BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013997
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 265 bits (676), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 147/436 (33%), Positives = 235/436 (53%), Gaps = 21/436 (4%)
Query: 11 LTVKQGEPTLVLPAEETPKGLYFLNNLDQNIAVI-VRTCYCFKSDSKGNEDAAEVVKNAL 69
+ ++ E T+V PA+ETP + +N+D + + Y ++ N A+V+K+AL
Sbjct: 6 MKIEVKESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLKDAL 65
Query: 70 SKLLVQCYPLAGRLTISSAGKLIVNCTGEGAVFVEAEASFGIEDIGDLTKPDPLILGKLV 129
S+ LV YP+AGRL G++ + C GEG +FVEAE+ ++D GD L L +L+
Sbjct: 66 SRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPT--LELRRLI 123
Query: 130 YEIPGAQHILQIPPLVVQVTKFKCGAFVIGMSMNHCMLDGLAAMEFMNSWGETARGLPLK 189
+ +Q I LV+QVT FKCG +G+ M H DG + + F+NSW + ARGL +
Sbjct: 124 PAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVT 183
Query: 190 VRPVLDRTILKSRDPTKIEFPHPEFDEIEDVSNTNKLYEE----EMLYRYFCFGPEKLEQ 245
+ P +DRT+L++RDP + +F H E+ ++ + + E F E++
Sbjct: 184 LPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISA 243
Query: 246 LKQIAMQDKVLNKCTTFEALSAFVWRARCEALGMQPDQQTKLLFAVDGRSRFEPPLPEGF 305
LK + +D +++E L+ VWR C+A G++ DQ TKL A DGR+R P LP G+
Sbjct: 244 LKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGY 303
Query: 306 FGNGIVLTYSLSKAGELLTNPLSFTVGLVQNAVSMVTDSYMRSAIDYFEITRARPSLAA- 364
FGN I ++ AG+L P+ + + +A++ + + Y+RSA+DY E+ +P L A
Sbjct: 304 FGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLEL---QPDLKAL 360
Query: 365 ----------TMLITTWYRLSFHTIDFGWGEPIFSGPVALPEKEVILFLSHGTQRKNINV 414
+ IT+W RL H DFGWG PIF GP + + + L T +++V
Sbjct: 361 VRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSV 420
Query: 415 LLGLPASAMKIFEQLM 430
+ L MK+F+ +
Sbjct: 421 AISLQGEHMKLFQSFL 436
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 264 bits (675), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 147/436 (33%), Positives = 235/436 (53%), Gaps = 21/436 (4%)
Query: 11 LTVKQGEPTLVLPAEETPKGLYFLNNLDQNIAVI-VRTCYCFKSDSKGNEDAAEVVKNAL 69
+ ++ E T+V PA+ETP + +N+D + + Y ++ N A+V+K+AL
Sbjct: 3 MKIEVKESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLKDAL 62
Query: 70 SKLLVQCYPLAGRLTISSAGKLIVNCTGEGAVFVEAEASFGIEDIGDLTKPDPLILGKLV 129
S+ LV YP+AGRL G++ + C GEG +FVEAE+ ++D GD L L +L+
Sbjct: 63 SRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPT--LELRRLI 120
Query: 130 YEIPGAQHILQIPPLVVQVTKFKCGAFVIGMSMNHCMLDGLAAMEFMNSWGETARGLPLK 189
+ +Q I LV+QVT FKCG +G+ M H DG + + F+NSW + ARGL +
Sbjct: 121 PAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVT 180
Query: 190 VRPVLDRTILKSRDPTKIEFPHPEFDEIEDVSNTNKLYEE----EMLYRYFCFGPEKLEQ 245
+ P +DRT+L++RDP + +F H E+ + + + + E F E++
Sbjct: 181 LPPFIDRTLLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSIFKLTREQISA 240
Query: 246 LKQIAMQDKVLNKCTTFEALSAFVWRARCEALGMQPDQQTKLLFAVDGRSRFEPPLPEGF 305
LK + +D +++E L+ VWR C+A G++ DQ TKL A DGR+R P LP G+
Sbjct: 241 LKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGY 300
Query: 306 FGNGIVLTYSLSKAGELLTNPLSFTVGLVQNAVSMVTDSYMRSAIDYFEITRARPSLAA- 364
FGN I ++ AG+L P+ + + +A++ + + Y+RSA+DY E+ +P L A
Sbjct: 301 FGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLEL---QPDLKAL 357
Query: 365 ----------TMLITTWYRLSFHTIDFGWGEPIFSGPVALPEKEVILFLSHGTQRKNINV 414
+ IT+W RL H DFGWG PIF GP + + + L T +++V
Sbjct: 358 VRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSV 417
Query: 415 LLGLPASAMKIFEQLM 430
+ L MK+F+ +
Sbjct: 418 AISLQGEHMKLFQSFL 433
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 260 bits (665), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 146/436 (33%), Positives = 234/436 (53%), Gaps = 21/436 (4%)
Query: 11 LTVKQGEPTLVLPAEETPKGLYFLNNLDQNIAVI-VRTCYCFKSDSKGNEDAAEVVKNAL 69
+ ++ E T+V PA+ETP + +N+D + + Y ++ N A+V+K+AL
Sbjct: 6 MKIEVKESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLKDAL 65
Query: 70 SKLLVQCYPLAGRLTISSAGKLIVNCTGEGAVFVEAEASFGIEDIGDLTKPDPLILGKLV 129
S+ LV YP+AGRL G++ + C GEG +FVEAE+ ++D GD L L +L+
Sbjct: 66 SRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPT--LELRRLI 123
Query: 130 YEIPGAQHILQIPPLVVQVTKFKCGAFVIGMSMNHCMLDGLAAMEFMNSWGETARGLPLK 189
+ +Q I LV+QVT FK G +G+ M H DG + + F+NSW + ARGL +
Sbjct: 124 PAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVT 183
Query: 190 VRPVLDRTILKSRDPTKIEFPHPEFDEIEDVSNTNKLYEE----EMLYRYFCFGPEKLEQ 245
+ P +DRT+L++RDP + +F H E+ ++ + + E F E++
Sbjct: 184 LPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISA 243
Query: 246 LKQIAMQDKVLNKCTTFEALSAFVWRARCEALGMQPDQQTKLLFAVDGRSRFEPPLPEGF 305
LK + +D +++E L+ VWR C+A G++ DQ TKL A DGR+R P LP G+
Sbjct: 244 LKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGY 303
Query: 306 FGNGIVLTYSLSKAGELLTNPLSFTVGLVQNAVSMVTDSYMRSAIDYFEITRARPSLAA- 364
FGN I ++ AG+L P+ + + +A++ + + Y+RSA+DY E+ +P L A
Sbjct: 304 FGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLEL---QPDLKAL 360
Query: 365 ----------TMLITTWYRLSFHTIDFGWGEPIFSGPVALPEKEVILFLSHGTQRKNINV 414
+ IT+W RL H DFGWG PIF GP + + + L T +++V
Sbjct: 361 VRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSV 420
Query: 415 LLGLPASAMKIFEQLM 430
+ L MK+F+ +
Sbjct: 421 AISLQGEHMKLFQSFL 436
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 190/405 (46%), Gaps = 52/405 (12%)
Query: 20 LVLPAEETPKGL--YFLNNLDQNIAVIVRTCYC-----FKSDSKGNEDAAEV---VKNAL 69
L+LP+ TP+ L Y +++LDQ ++ TC+ + + N D A+ +K +L
Sbjct: 12 LILPSSPTPQSLKCYKISHLDQ----LLLTCHIPFILFYPNPLDSNLDPAQTSQHLKQSL 67
Query: 70 SKLLVQCYPLAGRLTISSAGKLIVNCTGEGAVFVEA----EASFGIEDIGDLTKPDPLIL 125
SK+L YPLAGR+ ++S+ V+C G FVEA + S I+++ +L K D L
Sbjct: 68 SKVLTHFYPLAGRINVNSS----VDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQY-L 122
Query: 126 GKLVYEIPGAQ-HILQIPPLVVQVTKFKCGAFVIGMSMNHCMLDGLAAMEFMNSWGETAR 184
Y PG + + + PL V+++ F+CG IG++++H + D L+ F+N+W T R
Sbjct: 123 PSAAY--PGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCR 180
Query: 185 GLPLKVRPVLDRTILKSRDPTKIEFPHPEFDEIEDVSNTNKLYEEEMLYRYFCFGPEKLE 244
G V P D L +R F +++ + + +E ++ + F F EK+
Sbjct: 181 GETEIVLPNFD---LAAR----------HFPPVDNTPSPELVPDENVVMKRFVFDKEKIG 227
Query: 245 QLKQIAMQDKVLNKCTTFEALSAFVWRARCEALGMQPDQQTKLLF--AVDGRSRFEPPLP 302
L+ A + + + A++W+ + + + K + AV+ RSR PPLP
Sbjct: 228 ALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLP 287
Query: 303 EGFFGNGIVLTYSLSKAGELLTNPLSFTVGLVQNAVSMVTDSY----MRSAIDYFEITRA 358
GN L ++ A +G ++ ++ D + ++ +E+
Sbjct: 288 HYAMGNIATLLFAAVDAE--WDKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCLYELEPQ 345
Query: 359 RPSLAATMLITTWYRLSFHTIDFGWGEPIFSGPVALPEKEVILFL 403
+ T+W RL F+ +DFGWG+P+ + P++ L +
Sbjct: 346 E-----LLSFTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLM 385
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 94/416 (22%), Positives = 164/416 (39%), Gaps = 62/416 (14%)
Query: 55 SKGNEDAAEVVKNALSKLLVQCYPLAGRLTISSAGKL---IVNCTGEGAVFVEAEASFGI 111
S+ E +K++LS L YP G+L + A I G+ AE +
Sbjct: 55 SQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNL-- 112
Query: 112 EDIGDLTKPDPLILGKLVYEIP------GAQHILQIPPLVVQVTKFKCGAFVIGMSMNHC 165
D+ +LT P K +P ++IP VQVT F IG++ +HC
Sbjct: 113 -DLNELTGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHC 171
Query: 166 MLDGLAAMEFMNSWGETARG-------LPLKVRPVLDRTILKSRDPTKIEFPHPEFDEI- 217
+ D F+ +W AR L RP+ DR I +P DE
Sbjct: 172 LGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRII-----------KYPMLDEAY 220
Query: 218 ----------EDVSNTNKLYEEEMLYRYFCFGPEKLEQLK-QIAMQDKVLNKCTTFEALS 266
ED + + L F + QLK ++ Q L ++F
Sbjct: 221 LKRAKVESFNEDYVTQSLAGPSDKLRATFILTRAVINQLKDRVLAQLPTLEYVSSFTVAC 280
Query: 267 AFVWRARCEALGMQPDQQTKLLFAVDGRSRFEPPLPEGFFGNGIVLTYSLSKAGELLTNP 326
A++W ++ + D+ F +D R+R +PP+P +FGN + +++K TN
Sbjct: 281 AYIWSCIAKS---RNDKLQLFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAK-----TNL 332
Query: 327 LSFTVGLVQNAVSMVTDSYMRSAIDYFEITRARPSLAATMLIT-------TWY----RLS 375
L G + A ++ ++ ++ DY + + L++ TW +L
Sbjct: 333 LIGKEGFI-TAAKLIGENLHKTLTDYKDGVLKDDMESFNDLVSEGMPTTMTWVSGTPKLR 391
Query: 376 FHTIDFGWGEPIFSGPVALPEKEVILFLSHGTQRKNINVLLGLPASAMKIFEQLME 431
F+ +DFGWG+P V++ I S +++ + + + A+ M+ F + +
Sbjct: 392 FYDMDFGWGKPKKLETVSIDHNGAISINSCKESNEDLEIGVCISATQMEDFVHIFD 447
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 93/416 (22%), Positives = 162/416 (38%), Gaps = 62/416 (14%)
Query: 55 SKGNEDAAEVVKNALSKLLVQCYPLAGRLTISSAGKL---IVNCTGEGAVFVEAEASFGI 111
S+ E +K++LS L YP G+L + A I G+ AE +
Sbjct: 55 SQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNL-- 112
Query: 112 EDIGDLTKPDPLILGKLVYEIP------GAQHILQIPPLVVQVTKFKCGAFVIGMSMNHC 165
D+ +LT P K +P ++IP VQVT F IG++ +HC
Sbjct: 113 -DLNELTGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHC 171
Query: 166 MLDGLAAMEFMNSWGETARG-------LPLKVRPVLDRTILKSRDPTKIEFPHPEFDEI- 217
+ D F+ +W AR L RP+ DR I +P DE
Sbjct: 172 LGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRII-----------KYPXLDEAY 220
Query: 218 ----------EDVSNTNKLYEEEMLYRYFCFGPEKLEQLK-QIAMQDKVLNKCTTFEALS 266
ED + + L F + QLK ++ Q L ++F
Sbjct: 221 LKRAKVESFNEDYVTQSLAGPSDKLRATFILTRAVINQLKDRVLAQLPTLEYVSSFTVAC 280
Query: 267 AFVWRARCEALGMQPDQQTKLLFAVDGRSRFEPPLPEGFFGNGIVLTYSLSKAGELLTNP 326
A++W ++ + D+ F +D R+R +PP+P +FGN + +++K TN
Sbjct: 281 AYIWSCIAKS---RNDKLQLFGFPIDRRARXKPPIPTAYFGNCVGGCAAIAK-----TNL 332
Query: 327 LSFTVGLVQNAVSMVTDSYMRSAIDYFEITRARPSLAATMLIT-------TWY----RLS 375
L G + A ++ ++ ++ DY + + L++ TW +L
Sbjct: 333 LIGKEGFI-TAAKLIGENLHKTLTDYKDGVLKDDXESFNDLVSEGXPTTXTWVSGTPKLR 391
Query: 376 FHTIDFGWGEPIFSGPVALPEKEVILFLSHGTQRKNINVLLGLPASAMKIFEQLME 431
F+ DFGWG+P V++ I S +++ + + + A+ + F + +
Sbjct: 392 FYDXDFGWGKPKKLETVSIDHNGAISINSCKESNEDLEIGVCISATQXEDFVHIFD 447
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 118/288 (40%), Gaps = 54/288 (18%)
Query: 131 EIPGAQHILQIPPLVVQVTKFKCGAFVIGMSMNHCMLDGLAAMEFMNSW------GETAR 184
+ PG Q P L +QVT F IG + +H DG ++F+ +W G +
Sbjct: 135 DAPGVQ---LAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQ 191
Query: 185 GLPLKVRPVLDRTILKSRDPTKIEFPHPEFDEIEDVSNTNKLYEEEMLYRYFCFGPEKLE 244
L + P DR+++K DP + + N K Y+ P+K+
Sbjct: 192 FLANEFIPFYDRSVIK--DPNGVG---------XSIWNEXKKYKHXXKXSDVVTPPDKVR 240
Query: 245 -----------QLKQIAMQDK-VLNKCTTFEALSAFVWRARCE---ALGMQPDQQTKLLF 289
+LK + + + L T+F A+VW + A G + D+ F
Sbjct: 241 GTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGXEFF 300
Query: 290 --AVDGRSRFEPPLPEGFFGNGIVLTYSLSKAGELLTNP-LSFTVGLVQNAVS------- 339
A D R++F PPLP +FGN +V + ++ +L + V L+ A+
Sbjct: 301 GCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRXKDEE 360
Query: 340 -MVTDSYMRSAIDYFEITRARPSLAATMLITTWYRLSFHTIDFGWGEP 386
+++ S+ + ++ A+ SL+ + +L + DFGWG P
Sbjct: 361 WILSGSWFKE----YDKVDAKRSLS----VAGSPKLDLYAADFGWGRP 400
>pdb|2RKV|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And T-2 Mycotoxin
pdb|3B2S|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And Deoxynivalenol
pdb|3B30|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Ethyl Coenzyme A
Length = 451
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 25/170 (14%)
Query: 233 YRYFCFGPEKLEQLKQIAMQDKVLNKCTTF----EALSAFVW----RARCEAL-GMQPDQ 283
+ +F F P+ + +LK A K L+ T F +ALSAF+W R R E + G P
Sbjct: 231 WAFFTFSPKAMSELKDAAT--KTLDASTKFVSTDDALSAFIWKSASRVRLERIDGSAP-- 286
Query: 284 QTKLLFAVDGRSRFEPPLPEGFFGNGIVLTYSLSKAGELLTNPLSFTVGLVQNAVSMVT- 342
T+ AVD R + + G +TY S GE+ L T +++ + +
Sbjct: 287 -TEFCRAVDARPAMG--VSNNYPGLLQNMTYHNSTIGEIANESLGATASRLRSELDPASM 343
Query: 343 -------DSYMRSAIDYFEIT-RARPSLAATMLITTWYRLSFHTIDFGWG 384
+Y+ + D ++ A + ++++++W ++ DFG G
Sbjct: 344 RQRTRGLATYLHNNPDKSNVSLTADADPSTSVMLSSWAKVGLWDYDFGLG 393
>pdb|2ZBA|A Chain A, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|B Chain B, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|C Chain C, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|D Chain D, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
Length = 459
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 233 YRYFCFGPEKLEQLKQIAMQ--DKVLNKCTTFEALSAFVWR--ARCEALGMQPDQQTKLL 288
+ +F F P+ L +LK A + D +T +ALSAF+W+ +R + T+
Sbjct: 239 WAFFSFTPKALSELKDAATKTLDASSKFVSTDDALSAFIWQSTSRVRLARLDASTPTEFC 298
Query: 289 FAVDGRSRFEPPLPEGFFGN--GIV--LTYSLSKAGELLTNPLSFTVGLVQNAV------ 338
AVD R P G G++ TY S E+ PL T +++ +
Sbjct: 299 RAVDXRG------PXGVSSTYPGLLQNXTYHDSTVAEIANEPLGATASRLRSELNSDRLR 352
Query: 339 --SMVTDSYMRSAIDYFEIT-RARPSLAATMLITTWYRLSFHTIDFGWG 384
+ +Y D ++ A + ++++ +++W ++ DFG+G
Sbjct: 353 RRTQALATYXHGLPDKSSVSLTADANPSSSIXLSSWAKVGCWEYDFGFG 401
>pdb|2RKT|A Chain A, Crystal Sructure Of Apo F. Graminearum Tri101
Length = 452
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 25/170 (14%)
Query: 233 YRYFCFGPEKLEQLKQIAMQDKVLNKCTTF----EALSAFVW----RARCEAL-GMQPDQ 283
+ +F F P+ +LK A K L+ T F +ALSAF+W R R E + G P
Sbjct: 232 WAFFTFSPKAXSELKDAAT--KTLDASTKFVSTDDALSAFIWKSASRVRLERIDGSAP-- 287
Query: 284 QTKLLFAVDGRSRFEPPLPEGFFGNGIVLTYSLSKAGELLTNPLSFTVGLVQNAVSMVTD 343
T+ AVD R + + G TY S GE+ L T +++ + +
Sbjct: 288 -TEFCRAVDARPAXG--VSNNYPGLLQNXTYHNSTIGEIANESLGATASRLRSELDPASX 344
Query: 344 --------SYMRSAIDYFEIT-RARPSLAATMLITTWYRLSFHTIDFGWG 384
+Y+ + D ++ A + ++ +++W ++ DFG G
Sbjct: 345 RQRTRGLATYLHNNPDKSNVSLTADADPSTSVXLSSWAKVGLWDYDFGLG 394
>pdb|2ZAL|B Chain B, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
pdb|2ZAL|D Chain D, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
Length = 137
Score = 31.6 bits (70), Expect = 0.95, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 54 DSKGNEDAAEVVKNALSKL--LVQCYPLAGRLTISSAGKLIVNCTGEGAVFVEAEASFGI 111
D GN AA +KL V PL G ++ + V+CTG G VF+ A A++ I
Sbjct: 8 DLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRALAAYDI 67
Query: 112 EDIGD 116
+ D
Sbjct: 68 AALMD 72
>pdb|1JN9|B Chain B, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1JN9|D Chain D, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1K2X|B Chain B, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
pdb|1K2X|D Chain D, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
Length = 143
Score = 31.6 bits (70), Expect = 0.96, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 54 DSKGNEDAAEVVKNALSKL--LVQCYPLAGRLTISSAGKLIVNCTGEGAVFVEAEASFGI 111
D GN AA +KL V PL G ++ + V+CTG G VF+ A A++ I
Sbjct: 8 DLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRALAAYDI 67
Query: 112 EDIGD 116
+ D
Sbjct: 68 AALMD 72
>pdb|2ZAK|A Chain A, Orthorhombic Crystal Structure Of Precursor E. Coli
Isoaspartyl PeptidaseL-Asparaginase (Ecaiii) With
Active-Site T179a Mutation
pdb|2ZAK|B Chain B, Orthorhombic Crystal Structure Of Precursor E. Coli
Isoaspartyl PeptidaseL-Asparaginase (Ecaiii) With
Active-Site T179a Mutation
pdb|3C17|A Chain A, Hexagonal Crystal Structure Of Precursor E. Coli
Isoaspartyl Peptidase/l-asparaginase (ecaiii) With
Active-site T179a Mutation
pdb|3C17|B Chain B, Hexagonal Crystal Structure Of Precursor E. Coli
Isoaspartyl Peptidase/l-asparaginase (ecaiii) With
Active-site T179a Mutation
Length = 320
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 54 DSKGNEDAAEVVKNALSKL--LVQCYPLAGRLTISSAGKLIVNCTGEGAVFVEAEASFGI 111
D GN AA +KL V PL G ++ + V+CTG G VF+ A A++ I
Sbjct: 185 DLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRALAAYDI 244
Query: 112 EDIGD 116
+ D
Sbjct: 245 AALMD 249
>pdb|1T3M|B Chain B, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
pdb|1T3M|D Chain D, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
Length = 147
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 54 DSKGNEDAAEVVKNALSKL--LVQCYPLAGRLTISSAGKLIVNCTGEGAVFVEAEASFGI 111
D GN AA +KL V PL G ++ + V+CTG G VF+ A A++ I
Sbjct: 8 DLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRALAAYDI 67
Query: 112 E---DIGDLT 118
D G L+
Sbjct: 68 AALMDYGGLS 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,165,174
Number of Sequences: 62578
Number of extensions: 496473
Number of successful extensions: 1069
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1034
Number of HSP's gapped (non-prelim): 19
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)