Query 013990
Match_columns 432
No_of_seqs 149 out of 232
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 03:29:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013990.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013990hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eucb1 c.23.4.1 (B:246-393) S 8.0 57 0.0041 27.0 1.1 27 324-352 21-47 (148)
2 d2nu7b1 c.23.4.1 (B:239-388) S 7.5 62 0.0045 26.7 1.1 27 324-352 21-47 (150)
3 d2gw6a1 c.52.2.1 (A:2-123) tRN 6.3 55 0.004 26.4 0.2 66 197-280 56-121 (122)
4 d2fsra1 d.108.1.1 (A:4-167) Pr 6.1 1.1E+02 0.008 22.6 1.9 23 397-421 142-164 (164)
5 d1mg7a1 d.14.1.6 (A:14-187) Ea 4.8 1E+02 0.0075 25.8 0.9 70 313-391 25-99 (174)
6 d1wika_ c.47.1.1 (A:) Thioredo 4.5 84 0.0061 23.8 0.1 34 341-374 7-56 (109)
7 d1ex0a1 b.1.18.9 (A:7-190) Tra 4.1 3.6E+02 0.026 22.4 4.1 60 211-281 38-101 (184)
8 d1om4a_ d.174.1.1 (A:) Nitric 3.7 3.2E+02 0.023 25.8 3.6 34 399-432 224-261 (418)
9 d3e7ma1 d.174.1.1 (A:77-497) N 3.6 3.1E+02 0.023 25.9 3.5 34 399-432 225-262 (421)
10 d2qqra1 b.34.9.1 (A:897-955) J 3.4 1.8E+02 0.013 20.6 1.1 22 355-376 14-42 (59)
No 1
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=7.96 E-value=57 Score=26.96 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=21.4
Q ss_pred eeeecCCCcccchhhHHHHHhhcCCeeee
Q 013990 324 LSRLVNGEDLHLSTTEKKILNTYNEKPVL 352 (432)
Q Consensus 324 Ip~VvnG~wi~l~~~~r~l~~avn~KPvL 352 (432)
|+.++||--+.+.. .=+++.+|+||+=
T Consensus 21 IG~i~NGAGlaMaT--mD~i~~~Gg~pAN 47 (148)
T d1eucb1 21 IACFVNGAGLAMAT--CDIIFLNGGKPAN 47 (148)
T ss_dssp EEEEESSHHHHHHH--HHHHHHTTCCBSE
T ss_pred EEEEecCCccchhH--HHHHHHcCCCeee
Confidence 89999997665544 4589999999974
No 2
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.48 E-value=62 Score=26.69 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=21.3
Q ss_pred eeeecCCCcccchhhHHHHHhhcCCeeee
Q 013990 324 LSRLVNGEDLHLSTTEKKILNTYNEKPVL 352 (432)
Q Consensus 324 Ip~VvnG~wi~l~~~~r~l~~avn~KPvL 352 (432)
|+.++||--+.+.. .=+++.+|+||+=
T Consensus 21 Ig~i~nGAGlamaT--mD~i~~~Gg~pAN 47 (150)
T d2nu7b1 21 IGCMVNGAGLAMGT--MDIVKLHGGEPAN 47 (150)
T ss_dssp EEEEESSHHHHHHH--HHHHHHTTCCBCE
T ss_pred EEEEEcCCccchhh--HHHHHHCCCCeeE
Confidence 88999997665544 4589999999984
No 3
>d2gw6a1 c.52.2.1 (A:2-123) tRNA-splicing endonuclease subunit Sen15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.34 E-value=55 Score=26.41 Aligned_cols=66 Identities=17% Similarity=0.213 Sum_probs=41.5
Q ss_pred ccCCCccccCCCCCccceeeeeEeeeCcccchhhccCCCcccccCCCCCeEEEEEEEcCCCcccccCCCCCCCCeEEEEE
Q 013990 197 YLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLY 276 (432)
Q Consensus 197 Yl~DKkKvpA~~~~l~~lvgvDlF~s~~kidhIa~~~~lp~~~~~~~~P~vfIVNiQlP~~p~~~F~~~~DGeg~SlVlY 276 (432)
||.-|+|.-.+. -++-|+-++.=.+-.++..+-.+..+|. .....|.-|++-|+=+. |-|+|
T Consensus 56 yL~gr~~~~~~~-qv~iP~p~~~sls~~~i~~~~~~~~~p~--~~~~~~~s~tLai~d~D---------------STIvY 117 (122)
T d2gw6a1 56 CLVGTEIEGEGL-QTVVPTPITASLSHNRIREILKASRKLQ--GDPDLPMSFTLAIVESD---------------STIVY 117 (122)
T ss_dssp EEEEESSTTCCC-CEEEEEETTCEEEHHHHHHHHHHHHHHT--TCSSCCCEEEEEEECTT---------------SCEEE
T ss_pred EEEcccccCCCc-cEEEeeccccccCHHHHHHHHHhccCCc--CCcCccceEEEEEEcCC---------------CeEEE
Confidence 666666665555 4788888877777777777754432222 12234556666677666 56788
Q ss_pred EeeC
Q 013990 277 FKLS 280 (432)
Q Consensus 277 F~~~ 280 (432)
|+++
T Consensus 118 Yrmt 121 (122)
T d2gw6a1 118 YKLT 121 (122)
T ss_dssp EEEE
T ss_pred EEcc
Confidence 8875
No 4
>d2fsra1 d.108.1.1 (A:4-167) Probable acetyltranferase Atu2435 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=6.08 E-value=1.1e+02 Score=22.62 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=18.0
Q ss_pred eeEeeecCCCCCCccceeceEEecc
Q 013990 397 FGLTIQENKTENLPENMLCCIRLNE 421 (432)
Q Consensus 397 mGFvIEGq~eeELPE~LLG~vRLn~ 421 (432)
+||++||..+.+-|+.+ .-|+|+
T Consensus 142 ~GF~~eg~~~~~~~~~~--~yr~~~ 164 (164)
T d2fsra1 142 IGGTLDPLAPRSDPEDL--VYRYHQ 164 (164)
T ss_dssp TTCEECTTSCCSSTTCE--EEEECC
T ss_pred CCCEEeeeEcccCCCce--EEeeCC
Confidence 59999999999888876 456553
No 5
>d1mg7a1 d.14.1.6 (A:14-187) Early switch protein XOL-1, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=4.76 E-value=1e+02 Score=25.84 Aligned_cols=70 Identities=21% Similarity=0.196 Sum_probs=40.8
Q ss_pred Chhhhh-hhcceeeeecCCCcccchhhHHHHHhhcCCeeeeecCceeeccCC---CeEEE-EEeccCchHHHHHHHHHhh
Q 013990 313 TINSFR-ERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGE---NYFEI-DLDVHRFSYLSRKTFAAFQ 387 (432)
Q Consensus 313 ~~d~fR-~RfKLIp~VvnG~wi~l~~~~r~l~~avn~KPvLir~q~~y~~G~---nYlEi-DVDI~sFS~iAr~~l~lv~ 387 (432)
.+..|| +.+-.-|.||+--.. ..-||| |=|++.-...--+-+ +=-+| +++-+.+.++.+.+++-++
T Consensus 25 ~~~~~~~~~~~~APHvV~i~~~--------g~MAVN-K~C~v~s~il~~r~pks~~eH~Idev~~~~hg~it~~iI~DlL 95 (174)
T d1mg7a1 25 DDPNFRNSKLAAAPHTVHMMDS--------GFLAIN-RQCLVKGKAILAREPKSSNEHMIDDLPKHAHDQHTLSILRDFI 95 (174)
T ss_dssp -------CEEEEEEEEEEETTT--------EEEEEE-EEEEEEEEEEESSCCSSGGGSEECCCCCCTTHHHHHHHHHHHH
T ss_pred CCCCcccchhccCCeEEeeccc--------ceeeee-eeEEEeeeeccccCCCchhhhhHHHhhHhhhcceeHHHHHHHH
Confidence 457899 799999999984443 245777 444442111111112 22478 7888999999999988887
Q ss_pred hccc
Q 013990 388 DRFK 391 (432)
Q Consensus 388 g~~k 391 (432)
+.++
T Consensus 96 e~mE 99 (174)
T d1mg7a1 96 DQLK 99 (174)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 7654
No 6
>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.53 E-value=84 Score=23.80 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=26.4
Q ss_pred HHHhhcCCeeeeec-------Cceeec---------cCCCeEEEEEeccC
Q 013990 341 KILNTYNEKPVLSR-------PQHEFY---------LGENYFEIDLDVHR 374 (432)
Q Consensus 341 ~l~~avn~KPvLir-------~q~~y~---------~G~nYlEiDVDI~s 374 (432)
.|...++..||++- |.|.|- .|-.|-|+|||-+.
T Consensus 7 ~i~~~i~~~~VvvF~Kgt~~~p~Cp~c~~ak~lL~~~~i~~~~~~v~~~~ 56 (109)
T d1wika_ 7 GLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDE 56 (109)
T ss_dssp CHHHHHTTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCH
T ss_pred HHHHHHhcCCEEEEeCCCCCCCCChHHHHHHHHHHhcCCCceEEEecccH
Confidence 47888999999983 457773 36799999998765
No 7
>d1ex0a1 b.1.18.9 (A:7-190) Transglutaminase N-terminal domain {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
Probab=4.11 E-value=3.6e+02 Score=22.37 Aligned_cols=60 Identities=7% Similarity=0.081 Sum_probs=37.1
Q ss_pred ccceeeeeEeeeCc----ccchhhccCCCcccccCCCCCeEEEEEEEcCCCcccccCCCCCCCCeEEEEEEeeCc
Q 013990 211 AYCPFAADVFLSQR----KIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSE 281 (432)
Q Consensus 211 l~~lvgvDlF~s~~----kidhIa~~~~lp~~~~~~~~P~vfIVNiQlP~~p~~~F~~~~DGeg~SlVlYF~~~e 281 (432)
++..+.||+|++.. +.+|--.+ +...+---++.||.+.+.+-=|..|. .-.+.++|.+-+
T Consensus 38 ~l~v~~vdl~~~~~e~N~~~HHTd~y-~~~~LIVRRGQpF~i~L~fnR~~~~~----------~D~l~l~~~~Gp 101 (184)
T d1ex0a1 38 FLNVTSVHLFKERWDTNKVDHHTDKY-ENNKLIVRRGQSFYVQIDFSRPYDPR----------RDLFRVEYVIGR 101 (184)
T ss_dssp SCCEEEEECCCCTTSHHHHHHTCTTS-SCSSEEEETTSEEEEEEEESSCCCTT----------TCCEEEEEECBS
T ss_pred eeEEEEEeeeccCccccchhhCcccc-CCCCEEEeCCCCEEEEEEecCCCCCC----------CCeEEEEEEeCC
Confidence 56889999999953 33333222 22222234567888888887777653 135777777653
No 8
>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.70 E-value=3.2e+02 Score=25.78 Aligned_cols=34 Identities=18% Similarity=0.450 Sum_probs=28.4
Q ss_pred EeeecCCC----CCCccceeceEEecccccCccccCCC
Q 013990 399 LTIQENKT----ENLPENMLCCIRLNEIDYSNYRQLGV 432 (432)
Q Consensus 399 FvIEGq~e----eELPE~LLG~vRLn~iD~~~a~~l~~ 432 (432)
++||+..+ =|+|+.++-=|-|.|.++.--..|||
T Consensus 224 Lviq~~g~~p~~feiP~elvlEV~i~HP~~~wf~~LgL 261 (418)
T d1om4a_ 224 LLLQANGNDPELFQIPPELVLEVPIRHPKFDWFKDLGL 261 (418)
T ss_dssp EEEECTTCCCEEECCCGGGCCEEECCCSSCTTGGGGCC
T ss_pred EEEEECCCCCeeEeCCHHHeeeecccCCCChhHHhcCC
Confidence 45666544 38999999999999999999988887
No 9
>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.64 E-value=3.1e+02 Score=25.91 Aligned_cols=34 Identities=18% Similarity=0.554 Sum_probs=28.4
Q ss_pred EeeecCCCC----CCccceeceEEecccccCccccCCC
Q 013990 399 LTIQENKTE----NLPENMLCCIRLNEIDYSNYRQLGV 432 (432)
Q Consensus 399 FvIEGq~ee----ELPE~LLG~vRLn~iD~~~a~~l~~ 432 (432)
++||+..++ |+|+.++-=|-|.|.++.--..|||
T Consensus 225 Lv~q~~g~~P~~feiP~elvlEV~i~HP~~~wf~~LgL 262 (421)
T d3e7ma1 225 LVLQADGQDPEVFEIPPDLVLEVTMEHPKYEWFQELGL 262 (421)
T ss_dssp EEEECTTCCCEEECCCGGGCCEEECCCSSCGGGGGGCC
T ss_pred EEEEeCCCCCeeeeCChhHeeEecccCCCChhHHhcCC
Confidence 556665543 8999999999999999999888887
No 10
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.44 E-value=1.8e+02 Score=20.59 Aligned_cols=22 Identities=32% Similarity=0.680 Sum_probs=17.2
Q ss_pred CceeeccC-------CCeEEEEEeccCch
Q 013990 355 PQHEFYLG-------ENYFEIDLDVHRFS 376 (432)
Q Consensus 355 ~q~~y~~G-------~nYlEiDVDI~sFS 376 (432)
....||++ ..|.||..|=+|||
T Consensus 14 kNgryY~c~V~~~~~qtfyeV~FdDgS~s 42 (59)
T d2qqra1 14 KNGRFYQCEVVRLTTETFYEVNFDDGSFS 42 (59)
T ss_dssp TTSSEEEEEEEEEEEEEEEEEEETTSCEE
T ss_pred cCCcEEEEEEEEeeeEEEEEEEecCCCcc
Confidence 35567764 37999999999987
Done!