Query 013993
Match_columns 432
No_of_seqs 348 out of 2009
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 00:48:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00165 aspartyl protease; Pr 100.0 2.6E-54 5.6E-59 439.7 30.2 294 29-333 63-374 (482)
2 cd06098 phytepsin Phytepsin, a 100.0 8.1E-51 1.8E-55 398.1 26.5 257 79-343 1-263 (317)
3 cd05490 Cathepsin_D2 Cathepsin 100.0 1E-49 2.3E-54 391.8 27.5 260 83-343 1-271 (325)
4 cd05478 pepsin_A Pepsin A, asp 100.0 2.3E-49 5E-54 388.0 27.7 270 80-357 2-281 (317)
5 cd05486 Cathespin_E Cathepsin 100.0 2.7E-49 5.9E-54 387.3 25.5 254 89-344 1-263 (316)
6 cd05487 renin_like Renin stimu 100.0 7.9E-49 1.7E-53 385.6 27.8 262 81-344 1-272 (326)
7 cd05485 Cathepsin_D_like Cathe 100.0 2.1E-48 4.6E-53 382.8 27.2 263 79-343 2-275 (329)
8 cd05488 Proteinase_A_fungi Fun 100.0 2.6E-48 5.7E-53 380.9 27.2 270 79-357 1-280 (320)
9 cd05477 gastricsin Gastricsins 100.0 4.5E-48 9.7E-53 379.1 27.4 256 86-343 1-266 (318)
10 PTZ00147 plasmepsin-1; Provisi 100.0 6.6E-48 1.4E-52 389.9 28.6 261 74-343 125-397 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.4E-46 3E-51 379.5 28.3 261 74-343 124-396 (450)
12 cd06097 Aspergillopepsin_like 100.0 8.2E-44 1.8E-48 342.4 24.7 230 89-326 1-242 (278)
13 PF00026 Asp: Eukaryotic aspar 100.0 2.1E-43 4.6E-48 345.4 21.8 267 88-357 1-277 (317)
14 KOG1339 Aspartyl protease [Pos 100.0 7.4E-41 1.6E-45 337.1 22.5 241 77-327 35-314 (398)
15 cd05473 beta_secretase_like Be 100.0 3.3E-40 7.2E-45 329.1 23.3 223 87-317 2-240 (364)
16 cd05471 pepsin_like Pepsin-lik 100.0 1.1E-38 2.3E-43 306.9 26.8 227 89-317 1-231 (283)
17 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.8E-39 3.8E-44 319.2 21.6 236 87-343 2-277 (326)
18 PLN03146 aspartyl protease fam 100.0 1.2E-37 2.5E-42 315.8 24.6 214 85-314 81-333 (431)
19 cd05474 SAP_like SAPs, pepsin- 100.0 5.5E-37 1.2E-41 297.4 22.6 218 88-343 2-243 (295)
20 cd05472 cnd41_like Chloroplast 100.0 4.8E-37 1E-41 298.5 17.5 217 88-343 1-247 (299)
21 cd05476 pepsin_A_like_plant Ch 100.0 1.5E-35 3.2E-40 283.1 17.1 199 88-343 1-215 (265)
22 cd05475 nucellin_like Nucellin 100.0 7.5E-34 1.6E-38 272.4 19.4 186 87-307 1-196 (273)
23 cd05489 xylanase_inhibitor_I_l 100.0 1.3E-28 2.9E-33 244.4 19.1 211 95-316 2-257 (362)
24 cd05470 pepsin_retropepsin_lik 99.9 1.4E-23 3.1E-28 172.8 13.0 108 91-199 1-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.9 3.6E-21 7.7E-26 170.2 15.6 136 89-247 1-164 (164)
26 PF05184 SapB_1: Saposin-like 99.0 1.1E-10 2.4E-15 77.0 2.7 38 386-423 2-39 (39)
27 cd05483 retropepsin_like_bacte 98.2 5.9E-06 1.3E-10 65.5 7.4 92 88-201 2-94 (96)
28 KOG1340 Prosaposin [Lipid tran 98.0 2.3E-06 4.9E-11 77.8 2.3 89 323-424 78-167 (218)
29 PF14541 TAXi_C: Xylanase inhi 97.8 3.9E-05 8.4E-10 67.5 5.6 50 267-316 1-57 (161)
30 TIGR02281 clan_AA_DTGA clan AA 97.5 0.00074 1.6E-08 56.3 9.5 101 79-201 2-103 (121)
31 smart00741 SapB Saposin (B) Do 97.5 5.1E-05 1.1E-09 57.3 1.9 40 387-426 2-41 (76)
32 PF03489 SapB_2: Saposin-like 97.5 6.1E-06 1.3E-10 52.8 -3.1 34 322-355 2-35 (35)
33 PF13650 Asp_protease_2: Aspar 97.0 0.006 1.3E-07 47.3 8.7 87 92-200 2-89 (90)
34 PF11925 DUF3443: Protein of u 95.9 0.092 2E-06 51.3 11.3 194 89-305 24-272 (370)
35 cd05479 RP_DDI RP_DDI; retrope 95.8 0.096 2.1E-06 43.8 9.6 92 85-201 13-107 (124)
36 COG3577 Predicted aspartyl pro 95.3 0.14 3E-06 45.9 9.4 105 75-201 92-197 (215)
37 cd05484 retropepsin_like_LTR_2 94.7 0.2 4.4E-06 39.1 7.9 74 89-180 1-77 (91)
38 cd06095 RP_RTVL_H_like Retrope 93.1 0.65 1.4E-05 35.9 7.9 81 92-201 2-84 (86)
39 KOG1340 Prosaposin [Lipid tran 92.8 0.05 1.1E-06 49.8 1.4 42 384-427 35-76 (218)
40 smart00741 SapB Saposin (B) Do 92.2 0.024 5.2E-07 42.3 -1.3 37 319-355 40-76 (76)
41 PF13975 gag-asp_proteas: gag- 87.9 0.98 2.1E-05 33.7 4.4 33 86-120 6-38 (72)
42 PF07966 A1_Propeptide: A1 Pro 87.1 0.35 7.5E-06 29.3 1.2 24 30-53 1-24 (29)
43 PF13650 Asp_protease_2: Aspar 82.6 1.7 3.6E-05 33.3 3.6 29 275-310 3-31 (90)
44 TIGR02281 clan_AA_DTGA clan AA 80.9 2.2 4.7E-05 35.5 3.8 37 265-311 9-45 (121)
45 PF13975 gag-asp_proteas: gag- 79.1 3.5 7.5E-05 30.7 4.1 29 275-310 13-41 (72)
46 PF00077 RVP: Retroviral aspar 78.1 3.3 7.1E-05 32.6 4.0 29 90-120 7-35 (100)
47 cd05484 retropepsin_like_LTR_2 75.4 3.9 8.4E-05 31.8 3.7 31 274-311 4-34 (91)
48 cd05483 retropepsin_like_bacte 73.9 4.9 0.00011 30.9 3.9 31 274-311 6-36 (96)
49 cd06095 RP_RTVL_H_like Retrope 73.1 4.3 9.3E-05 31.3 3.3 29 275-310 3-31 (86)
50 PF13798 PCYCGC: Protein of un 69.9 7.6 0.00016 33.5 4.3 37 384-420 110-146 (158)
51 cd05479 RP_DDI RP_DDI; retrope 66.8 7.4 0.00016 32.3 3.7 29 275-310 21-49 (124)
52 cd05482 HIV_retropepsin_like R 64.4 9.2 0.0002 29.7 3.5 26 92-119 2-27 (87)
53 PF07172 GRP: Glycine rich pro 61.3 5.2 0.00011 31.7 1.6 8 1-8 1-8 (95)
54 PF09668 Asp_protease: Asparty 58.0 28 0.0006 29.0 5.5 80 86-181 22-103 (124)
55 TIGR03698 clan_AA_DTGF clan AA 56.5 8.4 0.00018 31.1 2.1 23 288-310 16-39 (107)
56 PF12384 Peptidase_A2B: Ty3 tr 54.2 17 0.00037 31.7 3.6 28 91-118 35-62 (177)
57 COG3577 Predicted aspartyl pro 53.8 18 0.00039 32.8 3.9 31 274-311 109-139 (215)
58 PF00077 RVP: Retroviral aspar 52.6 11 0.00024 29.6 2.2 27 274-307 9-35 (100)
59 PF08284 RVP_2: Retroviral asp 51.5 1.2E+02 0.0025 25.6 8.4 29 87-117 20-48 (135)
60 cd05481 retropepsin_like_LTR_1 50.1 18 0.00039 28.4 3.0 23 289-311 11-33 (93)
61 PF09668 Asp_protease: Asparty 49.3 20 0.00044 29.8 3.3 30 274-310 28-57 (124)
62 COG5550 Predicted aspartyl pro 46.9 13 0.00027 30.9 1.7 22 290-311 28-50 (125)
63 PF03918 CcmH: Cytochrome C bi 43.7 34 0.00073 29.5 3.9 34 384-417 52-85 (148)
64 cd03033 ArsC_15kD Arsenate Red 41.6 36 0.00079 27.7 3.7 35 384-418 6-49 (113)
65 PF12091 DUF3567: Protein of u 40.3 41 0.0009 25.9 3.5 37 389-425 45-81 (85)
66 PRK10853 putative reductase; P 39.1 44 0.00095 27.5 3.8 34 384-417 6-48 (118)
67 PRK02710 plastocyanin; Provisi 37.9 48 0.001 27.2 3.9 35 1-35 1-35 (119)
68 cd06094 RP_Saci_like RP_Saci_l 35.8 2.1E+02 0.0046 22.3 7.4 64 100-181 8-73 (89)
69 TIGR01616 nitro_assoc nitrogen 33.3 46 0.001 27.8 3.1 35 384-418 7-50 (126)
70 TIGR03698 clan_AA_DTGF clan AA 33.1 52 0.0011 26.5 3.3 66 91-172 2-73 (107)
71 KOG3770 Acid sphingomyelinase 30.5 22 0.00047 37.4 0.8 43 385-427 23-68 (577)
72 COG1393 ArsC Arsenate reductas 30.4 62 0.0013 26.6 3.4 35 384-418 7-50 (117)
73 PF08671 SinI: Anti-repressor 30.1 87 0.0019 19.1 3.1 23 395-417 6-28 (30)
74 cd03035 ArsC_Yffb Arsenate Red 29.2 77 0.0017 25.4 3.7 33 385-417 6-47 (105)
75 TIGR00014 arsC arsenate reduct 28.7 60 0.0013 26.4 3.0 34 385-418 6-48 (114)
76 PRK10026 arsenate reductase; P 28.6 55 0.0012 27.9 2.8 35 384-418 8-51 (141)
77 cd05471 pepsin_like Pepsin-lik 27.7 74 0.0016 29.7 4.0 44 77-120 170-221 (283)
78 cd06098 phytepsin Phytepsin, a 26.3 81 0.0018 30.6 4.0 39 78-118 181-227 (317)
79 cd03034 ArsC_ArsC Arsenate Red 26.2 70 0.0015 25.9 3.0 35 384-418 5-48 (112)
80 PF03960 ArsC: ArsC family; I 25.2 73 0.0016 25.5 2.9 34 385-418 3-45 (110)
81 cd05476 pepsin_A_like_plant Ch 24.5 1.2E+02 0.0026 28.4 4.7 42 77-118 134-193 (265)
82 PF01456 Mucin: Mucin-like gly 23.5 52 0.0011 27.8 1.8 25 1-27 1-26 (143)
83 PRK14758 hypothetical protein; 23.1 95 0.0021 18.2 2.2 22 1-24 1-22 (27)
84 KOG0141 Isovaleryl-CoA dehydro 22.7 57 0.0012 31.6 2.0 21 400-420 134-154 (421)
85 PLN03146 aspartyl protease fam 22.5 97 0.0021 31.7 3.9 41 78-118 269-324 (431)
86 cd05474 SAP_like SAPs, pepsin- 22.1 1.1E+02 0.0024 29.0 4.0 43 78-120 141-197 (295)
87 cd00303 retropepsin_like Retro 20.7 1.7E+02 0.0036 20.5 4.0 22 289-310 10-31 (92)
88 PF08284 RVP_2: Retroviral asp 20.3 93 0.002 26.2 2.7 23 288-310 32-54 (135)
No 1
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2.6e-54 Score=439.74 Aligned_cols=294 Identities=35% Similarity=0.627 Sum_probs=243.0
Q ss_pred ceEEEeeeeccchhhhhcccCcccchhhhccccccc--cccCCCCCCCCCceeeecccCCceEEEEEEecCCCcEEEEEe
Q 013993 29 GLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRR--YNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIF 106 (432)
Q Consensus 29 ~~~~vpl~k~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~Y~~~i~iGtP~q~~~v~~ 106 (432)
.++||||+|.++.|+...+.+.. ..+.+.... +.............+||.||.|.+|+++|+||||||+|.|+|
T Consensus 63 ~~~~i~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~ 138 (482)
T PTZ00165 63 PAHKVELHRFALLKKKRKKNSEK----GYISRVLTKHKYLETKDPNGLQYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVF 138 (482)
T ss_pred heEEeeeEEcchHHHhhhhHHHH----HhhhhhhhccccccccccccccccceecccccCCeEEEEEEeCCCCceEEEEE
Confidence 68999999987776654443111 111111110 100000000134679999999999999999999999999999
Q ss_pred ecCCCceeeeCCCCCCCcccccCCcccCCCCCCcee--CCc---eEEEEeccCeEEEEEEEEEEEEceeEeeceeEEEEe
Q 013993 107 DTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKR--NGT---SAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEAT 181 (432)
Q Consensus 107 DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~--~~~---~~~~~Y~~gs~~G~~~~D~v~ig~~~~~~~~fg~~~ 181 (432)
||||+++|||+..|. ..+|..|+.||+++|+||+. .+. .+.++|++|++.|.+++|+|++|++.+++|.||+++
T Consensus 139 DTGSS~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~ 217 (482)
T PTZ00165 139 DTGSSNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAI 217 (482)
T ss_pred eCCCCCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEE
Confidence 999999999999997 56899999999999999998 665 688999999999999999999999999999999999
Q ss_pred eecccccccccccceeccccccc---ccCCCCchhhhhhhcCCCCCCeEEEEeccCCCCCCCcEEEECccCCCCC--ccc
Q 013993 182 KEASITFLAAKFDGILGLGFQEI---SIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGVDPDHY--KGE 256 (432)
Q Consensus 182 ~~~~~~~~~~~~~GilGLg~~~~---s~~~~~p~~~~l~~qg~i~~~~fs~~l~~~~~~~~~G~l~fGg~D~s~~--~g~ 256 (432)
..++..|...++|||||||++.+ +.....|++++|++||+|++++||+||+++.+ .+|+|+|||+|++++ .|+
T Consensus 218 ~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~--~~G~l~fGGiD~~~~~~~g~ 295 (482)
T PTZ00165 218 EESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLN--QPGSISFGSADPKYTLEGHK 295 (482)
T ss_pred eccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCC--CCCEEEeCCcCHHHcCCCCc
Confidence 87666677778999999999987 33457899999999999999999999986532 379999999999877 579
Q ss_pred eEEEecCCCCcceEEeceEEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHHHHHhCCcceeeecccc------cccc
Q 013993 257 HTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKT------LVDQ 330 (432)
Q Consensus 257 l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i~~~i~a~g~~~~~C~~------~v~~ 330 (432)
++|+|+.+..||+|.+++|.|+++.+..+..++.||+||||+++++|++++++|++++++. .+|.+ +.+.
T Consensus 296 i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~----~~C~~~~~lP~itf~ 371 (482)
T PTZ00165 296 IWWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE----EDCSNKDSLPRISFV 371 (482)
T ss_pred eEEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc----ccccccccCCceEEE
Confidence 9999999999999999999999988777667889999999999999999999999999976 48875 4455
Q ss_pred ccc
Q 013993 331 YGK 333 (432)
Q Consensus 331 yg~ 333 (432)
+++
T Consensus 372 f~g 374 (482)
T PTZ00165 372 LED 374 (482)
T ss_pred ECC
Confidence 654
No 2
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=8.1e-51 Score=398.12 Aligned_cols=257 Identities=76% Similarity=1.292 Sum_probs=231.3
Q ss_pred eeecccCCceEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEeccCeEEE
Q 013993 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISG 158 (432)
Q Consensus 79 ~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G 158 (432)
+||.|+.|.+|+++|+||||||++.|+|||||+++||++..|.....|..|+.|++++|+||+..+..+.+.|++|+++|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G 80 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISG 80 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEE
Confidence 57899999999999999999999999999999999999999964568999999999999999999999999999999999
Q ss_pred EEEEEEEEEceeEeeceeEEEEeeecccccccccccceecccccccccCCCCchhhhhhhcCCCCCCeEEEEeccCCCCC
Q 013993 159 FFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGE 238 (432)
Q Consensus 159 ~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~fs~~l~~~~~~~ 238 (432)
.+++|+|++|+..++++.|+++..+.+..|....++||||||++..+..+..|++++|++||+|++++||+||++.....
T Consensus 81 ~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~ 160 (317)
T cd06098 81 FFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEE 160 (317)
T ss_pred EEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999999998776555666678999999999888777889999999999999999999998764434
Q ss_pred CCcEEEECccCCCCCccceEEEecCCCCcceEEeceEEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHHHHHhCCcc
Q 013993 239 EGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASG 318 (432)
Q Consensus 239 ~~G~l~fGg~D~s~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i~~~i~a~g 318 (432)
.+|+|+|||+|+++|.|+++|+|+.+.+||.|.+++|.|+++.+.++.....+|+||||+++++|++++++|.
T Consensus 161 ~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~------- 233 (317)
T cd06098 161 EGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN------- 233 (317)
T ss_pred CCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-------
Confidence 5899999999999999999999999889999999999999998776667789999999999999999887775
Q ss_pred eeeecccc------ccccccceehhhhhhcc
Q 013993 319 VISQECKT------LVDQYGKTILEMLIAET 343 (432)
Q Consensus 319 ~~~~~C~~------~v~~yg~~ii~~~~~~~ 343 (432)
+..+|.. +.+.|++..+.+...++
T Consensus 234 -~~~~C~~~~~~P~i~f~f~g~~~~l~~~~y 263 (317)
T cd06098 234 -SAVDCNSLSSMPNVSFTIGGKTFELTPEQY 263 (317)
T ss_pred -ccCCccccccCCcEEEEECCEEEEEChHHe
Confidence 4578984 55678888888777665
No 3
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1e-49 Score=391.83 Aligned_cols=260 Identities=50% Similarity=0.912 Sum_probs=230.8
Q ss_pred ccCCceEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCC-CcccccCCcccCCCCCCceeCCceEEEEeccCeEEEEEE
Q 013993 83 NFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYF-SVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFS 161 (432)
Q Consensus 83 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G~~~ 161 (432)
|+.|.+|+++|.||||||+|.|+|||||+++||++..|.. ...|..|+.|+|++|+||+..++.|.+.|++|++.|.++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~ 80 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS 80 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence 5679999999999999999999999999999999999963 247988999999999999999999999999999999999
Q ss_pred EEEEEEceeEeeceeEEEEeeecccccccccccceecccccccccCCCCchhhhhhhcCCCCCCeEEEEeccCCCCCCCc
Q 013993 162 QDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGG 241 (432)
Q Consensus 162 ~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~fs~~l~~~~~~~~~G 241 (432)
+|+|++|+..++++.||+++...+..|....++||||||++..+.....|++++|++||.|.+++||+||+++.+...+|
T Consensus 81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G 160 (325)
T cd05490 81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG 160 (325)
T ss_pred eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence 99999999999999999998776544555678999999999888777889999999999999999999998754333479
Q ss_pred EEEECccCCCCCccceEEEecCCCCcceEEeceEEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHHHHHhCCc----
Q 013993 242 EIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS---- 317 (432)
Q Consensus 242 ~l~fGg~D~s~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i~~~i~a~---- 317 (432)
+|+|||+|+++|.|++.|+|+.+..||.|.+++|.|++... .+.....|||||||+++++|.+++++|.+++++.
T Consensus 161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~~~~~ 239 (325)
T cd05490 161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAVPLIQ 239 (325)
T ss_pred EEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCHHHHHHHHHHhCCccccC
Confidence 99999999999999999999998899999999999987643 3445679999999999999999999999999764
Q ss_pred ceeeecccc------ccccccceehhhhhhcc
Q 013993 318 GVISQECKT------LVDQYGKTILEMLIAET 343 (432)
Q Consensus 318 g~~~~~C~~------~v~~yg~~ii~~~~~~~ 343 (432)
+.|..+|.. +.+.||+..+.+...++
T Consensus 240 ~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y 271 (325)
T cd05490 240 GEYMIDCEKIPTLPVISFSLGGKVYPLTGEDY 271 (325)
T ss_pred CCEEecccccccCCCEEEEECCEEEEEChHHe
Confidence 678899984 45678888888777665
No 4
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=2.3e-49 Score=387.98 Aligned_cols=270 Identities=44% Similarity=0.784 Sum_probs=238.2
Q ss_pred eecccCCceEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEeccCeEEEE
Q 013993 80 ALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGF 159 (432)
Q Consensus 80 ~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G~ 159 (432)
||.|+.|.+|+++|+||||||++.|+|||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|++.|.
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G~ 80 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTGI 80 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEEE
Confidence 789999999999999999999999999999999999999996 4579889999999999999999999999999999999
Q ss_pred EEEEEEEEceeEeeceeEEEEeeecccccccccccceecccccccccCCCCchhhhhhhcCCCCCCeEEEEeccCCCCCC
Q 013993 160 FSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEE 239 (432)
Q Consensus 160 ~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~fs~~l~~~~~~~~ 239 (432)
+++|+|++|+..++++.||++....+..+.....+||||||++..+..+..|++++|++||+|++++||+||.+... .
T Consensus 81 ~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~--~ 158 (317)
T cd05478 81 LGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQ--Q 158 (317)
T ss_pred EeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCC--C
Confidence 99999999999999999999987655333334579999999998887778899999999999999999999998632 3
Q ss_pred CcEEEECccCCCCCccceEEEecCCCCcceEEeceEEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHHHHHhCCc--
Q 013993 240 GGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS-- 317 (432)
Q Consensus 240 ~G~l~fGg~D~s~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i~~~i~a~-- 317 (432)
+|+|+|||+|+++|.|+++|+|+....||.|.++++.||++.+. ...+..+||||||+++++|++++++|.+++++.
T Consensus 159 ~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~ 237 (317)
T cd05478 159 GSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQN 237 (317)
T ss_pred CeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCccc
Confidence 79999999999999999999999989999999999999998875 335678999999999999999999999999874
Q ss_pred --ceeeecccc------ccccccceehhhhhhccCccccccccccccc
Q 013993 318 --GVISQECKT------LVDQYGKTILEMLIAETQPQKICSQMGLCTF 357 (432)
Q Consensus 318 --g~~~~~C~~------~v~~yg~~ii~~~~~~~~p~~ic~~~glC~~ 357 (432)
+.|..+|+. +.++|++..+.++.+++.... .+.|..
T Consensus 238 ~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~----~~~C~~ 281 (317)
T cd05478 238 QNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD----QGSCTS 281 (317)
T ss_pred cCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC----CCEEeE
Confidence 678899984 456788888888776664321 466763
No 5
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=2.7e-49 Score=387.30 Aligned_cols=254 Identities=44% Similarity=0.823 Sum_probs=227.8
Q ss_pred EEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEeccCeEEEEEEEEEEEEc
Q 013993 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVG 168 (432)
Q Consensus 89 Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D~v~ig 168 (432)
|+++|+||||||+++|+|||||+++||++..|. ...|..|+.|++++|+||+..++.|.+.|++|++.|.+++|+|++|
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 79 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVE 79 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEEC
Confidence 899999999999999999999999999999996 4589999999999999999999999999999999999999999999
Q ss_pred eeEeeceeEEEEeeecccccccccccceecccccccccCCCCchhhhhhhcCCCCCCeEEEEeccCCCCCCCcEEEECcc
Q 013993 169 DLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGV 248 (432)
Q Consensus 169 ~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~fs~~l~~~~~~~~~G~l~fGg~ 248 (432)
+..+++|.||++....+..|....++||||||++..+.....|++++|++||+|+.++||+||+++++....|+|+|||+
T Consensus 80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~ 159 (316)
T cd05486 80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGF 159 (316)
T ss_pred CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEccc
Confidence 99999999999877665445556789999999998887778899999999999999999999997644445799999999
Q ss_pred CCCCCccceEEEecCCCCcceEEeceEEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHHHHHhCCc---ceeeeccc
Q 013993 249 DPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS---GVISQECK 325 (432)
Q Consensus 249 D~s~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i~~~i~a~---g~~~~~C~ 325 (432)
|+++|.|++.|+|+.+.+||.|.+++|.|+++.+. +..+..+||||||+++++|++++++|.+++++. +.|..+|.
T Consensus 160 d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~~~~~~~~~C~ 238 (316)
T cd05486 160 DTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGATATDGEYGVDCS 238 (316)
T ss_pred CHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCcccCCcEEEecc
Confidence 99999999999999999999999999999998764 345679999999999999999999999999875 66888998
Q ss_pred c------ccccccceehhhhhhccC
Q 013993 326 T------LVDQYGKTILEMLIAETQ 344 (432)
Q Consensus 326 ~------~v~~yg~~ii~~~~~~~~ 344 (432)
. +.+.|++..+++...++.
T Consensus 239 ~~~~~p~i~f~f~g~~~~l~~~~y~ 263 (316)
T cd05486 239 TLSLMPSVTFTINGIPYSLSPQAYT 263 (316)
T ss_pred ccccCCCEEEEECCEEEEeCHHHeE
Confidence 4 566788888887776653
No 6
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=7.9e-49 Score=385.60 Aligned_cols=262 Identities=45% Similarity=0.841 Sum_probs=232.6
Q ss_pred ecccCCceEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCC-CcccccCCcccCCCCCCceeCCceEEEEeccCeEEEE
Q 013993 81 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYF-SVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGF 159 (432)
Q Consensus 81 l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G~ 159 (432)
|.|+.|.+|+++|+||||||+++|+|||||+++||++..|.. ...|..|+.|+|++|+||+..++.|.+.|++|+++|.
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~ 80 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF 80 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence 568889999999999999999999999999999999999963 2479999999999999999999999999999999999
Q ss_pred EEEEEEEEceeEeeceeEEEEeeecccccccccccceecccccccccCCCCchhhhhhhcCCCCCCeEEEEeccCCCCCC
Q 013993 160 FSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEE 239 (432)
Q Consensus 160 ~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~fs~~l~~~~~~~~ 239 (432)
+++|+|++|+..+. +.||++.......|....++||||||++..+..+..|++++|++||.|++++||+||.+.++...
T Consensus 81 ~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~ 159 (326)
T cd05487 81 LSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSL 159 (326)
T ss_pred EeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCC
Confidence 99999999998885 88999887654445556789999999998877778899999999999999999999987643345
Q ss_pred CcEEEECccCCCCCccceEEEecCCCCcceEEeceEEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHHHHHhCCc--
Q 013993 240 GGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS-- 317 (432)
Q Consensus 240 ~G~l~fGg~D~s~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i~~~i~a~-- 317 (432)
.|+|+|||+|+++|.|+++|+|+.+.++|+|.|+++.|+++.+. +..+..++|||||+++++|.+++++|++++++.
T Consensus 160 ~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~ 238 (326)
T cd05487 160 GGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAKER 238 (326)
T ss_pred CcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCccc
Confidence 89999999999999999999999999999999999999998764 345678999999999999999999999999874
Q ss_pred -ceeeecccc------ccccccceehhhhhhccC
Q 013993 318 -GVISQECKT------LVDQYGKTILEMLIAETQ 344 (432)
Q Consensus 318 -g~~~~~C~~------~v~~yg~~ii~~~~~~~~ 344 (432)
+.|..+|+. +.++||+..+.+..+++.
T Consensus 239 ~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi 272 (326)
T cd05487 239 LGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYV 272 (326)
T ss_pred CCCEEEeccccCCCCCEEEEECCEEEEeCHHHhE
Confidence 678899995 456899988888777663
No 7
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2.1e-48 Score=382.83 Aligned_cols=263 Identities=54% Similarity=0.976 Sum_probs=234.4
Q ss_pred eeecccCCceEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCC-CcccccCCcccCCCCCCceeCCceEEEEeccCeEE
Q 013993 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYF-SVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAIS 157 (432)
Q Consensus 79 ~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~ 157 (432)
.||.|+.|.+|+++|+||||+|++.|++||||+++||++..|.. ...|..++.|+|++|+|++..++.|.+.|++|+++
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~ 81 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLS 81 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEE
Confidence 47899999999999999999999999999999999999999953 23688889999999999999999999999999999
Q ss_pred EEEEEEEEEEceeEeeceeEEEEeeecccccccccccceecccccccccCCCCchhhhhhhcCCCCCCeEEEEeccCCCC
Q 013993 158 GFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEG 237 (432)
Q Consensus 158 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~fs~~l~~~~~~ 237 (432)
|.+++|+|++|+..++++.||++....+..|.....+||||||++..+.....|++.+|++||+|++++||+||.+....
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 99999999999999999999999876554455567899999999988877788899999999999999999999876543
Q ss_pred CCCcEEEECccCCCCCccceEEEecCCCCcceEEeceEEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHHHHHhCCc
Q 013993 238 EEGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317 (432)
Q Consensus 238 ~~~G~l~fGg~D~s~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i~~~i~a~ 317 (432)
..+|+|+|||+|+++|.|+++|+|+.+.+||.|.++++.++++... ..+..+||||||+++++|++++++|.+++++.
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~--~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 239 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFC--SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK 239 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeec--CCCcEEEEccCCcceeCCHHHHHHHHHHhCCc
Confidence 4579999999999999999999999999999999999999997653 45678999999999999999999999999875
Q ss_pred ----ceeeecccc------ccccccceehhhhhhcc
Q 013993 318 ----GVISQECKT------LVDQYGKTILEMLIAET 343 (432)
Q Consensus 318 ----g~~~~~C~~------~v~~yg~~ii~~~~~~~ 343 (432)
+.|..+|.. +.++||+..+.+..+++
T Consensus 240 ~~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~y 275 (329)
T cd05485 240 PIIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDY 275 (329)
T ss_pred cccCCcEEEeccccccCCcEEEEECCEEeEEChHHe
Confidence 567889985 45578888777776665
No 8
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=2.6e-48 Score=380.95 Aligned_cols=270 Identities=46% Similarity=0.846 Sum_probs=237.8
Q ss_pred eeecccCCceEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEeccCeEEE
Q 013993 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISG 158 (432)
Q Consensus 79 ~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G 158 (432)
+||.|+.|.+|+++|+||||+|++.|+|||||+++||++..|. +..|..++.|++++|+|++..++.+.+.|++|+++|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G 79 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEG 79 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEE
Confidence 5889999999999999999999999999999999999999996 458998899999999999999999999999999999
Q ss_pred EEEEEEEEEceeEeeceeEEEEeeecccccccccccceecccccccccCCCCchhhhhhhcCCCCCCeEEEEeccCCCCC
Q 013993 159 FFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGE 238 (432)
Q Consensus 159 ~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~fs~~l~~~~~~~ 238 (432)
.+++|++++++..++++.|+++....+..+.....+||||||++..+..+..|.+.+|++||.|.+++||+||++.. .
T Consensus 80 ~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~ 157 (320)
T cd05488 80 FVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--E 157 (320)
T ss_pred EEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--C
Confidence 99999999999999999999998766554555678999999999888777778889999999999999999999863 2
Q ss_pred CCcEEEECccCCCCCccceEEEecCCCCcceEEeceEEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHHHHHhCCc-
Q 013993 239 EGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS- 317 (432)
Q Consensus 239 ~~G~l~fGg~D~s~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i~~~i~a~- 317 (432)
.+|+|+|||+|+++|.|+++|+|+....||.|.+++|.||++.+.. .+..++|||||+++++|++++++|.+++++.
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~--~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~ 235 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELEL--ENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK 235 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEecc--CCCeEEEcCCcccccCCHHHHHHHHHHhCCcc
Confidence 3799999999999999999999999889999999999999987653 3568999999999999999999999999874
Q ss_pred ---ceeeecccc------ccccccceehhhhhhccCccccccccccccc
Q 013993 318 ---GVISQECKT------LVDQYGKTILEMLIAETQPQKICSQMGLCTF 357 (432)
Q Consensus 318 ---g~~~~~C~~------~v~~yg~~ii~~~~~~~~p~~ic~~~glC~~ 357 (432)
+.|..+|.. +.+.|++..+.++..++.- ...+.|..
T Consensus 236 ~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~----~~~g~C~~ 280 (320)
T cd05488 236 SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTL----EVSGSCIS 280 (320)
T ss_pred ccCCcEEeeccccccCCCEEEEECCEEEEECHHHhee----cCCCeEEE
Confidence 667889984 5567888877777666532 12356763
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=4.5e-48 Score=379.10 Aligned_cols=256 Identities=44% Similarity=0.836 Sum_probs=229.7
Q ss_pred CceEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEeccCeEEEEEEEEEE
Q 013993 86 DAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNV 165 (432)
Q Consensus 86 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D~v 165 (432)
|.+|+++|+||||||++.|++||||+++||++..|. ...|..++.|+|++|+||+..++.|.+.|++|++.|.+++|+|
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i 79 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTV 79 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEE
Confidence 568999999999999999999999999999999997 4579999999999999999999999999999999999999999
Q ss_pred EEceeEeeceeEEEEeeecccccccccccceecccccccccCCCCchhhhhhhcCCCCCCeEEEEeccCCCCCCCcEEEE
Q 013993 166 KVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVF 245 (432)
Q Consensus 166 ~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~fs~~l~~~~~~~~~G~l~f 245 (432)
++|+..+++|.||++....+..+.....+||||||++..+.....+++++|+++|.|++++||+||++.. ...+|+|+|
T Consensus 80 ~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~f 158 (318)
T cd05477 80 TVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVF 158 (318)
T ss_pred EECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEE
Confidence 9999999999999998765544545567999999999888777889999999999999999999998753 223799999
Q ss_pred CccCCCCCccceEEEecCCCCcceEEeceEEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHHHHHhCCc----ceee
Q 013993 246 GGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS----GVIS 321 (432)
Q Consensus 246 Gg~D~s~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i~~~i~a~----g~~~ 321 (432)
||+|+++|.|+++|+|+....+|.|.++++.|+++....+..+..+||||||+++++|++++++|++.+++. +.|.
T Consensus 159 Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~ 238 (318)
T cd05477 159 GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQYGQYV 238 (318)
T ss_pred cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCccccCCCEE
Confidence 999999999999999999999999999999999988766666778999999999999999999999999875 6788
Q ss_pred ecccc------ccccccceehhhhhhcc
Q 013993 322 QECKT------LVDQYGKTILEMLIAET 343 (432)
Q Consensus 322 ~~C~~------~v~~yg~~ii~~~~~~~ 343 (432)
.+|.. +.+.|++..+.++..++
T Consensus 239 ~~C~~~~~~p~l~~~f~g~~~~v~~~~y 266 (318)
T cd05477 239 VNCNNIQNLPTLTFTINGVSFPLPPSAY 266 (318)
T ss_pred EeCCccccCCcEEEEECCEEEEECHHHe
Confidence 99985 45678888777776655
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=6.6e-48 Score=389.93 Aligned_cols=261 Identities=33% Similarity=0.627 Sum_probs=226.7
Q ss_pred CCCceeeecccCCceEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEecc
Q 013993 74 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGT 153 (432)
Q Consensus 74 ~~~~~~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~ 153 (432)
+....+||.|+.|.+|+++|+||||||+|.|+|||||+++||++..|. ...|..++.||+++|+||+..++.|.+.|++
T Consensus 125 ~~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~ 203 (453)
T PTZ00147 125 SEFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMNYVS 203 (453)
T ss_pred CCCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEEeCC
Confidence 356789999999999999999999999999999999999999999996 5689999999999999999999999999999
Q ss_pred CeEEEEEEEEEEEEceeEeeceeEEEEeeeccc--ccccccccceecccccccccCCCCchhhhhhhcCCCCCCeEEEEe
Q 013993 154 GAISGFFSQDNVKVGDLVVKNQDFIEATKEASI--TFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWL 231 (432)
Q Consensus 154 gs~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~--~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~fs~~l 231 (432)
|+++|.+++|+|++|+.+++ +.|+++.+..+. .+....++||||||++..+.....|++.+|++||.|++++||+||
T Consensus 204 GsvsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L 282 (453)
T PTZ00147 204 GTVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYL 282 (453)
T ss_pred CCEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEe
Confidence 99999999999999999998 568877765432 133456899999999988877788999999999999999999999
Q ss_pred ccCCCCCCCcEEEECccCCCCCccceEEEecCCCCcceEEeceEEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHHH
Q 013993 232 NRDIEGEEGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQIN 311 (432)
Q Consensus 232 ~~~~~~~~~G~l~fGg~D~s~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i~ 311 (432)
.+.. ..+|+|+|||+|+++|.|++.|+|+.+..||+|.++ +.+++.. .....||+||||+++++|++++++|+
T Consensus 283 ~~~~--~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~----~~~~~aIiDSGTsli~lP~~~~~ai~ 355 (453)
T PTZ00147 283 PPED--KHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVS----SEKANVIVDSGTSVITVPTEFLNKFV 355 (453)
T ss_pred cCCC--CCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEe----cCceeEEECCCCchhcCCHHHHHHHH
Confidence 8653 237999999999999999999999998899999998 4776643 24678999999999999999999999
Q ss_pred HHhCCc-----ceeeecccc-----ccccccceehhhhhhcc
Q 013993 312 HAIGAS-----GVISQECKT-----LVDQYGKTILEMLIAET 343 (432)
Q Consensus 312 ~~i~a~-----g~~~~~C~~-----~v~~yg~~ii~~~~~~~ 343 (432)
+++++. +.+..+|.. +.+.+++..+.+.+.++
T Consensus 356 ~~l~~~~~~~~~~y~~~C~~~~lP~~~f~f~g~~~~L~p~~y 397 (453)
T PTZ00147 356 ESLDVFKVPFLPLYVTTCNNTKLPTLEFRSPNKVYTLEPEYY 397 (453)
T ss_pred HHhCCeecCCCCeEEEeCCCCCCCeEEEEECCEEEEECHHHh
Confidence 999764 456789984 45567777776666555
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.4e-46 Score=379.54 Aligned_cols=261 Identities=32% Similarity=0.647 Sum_probs=223.8
Q ss_pred CCCceeeecccCCceEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEecc
Q 013993 74 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGT 153 (432)
Q Consensus 74 ~~~~~~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~ 153 (432)
+....+||.|+.+.+|+++|+||||||+|.|+|||||+++||++..|. ...|..++.|++++|+|++..++.+.+.|++
T Consensus 124 ~~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~ 202 (450)
T PTZ00013 124 SENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVDITYGS 202 (450)
T ss_pred cCCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEEEEECC
Confidence 356779999999999999999999999999999999999999999996 4689999999999999999999999999999
Q ss_pred CeEEEEEEEEEEEEceeEeeceeEEEEeeecc--cccccccccceecccccccccCCCCchhhhhhhcCCCCCCeEEEEe
Q 013993 154 GAISGFFSQDNVKVGDLVVKNQDFIEATKEAS--ITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWL 231 (432)
Q Consensus 154 gs~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~--~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~fs~~l 231 (432)
|++.|.+++|+|++|+.+++ +.|+++..... ..+....++||||||++..+.....|++++|++||+|++++||+||
T Consensus 203 Gsv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L 281 (450)
T PTZ00013 203 GTVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYL 281 (450)
T ss_pred ceEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEe
Confidence 99999999999999999987 56777765432 1234456899999999988877788999999999999999999999
Q ss_pred ccCCCCCCCcEEEECccCCCCCccceEEEecCCCCcceEEeceEEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHHH
Q 013993 232 NRDIEGEEGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQIN 311 (432)
Q Consensus 232 ~~~~~~~~~G~l~fGg~D~s~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i~ 311 (432)
++.. ..+|+|+|||+|+++|.|+++|+|+.+..||+|.++ +.++.... ....||+||||+++++|++++++++
T Consensus 282 ~~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~~i~ 354 (450)
T PTZ00013 282 PVHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLNKFF 354 (450)
T ss_pred cCCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHHHHH
Confidence 8653 237999999999999999999999998899999998 66654332 3568999999999999999999999
Q ss_pred HHhCCc-----ceeeecccc-----ccccccceehhhhhhcc
Q 013993 312 HAIGAS-----GVISQECKT-----LVDQYGKTILEMLIAET 343 (432)
Q Consensus 312 ~~i~a~-----g~~~~~C~~-----~v~~yg~~ii~~~~~~~ 343 (432)
+++++. +.|..+|.. +.+.+++..+.+...++
T Consensus 355 ~~l~~~~~~~~~~y~~~C~~~~lP~i~F~~~g~~~~L~p~~Y 396 (450)
T PTZ00013 355 ANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYY 396 (450)
T ss_pred HHhCCeecCCCCeEEeecCCCCCCeEEEEECCEEEEECHHHh
Confidence 999764 567789973 45567776666655443
No 12
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=8.2e-44 Score=342.42 Aligned_cols=230 Identities=36% Similarity=0.545 Sum_probs=201.2
Q ss_pred EEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCcee-CCceEEEEeccCe-EEEEEEEEEEE
Q 013993 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKR-NGTSAAIQYGTGA-ISGFFSQDNVK 166 (432)
Q Consensus 89 Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~-~~~~~~~~Y~~gs-~~G~~~~D~v~ 166 (432)
|+++|+||||||++.|+|||||+++||+++.|. ...|..++.|+++.|+|++. .++.+.+.|++|+ +.|.+++|+|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ 79 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVS 79 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEE
Confidence 799999999999999999999999999999996 33556677899999999987 4689999999997 89999999999
Q ss_pred EceeEeeceeEEEEeeecccccccccccceecccccccccC---CCCchhhhhhhcCCCCCCeEEEEeccCCCCCCCcEE
Q 013993 167 VGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIG---KAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEI 243 (432)
Q Consensus 167 ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~---~~~p~~~~l~~qg~i~~~~fs~~l~~~~~~~~~G~l 243 (432)
+|+..++++.||+++...+..+....++||||||++..+.. ...+++++|.+|+. +++||+||.+. ..|+|
T Consensus 80 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l 153 (278)
T cd06097 80 IGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFY 153 (278)
T ss_pred ECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEE
Confidence 99999999999999877654455567899999999877542 35678999999865 79999999863 27999
Q ss_pred EECccCCCCCccceEEEecCC-CCcceEEeceEEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHHHHHh-CCc----
Q 013993 244 VFGGVDPDHYKGEHTYVPVTK-KGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAI-GAS---- 317 (432)
Q Consensus 244 ~fGg~D~s~~~g~l~~~pv~~-~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i~~~i-~a~---- 317 (432)
+|||+|+++|.|+++|+|+.+ ..||.|.+++|.|+++... ...+..++|||||+++++|++++++|++++ ++.
T Consensus 154 ~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~~~~~ 232 (278)
T cd06097 154 TFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVPGAYYDSE 232 (278)
T ss_pred EEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCcCCcccCC
Confidence 999999999999999999987 7899999999999987433 346789999999999999999999999999 443
Q ss_pred -ceeeecccc
Q 013993 318 -GVISQECKT 326 (432)
Q Consensus 318 -g~~~~~C~~ 326 (432)
+.|..+|+.
T Consensus 233 ~~~~~~~C~~ 242 (278)
T cd06097 233 YGGWVFPCDT 242 (278)
T ss_pred CCEEEEECCC
Confidence 678899995
No 13
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.1e-43 Score=345.41 Aligned_cols=267 Identities=37% Similarity=0.660 Sum_probs=231.0
Q ss_pred eEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEeccCeEEEEEEEEEEEE
Q 013993 88 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKV 167 (432)
Q Consensus 88 ~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D~v~i 167 (432)
+|+++|+||||||+++|++||||+++||++..|..+..|..+..|+++.|+|++..+..+.+.|++|+++|.++.|+|++
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~i 80 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSI 80 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEee
Confidence 69999999999999999999999999999999973336788899999999999999999999999999999999999999
Q ss_pred ceeEeeceeEEEEeeecccccccccccceecccccccccCC-CCchhhhhhhcCCCCCCeEEEEeccCCCCCCCcEEEEC
Q 013993 168 GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGK-AIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFG 246 (432)
Q Consensus 168 g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~-~~p~~~~l~~qg~i~~~~fs~~l~~~~~~~~~G~l~fG 246 (432)
++..++++.|+.+....+..+....++||||||++..+... ..+++++|+++|+|++++||+||++.. ...|+|+||
T Consensus 81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~G 158 (317)
T PF00026_consen 81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFG 158 (317)
T ss_dssp TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEES
T ss_pred eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheee
Confidence 99999999999999866555667788999999998776654 778999999999999999999999875 347999999
Q ss_pred ccCCCCCccceEEEecCCCCcceEEeceEEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHHHHHhCCc---ceeeec
Q 013993 247 GVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS---GVISQE 323 (432)
Q Consensus 247 g~D~s~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i~~~i~a~---g~~~~~ 323 (432)
|+|+++|.|++.|+|+....+|.+.+++|.+++... ....+..++||||++++++|.+++++|++++++. +.|..+
T Consensus 159 g~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~ 237 (317)
T PF00026_consen 159 GYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSDGVYSVP 237 (317)
T ss_dssp SEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEECSEEEEE
T ss_pred ccccccccCceeccCccccccccccccccccccccc-ccccceeeecccccccccccchhhHHHHhhhcccccceeEEEe
Confidence 999999999999999999999999999999999832 2345678999999999999999999999999886 778999
Q ss_pred cccc------cccccceehhhhhhccCccccccccccccc
Q 013993 324 CKTL------VDQYGKTILEMLIAETQPQKICSQMGLCTF 357 (432)
Q Consensus 324 C~~~------v~~yg~~ii~~~~~~~~p~~ic~~~glC~~ 357 (432)
|+.. .+.+++..+.++..++.....-...+.|..
T Consensus 238 c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~ 277 (317)
T PF00026_consen 238 CNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYL 277 (317)
T ss_dssp TTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEE
T ss_pred cccccccceEEEeeCCEEEEecchHhcccccccccceeEe
Confidence 9965 568888888888877643332223336764
No 14
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-41 Score=337.05 Aligned_cols=241 Identities=42% Similarity=0.753 Sum_probs=202.4
Q ss_pred ceeeecccCCceEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCccccc-CCc-ccCCCCCCceeCCce--------
Q 013993 77 DIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYF-HSK-YKSSHSSTYKRNGTS-------- 146 (432)
Q Consensus 77 ~~~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~-~~~-y~~~~SsT~~~~~~~-------- 146 (432)
...++..+.+.+|+++|+||||||+|.|+|||||+++||+|..|.. .|.. +.. |+|++|+||+..++.
T Consensus 35 ~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~ 112 (398)
T KOG1339|consen 35 LPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLP 112 (398)
T ss_pred cccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCccccccc
Confidence 3456777778899999999999999999999999999999999952 7875 555 999999999987743
Q ss_pred ----------EEEEeccC-eEEEEEEEEEEEEce---eEeeceeEEEEeeeccccccc-ccccceecccccccccCCCCc
Q 013993 147 ----------AAIQYGTG-AISGFFSQDNVKVGD---LVVKNQDFIEATKEASITFLA-AKFDGILGLGFQEISIGKAIP 211 (432)
Q Consensus 147 ----------~~~~Y~~g-s~~G~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~-~~~~GilGLg~~~~s~~~~~p 211 (432)
|.+.|++| +++|.+++|+|++++ ..++++.||++....+. +.. .+++||||||+..++.....+
T Consensus 113 ~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~ 191 (398)
T KOG1339|consen 113 QSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQLP 191 (398)
T ss_pred cCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeecc
Confidence 99999995 589999999999998 78888999999988765 444 678999999999998665554
Q ss_pred hhhhhhhcCCCCCCeEEEEeccCCCCC-CCcEEEECccCCCCCccceEEEecCCCC--cceEEeceEEECCee----eee
Q 013993 212 VWYNMLDQGLVKEPVFSFWLNRDIEGE-EGGEIVFGGVDPDHYKGEHTYVPVTKKG--YWQFEMGDVLIDGET----TGY 284 (432)
Q Consensus 212 ~~~~l~~qg~i~~~~fs~~l~~~~~~~-~~G~l~fGg~D~s~~~g~l~~~pv~~~~--~w~v~l~~i~v~~~~----~~~ 284 (432)
.+..+. ++||+||.+...+. .+|.|+||++|++++.|+++|+|+.... ||+|.+++|.|+++. ..+
T Consensus 192 ~~~~~~-------~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~ 264 (398)
T KOG1339|consen 192 SFYNAI-------NVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLF 264 (398)
T ss_pred cccCCc-------eeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceE
Confidence 443332 28999999875332 4899999999999999999999998877 999999999999843 333
Q ss_pred cCCCceEEEcCCCcCcccCHHHHHHHHHHhCCc-------ceeeeccccc
Q 013993 285 CSTGCNAIADSGTSLLAGPTTIITQINHAIGAS-------GVISQECKTL 327 (432)
Q Consensus 285 ~~~~~~aiiDTGts~~~lP~~~~~~i~~~i~a~-------g~~~~~C~~~ 327 (432)
+...+.+|+||||+++++|.+++++|.++|++. +.+...|-..
T Consensus 265 ~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~~~~~~~~~~~C~~~ 314 (398)
T KOG1339|consen 265 CTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSVVGTDGEYFVPCFSI 314 (398)
T ss_pred ecCCCCEEEECCcceeeccHHHHHHHHHHHHhheeccccCCceeeecccC
Confidence 334689999999999999999999999999973 4455688853
No 15
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=3.3e-40 Score=329.14 Aligned_cols=223 Identities=29% Similarity=0.485 Sum_probs=184.7
Q ss_pred ceEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEeccCeEEEEEEEEEEE
Q 013993 87 AQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVK 166 (432)
Q Consensus 87 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D~v~ 166 (432)
..|+++|+||||||+|.|+|||||+++||++..| |..++.|++++|+||+..++.|++.|++|+++|.+++|+|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~-----~~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ 76 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPH-----PFIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS 76 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCC-----ccccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence 4699999999999999999999999999999876 33467999999999999999999999999999999999999
Q ss_pred EceeEeecee----EEEEeeecccccccccccceecccccccccC--CCCchhhhhhhcCCCCCCeEEEEeccCC-----
Q 013993 167 VGDLVVKNQD----FIEATKEASITFLAAKFDGILGLGFQEISIG--KAIPVWYNMLDQGLVKEPVFSFWLNRDI----- 235 (432)
Q Consensus 167 ig~~~~~~~~----fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~--~~~p~~~~l~~qg~i~~~~fs~~l~~~~----- 235 (432)
||+. .++. |+++....+..+....++||||||++.++.. ...|++++|++|+.+ .++||+||+...
T Consensus 77 ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~ 153 (364)
T cd05473 77 IPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNG 153 (364)
T ss_pred ECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccc
Confidence 9863 2333 3444333222122235799999999987642 457899999999987 579999996421
Q ss_pred --CCCCCcEEEECccCCCCCccceEEEecCCCCcceEEeceEEECCeeeeecCC---CceEEEcCCCcCcccCHHHHHHH
Q 013993 236 --EGEEGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCST---GCNAIADSGTSLLAGPTTIITQI 310 (432)
Q Consensus 236 --~~~~~G~l~fGg~D~s~~~g~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~---~~~aiiDTGts~~~lP~~~~~~i 310 (432)
....+|+|+|||+|+++|.|++.|+|+.+..||.|.+++|.|+++.+..... ...+||||||+++++|.+++++|
T Consensus 154 ~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l 233 (364)
T cd05473 154 SASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAA 233 (364)
T ss_pred ccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHH
Confidence 1234799999999999999999999999889999999999999987754221 24699999999999999999999
Q ss_pred HHHhCCc
Q 013993 311 NHAIGAS 317 (432)
Q Consensus 311 ~~~i~a~ 317 (432)
.+++++.
T Consensus 234 ~~~l~~~ 240 (364)
T cd05473 234 VDAIKAA 240 (364)
T ss_pred HHHHHhh
Confidence 9999753
No 16
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.1e-38 Score=306.91 Aligned_cols=227 Identities=48% Similarity=0.868 Sum_probs=199.7
Q ss_pred EEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCc--ccCCCCCCceeCCceEEEEeccCeEEEEEEEEEEE
Q 013993 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSK--YKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVK 166 (432)
Q Consensus 89 Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~--y~~~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D~v~ 166 (432)
|+++|.||+|+|++.|++||||+++||++..|. ...|..+.. |++..|+++....+.+.+.|++|++.|.++.|+|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~ 79 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT-SCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVT 79 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC-ccccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEE
Confidence 789999999999999999999999999999996 223333333 89999999999999999999999999999999999
Q ss_pred EceeEeeceeEEEEeeecccccccccccceecccccccccCCCCchhhhhhhcCCCCCCeEEEEeccCCCCCCCcEEEEC
Q 013993 167 VGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFG 246 (432)
Q Consensus 167 ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~fs~~l~~~~~~~~~G~l~fG 246 (432)
+++..++++.||++..... .+.....+||||||++..+.....+++++|.+++.|.+++||+||.+.......|.|+||
T Consensus 80 ~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~G 158 (283)
T cd05471 80 IGGLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFG 158 (283)
T ss_pred ECCEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEc
Confidence 9999999999999997754 344567899999999987766678899999999999999999999985322348999999
Q ss_pred ccCCCCCccceEEEecCC--CCcceEEeceEEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHHHHHhCCc
Q 013993 247 GVDPDHYKGEHTYVPVTK--KGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317 (432)
Q Consensus 247 g~D~s~~~g~l~~~pv~~--~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i~~~i~a~ 317 (432)
|+|++++.|++.|+|+.. ..+|.|.+++|.|++...........++|||||+++++|.+++++|++++++.
T Consensus 159 g~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~ 231 (283)
T cd05471 159 GIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAA 231 (283)
T ss_pred ccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCc
Confidence 999999999999999988 78999999999999874222356789999999999999999999999999875
No 17
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.8e-39 Score=319.18 Aligned_cols=236 Identities=28% Similarity=0.428 Sum_probs=193.9
Q ss_pred ceEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccc--cCCcccCCCCCCceeC----------------CceEE
Q 013993 87 AQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCY--FHSKYKSSHSSTYKRN----------------GTSAA 148 (432)
Q Consensus 87 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~--~~~~y~~~~SsT~~~~----------------~~~~~ 148 (432)
.+|+++|+||||||++.|+|||||+++||++..|. .|. .++.|+|++|+|++.. .+.|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence 47999999999999999999999999999999996 454 4578999999999863 56999
Q ss_pred EEeccCe-EEEEEEEEEEEEceeEee-------ceeEEEEeeecccccccccccceecccccccccCCCCchhhhhhhcC
Q 013993 149 IQYGTGA-ISGFFSQDNVKVGDLVVK-------NQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQG 220 (432)
Q Consensus 149 ~~Y~~gs-~~G~~~~D~v~ig~~~~~-------~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg 220 (432)
+.|++|+ +.|.+++|+|+||+..++ ++.||++....+ .|.....+||||||+...+. ..+....|++++
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKR 155 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhc
Confidence 9999997 789999999999986653 467998877654 34456789999999987542 223344477777
Q ss_pred CCCC--CeEEEEeccCCCCCCCcEEEECccCCCCCc----------cceEEEecCCCCcceEEeceEEECCee-eeecCC
Q 013993 221 LVKE--PVFSFWLNRDIEGEEGGEIVFGGVDPDHYK----------GEHTYVPVTKKGYWQFEMGDVLIDGET-TGYCST 287 (432)
Q Consensus 221 ~i~~--~~fs~~l~~~~~~~~~G~l~fGg~D~s~~~----------g~l~~~pv~~~~~w~v~l~~i~v~~~~-~~~~~~ 287 (432)
.+.. ++||+||++. +|.|+|||+|+++|. +++.|+|+.+..+|.|.+++|.|+++. ......
T Consensus 156 ~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~ 230 (326)
T cd06096 156 PKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTK 230 (326)
T ss_pred ccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceeccc
Confidence 6654 9999999864 799999999999997 899999999889999999999999875 112345
Q ss_pred CceEEEcCCCcCcccCHHHHHHHHHHhCCcceeeecccccccccc-ceehhhhhhcc
Q 013993 288 GCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYG-KTILEMLIAET 343 (432)
Q Consensus 288 ~~~aiiDTGts~~~lP~~~~~~i~~~i~a~g~~~~~C~~~v~~yg-~~ii~~~~~~~ 343 (432)
...+||||||+++++|++++++|.+++ -++.+.|+ +..+.+.+.++
T Consensus 231 ~~~aivDSGTs~~~lp~~~~~~l~~~~----------P~i~~~f~~g~~~~i~p~~y 277 (326)
T cd06096 231 GLGMLVDSGSTLSHFPEDLYNKINNFF----------PTITIIFENNLKIDWKPSSY 277 (326)
T ss_pred CCCEEEeCCCCcccCCHHHHHHHHhhc----------CcEEEEEcCCcEEEECHHHh
Confidence 778999999999999999999999998 34666776 56666655554
No 18
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=315.81 Aligned_cols=214 Identities=24% Similarity=0.418 Sum_probs=172.7
Q ss_pred CCceEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccc--cCCcccCCCCCCceeCC------------------
Q 013993 85 MDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCY--FHSKYKSSHSSTYKRNG------------------ 144 (432)
Q Consensus 85 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~--~~~~y~~~~SsT~~~~~------------------ 144 (432)
.+.+|+++|+||||||++.|+|||||+++||+|.+|. .|. .++.|||++|+||+...
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence 4678999999999999999999999999999999985 676 45789999999998742
Q ss_pred --ceEEEEeccCe-EEEEEEEEEEEEce-----eEeeceeEEEEeeecccccccccccceecccccccccCCCCchhhhh
Q 013993 145 --TSAAIQYGTGA-ISGFFSQDNVKVGD-----LVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNM 216 (432)
Q Consensus 145 --~~~~~~Y~~gs-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l 216 (432)
+.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||+....+. |. ...+||||||+...+ ++.+|
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~-f~-~~~~GilGLG~~~~S------l~sql 229 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT-FD-EKGSGIVGLGGGPLS------LISQL 229 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC-cc-CCCceeEecCCCCcc------HHHHh
Confidence 78999999998 57999999999987 46899999999876542 32 257999999998776 44455
Q ss_pred hhcCCCCCCeEEEEeccCCC-CCCCcEEEECccCCCCCcc-ceEEEecCC---CCcceEEeceEEECCeeeeecC-----
Q 013993 217 LDQGLVKEPVFSFWLNRDIE-GEEGGEIVFGGVDPDHYKG-EHTYVPVTK---KGYWQFEMGDVLIDGETTGYCS----- 286 (432)
Q Consensus 217 ~~qg~i~~~~fs~~l~~~~~-~~~~G~l~fGg~D~s~~~g-~l~~~pv~~---~~~w~v~l~~i~v~~~~~~~~~----- 286 (432)
..+ +. ++||+||.+..+ ....|.|+||+. .++.| .+.|+|+.. ..||.|.|++|+||++.+.+..
T Consensus 230 ~~~--~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~ 304 (431)
T PLN03146 230 GSS--IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNG 304 (431)
T ss_pred hHh--hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCcccccc
Confidence 432 43 599999975322 234799999984 55554 488999964 4799999999999998775432
Q ss_pred -CCceEEEcCCCcCcccCHHHHHHHHHHh
Q 013993 287 -TGCNAIADSGTSLLAGPTTIITQINHAI 314 (432)
Q Consensus 287 -~~~~aiiDTGts~~~lP~~~~~~i~~~i 314 (432)
+...+||||||+++++|+++++++.+++
T Consensus 305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~ 333 (431)
T PLN03146 305 VEEGNIIIDSGTTLTLLPSDFYSELESAV 333 (431)
T ss_pred CCCCcEEEeCCccceecCHHHHHHHHHHH
Confidence 2347999999999999999888876654
No 19
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=5.5e-37 Score=297.42 Aligned_cols=218 Identities=32% Similarity=0.575 Sum_probs=189.2
Q ss_pred eEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEeccC-eEEEEEEEEEEE
Q 013993 88 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTG-AISGFFSQDNVK 166 (432)
Q Consensus 88 ~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~g-s~~G~~~~D~v~ 166 (432)
.|+++|+||||||++.|+|||||+++||+ +|.+.|++| ++.|.+++|+|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~ 52 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVS 52 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEE
Confidence 69999999999999999999999999996 688999995 689999999999
Q ss_pred EceeEeeceeEEEEeeecccccccccccceeccccccccc-----CCCCchhhhhhhcCCCCCCeEEEEeccCCCCCCCc
Q 013993 167 VGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI-----GKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGG 241 (432)
Q Consensus 167 ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~-----~~~~p~~~~l~~qg~i~~~~fs~~l~~~~~~~~~G 241 (432)
+++..++++.||+++.. ...+||||||++..+. ...++++++|++||+|++++||+||.+.+ ...|
T Consensus 53 ~g~~~~~~~~fg~~~~~-------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g 123 (295)
T cd05474 53 IGGATVKNLQFAVANST-------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTG 123 (295)
T ss_pred ECCeEecceEEEEEecC-------CCCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCce
Confidence 99999999999999863 2358999999988743 23457899999999999999999998753 2379
Q ss_pred EEEECccCCCCCccceEEEecCCC------CcceEEeceEEECCeeee--ecCCCceEEEcCCCcCcccCHHHHHHHHHH
Q 013993 242 EIVFGGVDPDHYKGEHTYVPVTKK------GYWQFEMGDVLIDGETTG--YCSTGCNAIADSGTSLLAGPTTIITQINHA 313 (432)
Q Consensus 242 ~l~fGg~D~s~~~g~l~~~pv~~~------~~w~v~l~~i~v~~~~~~--~~~~~~~aiiDTGts~~~lP~~~~~~i~~~ 313 (432)
.|+|||+|+++|.|+++|+|+... .+|.|.+++|.+++.... .......++|||||+++++|.+++++|.++
T Consensus 124 ~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~ 203 (295)
T cd05474 124 SILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQ 203 (295)
T ss_pred eEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHH
Confidence 999999999999999999999765 789999999999988753 234567899999999999999999999999
Q ss_pred hCCc-----ceeeecccc-----ccccccceehhhhhhcc
Q 013993 314 IGAS-----GVISQECKT-----LVDQYGKTILEMLIAET 343 (432)
Q Consensus 314 i~a~-----g~~~~~C~~-----~v~~yg~~ii~~~~~~~ 343 (432)
+++. +.+..+|.. +.+.|++..+.++.+++
T Consensus 204 ~~~~~~~~~~~~~~~C~~~~~p~i~f~f~g~~~~i~~~~~ 243 (295)
T cd05474 204 LGATYDSDEGLYVVDCDAKDDGSLTFNFGGATISVPLSDL 243 (295)
T ss_pred hCCEEcCCCcEEEEeCCCCCCCEEEEEECCeEEEEEHHHh
Confidence 9875 678899984 55678887777776665
No 20
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=4.8e-37 Score=298.50 Aligned_cols=217 Identities=24% Similarity=0.398 Sum_probs=173.8
Q ss_pred eEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEeccCe-EEEEEEEEEEE
Q 013993 88 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA-ISGFFSQDNVK 166 (432)
Q Consensus 88 ~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs-~~G~~~~D~v~ 166 (432)
+|+++|.||||||++.|+|||||+++||+|..| +.|.+.|++|+ ++|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------~~~~i~Yg~Gs~~~G~~~~D~v~ 56 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------CLYQVSYGDGSYTTGDLATDTLT 56 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------CeeeeEeCCCceEEEEEEEEEEE
Confidence 599999999999999999999999999976544 67999999998 58999999999
Q ss_pred Ecee-EeeceeEEEEeeecccccccccccceecccccccccCCCCchhhhhhhcCCCCCCeEEEEeccCCCCCCCcEEEE
Q 013993 167 VGDL-VVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVF 245 (432)
Q Consensus 167 ig~~-~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~fs~~l~~~~~~~~~G~l~f 245 (432)
||+. .++++.||++....+. + ...+||||||++..+ +..+|..+ .+++||+||.+.. ...+|+|+|
T Consensus 57 ig~~~~~~~~~Fg~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~f 123 (299)
T cd05472 57 LGSSDVVPGFAFGCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSF 123 (299)
T ss_pred eCCCCccCCEEEECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEe
Confidence 9998 8999999999876542 2 267999999998765 33444433 3589999998753 234899999
Q ss_pred CccCCCCCccceEEEecCCC----CcceEEeceEEECCeeeeec---CCCceEEEcCCCcCcccCHHHHHHHHHHhCCc-
Q 013993 246 GGVDPDHYKGEHTYVPVTKK----GYWQFEMGDVLIDGETTGYC---STGCNAIADSGTSLLAGPTTIITQINHAIGAS- 317 (432)
Q Consensus 246 Gg~D~s~~~g~l~~~pv~~~----~~w~v~l~~i~v~~~~~~~~---~~~~~aiiDTGts~~~lP~~~~~~i~~~i~a~- 317 (432)
||+|++ .|++.|+|+.+. .+|.|++++|.|+++.+... ..+..+||||||+++++|++++++|.+++++.
T Consensus 124 Gg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~ 201 (299)
T cd05472 124 GAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAM 201 (299)
T ss_pred CCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHh
Confidence 999998 999999999753 69999999999999887542 24568999999999999999999999988642
Q ss_pred -------ceeee-ccc-----------ccccccc-ceehhhhhhcc
Q 013993 318 -------GVISQ-ECK-----------TLVDQYG-KTILEMLIAET 343 (432)
Q Consensus 318 -------g~~~~-~C~-----------~~v~~yg-~~ii~~~~~~~ 343 (432)
+.+.. .|. .+.+.|+ +..+.+..+++
T Consensus 202 ~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y 247 (299)
T cd05472 202 AAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGV 247 (299)
T ss_pred ccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccE
Confidence 22233 384 2445675 56666655544
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.5e-35 Score=283.07 Aligned_cols=199 Identities=27% Similarity=0.397 Sum_probs=166.6
Q ss_pred eEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEeccC-eEEEEEEEEEEE
Q 013993 88 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTG-AISGFFSQDNVK 166 (432)
Q Consensus 88 ~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~g-s~~G~~~~D~v~ 166 (432)
+|+++|+||||||++.|+|||||+++||+| +.|.+.|++| .++|.+++|+|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------~~~~~~Y~dg~~~~G~~~~D~v~ 53 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------CSYEYSYGDGSSTSGVLATETFT 53 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------CceEeEeCCCceeeeeEEEEEEE
Confidence 599999999999999999999999999974 4688999977 479999999999
Q ss_pred Ecee--EeeceeEEEEeeecccccccccccceecccccccccCCCCchhhhhhhcCCCCCCeEEEEeccCCCCCCCcEEE
Q 013993 167 VGDL--VVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIV 244 (432)
Q Consensus 167 ig~~--~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~fs~~l~~~~~~~~~G~l~ 244 (432)
+++. .++++.||++....+ +....++||||||++..+ ++.+|..++ ++||+||.+..+....|+|+
T Consensus 54 ~g~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~ 121 (265)
T cd05476 54 FGDSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLI 121 (265)
T ss_pred ecCCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEE
Confidence 9998 899999999997764 456678999999997654 566777766 89999998753334589999
Q ss_pred ECccCCCCCccceEEEecCC----CCcceEEeceEEECCeeeee--------cCCCceEEEcCCCcCcccCHHHHHHHHH
Q 013993 245 FGGVDPDHYKGEHTYVPVTK----KGYWQFEMGDVLIDGETTGY--------CSTGCNAIADSGTSLLAGPTTIITQINH 312 (432)
Q Consensus 245 fGg~D~s~~~g~l~~~pv~~----~~~w~v~l~~i~v~~~~~~~--------~~~~~~aiiDTGts~~~lP~~~~~~i~~ 312 (432)
|||+|++ |.|++.|+|+.. ..+|.|++++|.|+++.+.+ ......+|+||||+++++|++++
T Consensus 122 fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~~----- 195 (265)
T cd05476 122 LGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY----- 195 (265)
T ss_pred ECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcccc-----
Confidence 9999999 999999999976 58999999999999987642 34577899999999999999887
Q ss_pred HhCCcceeeecccccccccc-ceehhhhhhcc
Q 013993 313 AIGASGVISQECKTLVDQYG-KTILEMLIAET 343 (432)
Q Consensus 313 ~i~a~g~~~~~C~~~v~~yg-~~ii~~~~~~~ 343 (432)
..+.+.|+ +..+.+...++
T Consensus 196 ------------P~i~~~f~~~~~~~i~~~~y 215 (265)
T cd05476 196 ------------PDLTLHFDGGADLELPPENY 215 (265)
T ss_pred ------------CCEEEEECCCCEEEeCcccE
Confidence 34566776 55565555443
No 22
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=7.5e-34 Score=272.39 Aligned_cols=186 Identities=25% Similarity=0.403 Sum_probs=156.1
Q ss_pred ceEEEEEEecCCCcEEEEEeecCCCceeeeCC-CCCCCcccccCCcccCCCCCCceeCCceEEEEeccC-eEEEEEEEEE
Q 013993 87 AQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSA-KCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTG-AISGFFSQDN 164 (432)
Q Consensus 87 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~-~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~g-s~~G~~~~D~ 164 (432)
.+|+++|.||||||++.|+|||||+++||+|. .|. .| .+.|.+.|++| ++.|.+++|+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c-----------------~c~~~i~Ygd~~~~~G~~~~D~ 60 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GC-----------------QCDYEIEYADGGSSMGVLVTDI 60 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC---CC-----------------cCccEeEeCCCCceEEEEEEEE
Confidence 36999999999999999999999999999974 563 45 46799999965 5899999999
Q ss_pred EEEce----eEeeceeEEEEeeecccc-cccccccceecccccccccCCCCchhhhhhhcCCCCCCeEEEEeccCCCCCC
Q 013993 165 VKVGD----LVVKNQDFIEATKEASIT-FLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEE 239 (432)
Q Consensus 165 v~ig~----~~~~~~~fg~~~~~~~~~-~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~fs~~l~~~~~~~~ 239 (432)
|+++. ..++++.||++....+.. +.....+||||||+...+ ++.+|.++++| +++||+||.+. .
T Consensus 61 v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~----~ 129 (273)
T cd05475 61 FSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGII-KNVIGHCLSSN----G 129 (273)
T ss_pred EEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCCc-CceEEEEccCC----C
Confidence 99963 577899999997654421 234567999999997654 78899999999 89999999863 2
Q ss_pred CcEEEECccCCCCCccceEEEecCCC---CcceEEeceEEECCeeeeecCCCceEEEcCCCcCcccCHHHH
Q 013993 240 GGEIVFGGVDPDHYKGEHTYVPVTKK---GYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTII 307 (432)
Q Consensus 240 ~G~l~fGg~D~s~~~g~l~~~pv~~~---~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~ 307 (432)
+|.|+|| |..++.|++.|+|+.+. .+|.|++.+|+||++... ..+..+||||||+++++|.+++
T Consensus 130 ~g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--~~~~~~ivDTGTt~t~lp~~~y 196 (273)
T cd05475 130 GGFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--GKGLEVVFDSGSSYTYFNAQAY 196 (273)
T ss_pred CeEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--CCCceEEEECCCceEEcCCccc
Confidence 6899998 56678899999999864 799999999999998543 4567899999999999999876
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=99.96 E-value=1.3e-28 Score=244.41 Aligned_cols=211 Identities=18% Similarity=0.224 Sum_probs=162.0
Q ss_pred ecCCCcE-EEEEeecCCCceeeeCCC----------CCCCcccccCCcccCCC-----CC-CceeCCceEEEE-eccCe-
Q 013993 95 IGTPSQT-FTVIFDTGSSNLWVPSAK----------CYFSVSCYFHSKYKSSH-----SS-TYKRNGTSAAIQ-YGTGA- 155 (432)
Q Consensus 95 iGtP~q~-~~v~~DTGSs~~WV~~~~----------C~~~~~C~~~~~y~~~~-----Ss-T~~~~~~~~~~~-Y~~gs- 155 (432)
+|||-.+ +.|++||||+++||+|.+ |. +..|..++.|++.+ ++ ......|.+... |++|+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~-s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~ 80 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCS-SSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGEC 80 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcC-ChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcE
Confidence 4778777 999999999999996654 53 55777677776542 22 222234666544 77885
Q ss_pred EEEEEEEEEEEEce--------eEeeceeEEEEeeecccccccccccceecccccccccCCCCchhhhhhhcCCCCCCeE
Q 013993 156 ISGFFSQDNVKVGD--------LVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVF 227 (432)
Q Consensus 156 ~~G~~~~D~v~ig~--------~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~f 227 (432)
..|.+++|+|+|+. ..++++.|||+.......+ ...++||||||++.++ +..+|..++. .+++|
T Consensus 81 t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~F 152 (362)
T cd05489 81 ATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKF 152 (362)
T ss_pred eeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcce
Confidence 68999999999973 3788999999986532222 3347999999999887 4445666554 46899
Q ss_pred EEEeccCCCCCCCcEEEECccCCCCCc------cceEEEecCCC----CcceEEeceEEECCeeeeec--------CCCc
Q 013993 228 SFWLNRDIEGEEGGEIVFGGVDPDHYK------GEHTYVPVTKK----GYWQFEMGDVLIDGETTGYC--------STGC 289 (432)
Q Consensus 228 s~~l~~~~~~~~~G~l~fGg~D~s~~~------g~l~~~pv~~~----~~w~v~l~~i~v~~~~~~~~--------~~~~ 289 (432)
|+||.+.. ..+|.|+||+.++.++. ++++|+|+... .||.|+|++|+||++.+.+. .+..
T Consensus 153 S~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~ 230 (362)
T cd05489 153 ALCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPG 230 (362)
T ss_pred EEEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCC
Confidence 99998753 23799999999988875 78999999753 79999999999999877542 2345
Q ss_pred eEEEcCCCcCcccCHHHHHHHHHHhCC
Q 013993 290 NAIADSGTSLLAGPTTIITQINHAIGA 316 (432)
Q Consensus 290 ~aiiDTGts~~~lP~~~~~~i~~~i~a 316 (432)
.+||||||++++||.+++++|.+++.+
T Consensus 231 g~iiDSGTs~t~lp~~~y~~l~~a~~~ 257 (362)
T cd05489 231 GVKLSTVVPYTVLRSDIYRAFTQAFAK 257 (362)
T ss_pred cEEEecCCceEEECHHHHHHHHHHHHH
Confidence 799999999999999999999988754
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.91 E-value=1.4e-23 Score=172.80 Aligned_cols=108 Identities=57% Similarity=0.887 Sum_probs=95.3
Q ss_pred EEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcc-cCCCCCCceeCCceEEEEeccCeEEEEEEEEEEEEce
Q 013993 91 GEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKY-KSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVGD 169 (432)
Q Consensus 91 ~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y-~~~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D~v~ig~ 169 (432)
++|.||||||++.|+|||||+++||++..|. ...|..++.| +++.|+|++...+.|.+.|++|++.|.++.|+|+|++
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~ 79 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGD 79 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECC
Confidence 4799999999999999999999999999985 2344455667 9999999999999999999999999999999999999
Q ss_pred eEeeceeEEEEeeecccccccccccceecc
Q 013993 170 LVVKNQDFIEATKEASITFLAAKFDGILGL 199 (432)
Q Consensus 170 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 199 (432)
..++++.||++....+..+.....+|||||
T Consensus 80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 80 IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999999999886644445678999998
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.87 E-value=3.6e-21 Score=170.15 Aligned_cols=136 Identities=34% Similarity=0.523 Sum_probs=105.5
Q ss_pred EEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeC----------------------Cce
Q 013993 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRN----------------------GTS 146 (432)
Q Consensus 89 Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~----------------------~~~ 146 (432)
|+++|.||||+|++.|++||||+.+|++| ..+.|++.+|+||+.. .|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 89999999999999999999999999986 2467888888888762 268
Q ss_pred EEEEeccCe-EEEEEEEEEEEEce-----eEeeceeEEEEeeecccccccccccceecccccccccCCCCchhhhhhhcC
Q 013993 147 AAIQYGTGA-ISGFFSQDNVKVGD-----LVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQG 220 (432)
Q Consensus 147 ~~~~Y~~gs-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg 220 (432)
|.+.|++++ ..|.+++|+++++. ..+.++.|||+....+. ....+||||||+...+ ++.+|.++
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~---~~~~~GilGLg~~~~S------l~sQl~~~- 140 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGL---FYGADGILGLGRGPLS------LPSQLASS- 140 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTS---STTEEEEEE-SSSTTS------HHHHHHHH-
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccC---CcCCCcccccCCCccc------HHHHHHHh-
Confidence 999999986 68999999999986 46788999999877643 2277999999998887 77788777
Q ss_pred CCCCCeEEEEeccCCCCCCCcEEEECc
Q 013993 221 LVKEPVFSFWLNRDIEGEEGGEIVFGG 247 (432)
Q Consensus 221 ~i~~~~fs~~l~~~~~~~~~G~l~fGg 247 (432)
..++||+||.+ .+....|.|+||+
T Consensus 141 --~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 --SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp ----SEEEEEB-S--SSSSEEEEEECS
T ss_pred --cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 57899999998 2234589999995
No 26
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=99.04 E-value=1.1e-10 Score=77.04 Aligned_cols=38 Identities=26% Similarity=0.646 Sum_probs=36.9
Q ss_pred ccchhhHHHHHHHHHHhhhcccHHHHHHHHHhhcccCC
Q 013993 386 AMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLP 423 (432)
Q Consensus 386 ~~C~~C~~~v~~~~~~l~~n~t~~~i~~~l~~~C~~lp 423 (432)
..|.+|+++|.+++++|++|.|+++|+++|+++|++||
T Consensus 2 ~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 2 DECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred CcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 46999999999999999999999999999999999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.19 E-value=5.9e-06 Score=65.51 Aligned_cols=92 Identities=21% Similarity=0.356 Sum_probs=65.7
Q ss_pred eEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEeccCeE-EEEEEEEEEE
Q 013993 88 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAI-SGFFSQDNVK 166 (432)
Q Consensus 88 ~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~-~G~~~~D~v~ 166 (432)
.|++++.|| ++++++++|||++.+|+...... .+. . . ........+...+|.. ......+.++
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~---~l~---~-------~-~~~~~~~~~~~~~G~~~~~~~~~~~i~ 65 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAE---RLG---L-------P-LTLGGKVTVQTANGRVRAARVRLDSLQ 65 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH---HcC---C-------C-ccCCCcEEEEecCCCccceEEEcceEE
Confidence 489999999 69999999999999999764221 111 0 0 1122345667777764 4555689999
Q ss_pred EceeEeeceeEEEEeeecccccccccccceecccc
Q 013993 167 VGDLVVKNQDFIEATKEASITFLAAKFDGILGLGF 201 (432)
Q Consensus 167 ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 201 (432)
+|+..++++.+........ ..+||||+.+
T Consensus 66 ig~~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 66 IGGITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred ECCcEEeccEEEEeCCccc------CCceEeChHH
Confidence 9999999999887754321 4699999864
No 28
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=98.03 E-value=2.3e-06 Score=77.76 Aligned_cols=89 Identities=27% Similarity=0.524 Sum_probs=69.3
Q ss_pred ccccccccccceehhhhhhccCcccccccccccccCCccceecccccccccCCCCCCCCCCCCccchhhHHHHHHHHHHh
Q 013993 323 ECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKL 402 (432)
Q Consensus 323 ~C~~~v~~yg~~ii~~~~~~~~p~~ic~~~glC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~v~~~~~~l 402 (432)
+|..++++|++.+++.+.+.+.|+.+|...++|..... ...++.+. . .....|..|+++|+++...|
T Consensus 78 ~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~~~~------~~~~~~~~-----~--~~~~~C~~C~~~V~~~~~~l 144 (218)
T KOG1340|consen 78 ECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSASAG------PVSEVFAS-----Q--PAAGECELCRETVTEADTKL 144 (218)
T ss_pred HHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCcccc------hhhhhhhh-----c--ccccccHHHHHHHHHHHHhc
Confidence 89999999999999999998999999999999996111 01111111 1 23788999999999999999
Q ss_pred hh-cccHHHHHHHHHhhcccCCC
Q 013993 403 RR-NETADQILNYVNQLCDRLPS 424 (432)
Q Consensus 403 ~~-n~t~~~i~~~l~~~C~~lp~ 424 (432)
++ ++|+..|.....+.|.-+|.
T Consensus 145 ~d~~~~k~~~~~~~~~~ck~l~~ 167 (218)
T KOG1340|consen 145 QDKPKTKGKIVSLLLKSCKSLPN 167 (218)
T ss_pred ccchhHHHHHHHHHHhhccCCcc
Confidence 99 77777777777888855554
No 29
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=97.78 E-value=3.9e-05 Score=67.51 Aligned_cols=50 Identities=18% Similarity=0.328 Sum_probs=40.7
Q ss_pred cceEEeceEEECCeeeeecCC-------CceEEEcCCCcCcccCHHHHHHHHHHhCC
Q 013993 267 YWQFEMGDVLIDGETTGYCST-------GCNAIADSGTSLLAGPTTIITQINHAIGA 316 (432)
Q Consensus 267 ~w~v~l~~i~v~~~~~~~~~~-------~~~aiiDTGts~~~lP~~~~~~i~~~i~a 316 (432)
+|.|++.+|+||++.+.+... ...++|||||++++||+++++++.+++.+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~ 57 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDA 57 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHH
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHH
Confidence 588999999999999876543 46899999999999999999999998854
No 30
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.53 E-value=0.00074 Score=56.33 Aligned_cols=101 Identities=20% Similarity=0.348 Sum_probs=67.2
Q ss_pred eeecccCCceEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEeccCeEE-
Q 013993 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAIS- 157 (432)
Q Consensus 79 ~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~- 157 (432)
++++-..+..|++++.|. ++++.+++|||++.+-++..-- ..-..++.. ......+.=+.|...
T Consensus 2 ~~i~~~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A-------~~Lgl~~~~------~~~~~~~~ta~G~~~~ 66 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDA-------QRLGLDLNR------LGYTVTVSTANGQIKA 66 (121)
T ss_pred EEEEEcCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHH-------HHcCCCccc------CCceEEEEeCCCcEEE
Confidence 455556688999999997 5899999999999998854211 001111111 122334444566544
Q ss_pred EEEEEEEEEEceeEeeceeEEEEeeecccccccccccceecccc
Q 013993 158 GFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGF 201 (432)
Q Consensus 158 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 201 (432)
..+.-|.+.+|+..++|..+.++.... ..+|+||+.+
T Consensus 67 ~~~~l~~l~iG~~~~~nv~~~v~~~~~-------~~~~LLGm~f 103 (121)
T TIGR02281 67 ARVTLDRVAIGGIVVNDVDAMVAEGGA-------LSESLLGMSF 103 (121)
T ss_pred EEEEeCEEEECCEEEeCcEEEEeCCCc-------CCceEcCHHH
Confidence 456889999999999999987764321 1279999974
No 31
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=97.49 E-value=5.1e-05 Score=57.27 Aligned_cols=40 Identities=30% Similarity=0.658 Sum_probs=37.5
Q ss_pred cchhhHHHHHHHHHHhhhcccHHHHHHHHHhhcccCCCCC
Q 013993 387 MCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPN 426 (432)
Q Consensus 387 ~C~~C~~~v~~~~~~l~~n~t~~~i~~~l~~~C~~lp~~~ 426 (432)
.|..|+++|..+++.+.++.++++|.++++++|+.+|.+.
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~~~~ 41 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLPKSL 41 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCHHH
Confidence 5999999999999999999999999999999999999443
No 32
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=97.46 E-value=6.1e-06 Score=52.81 Aligned_cols=34 Identities=50% Similarity=1.123 Sum_probs=32.4
Q ss_pred eccccccccccceehhhhhhccCccccccccccc
Q 013993 322 QECKTLVDQYGKTILEMLIAETQPQKICSQMGLC 355 (432)
Q Consensus 322 ~~C~~~v~~yg~~ii~~~~~~~~p~~ic~~~glC 355 (432)
..|++++++|++.+++++.+++.|+.+|..+|+|
T Consensus 2 ~~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 2 DECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 4799999999999999999999999999999998
No 33
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.97 E-value=0.006 Score=47.34 Aligned_cols=87 Identities=21% Similarity=0.339 Sum_probs=53.5
Q ss_pred EEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEeccCeE-EEEEEEEEEEEcee
Q 013993 92 EVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAI-SGFFSQDNVKVGDL 170 (432)
Q Consensus 92 ~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~-~G~~~~D~v~ig~~ 170 (432)
++.|+ .+++++++|||++.+.+...... .-..... .......+.-.+|.. ......+.+++|+.
T Consensus 2 ~v~vn--g~~~~~liDTGa~~~~i~~~~~~-------~l~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~i~ig~~ 66 (90)
T PF13650_consen 2 PVKVN--GKPVRFLIDTGASISVISRSLAK-------KLGLKPR------PKSVPISVSGAGGSVTVYRGRVDSITIGGI 66 (90)
T ss_pred EEEEC--CEEEEEEEcCCCCcEEECHHHHH-------HcCCCCc------CCceeEEEEeCCCCEEEEEEEEEEEEECCE
Confidence 56777 58999999999998888543321 0011111 111123333344543 34555668999999
Q ss_pred EeeceeEEEEeeecccccccccccceeccc
Q 013993 171 VVKNQDFIEATKEASITFLAAKFDGILGLG 200 (432)
Q Consensus 171 ~~~~~~fg~~~~~~~~~~~~~~~~GilGLg 200 (432)
.+.+..|.... .....+||||+-
T Consensus 67 ~~~~~~~~v~~-------~~~~~~~iLG~d 89 (90)
T PF13650_consen 67 TLKNVPFLVVD-------LGDPIDGILGMD 89 (90)
T ss_pred EEEeEEEEEEC-------CCCCCEEEeCCc
Confidence 98888877665 123468999974
No 34
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=95.92 E-value=0.092 Score=51.35 Aligned_cols=194 Identities=21% Similarity=0.283 Sum_probs=103.9
Q ss_pred EEEEEEecCCC----cEE-EEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCce--EEEEeccCeEEEEEE
Q 013993 89 YFGEVSIGTPS----QTF-TVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTS--AAIQYGTGAISGFFS 161 (432)
Q Consensus 89 Y~~~i~iGtP~----q~~-~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~--~~~~Y~~gs~~G~~~ 161 (432)
=++.|+|=.|. |++ +|++||||.-|-|..+.-.. .-........+ .+.+ --..|++|..=|.+.
T Consensus 24 p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~----~l~~~Lp~~t~-----~g~~laEC~~F~sgytWGsVr 94 (370)
T PF11925_consen 24 PTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPS----SLAGSLPQQTG-----GGAPLAECAQFASGYTWGSVR 94 (370)
T ss_pred eeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhch----hhhccCCcccC-----CCcchhhhhhccCcccccceE
Confidence 46777774443 666 59999999988886543210 00001111111 1111 225677777678899
Q ss_pred EEEEEEceeEeeceeEEEEeeec-----------c---cccccccccceecccccccccC-------------------C
Q 013993 162 QDNVKVGDLVVKNQDFIEATKEA-----------S---ITFLAAKFDGILGLGFQEISIG-------------------K 208 (432)
Q Consensus 162 ~D~v~ig~~~~~~~~fg~~~~~~-----------~---~~~~~~~~~GilGLg~~~~s~~-------------------~ 208 (432)
+.+|+||+....+..+-++.+.. + ......+.+||||+|.-....+ .
T Consensus 95 ~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C~~~~s 174 (370)
T PF11925_consen 95 TADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSALPGNYYSCPSGGS 174 (370)
T ss_pred EEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcccCCCceEECCCCCC
Confidence 99999998766665555443320 0 1122456799999996433210 0
Q ss_pred CCchhhhhhhcCCCCCCeEEEEeccC---------C---CCCCCcEEEECccCCC---CCccceEEEecCCCCcceEEec
Q 013993 209 AIPVWYNMLDQGLVKEPVFSFWLNRD---------I---EGEEGGEIVFGGVDPD---HYKGEHTYVPVTKKGYWQFEMG 273 (432)
Q Consensus 209 ~~p~~~~l~~qg~i~~~~fs~~l~~~---------~---~~~~~G~l~fGg~D~s---~~~g~l~~~pv~~~~~w~v~l~ 273 (432)
-++.--.+-+| +..|+..|-.+.+ + .....|.|+|| |++. ...+..+..+..+.++..-
T Consensus 175 Ct~t~v~~~~Q--V~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFG-IgTQsNN~l~~~~~~~~~~~~G~~tt--- 248 (370)
T PF11925_consen 175 CTSTTVPLAQQ--VANPVARFATDNNGVIIQLPAVSASGAASATGTLIFG-IGTQSNNALPSGATVLTTDSNGDFTT--- 248 (370)
T ss_pred eecccchhhhc--ccCcccccCccCCeEEEecCCCCCCCCccceEEEEEe-cCCcccCcccccceEEeecCCceEEE---
Confidence 01111122233 4456655533222 1 22357999999 3321 1123245555566565321
Q ss_pred eEEECCeeeeecCCCceEEEcCCCcCcccCHH
Q 013993 274 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTT 305 (432)
Q Consensus 274 ~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~ 305 (432)
..+|.... ...||||+.-.++|..
T Consensus 249 --~~~G~t~~------~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 249 --TFNGQTYS------ASFFDSGSNGYFFPDS 272 (370)
T ss_pred --EecCceee------eeeEecCCceeeccCC
Confidence 33444322 3499999998888754
No 35
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.78 E-value=0.096 Score=43.77 Aligned_cols=92 Identities=21% Similarity=0.274 Sum_probs=57.6
Q ss_pred CCceEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEE-EEeccC--eEEEEEE
Q 013993 85 MDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAA-IQYGTG--AISGFFS 161 (432)
Q Consensus 85 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~-~~Y~~g--s~~G~~~ 161 (432)
....+++++.|+ ++++.+++|||++..++...-+. .+. -.... ...+. ...+.| ...|...
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~---~lg----l~~~~-------~~~~~~~~~g~g~~~~~g~~~ 76 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAE---KCG----LMRLI-------DKRFQGIAKGVGTQKILGRIH 76 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHH---HcC----Ccccc-------CcceEEEEecCCCcEEEeEEE
Confidence 345689999998 58999999999999988543221 111 00001 11122 122323 2457777
Q ss_pred EEEEEEceeEeeceeEEEEeeecccccccccccceecccc
Q 013993 162 QDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGF 201 (432)
Q Consensus 162 ~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 201 (432)
.+.+.+++...+ ..|.+... ...|+|||+-+
T Consensus 77 ~~~l~i~~~~~~-~~~~Vl~~--------~~~d~ILG~d~ 107 (124)
T cd05479 77 LAQVKIGNLFLP-CSFTVLED--------DDVDFLIGLDM 107 (124)
T ss_pred EEEEEECCEEee-eEEEEECC--------CCcCEEecHHH
Confidence 889999998765 66665432 24689999864
No 36
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=95.34 E-value=0.14 Score=45.94 Aligned_cols=105 Identities=18% Similarity=0.269 Sum_probs=73.6
Q ss_pred CCceeeecccCCceEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEeccC
Q 013993 75 DTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTG 154 (432)
Q Consensus 75 ~~~~~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~g 154 (432)
+...+.|....++-|+++..|- +|+++.++|||-+.+-++...-. .-.|+.+. .+.++.+.=++|
T Consensus 92 g~~~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~-------RlGid~~~------l~y~~~v~TANG 156 (215)
T COG3577 92 GYQEVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR-------RLGIDLNS------LDYTITVSTANG 156 (215)
T ss_pred CceEEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH-------HhCCCccc------cCCceEEEccCC
Confidence 4457888888899999999997 69999999999999988654321 12344322 234555556778
Q ss_pred eEEE-EEEEEEEEEceeEeeceeEEEEeeecccccccccccceecccc
Q 013993 155 AISG-FFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGF 201 (432)
Q Consensus 155 s~~G-~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 201 (432)
...+ .+-.|.|.||+..++|+.=.++.... ...-+||+.|
T Consensus 157 ~~~AA~V~Ld~v~IG~I~~~nV~A~V~~~g~-------L~~sLLGMSf 197 (215)
T COG3577 157 RARAAPVTLDRVQIGGIRVKNVDAMVAEDGA-------LDESLLGMSF 197 (215)
T ss_pred ccccceEEeeeEEEccEEEcCchhheecCCc-------cchhhhhHHH
Confidence 7654 56789999999999888755443221 1245677764
No 37
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=94.69 E-value=0.2 Score=39.15 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=46.5
Q ss_pred EEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEeccCe---EEEEEEEEEE
Q 013993 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA---ISGFFSQDNV 165 (432)
Q Consensus 89 Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs---~~G~~~~D~v 165 (432)
|++++.|+ ++++.+++||||+..++....+. .....+ .......+.=.+|. ..|.+ .+.+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~~~-------~lg~~~-------~~~~~~~v~~a~G~~~~~~G~~-~~~v 63 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKTWR-------KLGSPP-------LKPTKKRLRTATGTKLSVLGQI-LVTV 63 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHHHH-------HhCCCc-------cccccEEEEecCCCEeeEeEEE-EEEE
Confidence 57889998 59999999999999999764431 000111 11123334444554 35766 7889
Q ss_pred EEceeEeeceeEEEE
Q 013993 166 KVGDLVVKNQDFIEA 180 (432)
Q Consensus 166 ~ig~~~~~~~~fg~~ 180 (432)
++++... ...|-..
T Consensus 64 ~~~~~~~-~~~~~v~ 77 (91)
T cd05484 64 KYGGKTK-VLTLYVV 77 (91)
T ss_pred EECCEEE-EEEEEEE
Confidence 9998764 3555444
No 38
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=93.11 E-value=0.65 Score=35.92 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=46.9
Q ss_pred EEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEeccCeEEEEE-EEE-EEEEce
Q 013993 92 EVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFF-SQD-NVKVGD 169 (432)
Q Consensus 92 ~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G~~-~~D-~v~ig~ 169 (432)
.+.|. ++++.+++|||++.+-+...... ... .......+.=.+|...-.+ ..+ .+.+|+
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~a~--------~~~---------~~~~~~~v~gagG~~~~~v~~~~~~v~vg~ 62 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDLGP--------KQE---------LSTTSVLIRGVSGQSQQPVTTYRTLVDLGG 62 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHHhh--------hcc---------CCCCcEEEEeCCCcccccEEEeeeEEEECC
Confidence 35565 58999999999999999765432 001 1112333333344321111 123 699999
Q ss_pred eEeeceeEEEEeeecccccccccccceecccc
Q 013993 170 LVVKNQDFIEATKEASITFLAAKFDGILGLGF 201 (432)
Q Consensus 170 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 201 (432)
..+.++ |...... .++|||+-|
T Consensus 63 ~~~~~~-~~v~~~~---------~~~lLG~df 84 (86)
T cd06095 63 HTVSHS-FLVVPNC---------PDPLLGRDL 84 (86)
T ss_pred EEEEEE-EEEEcCC---------CCcEechhh
Confidence 988854 5443221 278999864
No 39
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=92.84 E-value=0.05 Score=49.76 Aligned_cols=42 Identities=24% Similarity=0.559 Sum_probs=38.6
Q ss_pred CCccchhhHHHHHHHHHHhhhcccHHHHHHHHHhhcccCCCCCC
Q 013993 384 DSAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNG 427 (432)
Q Consensus 384 ~~~~C~~C~~~v~~~~~~l~~n~t~~~i~~~l~~~C~~lp~~~~ 427 (432)
....|..|+++|+.++..+..| .++|.+.|+..|..+|...+
T Consensus 35 ~~~~C~lCe~~v~~i~~~~~~~--~~~i~~~l~~~Ckkl~~~~~ 76 (218)
T KOG1340|consen 35 SAEVCELCELVVKRIQEYLDKN--QNELKEDLHAECKKLPKAIP 76 (218)
T ss_pred ccchhHHHHHHHHHHHHhhccc--HHHHHHHHHHHHHHhcccch
Confidence 4677999999999999999999 99999999999999998764
No 40
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=92.19 E-value=0.024 Score=42.31 Aligned_cols=37 Identities=41% Similarity=0.996 Sum_probs=34.3
Q ss_pred eeeeccccccccccceehhhhhhccCccccccccccc
Q 013993 319 VISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLC 355 (432)
Q Consensus 319 ~~~~~C~~~v~~yg~~ii~~~~~~~~p~~ic~~~glC 355 (432)
.+...|+.+++.|++.+++.+.+...|+.+|..+|+|
T Consensus 40 ~~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 40 SLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 5778899999999999999999888899999999998
No 41
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=87.91 E-value=0.98 Score=33.67 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=28.5
Q ss_pred CceEEEEEEecCCCcEEEEEeecCCCceeeeCCCC
Q 013993 86 DAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC 120 (432)
Q Consensus 86 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C 120 (432)
...+++.+.|| ++.+..++|||++..+|+.+.+
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 57899999999 4999999999999999876543
No 42
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=87.11 E-value=0.35 Score=29.29 Aligned_cols=24 Identities=33% Similarity=0.221 Sum_probs=16.5
Q ss_pred eEEEeeeeccchhhhhcccCcccc
Q 013993 30 LVRIGLRKKKLDQINRLVGQTVSK 53 (432)
Q Consensus 30 ~~~vpl~k~~~~~~~~~~~~~~~~ 53 (432)
++||||+|.++.|..+.+.+...+
T Consensus 1 l~rIPL~K~kS~R~~L~e~g~~~~ 24 (29)
T PF07966_consen 1 LVRIPLKKFKSMRETLREKGTLEE 24 (29)
T ss_dssp -EEEEEEE---HHHHHHHTT-HHH
T ss_pred CEEEeccCCchHHHHHHHcCchHH
Confidence 479999999999999988887654
No 43
>PF13650 Asp_protease_2: Aspartyl protease
Probab=82.62 E-value=1.7 Score=33.27 Aligned_cols=29 Identities=17% Similarity=0.398 Sum_probs=23.7
Q ss_pred EEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHH
Q 013993 275 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (432)
Q Consensus 275 i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i 310 (432)
+.|||++. .+++|||++.+.++++.++++
T Consensus 3 v~vng~~~-------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-------EEEEcCCCCcEEECHHHHHHc
Confidence 56777644 589999999999999888776
No 44
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=80.85 E-value=2.2 Score=35.45 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=27.8
Q ss_pred CCcceEEeceEEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHHH
Q 013993 265 KGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQIN 311 (432)
Q Consensus 265 ~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i~ 311 (432)
.+++.++ +.|||++. .++||||++.+.++.+.++++-
T Consensus 9 ~g~~~v~---~~InG~~~-------~flVDTGAs~t~is~~~A~~Lg 45 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNV-------RFLVDTGATSVALNEEDAQRLG 45 (121)
T ss_pred CCeEEEE---EEECCEEE-------EEEEECCCCcEEcCHHHHHHcC
Confidence 3445443 56788754 5799999999999999887763
No 45
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=79.13 E-value=3.5 Score=30.68 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=24.1
Q ss_pred EEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHH
Q 013993 275 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (432)
Q Consensus 275 i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i 310 (432)
+.|+|..+ .+++|||++-.++|.+.++.+
T Consensus 13 ~~I~g~~~-------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-------EEEEeCCCcceecCHHHHHHh
Confidence 56777554 489999999999999988886
No 46
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=78.14 E-value=3.3 Score=32.65 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=23.3
Q ss_pred EEEEEecCCCcEEEEEeecCCCceeeeCCCC
Q 013993 90 FGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC 120 (432)
Q Consensus 90 ~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C 120 (432)
+.+|.|. .+++.+++||||+..-++...+
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccccc
Confidence 5667777 4899999999999988876543
No 47
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=75.44 E-value=3.9 Score=31.76 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=25.2
Q ss_pred eEEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHHH
Q 013993 274 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQIN 311 (432)
Q Consensus 274 ~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i~ 311 (432)
.+.|||+.+. +.+|||++...++++.+..+.
T Consensus 4 ~~~Ing~~i~-------~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 4 TLLVNGKPLK-------FQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEEECCEEEE-------EEEcCCcceEEeCHHHHHHhC
Confidence 3578888664 799999999999998887653
No 48
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=73.88 E-value=4.9 Score=30.94 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=23.9
Q ss_pred eEEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHHH
Q 013993 274 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQIN 311 (432)
Q Consensus 274 ~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i~ 311 (432)
.+.||++++ .+++|||++.+.++.+..+++.
T Consensus 6 ~v~i~~~~~-------~~llDTGa~~s~i~~~~~~~l~ 36 (96)
T cd05483 6 PVTINGQPV-------RFLLDTGASTTVISEELAERLG 36 (96)
T ss_pred EEEECCEEE-------EEEEECCCCcEEcCHHHHHHcC
Confidence 356776544 5899999999999998777653
No 49
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=73.09 E-value=4.3 Score=31.26 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=24.2
Q ss_pred EEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHH
Q 013993 275 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (432)
Q Consensus 275 i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i 310 (432)
+.|||+.+. .++|||.+.+.++++.++.+
T Consensus 3 v~InG~~~~-------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-------EEEECCCCeEEECHHHhhhc
Confidence 567777654 79999999999999988875
No 50
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=69.91 E-value=7.6 Score=33.54 Aligned_cols=37 Identities=11% Similarity=0.334 Sum_probs=33.6
Q ss_pred CCccchhhHHHHHHHHHHhhhcccHHHHHHHHHhhcc
Q 013993 384 DSAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCD 420 (432)
Q Consensus 384 ~~~~C~~C~~~v~~~~~~l~~n~t~~~i~~~l~~~C~ 420 (432)
.+..|.+|..+....-.+.++.++..||.+++++-=.
T Consensus 110 Hg~~C~vCl~ia~~a~~~~~~Gks~~eIR~~ID~kYk 146 (158)
T PF13798_consen 110 HGTRCGVCLDIAVQAVQMYQEGKSPKEIRQYIDEKYK 146 (158)
T ss_pred cccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3788999999999999999999999999999987543
No 51
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=66.78 E-value=7.4 Score=32.29 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=23.1
Q ss_pred EEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHH
Q 013993 275 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (432)
Q Consensus 275 i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i 310 (432)
+.|||.+. .+++|||++.+.++++.++++
T Consensus 21 ~~Ing~~~-------~~LvDTGAs~s~Is~~~a~~l 49 (124)
T cd05479 21 VEINGVPV-------KAFVDSGAQMTIMSKACAEKC 49 (124)
T ss_pred EEECCEEE-------EEEEeCCCceEEeCHHHHHHc
Confidence 45676654 489999999999999887763
No 52
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=64.41 E-value=9.2 Score=29.74 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=21.3
Q ss_pred EEEecCCCcEEEEEeecCCCceeeeCCC
Q 013993 92 EVSIGTPSQTFTVIFDTGSSNLWVPSAK 119 (432)
Q Consensus 92 ~i~iGtP~q~~~v~~DTGSs~~WV~~~~ 119 (432)
.+.|+ +|.+.+++|||+.++-+....
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~~ 27 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEND 27 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEcccc
Confidence 35666 699999999999999997543
No 53
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=61.30 E-value=5.2 Score=31.67 Aligned_cols=8 Identities=25% Similarity=0.276 Sum_probs=5.5
Q ss_pred CCcchhhH
Q 013993 1 MGTKFTAI 8 (432)
Q Consensus 1 M~~~~~~~ 8 (432)
|+++..++
T Consensus 1 MaSK~~ll 8 (95)
T PF07172_consen 1 MASKAFLL 8 (95)
T ss_pred CchhHHHH
Confidence 88776555
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=58.04 E-value=28 Score=29.05 Aligned_cols=80 Identities=19% Similarity=0.293 Sum_probs=44.5
Q ss_pred CceEEEEEEecCCCcEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEeccCe--EEEEEEEE
Q 013993 86 DAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA--ISGFFSQD 163 (432)
Q Consensus 86 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs--~~G~~~~D 163 (432)
....|++++|+ ++++.+++|||.-.+-+.. .|. ..|.-....+.. .-...+|-|. +.|.+..-
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~-~~a--~r~gL~~lid~r----------~~g~a~GvG~~~i~G~Ih~~ 86 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSK-SCA--ERCGLMRLIDKR----------FAGVAKGVGTQKILGRIHSV 86 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEH-HHH--HHTTGGGGEEGG----------G-EE-------EEEEEEEEE
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCH-HHH--HHcCChhhcccc----------ccccccCCCcCceeEEEEEE
Confidence 34689999999 5999999999999987753 342 345432222210 0122344453 67989888
Q ss_pred EEEEceeEeeceeEEEEe
Q 013993 164 NVKVGDLVVKNQDFIEAT 181 (432)
Q Consensus 164 ~v~ig~~~~~~~~fg~~~ 181 (432)
.+.+|+..++ ..|-+..
T Consensus 87 ~l~ig~~~~~-~s~~Vle 103 (124)
T PF09668_consen 87 QLKIGGLFFP-CSFTVLE 103 (124)
T ss_dssp EEEETTEEEE-EEEEEET
T ss_pred EEEECCEEEE-EEEEEeC
Confidence 9999986665 5554443
No 55
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=56.47 E-value=8.4 Score=31.14 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=18.8
Q ss_pred CceEEEcCCCcCcc-cCHHHHHHH
Q 013993 288 GCNAIADSGTSLLA-GPTTIITQI 310 (432)
Q Consensus 288 ~~~aiiDTGts~~~-lP~~~~~~i 310 (432)
.-.+++|||.+... +|.++++++
T Consensus 16 ~v~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 16 EVRALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEEEECCCCeEEecCHHHHHHc
Confidence 34689999999886 999887774
No 56
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=54.23 E-value=17 Score=31.74 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=21.3
Q ss_pred EEEEecCCCcEEEEEeecCCCceeeeCC
Q 013993 91 GEVSIGTPSQTFTVIFDTGSSNLWVPSA 118 (432)
Q Consensus 91 ~~i~iGtP~q~~~v~~DTGSs~~WV~~~ 118 (432)
..+.++.-..++.++|||||+.-++...
T Consensus 35 ~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEeecCcEEEEEEeCCCccceeehh
Confidence 3444445568999999999999888653
No 57
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=53.77 E-value=18 Score=32.76 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=26.1
Q ss_pred eEEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHHH
Q 013993 274 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQIN 311 (432)
Q Consensus 274 ~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i~ 311 (432)
...|||+.+. .++|||.|.+.++++..+.+-
T Consensus 109 ~~~VNGk~v~-------fLVDTGATsVal~~~dA~RlG 139 (215)
T COG3577 109 NGRVNGKKVD-------FLVDTGATSVALNEEDARRLG 139 (215)
T ss_pred EEEECCEEEE-------EEEecCcceeecCHHHHHHhC
Confidence 4678888775 699999999999999887754
No 58
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=52.55 E-value=11 Score=29.60 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=21.0
Q ss_pred eEEECCeeeeecCCCceEEEcCCCcCcccCHHHH
Q 013993 274 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTII 307 (432)
Q Consensus 274 ~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~ 307 (432)
.+.++|+.+ .+++|||+..+.+|.+.+
T Consensus 9 ~v~i~g~~i-------~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKI-------KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEE-------EEEEETTBSSEEESSGGS
T ss_pred EEeECCEEE-------EEEEecCCCcceeccccc
Confidence 356777655 489999999999997644
No 59
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=51.50 E-value=1.2e+02 Score=25.62 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=24.4
Q ss_pred ceEEEEEEecCCCcEEEEEeecCCCceeeeC
Q 013993 87 AQYFGEVSIGTPSQTFTVIFDTGSSNLWVPS 117 (432)
Q Consensus 87 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~WV~~ 117 (432)
..-.+.+.|.+ ++..+++|+|++.-+|..
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISS 48 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccH
Confidence 35678888886 899999999999998854
No 60
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=50.08 E-value=18 Score=28.38 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=19.7
Q ss_pred ceEEEcCCCcCcccCHHHHHHHH
Q 013993 289 CNAIADSGTSLLAGPTTIITQIN 311 (432)
Q Consensus 289 ~~aiiDTGts~~~lP~~~~~~i~ 311 (432)
..+.+|||++...+|...+.++.
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 35799999999999998887765
No 61
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=49.27 E-value=20 Score=29.84 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=22.6
Q ss_pred eEEECCeeeeecCCCceEEEcCCCcCcccCHHHHHHH
Q 013993 274 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (432)
Q Consensus 274 ~i~v~~~~~~~~~~~~~aiiDTGts~~~lP~~~~~~i 310 (432)
.+.+||..+ .|++|||+..+.++.+.++++
T Consensus 28 ~~~ing~~v-------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV-------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE-------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE-------EEEEeCCCCccccCHHHHHHc
Confidence 356788765 489999999999999888774
No 62
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=46.86 E-value=13 Score=30.86 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=18.2
Q ss_pred eEEEcCCCc-CcccCHHHHHHHH
Q 013993 290 NAIADSGTS-LLAGPTTIITQIN 311 (432)
Q Consensus 290 ~aiiDTGts-~~~lP~~~~~~i~ 311 (432)
..++|||.+ ++.+|.++++++.
T Consensus 28 ~~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 28 DELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eeEEecCCceeEEeCHHHHHhcC
Confidence 348999988 9999998887754
No 63
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=43.67 E-value=34 Score=29.49 Aligned_cols=34 Identities=9% Similarity=0.184 Sum_probs=27.4
Q ss_pred CCccchhhHHHHHHHHHHhhhcccHHHHHHHHHh
Q 013993 384 DSAMCSACEMAVIWMQNKLRRNETADQILNYVNQ 417 (432)
Q Consensus 384 ~~~~C~~C~~~v~~~~~~l~~n~t~~~i~~~l~~ 417 (432)
.+..|.+++-+-..+.++|.+.+|++||.+++-+
T Consensus 52 ~~s~a~~A~dmR~~I~~~l~~G~s~~eI~~~~v~ 85 (148)
T PF03918_consen 52 ADSNAPIARDMRREIREMLAEGKSDEEIIDYFVE 85 (148)
T ss_dssp TT--SHHHHHHHHHHHHHHHHT--HHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4566999999999999999999999999999854
No 64
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=41.58 E-value=36 Score=27.73 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=30.2
Q ss_pred CCccchhhHHHHHHHHH---------HhhhcccHHHHHHHHHhh
Q 013993 384 DSAMCSACEMAVIWMQN---------KLRRNETADQILNYVNQL 418 (432)
Q Consensus 384 ~~~~C~~C~~~v~~~~~---------~l~~n~t~~~i~~~l~~~ 418 (432)
..+.|.-|+.+..|++. ++++..|++|+...+.++
T Consensus 6 ~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~~ 49 (113)
T cd03033 6 EKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGDL 49 (113)
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHHc
Confidence 35779999999999985 778889999999998854
No 65
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=40.34 E-value=41 Score=25.86 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHhhhcccHHHHHHHHHhhcccCCCC
Q 013993 389 SACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSP 425 (432)
Q Consensus 389 ~~C~~~v~~~~~~l~~n~t~~~i~~~l~~~C~~lp~~ 425 (432)
..-+..=.-++.++.+..|+|+|..+|++-|...-.|
T Consensus 45 ~~Ae~Fr~~V~~li~~~Pt~EevDdfL~~y~~l~~qP 81 (85)
T PF12091_consen 45 SWAEMFREDVQALIASEPTQEEVDDFLGGYDALMQQP 81 (85)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC
Confidence 4556777888999999999999999999999876444
No 66
>PRK10853 putative reductase; Provisional
Probab=39.11 E-value=44 Score=27.49 Aligned_cols=34 Identities=9% Similarity=0.299 Sum_probs=29.4
Q ss_pred CCccchhhHHHHHHHHH---------HhhhcccHHHHHHHHHh
Q 013993 384 DSAMCSACEMAVIWMQN---------KLRRNETADQILNYVNQ 417 (432)
Q Consensus 384 ~~~~C~~C~~~v~~~~~---------~l~~n~t~~~i~~~l~~ 417 (432)
+.+.|..|+.+.+|++. ++++..|++++...+++
T Consensus 6 ~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~ 48 (118)
T PRK10853 6 GIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDE 48 (118)
T ss_pred cCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHH
Confidence 35679999999999985 67888899999999875
No 67
>PRK02710 plastocyanin; Provisional
Probab=37.92 E-value=48 Score=27.19 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=17.8
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhhcCCCceEEEee
Q 013993 1 MGTKFTAIRVALFLFLILSPAAFALPNDGLVRIGL 35 (432)
Q Consensus 1 M~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~vpl 35 (432)
|++|.+++++++++++..+++.+..+.+..++|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~V~~ 35 (119)
T PRK02710 1 MAKRLRSIAAALVAVVSSFGLGVSSASAETVEVKM 35 (119)
T ss_pred CchhHHHHHHHHHHHHHHHHhcccccccceEEEEE
Confidence 66666665323333333334444444556667665
No 68
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=35.84 E-value=2.1e+02 Score=22.32 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=38.3
Q ss_pred cEEEEEeecCCCceeeeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEeccCeEEEEEEEEEEE--EceeEeeceeE
Q 013993 100 QTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVK--VGDLVVKNQDF 177 (432)
Q Consensus 100 q~~~v~~DTGSs~~WV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs~~G~~~~D~v~--ig~~~~~~~~f 177 (432)
....+++|||+...-+|-..|. .. ....++.+.=++|+..-.+++-.++ +|....-...|
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~--------~~----------~~~~~~~l~AANgt~I~tyG~~~l~ldlGlrr~~~w~F 69 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTK--------KS----------LKPSPLTLQAANGTPIATYGTRSLTLDLGLRRPFAWNF 69 (89)
T ss_pred CCcEEEEeCCCceEeecccccc--------cc----------ccCCceEEEeCCCCeEeeeeeEEEEEEcCCCcEEeEEE
Confidence 3468999999999999876653 00 1223456666777755555555544 44432334666
Q ss_pred EEEe
Q 013993 178 IEAT 181 (432)
Q Consensus 178 g~~~ 181 (432)
..++
T Consensus 70 vvAd 73 (89)
T cd06094 70 VVAD 73 (89)
T ss_pred EEcC
Confidence 6554
No 69
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=33.34 E-value=46 Score=27.77 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=30.4
Q ss_pred CCccchhhHHHHHHHH---------HHhhhcccHHHHHHHHHhh
Q 013993 384 DSAMCSACEMAVIWMQ---------NKLRRNETADQILNYVNQL 418 (432)
Q Consensus 384 ~~~~C~~C~~~v~~~~---------~~l~~n~t~~~i~~~l~~~ 418 (432)
+.+.|.-|+.+.+|++ +++++..|.+++.+.+++.
T Consensus 7 ~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~~ 50 (126)
T TIGR01616 7 EKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGNK 50 (126)
T ss_pred eCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHHc
Confidence 3567999999999998 4678899999999999873
No 70
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=33.05 E-value=52 Score=26.46 Aligned_cols=66 Identities=15% Similarity=0.254 Sum_probs=38.6
Q ss_pred EEEEecCCCc----EEEEEeecCCCcee-eeCCCCCCCcccccCCcccCCCCCCceeCCceEEEEeccCe-EEEEEEEEE
Q 013993 91 GEVSIGTPSQ----TFTVIFDTGSSNLW-VPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA-ISGFFSQDN 164 (432)
Q Consensus 91 ~~i~iGtP~q----~~~v~~DTGSs~~W-V~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~gs-~~G~~~~D~ 164 (432)
++|.|..|.| ++.+++|||.+..- ++...-. .-..++.. .....-++|. +.-....++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~-------~lgl~~~~---------~~~~~tA~G~~~~~~v~~~~ 65 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN-------KLGLPELD---------QRRVYLADGREVLTDVAKAS 65 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH-------HcCCCccc---------CcEEEecCCcEEEEEEEEEE
Confidence 5677877732 67899999999764 5432110 01111111 1234445664 445577889
Q ss_pred EEEceeEe
Q 013993 165 VKVGDLVV 172 (432)
Q Consensus 165 v~ig~~~~ 172 (432)
+.+++...
T Consensus 66 v~igg~~~ 73 (107)
T TIGR03698 66 IIINGLEI 73 (107)
T ss_pred EEECCEEE
Confidence 99998755
No 71
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=30.49 E-value=22 Score=37.39 Aligned_cols=43 Identities=23% Similarity=0.426 Sum_probs=38.0
Q ss_pred CccchhhHHHHHHHHHHhhhcccHHHHHHHHHhhcccC---CCCCC
Q 013993 385 SAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRL---PSPNG 427 (432)
Q Consensus 385 ~~~C~~C~~~v~~~~~~l~~n~t~~~i~~~l~~~C~~l---p~~~~ 427 (432)
.+.|+.|+..+.-++..+..++|+..|..++-.+|+.+ |.+..
T Consensus 23 ~~~c~~c~~~~~~~~~~~~~~~~~~~v~v~~~~~c~~~~~~~~~vc 68 (577)
T KOG3770|consen 23 KAQCTFCEKELSNAQKFPARISTNCTVIVFAVAVCELFVIEPTPVC 68 (577)
T ss_pred cchhhhhhhhhhhHHhhhhcccccchhhhhHHHHhccccccCcchh
Confidence 45899999999999999999999999999999999955 55443
No 72
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=30.43 E-value=62 Score=26.62 Aligned_cols=35 Identities=20% Similarity=0.612 Sum_probs=29.3
Q ss_pred CCccchhhHHHHHHHHH---------HhhhcccHHHHHHHHHhh
Q 013993 384 DSAMCSACEMAVIWMQN---------KLRRNETADQILNYVNQL 418 (432)
Q Consensus 384 ~~~~C~~C~~~v~~~~~---------~l~~n~t~~~i~~~l~~~ 418 (432)
..+.|..|+.+..|+++ ++++..|++++.+.+++.
T Consensus 7 ~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~ 50 (117)
T COG1393 7 GNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKL 50 (117)
T ss_pred eCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHc
Confidence 46779999999999987 577888999988887654
No 73
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=30.09 E-value=87 Score=19.08 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=16.6
Q ss_pred HHHHHHHhhhcccHHHHHHHHHh
Q 013993 395 VIWMQNKLRRNETADQILNYVNQ 417 (432)
Q Consensus 395 v~~~~~~l~~n~t~~~i~~~l~~ 417 (432)
+..+....+.+-|++||.+||+.
T Consensus 6 ~~Li~eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 6 VELIKEAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHh
Confidence 44566777889999999999974
No 74
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=29.17 E-value=77 Score=25.38 Aligned_cols=33 Identities=12% Similarity=0.304 Sum_probs=28.3
Q ss_pred CccchhhHHHHHHHHH---------HhhhcccHHHHHHHHHh
Q 013993 385 SAMCSACEMAVIWMQN---------KLRRNETADQILNYVNQ 417 (432)
Q Consensus 385 ~~~C~~C~~~v~~~~~---------~l~~n~t~~~i~~~l~~ 417 (432)
.+.|.-|..+..|++. .+++..|++|+.+.+++
T Consensus 6 ~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~ 47 (105)
T cd03035 6 IKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAK 47 (105)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHH
Confidence 5679999999999986 56778899999998874
No 75
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=28.72 E-value=60 Score=26.38 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=28.9
Q ss_pred CccchhhHHHHHHHHH---------HhhhcccHHHHHHHHHhh
Q 013993 385 SAMCSACEMAVIWMQN---------KLRRNETADQILNYVNQL 418 (432)
Q Consensus 385 ~~~C~~C~~~v~~~~~---------~l~~n~t~~~i~~~l~~~ 418 (432)
.+.|..|+.+..|++. .+++..|++|+...++++
T Consensus 6 ~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~ 48 (114)
T TIGR00014 6 NPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKL 48 (114)
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHc
Confidence 5679999999999984 467788999999999864
No 76
>PRK10026 arsenate reductase; Provisional
Probab=28.62 E-value=55 Score=27.94 Aligned_cols=35 Identities=11% Similarity=0.349 Sum_probs=29.5
Q ss_pred CCccchhhHHHHHHHH---------HHhhhcccHHHHHHHHHhh
Q 013993 384 DSAMCSACEMAVIWMQ---------NKLRRNETADQILNYVNQL 418 (432)
Q Consensus 384 ~~~~C~~C~~~v~~~~---------~~l~~n~t~~~i~~~l~~~ 418 (432)
..+.|.-|..+..|++ +++++..|++|+.+.+++.
T Consensus 8 ~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~~ 51 (141)
T PRK10026 8 HNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIADM 51 (141)
T ss_pred eCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHhC
Confidence 4677999999999998 4567888999999998853
No 77
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=27.68 E-value=74 Score=29.69 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=30.6
Q ss_pred ceeeecccCCceEEEE---EEecC-----CCcEEEEEeecCCCceeeeCCCC
Q 013993 77 DIVALNNFMDAQYFGE---VSIGT-----PSQTFTVIFDTGSSNLWVPSAKC 120 (432)
Q Consensus 77 ~~~~l~~~~~~~Y~~~---i~iGt-----P~q~~~v~~DTGSs~~WV~~~~C 120 (432)
..+|+.......|.+. |.||. ......+++|||++.+++|...+
T Consensus 170 ~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~ 221 (283)
T cd05471 170 TYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVY 221 (283)
T ss_pred EEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHH
Confidence 3466665435566654 56775 24567899999999999987643
No 78
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=26.34 E-value=81 Score=30.56 Aligned_cols=39 Identities=28% Similarity=0.308 Sum_probs=26.2
Q ss_pred eeeecccCCceEEEE---EEecCC-----CcEEEEEeecCCCceeeeCC
Q 013993 78 IVALNNFMDAQYFGE---VSIGTP-----SQTFTVIFDTGSSNLWVPSA 118 (432)
Q Consensus 78 ~~~l~~~~~~~Y~~~---i~iGtP-----~q~~~v~~DTGSs~~WV~~~ 118 (432)
.+|+.+ ...|.++ |.||.. .+...+++|||++.+++|..
T Consensus 181 ~~pv~~--~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 181 YVPVTR--KGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred EEecCc--CcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 456643 3456554 677742 23457999999999999864
No 79
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=26.24 E-value=70 Score=25.88 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=28.5
Q ss_pred CCccchhhHHHHHHHHH---------HhhhcccHHHHHHHHHhh
Q 013993 384 DSAMCSACEMAVIWMQN---------KLRRNETADQILNYVNQL 418 (432)
Q Consensus 384 ~~~~C~~C~~~v~~~~~---------~l~~n~t~~~i~~~l~~~ 418 (432)
..+.|..|+.+.+|++. ..++..|++|+...++..
T Consensus 5 ~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~ 48 (112)
T cd03034 5 HNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKL 48 (112)
T ss_pred ECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHc
Confidence 35679999999999985 356677999999888765
No 80
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=25.23 E-value=73 Score=25.54 Aligned_cols=34 Identities=18% Similarity=0.575 Sum_probs=23.9
Q ss_pred CccchhhHHHHHHHHHH---------hhhcccHHHHHHHHHhh
Q 013993 385 SAMCSACEMAVIWMQNK---------LRRNETADQILNYVNQL 418 (432)
Q Consensus 385 ~~~C~~C~~~v~~~~~~---------l~~n~t~~~i~~~l~~~ 418 (432)
.+.|..|+.+..|++.. .+...|++|+...++.+
T Consensus 3 ~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~ 45 (110)
T PF03960_consen 3 NPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKL 45 (110)
T ss_dssp -TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHh
Confidence 45699999999999975 56677999988887764
No 81
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=24.46 E-value=1.2e+02 Score=28.40 Aligned_cols=42 Identities=19% Similarity=0.331 Sum_probs=26.6
Q ss_pred ceeeeccc--CCceEEEE---EEecCC-------------CcEEEEEeecCCCceeeeCC
Q 013993 77 DIVALNNF--MDAQYFGE---VSIGTP-------------SQTFTVIFDTGSSNLWVPSA 118 (432)
Q Consensus 77 ~~~~l~~~--~~~~Y~~~---i~iGtP-------------~q~~~v~~DTGSs~~WV~~~ 118 (432)
..+|+... ....|.++ |+||.- .....+++|||++.+.+|..
T Consensus 134 ~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 134 VYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred eEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcc
Confidence 34666542 13446554 688751 12345899999999999853
No 82
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=23.48 E-value=52 Score=27.82 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=17.9
Q ss_pred CCcchhhHHHHHHHHHHHH-hhhhhcCC
Q 013993 1 MGTKFTAIRVALFLFLILS-PAAFALPN 27 (432)
Q Consensus 1 M~~~~~~~~~~l~~~~l~~-~~~~~~~~ 27 (432)
|...|.|. +|+.|+|.| +.+++...
T Consensus 1 MmtcRLLC--alLvlaLcCCpsvc~t~~ 26 (143)
T PF01456_consen 1 MMTCRLLC--ALLVLALCCCPSVCATAS 26 (143)
T ss_pred CchHHHHH--HHHHHHHHcCcchhcccc
Confidence 77788888 777777754 77777544
No 83
>PRK14758 hypothetical protein; Provisional
Probab=23.13 E-value=95 Score=18.16 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=11.9
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhh
Q 013993 1 MGTKFTAIRVALFLFLILSPAAFA 24 (432)
Q Consensus 1 M~~~~~~~~~~l~~~~l~~~~~~~ 24 (432)
|-+|.+.= ++++.+++|++.++
T Consensus 1 Mv~RYrFE--liLivlIlCalia~ 22 (27)
T PRK14758 1 MVGRYRFE--FILIILILCALIAA 22 (27)
T ss_pred CchHHHHH--HHHHHHHHHHHHHH
Confidence 55566654 34445556665554
No 84
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=22.74 E-value=57 Score=31.60 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.7
Q ss_pred HHhhhcccHHHHHHHHHhhcc
Q 013993 400 NKLRRNETADQILNYVNQLCD 420 (432)
Q Consensus 400 ~~l~~n~t~~~i~~~l~~~C~ 420 (432)
++|.+|-|+||+++||-|+|+
T Consensus 134 nqlvrnGseeQkekylPkl~s 154 (421)
T KOG0141|consen 134 NQLVRNGSEEQKEKYLPKLIS 154 (421)
T ss_pred HHHHhcCCHHHHHhhhhhhhc
Confidence 789999999999999999985
No 85
>PLN03146 aspartyl protease family protein; Provisional
Probab=22.45 E-value=97 Score=31.68 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=26.9
Q ss_pred eeeecc-cCCceEEEE---EEecC-----CCcE------EEEEeecCCCceeeeCC
Q 013993 78 IVALNN-FMDAQYFGE---VSIGT-----PSQT------FTVIFDTGSSNLWVPSA 118 (432)
Q Consensus 78 ~~~l~~-~~~~~Y~~~---i~iGt-----P~q~------~~v~~DTGSs~~WV~~~ 118 (432)
..|+.. .....|+++ |+||. |+.. -.+++|||++.+++|..
T Consensus 269 ~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~ 324 (431)
T PLN03146 269 STPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSD 324 (431)
T ss_pred EcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHH
Confidence 457653 224567765 58884 2221 25899999999999864
No 86
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=22.13 E-value=1.1e+02 Score=28.99 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=28.2
Q ss_pred eeeecccCC----ceEEEE---EEecCC-------CcEEEEEeecCCCceeeeCCCC
Q 013993 78 IVALNNFMD----AQYFGE---VSIGTP-------SQTFTVIFDTGSSNLWVPSAKC 120 (432)
Q Consensus 78 ~~~l~~~~~----~~Y~~~---i~iGtP-------~q~~~v~~DTGSs~~WV~~~~C 120 (432)
.+|+..... ..|.++ |.||.- .....+++|||++.+++|...+
T Consensus 141 ~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~ 197 (295)
T cd05474 141 TLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIV 197 (295)
T ss_pred EEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHH
Confidence 456655322 455554 677742 2346789999999999987543
No 87
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=20.65 E-value=1.7e+02 Score=20.51 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=18.4
Q ss_pred ceEEEcCCCcCcccCHHHHHHH
Q 013993 289 CNAIADSGTSLLAGPTTIITQI 310 (432)
Q Consensus 289 ~~aiiDTGts~~~lP~~~~~~i 310 (432)
..+++|||++...+..+.+...
T Consensus 10 ~~~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 10 VRALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEEEcCCCcccccCHHHHHHc
Confidence 3689999999999998887654
No 88
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=20.34 E-value=93 Score=26.20 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=18.5
Q ss_pred CceEEEcCCCcCcccCHHHHHHH
Q 013993 288 GCNAIADSGTSLLAGPTTIITQI 310 (432)
Q Consensus 288 ~~~aiiDTGts~~~lP~~~~~~i 310 (432)
...++||||+|-.++..+.+.++
T Consensus 32 ~~~vLiDSGAThsFIs~~~a~~~ 54 (135)
T PF08284_consen 32 PASVLIDSGATHSFISSSFAKKL 54 (135)
T ss_pred EEEEEEecCCCcEEccHHHHHhc
Confidence 34689999999999988776653
Done!