Query 013992
Match_columns 432
No_of_seqs 357 out of 2600
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 03:31:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 3.2E-37 1.1E-41 297.5 26.5 383 23-421 4-418 (491)
2 3o7q_A L-fucose-proton symport 100.0 2.5E-34 8.6E-39 273.0 19.6 292 27-361 22-344 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 9.4E-36 3.2E-40 283.9 7.3 363 26-420 23-393 (451)
4 2gfp_A EMRD, multidrug resista 100.0 4.8E-32 1.7E-36 252.0 -3.0 261 34-341 3-264 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 3.4E-28 1.2E-32 234.3 15.4 356 52-421 35-434 (491)
6 2cfq_A Lactose permease; trans 99.9 2.3E-25 7.7E-30 209.7 -3.0 272 48-358 24-305 (417)
7 2xut_A Proton/peptide symporte 99.9 9.9E-24 3.4E-28 204.8 2.7 152 53-208 35-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 4.8E-14 1.6E-18 133.8 15.5 165 41-209 262-433 (451)
9 2cfq_A Lactose permease; trans 99.5 4.6E-14 1.6E-18 132.5 7.3 141 72-213 262-404 (417)
10 3o7q_A L-fucose-proton symport 99.4 2.5E-13 8.6E-18 128.3 9.0 154 50-209 277-432 (438)
11 4gc0_A D-xylose-proton symport 99.4 3.7E-13 1.3E-17 129.1 8.5 164 46-212 292-466 (491)
12 4aps_A DI-OR tripeptide H+ sym 99.4 1.3E-12 4.6E-17 125.3 9.5 158 50-212 302-475 (491)
13 2gfp_A EMRD, multidrug resista 99.0 2.7E-11 9.3E-16 111.8 0.0 149 41-196 209-363 (375)
14 2xut_A Proton/peptide symporte 98.9 2.7E-09 9.2E-14 103.1 8.7 137 72-208 338-501 (524)
15 2g9p_A Antimicrobial peptide l 57.6 3.4 0.00012 19.5 0.7 14 88-101 2-15 (26)
16 3arc_T Photosystem II reaction 26.3 69 0.0024 16.8 2.6 11 204-214 18-28 (32)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=3.2e-37 Score=297.45 Aligned_cols=383 Identities=33% Similarity=0.562 Sum_probs=284.4
Q ss_pred CCCChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccch-----hhhHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 013992 23 SWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVD-----RKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG 97 (432)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G 97 (432)
++++++.+.+.+..+++.++.++|...++..+|.+.++++.+. ....+.+++.+++.+|..+|++++|+++||+|
T Consensus 4 ~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~G 83 (491)
T 4gc0_A 4 QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG 83 (491)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC
T ss_pred CcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455677777777888899999999999999999988875432 23344589999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHH------------------HhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhH
Q 013992 98 RRTSILVADFLFFVGAVIMA------------------AAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGAL 159 (432)
Q Consensus 98 rr~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~ 159 (432)
||++++++.+++.+++++++ +++|+++++++|+++|++.|...+....+++|+.|+++|++.
T Consensus 84 Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~ 163 (491)
T 4gc0_A 84 RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKL 163 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhh
Confidence 99999999999999999998 478999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC-------CchHHHHHhhHHHHHHHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHh
Q 013992 160 VSTNGFLITSGQFLSYLINLAFTRAP-------GTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKV 232 (432)
Q Consensus 160 ~~~~~~~~~~g~~i~~~i~~~l~~~~-------~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 232 (432)
.++.+.+...|..+++.++....... ..||+.+....++.++..+..+++||+|+|+..+++.|++.+.+++.
T Consensus 164 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~ 243 (491)
T 4gc0_A 164 VSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKI 243 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHh
Confidence 99999999999999998887665432 24888998888888888888899999999999999999998887765
Q ss_pred CCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchh
Q 013992 233 YPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNR 312 (432)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (432)
......+++..+..+...++ ++.......++.++ .........+.++.+.+.+..+.|.+.+..+.. ..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 312 (491)
T 4gc0_A 244 MGNTLATQAVQEIKHSLDHG------RKTGGRLLMFGVGV----IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAS-TD 312 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHTTHHHHSCCTH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCC-HH
T ss_pred cCCchhHHHHHHHHHHHHhh------hhhhhHHHHhcccH----HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCC-cc
Confidence 43322222211111111111 11111122222222 233445556677778888888888888877655 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHHHHhccCCCCCccchhcc--cccccccccccc
Q 013992 313 TALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVET--SHFSNLTCPDYS 390 (432)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 390 (432)
..........+..+++.++.+++.||+|||+.+..+.....++++.+.............+..+.. ..+.....+...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
T 4gc0_A 313 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCW 392 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHH
Confidence 556667777888999999999999999999999998888888877776655444332222211111 111111122222
Q ss_pred cccccCccchhhhhccCCCCccccccccccc
Q 013992 391 SAATADRWDCMKCLKASSPDCGFCASHSNKV 421 (432)
Q Consensus 391 ~~~~~~~~~~~~~~r~~~~~~g~~~~~~~~~ 421 (432)
...+|++|+ +.|++ +.|++++..+..
T Consensus 393 ~~~~E~fPt---~~R~~--~~g~~~~~~~~~ 418 (491)
T 4gc0_A 393 VLLSEIFPN---AIRGK--ALAIAVAAQWLA 418 (491)
T ss_dssp HHHHHSSCT---TTHHH--HHHHHHHHHHHH
T ss_pred HHHHHhCCH---hHHHH--HHHHHHHHHHHH
Confidence 334677776 99999 999987765543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=2.5e-34 Score=273.05 Aligned_cols=292 Identities=14% Similarity=0.082 Sum_probs=240.6
Q ss_pred hhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHH
Q 013992 27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD 106 (432)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~ 106 (432)
++++..+..+++..+..+++....++.+|.+.+++|.+..+. +++.+.+.++..+++++.|+++||+|||++++.+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~ 98 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA---GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL 98 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH---HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHH
Confidence 344556666777778888888899999999999999999888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHH---HHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhcc-
Q 013992 107 FLFFVGAVIM---AAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT- 182 (432)
Q Consensus 107 ~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~- 182 (432)
++.+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 178 (438)
T 3o7q_A 99 FLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCc------------------------hHHHHHhhHHHHHHHHHHHhh--cCCCHHHHHHcCCHHHHHHHHHHhCCCC
Q 013992 183 RAPGT------------------------WRWMLGVAGIPALLQFILMLL--LPESPRWLYRKGREEEAQAILRKVYPAH 236 (432)
Q Consensus 183 ~~~~~------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (432)
+..+. ||+.|++.+...++..++.++ .||+++. + +
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~-~--------------- 239 (438)
T 3o7q_A 179 SNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---N-H--------------- 239 (438)
T ss_dssp TSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---C-C---------------
T ss_pred cccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---c-c---------------
Confidence 66554 999998887766666555444 3554320 0 0
Q ss_pred chHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHH-HHHcCCCchhHHH
Q 013992 237 EVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTI-VQLSGFASNRTAL 315 (432)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 315 (432)
+++++++.+...++.+|+|+++...+..++.. ........+.|.| +++..+.+..+++
T Consensus 240 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~ 298 (438)
T 3o7q_A 240 ----------------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYV-----GAQTACWSYLIRYAVEEIPGMTAGFAA 298 (438)
T ss_dssp ----------------CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred ----------------ccccccchhhhHHHHHhChHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhccCCcchhHHH
Confidence 00111223345678889998877555433332 2556777888999 8888677788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHHHHHH
Q 013992 316 LLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSA 361 (432)
Q Consensus 316 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 361 (432)
.......++.+++.++.+++.||++||+.+..+..+..++++++..
T Consensus 299 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 344 (438)
T 3o7q_A 299 NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF 344 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888777776655544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=9.4e-36 Score=283.94 Aligned_cols=363 Identities=13% Similarity=0.051 Sum_probs=263.4
Q ss_pred ChhHHHHHHHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHH
Q 013992 26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA 105 (432)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~ 105 (432)
++++++.+..+++..+..+++.....+.+|.+.+++ .+..+. +++.+++.++..++++++|+++||+|||++++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 98 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL---GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH---HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH---HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHH
Confidence 345677778888888999999999999999999999 888888 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH----hCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 013992 106 DFLFFVGAVIMAA----APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF 181 (432)
Q Consensus 106 ~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l 181 (432)
.++.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCchHHHHHhhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCcc
Q 013992 182 TRAPGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSE 260 (432)
Q Consensus 182 ~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (432)
.+..++||+.|++.++..++..++ ++++||+|+....+++.+.. .+ .++ + .+++++++...+
T Consensus 179 ~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~-~-----~~~~~~~~~~~~ 241 (451)
T 1pw4_A 179 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------ND-YPD-D-----YNEKAEQELTAK 241 (451)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------CC--------------------CCT
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc----------cc-ccc-c-----chhhhhcccccc
Confidence 665434999999998877766555 67788886532111111000 00 000 0 000011111112
Q ss_pred chhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 013992 261 KINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT- 339 (432)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~- 339 (432)
+...++.++++.++...+..++.. ........+.|.|+++..+.+..+.+.......++.+++.++.+++.||+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~ 316 (451)
T 1pw4_A 242 QIFMQYVLPNKLLWYIAIANVFVY-----LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF 316 (451)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHcCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222567788888776554443333 35677788899999987677788888999999999999999999999999
Q ss_pred -CCchhhHhHHHHHH-HHHHHHHHHHhccCCCCCccchhcccccccccccccccccccCccchhhhhccCCCCccccccc
Q 013992 340 -GRKKLLVISLSGVI-LSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASH 417 (432)
Q Consensus 340 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~ 417 (432)
++|+.+..+..+.. +++.++... ...+.+......+..+.+.....+.......+.. |++.|++ +.|+.+..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~--~~~~~~~~ 390 (451)
T 1pw4_A 317 RGNRGATGVFFMTLVTIATIVYWMN-PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA---PKKAAGT--AAGFTGLF 390 (451)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTTSC-CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS---CTTHHHH--HHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHh---chhhhhh--HHHHHHHH
Confidence 99888877666555 333332221 1112122222222333322222222223334444 4488999 88887665
Q ss_pred ccc
Q 013992 418 SNK 420 (432)
Q Consensus 418 ~~~ 420 (432)
.+.
T Consensus 391 ~~~ 393 (451)
T 1pw4_A 391 GYL 393 (451)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96 E-value=4.8e-32 Score=251.96 Aligned_cols=261 Identities=15% Similarity=0.079 Sum_probs=217.5
Q ss_pred HHHHHhhcccceeccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHH
Q 013992 34 FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA 113 (432)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 113 (432)
..+++..+..+++.....+.+|.+.+++|.+..+. +++.+.+.++..+++++.|+++||+|||++++.+..+..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV---QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH---HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 44556667778888889999999999999998888 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Q 013992 114 VIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLG 193 (432)
Q Consensus 114 ~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~ 193 (432)
++.++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++++.+..+ ||+.|+
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~ 158 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYL 158 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988766 999999
Q ss_pred hhHHHHHHHHHH-HhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccc
Q 013992 194 VAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT 272 (432)
Q Consensus 194 ~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (432)
+.++..++..+. .+++||+++.. +++++.+.+.++.+|+|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~ 200 (375)
T 2gfp_A 159 FLLVLCAGVTFSMARWMPETRPVD--------------------------------------APRTRLLTSYKTLFGNSG 200 (375)
T ss_dssp HHHHHHHHHHCCCCCSSCCCSTTT--------------------------------------CCCCCTTTCSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcccCCCC--------------------------------------cccccHHHHHHHHhcCcc
Confidence 988877776663 56678875310 011122334567778887
Q ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 013992 273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGR 341 (432)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 341 (432)
++...+..+.. .........+.|.|+++..+.++.+.+.......++.+++.++.+++.||.++
T Consensus 201 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 201 FNCYLLMLIGG-----LAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred hHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655443333 22556677778888777555567778888888889999999999999998876
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=3.4e-28 Score=234.32 Aligned_cols=356 Identities=16% Similarity=0.067 Sum_probs=216.9
Q ss_pred hhhhhhhhc-----cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcc-ccchHHHHHHHHHHHHHHHHHHHhCChhHH
Q 013992 52 GALLYIRDD-----FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR-FGRRTSILVADFLFFVGAVIMAAAPNPGAL 125 (432)
Q Consensus 52 ~~~~~i~~~-----~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 125 (432)
...+++.++ +|.+..+. +++.+.+.++..+++++.|+++|| +|||++++.+.++.+++.+++++++|++.+
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATA---ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASAL 111 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHH
T ss_pred HHHHHHHhccchhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 334445555 99988888 999999999999999999999999 899999999999999999999999999999
Q ss_pred HHHHhhhhccccchhhhHHHHHHhcCCccc--chhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHH
Q 013992 126 ITGRVFVGLGVGMASMTSPLYISEASPAKI--RGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQF 203 (432)
Q Consensus 126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~ 203 (432)
+++|+++|++.+...+...+++.|++|+++ |+.++++++.+..+|..++|.+++.+.+..+ ||+.|++.++..++..
T Consensus 112 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~ 190 (491)
T 4aps_A 112 FGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG-YHVAFSLAAIGMFIGL 190 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988 7778888999999999999999999988776 9999999887766665
Q ss_pred HHHhhc-CCCH----HHHHHcCCHHHHHHHHHH----------------hCCCCchHHHHHHHH---HHhH-HHHHHccC
Q 013992 204 ILMLLL-PESP----RWLYRKGREEEAQAILRK----------------VYPAHEVETEIRDLK---ESVD-KEIEEEGS 258 (432)
Q Consensus 204 ~~~~~~-~e~~----~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~---~~~~-~~~~~~~~ 258 (432)
+..++. ++.. +...++.+.++..+..+. .....+.+....... .... .......+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (491)
T 4aps_A 191 LVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMIS 270 (491)
T ss_dssp HHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhh
Confidence 554332 2211 000011122222222221 001111111000000 0000 00000001
Q ss_pred ccchhHHHhhcccchhHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013992 259 SEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDR 338 (432)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 338 (432)
+++....+..+....+...+.. +..+..+.....+.|.|.++..+.+....+.......+..+++.++.+++.||
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 345 (491)
T 4aps_A 271 SVKVTSTEHLRVVSYIPLFIAA-----VLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA 345 (491)
T ss_dssp -----------CTTHHHHHHHH-----HHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHH-----HHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH
Confidence 1111111111111111111111 11122334444566778877655554556666777788888999999999999
Q ss_pred hCCchhhH-----hHHHHHHHHHHHHHHHHhc------cCCCCCccchhcccccccccccccccccccCccchhhhhccC
Q 013992 339 TGRKKLLV-----ISLSGVILSLGVLSAVFHE------TTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKAS 407 (432)
Q Consensus 339 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 407 (432)
++||+... .+..+..+++.++...... .+.+......++.+.+.....+....... +..|++.|++
T Consensus 346 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~---~~~p~~~~g~ 422 (491)
T 4aps_A 346 WKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTT---KLAPKAFNSQ 422 (491)
T ss_dssp TTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHH---HHTTTTCSSS
T ss_pred HhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHH---HhCCHHHHHH
Confidence 99986554 5556566655554443211 11111122222222222222222222223 3455599999
Q ss_pred CCCccccccccccc
Q 013992 408 SPDCGFCASHSNKV 421 (432)
Q Consensus 408 ~~~~g~~~~~~~~~ 421 (432)
+.|+.....+..
T Consensus 423 --~~g~~~~~~~~g 434 (491)
T 4aps_A 423 --MMSMWFLSSSVG 434 (491)
T ss_dssp --STHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
Confidence 999876655443
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.89 E-value=2.3e-25 Score=209.75 Aligned_cols=272 Identities=12% Similarity=0.038 Sum_probs=171.2
Q ss_pred cccchhhhh-hhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHH---HHHHhCCh-
Q 013992 48 GVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV---IMAAAPNP- 122 (432)
Q Consensus 48 ~~~~~~~~~-i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~---~~~~~~~~- 122 (432)
....+.+|. +.+++|.+..+. +++.+.+.++..++++++|+++||+|||++++.+..+.+++.. ...+.+..
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDT---GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ 100 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTS---HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455565 556789998888 9999999999999999999999999999999998887755321 11222211
Q ss_pred hHHHHHHhhhhccccchhhhHHHHHHhcCCc--ccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHH
Q 013992 123 GALITGRVFVGLGVGMASMTSPLYISEASPA--KIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPAL 200 (432)
Q Consensus 123 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~ 200 (432)
..+...+.+.|++.+...+.......++.++ ++|+...+.......+|..++|.+++++.+. +||+.|++.++..+
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~--~~~~~f~~~~~~~~ 178 (417)
T 2cfq_A 101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFWLGSGCAL 178 (417)
T ss_dssp TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH--CSHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHH
Confidence 1233455666665555444444444444433 3457777777777788999999999988764 49999998877655
Q ss_pred HHHHHHhhcCCCHHHHHHcCCHHHHHHHHHHhCCCCchHHHHHHHHHHhHHHHHHccCccchhHHHhhcccchhHHHHHH
Q 013992 201 LQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAG 280 (432)
Q Consensus 201 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (432)
+..+..++.+|+++. +.+.++ . +++++++....+.++.+++|+++...+..
T Consensus 179 ~~~~~~~~~~~~~~~---~~~~~~-----------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (417)
T 2cfq_A 179 ILAVLLFFAKTDAPS---SATVAN-----------A---------------VGANHSAFSLKLALELFRQPKLWFLSLYV 229 (417)
T ss_dssp THHHHSCSSCCCCSC---SSCSSS-----------S---------------SSSCCCCCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCccccc---cccccc-----------c---------------cccccccccHHHHHHHhcCCchhhHHHHH
Confidence 555554444443210 000000 0 00000111223456778888877654432
Q ss_pred HHHHHHhhhcchHHHHHhHHHHHHHcCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhhHhHHHHHHHHHH
Q 013992 281 VGLQVFQQFVGINTVMYYSPTIVQLSGFA---SNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLG 357 (432)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 357 (432)
+.... .+.....+.|.|+++.... +....+.......++.+++.++.++++||++||+.+..+..+..+...
T Consensus 230 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~ 304 (417)
T 2cfq_A 230 IGVSC-----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII 304 (417)
T ss_dssp HHHHH-----HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 22221 2334444577777665332 123445666667778889999999999999999988877766665543
Q ss_pred H
Q 013992 358 V 358 (432)
Q Consensus 358 ~ 358 (432)
.
T Consensus 305 ~ 305 (417)
T 2cfq_A 305 G 305 (417)
T ss_dssp H
T ss_pred H
Confidence 3
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.87 E-value=9.9e-24 Score=204.78 Aligned_cols=152 Identities=18% Similarity=0.322 Sum_probs=136.5
Q ss_pred hhhhhhhccc------cchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc-cchHHHHHHHHHHHHHHHHHHHhC-ChhH
Q 013992 53 ALLYIRDDFK------SVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVADFLFFVGAVIMAAAP-NPGA 124 (432)
Q Consensus 53 ~~~~i~~~~~------~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~ 124 (432)
..+++.+++| .+..+. +++.+.+.++..++.++.|+++||+ |||+++..+.++.+++.++.++++ +++.
T Consensus 35 l~~~l~~~~~~~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (524)
T 2xut_A 35 LTPFLMTALLLSIPEELRGAVA---KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQG 111 (524)
T ss_dssp HHHHHHHSCSSCCSSSTTTTTH---HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHHHHhccccccccCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 3345677888 888888 9999999999999999999999999 999999999999999999999999 9999
Q ss_pred HHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHH---HHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHH
Q 013992 125 LITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVST---NGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALL 201 (432)
Q Consensus 125 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~---~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~ 201 (432)
+++.|+++|++.+...+...+++.|++|+++|+++.+. .+....+|..++|.+++.+.+..+ ||+.|++.++..++
T Consensus 112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~~ 190 (524)
T 2xut_A 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-AAVAFGIPGVLMFV 190 (524)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876666 889999999999999999988776 99999998887766
Q ss_pred HHHHHhh
Q 013992 202 QFILMLL 208 (432)
Q Consensus 202 ~~~~~~~ 208 (432)
..+.+++
T Consensus 191 ~~~~~~~ 197 (524)
T 2xut_A 191 ATVFFWL 197 (524)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 6655443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.56 E-value=4.8e-14 Score=133.75 Aligned_cols=165 Identities=18% Similarity=0.131 Sum_probs=137.3
Q ss_pred cccceeccccchhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccc--cchHHHHHHHHHHH-HHHHHH
Q 013992 41 LLFGYDTGVISGALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF--GRRTSILVADFLFF-VGAVIM 116 (432)
Q Consensus 41 ~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~ 116 (432)
+.............|.+.++ +|.+..+. +++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (451)
T 1pw4_A 262 VFVYLLRYGILDWSPTYLKEVKHFALDKS---SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 338 (451)
T ss_dssp HHHHHHHHHHHHHHHHHBTTBSCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 33334444455666766655 88888887 9999999999999999999999999 99999888877776 666666
Q ss_pred HHh--CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHH-HHHHHHHHHhhccCCCCchHHHHH
Q 013992 117 AAA--PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITS-GQFLSYLINLAFTRAPGTWRWMLG 193 (432)
Q Consensus 117 ~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~-g~~i~~~i~~~l~~~~~~wr~~f~ 193 (432)
.+. .+.+.+.+..++.|++.+...+....++.|.+|+++|++++++.+....+ |..+++.+.+.+.+..+ |+..|+
T Consensus 339 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~ 417 (451)
T 1pw4_A 339 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFM 417 (451)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHH
T ss_pred HHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence 665 36777888888999998888888889999999999999999999999999 99999999999998887 999999
Q ss_pred hhHHHHHHHHHHHhhc
Q 013992 194 VAGIPALLQFILMLLL 209 (432)
Q Consensus 194 ~~~~~~~~~~~~~~~~ 209 (432)
+.++..++..++.+++
T Consensus 418 ~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 418 VMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888877777665544
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.47 E-value=4.6e-14 Score=132.50 Aligned_cols=141 Identities=12% Similarity=0.095 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhhccccchhhhHHHHHHhcC
Q 013992 72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS 151 (432)
Q Consensus 72 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~ 151 (432)
++..+...++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....++.|.+
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 77778888888899999999999999999999999888888777788888888888888888887777777788999999
Q ss_pred CcccchhHHHH-HHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHH-HhhcCCCH
Q 013992 152 PAKIRGALVST-NGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPESP 213 (432)
Q Consensus 152 ~~~~R~~~~~~-~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~ 213 (432)
|++.|+.+.+. ++....+|..++|.+++++.+..+ ++..|.+.++..++..++ ++..||++
T Consensus 342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999988 477888999999999999887665 888998888877777666 44456653
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.42 E-value=2.5e-13 Score=128.28 Aligned_cols=154 Identities=12% Similarity=-0.012 Sum_probs=123.6
Q ss_pred cchhhhhh-h-hccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHhCChhHHHH
Q 013992 50 ISGALLYI-R-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALIT 127 (432)
Q Consensus 50 ~~~~~~~i-~-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (432)
.....|.+ . +.+|.+..+. ++..+...++..++.++.|+++||+|||+++..+.++..++.++..+.++.+.++.
T Consensus 277 ~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (438)
T 3o7q_A 277 CWSYLIRYAVEEIPGMTAGFA---ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA 353 (438)
T ss_dssp HHHHHHHHHHHHSTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHhhhccCCcchhHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 33444544 4 4458888888 89999999999999999999999999999999999999999988888887766554
Q ss_pred HHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHhhHHHHHHHHHHHh
Q 013992 128 GRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILML 207 (432)
Q Consensus 128 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~ 207 (432)
. ++.|++.+...+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..++++..|++.++..++..+..+
T Consensus 354 ~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3o7q_A 354 L-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR 430 (438)
T ss_dssp H-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 4 8889999999999999999999976 888888776 566999999999999988765588888876655444444333
Q ss_pred hc
Q 013992 208 LL 209 (432)
Q Consensus 208 ~~ 209 (432)
..
T Consensus 431 ~~ 432 (438)
T 3o7q_A 431 FR 432 (438)
T ss_dssp TC
T ss_pred HH
Confidence 33
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.40 E-value=3.7e-13 Score=129.14 Aligned_cols=164 Identities=12% Similarity=0.057 Sum_probs=115.2
Q ss_pred eccccchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHh---C-C
Q 013992 46 DTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA---P-N 121 (432)
Q Consensus 46 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~-~ 121 (432)
....+....|.+.++.+.+..+. ........+...++.++.+++.||+|||+.++.+.....++.+..+.. . +
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~ 368 (491)
T 4gc0_A 292 GINVVLYYAPEVFKTLGASTDIA---LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP 368 (491)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhhHHHhcchHHHHhcCCCccch---hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc
Confidence 33445556677777777766666 556666777888999999999999999999999988888877665432 1 2
Q ss_pred hhHHHHHHhh-hhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC-----chHHHHHhh
Q 013992 122 PGALITGRVF-VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-----TWRWMLGVA 195 (432)
Q Consensus 122 ~~~~~~~r~l-~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~-----~wr~~f~~~ 195 (432)
....++.-++ .+.......+....+.+|.+|++.|++++++......+|..+++.+.+.+.+... ++.+.|++.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~ 448 (491)
T 4gc0_A 369 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIY 448 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 2222222222 2222222456777899999999999999999999999999888877766544210 244567777
Q ss_pred HHHHHHHHHH-HhhcCCC
Q 013992 196 GIPALLQFIL-MLLLPES 212 (432)
Q Consensus 196 ~~~~~~~~~~-~~~~~e~ 212 (432)
+.++++..+. ++++||+
T Consensus 449 ~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 449 GCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHheecCC
Confidence 7777766655 7889999
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.36 E-value=1.3e-12 Score=125.29 Aligned_cols=158 Identities=13% Similarity=0.066 Sum_probs=118.9
Q ss_pred cchhhhhhh-hccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHH-----HHHHHHHHHHHHHHHh----
Q 013992 50 ISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSIL-----VADFLFFVGAVIMAAA---- 119 (432)
Q Consensus 50 ~~~~~~~i~-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~---- 119 (432)
....+|... +.++.+..+. +++.+...++..++.++.+++.||+|||+... .+.++.+++.++....
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (491)
T 4aps_A 302 GSVVLATFAAERVDSSWFPV---SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY 378 (491)
T ss_dssp GGTHHHHHHHHSCCCSSSCS---GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHC
T ss_pred ccHHHHHHHHHHhccCccCH---HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444443 4455554455 66778888888899999999999999987655 7777777776666553
Q ss_pred -----CChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHh
Q 013992 120 -----PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGV 194 (432)
Q Consensus 120 -----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~ 194 (432)
.+.+.+.+.-++.|++.+...+....++.|.+|+++|+++.++......+|..+++.+.+.+.+. ++.+.|.+
T Consensus 379 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~--~~~~~~~~ 456 (491)
T 4aps_A 379 GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK--SEVAYFSY 456 (491)
T ss_dssp CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS--STTHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHH
Confidence 27777888889999999998999999999999999999999999999999999999999988776 36677777
Q ss_pred hHHHHHHHHHHHh-hcCCC
Q 013992 195 AGIPALLQFILML-LLPES 212 (432)
Q Consensus 195 ~~~~~~~~~~~~~-~~~e~ 212 (432)
.+..+++..+..+ +.++.
T Consensus 457 ~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 457 FGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp THHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7776666665544 44443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.02 E-value=2.7e-11 Score=111.83 Aligned_cols=149 Identities=14% Similarity=0.046 Sum_probs=109.4
Q ss_pred cccceeccccchhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHH-HHHHHH--HH
Q 013992 41 LLFGYDTGVISGALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL-FFVGAV--IM 116 (432)
Q Consensus 41 ~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~--~~ 116 (432)
+.............|.+.++ +|.+..+. +++.+...++..++.++.+++.||+|+|. ..+... ...+.. ..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~ 283 (375)
T 2gfp_A 209 IGGLAGIAAFEACSGVLMGAVLGLSSMTV---SILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIP 283 (375)
T ss_dssp HHHHHHHHHHHHHCSCSSHHHHHHHHHHH---HHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 33333444455556665554 77777777 89999999999999999999999998832 233322 222221 22
Q ss_pred HH--hCChhHHHHHHhhhhccccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHh
Q 013992 117 AA--APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGV 194 (432)
Q Consensus 117 ~~--~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~~wr~~f~~ 194 (432)
.. .++.+.+.+..++.|++.+...+....++.|..| ++|+++.++.+....+|..+++.+.+.+.+..+ |+..+++
T Consensus 284 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-~~~~~~~ 361 (375)
T 2gfp_A 284 DWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ-GSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-HHHHHHH
T ss_pred hhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccHHHHH
Confidence 22 2366777788899999999999999999999998 789999999999999999999998888766443 7766665
Q ss_pred hH
Q 013992 195 AG 196 (432)
Q Consensus 195 ~~ 196 (432)
.+
T Consensus 362 ~~ 363 (375)
T 2gfp_A 362 TL 363 (375)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.90 E-value=2.7e-09 Score=103.11 Aligned_cols=137 Identities=12% Similarity=0.111 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh----ccccc----hHHHHHHHHHHHHHHHHHHHh---------CChhHHHHHHhhhhc
Q 013992 72 ESIVSMAVAGAIIGAAIGGWMN----DRFGR----RTSILVADFLFFVGAVIMAAA---------PNPGALITGRVFVGL 134 (432)
Q Consensus 72 ~~~~s~~~~~~~i~~~~~g~l~----dr~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G~ 134 (432)
+.+.....++..++.++.+++. ||.|+ ++.+..+.++.+++.++.++. .+.+.+++..++.|+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 417 (524)
T 2xut_A 338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF 417 (524)
T ss_dssp HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence 5566666666777777777764 55543 356677888888877776664 367778888899999
Q ss_pred cccchhhhHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC-ch---------HHHHHhhHHHHHHHHH
Q 013992 135 GVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-TW---------RWMLGVAGIPALLQFI 204 (432)
Q Consensus 135 ~~~~~~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~g~~i~~~i~~~l~~~~~-~w---------r~~f~~~~~~~~~~~~ 204 (432)
+.+...+....++.|..|+++|++++++.+....+|..+++.+.+.+.+..+ +| +..|++.+...++..+
T Consensus 418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (524)
T 2xut_A 418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAI 497 (524)
T ss_dssp HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887421 24 4446666666666655
Q ss_pred HHhh
Q 013992 205 LMLL 208 (432)
Q Consensus 205 ~~~~ 208 (432)
+.++
T Consensus 498 ~~~~ 501 (524)
T 2xut_A 498 VFAL 501 (524)
T ss_dssp HHC-
T ss_pred HHHH
Confidence 5443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=57.60 E-value=3.4 Score=19.47 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=11.2
Q ss_pred hhhhhhccccchHH
Q 013992 88 IGGWMNDRFGRRTS 101 (432)
Q Consensus 88 ~~g~l~dr~Grr~~ 101 (432)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46888999999864
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=26.31 E-value=69 Score=16.80 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=7.2
Q ss_pred HHHhhcCCCHH
Q 013992 204 ILMLLLPESPR 214 (432)
Q Consensus 204 ~~~~~~~e~~~ 214 (432)
....+++|+||
T Consensus 18 FFAI~FRePPr 28 (32)
T 3arc_T 18 FFAIFFREPPR 28 (32)
T ss_dssp HHHHHTSCCCC
T ss_pred HHhhhhcCCCC
Confidence 33566788875
Done!