Query 013984
Match_columns 432
No_of_seqs 182 out of 270
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 03:23:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ve7_A Kinetochore protein HEC 14.3 1.8E+02 0.0061 28.3 5.0 28 58-85 13-40 (315)
2 2vy1_A Protein leafy, leafy; D 13.7 1.9E+02 0.0065 25.9 4.4 51 368-422 78-136 (194)
3 2vik_A Villin 14T; actin-bindi 11.1 5E+02 0.017 21.8 6.2 46 340-385 38-90 (126)
4 3cip_G Gelsolin; actin, dictyo 9.5 5.4E+02 0.018 21.6 5.9 45 340-384 40-92 (128)
5 1t44_G Chimera of gelsolin dom 9.2 5.4E+02 0.018 22.2 5.9 45 340-384 37-89 (147)
6 2ff3_A Gelsolin; protein-prote 8.6 5.9E+02 0.02 22.1 5.9 45 340-384 59-111 (150)
7 3g2b_A Coenzyme PQQ synthesis 7.9 2.4E+02 0.0081 22.6 2.8 19 400-418 75-93 (95)
8 2dg7_A Putative transcriptiona 7.9 1.1E+02 0.0039 25.5 0.9 22 196-217 36-57 (195)
9 2rae_A Transcriptional regulat 7.2 1.4E+02 0.0047 25.1 1.1 24 196-219 46-69 (207)
10 2ebm_A RWD domain-containing p 7.0 1.2E+02 0.004 25.0 0.5 15 68-83 60-74 (128)
No 1
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=14.32 E-value=1.8e+02 Score=28.32 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=22.3
Q ss_pred hhhhHHHHHHHhhcCCCCCCccccCccc
Q 013984 58 VYHRVVDSFLNKFFPSGYPFSVNEGYLR 85 (432)
Q Consensus 58 ~~~~~~~~l~~~FLP~GyP~SVs~dYl~ 85 (432)
..+.+.+.+.+++-..|||+++|+.=++
T Consensus 13 ~q~~~~~~i~~fL~~~~~~~~is~k~L~ 40 (315)
T 2ve7_A 13 FIQQCIRQLCEFLTENGYAHNVSMKSLQ 40 (315)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCCTGGGS
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCcccCC
Confidence 4456778888888899999999887664
No 2
>2vy1_A Protein leafy, leafy; DNA-binding, polymorphism, transcription; 2.10A {Arabidopsis thaliana} PDB: 2vy2_A
Probab=13.74 E-value=1.9e+02 Score=25.87 Aligned_cols=51 Identities=16% Similarity=0.348 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHhccCCCCchhHHHHHHH--------HHHhhHHHHHHHHHhCCccCCcc
Q 013984 368 DALRGWLVAAYAASMAKSFHDPSLTVLQDAYD--------KMNDVFTPLLSELQAKGWHTDRF 422 (432)
Q Consensus 368 D~LkA~~hA~~l~~~~~~~~~~~~~~l~~S~~--------~~~~~f~~fl~~L~~~GW~~~~~ 422 (432)
--+|-|.|.+-|..+... ....|+.+++ |-+..|..++.-...+|||+|-+
T Consensus 78 PKMRHYVHCYALHCLdee----~Sn~LRr~fkeRgEnVGaWrqAcY~pLv~iaa~~~wDid~i 136 (194)
T 2vy1_A 78 PKMRHYVHCYALHCLDEE----ASNALRRAFKERGENVGSWRQACYKPLVNIACRHGWDIDAV 136 (194)
T ss_dssp HHHHHTHHHHHHHHHCHH----HHHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHTTTTCHHHH
T ss_pred HHHhhhhhhhhhhhcCHh----hHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHcCCChhhh
Confidence 357888888777655332 1235666654 35678999999999999999854
No 3
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A
Probab=11.12 E-value=5e+02 Score=21.75 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=37.1
Q ss_pred HhcCCCCeEEEecC-------eEeEEEEcCCCChHhHHHHHHHHHHHHHHhcc
Q 013984 340 ELFAEEKFILCLGS-------RWTDMVLEQNASGEDALRGWLVAAYAASMAKS 385 (432)
Q Consensus 340 ~~f~~e~YiL~~~~-------~~~~V~L~~~at~~D~LkA~~hA~~l~~~~~~ 385 (432)
+.|.++-||+.+.. ..++.-+-+++|.++.-.|..+|..|...+..
T Consensus 38 ~Fy~gd~YIvl~t~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~lgg 90 (126)
T 2vik_A 38 NFYEGDCYVLLSTRKTGSGFSYNIHYWLGKNSSQDEQGAAAIYTTQMDEYLGS 90 (126)
T ss_dssp CCCSSSCEEEEEEEECSSSEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred eeCCCCeEEEEEeccCCCceeEEEEEEeCCCCCchhHHHHHHHHHHHHHHcCC
Confidence 46899999988651 23688889999999999999999998876543
No 4
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*
Probab=9.50 E-value=5.4e+02 Score=21.60 Aligned_cols=45 Identities=7% Similarity=0.103 Sum_probs=36.5
Q ss_pred HhcCCCCeEEEecC--------eEeEEEEcCCCChHhHHHHHHHHHHHHHHhc
Q 013984 340 ELFAEEKFILCLGS--------RWTDMVLEQNASGEDALRGWLVAAYAASMAK 384 (432)
Q Consensus 340 ~~f~~e~YiL~~~~--------~~~~V~L~~~at~~D~LkA~~hA~~l~~~~~ 384 (432)
+.|.++-||+.+.- ..+|.-+-+++|.++.-.|.++|..|...+.
T Consensus 40 ~Fy~gd~YIvl~ty~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~lg 92 (128)
T 3cip_G 40 DFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLN 92 (128)
T ss_dssp EEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred eecCCCeEEEEEEEecCCCceEEEEEEEcCCCCCcchHHHHHHHHHHHHHHcC
Confidence 46899999987641 2368889999999999999999999887654
No 5
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1
Probab=9.19 E-value=5.4e+02 Score=22.17 Aligned_cols=45 Identities=7% Similarity=0.117 Sum_probs=36.6
Q ss_pred HhcCCCCeEEEec----C----eEeEEEEcCCCChHhHHHHHHHHHHHHHHhc
Q 013984 340 ELFAEEKFILCLG----S----RWTDMVLEQNASGEDALRGWLVAAYAASMAK 384 (432)
Q Consensus 340 ~~f~~e~YiL~~~----~----~~~~V~L~~~at~~D~LkA~~hA~~l~~~~~ 384 (432)
+.|.++-||+.+. . ..+|.-+-++++.++.-.|.++|.-|...+.
T Consensus 37 ~Fy~gd~YIvl~ty~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~lg 89 (147)
T 1t44_G 37 DFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLN 89 (147)
T ss_dssp EEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred eecCCCeEEEEEEEecCCCceEEEEEEEeCCCCChhHHHHHHHHHHHHHHHcC
Confidence 4689999998764 1 2368889999999999999999999987654
No 6
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*
Probab=8.56 E-value=5.9e+02 Score=22.10 Aligned_cols=45 Identities=7% Similarity=0.117 Sum_probs=36.5
Q ss_pred HhcCCCCeEEEec----C----eEeEEEEcCCCChHhHHHHHHHHHHHHHHhc
Q 013984 340 ELFAEEKFILCLG----S----RWTDMVLEQNASGEDALRGWLVAAYAASMAK 384 (432)
Q Consensus 340 ~~f~~e~YiL~~~----~----~~~~V~L~~~at~~D~LkA~~hA~~l~~~~~ 384 (432)
+.|.++-||+.+. . ..++.-+-+++|.++.-.|.++|..|...+.
T Consensus 59 ~FysgD~YIVl~ty~~~~g~~~~~IyfW~G~~ss~de~gaAA~~aveLd~~lg 111 (150)
T 2ff3_A 59 DFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLN 111 (150)
T ss_dssp EEETTSEEEEEEEEECTTSSEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred eecCCCeEEEEEEEecCCCceEEEEEEEeCCCCCchhHHHHHHHHHHHHHHcC
Confidence 5689999998764 1 2468888999999999999999999887654
No 7
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=7.93 E-value=2.4e+02 Score=22.58 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=15.7
Q ss_pred HHHhhHHHHHHHHHhCCcc
Q 013984 400 KMNDVFTPLLSELQAKGWH 418 (432)
Q Consensus 400 ~~~~~f~~fl~~L~~~GW~ 418 (432)
.+.++...|+++|.++||-
T Consensus 75 ~i~~DV~~FL~~L~~~g~I 93 (95)
T 3g2b_A 75 EIETDVIELTTTLHQKRLL 93 (95)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHCcCE
Confidence 3456778999999999995
No 8
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=7.89 E-value=1.1e+02 Score=25.51 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=17.8
Q ss_pred hhhhhhhhHhhhhhhcCCcccc
Q 013984 196 AARATRLPIYSSFAKEGNLSDL 217 (432)
Q Consensus 196 a~~atra~i~~hFA~~~NlaDv 217 (432)
.+|.+|++|+.||.-++.|-.-
T Consensus 36 ~agvs~~t~Y~~F~sK~~Ll~~ 57 (195)
T 2dg7_A 36 RAGLTRRSYFRYFPDKREVLFG 57 (195)
T ss_dssp HTTCCHHHHHHHCSSTTGGGTT
T ss_pred HhCCCHHHHHHHcCCHHHHHHH
Confidence 4689999999999887776543
No 9
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=7.24 E-value=1.4e+02 Score=25.12 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=18.4
Q ss_pred hhhhhhhhHhhhhhhcCCcccccc
Q 013984 196 AARATRLPIYSSFAKEGNLSDLFA 219 (432)
Q Consensus 196 a~~atra~i~~hFA~~~NlaDv~A 219 (432)
.+|.+|++|++||.-++.|-.=..
T Consensus 46 ~agvs~~t~Y~~F~sK~~Ll~~~~ 69 (207)
T 2rae_A 46 ASGIARRTLFRYFPSKNAIPWGDF 69 (207)
T ss_dssp HTTSCHHHHHHHCSSTTTGGGCSH
T ss_pred HhCCCcchHhhhCCCHHHHHHHHH
Confidence 467999999999988777654333
No 10
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=7.00 E-value=1.2e+02 Score=24.95 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=11.0
Q ss_pred HhhcCCCCCCccccCc
Q 013984 68 NKFFPSGYPFSVNEGY 83 (432)
Q Consensus 68 ~~FLP~GyP~SVs~dY 83 (432)
.+-+|.+||++ .|.+
T Consensus 60 ~v~~p~~YP~~-~P~i 74 (128)
T 2ebm_A 60 KFTYSEKYPDE-APLY 74 (128)
T ss_dssp EEECCSSTTTS-CCEE
T ss_pred EEEeCCCCCCC-CceE
Confidence 46789999994 5653
Done!