Query 013996
Match_columns 432
No_of_seqs 115 out of 158
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 03:36:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a2f_X Exocyst complex compone 97.1 0.23 7.7E-06 49.0 24.7 107 283-422 204-314 (325)
2 3n1e_A Vacuolar protein sortin 94.9 0.96 3.3E-05 39.1 14.8 122 253-418 18-140 (141)
3 3swh_A MUNC13-1, protein UNC-1 89.5 3.4 0.00012 40.8 12.4 72 134-220 63-134 (341)
4 2fji_1 Exocyst complex compone 84.9 33 0.0011 34.1 21.1 161 201-407 136-296 (399)
5 4dnd_A Syntaxin-10, SYN10; str 28.5 1.7E+02 0.0059 24.4 7.3 62 336-404 25-86 (130)
6 4atg_A TAF6; transcription, TF 25.5 2.8E+02 0.0096 24.8 8.6 91 250-347 36-128 (196)
7 1wqg_A Ribosome recycling fact 24.9 3.6E+02 0.012 23.8 9.9 69 318-403 103-173 (185)
8 3clj_A Protein NRD1; CTD-inter 24.4 54 0.0019 28.5 3.4 65 245-309 6-74 (157)
9 1ez3_A Syntaxin-1A; three heli 23.1 1.9E+02 0.0065 23.2 6.5 60 336-403 6-65 (127)
10 3twe_A Alpha4H; unknown functi 22.6 1E+02 0.0034 18.2 3.2 21 346-366 5-25 (27)
11 4gfq_A Ribosome-recycling fact 21.3 4.5E+02 0.016 23.7 9.1 69 318-403 127-197 (209)
12 4fye_A SIDF, inhibitor of grow 20.9 1.8E+02 0.0062 28.7 6.6 82 276-364 49-158 (761)
No 1
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=97.07 E-value=0.23 Score=49.04 Aligned_cols=107 Identities=15% Similarity=0.162 Sum_probs=74.8
Q ss_pred hhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 013996 283 ATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIR 362 (432)
Q Consensus 283 ~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sv~KtEeSL~RLK 362 (432)
.-|=|+-.++|++||.|+..++.=|+.-... -. .||.++++.+..+++++++++..+. |. ++..||+
T Consensus 204 a~yDW~~~~~~~~ps~yi~dli~fL~~~f~s-l~--~LP~~v~~~~~~~a~~his~~l~~~----Ll-----~~~vk~i- 270 (325)
T 2a2f_X 204 SAYDWLLVEPPGIASAFITDMISYLKSTFDS-FA--FKLPHIAQAACRRTFEHIAEKIYSI----MY-----DEDVKQI- 270 (325)
T ss_dssp CCTTCC----CCSCCHHHHHHHHHHHHHHHT-TT--TTSHHHHHHHHHHHHHHHHHHHHHH----HT-----C-------
T ss_pred cccCCCCCCCCCCccHHHHHHHHHHHHHHHH-HH--cCCHHHHHHHHHHHHHHHHHHHHHH----hc-----Ccchhhc-
Confidence 4477988899999999999999999988873 32 6999999999999999999999984 42 2444443
Q ss_pred hcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCCC----CCCccHHHHHHhcc
Q 013996 363 QGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQA----ADIPPYRSLWQCVA 422 (432)
Q Consensus 363 k~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~~lgv~~----~~~~~~~~L~~~V~ 422 (432)
.. + | =.|+-+||.++..-+.+.+++. .=-..|.+|.++|.
T Consensus 271 --n~---~--------a-------v~~~~~Dv~~lE~fa~~~~v~~l~~~~L~~~F~eLrQli~ 314 (325)
T 2a2f_X 271 --ST---G--------A-------LTQINLDLMQCEFFAASEPVPGLKEGELSKYFLRNRQLLD 314 (325)
T ss_dssp --CC---T--------T-------HHHHHHHHHHHHHHHTTCSSSSCCSSTTGGGGHHHHHHHH
T ss_pred --CH---H--------H-------HHHHHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHH
Confidence 11 1 1 2589999999999998866542 22257777777663
No 2
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=94.94 E-value=0.96 Score=39.15 Aligned_cols=122 Identities=18% Similarity=0.266 Sum_probs=79.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHH
Q 013996 253 SSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDA 332 (432)
Q Consensus 253 ~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v 332 (432)
..+...|.+.+|+++.++...+|+ -|-.| +| -||+|..++.+-+.++.+.-.. .||++..+.++..|
T Consensus 18 ~eH~~eI~~KLv~Im~~r~~~~l~---------~Wd~k-~p-vpS~~m~tl~Ke~~kLH~~Ls~--~LP~~~v~~Im~~V 84 (141)
T 3n1e_A 18 HDHIAEISAKLVAIMDSLFDKLLS---------KYEVK-AP-VPSPCFRNICKQMTKMHEAIFD--LLPEEQTQMLFLRI 84 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---------TCCCC-SS-SSCHHHHHHHHHHHHHHHHHTT--TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HhccC-CC-CCCHHHHHHHHHHHHHHHHHHh--hCCHHHHHHHHHHH
Confidence 345556667778888887777765 26655 34 7999999999999999987654 89988776666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc-CCCCCCC
Q 013996 333 ATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAAL-GVQAADI 411 (432)
Q Consensus 333 ~~~vt~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~~l-gv~~~~~ 411 (432)
...|... .-+.+.++- - -+|..+-+.=+.-||++|...+++| |+.-.+.
T Consensus 85 ----f~~fk~~----------l~~~~~~~~--------i--------~~~~G~q~g~v~~Dv~ff~~~L~~L~g~~d~~l 134 (141)
T 3n1e_A 85 ----NASYKLH----------LKKQLSHLN--------V--------INDGGPQNGLVTADVAFYTGNLQALKGLKDLDL 134 (141)
T ss_dssp ----HHHHHHH----------HHHHHHHTT--------C--------CSSSSHHHHHHHHHHHHHHHHHHTSTTCTTCCC
T ss_pred ----HHHHHHH----------HHHHHHHcC--------C--------CCCCcccchHHHHHHHHHHHHhcccCCCCcccc
Confidence 4566653 223444431 1 1222333322678999999999999 5544343
Q ss_pred ccHHHHH
Q 013996 412 PPYRSLW 418 (432)
Q Consensus 412 ~~~~~L~ 418 (432)
. +..+|
T Consensus 135 ~-~~~iw 140 (141)
T 3n1e_A 135 N-MAEIW 140 (141)
T ss_dssp C-GGGGG
T ss_pred c-HHhhc
Confidence 3 34333
No 3
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=89.52 E-value=3.4 Score=40.79 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=50.2
Q ss_pred hhHHHHHHHHhhhccCCccccccchHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCcccccCChhhHHHHHHhHHH
Q 013996 134 KQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINC 213 (432)
Q Consensus 134 ~~s~~l~~~l~~cWs~~Vfl~~L~~rFwkLtLQllsRy~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~l~~Di~~ 213 (432)
.+....|..| =|.|..-...+.-||-+-....+..|..-+......... + ...+.+|.++.+++.
T Consensus 63 ~Q~~~~~~~L--~WpD~~~~~~f~t~l~~~i~~~~~~Y~~~l~~~~~~~~~-~------------e~~~~~Cv~lNNie~ 127 (341)
T 3swh_A 63 NQSFEIIKKL--ECPDPQIVGHYMRRFAKTISNVLLQYADIVSKDFASYCS-K------------EKEKVPCILMNNTQQ 127 (341)
T ss_dssp HHHHHHHHHS--CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-T------------TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-h------------hcccchhhhcccHHH
Confidence 4444555544 478887777788889999999999999888766554221 0 012458888899988
Q ss_pred HHHHHhH
Q 013996 214 LATEVSG 220 (432)
Q Consensus 214 L~~~i~~ 220 (432)
+...+..
T Consensus 128 lR~~L~~ 134 (341)
T 3swh_A 128 LRVQLEK 134 (341)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777766
No 4
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=84.91 E-value=33 Score=34.10 Aligned_cols=161 Identities=7% Similarity=0.029 Sum_probs=91.3
Q ss_pred hhhHHHHHHhHHHHHHHHhHHHHHHHHHhhccCChhhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhcc
Q 013996 201 PDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKG 280 (432)
Q Consensus 201 ~~~lv~l~~Di~~L~~~i~~~~~~~i~~~l~~~~~~~~~~~~~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~ 280 (432)
.+.+++++.|+....+.+.. +...+.+. ...+..+.+...+.+..+.+..+.......+++.+...+...++.
T Consensus 136 ~e~liA~~Nn~~~~~e~~~~-l~~~~~~~---~~~~~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~if~dl~p~~~~--- 208 (399)
T 2fji_1 136 VEYLIAVSNDQMKAADYAVA-ISSKYGKL---VSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQE--- 208 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHTT---SCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTHHHHTT---
T ss_pred HHhhhhhhccHHHHHHHHHH-HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 56789999999877665554 33333322 222222222333444433443333333333333333322222221
Q ss_pred chhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 013996 281 ITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLK 360 (432)
Q Consensus 281 Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sv~KtEeSL~R 360 (432)
+ | |++=.- +.+|..|+.-+..|....+. ++.+...+.++..+.+.+..+|... |.+
T Consensus 209 l---f--t~~W~~---~~~v~~i~~ti~dy~~d~~~--~L~~~~~~~l~~~~~~~~v~~Yl~~--------------l~~ 264 (399)
T 2fji_1 209 I---F--SKTWYM---GSQAQQIADTLDEYLLDIKP--QMNSVLFVNFIDNVIGETIIKFLTA--------------LSF 264 (399)
T ss_dssp T---T--SGGGTT---CCHHHHHHHHHHHHHHHHGG--GSCHHHHHHHHHHHHHHHHHHHHHG--------------GGG
T ss_pred h---C--CchhcC---CcHHHHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHH--------------Hhc
Confidence 1 1 211111 11899999999999988765 7899888889999998888888762 222
Q ss_pred HHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCC
Q 013996 361 IRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQ 407 (432)
Q Consensus 361 LKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~~lgv~ 407 (432)
|.+=+ +. ....-.||..|++.+.....+++-.
T Consensus 265 -~~~~~------------~~--~~~~~~~l~~D~~~l~~~f~~~~~~ 296 (399)
T 2fji_1 265 -EHSFK------------NK--NNKFLEAMKRDFEIFYQLFVKVLDG 296 (399)
T ss_dssp -CCCCC------------CG--GGHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred -CCCCC------------ch--hHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11000 01 3456678888988888888888753
No 5
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=28.53 E-value=1.7e+02 Score=24.39 Aligned_cols=62 Identities=11% Similarity=0.093 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q 013996 336 ITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAAL 404 (432)
Q Consensus 336 vt~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~~l 404 (432)
..+=|+....||..++.+++.-..+..+.+.. ++++ .--+-+-.+-+|.-.++....+++.|
T Consensus 25 ~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~--~~~~-----s~~E~~~~~~EL~~~l~sie~dLeDL 86 (130)
T 4dnd_A 25 LEDPFFVVRGEVQKAVNTARGLYQRWCELLQE--SAAV-----GREELDWTTNELRNGLRSIEWDLEDL 86 (130)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCc-----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999988776641 1111 01233446666666666666555544
No 6
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=25.48 E-value=2.8e+02 Score=24.78 Aligned_cols=91 Identities=22% Similarity=0.338 Sum_probs=60.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhhhccchhhhh--ccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHH
Q 013996 250 KSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYR--MTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNE 327 (432)
Q Consensus 250 ~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR--~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~ 327 (432)
..|..++|-+...|.+.++..- ..+..+..+-+..| .-|+.. .--+|+.+++-|+-+..-.. .+.+...++
T Consensus 36 ~gL~~LlPyf~~fI~~~v~~nl-~~l~~L~~lm~~~~ALl~N~~l--~lepYlH~LipsvLtCll~k----~l~~~~LRd 108 (196)
T 4atg_A 36 SGLQQLVPYFIQHISELILKSF-KEAEVLKTCIALYFSLIKNKHV--FIDPYLHQILPSLLTCVIGK----SIVDDDVRK 108 (196)
T ss_dssp SSCTTTHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHCTTC--CCGGGHHHHHHHHHHHHHCT----TCCCHHHHH
T ss_pred CChhhhHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHcCCCC--ChHHHHHHHHHHHHHHHHhc----ccCHHHHHH
Confidence 4456788888877777765531 23333333333333 235543 55789999999999998754 345547889
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013996 328 LLLDAATQITSRYHELAAEL 347 (432)
Q Consensus 328 ~~~~v~~~vt~~Y~~~v~ev 347 (432)
....++..++.+|...-..+
T Consensus 109 ~AA~lL~~I~~~~~~~y~~L 128 (196)
T 4atg_A 109 MSADIVKYIYDTYSRSYKTL 128 (196)
T ss_dssp HHHHHHHHHHHHHTTTSTTH
T ss_pred HHHHHHHHHHHHhCccCchH
Confidence 99999999999997644433
No 7
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=24.92 E-value=3.6e+02 Score=23.84 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=35.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHH--HHHHHH
Q 013996 318 TYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQ--LFLDIQ 395 (432)
Q Consensus 318 ~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~Q--L~LDv~ 395 (432)
|.++.|.+.+++.. + ..|.+.++.-+..+|+ +....+|+..+ +..+|.||-=+.| +.-=.+
T Consensus 103 P~lTeErRkelvK~-~----k~~~E~aKvaiRniRr--da~~~lKk~~K----------~~~iseD~~k~~e~~iQkltd 165 (185)
T 1wqg_A 103 PQLTEERRRELVKQ-A----KHKGEEAKVSVRNIRR--KAMEELHRIRK----------EGEAGEDEVGRAEKDLDKTTH 165 (185)
T ss_dssp CCCCHHHHHHHHHH-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHH----------TTSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-H----HHHHHHHHHHHHHHHH--HHHHHHHHhhh----------cCCCChhHHHHHHHHHHHHHH
Confidence 46678877776643 3 3444444445677753 44444444333 1136666644433 333345
Q ss_pred HHHHHHHh
Q 013996 396 EYGRSLAA 403 (432)
Q Consensus 396 ~f~~~~~~ 403 (432)
.|..++.+
T Consensus 166 ~~i~~id~ 173 (185)
T 1wqg_A 166 QYVTQIDE 173 (185)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666543
No 8
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=24.37 E-value=54 Score=28.55 Aligned_cols=65 Identities=11% Similarity=0.098 Sum_probs=45.3
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhccc-hhhhhccCCCCCCC--CCcc-hHhhhHhHHH
Q 013996 245 ILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGI-TATYRMTNKPLPVR--HSPY-VSGVLRPLKT 309 (432)
Q Consensus 245 l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~I-p~~YR~Tnk~~Pt~--~S~Y-V~~il~PL~~ 309 (432)
++..+++|.++.|.++..-+..|+.-|.++.+.-+.| ...|+.-.|.+|+. |+-| |++|++-.+.
T Consensus 6 f~~~L~sL~~lkp~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~ 74 (157)
T 3clj_A 6 FVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLD 74 (157)
T ss_dssp HHHHHHGGGGCSSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHH
Confidence 4455566666668899999999999999998887766 56777665544443 2444 4777766543
No 9
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=23.08 E-value=1.9e+02 Score=23.20 Aligned_cols=60 Identities=8% Similarity=0.105 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 013996 336 ITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAA 403 (432)
Q Consensus 336 vt~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~~ 403 (432)
..+.|+..|.++-..+.+.+.-+.+|++.......+ +..++.++.||--++..+...+..
T Consensus 6 ~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~--------~~~~~~~~~~l~~l~~~i~~~a~~ 65 (127)
T 1ez3_A 6 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILAS--------PNPDEKTKEELEELMSDIKKTANK 65 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHH
Confidence 356788888999999999999999998877531111 223556777776666655554443
No 10
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=22.62 E-value=1e+02 Score=18.21 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=12.3
Q ss_pred HHHHHHHHhHHHHHHHHhccc
Q 013996 346 ELISVARKTESSLLKIRQGAQ 366 (432)
Q Consensus 346 evL~sv~KtEeSL~RLKk~~~ 366 (432)
|+-.......|-|++|||+-+
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 333334455677888877644
No 11
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=21.30 E-value=4.5e+02 Score=23.73 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=36.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHH--HHHHHHH
Q 013996 318 TYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICM--QLFLDIQ 395 (432)
Q Consensus 318 ~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~--QL~LDv~ 395 (432)
|.++.|.+++++. ++ ..|.+.++--+..+|+ +....+|+..+ +..+|.||.=+. ++.-=.+
T Consensus 127 P~LTeErRkelvK-~a----k~~~E~aKvaIRniRr--da~~~lKk~~K----------~~~isEDe~k~~e~eiQklTd 189 (209)
T 4gfq_A 127 PALTEERRRDLVK-VV----KKYAEEAKVAVRNVRR--DGNDDLKKLEK----------AGEITEDDLRGYTEDIQKETD 189 (209)
T ss_dssp CBCCHHHHHHHHH-HH----HHHHHHHHHHHHHHHH--HHHHHHHHHHH----------HTSSCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHH-HH----HHHHHHHHHHHHHHHH--HHHHHHHHhcc----------cCCCCHHHHHHHHHHHHHHHH
Confidence 4677887777663 33 4455555556777775 44444444433 113676655443 2333344
Q ss_pred HHHHHHHh
Q 013996 396 EYGRSLAA 403 (432)
Q Consensus 396 ~f~~~~~~ 403 (432)
.|...+.+
T Consensus 190 ~~i~~iD~ 197 (209)
T 4gfq_A 190 KYIAKVDE 197 (209)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 12
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=20.88 E-value=1.8e+02 Score=28.68 Aligned_cols=82 Identities=16% Similarity=0.359 Sum_probs=58.5
Q ss_pred hhhccchhhhhccCCCCCCCC------CcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHH----
Q 013996 276 RQLKGITATYRMTNKPLPVRH------SPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAA---- 345 (432)
Q Consensus 276 k~v~~Ip~~YR~Tnk~~Pt~~------S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~---- 345 (432)
++|--|.++|-.-.||+...| -.|+.+++..-+++.+..+.+ .. .+-...+++....|..-++
T Consensus 49 kqvvvvnsqydkhgrpvtgqpdviqeannyidnlvaaakslidkdkkg---ek----dlrknaidemaktfkksisetip 121 (761)
T 4fye_A 49 KQVVVVNSQYDKHGRPVTGQPDVIQEANNYIDNLVAAAKSLIDKDKKG---EK----DLRKNAIDEMAKTFKKSISETIP 121 (761)
T ss_dssp CEEEEEECCBCTTSCBCSSCCBHHHHHHHHHHHHHHHHHHHHHHSSSS---CH----HHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ceEEEEeccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccccc---hh----hHHHhHHHHHHHHHHhhhhhhCC
Confidence 456667899999999988877 589999999999999877554 22 2334445555566655444
Q ss_pred ------------------HHHHHHHHhHHHHHHHHhc
Q 013996 346 ------------------ELISVARKTESSLLKIRQG 364 (432)
Q Consensus 346 ------------------evL~sv~KtEeSL~RLKk~ 364 (432)
|.|....|.|-||..+-+.
T Consensus 122 sdkakadlfsskkssankdfleqlakvegslqqftqa 158 (761)
T 4fye_A 122 SDKAKADLFSSKKSSANKDFLEQLAKVEGSLQQFTQA 158 (761)
T ss_dssp TTTSBCCTTSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhccccccchHHHHHHHHhhhhHHHHHHH
Confidence 4566677788888777654
Done!