BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013990
(432 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3A7T7|Y297_PELCD UPF0061 protein Pcar_0297 OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=Pcar_0297 PE=3 SV=1
Length = 492
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 378 LSRKTFAAFQDRFKLCKLD-----FGLTIQENKTENLPENMLCCIRLNEIDYSN 426
L+ ++ A F D F+ ++D GL +E+ +L +++L C++ N+ DY+N
Sbjct: 326 LANRSLATFPDIFQRLRMDGMRAKLGLFTKEDADMSLMQDLLTCMQQNQADYTN 379
>sp|Q5XI57|TTL10_RAT Protein polyglycylase TTLL10 OS=Rattus norvegicus GN=Ttll10 PE=2
SV=2
Length = 679
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 285 KDLPVHFQEHVNRIINDEVERVKGFPLDTI-NSFRERLK 322
KD V EH+NR IND+ + KG P D + +F +R++
Sbjct: 424 KDSTVWSMEHLNRYINDKFRKSKGLPRDWVFTTFTKRMQ 462
>sp|A4Q9F3|TTL10_MOUSE Protein polyglycylase TTLL10 OS=Mus musculus GN=Ttll10 PE=1 SV=1
Length = 704
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 275 LYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTI-NSFRERLK 322
LY L ES V EH+NR IND+ + KG P D + +F +R++
Sbjct: 416 LYTLLKEST-----VWTMEHLNRYINDKFRKTKGLPRDWVFTTFTKRMQ 459
>sp|Q90610|NEO1_CHICK Neogenin (Fragment) OS=Gallus gallus PE=2 SV=1
Length = 1443
Score = 33.1 bits (74), Expect = 4.2, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 19/115 (16%)
Query: 163 PKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLS 222
P+ SSL PL + SW+P E VRG +A + P A +
Sbjct: 724 PEVPSSLHVRPLVTSIVVSWTPPENQNIVVRG----------YAIGYGIGSPHAQTI--- 770
Query: 223 QRKIDHIARFVDLPVIDSSEE----LPSILVVNLQIPLYPAAIFQGENDGEGMNL 273
K+D+ R+ + +D S L + V IPLY +A+ + +D ++L
Sbjct: 771 --KVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHSDTSEVDL 823
>sp|P97603|NEO1_RAT Neogenin (Fragment) OS=Rattus norvegicus GN=Neo1 PE=2 SV=1
Length = 1377
Score = 32.7 bits (73), Expect = 5.1, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 19/115 (16%)
Query: 163 PKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLS 222
P+ SSL PL + SW+P E VRG +A + P A +
Sbjct: 708 PEVPSSLHVRPLVTSIVVSWTPPENQNIVVRG----------YAIGYGIGSPHAQTI--- 754
Query: 223 QRKIDHIARFVDLPVIDSSEE----LPSILVVNLQIPLYPAAIFQGENDGEGMNL 273
K+D+ R+ + +D S L + V IPLY +A+ + D ++L
Sbjct: 755 --KVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTDTSEVDL 807
>sp|P97798|NEO1_MOUSE Neogenin OS=Mus musculus GN=Neo1 PE=1 SV=1
Length = 1493
Score = 32.7 bits (73), Expect = 5.2, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 19/115 (16%)
Query: 163 PKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLS 222
P+ SSL PL + SW+P E VRG +A + P A +
Sbjct: 770 PEVPSSLHVRPLVTSIVVSWTPPENQNIVVRG----------YAIGYGIGSPHAQTI--- 816
Query: 223 QRKIDHIARFVDLPVIDSSEE----LPSILVVNLQIPLYPAAIFQGENDGEGMNL 273
K+D+ R+ + +D S L + V IPLY +A+ + D ++L
Sbjct: 817 --KVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTDTSEVDL 869
>sp|Q92859|NEO1_HUMAN Neogenin OS=Homo sapiens GN=NEO1 PE=1 SV=2
Length = 1461
Score = 32.7 bits (73), Expect = 5.2, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 19/115 (16%)
Query: 163 PKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLS 222
P+ SSL PL + SW+P E VRG +A + P A +
Sbjct: 739 PEVPSSLHVRPLVTSIVVSWTPPENQNIVVRG----------YAIGYGIGSPHAQTI--- 785
Query: 223 QRKIDHIARFVDLPVIDSSEE----LPSILVVNLQIPLYPAAIFQGENDGEGMNL 273
K+D+ R+ + +D S L + V IPLY +A+ + D ++L
Sbjct: 786 --KVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTDTSEVDL 838
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,402,075
Number of Sequences: 539616
Number of extensions: 6982591
Number of successful extensions: 15087
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 15085
Number of HSP's gapped (non-prelim): 17
length of query: 432
length of database: 191,569,459
effective HSP length: 120
effective length of query: 312
effective length of database: 126,815,539
effective search space: 39566448168
effective search space used: 39566448168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)