Query 013985
Match_columns 432
No_of_seqs 147 out of 281
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 03:24:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013985.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013985hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v84_A Galactosylgalactosylxyl 100.0 1.1E-85 3.8E-90 634.9 12.8 229 158-431 1-243 (253)
2 2d0j_A Galactosylgalactosylxyl 100.0 4.1E-84 1.4E-88 621.9 15.6 227 158-430 1-235 (246)
3 3cu0_A Galactosylgalactosylxyl 100.0 2.9E-84 9.9E-89 631.5 14.4 224 156-426 17-262 (281)
4 1qg8_A Protein (spore coat pol 96.3 0.016 5.4E-07 51.9 8.9 104 160-274 1-109 (255)
5 3bcv_A Putative glycosyltransf 95.5 0.092 3.2E-06 46.3 10.3 98 158-274 3-105 (240)
6 3f1y_A Mannosyl-3-phosphoglyce 94.8 0.052 1.8E-06 54.5 7.5 107 159-274 93-201 (387)
7 4fix_A UDP-galactofuranosyl tr 94.6 0.11 3.6E-06 55.8 9.5 104 158-274 178-289 (657)
8 1xhb_A Polypeptide N-acetylgal 93.6 0.061 2.1E-06 53.7 4.9 113 157-284 26-149 (472)
9 2z86_A Chondroitin synthase; G 92.9 0.3 1E-05 50.4 8.9 100 157-274 90-195 (625)
10 2ffu_A Ppgalnact-2, polypeptid 92.7 0.28 9.6E-06 49.5 8.3 102 157-274 63-167 (501)
11 3ckj_A Putative uncharacterize 92.4 0.36 1.2E-05 46.2 8.2 106 157-274 45-153 (329)
12 3l7i_A Teichoic acid biosynthe 90.8 0.045 1.5E-06 58.3 0.0 97 160-275 2-105 (729)
13 2z86_A Chondroitin synthase; G 90.7 1 3.6E-05 46.3 10.1 97 158-274 373-475 (625)
14 2d7i_A Polypeptide N-acetylgal 90.4 0.2 7E-06 52.0 4.5 99 158-273 110-216 (570)
15 4hg6_A Cellulose synthase subu 88.6 0.95 3.2E-05 49.3 8.2 102 157-274 137-259 (802)
16 2bo4_A Mannosylglycerate synth 81.1 5.6 0.00019 40.2 9.2 102 163-274 3-114 (397)
17 1fo8_A Alpha-1,3-mannosyl-glyc 77.0 19 0.00063 35.8 11.4 108 164-276 6-122 (343)
18 2fy7_A Beta-1,4-galactosyltran 61.1 18 0.00062 34.5 7.1 82 158-269 63-145 (287)
19 2wvl_A Mannosyl-3-phosphoglyce 50.2 28 0.00094 35.8 6.6 37 161-202 54-90 (391)
20 1ear_A Urease accessory protei 34.2 82 0.0028 27.6 6.4 61 158-230 74-140 (147)
21 3nrf_A APAG protein; structura 32.8 14 0.00047 31.7 1.1 18 253-270 80-98 (106)
22 3tj8_A Urease accessory protei 28.6 90 0.0031 28.1 5.8 56 158-223 76-139 (170)
23 2nxv_A ATP synthase subunits r 27.1 1.9E+02 0.0066 25.9 7.8 32 240-275 65-96 (249)
24 1olt_A Oxygen-independent copr 24.8 2.1E+02 0.007 28.7 8.3 94 159-254 105-204 (457)
25 2j48_A Two-component sensor ki 23.5 1.2E+02 0.0042 22.1 4.9 77 195-289 5-82 (119)
26 1gmu_A UREE; metallochaperone; 21.4 1.1E+02 0.0037 26.7 4.7 54 159-222 71-130 (143)
27 2pln_A HP1043, response regula 21.0 1.1E+02 0.0037 23.8 4.3 61 195-277 22-83 (137)
No 1
>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A*
Probab=100.00 E-value=1.1e-85 Score=634.95 Aligned_cols=229 Identities=31% Similarity=0.452 Sum_probs=197.8
Q ss_pred CCcEEEEEccCCccchhhHHHHhhhhhccCCCCCeEEEEEeCCC-CCHHHHHHHhhCCCceeeeecCCCCCCCc------
Q 013985 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGG-VTNETASLIAKSKLRTIHVGVDQKMPASW------ 230 (432)
Q Consensus 158 ~~~~IivVTPTy~R~~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~-~t~~va~lL~~sgl~y~HL~~~~~~p~~~------ 230 (432)
..|+||||||||+|++|+|||||||||||||| +||||||||++ +|++|+++|++|||+|+||++++ |.++
T Consensus 1 ~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp-~L~WIVVEd~~~~t~~va~lL~~sgl~y~HL~~~~--p~~~~~~~~~ 77 (253)
T 1v84_A 1 ALPTIHVVTPTYSRPVQKAELTRMANTLLHVP-NLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVET--PRNYKLRGDA 77 (253)
T ss_dssp -CCEEEEEEEECCSTTHHHHHHHHHHHHTTSS-SEEEEEEESSSSCCHHHHHHHHHHCCEEEEEECCC--CHHHHCC---
T ss_pred CCCEEEEEeCCCCccchhHHHHHHhhhhccCC-ceEEEEEeCCCCCCHHHHHHHHHcCCceEEeecCC--Cccccccccc
Confidence 36999999999999999999999999999998 89999999987 69999999999999999999974 3222
Q ss_pred -CCCchhhHHHHHHHHHHHHhc-----cCCeEEEEecCCCccchhhhhhhcceeeeeEEEeeEEeecCCCccchhhhhhh
Q 013985 231 -GGRHQLEAKMRLRALRIVREE-----KLDGIVMFADDSNMHSMELFDEIQNVKWFGAVSVGILALAGNQDESSSVIMEK 304 (432)
Q Consensus 231 -~~r~~~~~~qRN~AL~~IR~~-----~~~GVVyFADDDNtYdl~LFdemR~tk~vgvWPVGlv~~~Gg~~~~~~~~~~~ 304 (432)
..++..+.+|||+||+|||+| +++||||||||||+||+|||||||+||+||+||||++ ||.
T Consensus 78 ~~~~~~rg~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtYdl~LF~emR~i~~vgvWPVglv---g~~---------- 144 (253)
T 1v84_A 78 RDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFV---GGL---------- 144 (253)
T ss_dssp ----CCTTHHHHHHHHHHHHHHSCSSSCCCEEEEECCTTSEECHHHHHHHHTCSSEEECCEESC---TTS----------
T ss_pred cCccccchHHHHHHHHHHHHHhcccccccceeEEEecCCCcccHHHHHHHhccCeeEEEEEEee---cCc----------
Confidence 222234567999999999984 6899999999999999999999999999999999999 553
Q ss_pred hcCCCCCccccccceecCCCCeEEEEecCCCccccccccccccccccCCcccccceeeeeeccccccccCCCcccccccc
Q 013985 305 EEGGENTAMPVQGPACNSSNNLVGWHTFNSLPYARKSATYIDDRATVLPRKLEWAGFVLNSRLLWKEAKDKPEWVNDLDL 384 (432)
Q Consensus 305 ~~~~~~~~v~vEGP~cn~sgkVvGWht~~~~p~~~~sa~~~~drap~rpf~IDMAGFA~Ns~LLw~~~~~kp~~~~d~~~ 384 (432)
.+|||+|+++|||+|||+.|. |+|||||||||||||+++||+++++. .+.+.
T Consensus 145 ---------~~EgPv~~~~gkVvGw~~~w~---------------~~R~fpiDmAGFA~N~~lll~~p~a~----~~~~~ 196 (253)
T 1v84_A 145 ---------RYEAPRVNGAGKVVRWKTVFD---------------PHRPFAIDMAGFAVNLRLILQRSQAY----FKLRG 196 (253)
T ss_dssp ---------SEEEEEECTTSCEEEEECSSC---------------TTSTTCCCGGGEEEEHHHHHHSTTCC----CCSSS
T ss_pred ---------ceecCeECCCCCEeeeecccC---------------CCCCccceeeeeEEEehhhhhCCCce----ecccc
Confidence 599999998899999999873 77999999999999999888755442 34455
Q ss_pred cCCCccccc-cccccCCCCcccccCCCCCEEEEEecccCCCCCCCCCC
Q 013985 385 LDGLEDIES-PLSLLKDQSMVEPLGNCGRQVIVWWLRVEARSDSKFPP 431 (432)
Q Consensus 385 ~~~~~~iEs-~L~lL~d~~~lEPla~cc~~VLVWHtRtE~~~~sk~P~ 431 (432)
+++ +++|| +|+.|.+.++|||+|+||++|||||||||+|...++|+
T Consensus 197 ~~~-g~~Es~fL~~l~~~~~lEp~~~~C~~VlvWHtrte~p~~~~e~~ 243 (253)
T 1v84_A 197 VKG-GYQESSLLRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNEGK 243 (253)
T ss_dssp SCT-TCHHHHHHHHHCCGGGEEECHHHHTSCCEECCCBCCCCCGGGTT
T ss_pred CCC-cchhhHHHHhhhhHhhcEecCCCCCEEEEEecccCCcccccccc
Confidence 554 46777 77666788999999999999999999999999887775
No 2
>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-84 Score=621.91 Aligned_cols=227 Identities=26% Similarity=0.409 Sum_probs=192.6
Q ss_pred CCcEEEEEccCCccchhhHHHHhhhhhccCCCCCeEEEEEeCCC-CCHHHHHHHhhCCCceeeeecCCCCCCCcCCCc-h
Q 013985 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGG-VTNETASLIAKSKLRTIHVGVDQKMPASWGGRH-Q 235 (432)
Q Consensus 158 ~~~~IivVTPTy~R~~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~-~t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r~-~ 235 (432)
+.|+||||||||+|++|+|||||||||||||| +||||||||++ ++++|+++|++|||+|+||++++ |.+++..+ .
T Consensus 1 ~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp-~l~WIVVEd~~~~~~~v~~lL~~sgl~y~HL~~~~--~~~~~~~~~p 77 (246)
T 2d0j_A 1 QLPTIYAITPTYSRPVQKAELTRLANTFRQVA-QLHWILVEDAAARSELVSRFLARAGLPSTHLHVPT--PRRYKRPGLP 77 (246)
T ss_dssp CCCCEEEEEEECCSTTHHHHHHHHHHHHTTST-TEEEEEEESSSSCCHHHHHHHHHSCSCEEEEECCC--CCC----CCC
T ss_pred CCCEEEEEeCCCCccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCCCHHHHHHHHHcCCceEEEecCC--ccccCCCCCc
Confidence 36999999999999999999999999999999 69999999998 56789999999999999999974 44454322 2
Q ss_pred hhHHHHHHHHHHHHhccC-----CeEEEEecCCCccchhhhhhhcceeeeeEEEeeEEeecCCCccchhhhhhhhcCCCC
Q 013985 236 LEAKMRLRALRIVREEKL-----DGIVMFADDSNMHSMELFDEIQNVKWFGAVSVGILALAGNQDESSSVIMEKEEGGEN 310 (432)
Q Consensus 236 ~~~~qRN~AL~~IR~~~~-----~GVVyFADDDNtYdl~LFdemR~tk~vgvWPVGlv~~~Gg~~~~~~~~~~~~~~~~~ 310 (432)
.+.+|||.||+|||+|++ +||||||||||+||+|||||||+||+||+||||++ ||.
T Consensus 78 rg~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtY~l~LF~emR~i~~vgvWPVglv---g~~---------------- 138 (246)
T 2d0j_A 78 RATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLV---GGR---------------- 138 (246)
T ss_dssp CCHHHHHHHHHHHHHHSCSSSCCCCEEEECCTTCEECTHHHHHHTTCSSEEECCEEEE---TTE----------------
T ss_pred chHHHHHHHHHHHHHhcccccCccceEEEccCCCcccHHHHHHHhhhceeeEEEEEee---cCc----------------
Confidence 345799999999999975 79999999999999999999999999999999999 553
Q ss_pred CccccccceecCCCCeEEEEecCCCccccccccccccccccCCcccccceeeeeeccccccccCCCcccccccccCCCcc
Q 013985 311 TAMPVQGPACNSSNNLVGWHTFNSLPYARKSATYIDDRATVLPRKLEWAGFVLNSRLLWKEAKDKPEWVNDLDLLDGLED 390 (432)
Q Consensus 311 ~~v~vEGP~cn~sgkVvGWht~~~~p~~~~sa~~~~drap~rpf~IDMAGFA~Ns~LLw~~~~~kp~~~~d~~~~~~~~~ 390 (432)
.+|||+|+ +|||+|||+.|. |+|||||||||||||+++||+++++.+ +. ...++ ++
T Consensus 139 ---~~EgPv~~-~gkVvGw~t~w~---------------~~R~fpiDmAGFA~N~~lll~~p~a~~---~~-~~~~~-g~ 194 (246)
T 2d0j_A 139 ---RYERPLVE-NGKVVGWYTGWR---------------ADRPFAIDMAGFAVSLQVILSNPKAVF---KR-RGSQP-GM 194 (246)
T ss_dssp ---EEEEEEEE-TTEEEEEECSSC---------------TTSTTCCCGGGEEEEHHHHHHCTTCCC---CT-TSSSG-GG
T ss_pred ---ceecceee-CCEecceecccC---------------CCCcCcccceeeEeehhhhhcCccccc---cc-CCCCC-Cc
Confidence 59999999 789999999873 678999999999999998877665422 21 12222 46
Q ss_pred ccc-cccccCCCCcccccCCCCCEEEEEecccCCCCCCCCC
Q 013985 391 IES-PLSLLKDQSMVEPLGNCGRQVIVWWLRVEARSDSKFP 430 (432)
Q Consensus 391 iEs-~L~lL~d~~~lEPla~cc~~VLVWHtRtE~~~~sk~P 430 (432)
+|| +|+.|.|.++|||+|+||++|||||||||++....-|
T Consensus 195 ~Es~fL~~l~~~~~lEp~~~~c~~VlvWhtrte~~~l~~e~ 235 (246)
T 2d0j_A 195 QESDFLKQITTVEELEPKANNCTKVLVWHTRTEKVNLANEP 235 (246)
T ss_dssp HHHHHHHTTCCGGGCEECHHHHTCCCEECCCBCCCCCTTCC
T ss_pred hhhHHHHHhccHhhceeccCCCCEEEEEeccccCccccccc
Confidence 777 7777788899999999999999999999999765544
No 3
>3cu0_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 3; glcat-I, glycosyltransferase, heparan sulfate biosynthesis, glycoprotein; HET: GAL UDP; 1.90A {Homo sapiens} SCOP: c.68.1.7 PDB: 1kws_A* 1fgg_A*
Probab=100.00 E-value=2.9e-84 Score=631.51 Aligned_cols=224 Identities=32% Similarity=0.456 Sum_probs=191.0
Q ss_pred CCCCcEEEEEccCCccchhhHHHHhhhhhccCCCCCeEEEEEeCCC-CCHHHHHHHhhCCCceeeeecCCCCC-------
Q 013985 156 FKNPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGG-VTNETASLIAKSKLRTIHVGVDQKMP------- 227 (432)
Q Consensus 156 ~~~~~~IivVTPTy~R~~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~-~t~~va~lL~~sgl~y~HL~~~~~~p------- 227 (432)
.++.|+||||||||.|++|+|||||||||||||| +||||||||++ +|++|++||++|||+|+||+++++..
T Consensus 17 ~~~~p~IivVTPTy~R~~Q~a~LtRLa~TL~~Vp-~L~WIVVEd~~~~t~~va~lL~rsGl~y~HL~~~~p~~~~~~~~d 95 (281)
T 3cu0_A 17 RGSHMTIYVVTPTYARLVQKAELVRLSQTLSLVP-RLHWLLVEDAEGPTPLVSGLLAASGLLFTHLVVLTPKAQRLREGE 95 (281)
T ss_dssp ----CEEEEEEEECCSTTHHHHHHHHHHHHTTSS-SEEEEEEESSSSCCHHHHHHHHHHCSEEEEEECCCC---------
T ss_pred CCCCCeEEEEeCCCCCcchhHHHHHHHHHHhcCC-ceEEEEEcCCCCCCHHHHHHHHHcCCceEEeccCCCccccccccc
Confidence 4578999999999999999999999999999999 89999999986 69999999999999999999974311
Q ss_pred CCcCCCchhhHHHHHHHHHHHH--------hcc-----CCeEEEEecCCCccchhhhhhhcceeeeeEEEeeEEeecCCC
Q 013985 228 ASWGGRHQLEAKMRLRALRIVR--------EEK-----LDGIVMFADDSNMHSMELFDEIQNVKWFGAVSVGILALAGNQ 294 (432)
Q Consensus 228 ~~~~~r~~~~~~qRN~AL~~IR--------~~~-----~~GVVyFADDDNtYdl~LFdemR~tk~vgvWPVGlv~~~Gg~ 294 (432)
+.|..+++ .+|||+||+||| +|. ++||||||||||+||+|||||||+||+||+||||++ ||
T Consensus 96 p~w~~~rg--~~QRN~AL~~Ir~~~~~~~~~~~~~~~~~~GVVyFADDDNtYsl~LFdemR~ik~vgvWPVGlv---gg- 169 (281)
T 3cu0_A 96 PGWVHPRG--VEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLV---GG- 169 (281)
T ss_dssp --CCCCCS--HHHHHHHHHHHTTCCCEEEECCSCCCTTCCEEEEECCTTSEECHHHHHHHTSCSSEEECCEEEE---TT-
T ss_pred cccccchh--HHHHHHHHHHHHhhccccchhccccccCCceeEEEecCCCcccHHHHHHhhhcceEeEEEeecc---cc-
Confidence 23444443 479999999999 763 689999999999999999999999999999999999 55
Q ss_pred ccchhhhhhhhcCCCCCccccccceecCCCCeEEEEecCCCccccccccccccccccCCcccccceeeeeeccccccccC
Q 013985 295 DESSSVIMEKEEGGENTAMPVQGPACNSSNNLVGWHTFNSLPYARKSATYIDDRATVLPRKLEWAGFVLNSRLLWKEAKD 374 (432)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~v~vEGP~cn~sgkVvGWht~~~~p~~~~sa~~~~drap~rpf~IDMAGFA~Ns~LLw~~~~~ 374 (432)
+.||||+|+ +|||+|||+.|. |.|||||||||||||+++||+++++
T Consensus 170 ------------------~~vEgPvc~-~gkVvGw~t~w~---------------~~R~fpiDMAGFA~N~~lL~~~p~a 215 (281)
T 3cu0_A 170 ------------------LRFEGPQVQ-DGRVVGFHTAWE---------------PSRPFPVDMAGFAVALPLLLDKPNA 215 (281)
T ss_dssp ------------------EEEEEEEEE-TTEEEEEECCSS---------------TTCSSCCCGGGEEEEHHHHHHCTTC
T ss_pred ------------------ceeEEEEEe-CCEEeeeeccCC---------------CCCCCccccceeEeehhhhhcCCcc
Confidence 369999999 789999999884 6789999999999999999987665
Q ss_pred CCcccccccccCCCccccc-cccccCCCCcccccCCCCCEEEEEecccCCCCC
Q 013985 375 KPEWVNDLDLLDGLEDIES-PLSLLKDQSMVEPLGNCGRQVIVWWLRVEARSD 426 (432)
Q Consensus 375 kp~~~~d~~~~~~~~~iEs-~L~lL~d~~~lEPla~cc~~VLVWHtRtE~~~~ 426 (432)
.+ +.+..+ +++|| +|+.|.+.++|||+|+||++|||||||||+|..
T Consensus 216 ~f----~~~~~~--G~qEs~fL~~lv~~~~lEp~~~~c~~VlVWHtrte~p~l 262 (281)
T 3cu0_A 216 QF----DSTAPR--GHLESSLLSHLVDPKDLEPRAANCTRVLVWHTRTEKPKM 262 (281)
T ss_dssp CC----CTTSCT--TCHHHHHHTTTCCGGGCEECHHHHTCCCEECCCBCCCCC
T ss_pred cc----cCCCCC--cchhhHHHHHhccHhhcEecCCCCCEEEEEecccCCCcc
Confidence 43 222333 46787 677667899999999999999999999999863
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=96.25 E-value=0.016 Score=51.92 Aligned_cols=104 Identities=13% Similarity=0.198 Sum_probs=61.3
Q ss_pred cEEEEEccCCccchhhHHHHhhhhhcc-CCCCCeEEEEEeCCCCCHHHHHHHhhC----CCceeeeecCCCCCCCcCCCc
Q 013985 160 RTLIVVTPTYVRTFQTLHLTGVMHSLM-LVPYDLVWIVVEAGGVTNETASLIAKS----KLRTIHVGVDQKMPASWGGRH 234 (432)
Q Consensus 160 ~~IivVTPTy~R~~Q~a~LTRLa~TL~-lVp~~L~WIVVEd~~~t~~va~lL~~s----gl~y~HL~~~~~~p~~~~~r~ 234 (432)
|.|-||+|||.+..- |.+.-.+|. +--+++-.|||+|++. ..+.+++++- ++.+.+..... .....+..
T Consensus 1 p~vSViIp~yn~~~~---l~~~l~Sl~~q~~~~~eiivvDd~S~-d~t~~~~~~~~~~~~i~~i~~~~~~-~~~~~~n~- 74 (255)
T 1qg8_A 1 PKVSVIMTSYNKSDY---VAKSISSILSQTFSDFELFIMDDNSN-EETLNVIRPFLNDNRVRFYQSDISG-VKERTEKT- 74 (255)
T ss_dssp CCEEEEEEESSCTTT---HHHHHHHHHTCSCCCEEEEEEECSCC-HHHHHHHGGGGGSTTEEEEECCCCS-HHHHHSSC-
T ss_pred CeEEEEEEcCCCHHH---HHHHHHHHHhccCCceEEEEEECCCC-chHHHHHHHHhhcCCEEEEeccccc-cccccccc-
Confidence 568899999998632 333332322 1222789999999863 4566666653 44443332100 00000112
Q ss_pred hhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 013985 235 QLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 235 ~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdem 274 (432)
+. ...||.|++.. ..-+|.|.|+|..++...++++
T Consensus 75 G~-~~a~N~gi~~a----~g~~i~~lD~Dd~~~~~~l~~~ 109 (255)
T 1qg8_A 75 RY-AALINQAIEMA----EGEYITYATDDNIYMPDRLLKM 109 (255)
T ss_dssp HH-HHHHHHHHHHC----CCSEEEEEETTEEECTTHHHHH
T ss_pred CH-HHHHHHHHHHc----CCCEEEEeCCCCccChHHHHHH
Confidence 22 24799999764 3348999999999988877664
No 5
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=95.48 E-value=0.092 Score=46.33 Aligned_cols=98 Identities=13% Similarity=0.214 Sum_probs=59.9
Q ss_pred CCcEEEEEccCCccchhhHHHHhhhhhcc-CCCCCeEEEEEeCCCC--CHH-HHHHHhh-CCCceeeeecCCCCCCCcCC
Q 013985 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLM-LVPYDLVWIVVEAGGV--TNE-TASLIAK-SKLRTIHVGVDQKMPASWGG 232 (432)
Q Consensus 158 ~~~~IivVTPTy~R~~Q~a~LTRLa~TL~-lVp~~L~WIVVEd~~~--t~~-va~lL~~-sgl~y~HL~~~~~~p~~~~~ 232 (432)
..|.|-||.|||.+.... .+.-.+|. +-.+++-.|||+|++. |.. +.++.++ .++.+.| .++
T Consensus 3 ~~p~vsViIp~yn~~~~l---~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i~---~~n------- 69 (240)
T 3bcv_A 3 LIPKVSVIVPIYNVEKYL---DQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIH---KKN------- 69 (240)
T ss_dssp CCCSEEEEEEESSCTTTH---HHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEEE---CCC-------
T ss_pred CCCcEEEEEecCCCHHHH---HHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEEE---CCC-------
Confidence 467899999999986432 23222222 2223789999999874 222 2233222 2344333 211
Q ss_pred CchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 013985 233 RHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 233 r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdem 274 (432)
.+. ...||.|++.. ..-+|.|.|+|..++...++++
T Consensus 70 ~G~--~~a~N~g~~~a----~g~~i~~lD~Dd~~~~~~l~~l 105 (240)
T 3bcv_A 70 AGL--GMACNSGLDVA----TGEYVAFCDSDDYVDSDMYMTM 105 (240)
T ss_dssp CCH--HHHHHHHHHHC----CSSEEEECCTTCCCCTTHHHHH
T ss_pred CCh--HHHHHHHHHHc----CCCEEEEECCCCcCCHHHHHHH
Confidence 222 24699999874 2358999999999998887774
No 6
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=94.85 E-value=0.052 Score=54.48 Aligned_cols=107 Identities=16% Similarity=0.066 Sum_probs=67.9
Q ss_pred CcEEEEEccCCccchhhHH-HHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhCCCceeeeecCCCCCCCcCCCchhh
Q 013985 159 PRTLIVVTPTYVRTFQTLH-LTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLE 237 (432)
Q Consensus 159 ~~~IivVTPTy~R~~Q~a~-LTRLa~TL~lVp~~L~WIVVEd~~~t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r~~~~ 237 (432)
.|.|-||.|||.......+ |..+...+...+.+...|||+|+++ ..|.+++++.+..+.+-... ....-.+.+ .+
T Consensus 93 ~p~vSVVIP~yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgSt-D~T~~i~~~~~~~v~~~~~~--~i~~~~n~G-~g 168 (387)
T 3f1y_A 93 GLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSE-DGTAGVAASHGAEVYSENEL--MSGYGDAHG-KG 168 (387)
T ss_dssp TCCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCS-SSHHHHHHHTTCEEEEGGGT--TGGGCSCCS-HH
T ss_pred CCeEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCC-ccHHHHHHHhCchhccccee--EecCCccCC-HH
Confidence 5789999999998654443 4455544445555789999999874 45667777777655442210 100001222 22
Q ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCc-cchhhhhhh
Q 013985 238 AKMRLRALRIVREEKLDGIVMFADDSNM-HSMELFDEI 274 (432)
Q Consensus 238 ~~qRN~AL~~IR~~~~~GVVyFADDDNt-Ydl~LFdem 274 (432)
..+|.|+++. ..-+|.|.|.|.. ++.+.+++|
T Consensus 169 -~A~n~G~~~A----~gd~i~~lDaD~~~~~p~~L~~l 201 (387)
T 3f1y_A 169 -DAMWRALSVT----RGDLVLYIDADTRDFRPQLAYGV 201 (387)
T ss_dssp -HHHHHHTTTC----CSSEEEECCTTCSSCCTHHHHTT
T ss_pred -HHHHHHHHhc----CCCEEEEEcCCCCcCCHHHHHHH
Confidence 3689998664 2348999999999 888776653
No 7
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=94.59 E-value=0.11 Score=55.80 Aligned_cols=104 Identities=14% Similarity=0.059 Sum_probs=67.9
Q ss_pred CCcEEEEEccCCccchhhHHHHhhhhhccCCC----CCeEEEEEeCCCC----CHHHHHHHhhCCCceeeeecCCCCCCC
Q 013985 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLMLVP----YDLVWIVVEAGGV----TNETASLIAKSKLRTIHVGVDQKMPAS 229 (432)
Q Consensus 158 ~~~~IivVTPTy~R~~Q~a~LTRLa~TL~lVp----~~L~WIVVEd~~~----t~~va~lL~~sgl~y~HL~~~~~~p~~ 229 (432)
..|.|-||.|||.|.. +|.+.-.+|..-. .+..-|||+|+++ +..+.+++++.+-..+.+..+ |
T Consensus 178 ~~pkVSVVIptYN~~~---~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~-N---- 249 (657)
T 4fix_A 178 GTANIAVGIPTFNRPA---DCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQP-N---- 249 (657)
T ss_dssp SCCCEEEECCBSSCHH---HHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECC-C----
T ss_pred CCCeEEEEEEecCCHH---HHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEECC-C----
Confidence 4578999999999865 3333334443321 1347899999874 345677776544344443221 2
Q ss_pred cCCCchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 013985 230 WGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 230 ~~~r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdem 274 (432)
.+. ...||.|+++.+.+...-+|.|.|||...+.+.+++|
T Consensus 250 ---~G~--a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~l 289 (657)
T 4fix_A 250 ---LGG--SGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRV 289 (657)
T ss_dssp ---CHH--HHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHH
T ss_pred ---CCH--HHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHH
Confidence 122 2469999999877644458999999999888877664
No 8
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=93.58 E-value=0.061 Score=53.65 Aligned_cols=113 Identities=16% Similarity=0.166 Sum_probs=65.9
Q ss_pred CCCcEEEEEccCCccchhhHHHHhhhhhccC-CCCC--eEEEEEeCCCCCHHHH----HHHhhCCCceeeeecCCCCCCC
Q 013985 157 KNPRTLIVVTPTYVRTFQTLHLTGVMHSLML-VPYD--LVWIVVEAGGVTNETA----SLIAKSKLRTIHVGVDQKMPAS 229 (432)
Q Consensus 157 ~~~~~IivVTPTy~R~~Q~a~LTRLa~TL~l-Vp~~--L~WIVVEd~~~t~~va----~lL~~sgl~y~HL~~~~~~p~~ 229 (432)
.+.|.|-||.|||.+.. ..|.+.-++|.. .+++ .--|||+|++..+.+. ++.++.+...+.+..+.+.
T Consensus 26 ~~~p~vSVIIp~yN~~~--~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~--- 100 (472)
T 1xhb_A 26 DNLPTTSVVIVFHNEAW--STLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRS--- 100 (472)
T ss_dssp SCCCCEEEEEEESSCCH--HHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCC---
T ss_pred cCCCCeEEEEEeCCCCH--HHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCC---
Confidence 36788999999999872 233333333332 2324 4789999987544333 3334333223333322221
Q ss_pred cCCCchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhh----hcceeeeeEEE
Q 013985 230 WGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDE----IQNVKWFGAVS 284 (432)
Q Consensus 230 ~~~r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFde----mR~tk~vgvWP 284 (432)
+. ...||.|++.. ..-+|.|.|+|..++...+++ +++-..+++-|
T Consensus 101 ----G~--~~a~N~g~~~A----~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~~ 149 (472)
T 1xhb_A 101 ----GL--IRARLKGAAVS----RGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCP 149 (472)
T ss_dssp ----CH--HHHHHHHHHHC----CSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEE
T ss_pred ----Ch--HHHHHHHHHhc----cCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEEe
Confidence 22 24699999764 245899999999888776655 33334444444
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=92.87 E-value=0.3 Score=50.35 Aligned_cols=100 Identities=20% Similarity=0.170 Sum_probs=63.7
Q ss_pred CCCcEEEEEccCCccchhhHHHHhhhhhccCC--CCCeEEEEEeCCCCCHHHHHHHhhC----CCceeeeecCCCCCCCc
Q 013985 157 KNPRTLIVVTPTYVRTFQTLHLTGVMHSLMLV--PYDLVWIVVEAGGVTNETASLIAKS----KLRTIHVGVDQKMPASW 230 (432)
Q Consensus 157 ~~~~~IivVTPTy~R~~Q~a~LTRLa~TL~lV--p~~L~WIVVEd~~~t~~va~lL~~s----gl~y~HL~~~~~~p~~~ 230 (432)
...|.|-||.|||.+. ..|.+.-++|..- +.++.-|||+|++. +.+.+++++. ++.+.+. +.
T Consensus 90 ~~~p~vsviIp~~n~~---~~l~~~l~sl~~q~~~~~~eiivvDd~s~-d~t~~~~~~~~~~~~i~~i~~--~~------ 157 (625)
T 2z86_A 90 LIIDGLSIVIPTYNRA---KILAITLACLCNQKTIYDYEVIVADDGSK-ENIEEIVREFESLLNIKYVRQ--KD------ 157 (625)
T ss_dssp CCCCCEEEEEEESSCH---HHHHHHHHHHHTCCCSSCEEEEEEEESCS-SCHHHHHHTTTTTSCEEEEEE--CC------
T ss_pred ccCCcEEEEEecCCcH---HHHHHHHHHHHhhccCCCeEEEEEeCCCc-hhHHHHHHHhhhcCCeEEEEe--CC------
Confidence 3568899999999985 3455555555433 23688999998864 3355555553 3444332 11
Q ss_pred CCCchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 013985 231 GGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 231 ~~r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdem 274 (432)
...+. ...||.|++.. ..-+|.|.|+|..++...++++
T Consensus 158 -~~~g~-~~a~N~g~~~a----~g~~v~~lD~D~~~~~~~l~~~ 195 (625)
T 2z86_A 158 -YGYQL-CAVRNLGLRAA----KYNYVAILDCDMAPNPLWVQSY 195 (625)
T ss_dssp -CSCCH-HHHHHHHHHHC----CSSEEEEECTTEEECTTHHHHH
T ss_pred -CCcch-hHHHHHHHHhC----CcCEEEEECCCCCCCHHHHHHH
Confidence 01111 24699999764 2348999999999988777664
No 10
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=92.71 E-value=0.28 Score=49.53 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=62.5
Q ss_pred CCCcEEEEEccCCccchhhHHHHhhhhhc-cCCCCC--eEEEEEeCCCCCHHHHHHHhhCCCceeeeecCCCCCCCcCCC
Q 013985 157 KNPRTLIVVTPTYVRTFQTLHLTGVMHSL-MLVPYD--LVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGR 233 (432)
Q Consensus 157 ~~~~~IivVTPTy~R~~Q~a~LTRLa~TL-~lVp~~--L~WIVVEd~~~t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r 233 (432)
.+.|.|-||.|||.+... .|.+.-+++ .+.+++ .--|||+|++..+....++++.. ..+.+..+.+
T Consensus 63 ~~~p~vSVIIp~yN~~~~--~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~~~~-~v~vi~~~~n-------- 131 (501)
T 2ffu_A 63 VDLPATSVVITFHNEARS--ALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIE-KVRVLRNDRR-------- 131 (501)
T ss_dssp SSCCCEEEEEEESSCCHH--HHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBT-TEEEEECSSC--------
T ss_pred cCCCCEEEEEEeCcCcHH--HHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHhcCC-CEEEEECCCC--------
Confidence 367889999999998642 233333332 223334 37899999986555555555421 2222222211
Q ss_pred chhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 013985 234 HQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 234 ~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdem 274 (432)
.+. ...||.|++.. ..-+|.|.|+|..++.+.+++|
T Consensus 132 ~G~-~~A~N~G~~~A----~gd~i~flD~D~~~~p~~L~~l 167 (501)
T 2ffu_A 132 EGL-MRSRVRGADAA----QAKVLTFLDSHCECNEHWLEPL 167 (501)
T ss_dssp CHH-HHHHHHHHHHC----CSSEEEECCSSEEECTTCHHHH
T ss_pred cCH-HHHHHHHHHhc----CCCEEEEECCCcccCccHHHHH
Confidence 122 24699999764 2358999999999887776664
No 11
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=92.37 E-value=0.36 Score=46.19 Aligned_cols=106 Identities=17% Similarity=0.139 Sum_probs=64.4
Q ss_pred CCCcEEEEEccCCccchhhH-HHHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhCCCceee-eecCCCCCCCcCCCc
Q 013985 157 KNPRTLIVVTPTYVRTFQTL-HLTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIH-VGVDQKMPASWGGRH 234 (432)
Q Consensus 157 ~~~~~IivVTPTy~R~~Q~a-~LTRLa~TL~lVp~~L~WIVVEd~~~t~~va~lL~~sgl~y~H-L~~~~~~p~~~~~r~ 234 (432)
+..|.|-||.|||.+..... -|..+.+-. .+.++-.|||+|+++ ..+.+++++.+..+.. +.+-...+ .+.+
T Consensus 45 ~~~~~vSViIp~yN~~~~l~~~l~sl~~q~--~~~~~eiivVDdgS~-D~t~~~~~~~~~~~~~~~~~~~~~~---~n~G 118 (329)
T 3ckj_A 45 KAGRTISVVLPALDEEDTIGSVIDSISPLV--DGLVDELIVLDSGST-DDTEIRAVAAGARVVSREQALPEVP---IRPG 118 (329)
T ss_dssp TTTCCEEEEEEESSCTTTHHHHHHHHGGGB--TTTBSEEEEEECSCC-SSHHHHHHHTTCEEEEHHHHCTTSC---CCCS
T ss_pred ccCCcEEEEEeeCCCHHHHHHHHHHHHHhh--CCCCcEEEEEeCCCC-chHHHHHHHhhhhhccceeeeccCC---CCCC
Confidence 45688999999999754332 233332211 132478899998864 4567778877765432 11100011 1222
Q ss_pred hhhHHHHHHHHHHHHhccCCeEEEEecCCCc-cchhhhhhh
Q 013985 235 QLEAKMRLRALRIVREEKLDGIVMFADDSNM-HSMELFDEI 274 (432)
Q Consensus 235 ~~~~~qRN~AL~~IR~~~~~GVVyFADDDNt-Ydl~LFdem 274 (432)
. ...+|.|++.. ..-+|.|.|+|.. ++.+.+++|
T Consensus 119 ~--~~a~n~g~~~a----~gd~i~~lD~D~~~~~p~~l~~l 153 (329)
T 3ckj_A 119 K--GEALWRSLAAS----RGDIVVFVDSDLINPHPMFVPWL 153 (329)
T ss_dssp H--HHHHHHHHHHC----CCSEEEECCTTEESCCTTHHHHH
T ss_pred H--HHHHHHHHHhC----CCCEEEEECCCCCCcChHHHHHH
Confidence 2 24699999764 2358999999999 887777663
No 12
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=90.79 E-value=0.045 Score=58.29 Aligned_cols=97 Identities=21% Similarity=0.273 Sum_probs=0.0
Q ss_pred cEEEEEccCCccchhhHHHHhhhhhcc-CCCCCeEEEEEeCCCCCHHHHHHHhhC------CCceeeeecCCCCCCCcCC
Q 013985 160 RTLIVVTPTYVRTFQTLHLTGVMHSLM-LVPYDLVWIVVEAGGVTNETASLIAKS------KLRTIHVGVDQKMPASWGG 232 (432)
Q Consensus 160 ~~IivVTPTy~R~~Q~a~LTRLa~TL~-lVp~~L~WIVVEd~~~t~~va~lL~~s------gl~y~HL~~~~~~p~~~~~ 232 (432)
|.|=||.|||.+.. .|.+.-.+|. +--+++-.|||+|++. ..+.+++++. ++.+.+.. .+
T Consensus 2 p~vSVIIp~yN~~~---~L~~~L~Sll~Qt~~~~EIIVVDDgSt-D~t~~il~~~~~~~~~~i~~i~~~--~n------- 68 (729)
T 3l7i_A 2 NKLTIIVTYYNAEE---YITGCLESIKQQRTQDFNLIIVNDGST-DQSKKLMDEAIKDYDKNIRFIDLD--EN------- 68 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEEcCCCHH---HHHHHHHHHHhCCCCCeEEEEEECCCC-CcHHHHHHHHHHhCCCCEEEEECC--CC-------
Confidence 67889999999853 2222222221 1112677899999873 3344444432 34444332 11
Q ss_pred CchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhc
Q 013985 233 RHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (432)
Q Consensus 233 r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR 275 (432)
. +. ...||.|++..+ .-+|.|.|+|..++...++++-
T Consensus 69 ~-G~-~~arN~gi~~A~----gdyI~flD~Dd~~~p~~l~~l~ 105 (729)
T 3l7i_A 69 S-GH-AHARNIALEEVE----TPYFMFLDADDELASYAITFYL 105 (729)
T ss_dssp -------------------------------------------
T ss_pred C-CH-HHHHHHHHHhcc----CCEEEEECCCCCCChhHHHHHH
Confidence 1 11 136999997763 2389999999999988887743
No 13
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=90.66 E-value=1 Score=46.31 Aligned_cols=97 Identities=12% Similarity=0.136 Sum_probs=59.5
Q ss_pred CCcEEEEEccCCccchhhHHHHhhhhhc-cCCCCCeEEEEEeCCCCCHHHHHHHhh-----CCCceeeeecCCCCCCCcC
Q 013985 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSL-MLVPYDLVWIVVEAGGVTNETASLIAK-----SKLRTIHVGVDQKMPASWG 231 (432)
Q Consensus 158 ~~~~IivVTPTy~R~~Q~a~LTRLa~TL-~lVp~~L~WIVVEd~~~t~~va~lL~~-----sgl~y~HL~~~~~~p~~~~ 231 (432)
..|.|-||+|||.+... |.+.-.++ .+.-+++-.|||+|++.. .+.+++++ .++.+.+ ..+
T Consensus 373 ~~~~vsiii~~yn~~~~---l~~~l~s~~~q~~~~~eiivvdd~S~d-~t~~~~~~~~~~~~~i~~~~---~~n------ 439 (625)
T 2z86_A 373 RVPLVSIYIPAYNCSKY---IVRCVESALNQTITDLEVCICDDGSTD-DTLRILQEHYANHPRVRFIS---QKN------ 439 (625)
T ss_dssp SSCSEEEEEEESSCTTT---HHHHHHHHHSSSCCSEEEEEEEESCSS-SHHHHHHHHHTTCTTEEEEE---ECC------
T ss_pred cCCeEEEEEeCCCCHHH---HHHHHHHHHhCcCCCeEEEEEECcCCh-hHHHHHHHHHhhCCcEEEEe---CCC------
Confidence 35789999999998532 33322222 222237899999998742 23334433 2333332 211
Q ss_pred CCchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 013985 232 GRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 232 ~r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdem 274 (432)
.+.. ..||.|++.. ..-+|.|.|+|..++...++++
T Consensus 440 -~G~~--~a~n~g~~~a----~g~~i~~ld~D~~~~~~~l~~~ 475 (625)
T 2z86_A 440 -KGIG--SASNTAVRLC----RGFYIGQLDSDDFLEPDAVELC 475 (625)
T ss_dssp -CCHH--HHHHHHHHHC----CSSEEEECCTTCEECTTHHHHH
T ss_pred -CCHH--HHHHHHHHhc----CCCEEEEECCCcccChhHHHHH
Confidence 2222 3699999764 2348999999999998888764
No 14
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=90.40 E-value=0.2 Score=52.00 Aligned_cols=99 Identities=13% Similarity=0.201 Sum_probs=58.8
Q ss_pred CCcEEEEEccCCccchhhHHHHhhhhhcc-CCCCCe--EEEEEeCCCCCHH----HHHHHhhC-CCceeeeecCCCCCCC
Q 013985 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSLM-LVPYDL--VWIVVEAGGVTNE----TASLIAKS-KLRTIHVGVDQKMPAS 229 (432)
Q Consensus 158 ~~~~IivVTPTy~R~~Q~a~LTRLa~TL~-lVp~~L--~WIVVEd~~~t~~----va~lL~~s-gl~y~HL~~~~~~p~~ 229 (432)
..|.|-||.|||.+. ...|.+.-++|. +-++++ --|||+|++..+. +.++.++. ++.+.+. +.+
T Consensus 110 ~~P~vSVIIp~yNe~--~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi~~--~~n---- 181 (570)
T 2d7i_A 110 TLPNTSIIIPFHNEG--WSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRILRT--KKR---- 181 (570)
T ss_dssp SCCCEEEEEEESSCC--HHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEEEC--SSC----
T ss_pred CCCCeEEEEEECCCC--HHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEEEEC--CCC----
Confidence 568899999999986 123333333332 223344 7899999875433 33333332 2333322 211
Q ss_pred cCCCchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 013985 230 WGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (432)
Q Consensus 230 ~~~r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFde 273 (432)
. +. ...||.|++.. ..-+|.|.|+|..++...+++
T Consensus 182 ---~-G~-~~A~N~G~~~A----~gd~i~fLD~D~~~~p~~L~~ 216 (570)
T 2d7i_A 182 ---E-GL-IRTRMLGASVA----TGDVITFLDSHCEANVNWLPP 216 (570)
T ss_dssp ---C-CH-HHHHHHHHHHC----CSSEEEECCSSEEECTTCSHH
T ss_pred ---C-CH-HHHHHHHHHhc----CCCEEEEEcCCccccccHHHH
Confidence 1 22 24699999864 235999999999987766554
No 15
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=88.56 E-value=0.95 Score=49.27 Aligned_cols=102 Identities=14% Similarity=0.145 Sum_probs=63.1
Q ss_pred CCCcEEEEEccCCccchhhHHHHhhhhhccC--CCC-CeEEEEEeCCCCCH------------------HHHHHHhhCCC
Q 013985 157 KNPRTLIVVTPTYVRTFQTLHLTGVMHSLML--VPY-DLVWIVVEAGGVTN------------------ETASLIAKSKL 215 (432)
Q Consensus 157 ~~~~~IivVTPTy~R~~Q~a~LTRLa~TL~l--Vp~-~L~WIVVEd~~~t~------------------~va~lL~~sgl 215 (432)
...|.|-||.|||...... |.+.-.++.. -|. .+.-|||+|++..+ .+.++.++.++
T Consensus 137 ~~~P~VSViIPtyNe~~~l--L~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v 214 (802)
T 4hg6_A 137 EELPTVDILVPSYNEPADM--LSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGV 214 (802)
T ss_dssp TTCCCEEEEEECTTCCHHH--HHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCcEEEEEEECCCCHHH--HHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCc
Confidence 3568899999999876432 1222233322 231 28899999986321 23444566677
Q ss_pred ceeeeecCCCCCCCcCCCchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhh
Q 013985 216 RTIHVGVDQKMPASWGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEI 274 (432)
Q Consensus 216 ~y~HL~~~~~~p~~~~~r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdem 274 (432)
.|.+..-+ ..++. ..+|.|++.. ..-+|.|.|+|...+.+.+++|
T Consensus 215 ~~i~~~~~--------~~GKa--~alN~gl~~a----~gd~Il~lDaD~~~~pd~L~~l 259 (802)
T 4hg6_A 215 VYSTRERN--------EHAKA--GNMSAALERL----KGELVVVFDADHVPSRDFLART 259 (802)
T ss_dssp EEEECSSC--------CSHHH--HHHHHHHHHC----CCSEEEECCTTEEECTTHHHHH
T ss_pred EEEEecCC--------CCcch--HHHHHHHHhc----CCCEEEEECCCCCcChHHHHHH
Confidence 76654211 12222 3699999764 3358999999999988777663
No 16
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=81.10 E-value=5.6 Score=40.16 Aligned_cols=102 Identities=14% Similarity=-0.018 Sum_probs=55.8
Q ss_pred EEEccCCccchhhHH-HHhhhhhccCCCCCeEEEEEeCCCC--CHHHHHHH----h-hCCCceeeeecCCCCCCCcCCCc
Q 013985 163 IVVTPTYVRTFQTLH-LTGVMHSLMLVPYDLVWIVVEAGGV--TNETASLI----A-KSKLRTIHVGVDQKMPASWGGRH 234 (432)
Q Consensus 163 ivVTPTy~R~~Q~a~-LTRLa~TL~lVp~~L~WIVVEd~~~--t~~va~lL----~-~sgl~y~HL~~~~~~p~~~~~r~ 234 (432)
+||-|+|... ... +.++..... .+ +.--|||+|+++ |.++++-| . ..|+....+.... +.. .+.
T Consensus 3 lVIiP~~eE~--I~~vl~~l~~~~~-~~-~~EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r--~~~-~n~- 74 (397)
T 2bo4_A 3 LVVFPFKHEH--PEVLLHNVRVAAA-HP-RVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQER--LGT-LRP- 74 (397)
T ss_dssp EEEEECCSSC--HHHHHHHHHHHHH-ST-TCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCC--CSS-SSS-
T ss_pred EEEEeCCccC--HHHHHHHHHHhcc-CC-CeEEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEeccc--CCC-CCC-
Confidence 5666787632 222 222221111 23 466799999874 44444422 1 4577665543321 000 012
Q ss_pred hhhHHHHHHHHHHHH-hccCCeEEEEecCCCc-cchhhhhhh
Q 013985 235 QLEAKMRLRALRIVR-EEKLDGIVMFADDSNM-HSMELFDEI 274 (432)
Q Consensus 235 ~~~~~qRN~AL~~IR-~~~~~GVVyFADDDNt-Ydl~LFdem 274 (432)
+.+ ..-+.+++|.. ..+ .-+|.|.|.|.. |+.+...+|
T Consensus 75 GkG-~Al~~G~~~Al~~a~-gd~vv~mDADlq~~~P~~i~~L 114 (397)
T 2bo4_A 75 GKG-DGMNTALRYFLEETQ-WERIHFYDADITSFGPDWITKA 114 (397)
T ss_dssp SHH-HHHHHHHHHHHHHCC-CSEEEECCTTCSSCCHHHHHHH
T ss_pred CHH-HHHHHHHHHHHHhCC-CCEEEEEcCCCCCCCHHHHHHH
Confidence 222 36788898876 433 348899999995 898877664
No 17
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=77.00 E-value=19 Score=35.80 Aligned_cols=108 Identities=17% Similarity=0.117 Sum_probs=63.9
Q ss_pred EEccCCccchhhHHHHhhhhhccCCCC---CeEEEEEeCCCCCHHHHHHHhhCCCceeeeecCCCCCCCcCCCc-hh---
Q 013985 164 VVTPTYVRTFQTLHLTGVMHSLMLVPY---DLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGRH-QL--- 236 (432)
Q Consensus 164 vVTPTy~R~~Q~a~LTRLa~TL~lVp~---~L~WIVVEd~~~t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r~-~~--- 236 (432)
||-+||.|+. |.|+-..|....+ +..-||..|+. ..+|.++++.-+.+.+|+-.+..-......++ +.
T Consensus 6 ViI~~yNRp~----l~~~L~sL~~~~p~~~~~~iivsdDgs-~~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g~~~y 80 (343)
T 1fo8_A 6 ILVIACDRST----VRRCLDKLLHYRPSAELFPIIVSQDCG-HEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGY 80 (343)
T ss_dssp EEEEESSCTT----HHHHHHHHHHHCSCTTTSCEEEEECTT-CHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHH
T ss_pred EEEEECCcHH----HHHHHHHHHhcCCCcCCcEEEEEECCC-CHHHHHHHHHcCCceEEEEcCCccccccchhhcCcccc
Confidence 5567899983 4444444444321 34567777775 67889999987766677632211000001111 11
Q ss_pred --hHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhcc
Q 013985 237 --EAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQN 276 (432)
Q Consensus 237 --~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR~ 276 (432)
.......||.++=+....+-|.|-|||-.-+..+|+-|.+
T Consensus 81 ~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~ 122 (343)
T 1fo8_A 81 YKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQA 122 (343)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHH
Confidence 1123556777765544578899999999988888755443
No 18
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=61.05 E-value=18 Score=34.54 Aligned_cols=82 Identities=16% Similarity=0.109 Sum_probs=49.2
Q ss_pred CCcEEEEEccCCccchhhHH-HHhhhhhccCCCCCeEEEEEeCCCCCHHHHHHHhhCCCceeeeecCCCCCCCcCCCchh
Q 013985 158 NPRTLIVVTPTYVRTFQTLH-LTGVMHSLMLVPYDLVWIVVEAGGVTNETASLIAKSKLRTIHVGVDQKMPASWGGRHQL 236 (432)
Q Consensus 158 ~~~~IivVTPTy~R~~Q~a~-LTRLa~TL~lVp~~L~WIVVEd~~~t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r~~~ 236 (432)
..+.|-||.|||.|...... |..|...|..-..++--|||+|++.. .+ . .
T Consensus 63 ~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdds~d~---------------------~f-----~--~- 113 (287)
T 2fy7_A 63 SPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDT---------------------IF-----N--R- 113 (287)
T ss_dssp CSCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSS---------------------CC-----C--H-
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEeCCCC---------------------cc-----c--h-
Confidence 45789999999999765443 33333222222236777999984320 01 0 1
Q ss_pred hHHHHHHHHHHHHhccCCeEEEEecCCCccchh
Q 013985 237 EAKMRLRALRIVREEKLDGIVMFADDSNMHSME 269 (432)
Q Consensus 237 ~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~ 269 (432)
...||.|+..--+....=+|.|.|+|-...-.
T Consensus 114 -a~a~N~G~~~al~~A~gd~i~flD~D~i~~~d 145 (287)
T 2fy7_A 114 -AKLLNVGFQEALKDYDYTCFVFSDVDLIPMND 145 (287)
T ss_dssp -HHHHHHHHHHHHHHSCCCEEEEECTTEEESBT
T ss_pred -hhhhhhHHHHHHHhCCCCEEEEECCCcccCCC
Confidence 13699988433233334589999999876655
No 19
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=50.17 E-value=28 Score=35.75 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=27.7
Q ss_pred EEEEEccCCccchhhHHHHhhhhhccCCCCCeEEEEEeCCCC
Q 013985 161 TLIVVTPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGGV 202 (432)
Q Consensus 161 ~IivVTPTy~R~~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~~ 202 (432)
.+-+|.|.|.=-.+ | |-..|...|.+.-+|||+||+.
T Consensus 54 klSIVVPvYNEe~~---l--LesVl~qi~~d~eIIlVdDGS~ 90 (391)
T 2wvl_A 54 QTAIVVPTRNERLK---L--LEGVLSGIPHEALILVASNSSP 90 (391)
T ss_dssp TEEEEEEESSCCHH---H--HHHHHHTSCTTSEEEEEECCCH
T ss_pred ceEEEEeccCcHHH---H--HHHHHhcCCCCceEEEEECCCC
Confidence 46678899885432 2 5566777787999999999973
No 20
>1ear_A Urease accessory protein UREE; chaperone, putative NI-chaperone, urease operon; 1.7A {Bacillus pasteurii} SCOP: b.107.1.1 d.58.38.1 PDB: 1eb0_A
Probab=34.24 E-value=82 Score=27.55 Aligned_cols=61 Identities=8% Similarity=0.117 Sum_probs=43.7
Q ss_pred CCcEEEEEccCCccchhhHHHHhhhhhc--cCCCCCeEEEEEeCCC----CCHHHHHHHhhCCCceeeeecCCCCCCCc
Q 013985 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSL--MLVPYDLVWIVVEAGG----VTNETASLIAKSKLRTIHVGVDQKMPASW 230 (432)
Q Consensus 158 ~~~~IivVTPTy~R~~Q~a~LTRLa~TL--~lVp~~L~WIVVEd~~----~t~~va~lL~~sgl~y~HL~~~~~~p~~~ 230 (432)
.+..+++|||.- ..+|.|+|+-| +|+| +-||++. ....+.++|++.|+.++....+ ||..+
T Consensus 74 ~~e~vl~i~~~d-----~~~l~r~ayhlGNRH~p-----~~i~~~~l~v~~D~vl~~mL~~lg~~v~~~~~~--fpe~~ 140 (147)
T 1ear_A 74 KLEKVYVIKPQT-----MQEMGKMAFEIGNRHTM-----CIIEDDEILVRYDKTLEKLIDEVGVSYEQSERR--FKEPF 140 (147)
T ss_dssp CCEEEEEEECSS-----HHHHHHHHHHHHHTTCC-----CEEETTEEEEECCHHHHHHHHHHTCEEEEEEEC--CCSCC
T ss_pred CCCcEEEEECCC-----HHHHHHHHHHHhCCCce-----eEEeCCEEEEcCcHHHHHHHHHCCCeeEEEEec--CCCCC
Confidence 455677787753 24688999888 7887 4556553 3567999999999999998653 55443
No 21
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=32.80 E-value=14 Score=31.65 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=14.0
Q ss_pred CCeEEEEe-cCCCccchhh
Q 013985 253 LDGIVMFA-DDSNMHSMEL 270 (432)
Q Consensus 253 ~~GVVyFA-DDDNtYdl~L 270 (432)
..|+++|| |||++|+..|
T Consensus 80 vkG~avFaS~d~sVy~a~l 98 (106)
T 3nrf_A 80 VEGDAIFASEDDAVYGASL 98 (106)
T ss_dssp EEEEEEEEESSSGGGGEEE
T ss_pred eeeEEEEeeCChhheeeeE
Confidence 47888887 6799998765
No 22
>3tj8_A Urease accessory protein UREE; metal binding protein; 1.59A {Helicobacter pylori} PDB: 3tj9_A 3tja_A 3l9z_A 3la0_A 3nxz_A 3ny0_A
Probab=28.59 E-value=90 Score=28.14 Aligned_cols=56 Identities=7% Similarity=0.067 Sum_probs=41.3
Q ss_pred CCcEEEEEccCCccchhhHHHHhhhhhc--cCCCCCeEEEEEeCC------CCCHHHHHHHhhCCCceeeeecC
Q 013985 158 NPRTLIVVTPTYVRTFQTLHLTGVMHSL--MLVPYDLVWIVVEAG------GVTNETASLIAKSKLRTIHVGVD 223 (432)
Q Consensus 158 ~~~~IivVTPTy~R~~Q~a~LTRLa~TL--~lVp~~L~WIVVEd~------~~t~~va~lL~~sgl~y~HL~~~ 223 (432)
.+..+++|+|.- ..+|.|+|+-| +|+| +.||++ .....+.++|++-|+.+++...+
T Consensus 76 ~~e~vl~i~~~~-----~~~l~r~ayhLGNRH~p-----~~i~~~~~~l~i~~D~vl~~mL~~lG~~v~~~~~p 139 (170)
T 3tj8_A 76 LDSEVIHIQAKS-----VAEVAKICYEIGNRHAA-----LYYGESQFEFKTPFEKPTLALLEKLGVQNRVLSSK 139 (170)
T ss_dssp CCEEEEEEECSS-----HHHHHHHHHHHHHHTCC-----EEECSSTTEEEEECCHHHHHHHHHHTCEEEEEEEC
T ss_pred CCCcEEEEeCCC-----HHHHHHHHHHHcCCcce-----EEECCCceEEEEcCcHHHHHHHHHCCCeeEEEEec
Confidence 445566777643 45789999888 6777 566665 24578999999999999998664
No 23
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=27.12 E-value=1.9e+02 Score=25.95 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhccCCeEEEEecCCCccchhhhhhhc
Q 013985 240 MRLRALRIVREEKLDGIVMFADDSNMHSMELFDEIQ 275 (432)
Q Consensus 240 qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFdemR 275 (432)
+||.|++.- ..-+|.|.|+|-.++-..+++|.
T Consensus 65 a~N~Gi~~A----~g~yl~fln~D~~~~~~~l~~l~ 96 (249)
T 2nxv_A 65 WHKQMLPRC----KGRYVIFCHEDVELVDRGYDDLV 96 (249)
T ss_dssp HHHHHGGGC----CSSEEEEEETTEECSSCCHHHHH
T ss_pred HHHHHHHhc----CCCEEEEECCCcccCccHHHHHH
Confidence 699998542 33489999999888777666643
No 24
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=24.84 E-value=2.1e+02 Score=28.73 Aligned_cols=94 Identities=17% Similarity=0.161 Sum_probs=56.4
Q ss_pred CcEEEEE--ccCCccchhhHHHHhhhhhccCCCCCeEEEEEeCCC--CCHHHHHHHhhCCCceeeeecCCCCCCCc--CC
Q 013985 159 PRTLIVV--TPTYVRTFQTLHLTGVMHSLMLVPYDLVWIVVEAGG--VTNETASLIAKSKLRTIHVGVDQKMPASW--GG 232 (432)
Q Consensus 159 ~~~IivV--TPTy~R~~Q~a~LTRLa~TL~lVp~~L~WIVVEd~~--~t~~va~lL~~sgl~y~HL~~~~~~p~~~--~~ 232 (432)
...|++- |||+-...+..+|.+.......++ +...|-||... .+.+..+.|++.|+...++++..--+... -.
T Consensus 105 i~~i~fgGGtpt~l~~~~l~~ll~~i~~~~~~~-~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~ 183 (457)
T 1olt_A 105 VSQLHWGGGTPTYLNKAQISRLMKLLRENFQFN-ADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVN 183 (457)
T ss_dssp EEEEEEEESCGGGSCHHHHHHHHHHHHHHSCEE-EEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHT
T ss_pred eEEEEEeCCCcccCCHHHHHHHHHHHHHhCCCC-CCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHHhC
Confidence 4456654 899865555444444433321243 45678889554 47899999999999999998864211100 01
Q ss_pred CchhhHHHHHHHHHHHHhccCC
Q 013985 233 RHQLEAKMRLRALRIVREEKLD 254 (432)
Q Consensus 233 r~~~~~~qRN~AL~~IR~~~~~ 254 (432)
|+. ...+-..|++.+++....
T Consensus 184 R~~-~~~~~~~ai~~~r~~G~~ 204 (457)
T 1olt_A 184 REQ-DEEFIFALLNHAREIGFT 204 (457)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCC
T ss_pred CCC-CHHHHHHHHHHHHHcCCC
Confidence 111 123567788899887543
No 25
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=23.47 E-value=1.2e+02 Score=22.10 Aligned_cols=77 Identities=9% Similarity=0.056 Sum_probs=46.0
Q ss_pred EEEeCCCC-CHHHHHHHhhCCCceeeeecCCCCCCCcCCCchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 013985 195 IVVEAGGV-TNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (432)
Q Consensus 195 IVVEd~~~-t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFde 273 (432)
+|||+... .....+.|++.|...... . .-..|++.++++..+-||.=.+..+.-.+++.++
T Consensus 5 liv~~~~~~~~~l~~~l~~~g~~v~~~--~----------------~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~ 66 (119)
T 2j48_A 5 LLLEEEDEAATVVCEMLTAAGFKVIWL--V----------------DGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQH 66 (119)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCEEEEE--S----------------CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHhCCcEEEEe--c----------------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHH
Confidence 46776653 567888999888644322 1 1235788888887776665444444445677777
Q ss_pred hcceeeeeEEEeeEEe
Q 013985 274 IQNVKWFGAVSVGILA 289 (432)
Q Consensus 274 mR~tk~vgvWPVGlv~ 289 (432)
+|+.....--||=+++
T Consensus 67 l~~~~~~~~~~ii~~~ 82 (119)
T 2j48_A 67 LREHQADPHPPLVLFL 82 (119)
T ss_dssp HHHTCCCSSCCCEEEE
T ss_pred HHhccccCCCCEEEEe
Confidence 7765322234555553
No 26
>1gmu_A UREE; metallochaperone; 1.5A {Klebsiella aerogenes} SCOP: b.107.1.1 d.58.38.1 PDB: 1gmw_A 1gmw_D 1gmv_A
Probab=21.42 E-value=1.1e+02 Score=26.72 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=39.8
Q ss_pred CcEEEEEccCCccchhhHHHHhhhhhc--cCCCCCeEEEEEeCCC----CCHHHHHHHhhCCCceeeeec
Q 013985 159 PRTLIVVTPTYVRTFQTLHLTGVMHSL--MLVPYDLVWIVVEAGG----VTNETASLIAKSKLRTIHVGV 222 (432)
Q Consensus 159 ~~~IivVTPTy~R~~Q~a~LTRLa~TL--~lVp~~L~WIVVEd~~----~t~~va~lL~~sgl~y~HL~~ 222 (432)
+..++.|||.- ..+|.|+|+-| +|+| +.||++. ....+.++|++.|+.++....
T Consensus 71 ~E~vl~v~~~~-----~~~l~r~ayhLGNRH~p-----~~i~~~~l~v~~D~vl~~mL~~lG~~v~~~~~ 130 (143)
T 1gmu_A 71 DEEVSVVRCDD-----PFMLAKACYALGNRHVP-----LQIMPGELRYHHDHVLDDMLRQFGLTVTFGQL 130 (143)
T ss_dssp EEEEEEEECSC-----HHHHHHHHHHHHHTTCC-----CEEETTEEEEECCHHHHHHHHTTTCCEEEEEE
T ss_pred CCcEEEEECCC-----HHHHHHHHHHHhCCcce-----eEEeCCEEEEcCcHHHHHHHHHcCCeeEEEEe
Confidence 34566777642 34689999888 7787 5666663 356899999999999998754
No 27
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=21.00 E-value=1.1e+02 Score=23.81 Aligned_cols=61 Identities=10% Similarity=0.147 Sum_probs=39.3
Q ss_pred EEEeCCCC-CHHHHHHHhhCCCceeeeecCCCCCCCcCCCchhhHHHHHHHHHHHHhccCCeEEEEecCCCccchhhhhh
Q 013985 195 IVVEAGGV-TNETASLIAKSKLRTIHVGVDQKMPASWGGRHQLEAKMRLRALRIVREEKLDGIVMFADDSNMHSMELFDE 273 (432)
Q Consensus 195 IVVEd~~~-t~~va~lL~~sgl~y~HL~~~~~~p~~~~~r~~~~~~qRN~AL~~IR~~~~~GVVyFADDDNtYdl~LFde 273 (432)
+||||... .....++|++.|..... +. .-..|++.++++..+-|| ..|.| .+++.++
T Consensus 22 livdd~~~~~~~l~~~L~~~g~~v~~--~~----------------~~~~al~~l~~~~~dlvi-~~~~~---g~~~~~~ 79 (137)
T 2pln_A 22 LLIEKNSVLGGEIEKGLNVKGFMADV--TE----------------SLEDGEYLMDIRNYDLVM-VSDKN---ALSFVSR 79 (137)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEEEE--ES----------------CHHHHHHHHHHSCCSEEE-ECSTT---HHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHcCcEEEE--eC----------------CHHHHHHHHHcCCCCEEE-EcCcc---HHHHHHH
Confidence 57787754 56788999988764432 21 123578888888777777 33333 2577777
Q ss_pred hcce
Q 013985 274 IQNV 277 (432)
Q Consensus 274 mR~t 277 (432)
||+.
T Consensus 80 l~~~ 83 (137)
T 2pln_A 80 IKEK 83 (137)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
Done!