BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013993
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 510 bits (1314), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/405 (60%), Positives = 300/405 (74%), Gaps = 12/405 (2%)
Query: 31 VRIGLRKKKLDQINRLVGQTVSKEEETMRT---PVRRYNLHGSLGDSDTDIVALNNFMDA 87
VRI L+K+ +D+ +R+ EE+ + + P+R + + DIVAL N+M+A
Sbjct: 1 VRIALKKRPIDRNSRVATGLSGGEEQPLLSGANPLRS--------EEEGDIVALKNYMNA 52
Query: 88 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSA 147
QYFGE+ +GTP Q FTVIFDTGSSNLWVPSAKCYFS+ +NG A
Sbjct: 53 QYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPA 112
Query: 148 AIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIG 207
AIQYGTG+I+G+FS+D+V VGDLVVK+Q+FIEATKE ITFL AKFDGILGLGF+EIS+G
Sbjct: 113 AIQYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVG 172
Query: 208 KAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGY 267
KA+PVWY M++QGLV +PVFSFWLNR DP HY GEHTYVPVT+KGY
Sbjct: 173 KAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGY 232
Query: 268 WQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTL 327
WQF+MGDVL+ G++TG+C+ GC AIADSGTSLLAGPT IIT+IN IGA+GV+SQECKT+
Sbjct: 233 WQFDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTI 292
Query: 328 VDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIEXXXXXXXXXXXXXXXXXAM 387
V QYG+ IL++L+AETQP+KICSQ+GLCTFDGTRG S GI M
Sbjct: 293 VSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIR-SVVDDEPVKSNGLRADPM 351
Query: 388 CSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVD 432
CSACEMAV+WMQN+L +N+T D IL+YVNQLC+RLPSP GESAVD
Sbjct: 352 CSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVD 396
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 285 bits (730), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 144/240 (60%), Positives = 167/240 (69%), Gaps = 4/240 (1%)
Query: 78 IVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXX 137
+VAL N D YFGE+ IGTP Q FTVIFDTGSS LWVPS+KC S
Sbjct: 4 VVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDS 63
Query: 138 XXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGIL 197
NGT AI YGTG+I+GFFSQD+V +GDLVVK QDFIEAT EA FL FDGIL
Sbjct: 64 STYKENGTFGAIIYGTGSITGFFSQDSVTIGDLVVKEQDFIEATDEADNVFLHRLFDGIL 123
Query: 198 GLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEH 257
GL FQ IS+ PVWYNML+QGLVKE FSFWLNR+ DP+H++G+H
Sbjct: 124 GLSFQTISV----PVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDH 179
Query: 258 TYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317
TYVPVT + YWQF +GDVLI ++TG+C+ GC A ADSGTSLL+GPT I+TQINHAIGA+
Sbjct: 180 TYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGAN 239
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 153/259 (59%), Gaps = 10/259 (3%)
Query: 61 PVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC 120
P++R +LG++ + ++ L N+MD QY+GE+ IGTP QTF V+FDTGSSN+WVPS+KC
Sbjct: 40 PMKRL----TLGNTTSSVI-LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKC 94
Query: 121 -YFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIE 179
NGT ++Y TG +SGF SQD + VG + V Q F E
Sbjct: 95 SRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGE 153
Query: 180 ATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXX 239
T+ ++ F+ A+FDG++G+GF E +IG+ P++ N++ QG++KE VFSF+ NRD
Sbjct: 154 VTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQ 213
Query: 240 XX--XXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGT 297
DP HY+G Y+ + K G WQ +M V + G +T C GC A+ D+G
Sbjct: 214 SLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGA 272
Query: 298 SLLAGPTTIITQINHAIGA 316
S ++G T+ I ++ A+GA
Sbjct: 273 SYISGSTSSIEKLMEALGA 291
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 195 bits (495), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 144/250 (57%), Gaps = 5/250 (2%)
Query: 81 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXX 140
L N++D +YFG +SIG+P Q FTVIFDTGSSNLWVPS C S
Sbjct: 17 LINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCT-SPACKTHSRFQPSQSSTY 75
Query: 141 XRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLG 200
+ G S +IQYGTG++SG D V V L V Q F E+ E TF+ A+FDGILGLG
Sbjct: 76 SQPGQSFSIQYGTGSLSGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLG 135
Query: 201 FQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYV 260
+ +++G PV+ NM+ Q LV P+FS +++ + D H+ G +V
Sbjct: 136 YPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWV 195
Query: 261 PVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS--- 317
PVTK+ YWQ + ++ + G T +CS GC AI D+GTSL+ GP+ I Q+ +AIGA+
Sbjct: 196 PVTKQAYWQIALDNIQVGG-TVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPVD 254
Query: 318 GVISQECKTL 327
G + EC L
Sbjct: 255 GEYAVECANL 264
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 194 bits (493), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 149/250 (59%), Gaps = 6/250 (2%)
Query: 70 SLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXX 128
+LG++ + ++ L N+MD QY+GE+ IGTP QTF V+FDTGSSN+WVPS+KC
Sbjct: 2 TLGNTTSSVI-LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVY 60
Query: 129 XXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITF 188
NGT ++Y TG +SGF SQD + VG + V Q F E T+ ++ F
Sbjct: 61 HKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPF 119
Query: 189 LAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXX--XXXXX 246
+ A+FDG++G+GF E +IG+ P++ N++ QG++KE VFSF+ NRD
Sbjct: 120 MLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLG 179
Query: 247 XXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTI 306
DP HY+G Y+ + K G WQ +M V + G +T C GC A+ D+G S ++G T+
Sbjct: 180 GSDPQHYEGNFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSS 238
Query: 307 ITQINHAIGA 316
I ++ A+GA
Sbjct: 239 IEKLMEALGA 248
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 194 bits (493), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 149/250 (59%), Gaps = 6/250 (2%)
Query: 70 SLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXX 128
+LG++ + ++ L N+MD QY+GE+ IGTP QTF V+FDTGSSN+WVPS+KC
Sbjct: 2 TLGNTTSSVI-LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVY 60
Query: 129 XXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITF 188
NGT ++Y TG +SGF SQD + VG + V Q F E T+ ++ F
Sbjct: 61 HKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPF 119
Query: 189 LAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXX--XXXXX 246
+ A+FDG++G+GF E +IG+ P++ N++ QG++KE VFSF+ NRD
Sbjct: 120 MLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLG 179
Query: 247 XXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTI 306
DP HY+G Y+ + K G WQ +M V + G +T C GC A+ D+G S ++G T+
Sbjct: 180 GSDPQHYEGNFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSS 238
Query: 307 ITQINHAIGA 316
I ++ A+GA
Sbjct: 239 IEKLMEALGA 248
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 194 bits (493), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 149/248 (60%), Gaps = 7/248 (2%)
Query: 70 SLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXX 128
+LG++ + ++ L N+MD QY+GE+ IGTP QTF V+FDTGSSN+WVPS+KC
Sbjct: 2 TLGNTTSSVI-LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVY 60
Query: 129 XXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITF 188
NGT ++Y TG +SGF SQD + VG + V Q F E T+ ++ F
Sbjct: 61 HKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPF 119
Query: 189 LAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXX 248
+ A+FDG++G+GF E +IG+ P++ N++ QG++KE VFSF+ NRD
Sbjct: 120 MLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRD---SLGGQIVLGGS 176
Query: 249 DPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIIT 308
DP HY+G Y+ + K G WQ +M V + G +T C GC A+ D+G S ++G T+ I
Sbjct: 177 DPQHYEGNFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIE 235
Query: 309 QINHAIGA 316
++ A+GA
Sbjct: 236 KLMEALGA 243
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 143/244 (58%), Gaps = 5/244 (2%)
Query: 76 TDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXX 134
T V L N+MD QY+GE+ IGTP QTF V+FDTGSSN+WVPS+KC
Sbjct: 3 TSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDA 62
Query: 135 XXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFD 194
NGT ++Y TG +SGF SQD + VG + V Q F E T+ ++ F+ A+FD
Sbjct: 63 SDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFMLAEFD 121
Query: 195 GILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXX--XXXXXXXDPDH 252
G++G+GF E +IG+ P++ N++ QG++KE VFSF+ NRD DP H
Sbjct: 122 GVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQH 181
Query: 253 YKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINH 312
Y+G Y+ + K G WQ +M V + G +T C GC A+ D+G S ++G T+ I ++
Sbjct: 182 YEGNFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLME 240
Query: 313 AIGA 316
A+GA
Sbjct: 241 ALGA 244
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 143/244 (58%), Gaps = 5/244 (2%)
Query: 76 TDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXX 134
T V L N+MD QY+GE+ IGTP QTF V+FDTGSSN+WVPS+KC
Sbjct: 4 TSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDA 63
Query: 135 XXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFD 194
NGT ++Y TG +SGF SQD + VG + V Q F E T+ ++ F+ A+FD
Sbjct: 64 SDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFMLAEFD 122
Query: 195 GILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXX--XXXXXXXDPDH 252
G++G+GF E +IG+ P++ N++ QG++KE VFSF+ NRD DP H
Sbjct: 123 GVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQH 182
Query: 253 YKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINH 312
Y+G Y+ + K G WQ +M V + G +T C GC A+ D+G S ++G T+ I ++
Sbjct: 183 YEGNFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLME 241
Query: 313 AIGA 316
A+GA
Sbjct: 242 ALGA 245
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 142/241 (58%), Gaps = 5/241 (2%)
Query: 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXX 137
V L N+MD QY+GE+ IGTP QTF V+FDTGSSN+WVPS+KC
Sbjct: 3 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDS 62
Query: 138 XXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGIL 197
NGT ++Y TG +SGF SQD + VG + V Q F E T+ ++ F+ A+FDG++
Sbjct: 63 SSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFMLAEFDGVV 121
Query: 198 GLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXX--XXXXXXXDPDHYKG 255
G+GF E +IG+ P++ N++ QG++KE VFSF+ NRD DP HY+G
Sbjct: 122 GMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEG 181
Query: 256 EHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIG 315
Y+ + K G WQ +M V + G +T C GC A+ D+G S ++G T+ I ++ A+G
Sbjct: 182 NFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALG 240
Query: 316 A 316
A
Sbjct: 241 A 241
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 136/239 (56%), Gaps = 4/239 (1%)
Query: 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXX 137
V L N++++QY+GE+ IGTP QTF VIFDTGS+NLWVPS KC +
Sbjct: 7 VVLTNYLNSQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGIHSLYESSDS 66
Query: 138 XXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGIL 197
NG I YG+G + GF SQD+V VG + V Q F E T+ I F+ A+FDG+L
Sbjct: 67 SSYMENGDDFTIHYGSGRVKGFLSQDSVTVGGITV-TQTFGEVTQLPLIPFMLAQFDGVL 125
Query: 198 GLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEH 257
G+GF ++G PV+ ++L QG++KE VFS + NR DP HY+G+
Sbjct: 126 GMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRG-PHLLGGEVVLGGSDPQHYQGDF 184
Query: 258 TYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGA 316
YV ++K WQ M V + G +T C GC + D+G+S ++ PT+ + I A+GA
Sbjct: 185 HYVSLSKTDSWQITMKGVSV-GSSTLLCEEGCEVVVDTGSSFISAPTSSLKLIMQALGA 242
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 142/253 (56%), Gaps = 8/253 (3%)
Query: 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXX 138
V L N+++AQY+ ++++GTP Q F VI DTGSSNLWVPS +C S+
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 139 XXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 198
NGT AIQYGTG++ G+ SQD + +GDL + QDF EAT E +TF KFDGILG
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 199 LGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWL-NRDXXXXXXXXXXXXXXDPDHYKGEH 257
LG+ IS+ K +P +YN + Q L+ E F+F+L + D +KG+
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 258 TYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGA- 316
T++PV +K YW+ + + + E S G A D+GTSL+ P+ + IN IGA
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHG--AAIDTGTSLITLPSGLAEMINAEIGAK 241
Query: 317 ---SGVISQECKT 326
+G + +C T
Sbjct: 242 KGSTGQYTLDCNT 254
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 150/291 (51%), Gaps = 12/291 (4%)
Query: 30 LVRIGL-RKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGS--LGDSDTDIVALNNFMD 86
LV++ L RKK L Q G+ + P +Y + +GD L N++D
Sbjct: 1 LVKVPLVRKKSLRQNLIKDGKLKDFLKTHKHNPASKYFPEAAALIGDE-----PLENYLD 55
Query: 87 AQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTS 146
+YFG + IGTP+Q FTVIFDTGSSNLWVPS C S+
Sbjct: 56 TEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTFEATSQE 114
Query: 147 AAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+I YGTG+++G D V+VG + NQ F + E A FDGILGL + IS
Sbjct: 115 LSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISA 174
Query: 207 GKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKG 266
A PV+ N+ DQGLV + +FS +L+ + D +Y G +VPV+ +G
Sbjct: 175 SGATPVFDNLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWVPVSVEG 232
Query: 267 YWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317
YWQ + + +DGET CS GC AI D+GTSLL GPT+ I I IGAS
Sbjct: 233 YWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 282
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 150/291 (51%), Gaps = 12/291 (4%)
Query: 30 LVRIGL-RKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGS--LGDSDTDIVALNNFMD 86
LV++ L RKK L Q G+ + P +Y + +GD L N++D
Sbjct: 1 LVKVPLVRKKSLRQNLIKDGKLKDFLKTHKHNPASKYFPEAAALIGDE-----PLENYLD 55
Query: 87 AQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTS 146
+YFG + IGTP+Q FTVIFDTGSSNLWVPS C S+
Sbjct: 56 TEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTFEATXQE 114
Query: 147 AAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+I YGTG+++G D V+VG + NQ F + E A FDGILGL + IS
Sbjct: 115 LSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISA 174
Query: 207 GKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKG 266
A PV+ N+ DQGLV + +FS +L+ + D +Y G +VPV+ +G
Sbjct: 175 SGATPVFDNLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWVPVSVEG 232
Query: 267 YWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317
YWQ + + +DGET CS GC AI D+GTSLL GPT+ I I IGAS
Sbjct: 233 YWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 282
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 142/253 (56%), Gaps = 8/253 (3%)
Query: 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXX 138
V L N+++AQY+ ++++GTP Q F VI DTGSSNLWVPS +C S+
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 139 XXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 198
NGT AIQYGTG++ G+ SQD + +GDL + QDF EAT E +TF KFDGILG
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 199 LGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWL-NRDXXXXXXXXXXXXXXDPDHYKGEH 257
LG+ IS+ K +P +YN + Q L+ E F+F+L + D +KG+
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 258 TYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGA- 316
T++PV +K YW+ + + + E S G A D+GTSL+ P+ + IN IGA
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHG--AAIDTGTSLITLPSGLAEMINAEIGAK 241
Query: 317 ---SGVISQECKT 326
+G + +C T
Sbjct: 242 KGWTGQYTLDCNT 254
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 142/253 (56%), Gaps = 8/253 (3%)
Query: 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXX 138
V L N+++AQY+ ++++GTP Q F VI DTGSSNLWVPS +C S+
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 139 XXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 198
NGT AIQYGTG++ G+ SQD + +GDL + QDF EAT E +TF KFDGILG
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 199 LGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWL-NRDXXXXXXXXXXXXXXDPDHYKGEH 257
LG+ IS+ K +P +YN + Q L+ E F+F+L + D +KG+
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 258 TYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGA- 316
T++PV +K YW+ + + + E S G A D+GTSL+ P+ + IN IGA
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHG--AAIDTGTSLITLPSGLAEMINAEIGAK 241
Query: 317 ---SGVISQECKT 326
+G + +C T
Sbjct: 242 KGWTGQYTLDCNT 254
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 130/237 (54%), Gaps = 4/237 (1%)
Query: 81 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXX 140
L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS C S+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 141 XRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLG 200
+I YGTG+++G D V+VG + NQ F + E A FDGILGL
Sbjct: 65 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 201 FQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYV 260
+ IS A PV+ N+ DQGLV + +FS +L+ + D +Y G +V
Sbjct: 125 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWV 182
Query: 261 PVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317
PV+ +GYWQ + + +DGET CS GC AI D+GTSLL GPT+ I I IGAS
Sbjct: 183 PVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 130/237 (54%), Gaps = 4/237 (1%)
Query: 81 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXX 140
L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS C S+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 141 XRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLG 200
+I YGTG+++G D V+VG + NQ F + E A FDGILGL
Sbjct: 65 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 201 FQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYV 260
+ IS A PV+ N+ DQGLV + +FS +L+ + D +Y G +V
Sbjct: 125 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWV 182
Query: 261 PVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317
PV+ +GYWQ + + +DGET CS GC AI D+GTSLL GPT+ I I IGAS
Sbjct: 183 PVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 130/237 (54%), Gaps = 4/237 (1%)
Query: 81 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXX 140
L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS C S+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 141 XRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLG 200
+I YGTG+++G D V+VG + NQ F + E A FDGILGL
Sbjct: 65 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 201 FQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYV 260
+ IS A PV+ N+ DQGLV + +FS +L+ + D +Y G +V
Sbjct: 125 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWV 182
Query: 261 PVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317
PV+ +GYWQ + + +DGET CS GC AI D+GTSLL GPT+ I I IGAS
Sbjct: 183 PVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 130/237 (54%), Gaps = 4/237 (1%)
Query: 81 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXX 140
L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS C S+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 141 XRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLG 200
+I YGTG+++G D V+VG + NQ F + E A FDGILGL
Sbjct: 65 EATXQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 201 FQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYV 260
+ IS A PV+ N+ DQGLV + +FS +L+ + D +Y G +V
Sbjct: 125 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWV 182
Query: 261 PVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317
PV+ +GYWQ + + +DGET CS GC AI D+GTSLL GPT+ I I IGAS
Sbjct: 183 PVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 130/237 (54%), Gaps = 4/237 (1%)
Query: 81 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXX 140
L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS C S+
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTF 64
Query: 141 XRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLG 200
+I YGTG+++G D V+VG + NQ F + E A FDGILGL
Sbjct: 65 EATXQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 201 FQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYV 260
+ IS A PV+ N+ DQGLV + +FS +L+ + D +Y G +V
Sbjct: 125 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSN--DDSGSVVLLGGIDSSYYTGSLNWV 182
Query: 261 PVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317
PV+ +GYWQ + + +DGET CS GC AI D+GTSLL GPT+ I I IGAS
Sbjct: 183 PVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS 238
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 140/253 (55%), Gaps = 12/253 (4%)
Query: 84 FMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRN 143
+MDA YFGE+SIGTP Q F V+FDTGSSNLWVPS C S N
Sbjct: 9 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTSHSRFNPSESSTYSTN 67
Query: 144 GTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQE 203
G + ++QYG+G+++GFF D + V + V NQ+F + E F+ A+FDGI+GL +
Sbjct: 68 GQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPA 127
Query: 204 ISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVT 263
+S+ +A M+ +G + PVFS +L+ + D Y G+ + PVT
Sbjct: 128 LSVDEATTAMQGMVQEGALTSPVFSVYLS-NQQGSSGGAVVFGGVDSSLYTGQIYWAPVT 186
Query: 264 KKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQE 323
++ YWQ + + LI G+ +G+CS GC AI D+GTSLL P ++ + A GA QE
Sbjct: 187 QELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGA-----QE 241
Query: 324 CKTLVDQYGKTIL 336
D+YG+ ++
Sbjct: 242 -----DEYGQFLV 249
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 171 bits (434), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 130/237 (54%), Gaps = 4/237 (1%)
Query: 81 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXX 140
L N++D +YFG + IGTP+Q FTV+FDTGSSNLWVPS C S+
Sbjct: 6 LENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCS-SLACTNHNRFNPEDSSTY 64
Query: 141 XRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLG 200
+ +I YGTG+++G D V+VG + NQ F + E A FDGILGL
Sbjct: 65 QSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 201 FQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYV 260
+ IS A PV+ N+ +QGLV + +FS +L+ D D +Y G +V
Sbjct: 125 YPSISSSGATPVFDNIWNQGLVSQDLFSVYLSAD--DQSGSVVIFGGIDSSYYTGSLNWV 182
Query: 261 PVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317
PVT +GYWQ + + ++GE C+ GC AI D+GTSLL GPT+ I I IGAS
Sbjct: 183 PVTVEGYWQITVDSITMNGEAIA-CAEGCQAIVDTGTSLLTGPTSPIANIQSDIGAS 238
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 171 bits (434), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 130/237 (54%), Gaps = 4/237 (1%)
Query: 81 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXX 140
L N++D +YFG + IGTP+Q FTV+FDTGSSNLWVPS C S+
Sbjct: 6 LENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCS-SLACTNHNRFNPEDSSTY 64
Query: 141 XRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLG 200
+ +I YGTG+++G D V+VG + NQ F + E A FDGILGL
Sbjct: 65 QSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 124
Query: 201 FQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYV 260
+ IS A PV+ N+ +QGLV + +FS +L+ D D +Y G +V
Sbjct: 125 YPSISSSGATPVFDNIWNQGLVSQDLFSVYLSAD--DQSGSVVIFGGIDSSYYTGSLNWV 182
Query: 261 PVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317
PVT +GYWQ + + ++GE C+ GC AI D+GTSLL GPT+ I I IGAS
Sbjct: 183 PVTVEGYWQITVDSITMNGEAIA-CAEGCQAIVDTGTSLLTGPTSPIANIQSDIGAS 238
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 138/238 (57%), Gaps = 7/238 (2%)
Query: 81 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXX 140
L +++D+QYFG++ IGTP Q FTV+FDTGSS+LWVPS C +V
Sbjct: 5 LTSYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTF- 63
Query: 141 XRN-GTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGL 199
RN G +I YGTG++ GF D V V ++V NQ +T++ F ++FDGILGL
Sbjct: 64 -RNLGKPLSIHYGTGSMEGFLGYDTVTVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGL 122
Query: 200 GFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTY 259
+ ++ ++PV+ NM+D+ LV +FS +++R+ DP +Y G +
Sbjct: 123 AYPSLASEYSVPVFDNMMDRHLVARDLFSVYMDRN---GQGSMLTLGAIDPSYYTGSLHW 179
Query: 260 VPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317
VPVT + YWQF + V I+G C GC AI D+GTS+L GP++ I +I AIGA+
Sbjct: 180 VPVTLQQYWQFTVDSVTINGVAVA-CVGGCQAILDTGTSVLFGPSSDILKIQMAIGAT 236
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 164 bits (416), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 131/239 (54%), Gaps = 5/239 (2%)
Query: 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXX 138
V L N++D+QYFG++ +GTP Q FTV+FDTGSS+ WVPS C S
Sbjct: 6 VPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFDPRKSS 64
Query: 139 XXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 198
G +I YGTG++ G D V V ++V Q +T+E F A+FDGILG
Sbjct: 65 TFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILG 124
Query: 199 LGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHT 258
+ + ++ +IPV+ NM+++ LV + +FS +++R+ DP +Y G
Sbjct: 125 MAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRN---GQESMLTLGAIDPSYYTGSLH 181
Query: 259 YVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317
+VPVT + YWQF + V I G C GC AI D+GTS L GP++ I I AIGA+
Sbjct: 182 WVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQAIGAT 239
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 131/239 (54%), Gaps = 5/239 (2%)
Query: 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXX 138
V L N++D+QYFG++ +GTP Q FTV+FDTGSS+ WVPS C S
Sbjct: 6 VPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFDPRKSS 64
Query: 139 XXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 198
G +I YGTG++ G D V V ++V Q +T+E F A+FDGILG
Sbjct: 65 TFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILG 124
Query: 199 LGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHT 258
+ + ++ +IPV+ NM+++ LV + +FS +++R+ DP +Y G
Sbjct: 125 MAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRN---GQESMLTLGAIDPSYYTGSLH 181
Query: 259 YVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317
+VPVT + YWQF + V I G C GC AI D+GTS L GP++ I I AIGA+
Sbjct: 182 WVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQAIGAT 239
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 108/166 (65%), Gaps = 3/166 (1%)
Query: 70 SLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXX 128
+LG++ + ++ L N+MD QY+GE+ IGTP QTF V+FDTGSSN+WVPS+KC
Sbjct: 2 TLGNTTSSVI-LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVY 60
Query: 129 XXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITF 188
NGT ++Y TG +SGF SQD + VG + V Q F E T+ ++ F
Sbjct: 61 HKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPF 119
Query: 189 LAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRD 234
+ A+FDG++G+GF E +IG+ P++ N++ QG++KE VFSF+ NRD
Sbjct: 120 MLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRD 165
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 121/237 (51%), Gaps = 5/237 (2%)
Query: 81 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXX 140
+ N D +Y+G +SIGTP ++F VIFDTGSSNLWV S+ C +
Sbjct: 6 MKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCS-AQACSNHNKFKPRQSSTY 64
Query: 141 XRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLG 200
G + + YGTG + G QD V VG NQ+ E+ E AA FDGILGL
Sbjct: 65 VETGKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLA 124
Query: 201 FQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYV 260
+ I+ A+PV+ NM Q LV++ +FSF+L+ D HY G ++
Sbjct: 125 YPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLS--GGGANGSEVMLGGVDNSHYTGSIHWI 182
Query: 261 PVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317
PVT + YWQ + + ++G+T GC AI D+GTS + P + + I IGAS
Sbjct: 183 PVTAEKYWQVALDGITVNGQTA--ACEGCQAIVDTGTSKIVAPVSALANIMKDIGAS 237
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 168 GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVF 227
G + V+ Q F EATK+ ITF+AAKFDGILG+ + IS+ +PV+ N++ Q LV + +F
Sbjct: 1 GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIF 60
Query: 228 SFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCST 287
SF+L+RD D +YKG +Y+ VT+K YWQ + V + T C
Sbjct: 61 SFYLSRDPDAQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLT-LCKE 119
Query: 288 GCNAIADSGTSLLAGPTTIITQINHAIGASGVISQE 323
GC AI D+GTSL+ GP + ++ AIGA +I E
Sbjct: 120 GCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGE 155
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 119/239 (49%), Gaps = 11/239 (4%)
Query: 74 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXX 133
S+ D + L++ + ++GE IGT Q F IFDTGS+NLWVPS C S+
Sbjct: 1 SENDSIELDDVANLMFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCD-SIGCSTKHLYD 59
Query: 134 XXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASI--TFLAA 191
++GT I YG+G + G+FS+D + +GDL + + FIE T + + +
Sbjct: 60 ASASKSYEKDGTKVEISYGSGTVRGYFSKDVISLGDLSLPYK-FIEVTDADDLEPIYSGS 118
Query: 192 KFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPD 251
+FDGILGLG++++SIG PV + Q + +F+F+L + D
Sbjct: 119 EFDGILGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYLP--VHDKHVGYLTIGGIESD 176
Query: 252 HYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310
Y+G TY + YWQ ++ D Y NA+ DSGTS + PT+ + +
Sbjct: 177 FYEGPLTYEKLNHDLYWQIDL-----DIHFGKYVMQKANAVVDSGTSTITAPTSFLNKF 230
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 126/239 (52%), Gaps = 11/239 (4%)
Query: 74 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXX 133
S+ D++ L++ + ++GE +G Q F +IFDTGS+NLWVPS KC S+
Sbjct: 1 SENDVIELDDVANLMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN-SIGCSTKHLYD 59
Query: 134 XXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASIT--FLAA 191
++GT I YG+G + GFFS+D V +G L + + FIE T + + AA
Sbjct: 60 SSKSKSYEKDGTKVEITYGSGTVRGFFSKDLVTLGYLSLPYK-FIEVTDTDDLEPLYTAA 118
Query: 192 KFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPD 251
+FDGILGLG++++SIG P+ + +Q + + +F+F+L +
Sbjct: 119 EFDGILGLGWKDLSIGSIDPIVVELKNQNKIDQALFTFYL--PVHDKHSGYLTIGGIEEK 176
Query: 252 HYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310
Y+GE TY + +WQ ++ DV G+T+ N I DSGTS + PT+ I +
Sbjct: 177 FYEGELTYEKLNHDLFWQVDL-DVNF-GKTS---MEKANVIVDSGTSTITAPTSFINKF 230
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 124/248 (50%), Gaps = 23/248 (9%)
Query: 69 GSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXX 128
G+ GDS V LN+ + Y+GE IG Q F IFDTGS+NLWVPSA+C ++
Sbjct: 7 GNAGDS----VTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCN-TIGCKT 61
Query: 129 XXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASI-- 186
++GT + Y +G +SGFFS+D V + +L + FIE T
Sbjct: 62 KNLYDSNKSKTYEKDGTKVEMNYVSGTVSGFFSKDIVTIANLSFPYK-FIEVTDTNGFEP 120
Query: 187 TFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXX 246
+ +FDGI+GLG++++SIG PV + +Q +++ VF+F+L D
Sbjct: 121 AYTLGQFDGIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYLPFD--DKHKGYLTIG 178
Query: 247 XXDPDHYKGEHTYVPVTKKGYWQFEM----GDVLIDGETTGYCSTGCNAIADSGTSLLAG 302
+ Y+G+ TY + YWQ ++ G++ ++ T AI DSGTS +
Sbjct: 179 GIEDRFYEGQLTYEKLNHDLYWQVDLDLHFGNLTVEKAT---------AIVDSGTSSITA 229
Query: 303 PTTIITQI 310
PT + +
Sbjct: 230 PTEFLNKF 237
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 136/280 (48%), Gaps = 18/280 (6%)
Query: 39 KLDQINRLVGQTVSKE------EETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGE 92
K+++ V +T+SK+ +ET Y LG S+ D++ L++ + ++GE
Sbjct: 9 KIERPYDKVLKTISKKNLKNYIKETFNFFKSGYMKQNYLG-SENDVIELDDVANIMFYGE 67
Query: 93 VSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYG 152
+G Q F +IFDTGS+NLWVPS KC S ++GT I YG
Sbjct: 68 GEVGDNHQKFMLIFDTGSANLWVPSKKCN-SSGCSIKNLYDSSKSKSYEKDGTKVDITYG 126
Query: 153 TGAISGFFSQDNVKVGDLVVKNQDFIEATKEASI--TFLAAKFDGILGLGFQEISIGKAI 210
+G + GFFS+D V +G L + + FIE T + + + +FDGILGLG++++SIG
Sbjct: 127 SGTVKGFFSKDLVTLGHLSMPYK-FIEVTDTDDLEPIYSSVEFDGILGLGWKDLSIGSID 185
Query: 211 PVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQF 270
P+ + +Q + +F+F+L + Y+G TY + YWQ
Sbjct: 186 PIVVELKNQNKIDNALFTFYL--PVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQI 243
Query: 271 EMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310
++ DV +T N I DSGT+ + P+ + +
Sbjct: 244 DL-DVHFGKQTM----EKANVIVDSGTTTITAPSEFLNKF 278
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 11/239 (4%)
Query: 74 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXX 133
S D + L +F + ++G+ +G Q FT I DTGS+NLWVPS KC +
Sbjct: 125 SSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYD 183
Query: 134 XXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEA--TKEASITFLAA 191
++GT + Y +G +SGFFS+D V VG+L + + FIE T T+ A+
Sbjct: 184 SSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTAS 242
Query: 192 KFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPD 251
FDGILGLG++++SIG P+ + +Q ++ +F+F+L +
Sbjct: 243 TFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIGGIEER 300
Query: 252 HYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310
Y+G TY + YWQ + +D N I DSGTS + PT + ++
Sbjct: 301 FYEGPLTYEKLNHDLYWQ-----ITLDAHVGNIMLEKANCIVDSGTSAITVPTDFLNKM 354
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 117 bits (294), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 11/239 (4%)
Query: 74 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXX 133
S D + L +F + ++G+ +G Q FT I DTGS+NLWVPS KC +
Sbjct: 52 SSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYD 110
Query: 134 XXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEA--TKEASITFLAA 191
++GT + Y +G +SGFFS+D V VG+L + + FIE T T+ A+
Sbjct: 111 SSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTAS 169
Query: 192 KFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPD 251
FDGILGLG++++SIG P+ + +Q ++ +F+F+L +
Sbjct: 170 TFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIGGIEER 227
Query: 252 HYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310
Y+G TY + YWQ + +D N I DSGTS + PT + ++
Sbjct: 228 FYEGPLTYEKLNHDLYWQ-----ITLDAHVGNIMLEKANCIVDSGTSAITVPTDFLNKM 281
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 11/239 (4%)
Query: 74 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXX 133
S D + L +F + ++G+ +G Q FT I DTGS+NLWVPS KC +
Sbjct: 3 SSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYD 61
Query: 134 XXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEA--TKEASITFLAA 191
++GT + Y +G +SGFFS+D V VG+L + + FIE T T+ A+
Sbjct: 62 SSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTAS 120
Query: 192 KFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPD 251
FDGILGLG++++SIG P+ + +Q ++ +F+F+L +
Sbjct: 121 TFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIGGIEER 178
Query: 252 HYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310
Y+G TY + YWQ + +D N I DSGTS + PT + ++
Sbjct: 179 FYEGPLTYEKLNHDLYWQ-----ITLDAHVGNISLEKANCIVDSGTSAITVPTDFLNKM 232
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 11/239 (4%)
Query: 74 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXX 133
S D + L +F + ++G+ +G Q FT I DTGS+NLWVPS KC +
Sbjct: 1 SSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYD 59
Query: 134 XXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEA--TKEASITFLAA 191
++GT + Y +G +SGFFS+D V VG+L + + FIE T T+ A+
Sbjct: 60 SSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTAS 118
Query: 192 KFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPD 251
FDGILGLG++++SIG P+ + +Q ++ +F+F+L +
Sbjct: 119 TFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIGGIEER 176
Query: 252 HYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310
Y+G TY + YWQ + +D N I DSGTS + PT + ++
Sbjct: 177 FYEGPLTYEKLNHDLYWQ-----ITLDAHVGNISLEKANCIVDSGTSAITVPTDFLNKM 230
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 11/239 (4%)
Query: 74 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXX 133
S D + L +F + ++G+ +G Q FT I DTGS+NLWVPS KC +
Sbjct: 1 SSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYD 59
Query: 134 XXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEA--TKEASITFLAA 191
++GT + Y +G +SGFFS+D V VG+L + + FIE T T+ A+
Sbjct: 60 SSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTAS 118
Query: 192 KFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPD 251
FDGILGLG++++SIG P+ + +Q ++ +F+F+L +
Sbjct: 119 TFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIGGIEER 176
Query: 252 HYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310
Y+G TY + YWQ + +D N I DSGTS + PT + ++
Sbjct: 177 FYEGPLTYEKLNHDLYWQ-----ITLDAHVGNIMLEKANCIVDSGTSAITVPTDFLNKM 230
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 11/239 (4%)
Query: 74 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXX 133
S D + L +F + ++G+ +G Q FT I DTGS+NLWVPS KC +
Sbjct: 3 SSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYD 61
Query: 134 XXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEA--TKEASITFLAA 191
++GT + Y +G +SGFFS+D V VG+L + + FIE T T+ A+
Sbjct: 62 SSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTAS 120
Query: 192 KFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPD 251
FDGILGLG++++SIG P+ + +Q ++ +F+F+L +
Sbjct: 121 TFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIGGIEER 178
Query: 252 HYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310
Y+G TY + YWQ + +D N I DSGTS + PT + ++
Sbjct: 179 FYEGPLTYEKLNHDLYWQ-----ITLDAHVGNIMLEKANCIVDSGTSAITVPTDFLNKM 232
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 119/238 (50%), Gaps = 11/238 (4%)
Query: 74 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXX 133
S+ D++ L++ + ++GE +G Q F +IFDTGS+NLWVPS KC S
Sbjct: 3 SENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN-SSGCSIKNLYD 61
Query: 134 XXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEA--TKEASITFLAA 191
++GT I YG+G + GFFS+D V +G L + + FIE T + + +
Sbjct: 62 SSKSKSYEKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMPYK-FIEVIDTDDLEPIYSSV 120
Query: 192 KFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPD 251
+FDGILGLG++++SIG P+ + +Q + +F+F+L +
Sbjct: 121 EFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYL--PVHDVHAGYLTIGGIEEK 178
Query: 252 HYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQ 309
Y+G TY + YWQ ++ DV +T N I DSGT+ + P+ + +
Sbjct: 179 FYEGNITYEKLNHDLYWQIDL-DVHFGKQTM----EKANVIVDSGTTTITAPSEFLNK 231
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 111 bits (277), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 121/250 (48%), Gaps = 18/250 (7%)
Query: 86 DAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGT 145
D +Y+G+V+IGTP + F + FDTGSS+LW+ S C + +G
Sbjct: 14 DIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLC--TNCGSRQTKYDPNQSSTYQADGR 71
Query: 146 SAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEI 204
+ +I YG G + SG ++DNV +G L++K Q IE K + +F + DG+LGLGF I
Sbjct: 72 TWSISYGDGSSASGILAKDNVNLGGLLIKGQT-IELAKREAASFASGPNDGLLGLGFDTI 130
Query: 205 SIGKAIPVWY-NMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPV- 262
+ + + N++ QGL+ P+F +L + D +KG T VP+
Sbjct: 131 TTVRGVKTPMDNLISQGLISRPIFGVYLGK-AKNGGGGEYIFGGYDSTKFKGSLTTVPID 189
Query: 263 TKKGYWQFEMGDVLIDGETTGYCSTGC--NAIADSGTSLLAGPTTIITQINHAIGAS--- 317
+G+W + +D T G + + I D+GT+LL P I + A GAS
Sbjct: 190 NSRGWWG-----ITVDRATVGTSTVASSFDGILDTGTTLLILPNNIAASVARAYGASDNG 244
Query: 318 -GVISQECKT 326
G + C T
Sbjct: 245 DGTYTISCDT 254
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 121/250 (48%), Gaps = 18/250 (7%)
Query: 86 DAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGT 145
D +Y+G+V+IGTP + F + FDTGSS+LW+ S C + +G
Sbjct: 14 DIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLC--TNCGSGQTKYDPNQSSTYQADGR 71
Query: 146 SAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEI 204
+ +I YG G + SG ++DNV +G L++K Q IE K + +F + DG+LGLGF I
Sbjct: 72 TWSISYGDGSSASGILAKDNVNLGGLLIKGQT-IELAKREAASFASGPNDGLLGLGFDTI 130
Query: 205 SIGKAIPVWY-NMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPV- 262
+ + + N++ QGL+ P+F +L + D +KG T VP+
Sbjct: 131 TTVRGVKTPMDNLISQGLISRPIFGVYLGK-AKNGGGGEYIFGGYDSTKFKGSLTTVPID 189
Query: 263 TKKGYWQFEMGDVLIDGETTGYCSTGC--NAIADSGTSLLAGPTTIITQINHAIGAS--- 317
+G+W + +D T G + + I D+GT+LL P I + A GAS
Sbjct: 190 NSRGWWG-----ITVDRATVGTSTVASSFDGILDTGTTLLILPNNIAASVARAYGASDNG 244
Query: 318 -GVISQECKT 326
G + C T
Sbjct: 245 DGTYTISCDT 254
>pdb|3RFI|A Chain A, Crystal Structure Of The Saposin-Like Domain Of Plant
Aspartic Protease From Solanum Tuberosum
Length = 108
Score = 103 bits (256), Expect = 3e-22, Method: Composition-based stats.
Identities = 44/108 (40%), Positives = 69/108 (63%), Gaps = 2/108 (1%)
Query: 316 ASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIEXXXXXXX 375
A ++S ECKT+V QYG+ I ++L++ +P ++CSQ GLC DG + S I+
Sbjct: 3 AMAIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHVSSNIKTVVERET 62
Query: 376 XXXXXXXXXXAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLP 423
+C+ACEMAV+WMQN+L++ T +++L YVNQLC+++P
Sbjct: 63 EGSSVGEA--PLCTACEMAVVWMQNQLKQEGTKEKVLEYVNQLCEKIP 108
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 95.5 bits (236), Expect = 5e-20, Method: Composition-based stats.
Identities = 45/88 (51%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 81 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXX 139
L N+MDAQY+GE+ IGTP Q FTV+FDTGSSNLWVPS C +
Sbjct: 7 LKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSST 66
Query: 140 XXRNGTSAAIQYGTGAISGFFSQDNVKV 167
+NGTS I YG+G++SG+ SQD V V
Sbjct: 67 YVKNGTSFDIHYGSGSLSGYLSQDTVSV 94
>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNS|B Chain B, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNT|A Chain A, Crystal Structure Of Pepstatin A Bound Histo-aspartic
Protease (hap) From Plasmodium Falciparum
pdb|3FNU|A Chain A, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|B Chain B, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|C Chain C, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|D Chain D, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 332
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 100/239 (41%), Gaps = 11/239 (4%)
Query: 74 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXX 133
S+ D V L + + FGE +G Q F +F T SSN+WVPS KC S
Sbjct: 5 SEFDNVELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCT-SESCESKNHYD 63
Query: 134 XXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASIT--FLAA 191
++ T + G ISG FS+D V +G L V + FIE T+ + +
Sbjct: 64 SSKSKTYEKDDTPVKLTSKAGTISGIFSKDLVTIGKLSVPYK-FIEMTEIVGFEPFYSES 122
Query: 192 KFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPD 251
DG+ GLG++++SIG P + Q +++ V+S +L + +
Sbjct: 123 DVDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPE--NKNKGYLTIGGIEER 180
Query: 252 HYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310
+ G Y + WQ ++ D S N I DS TS++ PT Q
Sbjct: 181 FFDGPLNYEKLNHDLMWQVDL-----DVHFGNVSSKKANVILDSATSVITVPTEFFNQF 234
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 100/239 (41%), Gaps = 11/239 (4%)
Query: 74 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXX 133
S+ D V L + + FGE +G Q F +F T SSN+WVPS KC S
Sbjct: 124 SEFDNVELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCT-SESCESKNHYD 182
Query: 134 XXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASIT--FLAA 191
++ T + G ISG FS+D V +G L V + FIE T+ + +
Sbjct: 183 SSKSKTYEKDDTPVKLTSKAGTISGIFSKDLVTIGKLSVPYK-FIEMTEIVGFEPFYSES 241
Query: 192 KFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPD 251
DG+ GLG++++SIG P + Q +++ V+S +L + +
Sbjct: 242 DVDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPE--NKNKGYLTIGGIEER 299
Query: 252 HYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310
+ G Y + WQ V +D S N I DS TS++ PT Q
Sbjct: 300 FFDGPLNYEKLNHDLMWQ-----VDLDVHFGNVSSKKANVILDSATSVITVPTEFFNQF 353
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 107/272 (39%), Gaps = 20/272 (7%)
Query: 72 GDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXX 131
GD D L +F +Y VSIGTP Q F ++FDTGSS+ WVP C S
Sbjct: 3 GDGSVDTPGLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRF 62
Query: 132 XXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAA 191
+ I YGTG +G + +D++ VG VK Q + T +
Sbjct: 63 FDPSSSSTFKETDYNLNITYGTGGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQS 122
Query: 192 K-----FDGILGLGFQEISIGKAI------PVWYNMLDQGLVKEPVFSFWLNRDXXXXXX 240
DGI G + + + +A V N+ QGL+ PVFS ++N +
Sbjct: 123 PDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDGGGQV 182
Query: 241 XXXXXXXXDPDHYKGEHTYVPVTKK--GY--WQFEMGDVLIDGETTGYCSTGCNAIA-DS 295
G+ Y V K GY W + V IDG + G A D+
Sbjct: 183 VFGGVNNT---LLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDG-SDAVSFDGAQAFTIDT 238
Query: 296 GTSLLAGPTTIITQINHAIGASGVISQECKTL 327
GT+ P++ ++ A SQ+ T+
Sbjct: 239 GTNFFIAPSSFAEKVVKAALPDATESQQGYTV 270
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 73/173 (42%), Gaps = 11/173 (6%)
Query: 73 DSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXX 132
D D +F +Y VSIGTP Q F ++FDTGSS+ WVP C S
Sbjct: 4 DGSVDTPGYYDFDLEEYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSRFF 63
Query: 133 XXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQ-----DFIEATKEASIT 187
+ I YGTG +G + +D++ +GD+ V Q D +
Sbjct: 64 DPSASSTFKATNYNLNITYGTGGANGLYFEDSIAIGDITVTKQILAYVDNVRGPTAEQSP 123
Query: 188 FLAAKFDGILGLGFQEISIGKA------IPVWYNMLDQGLVKEPVFSFWLNRD 234
DG+ G + + + +A V N+ QGL+ P+FS ++N +
Sbjct: 124 NADIFLDGLFGAAYPDNTAMEAEYGSTYNTVHVNLYKQGLISSPLFSVYMNTN 176
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 107/243 (44%), Gaps = 16/243 (6%)
Query: 85 MDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNG 144
+D Y V IGTP+QT + FDTGSS+LWV S++ S
Sbjct: 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIYTPSKSTTAKLLSGA 72
Query: 145 TSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLA-AKFDGILGLGFQE 203
T + + SG D V VG L V Q +E+ K+ S +F + DG+LGL F
Sbjct: 73 TWSISYGDGSSSSGDVYTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLAFST 131
Query: 204 ISIGKAI--PVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVP 261
++ +++ L PVF+ D D Y G TY
Sbjct: 132 LNTVSPTQQKTFFDNAKASL-DSPVFT----ADLGYHAPGTYNFGFIDTTAYTGSITYTA 186
Query: 262 V-TKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIIT----QINHAIGA 316
V TK+G+W++ + T + ST + IAD+GT+LL P T+++ Q++ A +
Sbjct: 187 VSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSS 244
Query: 317 SGV 319
S V
Sbjct: 245 SSV 247
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 107/243 (44%), Gaps = 16/243 (6%)
Query: 85 MDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNG 144
+D Y V IGTP+QT + FDTGSS+LWV S++ S
Sbjct: 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIYTPSKSTTAKLLSGA 72
Query: 145 TSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLA-AKFDGILGLGFQE 203
T + + SG D V VG L V Q +E+ K+ S +F + DG+LGL F
Sbjct: 73 TWSISYGDGSSSSGDVYTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLAFST 131
Query: 204 ISIGKAI--PVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVP 261
++ +++ L PVF+ D D Y G TY
Sbjct: 132 LNTVSPTQQKTFFDNAKASL-DSPVFT----ADLGYHAPGTYNFGFIDTTAYTGSITYTA 186
Query: 262 V-TKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIIT----QINHAIGA 316
V TK+G+W++ + T + ST + IAD+GT+LL P T+++ Q++ A +
Sbjct: 187 VSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSS 244
Query: 317 SGV 319
S V
Sbjct: 245 SSV 247
>pdb|3LIZ|A Chain A, Crystal Structure Of Bla G 2 Complexed With Fab 4c3
Length = 334
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 96/236 (40%), Gaps = 11/236 (4%)
Query: 84 FMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRN 143
F++ QY G IG +Q F +FD+ S N+ V S +C +
Sbjct: 16 FINTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISD 73
Query: 144 GTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFI---EATKEASITFLAAKFDGILGLG 200
G + TG+ G +D++ + L QD + E ++E I A GI G
Sbjct: 74 GNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLADELSQEVCI-LSADVVVGIAAPG 132
Query: 201 FQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYV 260
GK V N +++ L+ PVFS R D + GE TYV
Sbjct: 133 CPNALKGKT--VLENFVEENLIA-PVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYV 189
Query: 261 PVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGA 316
P+ W+F + V I G+TT G AI D+ +++ GP + IN AIG
Sbjct: 190 PLVGDDSWKFRLDGVKI-GDTT-VAPAGTQAIIDTSKAIIVGPKAYVNPINEAIGC 243
>pdb|1YG9|A Chain A, The Structure Of Mutant (N93q) Of Bla G 2
pdb|2NR6|A Chain A, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
pdb|2NR6|B Chain B, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
Length = 330
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 96/235 (40%), Gaps = 11/235 (4%)
Query: 84 FMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRN 143
F++ QY G IG +Q F +FD+ S N+ V S +C +
Sbjct: 14 FINTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISD 71
Query: 144 GTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFI---EATKEASITFLAAKFDGILGLG 200
G + TG+ G +D++ + L QD + E ++E I A GI G
Sbjct: 72 GNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLADELSQEVCI-LSADVVVGIAAPG 130
Query: 201 FQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYV 260
GK V N +++ L+ PVFS R D + GE TYV
Sbjct: 131 CPNALKGKT--VLENFVEENLIA-PVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYV 187
Query: 261 PVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIG 315
P+ W+F + V I G+TT G AI D+ +++ GP + IN AIG
Sbjct: 188 PLVGDDSWKFRLDGVKI-GDTT-VAPAGTQAIIDTSKAIIVGPKAYVNPINEAIG 240
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 106/245 (43%), Gaps = 19/245 (7%)
Query: 85 MDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFS-VXXXXXXXXXXXXXXXXXRN 143
+D Y V IGTP+QT + FDTGSS+LWV S++ S V
Sbjct: 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAKLLSG 72
Query: 144 GTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLA-AKFDGILGLGFQ 202
T + + SG D V VG L V Q +E+ K+ S +F + DG+LGL F
Sbjct: 73 ATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLAFS 131
Query: 203 EISIGKAIPVWYNML---DQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTY 259
++ P + + PVF+ D D Y G TY
Sbjct: 132 TLN--TVSPTQXKTFFDNAKASLDSPVFT----ADLGYHAPGTYNFGFIDTTAYTGSITY 185
Query: 260 VPV-TKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIIT----QINHAI 314
V TK+G+W++ + T + ST + IAD+GT+LL P T+++ Q++ A
Sbjct: 186 TAVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAK 243
Query: 315 GASGV 319
+S V
Sbjct: 244 SSSSV 248
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 107/244 (43%), Gaps = 17/244 (6%)
Query: 85 MDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFS-VXXXXXXXXXXXXXXXXXRN 143
+D Y V IGTP+QT + FDTGSS+LWV S++ S V
Sbjct: 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAKLLSG 72
Query: 144 GTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLA-AKFDGILGLGFQ 202
T + + SG D V VG L V Q +E+ K+ S +F + DG+LGL F
Sbjct: 73 ATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQA-VESAKKVSSSFTEDSTIDGLLGLAFS 131
Query: 203 EISIGKAI--PVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYV 260
++ +++ L PVF+ D D Y G TY
Sbjct: 132 TLNTVSPTQQKTFFDNAKASL-DSPVFT----ADLGYHAPGTYNFGFIDTTAYTGSITYT 186
Query: 261 PV-TKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIIT----QINHAIG 315
V TK+G+W++ + T + ST + IAD+GT+LL P T+++ Q++ A
Sbjct: 187 AVSTKQGFWEWTSTGYAVGSGT--FKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAKS 244
Query: 316 ASGV 319
+S V
Sbjct: 245 SSSV 248
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 93/235 (39%), Gaps = 35/235 (14%)
Query: 78 IVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXX 137
+ A N +D Y V +G+P+ T++++ DTGSSN W+ + K Y
Sbjct: 5 VPATNQLVD--YVVNVGVGSPATTYSLLVDTGSSNTWLGADKSYVKTSTSSATSDK---- 58
Query: 138 XXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGIL 197
++ YG+G+ SG D V +G L + Q A++++ DGIL
Sbjct: 59 ---------VSVTYGSGSFSGTEYTDTVTLGSLTIPKQSIGVASRDSGF----DGVDGIL 105
Query: 198 GLGFQEISIGKAIP--------VWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXX-XXX 248
G+G ++++G P V N+ QG + + +
Sbjct: 106 GVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGAT 165
Query: 249 DPDHYKGEHTYVPVTK----KGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSL 299
D Y G TY P+T YW + G +T S+ I D+GT+L
Sbjct: 166 DSSKYTGSITYTPITSTSPASAYWGINQS--IRYGSSTSILSS-TAGIVDTGTTL 217
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 99/246 (40%), Gaps = 35/246 (14%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y ++ +G+ Q TV+ DTGSS+LWV V + +S+A
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSA 73
Query: 149 --------IQYGTGAIS-GFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGL 199
I+YG S G F +D V G + +KNQ F + T + GI+G+
Sbjct: 74 QNLNQDFSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVTT-------TSVDQGIMGI 126
Query: 200 GFQEISIGKAIPVWYNMLD--------QGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPD 251
GF G YN+ D QG++ + +S +LN + D
Sbjct: 127 GFTADEAG------YNLYDNVPVTLKKQGIINKNAYSLYLNSE--DASTGKIIFGGVDNA 178
Query: 252 HYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQIN 311
Y G T +PVT + +G + DG + ST + + DSGT++ + +
Sbjct: 179 KYTGTLTALPVTSSVELRVHLGSINFDGTS---VSTNADVVLDSGTTITYFSQSTADKFA 235
Query: 312 HAIGAS 317
+GA+
Sbjct: 236 RIVGAT 241
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 111/260 (42%), Gaps = 37/260 (14%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAK--CYFSVXXXXXXXXXXXXXXXXXRNGTS 146
Y ++++G+ +Q VI DTGSS+LW+P + C + TS
Sbjct: 14 YTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTS 73
Query: 147 AA------IQYGTGAIS-GFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGL 199
I+YG G+ + G +D V +G + V++Q F A++ +A+ GILG+
Sbjct: 74 QNLNTRFDIKYGDGSYAKGKLYKDTVGIGGVSVRDQLF------ANVWSTSAR-KGILGI 126
Query: 200 GFQEISIGKAIPVWYNML-----DQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYK 254
GFQ G+A Y+ L +QG++ + +S +LN D Y
Sbjct: 127 GFQS---GEATEFDYDNLPISLRNQGIIGKAAYSLYLN--SAEASTGQIIFGGIDKAKYS 181
Query: 255 GEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAI 314
G +P+T + + V + G N + DSGT++ +I+ I +AI
Sbjct: 182 GSLVDLPITSEKKLTVGLRSVNVRGRN---VDANTNVLLDSGTTISYFTRSIVRNILYAI 238
Query: 315 GA--------SGVISQECKT 326
GA + V +CKT
Sbjct: 239 GAQMKFDSAGNKVYVADCKT 258
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 95/223 (42%), Gaps = 25/223 (11%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y ++++G+ +Q VI DTGSS+LWVP V +G+SA+
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSAS 73
Query: 149 --------IQYGTGAIS-GFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGL 199
I YG G+ S G +D V G + +KNQ + SI GILG+
Sbjct: 74 QDLNTPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQ-VLADVDSTSID------QGILGV 126
Query: 200 GFQEISIGKA---IPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGE 256
G++ G + +PV + QG++ + +S +LN D Y G
Sbjct: 127 GYKTNEAGGSYDNVPV--TLKKQGVIAKNAYSLYLNS--PDAATGQIIFGGVDNAKYSGS 182
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSL 299
+PVT + +G V + G+T + + + DSGT++
Sbjct: 183 LIALPVTSDRELRISLGSVEVSGKTIN--TDNVDVLLDSGTTI 223
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 95/223 (42%), Gaps = 25/223 (11%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSA- 147
Y ++++G+ +Q VI DTGSS+LWVP V +G+SA
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQTADFCKQKGTYDPSGSSAS 73
Query: 148 -------AIQYGTGAIS-GFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGL 199
+I YG G+ S G +D V G + +KNQ + SI GILG+
Sbjct: 74 QDLNTPFSIGYGDGSSSQGTLYKDTVGFGGVSIKNQ-VLADVDSTSID------QGILGV 126
Query: 200 GFQEISIGKA---IPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGE 256
G++ G + +PV + QG++ + +S +LN D Y G
Sbjct: 127 GYKTNEAGGSYDNVPV--TLKKQGVIAKNAYSLYLNS--PDSATGQIIFGGVDNAKYSGS 182
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSL 299
+PVT + +G V + G+T + + + DSGT++
Sbjct: 183 LIALPVTSDRELRISLGSVEVSGKTIN--TDNVDVLLDSGTTI 223
>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|B Chain B, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|D Chain D, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 176
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 249 DPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIIT 308
DP HY+G Y+ + K G WQ +M V + G +T C GC A+ D+G S ++G T+ I
Sbjct: 12 DPQHYEGNFHYINLIKTGVWQIQMKGVSV-GSSTLLCEDGCLALVDTGASYISGSTSSIE 70
Query: 309 QINHAIGA 316
++ A+GA
Sbjct: 71 KLMEALGA 78
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 20/247 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+ IGTP Q ++ DTGSSN V + G
Sbjct: 15 YYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSY-----IDTYFDTERSSTYRSKGFDVT 69
Query: 149 IQYGTGAISGFFSQDNVKVGDLVVKNQDF---IEATKEASITFLAA-KFDGILGLGFQEI 204
++Y G+ +GF +D V + N F I E+ FL K++GILGL + +
Sbjct: 70 VKYTQGSWTGFVGEDLVTIPKGF--NTSFLVNIATIFESENFFLPGIKWNGILGLAYATL 127
Query: 205 S-IGKAIPVWYNMLDQGLVKEPVFSFW-----LNRDXXXXXXXXXXXXXXDPDHYKGEHT 258
+ ++ +++ L VFS L +P YKG+
Sbjct: 128 AKPSSSLETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIW 187
Query: 259 YVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHAIG 315
Y P+ ++ Y+Q E+ + I G++ N AI DSGT+LL P + + A+
Sbjct: 188 YTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVA 247
Query: 316 ASGVISQ 322
+ +I +
Sbjct: 248 RASLIPE 254
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 89/219 (40%), Gaps = 11/219 (5%)
Query: 86 DAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGT 145
D++Y VSIGTP+Q + FDTGSS+LWV S++ S +G
Sbjct: 14 DSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATGHAIYTPSKSSTSKKVSGA 73
Query: 146 S-AAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEI 204
S + + SG D V +G V Q AT+ ++ G++GL F
Sbjct: 74 SWSISYGDGSSSSGDVYTDKVTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAFDSG 133
Query: 205 SIGKAIP--VWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPV 262
+ + P W++ L EP+F+ D D KG Y PV
Sbjct: 134 NQVRPHPQKTWFSNAASSLA-EPLFT----ADLRHGQNGSYNFGYIDTSVAKGPVAYTPV 188
Query: 263 -TKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLL 300
+G+W+F + G S + IAD+GT+LL
Sbjct: 189 DNSQGFWEFTASGYSVGGGKLNRNS--IDGIADTGTTLL 225
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 96/241 (39%), Gaps = 25/241 (10%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWV--PSAKCYFSVXXXXXXXXXXXXXXXXXRNGTS 146
Y +VS+G+ Q TVI DTGSS+ WV +A+C V G +
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAA 73
Query: 147 AAIQYGTGAIS-GFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQ--- 202
I+YG G+ S G + +D V + + + Q + T+ + GILG+G+
Sbjct: 74 FTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQ-------TSVDQGILGIGYTSNE 126
Query: 203 ---EISIGKAIPVWYN----MLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKG 255
+ S + P + N + QG ++ +S +LN D Y G
Sbjct: 127 AVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNS--PSAETGTIIFGGVDNAKYSG 184
Query: 256 EHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIG 315
+ VT + V + G + + G A+ DSGT+L P+ Q+ G
Sbjct: 185 KLVAEQVTSSQALTISLASVNLKGSSFSF---GDGALLDSGTTLTYFPSDFAAQLADKAG 241
Query: 316 A 316
A
Sbjct: 242 A 242
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 94/231 (40%), Gaps = 23/231 (9%)
Query: 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYF-------SVXXXXXXX 131
V LNN Y +++IG+ Q F VI DTGSS+LWVP A S
Sbjct: 5 VTLNN-EHVSYAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCDKPRPGQSADFCKGKG 63
Query: 132 XXXXXXXXXXRN-GTSAAIQYGTGAIS-GFFSQDNVKVGDLVVKNQDFIEATKEASITFL 189
+N GT I YG G+ S G +D V G + Q F + TK SI
Sbjct: 64 IYTPKSSTTSQNLGTPFYIGYGDGSSSQGTLYKDTVGFGGASITKQVFADITK-TSIP-- 120
Query: 190 AAKFDGILGLGFQ-EISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXX 248
GILG+G++ + G V + +QG++ + +S +LN
Sbjct: 121 ----QGILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNS--PNAATGQIIFGGV 174
Query: 249 DPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSL 299
D Y G VPVT + + + G+ + + + DSGT++
Sbjct: 175 DKAKYSGSLIAVPVTSDRELRITLNSLKAVGKN---INGNIDVLLDSGTTI 222
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 21/220 (9%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXX------XXXXXXXXXXXXXXR 142
Y ++++G+ Q TV+ DTGSS+LWVP ++ +
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWVPDSQVSCQAGQGQDPNFCKNEGTYSPSSSSSSQ 73
Query: 143 NGTSA-AIQYGTGAIS-GFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLG 200
N S +I+YG G S G + +D + G + + Q F + T + GILG+G
Sbjct: 74 NLNSPFSIEYGDGTTSQGTWYKDTIGFGGISITKQQFADVTS-------TSVDQGILGIG 126
Query: 201 FQ-EISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTY 259
++ + G V + +QG++ + +S +LN D Y G
Sbjct: 127 YKTHEAEGNYDNVPVTLKNQGIISKNAYSLYLNS--RQATSGQIIFGGVDNAKYSGTLIA 184
Query: 260 VPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSL 299
+PVT + + V + G++ + + + DSGT++
Sbjct: 185 LPVTSDNELRIHLNTVKVAGQS---INADVDVLLDSGTTI 221
>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound
To Penicillopepsin: Phosphorus-Containing Peptide
Analogues
pdb|1PPM|E Chain E, Crystallographic Analysis Of Transition-state Mimics Bound
To Penicillopepsin: Phosphorus-containing Peptide
Analogues
pdb|1APT|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APU|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APV|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1APW|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1PPK|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Phosphorous-Containing Peptide
Analogues
pdb|1BXO|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl
Cyclo[(2s)-2-[[(1r)-1-(N-(L-N-(3-
Methylbutanoyl)valyl-L-Aspartyl)amino)-3-Methylbut Yl]
Hydroxyphosphinyloxy]-3-(3-Aminomethyl) Phenylpropanoate
pdb|1BXQ|A Chain A, Acid Proteinase (Penicillopepsin) Complex With Phosphonate
Inhibitor.
pdb|2WEA|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl[cyclo-7[(2r)-((N-Valyl)
Amino)-2-(Hydroxyl-(1s)-1-Methyoxycarbonyl-2-
Phenylethoxy)
Phosphinyloxy-Ethyl]-1-Naphthaleneacetamide], Sodium
Salt
pdb|2WEB|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl(2s)-[1-(((n-formyl)-l-
Valyl)amino-2-(2-naphthyl)ethyl)hydroxyphosphinyloxy]-3-
Phenylpropanoate, Sodium Salt
pdb|2WEC|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl(2s)-[1-(((N-(1-
Naphthaleneacetyl))-L-Valyl)aminomethyl)hydroxy
Phosphinyloxy]-3-Phenylpropanoate, Sodium Salt
pdb|2WED|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Macrocyclic
Inhibitor:methyl[cyclo-7[(2r)-
((n-valyl)amino)-2-(hydroxyl-(1s)-1-methyoxycarbonyl-2-
Phenylethoxy)phosphinyloxy-ethyl]-1-
naphthaleneacetamide], Sodium Salt
pdb|3APP|A Chain A, Structure And Refinement Of Penicillopepsin At 1.8
Angstroms Resolution
Length = 323
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 100/229 (43%), Gaps = 19/229 (8%)
Query: 86 DAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGT 145
D +Y V+IG T + FDTGS++LWV S + +G
Sbjct: 14 DEEYITPVTIG--GTTLNLNFDTGSADLWVFSTE--LPASQQSGHSVYNPSATGKELSGY 69
Query: 146 SAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLA-AKFDGILGLGFQE 203
+ +I YG G + SG D+V VG + Q ++A ++ S F DG+LGL F
Sbjct: 70 TWSISYGDGSSASGNVFTDSVTVGGVTAHGQA-VQAAQQISAQFQQDTNNDGLLGLAFSS 128
Query: 204 ISI--GKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVP 261
I+ ++ +++ + L +P+F+ L D Y G TY
Sbjct: 129 INTVQPQSQTTFFDTVKSSLA-QPLFAVALKHQ----QPGVYDFGFIDSSKYTGSLTYTG 183
Query: 262 V-TKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQ 309
V +G+W F + D G +G G + IAD+GT+LL ++++Q
Sbjct: 184 VDNSQGFWSFNV-DSYTAGSQSG---DGFSGIADTGTTLLLLDDSVVSQ 228
>pdb|1IZD|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase
pdb|1IZE|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase Complexed With Pepstatin
Length = 323
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 16/219 (7%)
Query: 86 DAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGT 145
D +Y +V++G T + FDTGS++LWV S++ S +G
Sbjct: 14 DEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTPSS--ERSGHDYYTPGSSAQKIDGA 69
Query: 146 SAAIQYGTGA-ISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEI 204
+ +I YG G+ SG +D V VG + +Q A K +S DG+LGL F I
Sbjct: 70 TWSISYGDGSSASGDVYKDKVTVGGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSI 129
Query: 205 SIGKAIP--VWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPV 262
+ + P +++ + L EP+F+ L + D Y G TY V
Sbjct: 130 NTVQPTPQKTFFDNVKSSL-SEPIFAVALKHN----APGVYDFGYTDSSKYTGSITYTDV 184
Query: 263 -TKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLL 300
+G+W F I +++ TG IAD+GT+LL
Sbjct: 185 DNSQGFWGFTADGYSIGSDSSSDSITG---IADTGTTLL 220
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis
pdb|1IBQ|B Chain B, Aspergillopepsin From Aspergillus Phoenicis
Length = 325
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 97/220 (44%), Gaps = 17/220 (7%)
Query: 86 DAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGT 145
D +Y V++G T + FDTGS++LWV S + S +G
Sbjct: 13 DEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELPSS--EQTGHDLYTPSSSATKLSGY 68
Query: 146 SAAIQYGTGA-ISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLA-AKFDGILGLGFQE 203
S I YG G+ SG +D V VG V N+ +EA + S F+ DG+LGL F
Sbjct: 69 SWDISYGDGSSASGDVYRDTVTVGG-VTTNKQAVEAASKISSEFVQDTANDGLLGLAFSS 127
Query: 204 ISI--GKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVP 261
I+ KA +++ + L P+F+ L D D Y G TY
Sbjct: 128 INTVQPKAQTTFFDTVKSQL-DSPLFAVQLKHD----APGVYDFGYIDDSKYTGSITYTD 182
Query: 262 V-TKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLL 300
+ +GYW F I ++ S+G +AIAD+GT+L+
Sbjct: 183 ADSSQGYWGFSTDGYSIGDGSS--SSSGFSAIADTGTTLI 220
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 98/244 (40%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 88
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y GA +G D V + G V + T+ + ++GILGL + EI+
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 314 IGAS 317
I A+
Sbjct: 268 IKAA 271
>pdb|2QYP|A Chain A, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
pdb|2QYP|B Chain B, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
Length = 91
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Query: 320 ISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTR 361
+S+EC+ +VD YG +IL +L+ E P+ +CS + LC+ GTR
Sbjct: 46 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS--GTR 85
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 388 CSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGE 428
C CE V + + N+T +IL+ +++C +LP E
Sbjct: 8 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 48
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 98/244 (40%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 88
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y GA +G D V + G V + T+ + ++GILGL + EI+
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 314 IGAS 317
I A+
Sbjct: 268 IKAA 271
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 98/244 (40%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 40 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 94
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y GA +G D V + G V + T+ + ++GILGL + EI+
Sbjct: 95 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 154
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 155 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 213
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 214 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 273
Query: 314 IGAS 317
I A+
Sbjct: 274 IKAA 277
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 98/244 (40%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 84
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y GA +G D V + G V + T+ + ++GILGL + EI+
Sbjct: 85 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 145 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 314 IGAS 317
I A+
Sbjct: 264 IKAA 267
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 98/244 (40%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 108
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y GA +G D V + G V + T+ + ++GILGL + EI+
Sbjct: 109 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 168
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 169 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 227
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 228 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 287
Query: 314 IGAS 317
I A+
Sbjct: 288 IKAA 291
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 19/236 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 74
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 207 --GKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTK 264
P + +++ Q V +FS L D Y G Y P+ +
Sbjct: 135 PDDSLEPFFDSLVKQTHVPN-LFSLQL------CGGGSMIIGGIDHSLYTGSLWYTPIRR 187
Query: 265 KGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHAIGAS 317
+ Y++ + V I+G+ N +I DSGT+ L P + +I A+
Sbjct: 188 EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAA 243
>pdb|1M12|A Chain A, Nmr Solution Structure Of Human Saposin C
pdb|1SN6|A Chain A, Nmr Solution Structure Of Human Saposin C In Sds Micelles
Length = 84
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 320 ISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCT 356
+S+EC+ +VD YG +IL +L+ E P+ +CS + LC+
Sbjct: 43 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 79
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 388 CSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGE 428
C CE V + + N+T +IL+ +++C +LP E
Sbjct: 5 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 45
>pdb|2Z9A|A Chain A, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
pdb|2Z9A|B Chain B, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
Length = 88
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 320 ISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCT 356
+S+EC+ +VD YG +IL +L+ E P+ +CS + LC+
Sbjct: 45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 81
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 388 CSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGE 428
C CE V + + N+T +IL+ +++C +LP E
Sbjct: 7 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 47
>pdb|2GTG|A Chain A, Crystal Structure Of Human Saposin C
Length = 83
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 320 ISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCT 356
+S+EC+ +VD YG +IL +L+ E P+ +CS + LC+
Sbjct: 45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 81
Score = 29.6 bits (65), Expect = 3.3, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 388 CSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGE 428
C CE V + + N+T +IL+ +++C +LP E
Sbjct: 7 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE 47
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 14 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 68
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 69 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 128
Query: 207 --GKAIPVWYNMLDQGLVKEPVFSFWL--------NRDXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS L + D Y G
Sbjct: 129 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 187
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 188 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 247
Query: 314 IGAS 317
I A+
Sbjct: 248 IKAA 251
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 69
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 70 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 129
Query: 207 --GKAIPVWYNMLDQGLVKEPVFSFWL--------NRDXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS L + D Y G
Sbjct: 130 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 188
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 189 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 248
Query: 314 IGAS 317
I A+
Sbjct: 249 IKAA 252
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 97/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 88
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y GA +G D V + G V + T+ + ++GILGL + EI+
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSG + L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGCTNLRLPKKVFEAAVKS 267
Query: 314 IGAS 317
I A+
Sbjct: 268 IKAA 271
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 88
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 314 IGAS 317
I A+
Sbjct: 268 IKAA 271
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 89
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 90 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 149
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 150 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 208
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 209 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 268
Query: 314 IGAS 317
I A+
Sbjct: 269 IKAA 272
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 88
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 314 IGAS 317
I A+
Sbjct: 268 IKAA 271
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 89
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 90 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 149
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 150 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 208
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 209 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 268
Query: 314 IGAS 317
I A+
Sbjct: 269 IKAA 272
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 88
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 314 IGAS 317
I A+
Sbjct: 268 IKAA 271
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 88
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 314 IGAS 317
I A+
Sbjct: 268 IKAA 271
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 32 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 86
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 87 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 146
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 147 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 205
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 206 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 265
Query: 314 IGAS 317
I A+
Sbjct: 266 IKAA 269
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 71
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 72 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 131
Query: 207 --GKAIPVWYNMLDQGLVKEPVFSFWL--------NRDXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS L + D Y G
Sbjct: 132 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 190
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 191 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 250
Query: 314 IGAS 317
I A+
Sbjct: 251 IKAA 254
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 87
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 147
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 148 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 206
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 207 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 266
Query: 314 IGAS 317
I A+
Sbjct: 267 IKAA 270
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 88
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 89 VPYCQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 149 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 267
Query: 314 IGAS 317
I A+
Sbjct: 268 IKAA 271
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 77 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 131
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 132 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 191
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 192 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 250
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 251 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 310
Query: 314 IGAS 317
I A+
Sbjct: 311 IKAA 314
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 76 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 130
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 131 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 190
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 191 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 249
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 250 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 309
Query: 314 IGAS 317
I A+
Sbjct: 310 IKAA 313
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 87
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 147
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 148 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 206
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 207 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 266
Query: 314 IGAS 317
I A+
Sbjct: 267 IKAA 270
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 37 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 91
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 92 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 151
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 152 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 210
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 211 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 270
Query: 314 IGAS 317
I A+
Sbjct: 271 IKAA 274
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 87
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 147
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 148 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 206
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 207 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 266
Query: 314 IGAS 317
I A+
Sbjct: 267 IKAA 270
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 74
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 135 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 253
Query: 314 IGAS 317
I A+
Sbjct: 254 IKAA 257
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 84
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 145 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 314 IGAS 317
I A+
Sbjct: 264 IKAA 267
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 72
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 133 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 314 IGAS 317
I A+
Sbjct: 252 IKAA 255
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 69
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 70 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 129
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 130 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 188
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 189 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 248
Query: 314 IGAS 317
I A+
Sbjct: 249 IKAA 252
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 108
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 109 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 168
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 169 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 227
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 228 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 287
Query: 314 IGAS 317
I A+
Sbjct: 288 IKAA 291
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 77
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 78 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 137
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 138 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 196
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 197 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 256
Query: 314 IGAS 317
I A+
Sbjct: 257 IKAA 260
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 71
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 72 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 131
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 132 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 190
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 191 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 250
Query: 314 IGAS 317
I A+
Sbjct: 251 IKAA 254
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 77 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 131
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 132 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 191
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 192 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 250
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 251 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 310
Query: 314 IGAS 317
I A+
Sbjct: 311 IKAA 314
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 77
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 78 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 137
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 138 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 196
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 197 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 256
Query: 314 IGAS 317
I A+
Sbjct: 257 IKAA 260
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 84
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 145 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 314 IGAS 317
I A+
Sbjct: 264 IKAA 267
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 84
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 145 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 263
Query: 314 IGAS 317
I A+
Sbjct: 264 IKAA 267
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 74
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 135 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 253
Query: 314 IGAS 317
I A+
Sbjct: 254 IKAA 257
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 74
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 135 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 253
Query: 314 IGAS 317
I A+
Sbjct: 254 IKAA 257
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 31 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 85
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 86 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 145
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 146 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 204
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 205 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 264
Query: 314 IGAS 317
I A+
Sbjct: 265 IKAA 268
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 72
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 133 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 314 IGAS 317
I A+
Sbjct: 252 IKAA 255
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 19 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 73
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 74 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 133
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 134 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 192
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 193 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 252
Query: 314 IGAS 317
I A+
Sbjct: 253 IKAA 256
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 72
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 133 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 314 IGAS 317
I A+
Sbjct: 252 IKAA 255
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKGV--Y 72
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 133 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 314 IGAS 317
I A+
Sbjct: 252 IKAA 255
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 72
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 133 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 251
Query: 314 IGAS 317
I A+
Sbjct: 252 IKAA 255
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 21 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 75
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 76 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 135
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 136 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 194
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 195 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 254
Query: 314 IGAS 317
I A+
Sbjct: 255 IKAA 258
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA 148
Y+ E+++G+P QT ++ DTGSSN V +A F R G
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF---LHRYYQRQLSSTYRDLRKG--VY 84
Query: 149 IQYGTGAISGFFSQDNVKV--GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 206
+ Y G G D V + G V + T+ + ++GILGL + EI+
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 207 --GKAIPVWYNMLDQGLVKEPVFS-------FWLNR-DXXXXXXXXXXXXXXDPDHYKGE 256
P + +++ Q V +FS F LN+ + D Y G
Sbjct: 145 PDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCN---AIADSGTSLLAGPTTIITQINHA 313
Y P+ ++ Y++ + V I+G+ N +I DSGT+ L P + +
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVAS 263
Query: 314 IGAS 317
I A+
Sbjct: 264 IKAA 267
>pdb|2DOB|A Chain A, Crystal Structure Of Human Saposin A
Length = 83
Score = 36.2 bits (82), Expect = 0.033, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 388 CSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESA 430
C C+ V + L+ N T ++IL Y+ + CD LP PN ++
Sbjct: 6 CDICKDVVTAAGDXLKDNATEEEILVYLEKTCDWLPKPNXSAS 48
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 321 SQECKTLVDQYGKTILEMLIAE-TQPQKICSQMGLC 355
S CK +VD Y IL+++ E ++P ++CS + LC
Sbjct: 46 SASCKEIVDSYLPVILDIIKGEXSRPGEVCSALNLC 81
>pdb|4DDJ|A Chain A, Crystal Structure Of Saposin A In Complex With
Lauryldimethylamine-N- Oxide (Ldao)
Length = 83
Score = 35.8 bits (81), Expect = 0.043, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 388 CSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPN 426
C C+ V + L+ N T ++IL Y+ + CD LP PN
Sbjct: 6 CDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPN 44
Score = 33.5 bits (75), Expect = 0.21, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 320 ISQECKTLVDQYGKTILEMLIAE-TQPQKICSQMGLC 355
+S CK +VD Y IL+++ E ++P ++CS + LC
Sbjct: 45 MSASCKEIVDSYLPVILDIIKGEMSRPGEVCSALNLC 81
>pdb|2R0R|A Chain A, Crystal Structure Of Human Saposin D Variant Sapd K9e
pdb|2R0R|B Chain B, Crystal Structure Of Human Saposin D Variant Sapd K9e
Length = 85
Score = 32.3 bits (72), Expect = 0.57, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 386 AMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSP 425
C CE V ++ L +N T +IL + + C LP P
Sbjct: 2 GFCEVCEKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP 41
Score = 28.5 bits (62), Expect = 6.9, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 322 QECKTLVDQYGKTILEMLIAETQPQKICSQMGLC 355
++C V +Y ++E+L+ P +C ++G C
Sbjct: 44 KQCDQFVAEYEPVLIEILVEVMDPSFVCLKIGAC 77
>pdb|1N69|A Chain A, Crystal Structure Of Human Saposin B
pdb|1N69|B Chain B, Crystal Structure Of Human Saposin B
pdb|1N69|C Chain C, Crystal Structure Of Human Saposin B
Length = 81
Score = 32.0 bits (71), Expect = 0.66, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 324 CKTLVDQYGKTILEMLIAETQPQKICSQMGLC 355
CK + QY + ++M++ QP++IC+ +G C
Sbjct: 49 CKNYISQYSEIAIQMMM-HMQPKEICALVGFC 79
>pdb|2RB3|A Chain A, Crystal Structure Of Human Saposin D
pdb|2RB3|B Chain B, Crystal Structure Of Human Saposin D
pdb|2RB3|C Chain C, Crystal Structure Of Human Saposin D
pdb|2RB3|D Chain D, Crystal Structure Of Human Saposin D
Length = 85
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 386 AMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSP 425
C C+ V ++ L +N T +IL + + C LP P
Sbjct: 2 GFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP 41
Score = 28.5 bits (62), Expect = 6.9, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 322 QECKTLVDQYGKTILEMLIAETQPQKICSQMGLC 355
++C V +Y ++E+L+ P +C ++G C
Sbjct: 44 KQCDQFVAEYEPVLIEILVEVMDPSFVCLKIGAC 77
>pdb|2R1Q|A Chain A, Crystal Structure Of Iodinated Human Saposin D In Space
Group C2221
Length = 85
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 386 AMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSP 425
C C+ V ++ L +N T +IL + + C LP P
Sbjct: 2 GFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP 41
>pdb|3BQP|A Chain A, Crystal Structure Of Human Saposin D (Orthorhombic)
pdb|3BQP|B Chain B, Crystal Structure Of Human Saposin D (Orthorhombic)
pdb|3BQQ|C Chain C, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|A Chain A, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|B Chain B, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|D Chain D, Crystal Structure Of Human Saposin D (Triclinic)
Length = 80
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 386 AMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSP 425
C C+ V ++ L +N T +IL + + C LP P
Sbjct: 3 GFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP 42
Score = 28.5 bits (62), Expect = 6.9, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 322 QECKTLVDQYGKTILEMLIAETQPQKICSQMGLC 355
++C V +Y ++E+L+ P +C ++G C
Sbjct: 45 KQCDQFVAEYEPVLIEILVEVMDPSFVCLKIGAC 78
>pdb|3KB5|A Chain A, Pry-Spry Domain Of Human Trim72
Length = 193
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 24 ALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVR---RYNLHGSLGD 73
A+P+ GL +GLR+ K+ L +KE +R+P R R L+ S GD
Sbjct: 97 AVPSQGLWLLGLREGKI-----LEAHVEAKEPRALRSPERRPTRIGLYLSFGD 144
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From
Thermoplasma Acidophilum
Length = 77
Score = 28.9 bits (63), Expect = 5.9, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 152 GTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDG-ILGLGFQEISIGKAI 210
G G G + +VK GD+V K+QD +E + + + G I+ + ++E G+ +
Sbjct: 10 GEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYRE---GQVV 66
Query: 211 PVWYNML 217
PV +L
Sbjct: 67 PVGSTLL 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,434,201
Number of Sequences: 62578
Number of extensions: 427484
Number of successful extensions: 1145
Number of sequences better than 100.0: 132
Number of HSP's better than 100.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 790
Number of HSP's gapped (non-prelim): 189
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)