Query 013990
Match_columns 432
No_of_seqs 149 out of 232
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 00:46:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07059 DUF1336: Protein of u 100.0 2E-76 4.3E-81 565.3 20.8 222 182-423 1-227 (227)
2 PLN00188 enhanced disease resi 100.0 2.6E-67 5.6E-72 561.2 18.1 229 160-429 480-711 (719)
3 COG1521 Pantothenate kinase ty 14.9 3.9E+02 0.0085 26.9 6.0 107 270-399 19-131 (251)
4 PF06348 DUF1059: Protein of u 14.8 28 0.0006 27.2 -1.7 23 392-414 8-30 (57)
5 KOG1909 Ran GTPase-activating 13.3 1.1E+02 0.0024 32.6 1.7 65 362-426 29-101 (382)
6 PF04308 DUF458: Protein of un 12.9 1.2E+02 0.0027 28.1 1.7 32 366-402 96-127 (144)
7 COG4888 Uncharacterized Zn rib 9.8 1E+02 0.0022 27.4 0.0 14 12-25 4-17 (104)
8 PF00868 Transglut_N: Transglu 8.9 4E+02 0.0088 23.3 3.5 59 213-281 2-60 (118)
9 KOG2964 Arginase family protei 7.8 3.3E+02 0.0071 28.8 2.8 29 332-373 261-289 (361)
10 PHA03237 envelope glycoprotein 6.7 3.6E+02 0.0079 29.3 2.6 9 51-59 404-412 (424)
No 1
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=2e-76 Score=565.33 Aligned_cols=222 Identities=43% Similarity=0.745 Sum_probs=209.4
Q ss_pred cccCCCCCeEEcCCCccCCCccccCCCCCccceeeeeEeeeCcccchhhccCCCcccccCC-CCCeEEEEEEEcCCCccc
Q 013990 182 WSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSE-ELPSILVVNLQIPLYPAA 260 (432)
Q Consensus 182 Ws~p~~s~FkVRG~~Yl~DKkKvpA~~~~l~~lvgvDlF~s~~kidhIa~~~~lp~~~~~~-~~P~vfIVNiQlP~~p~~ 260 (432)
||+|++++|+|||+|||+||||+||+++ +|+++|||||+|++|++|||+|++++.+.... +.||+||||||||+||++
T Consensus 1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~-l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~~~P~~fIVNlqvP~~p~~ 79 (227)
T PF07059_consen 1 WSEPDASTFKVRGPNYLKDKKKVPAGPP-LFELVGVDLFKSDKKIDHIARRPSSPVQKALEKGVPFTFIVNLQVPGYPPS 79 (227)
T ss_pred CCCCCCCEEEEeCCCcccCCCCCcCCCc-ceeeEEEEEEecCCcchhhhhCcCCccccccccCCCcEEEEEEEccCCccc
Confidence 9999999999999999999999999985 99999999999999999999999999877654 589999999999999999
Q ss_pred ccCCCCCCCCeEEEEEEeeCccccCCCCcchHHHhhhhhhhhhhhhcCCCCCChhhhh-hhcceeeeecCCCcccchhhH
Q 013990 261 IFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFR-ERLKILSRLVNGEDLHLSTTE 339 (432)
Q Consensus 261 ~F~~~~DGeg~SlVlYF~~~e~~~~el~~~f~~l~~rf~~deve~vkgf~~d~~d~fR-~RfKLIp~VvnG~wi~l~~~~ 339 (432)
+| ++.||+|||+|+||++++++.++.+++|.++++||++++ +.+|+|| +||||||+|+||+|+
T Consensus 80 ~f-~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd---------~~~d~frn~RfKlIp~vv~gpwi------ 143 (227)
T PF07059_consen 80 MF-GEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGD---------EVEDAFRNERFKLIPRVVNGPWI------ 143 (227)
T ss_pred cc-cccccCCceEEEEEecCCccccccCchhHHHHHHHHhcC---------ccchhhhhccEEEEEEEcCCchh------
Confidence 99 999999999999999999998888889999999999743 1128899 899999999999999
Q ss_pred HHHHhhc-CCeeeeec--CceeeccCCCeEEEEEeccCchHHHHHHHHHhhhccceeEEeeeEeeecCCCCCCccceece
Q 013990 340 KKILNTY-NEKPVLSR--PQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCC 416 (432)
Q Consensus 340 r~l~~av-n~KPvLir--~q~~y~~G~nYlEiDVDI~sFS~iAr~~l~lv~g~~k~lvvDmGFvIEGq~eeELPE~LLG~ 416 (432)
+++++ |+||||+| ++|+||+|+||||||||||+ |+|||+++++|++|+++|||||||||||+++|||||+||||
T Consensus 144 --vr~~v~~~kP~lig~~~~~~y~~g~~y~E~dvdi~s-s~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~lLg~ 220 (227)
T PF07059_consen 144 --VRKAVYNGKPVLIGKKLQHRYFRGPNYLEIDVDIHS-SYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERLLGC 220 (227)
T ss_pred --hhhhhcCCCceeecCccceEEeeCCCeEEEEEEecc-HHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchheEeE
Confidence 56666 99999998 69999999999999999999 99999999999999999999999999999999999999999
Q ss_pred EEecccc
Q 013990 417 IRLNEID 423 (432)
Q Consensus 417 vRLn~iD 423 (432)
+||+|||
T Consensus 221 ~Rl~~id 227 (227)
T PF07059_consen 221 VRLNHID 227 (227)
T ss_pred EEeeecC
Confidence 9999998
No 2
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=2.6e-67 Score=561.18 Aligned_cols=229 Identities=24% Similarity=0.367 Sum_probs=211.4
Q ss_pred eeeecCCCCCccccCCCCCCCccccCCCCCeEEcCCCccCCCccccCCCCCccceeeeeEeeeCcccchhhccCCCcccc
Q 013990 160 LQRPKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVID 239 (432)
Q Consensus 160 l~~p~aG~~ip~~~~~~~~~~~Ws~p~~s~FkVRG~~Yl~DKkKvpA~~~~l~~lvgvDlF~s~~kidhIa~~~~lp~~~ 239 (432)
+.-..-|++++..+.++ ..+||++|++++|+|||+|||+||+|+||+++ +|+|+|||||++++|++|||+|++++++.
T Consensus 480 ~d~~~~~g~l~~~~~~~-~~ncWs~Pd~~~F~VRG~~Yl~Dk~KvPAg~~-l~~lvgvDwfks~~ridhVa~r~~~~vq~ 557 (719)
T PLN00188 480 IDLSCFSGNLRRDDRDK-ARDCWRISDGNNFKVRSKNFCYDKSKIPAGKH-LMDLVAVDWFKDTKRMDHVARRKGCAAQV 557 (719)
T ss_pred ccccccccccccCCCCC-CCCCccCCCCcceEEcCCCcccCCccccCCcc-ceeeEEEEEEcCCchhhHhhcCCCchhhh
Confidence 33344677788887765 79999999999999999999999999999985 89999999999999999999999999888
Q ss_pred cCCCCCeEEEEEEEcCCCcccccCCCCCCCCeEEEEEEeeCccccCCCCcchHHHhhhhhhhhhhhhcCCCCCChhhhh-
Q 013990 240 SSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFR- 318 (432)
Q Consensus 240 ~~~~~P~vfIVNiQlP~~p~~~F~~~~DGeg~SlVlYF~~~e~~~~el~~~f~~l~~rf~~deve~vkgf~~d~~d~fR- 318 (432)
+.++.||+||||||||+.|. ||+|+||++++ +++ +++++||++ |||+||
T Consensus 558 a~~k~~F~fiVNlQvPg~~~-----------ys~V~Yf~~~~-----l~~--~sLl~rF~~------------GDD~fRn 607 (719)
T PLN00188 558 AAEKGLFSFVVNLQVPGSTH-----------YSMVFYFVTKE-----LVP--GSLLQRFVD------------GDDEFRN 607 (719)
T ss_pred hcccCCcEEEEEEEccCCCc-----------eEEEEEEeccC-----CCC--chHHHHhcc------------CchhHhh
Confidence 88889999999999999876 99999999854 444 478999986 569999
Q ss_pred hhcceeeeecCCCcccchhhHHHHHhhcCCeeeeec--CceeeccCCCeEEEEEeccCchHHHHHHHHHhhhccceeEEe
Q 013990 319 ERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSR--PQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLD 396 (432)
Q Consensus 319 ~RfKLIp~VvnG~wi~l~~~~r~l~~avn~KPvLir--~q~~y~~G~nYlEiDVDI~sFS~iAr~~l~lv~g~~k~lvvD 396 (432)
+||||||.|++|+|| |+++||+||||+| ++|+||+|+|||||||||++ |.||++++++|+||+++||||
T Consensus 608 sRfKLIP~Iv~GpWi--------Vk~aVG~~p~llGk~l~~~Y~~g~nylEvdvDi~s-s~va~~v~~l~~g~~~~lvvD 678 (719)
T PLN00188 608 SRLKLIPSVPKGSWI--------VRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGS-STVANGVLGLVIGVITTLVVD 678 (719)
T ss_pred CceEEeccccCCceE--------EEeccCCcceEeeeecceeEecCCCeEEEEEeecc-HHHHHHHHHHHHhhhhheEEE
Confidence 899999999999999 7999999999999 59999999999999999999 999999999999999999999
Q ss_pred eeEeeecCCCCCCccceeceEEecccccCcccc
Q 013990 397 FGLTIQENKTENLPENMLCCIRLNEIDYSNYRQ 429 (432)
Q Consensus 397 mGFvIEGq~eeELPE~LLG~vRLn~iD~~~a~~ 429 (432)
|||+||||++|||||+|||||||++||+..|.-
T Consensus 679 ~af~ie~~~~eELPE~llG~~Rl~~i~~~~A~~ 711 (719)
T PLN00188 679 MAFLVQANTYEELPERLIGAVRVSHVELSSAIV 711 (719)
T ss_pred EEEEEecCChhhCchhheeeEEecccchhhccc
Confidence 999999999999999999999999999999864
No 3
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=14.89 E-value=3.9e+02 Score=26.90 Aligned_cols=107 Identities=21% Similarity=0.230 Sum_probs=58.7
Q ss_pred CeEEEEEEeeCccccCCCCcchHHHhhhhhhhhhhhhcCCCCCChhhhhh-hcceeeeecCCCcccchhhHHHHHhhcCC
Q 013990 270 GMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRE-RLKILSRLVNGEDLHLSTTEKKILNTYNE 348 (432)
Q Consensus 270 g~SlVlYF~~~e~~~~el~~~f~~l~~rf~~deve~vkgf~~d~~d~fR~-RfKLIp~VvnG~wi~l~~~~r~l~~avn~ 348 (432)
+-.++.+|++..+.... .+.+...++.+++. + .++. ...+|..|+ |-+. -..+..+.+-...
T Consensus 19 ~~~~~~~~r~~t~~~~~-~del~~~~~~l~~~------------~-~~~~~~~~~issvv--p~~~-~~~~~~~~~~f~~ 81 (251)
T COG1521 19 GGKVVQTWRLATEDLLT-EDELGLQLHNLFDG------------N-SVRDIDGIVISSVV--PPLG-IFLEAVLKEYFKV 81 (251)
T ss_pred CCeEEEEEeeccccccc-HHHHHHHHHHHhcc------------c-cccccccceeeccC--ccHH-HHHHHHHHHHhcc
Confidence 35788999988653221 12233333333321 1 2332 567888888 3221 2334467788888
Q ss_pred ee-eeecC---ceeeccCCCeEEEEEeccCchHHHHHHHHHhhhc-cceeEEeeeE
Q 013990 349 KP-VLSRP---QHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDR-FKLCKLDFGL 399 (432)
Q Consensus 349 KP-vLir~---q~~y~~G~nYlEiDVDI~sFS~iAr~~l~lv~g~-~k~lvvDmGF 399 (432)
+| ++..+ ...+...++|-|+.+|.-- . .+....-| -.-+|||+|=
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~p~elG~DR~~-n-----~vaA~~~~~~~~vVVD~GT 131 (251)
T COG1521 82 KPLVVISPKQLLGIRVLYDNPEELGADRIA-N-----AVAAYHKYGKAVVVVDFGT 131 (251)
T ss_pred CceeeechhhccCCcccCCChhhhcHHHHH-H-----HHHHHHHcCCcEEEEEcCC
Confidence 89 55553 2234456899999999744 2 22222111 1168889873
No 4
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=14.78 E-value=28 Score=27.18 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.4
Q ss_pred eeEEeeeEeeecCCCCCCcccee
Q 013990 392 LCKLDFGLTIQENKTENLPENML 414 (432)
Q Consensus 392 ~lvvDmGFvIEGq~eeELPE~LL 414 (432)
.++.|.+|+|.|.+++||-+++.
T Consensus 8 d~g~~C~~~~~a~tedEll~~~~ 30 (57)
T PF06348_consen 8 DVGPDCGFVIRAETEDELLEAVV 30 (57)
T ss_pred ccCCCCCeEEeeCCHHHHHHHHH
Confidence 45688999999999999988764
No 5
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=13.34 E-value=1.1e+02 Score=32.61 Aligned_cols=65 Identities=18% Similarity=0.334 Sum_probs=56.5
Q ss_pred CCCeEEEEEeccCchHHHHHHHHHhhhcccee-EEeeeEeeecCCCCCCccc-------eeceEEecccccCc
Q 013990 362 GENYFEIDLDVHRFSYLSRKTFAAFQDRFKLC-KLDFGLTIQENKTENLPEN-------MLCCIRLNEIDYSN 426 (432)
Q Consensus 362 G~nYlEiDVDI~sFS~iAr~~l~lv~g~~k~l-vvDmGFvIEGq~eeELPE~-------LLG~vRLn~iD~~~ 426 (432)
.+.|-+||++=.+|+.=|-+.+.-++...+.| ++++.=..-|+-.+|+||. |+||-+|..+|+++
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 45788999999999999999999988888766 4788878899999999986 57888999999987
No 6
>PF04308 DUF458: Protein of unknown function (DUF458) ; InterPro: IPR007405 This entry is represented by Bacteriophage KVP40, Orf299. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised, mainly bacterial, proteins. While the functions of these proteins are unknown, an analysis has suggested that they may form a novel family within the RNASE H-like superfamily []. These proteins appear to contain all the core secondary structural elements of the RNase H-like fold and share several conserved, possible active site, residues. It was suggested, therefore, that they function as nucleases. From the taxonomic distibution of these proteins it was further inferred that they may play a role in DNA repair under stressful conditions.
Probab=12.91 E-value=1.2e+02 Score=28.13 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=25.8
Q ss_pred EEEEEeccCchHHHHHHHHHhhhccceeEEeeeEeee
Q 013990 366 FEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQ 402 (432)
Q Consensus 366 lEiDVDI~sFS~iAr~~l~lv~g~~k~lvvDmGFvIE 402 (432)
+||.+||+. ..-.|..+.-+.|++.. |||.-.
T Consensus 96 ~EiHiDIg~-~g~T~~~i~E~vG~v~~----~G~~~k 127 (144)
T PF04308_consen 96 LEIHIDIGT-NGKTRELIKEVVGYVEG----MGFEAK 127 (144)
T ss_pred EEEEEEcCC-CCchHHHHHHHHHHHHH----CCceEE
Confidence 599999999 88888888888888775 666543
No 7
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=9.75 E-value=1e+02 Score=27.38 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=7.1
Q ss_pred hhhhhhhhhhcccc
Q 013990 12 KKLKSKRISKRRVS 25 (432)
Q Consensus 12 ~~~~~~~~~~~~~~ 25 (432)
||+|+|+++|||.+
T Consensus 4 rr~krr~~ik~~~~ 17 (104)
T COG4888 4 RRRKRRKIIKRRPQ 17 (104)
T ss_pred ccccccccCcccCc
Confidence 44455555555543
No 8
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=8.86 E-value=4e+02 Score=23.35 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=36.1
Q ss_pred ceeeeeEeeeCcccchhhccCCCcccccCCCCCeEEEEEEEcCCCcccccCCCCCCCCeEEEEEEeeCc
Q 013990 213 CPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSE 281 (432)
Q Consensus 213 ~lvgvDlF~s~~kidhIa~~~~lp~~~~~~~~P~vfIVNiQlP~~p~~~F~~~~DGeg~SlVlYF~~~e 281 (432)
+...|||+.......|=....+.+.+---++.||.+.+++.=|..|. .-.+.|.|.+-+
T Consensus 2 ~v~~vDl~~~~N~~~HhT~~y~~~~LVVRRGQ~F~i~l~f~r~~~~~----------~d~l~l~~~~G~ 60 (118)
T PF00868_consen 2 KVESVDLQSEENARAHHTDEYESPRLVVRRGQPFTITLRFNRPFDPS----------KDQLSLEFETGP 60 (118)
T ss_dssp EEEEEEE-HHHHHHHTT-TTTSSSSEEEETTSEEEEEEEESSS--TT----------TEEEEEEEEESS
T ss_pred eEEEEEeEehHhhhhhCccccCCCCEEEECCCEEEEEEEEcCCcCCC----------CcEEEEEEEEec
Confidence 45689999987655554443333333334678999999999884443 356777777653
No 9
>KOG2964 consensus Arginase family protein [Amino acid transport and metabolism]
Probab=7.82 E-value=3.3e+02 Score=28.77 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=22.9
Q ss_pred cccchhhHHHHHhhcCCeeeeecCceeeccCCCeEEEEEecc
Q 013990 332 DLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVH 373 (432)
Q Consensus 332 wi~l~~~~r~l~~avn~KPvLir~q~~y~~G~nYlEiDVDI~ 373 (432)
.+.+....+++++.+|.|+| |+-||||+-
T Consensus 261 ~~gi~~i~e~ir~~~G~k~v-------------YiSiDID~L 289 (361)
T KOG2964|consen 261 KIGIDPIVERIRQRVGDKLV-------------YISIDIDVL 289 (361)
T ss_pred hhhhHHHHHHHHHhcCCceE-------------EEEEeeccc
Confidence 34445556789999999999 888999985
No 10
>PHA03237 envelope glycoprotein M; Provisional
Probab=6.70 E-value=3.6e+02 Score=29.31 Aligned_cols=9 Identities=22% Similarity=0.357 Sum_probs=4.9
Q ss_pred ccccccccc
Q 013990 51 ASKEFAWFD 59 (432)
Q Consensus 51 ~~~~~awfd 59 (432)
.+.||.=+|
T Consensus 404 ~~d~e~iYd 412 (424)
T PHA03237 404 TDDEEPIYD 412 (424)
T ss_pred cccccchhh
Confidence 345555566
Done!