Query 013984
Match_columns 432
No_of_seqs 182 out of 270
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 03:23:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013984.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013984hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d7ya3 d.87.1.1 (A:309-405) N 23.4 18 0.0013 27.1 2.2 36 269-304 52-87 (97)
2 d1q1ra3 d.87.1.1 (A:320-422) P 16.3 31 0.0023 26.1 2.1 36 269-304 50-85 (103)
3 d2o7ta2 a.121.1.1 (A:79-188) T 12.3 2E+02 0.014 21.5 6.0 52 365-416 2-60 (110)
4 d1vi0a1 a.4.1.9 (A:6-77) Hypot 11.8 19 0.0014 25.0 -0.4 19 196-214 30-48 (72)
5 d2hyja2 a.121.1.1 (A:83-200) P 11.7 2.3E+02 0.017 20.4 6.3 51 365-416 2-69 (118)
6 d1j72a1 d.109.1.1 (A:11-124) M 11.2 2.4E+02 0.017 21.4 6.2 45 340-384 31-79 (114)
7 d2vika_ d.109.1.1 (A:) Villin, 10.6 2.5E+02 0.018 21.6 6.2 45 340-384 38-89 (126)
8 d2fbqa1 a.4.1.9 (A:2-80) Trans 9.9 25 0.0018 24.8 -0.4 18 197-214 34-51 (79)
9 d3cipg1 d.109.1.1 (G:2-125) Ge 8.2 3.1E+02 0.022 20.9 5.9 45 340-384 36-88 (124)
10 d2fh1a1 d.109.1.1 (A:412-532) 8.0 3.2E+02 0.023 20.7 5.9 45 340-384 29-80 (121)
No 1
>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Probab=23.36 E-value=18 Score=27.10 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=30.6
Q ss_pred hhcccCCccCHHHHHHHHHHHHhcCCCCCHHHHhhc
Q 013984 269 MRAAPVNTLNPQRTAMIVADFVKTGRISSPADLRYR 304 (432)
Q Consensus 269 vr~v~l~tLN~~R~~iv~~~~l~~g~V~sp~evn~~ 304 (432)
=|.+-.-++|+.|-....+..++.|..|+|+++...
T Consensus 52 g~lvgv~~vn~~~~~~~~rrli~~~~~~~~~~LaD~ 87 (97)
T d1d7ya3 52 GRIVGATCVNNARDFAPLRRLLAVGAKPDRAALADP 87 (97)
T ss_dssp TEEEEEEEESCHHHHHHHHHHHHTTCCCCHHHHHSS
T ss_pred CEEEEEEEeCCHHHHHHHHHHHHCCCCCCHHHhcCC
Confidence 355556789999999999999999999999998863
No 2
>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}
Probab=16.25 E-value=31 Score=26.11 Aligned_cols=36 Identities=17% Similarity=0.058 Sum_probs=30.4
Q ss_pred hhcccCCccCHHHHHHHHHHHHhcCCCCCHHHHhhc
Q 013984 269 MRAAPVNTLNPQRTAMIVADFVKTGRISSPADLRYR 304 (432)
Q Consensus 269 vr~v~l~tLN~~R~~iv~~~~l~~g~V~sp~evn~~ 304 (432)
=+.+...++|+.|-....+..++.|..|+|++++..
T Consensus 50 ~~lvav~~vn~~~~~~~~r~li~~~~~~~~~~L~D~ 85 (103)
T d1q1ra3 50 DRVLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGDE 85 (103)
T ss_dssp TEEEEEEEESCHHHHHHHHHHHHTTCCCCHHHHTCT
T ss_pred CeEEEEEEeCCHHHHHHHHHHHHCCCCcCHHHhcCC
Confidence 345666789999999999999999999999988753
No 3
>d2o7ta2 a.121.1.1 (A:79-188) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=12.30 E-value=2e+02 Score=21.50 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=35.9
Q ss_pred ChHhHHHHHHHHHHHH---HHh----ccCCCCchhHHHHHHHHHHhhHHHHHHHHHhCC
Q 013984 365 SGEDALRGWLVAAYAA---SMA----KSFHDPSLTVLQDAYDKMNDVFTPLLSELQAKG 416 (432)
Q Consensus 365 t~~D~LkA~~hA~~l~---~~~----~~~~~~~~~~l~~S~~~~~~~f~~fl~~L~~~G 416 (432)
.|...++.|+|...=. .+. .+..+.....+....+.+.+.+..+++..+++|
T Consensus 2 DP~~Al~~~~~~~ve~~~~~l~~al~~~~~~~~~~~~~~~r~~l~~~~~~ll~rA~~aG 60 (110)
T d2o7ta2 2 DPEGVWTSFNQLLFDRGLGSLVPALAPESLDDLPDEVSALRRTTEKNTTTLINLAKQHG 60 (110)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhHhhhHHHHhccccCcCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3778899999875522 111 111111235678888999999999999999998
No 4
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=11.77 E-value=19 Score=24.98 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=15.1
Q ss_pred hhhhhhhhHhhhhhhcCCc
Q 013984 196 AARATRLPIYSSFAKEGNL 214 (432)
Q Consensus 196 a~~atra~i~~hFA~~~Nl 214 (432)
.+|.+|++|+.||.-+++|
T Consensus 30 ~agvs~~~~y~~F~~K~~L 48 (72)
T d1vi0a1 30 QAGVADGTIYLYFKNKEDI 48 (72)
T ss_dssp HHTSCHHHHHHHCSSHHHH
T ss_pred HHCcCHHHHHHHCcCHHHH
Confidence 4579999999999865544
No 5
>d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=11.66 E-value=2.3e+02 Score=20.41 Aligned_cols=51 Identities=12% Similarity=0.188 Sum_probs=33.1
Q ss_pred ChHhHHHHHHHHHHHHHHhccCC----------------CC-chhHHHHHHHHHHhhHHHHHHHHHhCC
Q 013984 365 SGEDALRGWLVAAYAASMAKSFH----------------DP-SLTVLQDAYDKMNDVFTPLLSELQAKG 416 (432)
Q Consensus 365 t~~D~LkA~~hA~~l~~~~~~~~----------------~~-~~~~l~~S~~~~~~~f~~fl~~L~~~G 416 (432)
++.+-|+|++++..- ...+... ++ -...+++.++...+.|.+.+++.+++|
T Consensus 2 ~~~~rL~a~~~~~~~-~~~~~~~~~GC~~~~~~~E~~~~~~~ir~~l~~~~~~~~~~l~~~l~~a~~~G 69 (118)
T d2hyja2 2 PGLRRLRAVCANSVG-YLEEPLLPGGCLLTAALSEYDGRPGRVRDAVAEVWSRWREQLRADLTAAVDKG 69 (118)
T ss_dssp TTHHHHHHHHHHHHH-HHHSCSSTTSCHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHH-HHcCCCCCCCChhHhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 467889999988543 3322211 00 125677777777888888888888877
No 6
>d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.18 E-value=2.4e+02 Score=21.37 Aligned_cols=45 Identities=9% Similarity=0.141 Sum_probs=35.9
Q ss_pred HhcCCCCeEEEecC----eEeEEEEcCCCChHhHHHHHHHHHHHHHHhc
Q 013984 340 ELFAEEKFILCLGS----RWTDMVLEQNASGEDALRGWLVAAYAASMAK 384 (432)
Q Consensus 340 ~~f~~e~YiL~~~~----~~~~V~L~~~at~~D~LkA~~hA~~l~~~~~ 384 (432)
+.|.++-||+.+.- ..++.-+-++++.+|.-.|.+.+..|...+.
T Consensus 31 ~Fy~gd~Yivl~~y~~~~~~i~fW~G~~ss~de~g~aa~~~veLd~~l~ 79 (114)
T d1j72a1 31 VFFSGDSYLVLHNGPEEVSHLHLWIGQQSSRDEQGACAVLAVQLDDYLG 79 (114)
T ss_dssp EEETTSEEEEEEECSSSCEEEEEEECTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred eeeCCCEEEEEEecCCcceEEEEEEcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 46789999988762 2467788888999999999999988876554
No 7
>d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=10.59 E-value=2.5e+02 Score=21.57 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=35.3
Q ss_pred HhcCCCCeEEEec----C---eEeEEEEcCCCChHhHHHHHHHHHHHHHHhc
Q 013984 340 ELFAEEKFILCLG----S---RWTDMVLEQNASGEDALRGWLVAAYAASMAK 384 (432)
Q Consensus 340 ~~f~~e~YiL~~~----~---~~~~V~L~~~at~~D~LkA~~hA~~l~~~~~ 384 (432)
+.|.++-||+.+. . ..++.-.-++++.+|.-.|.+.|.-+...+.
T Consensus 38 ~Fysgd~Yivl~ty~~~~~~~~~iy~W~G~~ss~~e~~~aa~~a~eLd~~l~ 89 (126)
T d2vika_ 38 NFYEGDCYVLLSTRKTGSGFSYNIHYWLGKNSSQDEQGAAAIYTTQMDEYLG 89 (126)
T ss_dssp CCCSSSCEEEEEEEECSSSEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred EEeCCCEEEEEEEEEcCCCcEEEEEEEecCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4689999999874 1 2457777788999999999999988876544
No 8
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.90 E-value=25 Score=24.77 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=14.5
Q ss_pred hhhhhhhHhhhhhhcCCc
Q 013984 197 ARATRLPIYSSFAKEGNL 214 (432)
Q Consensus 197 ~~atra~i~~hFA~~~Nl 214 (432)
+|.||++|+.||.-+++|
T Consensus 34 agvs~~s~y~~F~~K~~l 51 (79)
T d2fbqa1 34 AGVNLAAVNYHFGSKKAL 51 (79)
T ss_dssp HTSCHHHHHHHTCSHHHH
T ss_pred HCcChhHHHHHCcCHHHH
Confidence 579999999999865444
No 9
>d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.25 E-value=3.1e+02 Score=20.93 Aligned_cols=45 Identities=7% Similarity=0.117 Sum_probs=35.2
Q ss_pred HhcCCCCeEEEec----C----eEeEEEEcCCCChHhHHHHHHHHHHHHHHhc
Q 013984 340 ELFAEEKFILCLG----S----RWTDMVLEQNASGEDALRGWLVAAYAASMAK 384 (432)
Q Consensus 340 ~~f~~e~YiL~~~----~----~~~~V~L~~~at~~D~LkA~~hA~~l~~~~~ 384 (432)
+.|.++-||+.+. + ..++.-+-++++.+|.-.|.+.|.-|...+.
T Consensus 36 ~Fy~gd~YIil~ty~~~~g~~~~~iy~W~G~~ss~~e~~~aa~~aveLd~~l~ 88 (124)
T d3cipg1 36 DFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLN 88 (124)
T ss_dssp EEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred EEeCCCEEEEEEEEEcCCCCEeEEEEEEECCCCChhHHHHHHHHHHHHHHHcC
Confidence 4689999998753 1 2357788889999999999999988876544
No 10
>d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.04 E-value=3.2e+02 Score=20.66 Aligned_cols=45 Identities=4% Similarity=0.110 Sum_probs=34.8
Q ss_pred HhcCCCCeEEEec----C---eEeEEEEcCCCChHhHHHHHHHHHHHHHHhc
Q 013984 340 ELFAEEKFILCLG----S---RWTDMVLEQNASGEDALRGWLVAAYAASMAK 384 (432)
Q Consensus 340 ~~f~~e~YiL~~~----~---~~~~V~L~~~at~~D~LkA~~hA~~l~~~~~ 384 (432)
..|.++-||+.+. . ..+|.-+-.+++.++.-.|.+.|.-+...+.
T Consensus 29 ~Fy~gd~Yiv~~~y~~~g~~~~~iy~W~G~~ss~~e~~~aa~~a~eld~~l~ 80 (121)
T d2fh1a1 29 QFYGGDSYIILYNYRHGGRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELG 80 (121)
T ss_dssp EEETTSEEEEEEEEEETTEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred EEeCCCeEEEEEEEEcCCCceEEEEEEECCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4689999999764 1 2357788889999999999988887765433
Done!