Query 013985
Match_columns 432
No_of_seqs 147 out of 281
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 00:43:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1476 Beta-1,3-glucuronyltra 100.0 1.3E-91 2.8E-96 690.0 18.7 266 111-428 43-316 (330)
2 cd00218 GlcAT-I Beta1,3-glucur 100.0 2.2E-86 4.7E-91 630.8 19.9 219 160-423 1-223 (223)
3 PLN02458 transferase, transfer 100.0 2E-80 4.3E-85 614.6 24.8 231 153-425 105-342 (346)
4 PF03360 Glyco_transf_43: Glyc 100.0 1.1E-73 2.5E-78 539.3 9.6 198 181-423 1-207 (207)
5 PF00535 Glycos_transf_2: Glyc 97.7 5.5E-05 1.2E-09 63.2 5.5 93 164-273 2-98 (169)
6 cd04184 GT2_RfbC_Mx_like Myxoc 96.6 0.015 3.3E-07 51.6 9.6 100 160-275 1-105 (202)
7 PLN02726 dolichyl-phosphate be 95.9 0.095 2.1E-06 49.2 11.2 105 157-275 6-115 (243)
8 cd04185 GT_2_like_b Subfamily 95.8 0.061 1.3E-06 48.1 9.2 100 164-277 1-103 (202)
9 cd06421 CESA_CelA_like CESA_Ce 95.8 0.052 1.1E-06 49.2 8.7 101 160-275 1-106 (234)
10 cd02522 GT_2_like_a GT_2_like_ 95.8 0.044 9.4E-07 49.4 8.1 92 162-274 1-93 (221)
11 PRK10018 putative glycosyl tra 95.7 0.13 2.9E-06 50.8 11.7 99 158-273 3-105 (279)
12 cd04195 GT2_AmsE_like GT2_AmsE 95.3 0.066 1.4E-06 47.6 7.2 96 164-273 2-100 (201)
13 cd06423 CESA_like CESA_like is 95.3 0.11 2.4E-06 43.0 8.1 94 164-274 1-99 (180)
14 cd02511 Beta4Glucosyltransfera 95.2 0.064 1.4E-06 50.1 7.2 94 162-277 2-95 (229)
15 cd06433 GT_2_WfgS_like WfgS an 95.1 0.099 2.1E-06 45.5 7.8 92 164-273 2-95 (202)
16 cd04186 GT_2_like_c Subfamily 95.0 0.12 2.6E-06 43.7 7.8 96 164-276 1-97 (166)
17 PRK10063 putative glycosyl tra 94.9 0.19 4E-06 48.5 9.7 98 160-272 1-101 (248)
18 cd04192 GT_2_like_e Subfamily 94.7 0.28 6.1E-06 44.0 9.8 98 164-276 1-105 (229)
19 COG0463 WcaA Glycosyltransfera 94.7 0.21 4.4E-06 40.4 8.0 98 159-273 2-102 (291)
20 cd04196 GT_2_like_d Subfamily 94.6 0.18 4E-06 44.7 8.2 98 164-277 2-103 (214)
21 cd06435 CESA_NdvC_like NdvC_li 94.5 0.26 5.6E-06 45.2 9.3 99 164-274 2-105 (236)
22 cd04187 DPM1_like_bac Bacteria 94.3 0.29 6.2E-06 43.1 8.7 100 164-276 1-103 (181)
23 cd06436 GlcNAc-1-P_transferase 93.9 0.31 6.8E-06 44.1 8.4 101 164-276 1-112 (191)
24 cd00761 Glyco_tranf_GTA_type G 93.8 0.51 1.1E-05 38.0 8.7 95 164-274 1-98 (156)
25 cd02526 GT2_RfbF_like RfbF is 93.8 0.24 5.3E-06 45.2 7.5 94 164-274 1-96 (237)
26 cd06442 DPM1_like DPM1_like re 93.8 0.47 1E-05 42.8 9.3 95 164-276 1-101 (224)
27 cd06439 CESA_like_1 CESA_like_ 93.5 0.73 1.6E-05 42.7 10.3 102 154-274 23-130 (251)
28 PRK10073 putative glycosyl tra 93.5 0.72 1.6E-05 46.4 11.0 101 158-275 4-107 (328)
29 cd06913 beta3GnTL1_like Beta 1 93.5 0.42 9E-06 43.7 8.5 96 164-273 1-104 (219)
30 cd06434 GT2_HAS Hyaluronan syn 93.5 0.77 1.7E-05 41.8 10.1 95 162-275 2-99 (235)
31 TIGR03469 HonB hopene-associat 93.4 0.35 7.6E-06 49.4 8.6 109 157-274 37-154 (384)
32 cd02525 Succinoglycan_BP_ExoA 93.4 0.51 1.1E-05 42.9 8.9 97 162-275 2-103 (249)
33 cd06438 EpsO_like EpsO protein 92.8 1.3 2.7E-05 39.5 10.4 100 164-275 1-103 (183)
34 cd06427 CESA_like_2 CESA_like_ 92.8 0.97 2.1E-05 42.2 9.9 101 160-274 1-105 (241)
35 cd06437 CESA_CaSu_A2 Cellulose 91.4 1.8 3.9E-05 39.9 9.8 102 160-276 1-110 (232)
36 TIGR01556 rhamnosyltran L-rham 90.8 1.1 2.3E-05 43.0 8.0 91 168-274 2-94 (281)
37 TIGR03111 glyc2_xrt_Gpos1 puta 90.6 2.1 4.6E-05 44.7 10.6 101 156-275 45-153 (439)
38 PF13641 Glyco_tranf_2_3: Glyc 90.6 0.33 7.2E-06 44.1 4.2 101 160-275 1-108 (228)
39 PRK10714 undecaprenyl phosphat 90.6 3.5 7.5E-05 41.6 11.8 104 158-274 4-111 (325)
40 PRK13915 putative glucosyl-3-p 90.4 2.2 4.8E-05 42.8 10.2 107 158-274 29-137 (306)
41 cd06420 GT2_Chondriotin_Pol_N 90.0 2.8 6.1E-05 36.5 9.4 98 164-276 1-102 (182)
42 cd04188 DPG_synthase DPG_synth 89.9 2.5 5.3E-05 38.4 9.3 100 164-276 1-105 (211)
43 cd04179 DPM_DPG-synthase_like 89.9 1.8 4E-05 37.7 8.1 96 164-276 1-102 (185)
44 PRK11204 N-glycosyltransferase 88.8 4.7 0.0001 41.1 11.3 100 158-275 52-156 (420)
45 PTZ00260 dolichyl-phosphate be 86.4 9.3 0.0002 38.7 11.7 105 157-274 67-183 (333)
46 cd02510 pp-GalNAc-T pp-GalNAc- 84.9 7.6 0.00016 37.7 9.9 96 164-274 2-104 (299)
47 cd02520 Glucosylceramide_synth 83.6 3 6.5E-05 37.6 6.1 104 160-276 1-109 (196)
48 PF10111 Glyco_tranf_2_2: Glyc 82.7 8.4 0.00018 37.7 9.2 99 164-276 2-111 (281)
49 TIGR03030 CelA cellulose synth 74.2 24 0.00051 39.7 10.6 101 157-273 128-248 (713)
50 PRK14583 hmsR N-glycosyltransf 70.7 33 0.00072 35.8 10.2 97 158-274 73-176 (444)
51 COG5494 Predicted thioredoxin/ 60.4 9.6 0.00021 37.9 3.6 40 117-156 210-257 (265)
52 COG1216 Predicted glycosyltran 60.3 34 0.00074 33.7 7.5 102 159-276 2-107 (305)
53 PRK05799 coproporphyrinogen II 59.2 1.2E+02 0.0026 31.1 11.4 110 142-254 35-150 (374)
54 PRK11498 bcsA cellulose syntha 45.3 1.6E+02 0.0035 34.5 10.7 99 158-273 258-359 (852)
55 PF05194 UreE_C: UreE urease a 43.1 70 0.0015 26.5 5.6 53 160-222 2-60 (87)
56 PF14263 DUF4354: Domain of un 40.1 14 0.0003 33.6 1.1 18 253-270 100-118 (124)
57 PRK00523 hypothetical protein; 39.9 33 0.00072 28.6 3.1 26 36-61 3-28 (72)
58 PRK05628 coproporphyrinogen II 39.6 1.5E+02 0.0032 30.5 8.5 110 142-254 38-159 (375)
59 cd00571 UreE UreE urease acces 39.4 1.1E+02 0.0024 27.6 6.7 55 158-222 74-134 (136)
60 TIGR03472 HpnI hopanoid biosyn 39.4 2.7E+02 0.0058 28.4 10.3 107 156-275 37-148 (373)
61 TIGR02326 transamin_PhnW 2-ami 38.3 3E+02 0.0066 27.3 10.3 88 124-222 22-109 (363)
62 PRK01844 hypothetical protein; 35.5 40 0.00086 28.2 2.9 25 37-61 3-27 (72)
63 PRK10187 trehalose-6-phosphate 33.9 42 0.00092 33.0 3.4 35 243-279 177-214 (266)
64 PF06858 NOG1: Nucleolar GTP-b 33.7 26 0.00057 28.0 1.6 34 240-277 5-44 (58)
65 PF14773 VIGSSK: Helicase-asso 31.5 32 0.00069 27.9 1.7 21 202-222 24-44 (61)
66 PF15050 SCIMP: SCIMP protein 31.3 40 0.00086 30.9 2.5 18 39-56 8-25 (133)
67 PRK08446 coproporphyrinogen II 30.4 2.9E+02 0.0062 28.3 8.8 94 157-254 50-149 (350)
68 COG3763 Uncharacterized protei 30.4 54 0.0012 27.3 2.9 25 38-62 4-28 (71)
69 PRK08599 coproporphyrinogen II 28.1 6.7E+02 0.015 25.7 11.2 98 156-255 49-152 (377)
70 TIGR02026 BchE magnesium-proto 26.3 4.1E+02 0.0088 28.7 9.5 89 160-254 241-338 (497)
71 cd02514 GT13_GLCNAC-TI GT13_GL 26.1 4.6E+02 0.0099 27.4 9.4 109 164-277 4-121 (334)
72 TIGR03471 HpnJ hopanoid biosyn 26.0 4.9E+02 0.011 27.6 9.9 91 158-254 245-338 (472)
73 PF13365 Trypsin_2: Trypsin-li 22.8 46 0.001 26.9 1.3 13 316-328 107-119 (120)
74 KOG2978 Dolichol-phosphate man 22.7 5.9E+02 0.013 25.5 8.8 101 164-276 7-111 (238)
75 TIGR00685 T6PP trehalose-phosp 22.0 5.6E+02 0.012 24.5 8.7 32 243-276 170-204 (244)
76 PRK10173 glucose-1-phosphatase 21.4 1.6E+02 0.0034 31.4 5.2 61 116-176 35-121 (413)
77 PF05116 S6PP: Sucrose-6F-phos 21.4 2.2E+02 0.0048 27.7 5.8 70 191-271 119-197 (247)
78 PF05679 CHGN: Chondroitin N-a 21.2 5.7E+02 0.012 27.9 9.4 118 157-288 244-379 (499)
79 KOG0348 ATP-dependent RNA heli 21.1 78 0.0017 35.7 2.9 66 142-214 195-264 (708)
80 PF00583 Acetyltransf_1: Acety 21.0 1.5E+02 0.0032 22.3 3.7 40 235-274 41-80 (83)
81 PRK07094 biotin synthase; Prov 20.6 8.5E+02 0.018 24.2 10.0 76 176-253 103-179 (323)
82 PRK05904 coproporphyrinogen II 20.5 5.5E+02 0.012 26.6 8.7 141 141-288 40-195 (353)
83 PRK08208 coproporphyrinogen II 20.3 4.3E+02 0.0094 27.9 8.1 95 159-254 92-192 (430)
No 1
>KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-91 Score=690.04 Aligned_cols=266 Identities=39% Similarity=0.598 Sum_probs=236.2
Q ss_pred CCCCceeecccccccCCCCCCChHHhhHHHHHHHHHHHHHHhcCCCCCCcEEEEEccCCccchhhHHHHhhhhhccCCCC
Q 013985 111 NSNSRVVVGRHGIRIRPWPHPNPTEVMKAHKIIERVQREQRAHFGFKNPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVPY 190 (432)
Q Consensus 111 ~~~s~v~vgrh~i~~rpwphp~p~e~~~ah~i~~rvQ~eq~~~~g~~~~~~IivVTPTy~R~~Q~a~LTRLa~TL~lVp~ 190 (432)
..++++.+|||||++|+|+|+++.++++++.+..+.|.|++.+ .|+||||||||.|++|++|||||||||+|||
T Consensus 43 ~~~~~~~~~~~gir~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-----~~~iivVTPTY~R~~q~~~LtRlanTL~~V~- 116 (330)
T KOG1476|consen 43 TYSSPRVVGRHGIRIRPWATAPAIAVEKVAETRSRTQKEPEMQ-----LPTIIVVTPTYVRPVQAAELTRLANTLRLVP- 116 (330)
T ss_pred cccceeeeccccccccccCCCchhhhhhhccccccCCcccccC-----CccEEEEcccccchhHHHHHHHHHHHHhhcC-
Confidence 6688999999999999999999999999999999999998764 9999999999999999999999999999999
Q ss_pred CeEEEEEeCCC-CCHHHHHHHhhCCCceeeeecCCCCCCCcCCCchhhHHHHHHHHHHHH-----hccCCeEEEEecCCC
Q 013985 191 DLVWIVVEAGG-VTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAKMRLRALRIVR-----EEKLDGIVMFADDSN 264 (432)
Q Consensus 191 ~L~WIVVEd~~-~t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r~~~~~~qRN~AL~~IR-----~~~~~GVVyFADDDN 264 (432)
|||||||||++ .+++|+.+|++|||+|+||+++++++ ++.+++. +|||.||+||| +|+++||||||||||
T Consensus 117 nLhWIVVEd~~~~~p~v~~~L~rtgl~ythl~~~t~~~--~~~~rg~--~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN 192 (330)
T KOG1476|consen 117 NLHWIVVEDGEGTTPEVSGILRRTGLPYTHLVHKTPMG--YKARRGW--EQRNMALRWIRSRILRHHKLEGVVYFADDDN 192 (330)
T ss_pred CeeEEEEecCCCCCHHHHHHHHHcCCceEEEeccCCCC--Cccccch--hHHHHHHHHHHHhcccccccceEEEEccCCc
Confidence 99999999995 79999999999999999999997765 3444333 69999999999 679999999999999
Q ss_pred ccchhhhhhhcceeeeeEEEeeEEeecCCCccchhhhhhhhcCCCCCccccccceecCCCCeEEEEecCCCccccccccc
Q 013985 265 MHSMELFDEIQNVKWFGAVSVGILALAGNQDESSSVIMEKEEGGENTAMPVQGPACNSSNNLVGWHTFNSLPYARKSATY 344 (432)
Q Consensus 265 tYdl~LFdemR~tk~vgvWPVGlv~~~Gg~~~~~~~~~~~~~~~~~~~v~vEGP~cn~sgkVvGWht~~~~p~~~~sa~~ 344 (432)
+||+|||+|||+||+||+||||++ || +.||||+|+ +|||+|||+.|.
T Consensus 193 ~YdleLF~eiR~v~~~gvWpVg~v---gg-------------------~~vE~P~v~-~~kvvg~~~~w~---------- 239 (330)
T KOG1476|consen 193 TYDLELFEEIRNVKKFGVWPVGLV---GG-------------------ARVEGPVVN-NGKVVGWHTRWE---------- 239 (330)
T ss_pred chhHHHHHHHhccceeeeEeeeec---CC-------------------eeeecceec-cCeeEEEEeccc----------
Confidence 999999999999999999999998 65 479999999 789999999873
Q ss_pred cccccccCCcccccceeeeeeccccccccCCCcccccccccCCCccccc--cccccCCCCcccccCCCCCEEEEEecccC
Q 013985 345 IDDRATVLPRKLEWAGFVLNSRLLWKEAKDKPEWVNDLDLLDGLEDIES--PLSLLKDQSMVEPLGNCGRQVIVWWLRVE 422 (432)
Q Consensus 345 ~~drap~rpf~IDMAGFA~Ns~LLw~~~~~kp~~~~d~~~~~~~~~iEs--~L~lL~d~~~lEPla~cc~~VLVWHtRtE 422 (432)
|.|||+|||||||||+++||+++.+ |.++....++ ++.|+ +.+|..|.++|||+|+||++|||||||||
T Consensus 240 -----~~r~f~vdmaGFAvNl~lll~~~~a---~f~~~~~~~~-G~~E~~~l~~l~~d~~~iEp~~~~c~kILvWhtrte 310 (330)
T KOG1476|consen 240 -----PERPFAVDMAGFAVNLKLLLDPSNA---VFKPLCPRGE-GYQETCLLEQLGLDLSDIEPLAYECTKILVWHTRTE 310 (330)
T ss_pred -----cCCCCccchhhheehhhhhccCccc---cccccCcCCC-CCcchhHHHHhcCCHHHccccccccceEEEEEeccc
Confidence 8899999999999999999998643 4444332332 34443 45677999999999999999999999999
Q ss_pred CCCCCC
Q 013985 423 ARSDSK 428 (432)
Q Consensus 423 ~~~~sk 428 (432)
++.+.+
T Consensus 311 ~~~~~~ 316 (330)
T KOG1476|consen 311 KPADKR 316 (330)
T ss_pred Cccccc
Confidence 997533
No 2
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=100.00 E-value=2.2e-86 Score=630.82 Aligned_cols=219 Identities=38% Similarity=0.637 Sum_probs=191.2
Q ss_pred cEEEEEccCCccchhhHHHHhhhhhccCCCCCeEEEEEeCCC-CCHHHHHHHhhCCCceeeeecCCCCCCCcCCCchhhH
Q 013985 160 RTLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGG-VTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEA 238 (432)
Q Consensus 160 ~~IivVTPTy~R~~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~-~t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r~~~~~ 238 (432)
|+||||||||+|++|+|||||||||||||| |||||||||++ +|++|+++|++|||+|+||+++++....|..+++ .
T Consensus 1 p~i~vVTPTy~R~~Q~~~LtRLa~TL~lVp-~l~WIVVEd~~~~t~~va~lL~~sgl~y~HL~~~~~~~~~~~~~rg--~ 77 (223)
T cd00218 1 PTIYVVTPTYARPVQKAELTRLAHTLRLVP-PLHWIVVEDSEEKTPLVAELLRRSGLMYTHLNAKTPSDPTWLKPRG--V 77 (223)
T ss_pred CeEEEECCCCccchhhHHHHHHHHHHhcCC-ceEEEEEeCCCCCCHHHHHHHHHcCCceEEeccCCCCCcccCCccc--H
Confidence 789999999999999999999999999999 99999999998 8999999999999999999998663223444443 3
Q ss_pred HHHHHHHHHHHhc---cCCeEEEEecCCCccchhhhhhhcceeeeeEEEeeEEeecCCCccchhhhhhhhcCCCCCcccc
Q 013985 239 KMRLRALRIVREE---KLDGIVMFADDSNMHSMELFDEIQNVKWFGAVSVGILALAGNQDESSSVIMEKEEGGENTAMPV 315 (432)
Q Consensus 239 ~qRN~AL~~IR~~---~~~GVVyFADDDNtYdl~LFdemR~tk~vgvWPVGlv~~~Gg~~~~~~~~~~~~~~~~~~~v~v 315 (432)
+|||.||+|||+| +++||||||||||+||+|||||||+||+||+||||++ || +.|
T Consensus 78 ~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR~i~~vg~WPVglv---g~-------------------~~v 135 (223)
T cd00218 78 EQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMRKIKRVGVWPVGLV---GG-------------------LRV 135 (223)
T ss_pred HHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHhccCeeeEEEeeee---cC-------------------cee
Confidence 6999999999999 9999999999999999999999999999999999999 54 379
Q ss_pred ccceecCCCCeEEEEecCCCccccccccccccccccCCcccccceeeeeeccccccccCCCcccccccccCCCccccccc
Q 013985 316 QGPACNSSNNLVGWHTFNSLPYARKSATYIDDRATVLPRKLEWAGFVLNSRLLWKEAKDKPEWVNDLDLLDGLEDIESPL 395 (432)
Q Consensus 316 EGP~cn~sgkVvGWht~~~~p~~~~sa~~~~drap~rpf~IDMAGFA~Ns~LLw~~~~~kp~~~~d~~~~~~~~~iEs~L 395 (432)
|||+|+ +|||+|||+.|. |.|||||||||||||+++||+++++.+ +.+..++.++.+++.
T Consensus 136 egP~c~-~gkV~gw~~~w~---------------~~R~f~idmAGFA~n~~ll~~~~~~~~----~~~~~~g~~es~fl~ 195 (223)
T cd00218 136 EGPVCE-NGKVVGWHTAWK---------------PERPFPIDMAGFAFNSKLLWDPPRAVF----PYSAKRGYQESSFLE 195 (223)
T ss_pred eccEee-CCeEeEEecCCC---------------CCCCCcceeeeEEEehhhhccCccccC----CCCCCCcchhHHhHH
Confidence 999999 789999999884 679999999999999999999865443 322222212333345
Q ss_pred cccCCCCcccccCCCCCEEEEEecccCC
Q 013985 396 SLLKDQSMVEPLGNCGRQVIVWWLRVEA 423 (432)
Q Consensus 396 ~lL~d~~~lEPla~cc~~VLVWHtRtE~ 423 (432)
+|+.|++++||+|+||++|||||||||+
T Consensus 196 ~L~~~~~~~Epl~~~c~~VlvWhtrte~ 223 (223)
T cd00218 196 QLVLDRKELEPLANNCSKVLVWHTRTEK 223 (223)
T ss_pred HHcccHHhcccccCCCCEEEEEeeecCC
Confidence 7788899999999999999999999996
No 3
>PLN02458 transferase, transferring glycosyl groups
Probab=100.00 E-value=2e-80 Score=614.57 Aligned_cols=231 Identities=26% Similarity=0.483 Sum_probs=199.7
Q ss_pred cCCCCCCcEEEEEccCCc-cchhhHHHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhCCCceeeeecCCCCCCCcC
Q 013985 153 HFGFKNPRTLIVVTPTYV-RTFQTLHLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWG 231 (432)
Q Consensus 153 ~~g~~~~~~IivVTPTy~-R~~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~~t~~va~lL~~sgl~y~HL~~~~~~p~~~~ 231 (432)
..+++++++||||||||. |++|++|||||||||||||+|||||||||++.|++|++||++|||+|+||+++++++.
T Consensus 105 ~~~~~~~rlIivVTPTY~rR~~Q~a~LTRLahTL~lVp~pL~WIVVEd~~~t~~va~lLrrsGl~y~HL~~k~~~~~--- 181 (346)
T PLN02458 105 EPKLAPRRLVIIVTPISTKDRYQGVLLRRLANTLRLVPPPLLWIVVEGQSDSEEVSEMLRKTGIMYRHLVFKENFTD--- 181 (346)
T ss_pred ccCCCCCceEEEECCCCCCcchhHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHHHHcCCceEEeccCCCCCC---
Confidence 456789999999999998 7999999999999999999899999999999999999999999999999999987753
Q ss_pred CCchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhcceeeeeEEEeeEEeecCCCccchhhhhhhhcCCCCC
Q 013985 232 GRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQNVKWFGAVSVGILALAGNQDESSSVIMEKEEGGENT 311 (432)
Q Consensus 232 ~r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR~tk~vgvWPVGlv~~~Gg~~~~~~~~~~~~~~~~~~ 311 (432)
......+|||+||+|||+|+++||||||||||+||+|||||||+||+||+||||++++++ .
T Consensus 182 -~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEmR~ik~vG~WPVGlvg~~~------------------~ 242 (346)
T PLN02458 182 -PEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEIRDIEVFGTWPMALLSANR------------------N 242 (346)
T ss_pred -ccchhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHHhcCceeeecceEEeeccc------------------c
Confidence 223345799999999999999999999999999999999999999999999999996431 1
Q ss_pred ccccccceecCCCCeEEEEecCCCccccccccccccccccCCcccccceeeeeeccccccc-cCCCcccccccccCCCcc
Q 013985 312 AMPVQGPACNSSNNLVGWHTFNSLPYARKSATYIDDRATVLPRKLEWAGFVLNSRLLWKEA-KDKPEWVNDLDLLDGLED 390 (432)
Q Consensus 312 ~v~vEGP~cn~sgkVvGWht~~~~p~~~~sa~~~~drap~rpf~IDMAGFA~Ns~LLw~~~-~~kp~~~~d~~~~~~~~~ 390 (432)
++.||||+|++ |||+|||+.|.. +.+.|+|||||||||||+++|||+. +.+|.|.++ +.
T Consensus 243 ~~~vEGPvc~~-gkVvGWht~w~~------------~~~~RrfpIDMAGFAfNs~lLwdP~rw~Rp~~~~~-------~~ 302 (346)
T PLN02458 243 KVIIEGPVCDS-SQVIGWHLKKMN------------NETETRPPIHISSFAFNSSILWDPERWGRPSSVQG-------TS 302 (346)
T ss_pred cceeECceecC-CeEeEEeccccc------------cCCCCCCCcceeeeeeehhhhcChhhhCCCCCCCc-------cc
Confidence 37899999995 799999998731 1267899999999999999999995 456766553 34
Q ss_pred ccc--cc-cc-cCCCCcccccC-CCCCEEEEEecccCCCC
Q 013985 391 IES--PL-SL-LKDQSMVEPLG-NCGRQVIVWWLRVEARS 425 (432)
Q Consensus 391 iEs--~L-~l-L~d~~~lEPla-~cc~~VLVWHtRtE~~~ 425 (432)
+|| ++ ++ ++|+.++|+++ +||++|||||++++.+.
T Consensus 303 qeS~~Fv~ql~~~de~q~egipa~~CskVmvWhl~~~~~~ 342 (346)
T PLN02458 303 QNSIKFVKQVALEDETKLKGIPPEDCSKIMLWRLNFPTRT 342 (346)
T ss_pred hHHHHHHHHHhhccccccccCCcCCCCEEEEEEeccCCcc
Confidence 444 33 44 68999999995 78999999999998764
No 4
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=100.00 E-value=1.1e-73 Score=539.30 Aligned_cols=198 Identities=38% Similarity=0.624 Sum_probs=141.4
Q ss_pred hhhhccCCCCCeEEEEEeCCCC-CHHHHHHHhhCCCceeeeecCCCCCCCcCCCc---hhhHHHHHHHHHHHH---hccC
Q 013985 181 VMHSLMLVPYDLVWIVVEAGGV-TNETASLIAKSKLRTIHVGVDQKMPASWGGRH---QLEAKMRLRALRIVR---EEKL 253 (432)
Q Consensus 181 La~TL~lVp~~L~WIVVEd~~~-t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r~---~~~~~qRN~AL~~IR---~~~~ 253 (432)
||||||||| |||||||||++. +++|+++|++|||+|+||++++ |..++++. ..+..|||.||+||| ++++
T Consensus 1 La~TL~~V~-~l~WIVVEd~~~~~~~v~~lL~~sgl~y~hL~~~~--p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~ 77 (207)
T PF03360_consen 1 LAHTLRHVP-PLHWIVVEDSEETTPLVARLLRRSGLPYTHLNVKT--PSNFKDPRWIKPRGVHQRNAALRWIRNNANHRL 77 (207)
T ss_dssp HHHHHTTSS-SEEEEEEESSSS--HHHHHHHHHHTSEEEEEE------HHHH-------TSHHHHHHHHHHHHSTTTSSS
T ss_pred CchhhhcCC-ceEEEEEeCCCCCCHHHHHHHHHcCCceeEEecCC--ccccccccccccccHHHHHHHHHHHHhcccCCC
Confidence 799999999 999999999986 6679999999999999999974 43332111 123479999999999 8899
Q ss_pred CeEEEEecCCCccchhhhhhhcceeeeeEEEeeEEeecCCCccchhhhhhhhcCCCCCccccccceecCCCCeEEEEecC
Q 013985 254 DGIVMFADDSNMHSMELFDEIQNVKWFGAVSVGILALAGNQDESSSVIMEKEEGGENTAMPVQGPACNSSNNLVGWHTFN 333 (432)
Q Consensus 254 ~GVVyFADDDNtYdl~LFdemR~tk~vgvWPVGlv~~~Gg~~~~~~~~~~~~~~~~~~~v~vEGP~cn~sgkVvGWht~~ 333 (432)
+||||||||||+||+|||||||+||+||+||||++ || +.+|||+||.+ +|+|||+.|
T Consensus 78 ~GVVyFaDDdNtYdl~LF~emR~~k~vgvWPVG~v---g~-------------------~~~EgP~~~~~-~Vvgw~~~~ 134 (207)
T PF03360_consen 78 DGVVYFADDDNTYDLRLFDEMRKTKRVGVWPVGLV---GG-------------------LRVEGPVCNNG-KVVGWHTSW 134 (207)
T ss_dssp -EEEEE--TTSEE-HHHHHHHCT-SSEEE--EEEE---TT-------------------EEEEEEEEETT-EEEEEE-SS
T ss_pred CcEEEECCCCCeeeHHHHHHHHhhhcccceeecee---cc-------------------ceeeccEEeCC-EEEEEEccc
Confidence 99999999999999999999999999999999999 55 47999999965 999999987
Q ss_pred CCccccccccccccccccCCcccccceeeeeeccccccccCCCcccccccccCCCccccc-cccc-cCCCCcccccCCCC
Q 013985 334 SLPYARKSATYIDDRATVLPRKLEWAGFVLNSRLLWKEAKDKPEWVNDLDLLDGLEDIES-PLSL-LKDQSMVEPLGNCG 411 (432)
Q Consensus 334 ~~p~~~~sa~~~~drap~rpf~IDMAGFA~Ns~LLw~~~~~kp~~~~d~~~~~~~~~iEs-~L~l-L~d~~~lEPla~cc 411 (432)
. |.|||||||||||||++|||+++++.+. .+...+.++.|+ +|+. ..|+++|||+|+||
T Consensus 135 ~---------------~~R~fpiDmAGFAvn~~ll~~~~~~~~~----~~~~~~~G~~Es~fL~~l~~~~~~lEp~a~~c 195 (207)
T PF03360_consen 135 K---------------PDRPFPIDMAGFAVNSRLLWDRPEAIFD----YSAPRGEGYQESSFLSQLVLDREDLEPLADNC 195 (207)
T ss_dssp S---------------TTSTT---GGGEEEEHHHHHHSTT--------TTSSTT-TGHHHHHHHTT---GGGEEE-HHHH
T ss_pred C---------------CCCCccccceeeeeehHHHhcCcccccc----ccCCCCCCcchhHHHHHhccChhhcccccCCC
Confidence 3 7799999999999999999997665443 333332246666 6654 45999999999999
Q ss_pred CEEEEEecccCC
Q 013985 412 RQVIVWWLRVEA 423 (432)
Q Consensus 412 ~~VLVWHtRtE~ 423 (432)
++||||||||||
T Consensus 196 ~~VlVWHtrtek 207 (207)
T PF03360_consen 196 SKVLVWHTRTEK 207 (207)
T ss_dssp TS--EE---B--
T ss_pred CEEEEeeeeccC
Confidence 999999999997
No 5
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=97.73 E-value=5.5e-05 Score=63.19 Aligned_cols=93 Identities=26% Similarity=0.402 Sum_probs=59.3
Q ss_pred EEccCCccchhhHHHHhhhhhccCC-CCCeEEEEEeCCCCCHHHHHHHhhC---CCceeeeecCCCCCCCcCCCchhhHH
Q 013985 164 VVTPTYVRTFQTLHLTGVMHSLMLV-PYDLVWIVVEAGGVTNETASLIAKS---KLRTIHVGVDQKMPASWGGRHQLEAK 239 (432)
Q Consensus 164 vVTPTy~R~~Q~a~LTRLa~TL~lV-p~~L~WIVVEd~~~t~~va~lL~~s---gl~y~HL~~~~~~p~~~~~r~~~~~~ 239 (432)
||+|||.+.. .|.++.++|+.- ..+..+|||+|++ ++.+.+++++. +..++.+..+.+. +. ..
T Consensus 2 vvip~~n~~~---~l~~~l~sl~~q~~~~~eiivvdd~s-~d~~~~~~~~~~~~~~~i~~i~~~~n~--------g~-~~ 68 (169)
T PF00535_consen 2 VVIPTYNEAE---YLERTLESLLKQTDPDFEIIVVDDGS-TDETEEILEEYAESDPNIRYIRNPENL--------GF-SA 68 (169)
T ss_dssp EEEEESS-TT---THHHHHHHHHHHSGCEEEEEEEECS--SSSHHHHHHHHHCCSTTEEEEEHCCCS--------HH-HH
T ss_pred EEEEeeCCHH---HHHHHHHHHhhccCCCEEEEEecccc-ccccccccccccccccccccccccccc--------cc-cc
Confidence 7899999933 445555555444 2379999999998 44455555553 5566666544322 21 24
Q ss_pred HHHHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 013985 240 MRLRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (432)
Q Consensus 240 qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFde 273 (432)
++|.|++..+.. .|.|.|||..+....+++
T Consensus 69 ~~n~~~~~a~~~----~i~~ld~D~~~~~~~l~~ 98 (169)
T PF00535_consen 69 ARNRGIKHAKGE----YILFLDDDDIISPDWLEE 98 (169)
T ss_dssp HHHHHHHH--SS----EEEEEETTEEE-TTHHHH
T ss_pred ccccccccccee----EEEEeCCCceEcHHHHHH
Confidence 799999987665 999999999999875555
No 6
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.65 E-value=0.015 Score=51.61 Aligned_cols=100 Identities=13% Similarity=0.118 Sum_probs=59.6
Q ss_pred cEEEEEccCCccc-hhhH-HHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhh---CCCceeeeecCCCCCCCcCCCc
Q 013985 160 RTLIVVTPTYVRT-FQTL-HLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAK---SKLRTIHVGVDQKMPASWGGRH 234 (432)
Q Consensus 160 ~~IivVTPTy~R~-~Q~a-~LTRLa~TL~lVp~~L~WIVVEd~~~t~~va~lL~~---sgl~y~HL~~~~~~p~~~~~r~ 234 (432)
|.+.||.|||.+. .+.. -|..|.+ +..+++..|||+|++..+.+..+++. ..-..+.+..+. +.
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~---q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~- 69 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRA---QTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREE-------NG- 69 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHh---CcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEccc-------CC-
Confidence 5688999999998 4332 2333332 22236899999999765444444442 111122221111 11
Q ss_pred hhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhc
Q 013985 235 QLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (432)
Q Consensus 235 ~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR 275 (432)
+. ...||.|++..+ .=.|.|.|+|..++...++++.
T Consensus 70 g~-~~a~n~g~~~a~----~d~i~~ld~D~~~~~~~l~~~~ 105 (202)
T cd04184 70 GI-SAATNSALELAT----GEFVALLDHDDELAPHALYEVV 105 (202)
T ss_pred CH-HHHHHHHHHhhc----CCEEEEECCCCcCChHHHHHHH
Confidence 11 236999998753 2478899999999988877744
No 7
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=95.91 E-value=0.095 Score=49.19 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=64.2
Q ss_pred CCCcEEEEEccCCccchhhHHHH-hhhhhccCCCCCeEEEEEeCCCC--CHHHHHHHh-hCCCceeeeec-CCCCCCCcC
Q 013985 157 KNPRTLIVVTPTYVRTFQTLHLT-GVMHSLMLVPYDLVWIVVEAGGV--TNETASLIA-KSKLRTIHVGV-DQKMPASWG 231 (432)
Q Consensus 157 ~~~~~IivVTPTy~R~~Q~a~LT-RLa~TL~lVp~~L~WIVVEd~~~--t~~va~lL~-~sgl~y~HL~~-~~~~p~~~~ 231 (432)
.+.|.|-||.|+|........+. .+.+.+...+ ++.+|||+|++. |.++++-+. +.+....++.. +.
T Consensus 6 ~~~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~-~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~------- 77 (243)
T PLN02726 6 EGAMKYSIIVPTYNERLNIALIVYLIFKALQDVK-DFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPG------- 77 (243)
T ss_pred CCCceEEEEEccCCchhhHHHHHHHHHHHhccCC-CeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCC-------
Confidence 35678999999999876665443 3445555555 799999999874 333332222 22222222211 11
Q ss_pred CCchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhc
Q 013985 232 GRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (432)
Q Consensus 232 ~r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR 275 (432)
+. +.. ..+|.|++..+ .-+|.|.|+|..++.+.+++|-
T Consensus 78 n~-G~~-~a~n~g~~~a~----g~~i~~lD~D~~~~~~~l~~l~ 115 (243)
T PLN02726 78 KL-GLG-TAYIHGLKHAS----GDFVVIMDADLSHHPKYLPSFI 115 (243)
T ss_pred CC-CHH-HHHHHHHHHcC----CCEEEEEcCCCCCCHHHHHHHH
Confidence 11 111 25788887542 3488999999999998887743
No 8
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.84 E-value=0.061 Score=48.15 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=60.2
Q ss_pred EEccCCccchhhHHHHhhhhhccCC-CCCeEEEEEeCCCCCHHHHHHHhhCCCce--eeeecCCCCCCCcCCCchhhHHH
Q 013985 164 VVTPTYVRTFQTLHLTGVMHSLMLV-PYDLVWIVVEAGGVTNETASLIAKSKLRT--IHVGVDQKMPASWGGRHQLEAKM 240 (432)
Q Consensus 164 vVTPTy~R~~Q~a~LTRLa~TL~lV-p~~L~WIVVEd~~~t~~va~lL~~sgl~y--~HL~~~~~~p~~~~~r~~~~~~q 240 (432)
||+|||.+..... ++-++|..- .++...|||+|+++ +.+.+++++.+-.+ +++..+.+. +. ...
T Consensus 1 viI~~~n~~~~l~---~~l~sl~~q~~~~~eiiivD~~s~-d~t~~~~~~~~~~~~i~~~~~~~n~--------g~-~~~ 67 (202)
T cd04185 1 AVVVTYNRLDLLK---ECLDALLAQTRPPDHIIVIDNAST-DGTAEWLTSLGDLDNIVYLRLPENL--------GG-AGG 67 (202)
T ss_pred CEEEeeCCHHHHH---HHHHHHHhccCCCceEEEEECCCC-cchHHHHHHhcCCCceEEEECcccc--------ch-hhH
Confidence 6889999875443 333333221 12567899998864 33555555544432 334332211 11 135
Q ss_pred HHHHHHHHHhccCCeEEEEecCCCccchhhhhhhcce
Q 013985 241 RLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQNV 277 (432)
Q Consensus 241 RN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR~t 277 (432)
+|.|+++.. +...-.|.|.|||..++-..++++-+.
T Consensus 68 ~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~ 103 (202)
T cd04185 68 FYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAY 103 (202)
T ss_pred HHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHH
Confidence 889998886 322337888899999999998886543
No 9
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=95.81 E-value=0.052 Score=49.20 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=61.7
Q ss_pred cEEEEEccCCccchhhHHHHhhhhhccCCC-CC--eEEEEEeCCCCCHHHHHHHhhCCCce--eeeecCCCCCCCcCCCc
Q 013985 160 RTLIVVTPTYVRTFQTLHLTGVMHSLMLVP-YD--LVWIVVEAGGVTNETASLIAKSKLRT--IHVGVDQKMPASWGGRH 234 (432)
Q Consensus 160 ~~IivVTPTy~R~~Q~a~LTRLa~TL~lVp-~~--L~WIVVEd~~~t~~va~lL~~sgl~y--~HL~~~~~~p~~~~~r~ 234 (432)
|.|-||.|||.+.. ..|.+.-+.|..-. ++ +..|||+|++ ++.+.+++++.+..+ ..+.... + .+
T Consensus 1 p~vsviip~~n~~~--~~l~~~l~sl~~q~~~~~~~eiivvdd~s-~d~t~~~~~~~~~~~~~~~~~~~~----~---~~ 70 (234)
T cd06421 1 PTVDVFIPTYNEPL--EIVRKTLRAALAIDYPHDKLRVYVLDDGR-RPELRALAAELGVEYGYRYLTRPD----N---RH 70 (234)
T ss_pred CceEEEEecCCCcH--HHHHHHHHHHHhcCCCcccEEEEEEcCCC-chhHHHHHHHhhcccCceEEEeCC----C---CC
Confidence 57899999999742 12333333333321 24 7899998875 566777777766543 2221111 1 11
Q ss_pred hhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhc
Q 013985 235 QLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (432)
Q Consensus 235 ~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR 275 (432)
....++|.|++.. ..=+|.|.|+|...+...+++|-
T Consensus 71 -~~~~~~n~~~~~a----~~d~i~~lD~D~~~~~~~l~~l~ 106 (234)
T cd06421 71 -AKAGNLNNALAHT----TGDFVAILDADHVPTPDFLRRTL 106 (234)
T ss_pred -CcHHHHHHHHHhC----CCCEEEEEccccCcCccHHHHHH
Confidence 1123689999765 23489999999999888777643
No 10
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.80 E-value=0.044 Score=49.37 Aligned_cols=92 Identities=18% Similarity=0.236 Sum_probs=59.3
Q ss_pred EEEEccCCccchhhHH-HHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhCCCceeeeecCCCCCCCcCCCchhhHHH
Q 013985 162 LIVVTPTYVRTFQTLH-LTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAKM 240 (432)
Q Consensus 162 IivVTPTy~R~~Q~a~-LTRLa~TL~lVp~~L~WIVVEd~~~t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r~~~~~~q 240 (432)
|-||.|||.+.....+ |..|.+ +...++-.|||+|++ ++.+..++++.+ ..++..+ . +. ...
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~---q~~~~~evivvdd~s-~d~~~~~~~~~~--~~~~~~~---------~-g~-~~a 63 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRR---LNPLPLEIIVVDGGS-TDGTVAIARSAG--VVVISSP---------K-GR-ARQ 63 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHh---ccCCCcEEEEEeCCC-CccHHHHHhcCC--eEEEeCC---------c-CH-HHH
Confidence 3478899999754433 334432 221368889998876 455566676633 3333221 1 11 136
Q ss_pred HHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 013985 241 RLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 241 RN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdem 274 (432)
+|.|++..+ .-+|.|.|+|..++...+++|
T Consensus 64 ~n~g~~~a~----~~~i~~~D~D~~~~~~~l~~l 93 (221)
T cd02522 64 MNAGAAAAR----GDWLLFLHADTRLPPDWDAAI 93 (221)
T ss_pred HHHHHHhcc----CCEEEEEcCCCCCChhHHHHH
Confidence 899997754 468999999999999999885
No 11
>PRK10018 putative glycosyl transferase; Provisional
Probab=95.69 E-value=0.13 Score=50.85 Aligned_cols=99 Identities=11% Similarity=0.146 Sum_probs=61.7
Q ss_pred CCcEEEEEccCCccchhhHH-HHh-hhhhccCCCCCeEEEEEeCCCCCH-HHHHHHhhCCC-ceeeeecCCCCCCCcCCC
Q 013985 158 NPRTLIVVTPTYVRTFQTLH-LTG-VMHSLMLVPYDLVWIVVEAGGVTN-ETASLIAKSKL-RTIHVGVDQKMPASWGGR 233 (432)
Q Consensus 158 ~~~~IivVTPTy~R~~Q~a~-LTR-La~TL~lVp~~L~WIVVEd~~~t~-~va~lL~~sgl-~y~HL~~~~~~p~~~~~r 233 (432)
..|.|-||+|||.+..-... |.. ++|| .+ ++-+|||+|++.+. .+.+++++.+- ..+++..+. +.
T Consensus 3 ~~p~VSVIip~yN~~~~l~~~l~Svl~Qt---~~-~~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~~-------n~ 71 (279)
T PRK10018 3 DNPLISIYMPTWNRQQLAIRAIKSVLRQD---YS-NWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHNDI-------NS 71 (279)
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHHHHhCC---CC-CeEEEEEECCCCCHHHHHHHHHHcCCCCEEEEECCC-------CC
Confidence 57899999999998653221 222 2233 23 79999999998764 45566654322 222222211 11
Q ss_pred chhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 013985 234 HQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (432)
Q Consensus 234 ~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFde 273 (432)
+. ...||.|++.. ..-.|.|.|+|..+..+.+++
T Consensus 72 -G~-~~a~N~gi~~a----~g~~I~~lDaDD~~~p~~l~~ 105 (279)
T PRK10018 72 -GA-CAVRNQAIMLA----QGEYITGIDDDDEWTPNRLSV 105 (279)
T ss_pred -CH-HHHHHHHHHHc----CCCEEEEECCCCCCCccHHHH
Confidence 22 13699999753 345889999999998876654
No 12
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=95.26 E-value=0.066 Score=47.63 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=57.1
Q ss_pred EEccCCccchhhHHHHhhhhhccCCC-CCeEEEEEeCCCCCHHHHHHHhhC--CCceeeeecCCCCCCCcCCCchhhHHH
Q 013985 164 VVTPTYVRTFQTLHLTGVMHSLMLVP-YDLVWIVVEAGGVTNETASLIAKS--KLRTIHVGVDQKMPASWGGRHQLEAKM 240 (432)
Q Consensus 164 vVTPTy~R~~Q~a~LTRLa~TL~lVp-~~L~WIVVEd~~~t~~va~lL~~s--gl~y~HL~~~~~~p~~~~~r~~~~~~q 240 (432)
||.|||.+.. ...|-+.-++|..-. .+.-+|||+|++.++.+..++++. ..+.+++..+.+ . +. ...
T Consensus 2 viip~~n~~~-~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~n-------~-G~-~~a 71 (201)
T cd04195 2 VLMSVYIKEK-PEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEKN-------R-GL-GKA 71 (201)
T ss_pred EEEEccccch-HHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCcc-------c-cH-HHH
Confidence 6788887641 123334443333221 147789999998777666666542 112344433221 1 11 136
Q ss_pred HHHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 013985 241 RLRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (432)
Q Consensus 241 RN~AL~~IR~~~~~GVVyFADDDNtYdl~LFde 273 (432)
||.|++.- ..-.|.|.|+|..+....+++
T Consensus 72 ~N~g~~~a----~gd~i~~lD~Dd~~~~~~l~~ 100 (201)
T cd04195 72 LNEGLKHC----TYDWVARMDTDDISLPDRFEK 100 (201)
T ss_pred HHHHHHhc----CCCEEEEeCCccccCcHHHHH
Confidence 99999753 234899999999999877766
No 13
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=95.26 E-value=0.11 Score=43.01 Aligned_cols=94 Identities=20% Similarity=0.245 Sum_probs=55.2
Q ss_pred EEccCCccchhhHHHHhhhhhc-cCCCCCeEEEEEeCCCCCHHHHHHHhhCCC----ceeeeecCCCCCCCcCCCchhhH
Q 013985 164 VVTPTYVRTFQTLHLTGVMHSL-MLVPYDLVWIVVEAGGVTNETASLIAKSKL----RTIHVGVDQKMPASWGGRHQLEA 238 (432)
Q Consensus 164 vVTPTy~R~~Q~a~LTRLa~TL-~lVp~~L~WIVVEd~~~t~~va~lL~~sgl----~y~HL~~~~~~p~~~~~r~~~~~ 238 (432)
||-|||.++.+.. ++-++| ++...+.--|||+|++.. .+.+++++... ....+.... ..+. .
T Consensus 1 Viip~~n~~~~l~---~~l~sl~~q~~~~~~iivvdd~s~d-~t~~~~~~~~~~~~~~~~~~~~~~-------~~g~--~ 67 (180)
T cd06423 1 IIVPAYNEEAVIE---RTIESLLALDYPKLEVIVVDDGSTD-DTLEILEELAALYIRRVLVVRDKE-------NGGK--A 67 (180)
T ss_pred CeecccChHHHHH---HHHHHHHhCCCCceEEEEEeCCCcc-chHHHHHHHhccccceEEEEEecc-------cCCc--h
Confidence 5778999984333 322222 222136788899888642 23334443322 122222111 1111 2
Q ss_pred HHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 013985 239 KMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 239 ~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdem 274 (432)
.+||.|++.. ..-+|.|.|+|..+.-..+++|
T Consensus 68 ~~~n~~~~~~----~~~~i~~~D~D~~~~~~~l~~~ 99 (180)
T cd06423 68 GALNAGLRHA----KGDIVVVLDADTILEPDALKRL 99 (180)
T ss_pred HHHHHHHHhc----CCCEEEEECCCCCcChHHHHHH
Confidence 4799999886 3457899999999999988887
No 14
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=95.19 E-value=0.064 Score=50.10 Aligned_cols=94 Identities=23% Similarity=0.243 Sum_probs=63.9
Q ss_pred EEEEccCCccchhhHHHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhCCCceeeeecCCCCCCCcCCCchhhHHHH
Q 013985 162 LIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAKMR 241 (432)
Q Consensus 162 IivVTPTy~R~~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~~t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r~~~~~~qR 241 (432)
|-||.|||.... .|.+.-++|.... -.-|||+++++ +.|.+++++.++...|. . + . +. ..+|
T Consensus 2 isvii~~~Ne~~---~l~~~l~sl~~~~--~eiivvD~gSt-D~t~~i~~~~~~~v~~~--~------~--~-g~-~~~~ 63 (229)
T cd02511 2 LSVVIITKNEER---NIERCLESVKWAV--DEIIVVDSGST-DRTVEIAKEYGAKVYQR--W------W--D-GF-GAQR 63 (229)
T ss_pred EEEEEEeCCcHH---HHHHHHHHHhccc--CEEEEEeCCCC-ccHHHHHHHcCCEEEEC--C------C--C-Ch-HHHH
Confidence 678999999753 3444444444332 25678877754 45778888888877665 1 1 1 11 2489
Q ss_pred HHHHHHHHhccCCeEEEEecCCCccchhhhhhhcce
Q 013985 242 LRALRIVREEKLDGIVMFADDSNMHSMELFDEIQNV 277 (432)
Q Consensus 242 N~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR~t 277 (432)
|.|+...+. + .|.|.|+|..++.++++++.+.
T Consensus 64 n~~~~~a~~---d-~vl~lDaD~~~~~~~~~~l~~~ 95 (229)
T cd02511 64 NFALELATN---D-WVLSLDADERLTPELADEILAL 95 (229)
T ss_pred HHHHHhCCC---C-EEEEEeCCcCcCHHHHHHHHHH
Confidence 999976432 2 8999999999999999887653
No 15
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.13 E-value=0.099 Score=45.46 Aligned_cols=92 Identities=15% Similarity=0.287 Sum_probs=52.6
Q ss_pred EEccCCccchhhH-HHHhhh-hhccCCCCCeEEEEEeCCCCCHHHHHHHhhCCCceeeeecCCCCCCCcCCCchhhHHHH
Q 013985 164 VVTPTYVRTFQTL-HLTGVM-HSLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAKMR 241 (432)
Q Consensus 164 vVTPTy~R~~Q~a-~LTRLa-~TL~lVp~~L~WIVVEd~~~t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r~~~~~~qR 241 (432)
||.|||.+..... -|..+. |+. + ++..|||+|++. +.+.+++++-.-...++...++ . +. ...|
T Consensus 2 ivi~~~n~~~~l~~~l~sl~~q~~---~-~~evivvDd~s~-d~~~~~~~~~~~~~~~~~~~~~-------~-g~-~~a~ 67 (202)
T cd06433 2 IITPTYNQAETLEETIDSVLSQTY---P-NIEYIVIDGGST-DGTVDIIKKYEDKITYWISEPD-------K-GI-YDAM 67 (202)
T ss_pred EEEeccchHHHHHHHHHHHHhCCC---C-CceEEEEeCCCC-ccHHHHHHHhHhhcEEEEecCC-------c-CH-HHHH
Confidence 6889999874322 234443 332 3 588899998864 2244444443322122212211 1 11 2479
Q ss_pred HHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 013985 242 LRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (432)
Q Consensus 242 N~AL~~IR~~~~~GVVyFADDDNtYdl~LFde 273 (432)
|.||+..+ .-+|.|.|+|..+..+-+.+
T Consensus 68 n~~~~~a~----~~~v~~ld~D~~~~~~~~~~ 95 (202)
T cd06433 68 NKGIALAT----GDIIGFLNSDDTLLPGALLA 95 (202)
T ss_pred HHHHHHcC----CCEEEEeCCCcccCchHHHH
Confidence 99998753 34888999998887665544
No 16
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.04 E-value=0.12 Score=43.67 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=58.2
Q ss_pred EEccCCccchhhHHHHhhhhhccCCC-CCeEEEEEeCCCCCHHHHHHHhhCCCceeeeecCCCCCCCcCCCchhhHHHHH
Q 013985 164 VVTPTYVRTFQTLHLTGVMHSLMLVP-YDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAKMRL 242 (432)
Q Consensus 164 vVTPTy~R~~Q~a~LTRLa~TL~lVp-~~L~WIVVEd~~~t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r~~~~~~qRN 242 (432)
||.|||.|.. .|.++.++|.... ++..-|||.|+++.+ +.+.+.+..-..+.+..+. ..+. ...||
T Consensus 1 vii~~~~~~~---~l~~~l~sl~~~~~~~~~iiivdd~s~~~-~~~~~~~~~~~~~~~~~~~-------~~g~--~~a~n 67 (166)
T cd04186 1 IIIVNYNSLE---YLKACLDSLLAQTYPDFEVIVVDNASTDG-SVELLRELFPEVRLIRNGE-------NLGF--GAGNN 67 (166)
T ss_pred CEEEecCCHH---HHHHHHHHHHhccCCCeEEEEEECCCCch-HHHHHHHhCCCeEEEecCC-------CcCh--HHHhh
Confidence 5789998842 3445555544331 257778888887543 4444444332222222111 1111 13699
Q ss_pred HHHHHHHhccCCeEEEEecCCCccchhhhhhhcc
Q 013985 243 RALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (432)
Q Consensus 243 ~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR~ 276 (432)
.|++.. ..-.|.|.|||..++...+++|-+
T Consensus 68 ~~~~~~----~~~~i~~~D~D~~~~~~~l~~~~~ 97 (166)
T cd04186 68 QGIREA----KGDYVLLLNPDTVVEPGALLELLD 97 (166)
T ss_pred HHHhhC----CCCEEEEECCCcEECccHHHHHHH
Confidence 999887 456899999999999998877654
No 17
>PRK10063 putative glycosyl transferase; Provisional
Probab=94.90 E-value=0.19 Score=48.53 Aligned_cols=98 Identities=12% Similarity=0.193 Sum_probs=55.2
Q ss_pred cEEEEEccCCccchhhH-HHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhCCC--ceeeeecCCCCCCCcCCCchh
Q 013985 160 RTLIVVTPTYVRTFQTL-HLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKSKL--RTIHVGVDQKMPASWGGRHQL 236 (432)
Q Consensus 160 ~~IivVTPTy~R~~Q~a-~LTRLa~TL~lVp~~L~WIVVEd~~~t~~va~lL~~sgl--~y~HL~~~~~~p~~~~~r~~~ 236 (432)
|.|-||+|||....... -|..+.+....-..++-+|||+|++ +..+.+++++.+- ...++..+ +. +.
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgS-tD~t~~i~~~~~~~~~i~~i~~~--------~~-G~ 70 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGS-NDGTREFLENLNGIFNLRFVSEP--------DN-GI 70 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcC-cccHHHHHHHhcccCCEEEEECC--------CC-CH
Confidence 56889999998754333 2233332222222268999999987 3445666666431 22222211 12 22
Q ss_pred hHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhh
Q 013985 237 EAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFD 272 (432)
Q Consensus 237 ~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFd 272 (432)
. ..+|.|++.-+ .=+|.|.|+|..+.-..++
T Consensus 71 ~-~A~N~Gi~~a~----g~~v~~ld~DD~~~~~~~~ 101 (248)
T PRK10063 71 Y-DAMNKGIAMAQ----GRFALFLNSGDIFHQDAAN 101 (248)
T ss_pred H-HHHHHHHHHcC----CCEEEEEeCCcccCcCHHH
Confidence 2 36999998642 2378888866666555433
No 18
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.72 E-value=0.28 Score=44.01 Aligned_cols=98 Identities=11% Similarity=0.053 Sum_probs=58.2
Q ss_pred EEccCCccchhhH-HHHhhh-hhccCCCCC--eEEEEEeCCCC--CHHHHH-HHhhCCCceeeeecCCCCCCCcCCCchh
Q 013985 164 VVTPTYVRTFQTL-HLTGVM-HSLMLVPYD--LVWIVVEAGGV--TNETAS-LIAKSKLRTIHVGVDQKMPASWGGRHQL 236 (432)
Q Consensus 164 vVTPTy~R~~Q~a-~LTRLa-~TL~lVp~~--L~WIVVEd~~~--t~~va~-lL~~sgl~y~HL~~~~~~p~~~~~r~~~ 236 (432)
||.|||.+..... -|..|. |+ .+ + +..|||+|++. |..+.+ .....+..++++..+. +. ..+.
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~---~~-~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~--~~---~~g~- 70 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALD---YP-KEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSR--VS---ISGK- 70 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCC---CC-CCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccC--cc---cchh-
Confidence 5889999864433 223332 22 12 4 78899998863 344433 3344556666665432 10 1111
Q ss_pred hHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhcc
Q 013985 237 EAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (432)
Q Consensus 237 ~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR~ 276 (432)
...+|.|+.. ...-+|.|.|+|..++-+.+++|-.
T Consensus 71 -~~a~n~g~~~----~~~d~i~~~D~D~~~~~~~l~~l~~ 105 (229)
T cd04192 71 -KNALTTAIKA----AKGDWIVTTDADCVVPSNWLLTFVA 105 (229)
T ss_pred -HHHHHHHHHH----hcCCEEEEECCCcccCHHHHHHHHH
Confidence 1246667654 3456999999999999998888654
No 19
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.71 E-value=0.21 Score=40.42 Aligned_cols=98 Identities=24% Similarity=0.258 Sum_probs=55.2
Q ss_pred CcEEEEEccCCccchhhHHHHhhhhhccCC-CCCeEEEEEeCCCC--CHHHHHHHhhCCCceeeeecCCCCCCCcCCCch
Q 013985 159 PRTLIVVTPTYVRTFQTLHLTGVMHSLMLV-PYDLVWIVVEAGGV--TNETASLIAKSKLRTIHVGVDQKMPASWGGRHQ 235 (432)
Q Consensus 159 ~~~IivVTPTy~R~~Q~a~LTRLa~TL~lV-p~~L~WIVVEd~~~--t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r~~ 235 (432)
.+.|=||.|||.+.. .|.+.-..+..- ..+.-.|||+|+++ |.++++-+........+...+.+ . +
T Consensus 2 ~~~~siiip~~n~~~---~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~~~~~~~~~~~~-------~-g 70 (291)
T COG0463 2 MPKVSVVIPTYNEEE---YLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKDVRVIRLINERN-------G-G 70 (291)
T ss_pred CccEEEEEeccchhh---hHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhcceEEEeecccC-------C-C
Confidence 577889999999972 222222222211 11356889998874 44444444433222222222211 1 1
Q ss_pred hhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 013985 236 LEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (432)
Q Consensus 236 ~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFde 273 (432)
. ...||.++.+... -.|.|.|+|+. ....+.+
T Consensus 71 ~-~~~~~~~~~~~~~----~~~~~~d~d~~-~~~~~~~ 102 (291)
T COG0463 71 L-GAARNAGLEYARG----DYIVFLDADDQ-HPPELIP 102 (291)
T ss_pred h-HHHHHhhHHhccC----CEEEEEccCCC-CCHHHHH
Confidence 1 2469999988765 57788888888 6655554
No 20
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.60 E-value=0.18 Score=44.72 Aligned_cols=98 Identities=16% Similarity=0.175 Sum_probs=53.8
Q ss_pred EEccCCccchhhHHHHhhhhhccC-CCCCeEEEEEeCCCC--CHHHH-HHHhhCCCceeeeecCCCCCCCcCCCchhhHH
Q 013985 164 VVTPTYVRTFQTLHLTGVMHSLML-VPYDLVWIVVEAGGV--TNETA-SLIAKSKLRTIHVGVDQKMPASWGGRHQLEAK 239 (432)
Q Consensus 164 vVTPTy~R~~Q~a~LTRLa~TL~l-Vp~~L~WIVVEd~~~--t~~va-~lL~~sgl~y~HL~~~~~~p~~~~~r~~~~~~ 239 (432)
||.|||.+.... .+.-+.|.. -.+++-+|||+|+++ |..+. ++.++.+...+++.... .. +. ..
T Consensus 2 IvIp~yn~~~~l---~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~-------~~-G~-~~ 69 (214)
T cd04196 2 VLMATYNGEKYL---REQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGK-------NL-GV-AR 69 (214)
T ss_pred EEEEecCcHHHH---HHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCC-------Cc-cH-HH
Confidence 789999998433 333333222 122699999999874 33332 22222221222221111 11 21 23
Q ss_pred HHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhcce
Q 013985 240 MRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQNV 277 (432)
Q Consensus 240 qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR~t 277 (432)
.+|.|++. ...=+|.|.|+|..++..-+++|-+.
T Consensus 70 ~~n~g~~~----~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 70 NFESLLQA----ADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred HHHHHHHh----CCCCEEEEECCCcccChhHHHHHHHH
Confidence 57777543 22347889999999998877665543
No 21
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=94.53 E-value=0.26 Score=45.18 Aligned_cols=99 Identities=14% Similarity=0.102 Sum_probs=61.5
Q ss_pred EEccCCccchhhHHHHhhhhhccCCC-CCeEEEEEeCCCCCH----HHHHHHhhCCCceeeeecCCCCCCCcCCCchhhH
Q 013985 164 VVTPTYVRTFQTLHLTGVMHSLMLVP-YDLVWIVVEAGGVTN----ETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEA 238 (432)
Q Consensus 164 vVTPTy~R~~Q~a~LTRLa~TL~lVp-~~L~WIVVEd~~~t~----~va~lL~~sgl~y~HL~~~~~~p~~~~~r~~~~~ 238 (432)
||.|||.... ..|.++-.+|.... +++-.|||+|++..+ .+.+++++.+..++.+....+. +. ..
T Consensus 2 iiip~~ne~~--~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~-------G~-~~ 71 (236)
T cd06435 2 IHVPCYEEPP--EMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLP-------GA-KA 71 (236)
T ss_pred eeEeeCCCcH--HHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCC-------CC-ch
Confidence 6889999862 12344444444332 267789999886432 3567777766555544332211 11 11
Q ss_pred HHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 013985 239 KMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 239 ~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdem 274 (432)
..+|.|++..... .-+|.|.|+|..++...+++|
T Consensus 72 ~a~n~g~~~a~~~--~d~i~~lD~D~~~~~~~l~~l 105 (236)
T cd06435 72 GALNYALERTAPD--AEIIAVIDADYQVEPDWLKRL 105 (236)
T ss_pred HHHHHHHHhcCCC--CCEEEEEcCCCCcCHHHHHHH
Confidence 3589999875321 238999999999998888775
No 22
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=94.30 E-value=0.29 Score=43.14 Aligned_cols=100 Identities=23% Similarity=0.228 Sum_probs=59.3
Q ss_pred EEccCCccchhhHHH-HhhhhhccCCCCCeEEEEEeCCCC--CHHHHHHHhhCCCceeeeecCCCCCCCcCCCchhhHHH
Q 013985 164 VVTPTYVRTFQTLHL-TGVMHSLMLVPYDLVWIVVEAGGV--TNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAKM 240 (432)
Q Consensus 164 vVTPTy~R~~Q~a~L-TRLa~TL~lVp~~L~WIVVEd~~~--t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r~~~~~~q 240 (432)
||.|||.+..+..++ ..|...+.+...++.=|||.|++. |..+.+-+....-..+.+..+.+ .+. ...
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i~~~~n-------~G~--~~a 71 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPRVKVIRLSRN-------FGQ--QAA 71 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEecCC-------CCc--HHH
Confidence 588999998776643 334444443223567678888764 33444333332223333333221 111 135
Q ss_pred HHHHHHHHHhccCCeEEEEecCCCccchhhhhhhcc
Q 013985 241 RLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (432)
Q Consensus 241 RN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR~ 276 (432)
+|.|+++.. .-+|.|.|+|..++.+..++|-+
T Consensus 72 ~n~g~~~a~----~d~i~~~D~D~~~~~~~l~~l~~ 103 (181)
T cd04187 72 LLAGLDHAR----GDAVITMDADLQDPPELIPEMLA 103 (181)
T ss_pred HHHHHHhcC----CCEEEEEeCCCCCCHHHHHHHHH
Confidence 788887653 35888999999999988877544
No 23
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=93.92 E-value=0.31 Score=44.15 Aligned_cols=101 Identities=13% Similarity=0.212 Sum_probs=58.6
Q ss_pred EEccCCccchhhHHHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHh-h---CCCceeeeecCCCCCCCcCCCchhhHH
Q 013985 164 VVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIA-K---SKLRTIHVGVDQKMPASWGGRHQLEAK 239 (432)
Q Consensus 164 vVTPTy~R~~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~~t~~va~lL~-~---sgl~y~HL~~~~~~p~~~~~r~~~~~~ 239 (432)
||.|||.... .|.++-++|....+++--|||+|++. +.+.++++ . .++.+.+... +. ...++ ..
T Consensus 1 ViIp~~Ne~~---~l~~~l~sl~~~~~~~eIivvdd~S~-D~t~~~~~~~~~~~~v~~i~~~~----~~--~~~Gk--~~ 68 (191)
T cd06436 1 VLVPCLNEEA---VIQRTLASLLRNKPNFLVLVIDDASD-DDTAGIVRLAITDSRVHLLRRHL----PN--ARTGK--GD 68 (191)
T ss_pred CEEeccccHH---HHHHHHHHHHhCCCCeEEEEEECCCC-cCHHHHHhheecCCcEEEEeccC----Cc--CCCCH--HH
Confidence 5788998754 34444444433223688889988863 33344443 1 2222222111 10 11222 24
Q ss_pred HHHHHHHHHHhcc-CC-----e-EEEEecCCCccchhhhhhhcc
Q 013985 240 MRLRALRIVREEK-LD-----G-IVMFADDSNMHSMELFDEIQN 276 (432)
Q Consensus 240 qRN~AL~~IR~~~-~~-----G-VVyFADDDNtYdl~LFdemR~ 276 (432)
.+|.|++.++... .. + +|.|.|.|..++...++++..
T Consensus 69 aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~ 112 (191)
T cd06436 69 ALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAP 112 (191)
T ss_pred HHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHH
Confidence 7999999987531 12 2 889999999999988877543
No 24
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=93.85 E-value=0.51 Score=38.03 Aligned_cols=95 Identities=21% Similarity=0.292 Sum_probs=53.0
Q ss_pred EEccCCccchhhHHHHhhhhhccCCC-CCeEEEEEeCCCCCHHHHHHHhhCC--CceeeeecCCCCCCCcCCCchhhHHH
Q 013985 164 VVTPTYVRTFQTLHLTGVMHSLMLVP-YDLVWIVVEAGGVTNETASLIAKSK--LRTIHVGVDQKMPASWGGRHQLEAKM 240 (432)
Q Consensus 164 vVTPTy~R~~Q~a~LTRLa~TL~lVp-~~L~WIVVEd~~~t~~va~lL~~sg--l~y~HL~~~~~~p~~~~~r~~~~~~q 240 (432)
+|.|+|.+. ..|.....++.... .+...+|+.+++.......+.+... .......... ..+. ...
T Consensus 1 iii~~~~~~---~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~--~~~ 68 (156)
T cd00761 1 VIIPAYNEE---PYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVINEE-------NQGL--AAA 68 (156)
T ss_pred CEEeecCcH---HHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEecC-------CCCh--HHH
Confidence 467888883 23333333333321 2578888888864322222222221 1122221111 1111 136
Q ss_pred HHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 013985 241 RLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 241 RN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdem 274 (432)
+|.|+++. ...+|.|.|+|+.++.+.++++
T Consensus 69 ~~~~~~~~----~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 69 RNAGLKAA----RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred HHHHHHHh----cCCEEEEECCCCccCccHHHHH
Confidence 88888887 4678999999999999988775
No 25
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=93.81 E-value=0.24 Score=45.16 Aligned_cols=94 Identities=16% Similarity=0.191 Sum_probs=56.9
Q ss_pred EEccCCccchhhHHHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHh--hCCCceeeeecCCCCCCCcCCCchhhHHHH
Q 013985 164 VVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIA--KSKLRTIHVGVDQKMPASWGGRHQLEAKMR 241 (432)
Q Consensus 164 vVTPTy~R~~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~~t~~va~lL~--~sgl~y~HL~~~~~~p~~~~~r~~~~~~qR 241 (432)
+|.|||.+.. ..|.+.-++|..- +...|||++++.. .+...++ ..++.+.+. +.+ .+. ...|
T Consensus 1 ~vI~~yn~~~--~~l~~~l~sl~~q--~~~iivvDn~s~~-~~~~~~~~~~~~i~~i~~--~~n-------~G~--~~a~ 64 (237)
T cd02526 1 AVVVTYNPDL--SKLKELLAALAEQ--VDKVVVVDNSSGN-DIELRLRLNSEKIELIHL--GEN-------LGI--AKAL 64 (237)
T ss_pred CEEEEecCCH--HHHHHHHHHHhcc--CCEEEEEeCCCCc-cHHHHhhccCCcEEEEEC--CCc-------eeh--HHhh
Confidence 4678888762 2234444443332 4677899887532 2222222 344444332 211 111 2369
Q ss_pred HHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 013985 242 LRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 242 N~AL~~IR~~~~~GVVyFADDDNtYdl~LFdem 274 (432)
|.|++..+.. ..=.|.|.|+|...+.+.+++|
T Consensus 65 N~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l 96 (237)
T cd02526 65 NIGIKAALEN-GADYVLLFDQDSVPPPDMVEKL 96 (237)
T ss_pred hHHHHHHHhC-CCCEEEEECCCCCcCHhHHHHH
Confidence 9999987664 2348999999999999999998
No 26
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=93.79 E-value=0.47 Score=42.79 Aligned_cols=95 Identities=20% Similarity=0.244 Sum_probs=55.0
Q ss_pred EEccCCccchhhHHHHhhhhhccCC--CCCeEEEEEeCCCC--CHHHHH-HHhhCC-CceeeeecCCCCCCCcCCCchhh
Q 013985 164 VVTPTYVRTFQTLHLTGVMHSLMLV--PYDLVWIVVEAGGV--TNETAS-LIAKSK-LRTIHVGVDQKMPASWGGRHQLE 237 (432)
Q Consensus 164 vVTPTy~R~~Q~a~LTRLa~TL~lV--p~~L~WIVVEd~~~--t~~va~-lL~~sg-l~y~HL~~~~~~p~~~~~r~~~~ 237 (432)
||.|||.+.... .++-++|..- ..++.-|||+|++. |..+++ +.++-. +.+.+. +. +.+..
T Consensus 1 ViIp~yn~~~~l---~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~--~~-------n~G~~- 67 (224)
T cd06442 1 IIIPTYNERENI---PELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVR--PG-------KRGLG- 67 (224)
T ss_pred CeEeccchhhhH---HHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCCceEEEec--CC-------CCChH-
Confidence 578999987443 3333332221 23688999998863 333333 222221 222222 11 11111
Q ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhcc
Q 013985 238 AKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (432)
Q Consensus 238 ~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR~ 276 (432)
..+|.|++..+. -+|.|.|+|..++.+.++.|-+
T Consensus 68 -~a~n~g~~~a~g----d~i~~lD~D~~~~~~~l~~l~~ 101 (224)
T cd06442 68 -SAYIEGFKAARG----DVIVVMDADLSHPPEYIPELLE 101 (224)
T ss_pred -HHHHHHHHHcCC----CEEEEEECCCCCCHHHHHHHHH
Confidence 358999987543 4789999999999988877544
No 27
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=93.55 E-value=0.73 Score=42.65 Aligned_cols=102 Identities=20% Similarity=0.248 Sum_probs=59.8
Q ss_pred CCCCCCcEEEEEccCCccchhhHHHHhhhhhccC-CCCC--eEEEEEeCCCCCHHHHHHHhhCC---CceeeeecCCCCC
Q 013985 154 FGFKNPRTLIVVTPTYVRTFQTLHLTGVMHSLML-VPYD--LVWIVVEAGGVTNETASLIAKSK---LRTIHVGVDQKMP 227 (432)
Q Consensus 154 ~g~~~~~~IivVTPTy~R~~Q~a~LTRLa~TL~l-Vp~~--L~WIVVEd~~~t~~va~lL~~sg---l~y~HL~~~~~~p 227 (432)
......|.|-||-|||.+..- |.+.-+.+.. ..++ +.=|||.|++.. .+.+++++-+ +.+... +.
T Consensus 23 ~~~~~~~~isVvip~~n~~~~---l~~~l~si~~q~~~~~~~eiivvdd~s~d-~t~~~~~~~~~~~v~~i~~--~~--- 93 (251)
T cd06439 23 PDPAYLPTVTIIIPAYNEEAV---IEAKLENLLALDYPRDRLEIIVVSDGSTD-GTAEIAREYADKGVKLLRF--PE--- 93 (251)
T ss_pred CCCCCCCEEEEEEecCCcHHH---HHHHHHHHHhCcCCCCcEEEEEEECCCCc-cHHHHHHHHhhCcEEEEEc--CC---
Confidence 345578889999999998633 3332222222 1112 556888887632 3334444332 222222 11
Q ss_pred CCcCCCchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 013985 228 ASWGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 228 ~~~~~r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdem 274 (432)
..+. ...||.|++... .-+|.|.|+|..++.+.+++|
T Consensus 94 ----~~g~--~~a~n~gi~~a~----~d~i~~lD~D~~~~~~~l~~l 130 (251)
T cd06439 94 ----RRGK--AAALNRALALAT----GEIVVFTDANALLDPDALRLL 130 (251)
T ss_pred ----CCCh--HHHHHHHHHHcC----CCEEEEEccccCcCHHHHHHH
Confidence 1122 246899998763 268999999999998877664
No 28
>PRK10073 putative glycosyl transferase; Provisional
Probab=93.54 E-value=0.72 Score=46.45 Aligned_cols=101 Identities=18% Similarity=0.239 Sum_probs=61.3
Q ss_pred CCcEEEEEccCCccchhhHHHHhhhhhccC-CCCCeEEEEEeCCCC--CHHHHHHHhhCCCceeeeecCCCCCCCcCCCc
Q 013985 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLML-VPYDLVWIVVEAGGV--TNETASLIAKSKLRTIHVGVDQKMPASWGGRH 234 (432)
Q Consensus 158 ~~~~IivVTPTy~R~~Q~a~LTRLa~TL~l-Vp~~L~WIVVEd~~~--t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r~ 234 (432)
+.|.|-||.|+|.+. ..|.+.-++|.. --.++-.|||+|+++ |..+.+-+....-....+. .++ .
T Consensus 4 ~~p~vSVIIP~yN~~---~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~vi~-~~n-------~- 71 (328)
T PRK10073 4 STPKLSIIIPLYNAG---KDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYPHVRLLH-QAN-------A- 71 (328)
T ss_pred CCCeEEEEEeccCCH---HHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEE-CCC-------C-
Confidence 458899999999985 244443333322 113789999999974 3344433332211122221 111 1
Q ss_pred hhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhc
Q 013985 235 QLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (432)
Q Consensus 235 ~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR 275 (432)
+. ...||.||+.. ..-.|.|.|+|..++.+.+++|-
T Consensus 72 G~-~~arN~gl~~a----~g~yi~flD~DD~~~p~~l~~l~ 107 (328)
T PRK10073 72 GV-SVARNTGLAVA----TGKYVAFPDADDVVYPTMYETLM 107 (328)
T ss_pred Ch-HHHHHHHHHhC----CCCEEEEECCCCccChhHHHHHH
Confidence 22 23699999764 23589999999999988877654
No 29
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=93.49 E-value=0.42 Score=43.67 Aligned_cols=96 Identities=11% Similarity=0.079 Sum_probs=52.4
Q ss_pred EEccCCccchhhHHHHhhhhhccC--CCCCeEEEEEeCCCC--CHH-HHHHHhh---CCCceeeeecCCCCCCCcCCCch
Q 013985 164 VVTPTYVRTFQTLHLTGVMHSLML--VPYDLVWIVVEAGGV--TNE-TASLIAK---SKLRTIHVGVDQKMPASWGGRHQ 235 (432)
Q Consensus 164 vVTPTy~R~~Q~a~LTRLa~TL~l--Vp~~L~WIVVEd~~~--t~~-va~lL~~---sgl~y~HL~~~~~~p~~~~~r~~ 235 (432)
||.|||.+..+. .++-++|.. .+.++-.|||+|++. |.. +.++..+ .++.+.+.... .+ ...+
T Consensus 1 ViIp~yn~~~~l---~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~--~~----~~~G 71 (219)
T cd06913 1 IILPVHNGEQWL---DECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHN--SP----SPKG 71 (219)
T ss_pred CEEeecCcHHHH---HHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEeccc--CC----CCcc
Confidence 588999986433 333333322 132578899999863 332 2232222 23333333211 11 1112
Q ss_pred hhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 013985 236 LEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (432)
Q Consensus 236 ~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFde 273 (432)
.. ..||.|++.. ..=+|.|.|+|..++.+-+++
T Consensus 72 ~~-~a~N~g~~~a----~gd~i~~lD~D~~~~~~~l~~ 104 (219)
T cd06913 72 VG-YAKNQAIAQS----SGRYLCFLDSDDVMMPQRIRL 104 (219)
T ss_pred HH-HHHHHHHHhc----CCCEEEEECCCccCChhHHHH
Confidence 22 3689988643 223899999999998776544
No 30
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=93.45 E-value=0.77 Score=41.84 Aligned_cols=95 Identities=18% Similarity=0.178 Sum_probs=54.5
Q ss_pred EEEEccCCccc-hhhHHHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHH-hhCC-CceeeeecCCCCCCCcCCCchhhH
Q 013985 162 LIVVTPTYVRT-FQTLHLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLI-AKSK-LRTIHVGVDQKMPASWGGRHQLEA 238 (432)
Q Consensus 162 IivVTPTy~R~-~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~~t~~va~lL-~~sg-l~y~HL~~~~~~p~~~~~r~~~~~ 238 (432)
|-||.|||.+. .... +.-+.|..-. +...|||.|++..+ +..+| .... ....++. .+ ..+..
T Consensus 2 isVvIp~~ne~~~~l~---~~l~sl~~q~-~~eiivvdd~s~d~-~~~~l~~~~~~~~~~v~~-~~-------~~g~~-- 66 (235)
T cd06434 2 VTVIIPVYDEDPDVFR---ECLRSILRQK-PLEIIVVTDGDDEP-YLSILSQTVKYGGIFVIT-VP-------HPGKR-- 66 (235)
T ss_pred eEEEEeecCCChHHHH---HHHHHHHhCC-CCEEEEEeCCCChH-HHHHHHhhccCCcEEEEe-cC-------CCChH--
Confidence 56899999986 3332 2222222222 47889998887543 44443 1111 1111221 11 11122
Q ss_pred HHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhc
Q 013985 239 KMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (432)
Q Consensus 239 ~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR 275 (432)
..+|.|++.. ..=+|.|.|+|..++...++++-
T Consensus 67 ~a~n~g~~~a----~~d~v~~lD~D~~~~~~~l~~l~ 99 (235)
T cd06434 67 RALAEGIRHV----TTDIVVLLDSDTVWPPNALPEML 99 (235)
T ss_pred HHHHHHHHHh----CCCEEEEECCCceeChhHHHHHH
Confidence 3578888765 34699999999999998877754
No 31
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.42 E-value=0.35 Score=49.41 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=65.2
Q ss_pred CCCcEEEEEccCCccchhhHHHHhhhhhccC--CCCCeEEEEEeCCCCCHHHHHHHhhCCC------ceeeeecCCCCCC
Q 013985 157 KNPRTLIVVTPTYVRTFQTLHLTGVMHSLML--VPYDLVWIVVEAGGVTNETASLIAKSKL------RTIHVGVDQKMPA 228 (432)
Q Consensus 157 ~~~~~IivVTPTy~R~~Q~a~LTRLa~TL~l--Vp~~L~WIVVEd~~~t~~va~lL~~sgl------~y~HL~~~~~~p~ 228 (432)
...|.|-||.|+|....+. .+.-++|.. .|.++--|||+|+++ +.+.+++++..- ..+.+ ..++.|.
T Consensus 37 ~~~p~VSVIIpa~Ne~~~L---~~~L~sL~~q~yp~~~eIIVVDd~St-D~T~~i~~~~~~~~~~~~~i~vi-~~~~~~~ 111 (384)
T TIGR03469 37 EAWPAVVAVVPARNEADVI---GECVTSLLEQDYPGKLHVILVDDHST-DGTADIARAAARAYGRGDRLTVV-SGQPLPP 111 (384)
T ss_pred CCCCCEEEEEecCCcHhHH---HHHHHHHHhCCCCCceEEEEEeCCCC-CcHHHHHHHHHHhcCCCCcEEEe-cCCCCCC
Confidence 3578899999999986544 344444433 232467788888763 233333333211 12222 1223455
Q ss_pred CcCCCchhhHHHHHHHHHHHHhccCC-eEEEEecCCCccchhhhhhh
Q 013985 229 SWGGRHQLEAKMRLRALRIVREEKLD-GIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 229 ~~~~r~~~~~~qRN~AL~~IR~~~~~-GVVyFADDDNtYdl~LFdem 274 (432)
+|.... ...|.|++..++...+ -+|.|.|+|-..+.+-++++
T Consensus 112 g~~Gk~----~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~l 154 (384)
T TIGR03469 112 GWSGKL----WAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARL 154 (384)
T ss_pred CCcchH----HHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHH
Confidence 554322 3688999887765432 48999999999988777663
No 32
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=93.42 E-value=0.51 Score=42.91 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=54.8
Q ss_pred EEEEccCCccchhhHHHHhhhhhccCCC---CCeEEEEEeCCCCCHHHHHHHhhCCC--ceeeeecCCCCCCCcCCCchh
Q 013985 162 LIVVTPTYVRTFQTLHLTGVMHSLMLVP---YDLVWIVVEAGGVTNETASLIAKSKL--RTIHVGVDQKMPASWGGRHQL 236 (432)
Q Consensus 162 IivVTPTy~R~~Q~a~LTRLa~TL~lVp---~~L~WIVVEd~~~t~~va~lL~~sgl--~y~HL~~~~~~p~~~~~r~~~ 236 (432)
+-||.|||.+... |.++-++|+.-. .+.-=|||++++. +.+.+++++-+- +..++.... ..+.
T Consensus 2 ~sIiip~~n~~~~---l~~~l~sl~~q~~~~~~~evivvd~~s~-d~~~~~~~~~~~~~~~v~~i~~~-------~~~~- 69 (249)
T cd02525 2 VSIIIPVRNEEKY---IEELLESLLNQSYPKDLIEIIVVDGGST-DGTREIVQEYAAKDPRIRLIDNP-------KRIQ- 69 (249)
T ss_pred EEEEEEcCCchhh---HHHHHHHHHhccCCCCccEEEEEeCCCC-ccHHHHHHHHHhcCCeEEEEeCC-------CCCc-
Confidence 6789999998643 333333332211 2444567777753 334444444331 112222111 1111
Q ss_pred hHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhc
Q 013985 237 EAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (432)
Q Consensus 237 ~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR 275 (432)
...+|.|++.. ..-+|.|.|+|..++...+++|-
T Consensus 70 -~~a~N~g~~~a----~~d~v~~lD~D~~~~~~~l~~~~ 103 (249)
T cd02525 70 -SAGLNIGIRNS----RGDIIIRVDAHAVYPKDYILELV 103 (249)
T ss_pred -hHHHHHHHHHh----CCCEEEEECCCccCCHHHHHHHH
Confidence 13699999875 23578999999999988887755
No 33
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=92.82 E-value=1.3 Score=39.54 Aligned_cols=100 Identities=13% Similarity=0.057 Sum_probs=58.2
Q ss_pred EEccCCccchhhH-HHHhhhhhccCCC-CCeEEEEEeCCCCCHHHHHHHhhCCCceeeeecCCCCCCCcCCCchhhHHHH
Q 013985 164 VVTPTYVRTFQTL-HLTGVMHSLMLVP-YDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAKMR 241 (432)
Q Consensus 164 vVTPTy~R~~Q~a-~LTRLa~TL~lVp-~~L~WIVVEd~~~t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r~~~~~~qR 241 (432)
||-|+|....-.. -|..+.+.. -| .++-=|||.|++ +..|.+++++.+..+.-..-+ ..+++ ...+
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~--~p~~~~eiivvdd~s-~D~t~~~~~~~~~~~~~~~~~-------~~~gk--~~al 68 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQD--YPRELYRIFVVADNC-TDDTAQVARAAGATVLERHDP-------ERRGK--GYAL 68 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcC--CCCcccEEEEEeCCC-CchHHHHHHHcCCeEEEeCCC-------CCCCH--HHHH
Confidence 4678888753222 233333211 11 134457888886 456777888777653211111 11222 1358
Q ss_pred HHHHHHHHhccC-CeEEEEecCCCccchhhhhhhc
Q 013985 242 LRALRIVREEKL-DGIVMFADDSNMHSMELFDEIQ 275 (432)
Q Consensus 242 N~AL~~IR~~~~-~GVVyFADDDNtYdl~LFdemR 275 (432)
|.|+++.++... .-+|.|.|.|..++.+.+.+|.
T Consensus 69 n~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~ 103 (183)
T cd06438 69 DFGFRHLLNLADDPDAVVVFDADNLVDPNALEELN 103 (183)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHH
Confidence 889988864333 3488999999999988887754
No 34
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=92.78 E-value=0.97 Score=42.18 Aligned_cols=101 Identities=18% Similarity=0.161 Sum_probs=59.6
Q ss_pred cEEEEEccCCccchhhHHHHhhhhhccCCCC---CeEEEEEeCCCCCHHHHHHHhhCCCc-eeeeecCCCCCCCcCCCch
Q 013985 160 RTLIVVTPTYVRTFQTLHLTGVMHSLMLVPY---DLVWIVVEAGGVTNETASLIAKSKLR-TIHVGVDQKMPASWGGRHQ 235 (432)
Q Consensus 160 ~~IivVTPTy~R~~Q~a~LTRLa~TL~lVp~---~L~WIVVEd~~~t~~va~lL~~sgl~-y~HL~~~~~~p~~~~~r~~ 235 (432)
|.|-||.|+|..... |.++-+.|....+ ++.=|||.|++ ++.+.+++++.+.+ ..++-...+ . ...+.
T Consensus 1 p~vsIiIp~~Ne~~~---l~~~l~sl~~~~y~~~~~eiivVdd~s-~d~t~~i~~~~~~~~~~~i~~~~~--~--~~~G~ 72 (241)
T cd06427 1 PVYTILVPLYKEAEV---LPQLIASLSALDYPRSKLDVKLLLEED-DEETIAAARALRLPSIFRVVVVPP--S--QPRTK 72 (241)
T ss_pred CeEEEEEecCCcHHH---HHHHHHHHHhCcCCcccEEEEEEECCC-CchHHHHHHHhccCCCeeEEEecC--C--CCCch
Confidence 578899999998643 3344444433222 25556777765 55677777775431 222221111 0 01111
Q ss_pred hhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 013985 236 LEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 236 ~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdem 274 (432)
. ..+|.|++.. ..-+|.|.|+|..++...++++
T Consensus 73 ~--~a~n~g~~~a----~gd~i~~~DaD~~~~~~~l~~~ 105 (241)
T cd06427 73 P--KACNYALAFA----RGEYVVIYDAEDAPDPDQLKKA 105 (241)
T ss_pred H--HHHHHHHHhc----CCCEEEEEcCCCCCChHHHHHH
Confidence 1 3689999863 2347889999999999888663
No 35
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=91.36 E-value=1.8 Score=39.88 Aligned_cols=102 Identities=11% Similarity=0.206 Sum_probs=60.1
Q ss_pred cEEEEEccCCccchhhHHHHhhhhhccCCCC---CeEEEEEeCCC-CCHH-HHHHHh---hCCCceeeeecCCCCCCCcC
Q 013985 160 RTLIVVTPTYVRTFQTLHLTGVMHSLMLVPY---DLVWIVVEAGG-VTNE-TASLIA---KSKLRTIHVGVDQKMPASWG 231 (432)
Q Consensus 160 ~~IivVTPTy~R~~Q~a~LTRLa~TL~lVp~---~L~WIVVEd~~-~t~~-va~lL~---~sgl~y~HL~~~~~~p~~~~ 231 (432)
|.|-||-|||.... .|.+.-.+|....+ .+--|||+|+. .|.. +.++++ ..++..+|+..+++ .++
T Consensus 1 p~vSViIp~yNe~~---~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~--~G~- 74 (232)
T cd06437 1 PMVTVQLPVFNEKY---VVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRADR--TGY- 74 (232)
T ss_pred CceEEEEecCCcHH---HHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCCC--CCC-
Confidence 45789999998753 23344444433222 25667887643 2322 333332 23666777754321 111
Q ss_pred CCchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhcc
Q 013985 232 GRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (432)
Q Consensus 232 ~r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR~ 276 (432)
....+|.|++.. ..-+|.|.|.|...+-+.++++-.
T Consensus 75 -----k~~a~n~g~~~a----~~~~i~~~DaD~~~~~~~l~~~~~ 110 (232)
T cd06437 75 -----KAGALAEGMKVA----KGEYVAIFDADFVPPPDFLQKTPP 110 (232)
T ss_pred -----chHHHHHHHHhC----CCCEEEEEcCCCCCChHHHHHhhh
Confidence 123589999754 234899999999999888877543
No 36
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=90.77 E-value=1.1 Score=42.96 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=54.8
Q ss_pred CCccchhhHHHHhhhhhccCCCCCeEEEEEeCCCCC-HHHHHHHhh-CCCceeeeecCCCCCCCcCCCchhhHHHHHHHH
Q 013985 168 TYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGGVT-NETASLIAK-SKLRTIHVGVDQKMPASWGGRHQLEAKMRLRAL 245 (432)
Q Consensus 168 Ty~R~~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~~t-~~va~lL~~-sgl~y~HL~~~~~~p~~~~~r~~~~~~qRN~AL 245 (432)
||.+. ...|.++.+.|..- ....|||++++.+ ..+..++++ ..+.+.|.. +|. +.. .-+|.|+
T Consensus 2 tyn~~--~~~l~~~l~sl~~q--~~~iiVVDN~S~~~~~~~~~~~~~~~i~~i~~~--~N~-------G~a--~a~N~Gi 66 (281)
T TIGR01556 2 TFNPD--LEHLGELITSLPKQ--VDRIIAVDNSPHSDQPLKNARLRGQKIALIHLG--DNQ-------GIA--GAQNQGL 66 (281)
T ss_pred ccCcc--HHHHHHHHHHHHhc--CCEEEEEECcCCCcHhHHHHhccCCCeEEEECC--CCc-------chH--HHHHHHH
Confidence 66662 12333344444332 3678999999754 356666664 344454432 222 222 3599999
Q ss_pred HHHHhccCCeEEEEecCCCccchhhhhhh
Q 013985 246 RIVREEKLDGIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 246 ~~IR~~~~~GVVyFADDDNtYdl~LFdem 274 (432)
++..++.- -.|.|.|||...+.+.+++|
T Consensus 67 ~~a~~~~~-d~i~~lD~D~~~~~~~l~~l 94 (281)
T TIGR01556 67 DASFRRGV-QGVLLLDQDSRPGNAFLAAQ 94 (281)
T ss_pred HHHHHCCC-CEEEEECCCCCCCHHHHHHH
Confidence 99876533 46679999999987776654
No 37
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=90.63 E-value=2.1 Score=44.71 Aligned_cols=101 Identities=11% Similarity=0.137 Sum_probs=60.2
Q ss_pred CCCCcEEEEEccCCccchhhHHHHhhhhhccC--CCC-CeEEEEEeCCCCCHHHHHHHh---h--CCCceeeeecCCCCC
Q 013985 156 FKNPRTLIVVTPTYVRTFQTLHLTGVMHSLML--VPY-DLVWIVVEAGGVTNETASLIA---K--SKLRTIHVGVDQKMP 227 (432)
Q Consensus 156 ~~~~~~IivVTPTy~R~~Q~a~LTRLa~TL~l--Vp~-~L~WIVVEd~~~t~~va~lL~---~--sgl~y~HL~~~~~~p 227 (432)
....|.|=||-|+|.... .|.+.-+.|.. .|. .+.-|||+|+++ +.+.++++ + .++..+++. .
T Consensus 45 ~~~~P~vsVIIP~yNe~~---~l~~~l~sl~~q~yp~~~~eIiVVDd~St-D~T~~il~~~~~~~~~v~v~~~~--~--- 115 (439)
T TIGR03111 45 IGKLPDITIIIPVYNSED---TLFNCIESIYNQTYPIELIDIILANNQST-DDSFQVFCRAQNEFPGLSLRYMN--S--- 115 (439)
T ss_pred cCCCCCEEEEEEeCCChH---HHHHHHHHHHhcCCCCCCeEEEEEECCCC-hhHHHHHHHHHHhCCCeEEEEeC--C---
Confidence 356788999999999763 33333344332 232 255678877753 33444443 2 233333332 1
Q ss_pred CCcCCCchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhc
Q 013985 228 ASWGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (432)
Q Consensus 228 ~~~~~r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR 275 (432)
+.++ ...+|.|++..+ .=+|.|.|+|+..+.+.+++|-
T Consensus 116 ----~~Gk--a~AlN~gl~~s~----g~~v~~~DaD~~~~~d~L~~l~ 153 (439)
T TIGR03111 116 ----DQGK--AKALNAAIYNSI----GKYIIHIDSDGKLHKDAIKNMV 153 (439)
T ss_pred ----CCCH--HHHHHHHHHHcc----CCEEEEECCCCCcChHHHHHHH
Confidence 1222 235899997643 2378999999999998887753
No 38
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=90.59 E-value=0.33 Score=44.13 Aligned_cols=101 Identities=22% Similarity=0.258 Sum_probs=50.9
Q ss_pred cEEEEEccCCccchhhHHHHhhhhhccCC--CCCeEEEEEeCCCC--C-HHHHHHHhhCCC-ceeeeecCCCCCCCcCCC
Q 013985 160 RTLIVVTPTYVRTFQTLHLTGVMHSLMLV--PYDLVWIVVEAGGV--T-NETASLIAKSKL-RTIHVGVDQKMPASWGGR 233 (432)
Q Consensus 160 ~~IivVTPTy~R~~Q~a~LTRLa~TL~lV--p~~L~WIVVEd~~~--t-~~va~lL~~sgl-~y~HL~~~~~~p~~~~~r 233 (432)
|.|.||-|+|.+..... +.-+.|... + ++.-|||.|++. + +.+.++.++.+- ....+....+ .
T Consensus 1 P~v~Vvip~~~~~~~l~---~~l~sl~~~~~~-~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~-------~ 69 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLR---RCLESLLAQDYP-RLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRN-------P 69 (228)
T ss_dssp --EEEE--BSS-HHHHH---HHHHHHTTSHHH-TEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE-----------H
T ss_pred CEEEEEEEecCCHHHHH---HHHHHHHcCCCC-CeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCC-------C
Confidence 56899999999865332 222222221 4 688888887653 2 234455444432 2333322110 1
Q ss_pred c-hhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhc
Q 013985 234 H-QLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (432)
Q Consensus 234 ~-~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR 275 (432)
+ .....++|.|++.++ .-+|.|.|||...+...++++-
T Consensus 70 g~~~k~~a~n~~~~~~~----~d~i~~lD~D~~~~p~~l~~~~ 108 (228)
T PF13641_consen 70 GPGGKARALNEALAAAR----GDYILFLDDDTVLDPDWLERLL 108 (228)
T ss_dssp HHHHHHHHHHHHHHH-------SEEEEE-SSEEE-CHHHHHHH
T ss_pred CcchHHHHHHHHHHhcC----CCEEEEECCCcEECHHHHHHHH
Confidence 1 012246788988775 3499999999999988887743
No 39
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=90.55 E-value=3.5 Score=41.61 Aligned_cols=104 Identities=10% Similarity=0.118 Sum_probs=64.4
Q ss_pred CCcEEEEEccCCccchhhHH-HHhhhhhccCCCCCeEEEEEeCCCC--CHHHHHHHh-hCCCceeeeecCCCCCCCcCCC
Q 013985 158 NPRTLIVVTPTYVRTFQTLH-LTGVMHSLMLVPYDLVWIVVEAGGV--TNETASLIA-KSKLRTIHVGVDQKMPASWGGR 233 (432)
Q Consensus 158 ~~~~IivVTPTy~R~~Q~a~-LTRLa~TL~lVp~~L~WIVVEd~~~--t~~va~lL~-~sgl~y~HL~~~~~~p~~~~~r 233 (432)
..+.|-||-|+|.......+ +.++...+...+.+.-=|||+|+++ |.++.+-+. +.+....++..+.+.
T Consensus 4 ~~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~------- 76 (325)
T PRK10714 4 PIKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNY------- 76 (325)
T ss_pred CCCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCC-------
Confidence 45669999999997655443 3445555555555677899999874 444443333 335544444333221
Q ss_pred chhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 013985 234 HQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 234 ~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdem 274 (432)
+.+ ..+|.|+++- ..-+|.|.|+|..|+.+...+|
T Consensus 77 -G~~-~A~~~G~~~A----~gd~vv~~DaD~q~~p~~i~~l 111 (325)
T PRK10714 77 -GQH-SAIMAGFSHV----TGDLIITLDADLQNPPEEIPRL 111 (325)
T ss_pred -CHH-HHHHHHHHhC----CCCEEEEECCCCCCCHHHHHHH
Confidence 111 2477888664 2347889999999999887664
No 40
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=90.42 E-value=2.2 Score=42.84 Aligned_cols=107 Identities=21% Similarity=0.192 Sum_probs=62.8
Q ss_pred CCcEEEEEccCCccchhhHH-HHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhCCCceeeeecCCCCCCCcCCCchh
Q 013985 158 NPRTLIVVTPTYVRTFQTLH-LTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQL 236 (432)
Q Consensus 158 ~~~~IivVTPTy~R~~Q~a~-LTRLa~TL~lVp~~L~WIVVEd~~~t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r~~~ 236 (432)
..+.|-||-|+|.......+ |..+.+.+.. +.+.-.|||+|+++ ..+.+++++-+..+.+... .++..-.+++ .
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~-~~~~EIIVVDDgSt-D~T~~ia~~~~~~v~~~~~--~~~~~~~n~G-k 103 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLME-PLVDELIVIDSGST-DATAERAAAAGARVVSREE--ILPELPPRPG-K 103 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhcc-CCCcEEEEEeCCCc-cHHHHHHHHhcchhhcchh--hhhccccCCC-H
Confidence 46789999999998655443 3334443332 22467799998873 5667777777765444211 1111011222 2
Q ss_pred hHHHHHHHHHHHHhccCCeEEEEecCCCc-cchhhhhhh
Q 013985 237 EAKMRLRALRIVREEKLDGIVMFADDSNM-HSMELFDEI 274 (432)
Q Consensus 237 ~~~qRN~AL~~IR~~~~~GVVyFADDDNt-Ydl~LFdem 274 (432)
+ ...|.+++. ...-+|.|.|.|.. ++.+.+.+|
T Consensus 104 g-~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l 137 (306)
T PRK13915 104 G-EALWRSLAA----TTGDIVVFVDADLINFDPMFVPGL 137 (306)
T ss_pred H-HHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHH
Confidence 2 246677653 22358889999996 888766553
No 41
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=90.00 E-value=2.8 Score=36.47 Aligned_cols=98 Identities=15% Similarity=0.225 Sum_probs=56.9
Q ss_pred EEccCCccchhhHHHHhhhhhccCC-CCCeEEEEEeCCCCCH---HHHHHHhhCCCceeeeecCCCCCCCcCCCchhhHH
Q 013985 164 VVTPTYVRTFQTLHLTGVMHSLMLV-PYDLVWIVVEAGGVTN---ETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAK 239 (432)
Q Consensus 164 vVTPTy~R~~Q~a~LTRLa~TL~lV-p~~L~WIVVEd~~~t~---~va~lL~~sgl~y~HL~~~~~~p~~~~~r~~~~~~ 239 (432)
||.|+|.+..+.. +.-++|..- -.+.--|||+|++... .+.++.++......|+--. +.++ ....
T Consensus 1 ivip~~n~~~~l~---~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~ 69 (182)
T cd06420 1 LIITTYNRPEALE---LVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQE---DEGF-----RKAK 69 (182)
T ss_pred CEEeecCChHHHH---HHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcC---Ccch-----hHHH
Confidence 5889999865433 222222211 1256778999887422 2333444445555555321 1111 1123
Q ss_pred HHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhcc
Q 013985 240 MRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (432)
Q Consensus 240 qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR~ 276 (432)
.||.|++..+ .-+|.|.|+|...+...+++|.+
T Consensus 70 ~~n~g~~~a~----g~~i~~lD~D~~~~~~~l~~~~~ 102 (182)
T cd06420 70 IRNKAIAAAK----GDYLIFIDGDCIPHPDFIADHIE 102 (182)
T ss_pred HHHHHHHHhc----CCEEEEEcCCcccCHHHHHHHHH
Confidence 6888887643 35899999999999888777554
No 42
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=89.95 E-value=2.5 Score=38.39 Aligned_cols=100 Identities=20% Similarity=0.230 Sum_probs=58.4
Q ss_pred EEccCCccchhh-HHHHhhhhhccC-CCCCeEEEEEeCCCC--CHHHH-HHHhhCCCceeeeecCCCCCCCcCCCchhhH
Q 013985 164 VVTPTYVRTFQT-LHLTGVMHSLML-VPYDLVWIVVEAGGV--TNETA-SLIAKSKLRTIHVGVDQKMPASWGGRHQLEA 238 (432)
Q Consensus 164 vVTPTy~R~~Q~-a~LTRLa~TL~l-Vp~~L~WIVVEd~~~--t~~va-~lL~~sgl~y~HL~~~~~~p~~~~~r~~~~~ 238 (432)
||.|+|....-. .-|..+...+.. -+.++-.|||+|++. |..+. ++.++.+-..+++..+++. + ..
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~-------G-~~- 71 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNR-------G-KG- 71 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCC-------C-cH-
Confidence 578899864322 234454433321 224788999998874 33333 2333333322344333221 1 11
Q ss_pred HHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhcc
Q 013985 239 KMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (432)
Q Consensus 239 ~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR~ 276 (432)
..+|.|++... .=+|.|.|+|..|+.+.+++|-+
T Consensus 72 ~a~~~g~~~a~----gd~i~~ld~D~~~~~~~l~~l~~ 105 (211)
T cd04188 72 GAVRAGMLAAR----GDYILFADADLATPFEELEKLEE 105 (211)
T ss_pred HHHHHHHHHhc----CCEEEEEeCCCCCCHHHHHHHHH
Confidence 36888887753 35899999999999998877554
No 43
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=89.86 E-value=1.8 Score=37.65 Aligned_cols=96 Identities=22% Similarity=0.291 Sum_probs=55.6
Q ss_pred EEccCCccchhhHHHHhhhhhccCC---CCCeEEEEEeCCCCCHHHHHHHhhCCCce---eeeecCCCCCCCcCCCchhh
Q 013985 164 VVTPTYVRTFQTLHLTGVMHSLMLV---PYDLVWIVVEAGGVTNETASLIAKSKLRT---IHVGVDQKMPASWGGRHQLE 237 (432)
Q Consensus 164 vVTPTy~R~~Q~a~LTRLa~TL~lV---p~~L~WIVVEd~~~t~~va~lL~~sgl~y---~HL~~~~~~p~~~~~r~~~~ 237 (432)
||.|||.+... |-++-+.|..- ..+...|||+|++.. .+.+++++.+-.+ +++..+.+. +..
T Consensus 1 iii~~~n~~~~---l~~~l~sl~~~~~~~~~~eiivvd~~s~d-~~~~~~~~~~~~~~~~~~~~~~~n~-------G~~- 68 (185)
T cd04179 1 VVIPAYNEEEN---IPELVERLLAVLEEGYDYEIIVVDDGSTD-GTAEIARELAARVPRVRVIRLSRNF-------GKG- 68 (185)
T ss_pred CeecccChHhh---HHHHHHHHHHHhccCCCEEEEEEcCCCCC-ChHHHHHHHHHhCCCeEEEEccCCC-------Ccc-
Confidence 57899997633 22333333322 226888999988742 3344444333222 223332211 111
Q ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhcc
Q 013985 238 AKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (432)
Q Consensus 238 ~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR~ 276 (432)
..+|.|++..+. =+|.|.|+|..++...++++-.
T Consensus 69 -~a~n~g~~~a~g----d~i~~lD~D~~~~~~~l~~l~~ 102 (185)
T cd04179 69 -AAVRAGFKAARG----DIVVTMDADLQHPPEDIPKLLE 102 (185)
T ss_pred -HHHHHHHHHhcC----CEEEEEeCCCCCCHHHHHHHHH
Confidence 358888877543 4789999999999988877443
No 44
>PRK11204 N-glycosyltransferase; Provisional
Probab=88.81 E-value=4.7 Score=41.13 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=58.7
Q ss_pred CCcEEEEEccCCccchhhHHHHhhhhhccCC-CCCeEEEEEeCCCC--CHHHHHHHhhC--CCceeeeecCCCCCCCcCC
Q 013985 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLMLV-PYDLVWIVVEAGGV--TNETASLIAKS--KLRTIHVGVDQKMPASWGG 232 (432)
Q Consensus 158 ~~~~IivVTPTy~R~~Q~a~LTRLa~TL~lV-p~~L~WIVVEd~~~--t~~va~lL~~s--gl~y~HL~~~~~~p~~~~~ 232 (432)
+.|.|-||.|+|...... .+....+..- -+++-.|||+|+++ |.++.+-+.+. ++.+.|. +. +
T Consensus 52 ~~p~vsViIp~yne~~~i---~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~--~~-------n 119 (420)
T PRK11204 52 EYPGVSILVPCYNEGENV---EETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHL--AE-------N 119 (420)
T ss_pred CCCCEEEEEecCCCHHHH---HHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEc--CC-------C
Confidence 457899999999986433 3333333222 12688899999864 33332222221 2333332 11 1
Q ss_pred CchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhc
Q 013985 233 RHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (432)
Q Consensus 233 r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR 275 (432)
+++. ..+|.|++..+ .=+|.|.|+|+..+-+..++|-
T Consensus 120 ~Gka--~aln~g~~~a~----~d~i~~lDaD~~~~~d~L~~l~ 156 (420)
T PRK11204 120 QGKA--NALNTGAAAAR----SEYLVCIDGDALLDPDAAAYMV 156 (420)
T ss_pred CCHH--HHHHHHHHHcC----CCEEEEECCCCCCChhHHHHHH
Confidence 2222 36899987632 2478889999999988776653
No 45
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=86.41 E-value=9.3 Score=38.74 Aligned_cols=105 Identities=14% Similarity=0.195 Sum_probs=61.1
Q ss_pred CCCcEEEEEccCCccchhhHH-HHhhhhhcc----CCC-CCeEEEEEeCCCC--CHHHHHHHhhCC----CceeeeecCC
Q 013985 157 KNPRTLIVVTPTYVRTFQTLH-LTGVMHSLM----LVP-YDLVWIVVEAGGV--TNETASLIAKSK----LRTIHVGVDQ 224 (432)
Q Consensus 157 ~~~~~IivVTPTy~R~~Q~a~-LTRLa~TL~----lVp-~~L~WIVVEd~~~--t~~va~lL~~sg----l~y~HL~~~~ 224 (432)
.+.+.|-||-|+|........ |.++.+.+. .-+ .++--|||+|+++ |.++++-+.+.. ...+.+....
T Consensus 67 ~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~ 146 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR 146 (333)
T ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC
Confidence 477889999999997554432 233333332 122 2578899999974 455544443321 1222232222
Q ss_pred CCCCCcCCCchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 013985 225 KMPASWGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 225 ~~p~~~~~r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdem 274 (432)
| .+. + ..+|.|++.- ..-+|.|.|.|+.++.+.++++
T Consensus 147 N-------~G~-~-~A~~~Gi~~a----~gd~I~~~DaD~~~~~~~l~~l 183 (333)
T PTZ00260 147 N-------KGK-G-GAVRIGMLAS----RGKYILMVDADGATDIDDFDKL 183 (333)
T ss_pred C-------CCh-H-HHHHHHHHHc----cCCEEEEEeCCCCCCHHHHHHH
Confidence 2 122 1 2477888653 2347899999999998776553
No 46
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=84.93 E-value=7.6 Score=37.71 Aligned_cols=96 Identities=17% Similarity=0.208 Sum_probs=55.6
Q ss_pred EEccCCccchhhHHHHhhhhhcc-CCCCC--eEEEEEeCCCCCHHHHHHHh---hCCCc-eeeeecCCCCCCCcCCCchh
Q 013985 164 VVTPTYVRTFQTLHLTGVMHSLM-LVPYD--LVWIVVEAGGVTNETASLIA---KSKLR-TIHVGVDQKMPASWGGRHQL 236 (432)
Q Consensus 164 vVTPTy~R~~Q~a~LTRLa~TL~-lVp~~--L~WIVVEd~~~t~~va~lL~---~sgl~-y~HL~~~~~~p~~~~~r~~~ 236 (432)
||-|||.+. ...|.+.-++|. +.++. .--|||+|++....+..+++ ....+ .+.+..+.+ .+.
T Consensus 2 IIIp~~N~~--~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n--------~G~ 71 (299)
T cd02510 2 VIIIFHNEA--LSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKR--------EGL 71 (299)
T ss_pred EEEEEecCc--HHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCC--------CCH
Confidence 677889876 134444444443 33322 36899999976544444432 22222 222222211 122
Q ss_pred hHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 013985 237 EAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 237 ~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdem 274 (432)
...||.|++.- ..-+|.|.|+|-..+...+++|
T Consensus 72 -~~a~N~g~~~A----~gd~i~fLD~D~~~~~~wL~~l 104 (299)
T cd02510 72 -IRARIAGARAA----TGDVLVFLDSHCEVNVGWLEPL 104 (299)
T ss_pred -HHHHHHHHHHc----cCCEEEEEeCCcccCccHHHHH
Confidence 13699999874 2458999999999887777664
No 47
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=83.60 E-value=3 Score=37.64 Aligned_cols=104 Identities=10% Similarity=0.060 Sum_probs=55.5
Q ss_pred cEEEEEccCCccchhhH-HHHhhhhhccCCCCCeEEEEEeCCCC--CHH-HHHHHhhC-CCceeeeecCCCCCCCcCCCc
Q 013985 160 RTLIVVTPTYVRTFQTL-HLTGVMHSLMLVPYDLVWIVVEAGGV--TNE-TASLIAKS-KLRTIHVGVDQKMPASWGGRH 234 (432)
Q Consensus 160 ~~IivVTPTy~R~~Q~a-~LTRLa~TL~lVp~~L~WIVVEd~~~--t~~-va~lL~~s-gl~y~HL~~~~~~p~~~~~r~ 234 (432)
|.|-||.|+|....... -|..+.+. .-+ ++--|||.|++. |.. +.++.++. .+.+.++....+. +.
T Consensus 1 p~vsviip~~n~~~~l~~~L~sl~~q--~~~-~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~--g~---- 71 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQQ--DYP-KYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKV--GI---- 71 (196)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHhc--cCC-CeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcC--CC----
Confidence 45789999999854432 23333321 124 577778888864 222 22333332 2333333221111 10
Q ss_pred hhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhcc
Q 013985 235 QLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (432)
Q Consensus 235 ~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR~ 276 (432)
.....+.|.|++.. ..-+|.|.|+|..++...+++|-.
T Consensus 72 ~~~~~~~n~g~~~a----~~d~i~~~D~D~~~~~~~l~~l~~ 109 (196)
T cd02520 72 NPKVNNLIKGYEEA----RYDILVISDSDISVPPDYLRRMVA 109 (196)
T ss_pred CHhHHHHHHHHHhC----CCCEEEEECCCceEChhHHHHHHH
Confidence 01112467777643 234778999999999988887643
No 48
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=82.72 E-value=8.4 Score=37.67 Aligned_cols=99 Identities=20% Similarity=0.260 Sum_probs=66.3
Q ss_pred EEccCCccchh----hH---HHHhhhhhccCCCCCeEEEEEeCCCCC---HHHHHHHhhCCCc-eeeeecCCCCCCCcCC
Q 013985 164 VVTPTYVRTFQ----TL---HLTGVMHSLMLVPYDLVWIVVEAGGVT---NETASLIAKSKLR-TIHVGVDQKMPASWGG 232 (432)
Q Consensus 164 vVTPTy~R~~Q----~a---~LTRLa~TL~lVp~~L~WIVVEd~~~t---~~va~lL~~sgl~-y~HL~~~~~~p~~~~~ 232 (432)
||.|.+.+-.. +. -|.++.++.. +.++.=||||+++.. ..+.+++...+.. |.+..-... .| .
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~--~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~---~f-~ 75 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQS--DPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGE---PF-S 75 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCC--CCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCC---Cc-C
Confidence 67788887532 11 2445555433 447888999988742 5678888887776 554432210 11 1
Q ss_pred CchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhcc
Q 013985 233 RHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (432)
Q Consensus 233 r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR~ 276 (432)
+ ...||.|.+.- ..-+|.|.|.|-..+.+.++++.+
T Consensus 76 ~----a~arN~g~~~A----~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 76 R----AKARNIGAKYA----RGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred H----HHHHHHHHHHc----CCCEEEEEcCCeeeCHHHHHHHHH
Confidence 1 23699999775 455899999999999999998766
No 49
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=74.24 E-value=24 Score=39.73 Aligned_cols=101 Identities=14% Similarity=0.211 Sum_probs=63.1
Q ss_pred CCCcEEEEEccCCccchhhHHHHhhhhhccCCCC---CeEEEEEeCCCC--C---------------HHHHHHHhhCCCc
Q 013985 157 KNPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVPY---DLVWIVVEAGGV--T---------------NETASLIAKSKLR 216 (432)
Q Consensus 157 ~~~~~IivVTPTy~R~~Q~a~LTRLa~TL~lVp~---~L~WIVVEd~~~--t---------------~~va~lL~~sgl~ 216 (432)
...|.|=||-|||.......+ +.-..+....+ ++.-|||+|+++ | +.+.++-++.|+.
T Consensus 128 ~~~P~VsViIP~yNE~~~iv~--~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 205 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVA--TTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVN 205 (713)
T ss_pred ccCCeeEEEEcCCCCCHHHHH--HHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcE
Confidence 356788888899998654432 11122333333 478899999852 2 3566677777777
Q ss_pred eeeeecCCCCCCCcCCCchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 013985 217 TIHVGVDQKMPASWGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (432)
Q Consensus 217 y~HL~~~~~~p~~~~~r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFde 273 (432)
|.+- +++. ..+. .+.|.||++. ..-+|.|-|.|..-+-+..++
T Consensus 206 yi~r--~~n~------~~KA--gnLN~al~~a----~gd~Il~lDAD~v~~pd~L~~ 248 (713)
T TIGR03030 206 YITR--PRNV------HAKA--GNINNALKHT----DGELILIFDADHVPTRDFLQR 248 (713)
T ss_pred EEEC--CCCC------CCCh--HHHHHHHHhc----CCCEEEEECCCCCcChhHHHH
Confidence 6543 2111 0112 3689999753 224889999999988777766
No 50
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=70.73 E-value=33 Score=35.85 Aligned_cols=97 Identities=12% Similarity=0.231 Sum_probs=58.2
Q ss_pred CCcEEEEEccCCccchhhHHHHhhhhhccCC--CCCeEEEEEeCCCCCHHHHHHHhhC-----CCceeeeecCCCCCCCc
Q 013985 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLMLV--PYDLVWIVVEAGGVTNETASLIAKS-----KLRTIHVGVDQKMPASW 230 (432)
Q Consensus 158 ~~~~IivVTPTy~R~~Q~a~LTRLa~TL~lV--p~~L~WIVVEd~~~t~~va~lL~~s-----gl~y~HL~~~~~~p~~~ 230 (432)
..|.|-||-|+|...... .+.-+++... | ++-=|||.|+++. .+.+++++. ++.+.|.. .
T Consensus 73 ~~p~vsViIP~yNE~~~i---~~~l~sll~q~yp-~~eIivVdDgs~D-~t~~~~~~~~~~~~~v~vv~~~--~------ 139 (444)
T PRK14583 73 GHPLVSILVPCFNEGLNA---RETIHAALAQTYT-NIEVIAINDGSSD-DTAQVLDALLAEDPRLRVIHLA--H------ 139 (444)
T ss_pred CCCcEEEEEEeCCCHHHH---HHHHHHHHcCCCC-CeEEEEEECCCCc-cHHHHHHHHHHhCCCEEEEEeC--C------
Confidence 468899999999976443 2333333222 4 6888899888642 233333332 34444331 1
Q ss_pred CCCchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 013985 231 GGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 231 ~~r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdem 274 (432)
++++ ...+|.|++. ...-+|.+.|+|+..+-+..++|
T Consensus 140 -n~Gk--a~AlN~gl~~----a~~d~iv~lDAD~~~~~d~L~~l 176 (444)
T PRK14583 140 -NQGK--AIALRMGAAA----ARSEYLVCIDGDALLDKNAVPYL 176 (444)
T ss_pred -CCCH--HHHHHHHHHh----CCCCEEEEECCCCCcCHHHHHHH
Confidence 1222 2468888865 23458999999999988766553
No 51
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=60.42 E-value=9.6 Score=37.94 Aligned_cols=40 Identities=38% Similarity=0.530 Sum_probs=31.1
Q ss_pred eecccccccCCCCCCChHHhhHHHH--------HHHHHHHHHHhcCCC
Q 013985 117 VVGRHGIRIRPWPHPNPTEVMKAHK--------IIERVQREQRAHFGF 156 (432)
Q Consensus 117 ~vgrh~i~~rpwphp~p~e~~~ah~--------i~~rvQ~eq~~~~g~ 156 (432)
-|||-|.+|-|-|..--.+|.+|++ ||.|||+||.-.-|.
T Consensus 210 ~vGRvGLp~yPr~~~~~~~V~eay~fll~~g~~~~~rV~~EQ~~ilgd 257 (265)
T COG5494 210 AVGRVGLPIYPRSDSTVMRVLEAYNFLLENGDEIFNRVQKEQMEILGD 257 (265)
T ss_pred ccccccCCCCCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Confidence 4899999998777666677888875 677999999765443
No 52
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=60.29 E-value=34 Score=33.74 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=59.9
Q ss_pred CcEEEEEccCCccc-hhhHHHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhC---CCceeeeecCCCCCCCcCCCc
Q 013985 159 PRTLIVVTPTYVRT-FQTLHLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKS---KLRTIHVGVDQKMPASWGGRH 234 (432)
Q Consensus 159 ~~~IivVTPTy~R~-~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~~t~~va~lL~~s---gl~y~HL~~~~~~p~~~~~r~ 234 (432)
.+.|.+|.+||.|. .+...|..|++.--..-. ||+-|...++.+.+.++.. .+.+.+..- |. +|. +
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~----iv~vDn~s~d~~~~~~~~~~~~~v~~i~~~~--Nl--G~a--g 71 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQTYPDDV----IVVVDNGSTDGSLEALKARFFPNVRLIENGE--NL--GFA--G 71 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhcCCCCCcE----EEEccCCCCCCCHHHHHhhcCCcEEEEEcCC--Cc--cch--h
Confidence 57799999999995 577788878755544432 3344555566666666665 444444432 22 111 1
Q ss_pred hhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhcc
Q 013985 235 QLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (432)
Q Consensus 235 ~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR~ 276 (432)
+ =|.+.++.-.+..+ .|+|.++|=..+...+++|.+
T Consensus 72 g-----~n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~ 107 (305)
T COG1216 72 G-----FNRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLK 107 (305)
T ss_pred h-----hhHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHH
Confidence 1 23455554333222 788888886666666666443
No 53
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=59.24 E-value=1.2e+02 Score=31.05 Aligned_cols=110 Identities=19% Similarity=0.228 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEE--ccCCccchhhHHHHhhhhhccCCCCCeEEEEEeCCC--CCHHHHHHHhhCCCce
Q 013985 142 IIERVQREQRAHFGFKNPRTLIVV--TPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGG--VTNETASLIAKSKLRT 217 (432)
Q Consensus 142 i~~rvQ~eq~~~~g~~~~~~IivV--TPTy~R~~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~--~t~~va~lL~~sgl~y 217 (432)
-++++.+|.+...+....+.||+- |||+-++.+...|.+..+.+ .+...+ -|-+|... .+.+..+.|++.|+..
T Consensus 35 y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~~~l~~L~~~i~~~-~~~~~~-eitie~~p~~~t~e~l~~l~~~G~~r 112 (374)
T PRK05799 35 YIKALSKEIRNSTKNKKIKSIFIGGGTPTYLSLEALEILKETIKKL-NKKEDL-EFTVEGNPGTFTEEKLKILKSMGVNR 112 (374)
T ss_pred HHHHHHHHHHhhcCCCceeEEEECCCcccCCCHHHHHHHHHHHHhC-CCCCCC-EEEEEeCCCcCCHHHHHHHHHcCCCE
Confidence 355566665433222234667765 99998777766665555433 233233 45677543 5889999999999999
Q ss_pred eeeecCCCCCCCc--CCCchhhHHHHHHHHHHHHhccCC
Q 013985 218 IHVGVDQKMPASW--GGRHQLEAKMRLRALRIVREEKLD 254 (432)
Q Consensus 218 ~HL~~~~~~p~~~--~~r~~~~~~qRN~AL~~IR~~~~~ 254 (432)
.++++..--+... ..|... ..+-..|++.+++...+
T Consensus 113 vsiGvqS~~d~~L~~l~R~~~-~~~~~~ai~~l~~~g~~ 150 (374)
T PRK05799 113 LSIGLQAWQNSLLKYLGRIHT-FEEFLENYKLARKLGFN 150 (374)
T ss_pred EEEECccCCHHHHHHcCCCCC-HHHHHHHHHHHHHcCCC
Confidence 9999864212111 112111 22456788888887544
No 54
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=45.29 E-value=1.6e+02 Score=34.47 Aligned_cols=99 Identities=15% Similarity=0.215 Sum_probs=61.9
Q ss_pred CCcEEEEEccCCccchhhHHHHhhhhhccCCCC---CeEEEEEeCCCCCHHHHHHHhhCCCceeeeecCCCCCCCcCCCc
Q 013985 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVPY---DLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGRH 234 (432)
Q Consensus 158 ~~~~IivVTPTy~R~~Q~a~LTRLa~TL~lVp~---~L~WIVVEd~~~t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r~ 234 (432)
..|.|=||-|||.-..-... +.........| ++.=|||+|++ ++.+.++.++.|+.|.+-. + +.+
T Consensus 258 ~~P~VsViIPtYNE~~~vv~--~tI~a~l~~dYP~~k~EViVVDDgS-~D~t~~la~~~~v~yI~R~--~-------n~~ 325 (852)
T PRK11498 258 LWPTVDIFVPTYNEDLNVVK--NTIYASLGIDWPKDKLNIWILDDGG-REEFRQFAQEVGVKYIARP--T-------HEH 325 (852)
T ss_pred CCCcEEEEEecCCCcHHHHH--HHHHHHHhccCCCCceEEEEEeCCC-ChHHHHHHHHCCcEEEEeC--C-------CCc
Confidence 46889999999987533221 11222222322 35557788775 5667888888888775431 1 111
Q ss_pred hhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 013985 235 QLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (432)
Q Consensus 235 ~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFde 273 (432)
. ...+.|.||++.+ .=+|.|-|.|..-+-+..++
T Consensus 326 g-KAGnLN~aL~~a~----GEyIavlDAD~ip~pdfL~~ 359 (852)
T PRK11498 326 A-KAGNINNALKYAK----GEFVAIFDCDHVPTRSFLQM 359 (852)
T ss_pred c-hHHHHHHHHHhCC----CCEEEEECCCCCCChHHHHH
Confidence 1 1236899998742 23888999999988777665
No 55
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=43.07 E-value=70 Score=26.51 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=35.1
Q ss_pred cEEEEEccCCccchhhHHHHhhhhhc--cCCCCCeEEEEEeCCC----CCHHHHHHHhhCCCceeeeec
Q 013985 160 RTLIVVTPTYVRTFQTLHLTGVMHSL--MLVPYDLVWIVVEAGG----VTNETASLIAKSKLRTIHVGV 222 (432)
Q Consensus 160 ~~IivVTPTy~R~~Q~a~LTRLa~TL--~lVp~~L~WIVVEd~~----~t~~va~lL~~sgl~y~HL~~ 222 (432)
..+++|+|.- ..+|.|||+-| +|+| +.|++.. ....+.++|++.|+.++.+..
T Consensus 2 e~vl~I~~~~-----~~~~a~l~~~iGNrH~p-----~~i~~~~l~v~~d~~l~~~L~~lg~~~~~~~~ 60 (87)
T PF05194_consen 2 EEVLVIRPRD-----PKEMARLAYHIGNRHWP-----LFIEEDELYVPYDHVLEELLRKLGLEVEKVER 60 (87)
T ss_dssp EEEEEEE-SS-----HHHHHHHHHHHHHTT-------EEEETTEEEEE--HHHHHHHHHTT-EEEEEEE
T ss_pred ceEEEEeCCC-----HHHHHHHHHHHcCCccc-----eEEcCCEEEecCcHHHHHHHHHCCCccEEeee
Confidence 4588888843 34566888877 6776 6666664 246799999999999988854
No 56
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=40.07 E-value=14 Score=33.58 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=14.4
Q ss_pred CCeEEEEe-cCCCccchhh
Q 013985 253 LDGIVMFA-DDSNMHSMEL 270 (432)
Q Consensus 253 ~~GVVyFA-DDDNtYdl~L 270 (432)
..|++||+ |||++|+..+
T Consensus 100 ~kG~avFaS~d~sVy~a~~ 118 (124)
T PF14263_consen 100 VKGIAVFASDDDSVYQASL 118 (124)
T ss_dssp EEEEEEEEESSSGGGGEEE
T ss_pred eeEEEEEeeCChhhhccce
Confidence 47988887 6699998765
No 57
>PRK00523 hypothetical protein; Provisional
Probab=39.87 E-value=33 Score=28.62 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhe
Q 013985 36 AAIFWLVLHGLCCLISLVLGFRFSRL 61 (432)
Q Consensus 36 ~~~~~~~lh~~~c~~s~~lgfrfsr~ 61 (432)
+..+|++|=.+|-++.+++||=++|-
T Consensus 3 ~~~l~I~l~i~~li~G~~~Gffiark 28 (72)
T PRK00523 3 AIGLALGLGIPLLIVGGIIGYFVSKK 28 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999998874
No 58
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=39.63 E-value=1.5e+02 Score=30.47 Aligned_cols=110 Identities=14% Similarity=0.167 Sum_probs=67.3
Q ss_pred HHHHHHHHHHh---cCC--CCCCcEEEEE--ccCCccchhhHHHHhhhhhccCCCCCeEEEEEeCCC--CCHHHHHHHhh
Q 013985 142 IIERVQREQRA---HFG--FKNPRTLIVV--TPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGG--VTNETASLIAK 212 (432)
Q Consensus 142 i~~rvQ~eq~~---~~g--~~~~~~IivV--TPTy~R~~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~--~t~~va~lL~~ 212 (432)
.++.+.+|-+. .++ .....+||+- |||.-.+.|..+|....+-..-+..+. -|-+|... .+.+..+.|++
T Consensus 38 Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~-e~t~e~~p~~i~~e~l~~l~~ 116 (375)
T PRK05628 38 YLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGA-EVTTEANPESTSPEFFAALRA 116 (375)
T ss_pred HHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCC-EEEEEeCCCCCCHHHHHHHHH
Confidence 45555555543 222 2345788885 999988887777766654433333233 57788553 57889999999
Q ss_pred CCCceeeeecCCCCCC---CcCCCchhhHHHHHHHHHHHHhccCC
Q 013985 213 SKLRTIHVGVDQKMPA---SWGGRHQLEAKMRLRALRIVREEKLD 254 (432)
Q Consensus 213 sgl~y~HL~~~~~~p~---~~~~r~~~~~~qRN~AL~~IR~~~~~ 254 (432)
.|+...++++..--+. .....+..+ +=..|++.+++...+
T Consensus 117 ~G~~rvslGvQS~~~~~L~~l~R~~s~~--~~~~a~~~l~~~g~~ 159 (375)
T PRK05628 117 AGFTRVSLGMQSAAPHVLAVLDRTHTPG--RAVAAAREARAAGFE 159 (375)
T ss_pred cCCCEEEEecccCCHHHHHHcCCCCCHH--HHHHHHHHHHHcCCC
Confidence 9999999998642221 111122222 233577788876544
No 59
>cd00571 UreE UreE urease accessory protein. UreE is a metallochaperone assisting the insertion of a Ni2+ ion in the active site of urease, an important step in the in vivo assembly of urease, an enzyme that hydrolyses urea into ammonia and carbamic acid. The C-terminal region of UreE contains a histidine rich nickel binding site.
Probab=39.43 E-value=1.1e+02 Score=27.60 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=38.7
Q ss_pred CCcEEEEEccCCccchhhHHHHhhhhhc--cCCCCCeEEEEEeCCC----CCHHHHHHHhhCCCceeeeec
Q 013985 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSL--MLVPYDLVWIVVEAGG----VTNETASLIAKSKLRTIHVGV 222 (432)
Q Consensus 158 ~~~~IivVTPTy~R~~Q~a~LTRLa~TL--~lVp~~L~WIVVEd~~----~t~~va~lL~~sgl~y~HL~~ 222 (432)
.+..+++|+|.- ..+|.|+|+-| +|+| +-+++.. ....+.++|++.|++|.+.-.
T Consensus 74 ~~e~vl~i~~~~-----~~~~~~l~y~lGNrH~p-----l~i~~~~l~v~~D~~l~~ml~~lg~~~~~~~~ 134 (136)
T cd00571 74 APEDVLVITPKD-----MLELARLAYHLGNRHVP-----LQIEEDELYIPYDHVLEDMLRKLGVRYERVER 134 (136)
T ss_pred CCCcEEEEEcCC-----HHHHHHHHHHhcCCccc-----eEEeCCEEEEcCCHHHHHHHHHcCCeeEEEec
Confidence 345677788754 45788999877 5555 3445542 256799999999999987643
No 60
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=39.39 E-value=2.7e+02 Score=28.44 Aligned_cols=107 Identities=8% Similarity=-0.058 Sum_probs=55.2
Q ss_pred CCCCcEEEEEccCCccchhhHHHHhhhhhccCCC-CCeEEEEEeCCCC--CHHH-HHHHhhC-CCceeeeecCCCCCCCc
Q 013985 156 FKNPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVP-YDLVWIVVEAGGV--TNET-ASLIAKS-KLRTIHVGVDQKMPASW 230 (432)
Q Consensus 156 ~~~~~~IivVTPTy~R~~Q~a~LTRLa~TL~lVp-~~L~WIVVEd~~~--t~~v-a~lL~~s-gl~y~HL~~~~~~p~~~ 230 (432)
.+..|.|-||-|+|....+..+. -.+|..-. +++--|||.|++. |..+ .++.++. ++..+.+.-+ -+.+|
T Consensus 37 ~~~~p~VSViiP~~nee~~l~~~---L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~--~~~G~ 111 (373)
T TIGR03472 37 PRAWPPVSVLKPLHGDEPELYEN---LASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDA--RRHGP 111 (373)
T ss_pred CCCCCCeEEEEECCCCChhHHHH---HHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECC--CCCCC
Confidence 34578899999999986554432 22222221 2566677776643 2333 2332322 2222223111 12222
Q ss_pred CCCchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhc
Q 013985 231 GGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (432)
Q Consensus 231 ~~r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR 275 (432)
. ++ .++..+-+ ++...-+|.|.|+|..-+-+..++|-
T Consensus 112 ~--~K-----~~~l~~~~-~~a~ge~i~~~DaD~~~~p~~L~~lv 148 (373)
T TIGR03472 112 N--RK-----VSNLINML-PHARHDILVIADSDISVGPDYLRQVV 148 (373)
T ss_pred C--hH-----HHHHHHHH-HhccCCEEEEECCCCCcChhHHHHHH
Confidence 1 11 11212212 33345689999999999888887753
No 61
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=38.34 E-value=3e+02 Score=27.33 Aligned_cols=88 Identities=11% Similarity=0.101 Sum_probs=53.2
Q ss_pred ccCCCCCCChHHhhHHHHHHHHHHHHHHhcCCCCCCcEEEEEccCCccchhhHHHHhhhhhccCCCCCeEEEEEeCCCCC
Q 013985 124 RIRPWPHPNPTEVMKAHKIIERVQREQRAHFGFKNPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGGVT 203 (432)
Q Consensus 124 ~~rpwphp~p~e~~~ah~i~~rvQ~eq~~~~g~~~~~~IivVTPTy~R~~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~~t 203 (432)
..++|+|.++ ....+++++.+.....+|.++.+..|++|+.-. ..|..++..|.. +.. .-||+.++.-.
T Consensus 22 ~~~~~~~~~~----~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t-----~al~~~~~~l~~-~~~-~vlv~~~~~~~ 90 (363)
T TIGR02326 22 MLFDWCTWDS----DYNIVVEQIRQQLLALATAEEGYTSVLLQGSGT-----FAVEAVIGSAVP-KDG-KLLVVINGAYG 90 (363)
T ss_pred hCCCCCCCCh----HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCH-----HHHHHHHHhcCC-CCC-eEEEEeCChhh
Confidence 4568888765 355578888888888888865555666666543 234444444432 322 44555555433
Q ss_pred HHHHHHHhhCCCceeeeec
Q 013985 204 NETASLIAKSKLRTIHVGV 222 (432)
Q Consensus 204 ~~va~lL~~sgl~y~HL~~ 222 (432)
....++.++.|++.+.+..
T Consensus 91 ~~~~~~a~~~g~~~~~v~~ 109 (363)
T TIGR02326 91 ARIVQIAEYLGIPHHVVDT 109 (363)
T ss_pred HHHHHHHHHcCCceEEEeC
Confidence 3345667777877776654
No 62
>PRK01844 hypothetical protein; Provisional
Probab=35.45 E-value=40 Score=28.16 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhe
Q 013985 37 AIFWLVLHGLCCLISLVLGFRFSRL 61 (432)
Q Consensus 37 ~~~~~~lh~~~c~~s~~lgfrfsr~ 61 (432)
..+|+++=.+|-++.+++||=++|-
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888899999999999998874
No 63
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=33.95 E-value=42 Score=32.96 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=25.6
Q ss_pred HHHHHHHhc---cCCeEEEEecCCCccchhhhhhhcceee
Q 013985 243 RALRIVREE---KLDGIVMFADDSNMHSMELFDEIQNVKW 279 (432)
Q Consensus 243 ~AL~~IR~~---~~~GVVyFADDDNtYdl~LFdemR~tk~ 279 (432)
.||+.|.++ ..+.|+||+||-| |++.|..++....
T Consensus 177 ~al~~ll~~~~~~~~~v~~~GD~~n--D~~mf~~~~~~~g 214 (266)
T PRK10187 177 EAIAAFMQEAPFAGRTPVFVGDDLT--DEAGFAVVNRLGG 214 (266)
T ss_pred HHHHHHHHhcCCCCCeEEEEcCCcc--HHHHHHHHHhcCC
Confidence 467777665 3467999999888 8888988765443
No 64
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=33.67 E-value=26 Score=27.99 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhccCCeEEEEecCCCc--cch----hhhhhhcce
Q 013985 240 MRLRALRIVREEKLDGIVMFADDSNM--HSM----ELFDEIQNV 277 (432)
Q Consensus 240 qRN~AL~~IR~~~~~GVVyFADDDNt--Ydl----~LFdemR~t 277 (432)
|=-.||+|+ ...|+||.|-+++ |++ .||+|||..
T Consensus 5 qai~AL~hL----~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~ 44 (58)
T PF06858_consen 5 QAITALAHL----ADAILFIIDPSEQCGYSIEEQLSLFKEIKPL 44 (58)
T ss_dssp HHHHGGGGT-----SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhh----cceEEEEEcCCCCCCCCHHHHHHHHHHHHHH
Confidence 555677665 4689999999988 764 589998854
No 65
>PF14773 VIGSSK: Helicase-associated putative binding domain, C-terminal
Probab=31.49 E-value=32 Score=27.87 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=18.4
Q ss_pred CCHHHHHHHhhCCCceeeeec
Q 013985 202 VTNETASLIAKSKLRTIHVGV 222 (432)
Q Consensus 202 ~t~~va~lL~~sgl~y~HL~~ 222 (432)
+...+..||...|+.|+|.+-
T Consensus 24 k~d~I~aiL~~~gV~YtH~N~ 44 (61)
T PF14773_consen 24 KHDPIQAILASAGVEYTHSNQ 44 (61)
T ss_pred cccHHHHHHhhcceeeeecCc
Confidence 456799999999999999975
No 66
>PF15050 SCIMP: SCIMP protein
Probab=31.26 E-value=40 Score=30.89 Aligned_cols=18 Identities=44% Similarity=0.938 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 013985 39 FWLVLHGLCCLISLVLGF 56 (432)
Q Consensus 39 ~~~~lh~~~c~~s~~lgf 56 (432)
||++|-...-++|++||+
T Consensus 8 FWiiLAVaII~vS~~lgl 25 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGL 25 (133)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 888888888888888885
No 67
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=30.44 E-value=2.9e+02 Score=28.34 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=61.4
Q ss_pred CCCcEEEEE--ccCCccchhhHHHHhhhhhccCCCCCeEEEEEeCCC--CCHHHHHHHhhCCCceeeeecCCCCCCC--c
Q 013985 157 KNPRTLIVV--TPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGG--VTNETASLIAKSKLRTIHVGVDQKMPAS--W 230 (432)
Q Consensus 157 ~~~~~IivV--TPTy~R~~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~--~t~~va~lL~~sgl~y~HL~~~~~~p~~--~ 230 (432)
...++||+- |||.-.+.|..+|.....-. ++ .-.-|-+|..+ .+.+..+.|++.|+....+++..--+.. .
T Consensus 50 ~~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~--~~-~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~ 126 (350)
T PRK08446 50 EKIESVFIGGGTPSTVSAKFYEPIFEIISPY--LS-KDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKF 126 (350)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHh--cC-CCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHH
Confidence 355788885 99999888888777666544 44 33467889654 4789999999999999999986411110 1
Q ss_pred CCCchhhHHHHHHHHHHHHhccCC
Q 013985 231 GGRHQLEAKMRLRALRIVREEKLD 254 (432)
Q Consensus 231 ~~r~~~~~~qRN~AL~~IR~~~~~ 254 (432)
..|... ..+=..|++.+|+...+
T Consensus 127 lgR~~~-~~~~~~ai~~lr~~g~~ 149 (350)
T PRK08446 127 LGRIHS-QKQIIKAIENAKKAGFE 149 (350)
T ss_pred cCCCCC-HHHHHHHHHHHHHcCCC
Confidence 122111 11334577788877544
No 68
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.40 E-value=54 Score=27.33 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhee
Q 013985 38 IFWLVLHGLCCLISLVLGFRFSRLV 62 (432)
Q Consensus 38 ~~~~~lh~~~c~~s~~lgfrfsr~~ 62 (432)
+.|+++=.+|-++.+++||=+||=.
T Consensus 4 ~lail~ivl~ll~G~~~G~fiark~ 28 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFIARKQ 28 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888899999999999988743
No 69
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=28.12 E-value=6.7e+02 Score=25.71 Aligned_cols=98 Identities=20% Similarity=0.219 Sum_probs=59.6
Q ss_pred CCCCcEEEE--EccCCccchhhHHHHhhhhhccCCCCCeEEEEEeCCC--CCHHHHHHHhhCCCceeeeecCCCCCCCc-
Q 013985 156 FKNPRTLIV--VTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGG--VTNETASLIAKSKLRTIHVGVDQKMPASW- 230 (432)
Q Consensus 156 ~~~~~~Iiv--VTPTy~R~~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~--~t~~va~lL~~sgl~y~HL~~~~~~p~~~- 230 (432)
.+.-+.||+ =|||.-.+.+..+|.+..+-.-.+....- |-+|... .+.+..+.|++.|+...++++..--+...
T Consensus 49 ~~~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~~~~e-it~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~ 127 (377)
T PRK08599 49 FDKLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLSGLEE-FTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLK 127 (377)
T ss_pred CCceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCCCCCE-EEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 345566776 58997666666666555544322332223 4567543 47899999999999999999864222111
Q ss_pred -CCCchhhHHHHHHHHHHHHhccCCe
Q 013985 231 -GGRHQLEAKMRLRALRIVREEKLDG 255 (432)
Q Consensus 231 -~~r~~~~~~qRN~AL~~IR~~~~~G 255 (432)
-.|+. ...+...|++.+++...+.
T Consensus 128 ~l~r~~-~~~~~~~~i~~l~~~g~~~ 152 (377)
T PRK08599 128 KIGRTH-NEEDVYEAIANAKKAGFDN 152 (377)
T ss_pred HcCCCC-CHHHHHHHHHHHHHcCCCc
Confidence 11211 1236778899998876543
No 70
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=26.26 E-value=4.1e+02 Score=28.66 Aligned_cols=89 Identities=16% Similarity=0.266 Sum_probs=52.8
Q ss_pred cEEEEE--ccCCccchhhHHHHhhhhhccCC-CCCeEEEEE---eCCCCCHHHHHHHhhCCCceeeeecCCCCCC---Cc
Q 013985 160 RTLIVV--TPTYVRTFQTLHLTGVMHSLMLV-PYDLVWIVV---EAGGVTNETASLIAKSKLRTIHVGVDQKMPA---SW 230 (432)
Q Consensus 160 ~~IivV--TPTy~R~~Q~a~LTRLa~TL~lV-p~~L~WIVV---Ed~~~t~~va~lL~~sgl~y~HL~~~~~~p~---~~ 230 (432)
+.++++ ++|..+ ..+..|++.|.-- |-++.|..- ++-..+.+..++|+++|+....+++...-+. ..
T Consensus 241 ~~~~~~Dd~f~~~~----~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~ 316 (497)
T TIGR02026 241 GFFILADEEPTINR----KKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHF 316 (497)
T ss_pred CEEEEEecccccCH----HHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHh
Confidence 345554 445433 2455666666433 235888642 2222367889999999999999998753221 11
Q ss_pred CCCchhhHHHHHHHHHHHHhccCC
Q 013985 231 GGRHQLEAKMRLRALRIVREEKLD 254 (432)
Q Consensus 231 ~~r~~~~~~qRN~AL~~IR~~~~~ 254 (432)
.+.+. ..+-..|++.++++...
T Consensus 317 ~K~~t--~~~~~~ai~~l~~~Gi~ 338 (497)
T TIGR02026 317 RKGTT--TSTNKEAIRLLRQHNIL 338 (497)
T ss_pred cCCCC--HHHHHHHHHHHHHCCCc
Confidence 12222 23566789999998653
No 71
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=26.06 E-value=4.6e+02 Score=27.40 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=55.9
Q ss_pred EEccCCccchhhHHHHhhhhhccCCC---CCeEEEEEeCCCCCHHHHHHHhhCCCceeeeecCC----CCC--CCcCCCc
Q 013985 164 VVTPTYVRTFQTLHLTGVMHSLMLVP---YDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQ----KMP--ASWGGRH 234 (432)
Q Consensus 164 vVTPTy~R~~Q~a~LTRLa~TL~lVp---~~L~WIVVEd~~~t~~va~lL~~sgl~y~HL~~~~----~~p--~~~~~r~ 234 (432)
||=.||.|+. +|.|.-.+|.... .+..=||..|++..+ ++++++.-+...+|+.... ++. ..+..-.
T Consensus 4 Vlv~ayNRp~---~l~r~LesLl~~~p~~~~~~liIs~DG~~~~-~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~ 79 (334)
T cd02514 4 VLVIACNRPD---YLRRMLDSLLSYRPSAEKFPIIVSQDGGYEE-VADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGYY 79 (334)
T ss_pred EEEEecCCHH---HHHHHHHHHHhccccCCCceEEEEeCCCchH-HHHHHHhhccccEEEEcccccccccCcccccchhh
Confidence 3445677752 3445555555441 135567888887543 5566655533344543211 111 0000000
Q ss_pred hhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhcce
Q 013985 235 QLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQNV 277 (432)
Q Consensus 235 ~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR~t 277 (432)
.. .+..-.||.++=++...+-|.|-|||-.-+..+|+-|.+.
T Consensus 80 ~i-a~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~ 121 (334)
T cd02514 80 RI-ARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQAT 121 (334)
T ss_pred HH-HHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHH
Confidence 00 1112347777755545677788888888888876555443
No 72
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=25.98 E-value=4.9e+02 Score=27.62 Aligned_cols=91 Identities=14% Similarity=0.187 Sum_probs=55.2
Q ss_pred CCcEEEEEccCCccchhhHHHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhCCCceeeeecCCCCCC---CcCCCc
Q 013985 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPA---SWGGRH 234 (432)
Q Consensus 158 ~~~~IivVTPTy~R~~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~~t~~va~lL~~sgl~y~HL~~~~~~p~---~~~~r~ 234 (432)
..+.|+++-.|..- -...+..|+..|... .+.|..--....+.++.+.|+++|+...++++...-+. ...+..
T Consensus 245 ~~~~i~f~Dd~f~~--~~~~~~~l~~~l~~~--~i~~~~~~~~~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~ 320 (472)
T TIGR03471 245 EVREFFFDDDTFTD--DKPRAEEIARKLGPL--GVTWSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGL 320 (472)
T ss_pred CCcEEEEeCCCCCC--CHHHHHHHHHHHhhc--CceEEEEecCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCC
Confidence 34678887766542 122445555555544 47786432334578899999999999999998753221 111111
Q ss_pred hhhHHHHHHHHHHHHhccCC
Q 013985 235 QLEAKMRLRALRIVREEKLD 254 (432)
Q Consensus 235 ~~~~~qRN~AL~~IR~~~~~ 254 (432)
.. .+-..+++.++++...
T Consensus 321 ~~--~~~~~~i~~~~~~Gi~ 338 (472)
T TIGR03471 321 TV--EIARRFTRDCHKLGIK 338 (472)
T ss_pred CH--HHHHHHHHHHHHCCCe
Confidence 12 2455678888887543
No 73
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=22.80 E-value=46 Score=26.90 Aligned_cols=13 Identities=38% Similarity=0.767 Sum_probs=11.5
Q ss_pred ccceecCCCCeEE
Q 013985 316 QGPACNSSNNLVG 328 (432)
Q Consensus 316 EGP~cn~sgkVvG 328 (432)
=||++|.+|+|+|
T Consensus 107 Ggpv~~~~G~vvG 119 (120)
T PF13365_consen 107 GGPVFDSDGRVVG 119 (120)
T ss_dssp TSEEEETTSEEEE
T ss_pred eHhEECCCCEEEe
Confidence 4799999999998
No 74
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=22.70 E-value=5.9e+02 Score=25.52 Aligned_cols=101 Identities=17% Similarity=0.170 Sum_probs=60.0
Q ss_pred EEccCCccchhhHHHHhhh-hhccCCCCCeEEEEEeCCCC--CHHHHHHHhh-CCCceeeeecCCCCCCCcCCCchhhHH
Q 013985 164 VVTPTYVRTFQTLHLTGVM-HSLMLVPYDLVWIVVEAGGV--TNETASLIAK-SKLRTIHVGVDQKMPASWGGRHQLEAK 239 (432)
Q Consensus 164 vVTPTy~R~~Q~a~LTRLa-~TL~lVp~~L~WIVVEd~~~--t~~va~lL~~-sgl~y~HL~~~~~~p~~~~~r~~~~~~ 239 (432)
||-|||.--.-.+-+|||- .++..-.-+.-=|+|+|++. |-++++.|++ -|..-.-|-..+ .+. +.+.
T Consensus 7 vilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~------~kl-GLgt- 78 (238)
T KOG2978|consen 7 VILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRT------KKL-GLGT- 78 (238)
T ss_pred EEeccccCCCCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEecc------Ccc-cchH-
Confidence 7889999766666778875 44443322456689999974 7889988885 344333331111 111 1211
Q ss_pred HHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhcc
Q 013985 240 MRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (432)
Q Consensus 240 qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR~ 276 (432)
-=.++| +|...-.+..+|.|=.+..+..-||=+
T Consensus 79 Ay~hgl----~~a~g~fiviMDaDlsHhPk~ipe~i~ 111 (238)
T KOG2978|consen 79 AYIHGL----KHATGDFIVIMDADLSHHPKFIPEFIR 111 (238)
T ss_pred HHHhhh----hhccCCeEEEEeCccCCCchhHHHHHH
Confidence 112222 334445778899999998888766433
No 75
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=22.04 E-value=5.6e+02 Score=24.50 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=21.9
Q ss_pred HHHHHHHhc---cCCeEEEEecCCCccchhhhhhhcc
Q 013985 243 RALRIVREE---KLDGIVMFADDSNMHSMELFDEIQN 276 (432)
Q Consensus 243 ~AL~~IR~~---~~~GVVyFADDDNtYdl~LFdemR~ 276 (432)
.|+++|-+. ..+-+||++||-| |...|...++
T Consensus 170 ~a~~~~~~~~~~~~~~~i~iGD~~~--D~~~~~~~~~ 204 (244)
T TIGR00685 170 EIVKRLLWHQPGSGISPVYLGDDIT--DEDAFRVVNN 204 (244)
T ss_pred HHHHHHHHhcccCCCceEEEcCCCc--HHHHHHHHhc
Confidence 355555443 2356899999877 8888988844
No 76
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=21.45 E-value=1.6e+02 Score=31.44 Aligned_cols=61 Identities=23% Similarity=0.412 Sum_probs=35.3
Q ss_pred eeeccccccc--------------CCCCC-CChHHhhHHHHHHHHHHHHH--HhcC---C------CCCCcEEEEEccCC
Q 013985 116 VVVGRHGIRI--------------RPWPH-PNPTEVMKAHKIIERVQREQ--RAHF---G------FKNPRTLIVVTPTY 169 (432)
Q Consensus 116 v~vgrh~i~~--------------rpwph-p~p~e~~~ah~i~~rvQ~eq--~~~~---g------~~~~~~IivVTPTy 169 (432)
|.+-|||||= ++||. |-|..=+..||...-+...+ |..| | ......|||.+-.+
T Consensus 35 vilsRHg~R~P~~~~~~~l~~~t~~~Wp~w~~~~G~LT~~G~~~~~~~G~~~r~~~~~~~ll~~~~cp~~~~v~~~a~~~ 114 (413)
T PRK10173 35 LMMSRHNLRAPLANNGSVLEQSTPNAWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAQQGLVKSGECPPPDTVYAYANSL 114 (413)
T ss_pred EEEeecccCCCCCCcchhhhhcCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCeEEEEeCCc
Confidence 8889999983 34554 22333355555443222222 2211 1 22456799999999
Q ss_pred ccchhhH
Q 013985 170 VRTFQTL 176 (432)
Q Consensus 170 ~R~~Q~a 176 (432)
.|+.|-+
T Consensus 115 ~RT~~Sa 121 (413)
T PRK10173 115 QRTVATA 121 (413)
T ss_pred hHHHHHH
Confidence 9988777
No 77
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=21.41 E-value=2.2e+02 Score=27.68 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=42.2
Q ss_pred CeEEEEEeCCCC--CHHHHHHHhhCCCceeeeecCCC----CCCCcCCCchhhHHHHHHHHHHHHhc---cCCeEEEEec
Q 013985 191 DLVWIVVEAGGV--TNETASLIAKSKLRTIHVGVDQK----MPASWGGRHQLEAKMRLRALRIVREE---KLDGIVMFAD 261 (432)
Q Consensus 191 ~L~WIVVEd~~~--t~~va~lL~~sgl~y~HL~~~~~----~p~~~~~r~~~~~~qRN~AL~~IR~~---~~~GVVyFAD 261 (432)
.+.+.|-++... ...+...|+..|+...-+..... +|. . ..+-.||+||.+. ..+-||.++|
T Consensus 119 k~sy~~~~~~~~~~~~~i~~~l~~~~l~~~~i~s~~~~ldilP~------~---a~K~~Al~~L~~~~~~~~~~vl~aGD 189 (247)
T PF05116_consen 119 KISYYVDPDDSADILEEIRARLRQRGLRVNVIYSNGRDLDILPK------G---ASKGAALRYLMERWGIPPEQVLVAGD 189 (247)
T ss_dssp CECEEEETTSHCHHHHHHHHHHHCCTCEEEEEECTCCEEEEEET------T----SHHHHHHHHHHHHT--GGGEEEEES
T ss_pred eEEEEEecccchhHHHHHHHHHHHcCCCeeEEEccceeEEEccC------C---CCHHHHHHHHHHHhCCCHHHEEEEeC
Confidence 455666554432 34677788888886433321111 221 1 2467899999876 3456777777
Q ss_pred CCCccchhhh
Q 013985 262 DSNMHSMELF 271 (432)
Q Consensus 262 DDNtYdl~LF 271 (432)
..| |+++|
T Consensus 190 SgN--D~~mL 197 (247)
T PF05116_consen 190 SGN--DLEML 197 (247)
T ss_dssp SGG--GHHHH
T ss_pred CCC--cHHHH
Confidence 777 88888
No 78
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=21.21 E-value=5.7e+02 Score=27.90 Aligned_cols=118 Identities=13% Similarity=0.100 Sum_probs=70.1
Q ss_pred CCCcEEEEEccCCccchhhHHHHhhhhhccCC----CCCeEEEEEeCCC--CCH-------HHHHHHhhC-CCceeeeec
Q 013985 157 KNPRTLIVVTPTYVRTFQTLHLTGVMHSLMLV----PYDLVWIVVEAGG--VTN-------ETASLIAKS-KLRTIHVGV 222 (432)
Q Consensus 157 ~~~~~IivVTPTy~R~~Q~a~LTRLa~TL~lV----p~~L~WIVVEd~~--~t~-------~va~lL~~s-gl~y~HL~~ 222 (432)
.+..+|.+|-|-..| +...+.+.++.+..+ ..+++=+||=..+ .+. .+.++-++. +..+.-+.+
T Consensus 244 ~~~~~V~iIvPl~~r--~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~ 321 (499)
T PF05679_consen 244 TESTRVHIIVPLSGR--EADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISV 321 (499)
T ss_pred cCCCEEEEEEEecCc--cHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEe
Confidence 355899999999998 233333333333322 3356666665432 121 223333343 334455544
Q ss_pred CCCCCCCcCCCchhhHHHHHHHHHHH-HhccCCeEEEEecCCCccchhhhhhhcc--eeeeeEE-EeeEE
Q 013985 223 DQKMPASWGGRHQLEAKMRLRALRIV-REEKLDGIVMFADDSNMHSMELFDEIQN--VKWFGAV-SVGIL 288 (432)
Q Consensus 223 ~~~~p~~~~~r~~~~~~qRN~AL~~I-R~~~~~GVVyFADDDNtYdl~LFdemR~--tk~vgvW-PVGlv 288 (432)
++ .. --|-+||+-. +....+-+|+|+|-|=.+..++++.+|. ++..-|+ |+-+-
T Consensus 322 ~~---~~---------fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~g~qvy~PI~Fs 379 (499)
T PF05679_consen 322 KT---GE---------FSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIPGKQVYFPIVFS 379 (499)
T ss_pred cC---CC---------ccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhcCcEEEEeeecc
Confidence 41 11 1366777755 3446789999999999999999999875 5555443 77764
No 79
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.13 E-value=78 Score=35.73 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEEccCCccchhhHHHHhhhhhccCCCCCeEEEEEe---CCC-CCHHHHHHHhhCC
Q 013985 142 IIERVQREQRAHFGFKNPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVE---AGG-VTNETASLIAKSK 214 (432)
Q Consensus 142 i~~rvQ~eq~~~~g~~~~~~IivVTPTy~R~~Q~a~LTRLa~TL~lVp~~L~WIVVE---d~~-~t~~va~lL~~sg 214 (432)
|++.+|.-+... .-.+-+--+||-||..=..|.+|. +|+| +. ++||||=- -|+ +..+-|+|=+..+
T Consensus 195 iVq~Lq~m~~ki-~Rs~G~~ALVivPTREL~~Q~y~~---~qKL--l~-~~hWIVPg~lmGGEkkKSEKARLRKGiN 264 (708)
T KOG0348|consen 195 IVQSLQAMEPKI-QRSDGPYALVIVPTRELALQIYET---VQKL--LK-PFHWIVPGVLMGGEKKKSEKARLRKGIN 264 (708)
T ss_pred HHHHHHhcCccc-cccCCceEEEEechHHHHHHHHHH---HHHH--hc-CceEEeeceeecccccccHHHHHhcCce
Confidence 444555433221 123556778999999989999884 5554 45 69999743 334 3556666655444
No 80
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=20.95 E-value=1.5e+02 Score=22.32 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 013985 235 QLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 235 ~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdem 274 (432)
+.+...=+.++.+.+++....+......+|..++++|+.+
T Consensus 41 Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~ 80 (83)
T PF00583_consen 41 GIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKL 80 (83)
T ss_dssp SHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHT
T ss_pred CCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHc
Confidence 4455566778888888888999999999999999999865
No 81
>PRK07094 biotin synthase; Provisional
Probab=20.63 E-value=8.5e+02 Score=24.24 Aligned_cols=76 Identities=9% Similarity=0.082 Sum_probs=46.6
Q ss_pred HHHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhCCCceeeeecCCCCCCCcCCC-chhhHHHHHHHHHHHHhccC
Q 013985 176 LHLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGR-HQLEAKMRLRALRIVREEKL 253 (432)
Q Consensus 176 a~LTRLa~TL~lVp~~L~WIVVEd~~~t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r-~~~~~~qRN~AL~~IR~~~~ 253 (432)
.++..+...++..+ ++ .|-+.-+..+.+..+.|++.|+...++++.+--+..++.- +.....++..+++++++...
T Consensus 103 ~~l~~l~~~i~~~~-~l-~i~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi 179 (323)
T PRK07094 103 EKIADIIKEIKKEL-DV-AITLSLGERSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGY 179 (323)
T ss_pred HHHHHHHHHHHccC-Cc-eEEEecCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Confidence 35556666665432 33 2333445578899999999999988888865323211110 01123478899999998754
No 82
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=20.45 E-value=5.5e+02 Score=26.58 Aligned_cols=141 Identities=13% Similarity=0.216 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEE--EccCCccchhhHHHHhhhhhccCCCCCeEEEEEeCCC--CCHHHHHHHhhCCCc
Q 013985 141 KIIERVQREQRAHFGFKNPRTLIV--VTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGG--VTNETASLIAKSKLR 216 (432)
Q Consensus 141 ~i~~rvQ~eq~~~~g~~~~~~Iiv--VTPTy~R~~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~--~t~~va~lL~~sgl~ 216 (432)
..++.+.+|.+.. +.+...+||+ =|||.-.+.|..+|....+.. ++. .-=|-+|..+ .+.+..+.|++.|++
T Consensus 40 ~~~~~l~~ei~~~-~~~~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~--~~~-~~eitiE~nP~~lt~e~l~~lk~~G~n 115 (353)
T PRK05904 40 DFLKNIKMHIKNF-KIKQFKTIYLGGGTPNCLNDQLLDILLSTIKPY--VDN-NCEFTIECNPELITQSQINLLKKNKVN 115 (353)
T ss_pred HHHHHHHHHHHHh-cCCCeEEEEECCCccccCCHHHHHHHHHHHHHh--cCC-CCeEEEEeccCcCCHHHHHHHHHcCCC
Confidence 3566666665432 2244577886 699998888877766665443 342 2236788654 478999999999999
Q ss_pred eeeeecCCCCCC---CcCCCchhhHHHHHHHHHHHHhccCCeE---EEEe-cCCCc----cchhhhhhhcceeeeeEEEe
Q 013985 217 TIHVGVDQKMPA---SWGGRHQLEAKMRLRALRIVREEKLDGI---VMFA-DDSNM----HSMELFDEIQNVKWFGAVSV 285 (432)
Q Consensus 217 y~HL~~~~~~p~---~~~~r~~~~~~qRN~AL~~IR~~~~~GV---VyFA-DDDNt----Ydl~LFdemR~tk~vgvWPV 285 (432)
..++++..--+. .....+.. .+=..|++.+++....-| +.|+ ...+. -++++..++. ...+++.+.
T Consensus 116 risiGvQS~~d~vL~~l~R~~~~--~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~-p~~is~y~L 192 (353)
T PRK05904 116 RISLGVQSMNNNILKQLNRTHTI--QDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFILKHK-INHISFYSL 192 (353)
T ss_pred EEEEecccCCHHHHHHcCCCCCH--HHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHHhcC-CCEEEEEee
Confidence 999998642111 11111222 133467888888754322 3343 11111 2233333332 345666666
Q ss_pred eEE
Q 013985 286 GIL 288 (432)
Q Consensus 286 Glv 288 (432)
-+.
T Consensus 193 ~~~ 195 (353)
T PRK05904 193 EIK 195 (353)
T ss_pred Eec
Confidence 554
No 83
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=20.26 E-value=4.3e+02 Score=27.90 Aligned_cols=95 Identities=20% Similarity=0.153 Sum_probs=59.2
Q ss_pred CcEEEE--EccCCccchhhHHHHhhhhhccCCCCCeEEEEEeCCC--CCHHHHHHHhhCCCceeeeecCCCCCCC--cCC
Q 013985 159 PRTLIV--VTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGG--VTNETASLIAKSKLRTIHVGVDQKMPAS--WGG 232 (432)
Q Consensus 159 ~~~Iiv--VTPTy~R~~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~--~t~~va~lL~~sgl~y~HL~~~~~~p~~--~~~ 232 (432)
...||+ =|||.--+.|..+|.........+...-..|-+|... .+.+..+.|++.|+...++++..--+.. ...
T Consensus 92 i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~ 171 (430)
T PRK08208 92 FASFAVGGGTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALH 171 (430)
T ss_pred eeEEEEcCCccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhC
Confidence 446665 3999977777776666554433343113468899654 5789999999999999999986421211 011
Q ss_pred CchhhHHHHHHHHHHHHhccCC
Q 013985 233 RHQLEAKMRLRALRIVREEKLD 254 (432)
Q Consensus 233 r~~~~~~qRN~AL~~IR~~~~~ 254 (432)
|+.. ..+=..|++.+++...+
T Consensus 172 R~~~-~~~~~~ai~~l~~~g~~ 192 (430)
T PRK08208 172 RPQK-RADVHQALEWIRAAGFP 192 (430)
T ss_pred CCCC-HHHHHHHHHHHHHcCCC
Confidence 2211 12334678888887654
Done!