BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013985
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V82|A Chain A, Crystal Structure Of Human Glcat-P Apo Form
pdb|1V82|B Chain B, Crystal Structure Of Human Glcat-P Apo Form
pdb|1V83|A Chain A, Crystal Structure Of Human Glcat-P In Complex With Udp And
Mn2+
pdb|1V83|B Chain B, Crystal Structure Of Human Glcat-P In Complex With Udp And
Mn2+
pdb|1V84|A Chain A, Crystal Structure Of Human Glcat-p In Complex With N-
Acetyllactosamine, Udp, And Mn2+
pdb|1V84|B Chain B, Crystal Structure Of Human Glcat-p In Complex With N-
Acetyllactosamine, Udp, And Mn2+
Length = 253
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 99/224 (44%), Gaps = 49/224 (21%)
Query: 161 TLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVE-AGGVTNETASLIAKSKLRTIH 219
T+ VVTPTY R Q LT + ++L+ VP +L W+VVE A T TA L+ + L H
Sbjct: 4 TIHVVTPTYSRPVQKAELTRMANTLLHVP-NLHWLVVEDAPRRTPLTARLLRDTGLNYTH 62
Query: 220 VGVDQKMPASWGG--------RHQLEAKMRLRALR--IVREEKLDGIVMFADDSNMHSME 269
+ V+ G R ++ + LR LR R G+V FADD N +S+E
Sbjct: 63 LHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLE 122
Query: 270 LFDEIQNVKWFGAVSVGILALAGNQDESSSVIMEKEEGGENTAMPVQGPACNSSNNLVGW 329
LF+E+++ + VSV +A G + + P N + +V W
Sbjct: 123 LFEEMRSTR---RVSVWPVAFVG-------------------GLRYEAPRVNGAGKVVRW 160
Query: 330 HTFNSLPYARKSATYIDDRATVLPRKLEWAGFVLNSRLLWKEAK 373
T P+ P ++ AGF +N RL+ + ++
Sbjct: 161 KTVFD-PHR--------------PFAIDMAGFAVNLRLILQRSQ 189
>pdb|1FGG|A Chain A, Crystal Structure Of 1,3-Glucuronyltransferase I (Glcat-I)
Complexed With Gal-Gal-Xyl, Udp, And Mn2+
pdb|1FGG|B Chain B, Crystal Structure Of 1,3-Glucuronyltransferase I (Glcat-I)
Complexed With Gal-Gal-Xyl, Udp, And Mn2+
pdb|1KWS|A Chain A, Crystal Structure Of Beta1,3-glucuronyltransferase I In
Complex With The Active Udp-glcua Donor
pdb|1KWS|B Chain B, Crystal Structure Of Beta1,3-glucuronyltransferase I In
Complex With The Active Udp-glcua Donor
Length = 261
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 114/282 (40%), Gaps = 65/282 (23%)
Query: 161 TLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVE-AGGVTNETASLIAKSKLRTIH 219
T+ VVTPTY R Q L + +L LVP L W++VE A G T + L+A S L H
Sbjct: 2 TIYVVTPTYARLVQKAELVRLSQTLSLVPR-LHWLLVEDAEGPTPLVSGLLAASGLLFTH 60
Query: 220 VGV----DQKM-PASWGGRHQLEAKMRLRALRIVR-------EEK------LDGIVMFAD 261
+ V Q++ G H + R +AL +R EK G+V FAD
Sbjct: 61 LVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFAD 120
Query: 262 DSNMHSMELFDEIQNVKWFGAVSVGILALAGNQDESSSVIMEKEEGGENTAMPVQGPACN 321
D N +S ELF+E+ +W VSV + L G + +GP
Sbjct: 121 DDNTYSRELFEEM---RWTRGVSVWPVGLVG-------------------GLRFEGPQVQ 158
Query: 322 SSNNLVGWHTFNSLPYARKSATYIDDRATVLPRKLEWAGFVLNSRLLWKEAKDKPEWVNX 381
+VG+HT + R P ++ AGF + LL DKP
Sbjct: 159 -DGRVVGFHT-----------AWEPSR----PFPVDMAGFAVALPLLL----DKPN-AQF 197
Query: 382 XXXXXXXXXIESPLSLLKDQSMVEP-LGNCGRQVIVWWLRVE 422
S LS L D +EP NC R V+VW R E
Sbjct: 198 DSTAPRGHLESSLLSHLVDPKDLEPRAANCTR-VLVWHTRTE 238
>pdb|3CU0|A Chain A, Human Beta 1,3-Glucuronyltransferase I (Glcat-I) In
Complex With Udp And Gal-Gal(6-So4)-Xyl(2-Po4)-O-Ser
pdb|3CU0|B Chain B, Human Beta 1,3-Glucuronyltransferase I (Glcat-I) In
Complex With Udp And Gal-Gal(6-So4)-Xyl(2-Po4)-O-Ser
Length = 281
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 114/282 (40%), Gaps = 65/282 (23%)
Query: 161 TLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVE-AGGVTNETASLIAKSKLRTIH 219
T+ VVTPTY R Q L + +L LVP L W++VE A G T + L+A S L H
Sbjct: 22 TIYVVTPTYARLVQKAELVRLSQTLSLVPR-LHWLLVEDAEGPTPLVSGLLAASGLLFTH 80
Query: 220 VGV----DQKM-PASWGGRHQLEAKMRLRALRIVR-------EEK------LDGIVMFAD 261
+ V Q++ G H + R +AL +R EK G+V FAD
Sbjct: 81 LVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFAD 140
Query: 262 DSNMHSMELFDEIQNVKWFGAVSVGILALAGNQDESSSVIMEKEEGGENTAMPVQGPACN 321
D N +S ELF+E+ +W VSV + L G + +GP
Sbjct: 141 DDNTYSRELFEEM---RWTRGVSVWPVGLVG-------------------GLRFEGPQVQ 178
Query: 322 SSNNLVGWHTFNSLPYARKSATYIDDRATVLPRKLEWAGFVLNSRLLWKEAKDKPEWVNX 381
+VG+HT + R P ++ AGF + LL DKP
Sbjct: 179 -DGRVVGFHT-----------AWEPSR----PFPVDMAGFAVALPLLL----DKPN-AQF 217
Query: 382 XXXXXXXXXIESPLSLLKDQSMVEP-LGNCGRQVIVWWLRVE 422
S LS L D +EP NC R V+VW R E
Sbjct: 218 DSTAPRGHLESSLLSHLVDPKDLEPRAANCTR-VLVWHTRTE 258
>pdb|2D0J|A Chain A, Crystal Structure Of Human Glcat-S Apo Form
pdb|2D0J|B Chain B, Crystal Structure Of Human Glcat-S Apo Form
pdb|2D0J|C Chain C, Crystal Structure Of Human Glcat-S Apo Form
pdb|2D0J|D Chain D, Crystal Structure Of Human Glcat-S Apo Form
Length = 246
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 103/267 (38%), Gaps = 48/267 (17%)
Query: 161 TLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGGVTNETAS-LIAKSKLRTIH 219
T+ +TPTY R Q LT + ++ V L WI+VE +E S +A++ L + H
Sbjct: 4 TIYAITPTYSRPVQKAELTRLANTFRQVA-QLHWILVEDAAARSELVSRFLARAGLPSTH 62
Query: 220 VGV----DQKMPASWGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275
+ V K P Q A + R + G++ FADD N +S+ELF E++
Sbjct: 63 LHVPTPRRYKRPGLPRATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMR 122
Query: 276 NVKWFGAVSVGILALAGNQDESSSVIMEKEEGGENTAMPVQGPACNSSNNLVGWHTFNSL 335
+ VG++ GG P+ + +VGW+T
Sbjct: 123 TTRKVSVWPVGLV------------------GGRRYERPLV-----ENGKVVGWYT---- 155
Query: 336 PYARKSATYIDDRATVLPRKLEWAGFVLNSRLLWKEAKDKPEWVNXXXXXXXXXXIESPL 395
+ DR P ++ AGF ++ +++ P+ V L
Sbjct: 156 -------GWRADR----PFAIDMAGFAVSLQVIL----SNPKAVFKRRGSQPGMQESDFL 200
Query: 396 SLLKDQSMVEPLGNCGRQVIVWWLRVE 422
+ +EP N +V+VW R E
Sbjct: 201 KQITTVEELEPKANNCTKVLVWHTRTE 227
>pdb|2R9Y|A Chain A, Structure Of Antiplasmin
Length = 430
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 150 QRAHFGFKNPRTLIVVTPTY 169
Q AHF FKN + +VV PTY
Sbjct: 225 QVAHFPFKNNMSFVVVMPTY 244
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 134 TEVMKAHKIIERVQREQRAHFGFKNPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLV 193
TE+MK ++++++ R++ F + R V T +T + LH GV+H L P +++
Sbjct: 95 TELMKGGELLDKILRQK-----FFSEREASAVLFTITKTVEYLHAQGVVHR-DLKPSNIL 148
Query: 194 WI 195
++
Sbjct: 149 YV 150
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 254 DGIVMFADDSNMH----SMELFDEIQNVKWFGAVSV 285
D ++ A+D M+ SM+LFD I N KWF S+
Sbjct: 228 DYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSI 263
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 254 DGIVMFADDSNMH----SMELFDEIQNVKWFGAVSV 285
D ++ A+D M+ SM+LFD I N KWF S+
Sbjct: 205 DYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSI 240
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 254 DGIVMFADDSNMH----SMELFDEIQNVKWFGAVSV 285
D ++ A+D M+ SM+LFD I N KWF S+
Sbjct: 198 DYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSI 233
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 184 SLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAKMRLR 243
S LV L WI E G+ +A R + +P +GGR LEA LR
Sbjct: 272 SNFLVGNALYWI--ERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLR 329
Query: 244 ALRIVREEKLDGIVMFADDS 263
+ E++ G V A++S
Sbjct: 330 NTNRILGEQVSGAVTMAEES 349
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 254 DGIVMFADDSNMH----SMELFDEIQNVKWFGAVSV 285
D ++ A+D M+ SM+LFD I N KWF S+
Sbjct: 205 DYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSI 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,877,094
Number of Sequences: 62578
Number of extensions: 386091
Number of successful extensions: 762
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 14
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)