Query 013990
Match_columns 432
No_of_seqs 149 out of 232
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 03:29:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4day_C Fanconi anemia group M 21.5 24 0.00083 24.8 0.5 19 391-409 14-32 (37)
2 1tac_A TAT protein; transcript 12.2 1.4E+02 0.0048 24.5 2.8 11 16-26 50-60 (86)
3 3bqa_A Sensor protein PHOQ; hi 6.9 84 0.0029 28.2 -0.5 19 356-374 68-86 (148)
4 1tvs_A Transactivator protein; 6.5 1.6E+02 0.0055 23.6 1.0 14 12-25 52-65 (75)
5 2zou_A Spondin-1; beta-sandwic 6.3 2.1E+02 0.007 24.8 1.7 24 397-420 54-80 (149)
6 3npd_A Putative secreted prote 5.6 2.7E+02 0.0093 23.8 2.0 16 390-405 28-43 (118)
7 3coo_A Spondin-1; reelin-N dom 5.2 2E+02 0.0067 26.1 1.0 24 397-420 69-95 (180)
8 2dgb_A Hypothetical protein PU 4.7 3.6E+02 0.012 21.1 2.1 41 364-410 42-84 (84)
9 3l4n_A Monothiol glutaredoxin- 4.1 7.1E+02 0.024 20.6 3.6 57 340-396 5-77 (127)
10 3zyw_A Glutaredoxin-3; metal b 3.4 8E+02 0.027 19.5 3.2 55 339-396 6-78 (111)
No 1
>4day_C Fanconi anemia group M protein; OB fold, protein binding-hydrolase complex; 3.30A {Homo sapiens}
Probab=21.51 E-value=24 Score=24.81 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=15.3
Q ss_pred ceeEEeeeEeeecCCCCCC
Q 013990 391 KLCKLDFGLTIQENKTENL 409 (432)
Q Consensus 391 k~lvvDmGFvIEGq~eeEL 409 (432)
=++..|+||.++...+|.+
T Consensus 14 FSVnFDLGf~~~dSDde~~ 32 (37)
T 4day_C 14 FSVTFDLGFCSPDSDDEIL 32 (37)
T ss_pred EEEEeccccccCCcchhhh
Confidence 3789999999998776654
No 2
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=12.19 E-value=1.4e+02 Score=24.54 Aligned_cols=11 Identities=45% Similarity=0.477 Sum_probs=4.5
Q ss_pred hhhhhhccccc
Q 013990 16 SKRISKRRVSF 26 (432)
Q Consensus 16 ~~~~~~~~~~~ 26 (432)
+||+.|||.+.
T Consensus 50 kkRr~RRr~p~ 60 (86)
T 1tac_A 50 KKRRQRRRPSQ 60 (86)
T ss_dssp CSGGGSCTTCC
T ss_pred ccccccCCCCC
Confidence 33333455433
No 3
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=6.85 E-value=84 Score=28.16 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=16.5
Q ss_pred ceeeccCCCeEEEEEeccC
Q 013990 356 QHEFYLGENYFEIDLDVHR 374 (432)
Q Consensus 356 q~~y~~G~nYlEiDVDI~s 374 (432)
+..|.+.++|+|||.|++.
T Consensus 68 ~~eWLkk~gf~Eidtd~~~ 86 (148)
T 3bqa_A 68 QPDWLKSNGFHEIEADVND 86 (148)
T ss_dssp CGGGSSSCEEEEEEEEHHH
T ss_pred CHHHhcCCCcEEEecCcch
Confidence 5567788899999999997
No 4
>1tvs_A Transactivator protein; transcription regulation; NMR {Equine infectious anemia virus} SCOP: j.40.1.1 PDB: 1tvt_A
Probab=6.53 E-value=1.6e+02 Score=23.61 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=6.7
Q ss_pred hhhhhhhhhhcccc
Q 013990 12 KKLKSKRISKRRVS 25 (432)
Q Consensus 12 ~~~~~~~~~~~~~~ 25 (432)
++.|++|+.|||.+
T Consensus 52 ~~~RKKRrqRRr~p 65 (75)
T 1tvs_A 52 ASLRKKNKQRLKAI 65 (75)
T ss_dssp HHTHHHHHHHHHHT
T ss_pred hhHHHhhhcccCCc
Confidence 33444455455543
No 5
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=6.30 E-value=2.1e+02 Score=24.84 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=18.9
Q ss_pred eeEeeecCCCCCC---ccceeceEEec
Q 013990 397 FGLTIQENKTENL---PENMLCCIRLN 420 (432)
Q Consensus 397 mGFvIEGq~eeEL---PE~LLG~vRLn 420 (432)
.||+||++.++.. +...+|.+.+.
T Consensus 54 ~GFllqAr~~~~~~~~~~~~vG~F~~~ 80 (149)
T 2zou_A 54 RGFTLIALRENREGDKEEDHAGTFQII 80 (149)
T ss_dssp SEEEEEEEETTCCSCSGGGBCSEEEES
T ss_pred EEEEEEEEecCCccCCCCcceEEEEeC
Confidence 5999999887654 56789998874
No 6
>3npd_A Putative secreted protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CXS; 1.60A {Pseudomonas aeruginosa}
Probab=5.62 E-value=2.7e+02 Score=23.80 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=12.4
Q ss_pred cceeEEeeeEeeecCC
Q 013990 390 FKLCKLDFGLTIQENK 405 (432)
Q Consensus 390 ~k~lvvDmGFvIEGq~ 405 (432)
+..=++|-|+|+||+.
T Consensus 28 InEdiLDqgYTVeG~~ 43 (118)
T 3npd_A 28 INEDILDQGYTVEGNQ 43 (118)
T ss_dssp SSSSEEEEEEEEETTE
T ss_pred hhhHHhhcceeechHH
Confidence 3355899999999963
No 7
>3coo_A Spondin-1; reelin-N domain, cell adhesion, extracellular MAT glycoprotein, secreted; 2.00A {Homo sapiens} PDB: 2zot_A
Probab=5.23 E-value=2e+02 Score=26.12 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=18.9
Q ss_pred eeEeeecCCCCCC---ccceeceEEec
Q 013990 397 FGLTIQENKTENL---PENMLCCIRLN 420 (432)
Q Consensus 397 mGFvIEGq~eeEL---PE~LLG~vRLn 420 (432)
.||+||++.++.. +...+|.+.+.
T Consensus 69 ~GFlLqAr~~~~~~~~~~~~vGtF~~~ 95 (180)
T 3coo_A 69 RGFTLIALRENREGDKEEDHAGTFQII 95 (180)
T ss_dssp SCCEEEEEETTCCSSSGGGBCSEEECS
T ss_pred eEEEEEEEcCCCCccCCCCceeEEEec
Confidence 4999999887654 56789999864
No 8
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=4.66 E-value=3.6e+02 Score=21.10 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=20.9
Q ss_pred CeEEEEEeccCchHH-HHHHHHHhhhccceeEEe-eeEeeecCCCCCCc
Q 013990 364 NYFEIDLDVHRFSYL-SRKTFAAFQDRFKLCKLD-FGLTIQENKTENLP 410 (432)
Q Consensus 364 nYlEiDVDI~sFS~i-Ar~~l~lv~g~~k~lvvD-mGFvIEGq~eeELP 410 (432)
.|||++++..+ ..- ...+-.+| ..+.+-|+. .-+-++ +|||
T Consensus 42 K~~~l~~~~~~-~~~a~~~v~~~~-~LLaNpVie~y~~~~~----~~~~ 84 (84)
T 2dgb_A 42 KVLEIVFPAEN-LLEAEEKAKAMG-ALLANPVMEVYALEAL----KELP 84 (84)
T ss_dssp EEEEEEEECSS-HHHHHHHHHHHH-HHHSCTTTEEEEEEEE----EEEC
T ss_pred EEEEEEecCCC-HHHHHHHHHHHH-HHhCCccceEEEEEEe----cCCC
Confidence 57899998654 333 22344555 444444433 333333 6665
No 9
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=4.11 E-value=7.1e+02 Score=20.57 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=35.1
Q ss_pred HHHHhhcCCeeeeec--Cceeec-------c-----CCCeEEEEEeccCchHHHHHHHHHhhh--ccceeEEe
Q 013990 340 KKILNTYNEKPVLSR--PQHEFY-------L-----GENYFEIDLDVHRFSYLSRKTFAAFQD--RFKLCKLD 396 (432)
Q Consensus 340 r~l~~avn~KPvLir--~q~~y~-------~-----G~nYlEiDVDI~sFS~iAr~~l~lv~g--~~k~lvvD 396 (432)
+.+.+.++..||.+- +.|.|- . |..|-++|||...-..-.+..+....| .+..+.||
T Consensus 5 ~~~~~ii~~~~Vvvysk~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI~ 77 (127)
T 3l4n_A 5 KEYSLILDLSPIIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVN 77 (127)
T ss_dssp HHHHHHHTSCSEEEEECTTCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEET
T ss_pred HHHHHHHccCCEEEEEcCCCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEEC
Confidence 347778888888873 566652 1 568999999987422334455544433 34566655
No 10
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=3.43 E-value=8e+02 Score=19.45 Aligned_cols=55 Identities=11% Similarity=0.238 Sum_probs=34.3
Q ss_pred HHHHHhhcCCeeeee--c-----Cceeec---------cCCCeEEEEEeccCchHHHHHHHHHhhh--ccceeEEe
Q 013990 339 EKKILNTYNEKPVLS--R-----PQHEFY---------LGENYFEIDLDVHRFSYLSRKTFAAFQD--RFKLCKLD 396 (432)
Q Consensus 339 ~r~l~~avn~KPvLi--r-----~q~~y~---------~G~nYlEiDVDI~sFS~iAr~~l~lv~g--~~k~lvvD 396 (432)
+.+|.+.++..||++ . +.|.|- .|-.|-|+||+-+. -++..+....| .+..+.||
T Consensus 6 ~~~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~---~~~~~l~~~~g~~tvP~ifi~ 78 (111)
T 3zyw_A 6 NLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDE---EVRQGLKAYSSWPTYPQLYVS 78 (111)
T ss_dssp HHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCH---HHHHHHHHHHTCCSSCEEEET
T ss_pred HHHHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCH---HHHHHHHHHHCCCCCCEEEEC
Confidence 446788888888887 2 456552 36689999887643 34454444423 34455555
Done!