281
Query: 272 APVNTLNPQRTAMIVADFVKTGRISSPADLRYREDLLFPGRLIEDAGNVKVGRDPHKVVK 331
+ TLN R +++ +++ G + +P R + L+ G A ++ +G H++V
Sbjct: 282 LVMETLNEGRLRLVLKHYLQRGEVLNPTAAN-RMEPLWTG--FWPAPSLSLGVPLHRLV- 337
Query: 332 PSKFHELKELFA--EEKFILCL--GSRWTDMVLEQNASGEDALR----GWLVAAYAAS-- 381
S EL++L +E ++LC +VL Q A + LR G ++ A
Sbjct: 338 -SSVFELQQLVEGHQEPYLLCWDQSRNQVQVVLNQKAGPKTILRAATHGLMLGALQGDGP 396
Query: 382 -----------MAKSFHDPSLTVLQDAYDKMNDVFTPLLSELQAKGWHTDR 421
+ S ++++ ++ ++ +F L LQ GW T++
Sbjct: 397 LPAELEELRNRVQAGPKKESWVIVKETHEVLDMLFPKFLKGLQDAGWKTEK 447
>sp|Q96GQ5|CP058_HUMAN UPF0420 protein C16orf58 OS=Homo sapiens GN=C16orf58 PE=1 SV=2
Length = 468
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 104/411 (25%), Positives = 190/411 (46%), Gaps = 31/411 (7%)
Query: 35 VTRHYQFQPDGHLSVKVVDDSRPVYHRVVDSFLNKFFPSGYPFSVNEGYLRYTQFRALQH 94
++R + +P+G + +V P + F P G+P SV+ YL Y + ++Q
Sbjct: 44 LSRAFTVKPEGRDAGEVGASGAP--SPPLSGLQAVFLPQGFPDSVSPDYLPYQLWDSVQA 101
Query: 95 FTSAALSVLSTQSLLFAAGLRPTPA--QATVVSWILKDGMQHVGKLICSNL-GARMDSEP 151
F S+ L+TQ++L G+ A A +W++KD +G+++ + G+++D
Sbjct: 102 FASSLSGSLATQAVLLGIGVGNAKATVSAATATWLVKDSTGMLGRIVFAWWKGSKLDCNA 161
Query: 152 KRWRILADALYDLGTGLEVLSPLCPQLFLEMAGLGNFAKGIAVVAARATRLPIYSSFAKE 211
K+WR+ AD L D+ LE+++P+ P F N AK I VA ATR + A+
Sbjct: 162 KQWRLFADILNDVAMFLEIMAPVYPICFTMTVSTSNLAKCIVSVAGGATRAALTVHQARR 221
Query: 212 GNLSDLFAKGEAISTLFNVVGLGAGIQLASTVCSSMQGKMIVGPLLSVIHVYSVIEEMRA 271
N++D+ AK + TL N+ GL + + V + L+ +H+Y+ +RA
Sbjct: 222 NNMADVSAKDSSQETLVNLAGLLVSLLMLPLVSGCPGFSLGCFFFLTALHIYANYRAVRA 281
Query: 272 APVNTLNPQRTAMIVADFVKTGRISSPADLRYREDLLFPGRLIEDAGNVKVGRDPHKVVK 331
+ TLN R +++ +++ G + P R + L+ G A ++ +G H++V
Sbjct: 282 LVMETLNEGRLRLVLKHYLQRGEVLDPTAAN-RMEPLWTG--FWPAPSLSLGVPLHRLV- 337
Query: 332 PSKFHELKELFA--EEKFILCL--GSRWTDMVLEQNASGEDALR----GWLVAAYAAS-- 381
S EL++L +E ++LC +VL Q A + LR G ++ A
Sbjct: 338 -SSVFELQQLVEGHQESYLLCWDQSQNQVQVVLNQKAGPKTILRAATHGLMLGALQGDGP 396
Query: 382 -----------MAKSFHDPSLTVLQDAYDKMNDVFTPLLSELQAKGWHTDR 421
+ S V+++ ++ ++ +F L LQ GW T++
Sbjct: 397 LPAELEELRNRVRAGPKKESWVVVKETHEVLDMLFPKFLKGLQDAGWKTEK 447
>sp|Q86K80|U420_DICDI UPF0420 protein OS=Dictyostelium discoideum GN=DDB_G0277179 PE=3
SV=1
Length = 527
Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 139/269 (51%), Gaps = 11/269 (4%)
Query: 70 FFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRPTPAQ--ATVVSWI 127
F P+GYP SV Y Y + ++Q S L+T+++L G+ + A + W+
Sbjct: 63 FLPNGYPDSVTTDYFGYQFWDSIQALCSTITGTLATRAILKGYGVGDSSATVASATTQWL 122
Query: 128 LKDGMQHVGKLICS-NLGARMDSEPKRWRILADALYDLGTGLEVLSPL-CPQLFLEMAGL 185
++DGM +G+++ + G +D K+WR AD L ++G E++SPL QLFL ++ +
Sbjct: 123 IRDGMGMIGRIVFAWRKGTDLDCNSKKWRYTADILNNIGMAFEMISPLFSSQLFLPLSCI 182
Query: 186 GNFAKGIAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVVGLGAGIQLASTV-- 243
G AK I VA T+ + FAK NL+D+ AK + T N+VG+ + ++S +
Sbjct: 183 GLIAKSICGVAGGCTKASLTQHFAKRDNLADVSAKDGSQETAVNLVGMLLSVIVSSFIND 242
Query: 244 CSSMQGKMIVGPLLSVIHVYSVIEEMRAAPVNTLNPQRTAMIVADFVKT-GRISSPADLR 302
+S+ +V + +H++ + A + ++N R +I F+ G I SP+++
Sbjct: 243 NTSLIVTWLVFLFFTSLHLFCNYRAVSAVQLKSINRYRAYLIYDYFIHNQGSIPSPSEIS 302
Query: 303 YREDLLFPGRLIEDAGNVKVGRDPHKVVK 331
E++LF + ++ ++VG + K
Sbjct: 303 KLENILFSIKELD----IRVGVSLCNIYK 327
>sp|Q5SM03|MURA_THET8 UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=murA
PE=3 SV=1
Length = 425
Score = 35.4 bits (80), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 19/96 (19%)
Query: 63 VDSFLNKFFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRP------ 116
+D+ L+K + SG+ V E ++R FRA A V + + F L+P
Sbjct: 261 LDALLDKLWRSGHRLEVGEDWIR---FRATP--DPAPFHVEAREYPGFPTDLQPIATAYL 315
Query: 117 --TPAQATVVSWILKDGMQHVGKLICSNLGARMDSE 150
P Q+TVV I D HVG+L ARM +E
Sbjct: 316 ATVPGQSTVVDRIYPDRFTHVGEL------ARMGAE 345
>sp|Q72GJ4|MURA_THET2 UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Thermus
thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
GN=murA PE=3 SV=2
Length = 425
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 19/96 (19%)
Query: 63 VDSFLNKFFPSGYPFSVNEGYLRYTQFRALQHFTSAALSVLSTQSLLFAAGLRP------ 116
+D+ L+K + SG+ V E ++R FRA A V + + F L+P
Sbjct: 261 LDALLDKLWRSGHRLEVGEDWIR---FRATP--DPAPFHVEAREYPGFPTDLQPIATAYL 315
Query: 117 --TPAQATVVSWILKDGMQHVGKLICSNLGARMDSE 150
P Q+TVV I D HVG+L ARM +E
Sbjct: 316 ATVPGQSTVVDRIYPDRFTHVGEL------ARMGAE 345
>sp|Q86XI2|CNDG2_HUMAN Condensin-2 complex subunit G2 OS=Homo sapiens GN=NCAPG2 PE=1 SV=1
Length = 1143
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 37 RHYQFQPDGHLSVKVVDDSRPVYHRVVDSFLNKFFPSGYPFSV 79
+ ++ P H+ V++ DSRPV R+V N F P P V
Sbjct: 493 KFWKICPMEHILVRLETDSRPVSRRLVSLIFNSFLPVNQPEEV 535
>sp|P42112|YXAM_BACSU Uncharacterized MFS-type transporter YxaM OS=Bacillus subtilis
(strain 168) GN=yxaM PE=3 SV=3
Length = 399
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 7 IKKQKKKEPDKSMSVQEIPIYWFETSDSVTRHYQFQPDGHLSVKVVDDSRPVYHRVVDSF 66
I+ +KK E + +++ + + ++R F+P G + ++H +V S+
Sbjct: 262 IRFEKKIEKNPYLALTSLDSMGMVMTFLLSR--AFRPLGIPCTAFLLAIEDIHHPIVTSY 319
Query: 67 LNKFFPSGYP---FSVNEG 82
LNKFFP Y FS+N G
Sbjct: 320 LNKFFPDSYKNTLFSLNSG 338
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,436,049
Number of Sequences: 539616
Number of extensions: 6610640
Number of successful extensions: 15784
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 15766
Number of HSP's gapped (non-prelim): 12
length of query: 432
length of database: 191,569,459
effective HSP length: 120
effective length of query: 312
effective length of database: 126,815,539
effective search space: 39566448168
effective search space used: 39566448168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)