Query 013997
Match_columns 432
No_of_seqs 148 out of 1218
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 03:37:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g22_A Hydroxycinnamoyl-COA sh 100.0 5E-86 1.7E-90 668.1 43.7 420 10-431 5-437 (439)
2 2xr7_A Malonyltransferase; xen 100.0 9.5E-76 3.3E-80 595.8 30.9 414 12-431 1-447 (453)
3 2e1v_A Acyl transferase; BAHD 100.0 1.6E-75 5.4E-80 594.2 28.2 416 7-431 1-447 (454)
4 2bgh_A Vinorine synthase; VS, 100.0 1.9E-74 6.4E-79 580.4 34.1 395 11-431 3-412 (421)
5 2rkv_A Trichothecene 3-O-acety 100.0 7.3E-66 2.5E-70 523.1 34.7 393 31-429 4-440 (451)
6 1q9j_A PAPA5, polyketide synth 99.2 5.8E-09 2E-13 103.5 26.8 285 29-340 5-313 (422)
7 2jgp_A Tyrocidine synthetase 3 98.9 8.7E-07 3E-11 90.5 26.9 280 29-340 94-400 (520)
8 4hvm_A Tlmii; PSI-biology, mid 98.7 4.2E-07 1.4E-11 92.2 19.6 289 29-340 11-327 (493)
9 1l5a_A Amide synthase, VIBH; n 98.7 2.2E-07 7.7E-12 92.5 16.2 251 60-340 33-304 (436)
10 2xhg_A Tyrocidine synthetase A 98.6 1.6E-05 5.3E-10 79.8 24.4 293 29-342 15-337 (466)
11 2vsq_A Surfactin synthetase su 98.4 4.6E-05 1.6E-09 86.4 25.3 258 60-340 47-327 (1304)
12 3fot_A 15-O-acetyltransferase; 98.3 0.00023 7.9E-09 72.3 26.3 268 58-340 71-399 (519)
13 3cla_A Type III chloramphenico 75.5 1.9 6.5E-05 37.9 3.4 44 141-184 164-209 (213)
14 2i9d_A Chloramphenicol acetylt 74.5 2.1 7.1E-05 37.8 3.4 28 156-183 189-216 (217)
15 1q23_A Chloramphenicol acetylt 74.1 2.2 7.4E-05 37.7 3.4 44 141-184 168-213 (219)
16 3b8k_A PDCE2;, dihydrolipoylly 72.0 2.7 9.2E-05 37.7 3.6 29 156-184 204-232 (239)
17 1scz_A E2, dihydrolipoamide su 70.1 3 0.0001 37.2 3.4 30 156-185 196-225 (233)
18 1dpb_A Dihydrolipoyl-transacet 70.1 3 0.0001 37.5 3.4 29 156-184 208-236 (243)
19 3rqc_A Probable lipoamide acyl 69.5 2.7 9.1E-05 37.3 2.9 30 156-185 187-216 (224)
20 2ii3_A Lipoamide acyltransfera 68.3 3.4 0.00012 37.6 3.4 29 156-184 224-252 (262)
21 3mae_A 2-oxoisovalerate dehydr 62.4 5.2 0.00018 36.2 3.4 30 156-185 210-239 (256)
22 3l60_A Branched-chain alpha-ke 61.4 5.6 0.00019 35.8 3.4 30 156-185 205-234 (250)
23 4hhu_A OR280; engineered prote 56.7 17 0.00058 28.1 4.8 46 46-97 84-130 (170)
24 4hhu_A OR280; engineered prote 53.5 17 0.00058 28.1 4.4 44 47-96 4-48 (170)
25 2kl8_A OR15; structural genomi 53.0 40 0.0014 22.9 5.7 38 60-97 10-48 (85)
26 3dva_I Dihydrolipoyllysine-res 42.2 5.3 0.00018 39.1 0.0 30 156-185 391-420 (428)
27 3qoq_A Alginate and motility r 41.2 77 0.0026 22.1 5.9 47 229-279 17-63 (69)
28 2xl1_A Arginine attenuator pep 39.8 26 0.00088 18.5 2.4 18 257-274 6-23 (26)
29 1x93_A Hypothetical protein HP 39.6 73 0.0025 20.4 6.0 23 232-254 2-24 (55)
30 1baz_A ARC repressor; transcri 33.4 99 0.0034 20.1 6.1 43 230-276 6-48 (53)
31 2an7_A Protein PARD; bacterial 27.4 97 0.0033 22.2 4.5 35 231-269 1-35 (83)
32 2k9i_A Plasmid PRN1, complete 25.6 1.3E+02 0.0045 19.0 6.2 42 230-275 8-49 (55)
33 1p94_A Plasmid partition prote 24.9 1.2E+02 0.004 21.6 4.7 41 229-273 32-72 (76)
34 2k1o_A Putative; repressor, tr 23.9 1.6E+02 0.0056 19.5 6.1 41 229-277 13-53 (66)
35 2cpg_A REPA protein, transcrip 23.0 1.3E+02 0.0045 18.1 5.2 36 233-272 4-39 (45)
36 2xt6_A 2-oxoglutarate decarbox 21.6 57 0.0019 35.9 3.6 30 156-185 192-221 (1113)
37 1apy_B Aspartylglucosaminidase 20.1 2.5E+02 0.0084 22.5 6.3 47 60-106 76-127 (141)
No 1
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A
Probab=100.00 E-value=5e-86 Score=668.09 Aligned_cols=420 Identities=34% Similarity=0.640 Sum_probs=366.1
Q ss_pred eeeEEEecceEeeCCCCCCCceeeCCcCcccccc-ceeEEEEecCCCCCChhHHHHHHHHHHhhhhhcccCCeEEeecCC
Q 013997 10 ELTVKQGEPTLVLPAEETPKGLYFLNNLDQNIAV-IVRTCYCFKSDSKGNEDAAEVVKNALSKLLVQCYPLAGRLTISSA 88 (432)
Q Consensus 10 ~~~v~~~~~~~V~P~~~~~~~~~~Ls~lD~~~~~-~~~~~~~f~~~~~~~~~~~~~L~~sL~~~l~~~p~LaGrl~~~~~ 88 (432)
+|+|+|.++++|+|+.+||.+.++||+||+.++. |++.++||+.++.+....+++||+||+++|.+||+|||||+.+++
T Consensus 5 ~~~V~i~~~~~V~P~~~tp~~~~~LS~lD~~~~~~~~~~~~~y~~~~~~~~~~~~~Lk~sLs~~L~~f~plAGRl~~~~~ 84 (439)
T 4g22_A 5 SMKIEVKESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLKDALSRALVPFYPMAGRLKRDED 84 (439)
T ss_dssp -CCEEEEEEEEECCSSCCCCCEECCCHHHHSCCTTCCCEEEEECCCSCTTTTCHHHHHHHHHHHTTTTGGGGCEEEECTT
T ss_pred ceEEEEeeeEEEeCCCCCCCCeecCChhHhCccccceeeEEEEcCCCCccccHHHHHHHHHHHHHhhccccceeeeeCCC
Confidence 4789999999999999999999999999999775 999999999754333456899999999999999999999999888
Q ss_pred CeEEEEecCCccEEEEEEccccccccCCCCCCChHhhhcccccCCCCCccCCCCcEEEEEEEeecCeEEEEeecceeccc
Q 013997 89 GKLIVNCTGEGAVFVEAEASFGIEDIGDLTKPDPLILGKLVYEIPGAQHILQIPPLVVQVTKFKCGAFVIGMSMNHCMLD 168 (432)
Q Consensus 89 G~~~i~~~~~gv~f~~a~~~~~~~~l~~~~~p~~~~~~~l~~~~~~~~~~~~~Pl~~vqvt~f~~GG~~l~~~~~H~v~D 168 (432)
|+++|+||++||.|++++++.+++|+.+.. |.. .+++|+|..+...+..+.|++.+|||+|+|||++||+++||.++|
T Consensus 85 g~~~i~c~~~Gv~fv~A~~d~~l~~l~~~~-p~~-~~~~l~p~~~~~~~~~~~pll~vQvT~f~cGG~~lg~~~~H~v~D 162 (439)
T 4g22_A 85 GRIEIECNGEGVLFVEAESDGVVDDFGDFA-PTL-ELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAAD 162 (439)
T ss_dssp SCEEEECCCCCEEEEEEEESSCGGGGTTCC-CCG-GGGGGSCCCCTTSCTTSSCSEEEEEEECTTSCEEEEEEECTTTCC
T ss_pred CCEEEEECCCCCEEEEEEcCCcHHHhcCCC-CCH-HHHhcCCCCCcccccccCceeEEEEEEecCCCEEEEEEeeeccCc
Confidence 999999999999999999999999997643 555 677888866544344678999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCCCCCCccccCCCCCcccCCCCCccccccccCCcc---ccc-cceEEEEEEECHHHHH
Q 013997 169 GLAAMEFMNSWGETARGLPLKVRPVLDRTILKSRDPTKIEFPHPEFDEIEDVSNTNK---LYE-EEMLYRYFCFGPEKLE 244 (432)
Q Consensus 169 g~~~~~fl~~wa~~~rg~~~~~~P~~dr~~l~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~f~~~~~~i~ 244 (432)
|.|+.+|+++||++|||.+....|++||++++.++||....+|.+|.+.++...... ..+ .++..++|+|++++|+
T Consensus 163 g~~~~~Fl~~wa~~~rg~~~~~~P~~dr~~l~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fs~~~i~ 242 (439)
T 4g22_A 163 GFSGLHFINSWSDMARGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQIS 242 (439)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCBCCGGGGCCCSSCCCSSCCGGGSCCC---------------CEEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccccccccCCCCCCCCcCcccccCCCCCcccccccccCCcccceEEEEEECHHHHH
Confidence 999999999999999998766789999999988878776666777765543321110 112 5789999999999999
Q ss_pred HHHHHHhhCCCCCccchHHHHHHHHHHHHHHHcCCCCCCceEEEEEecCCCCCCCCCCCCcccceeeeeeeccccccccc
Q 013997 245 QLKQIAMQDKVLNKCTTFEALSAFVWRARCEALGMQPDQQTKLLFAVDGRSRFEPPLPEGFFGNGIVLTYSLSKAGELLT 324 (432)
Q Consensus 245 ~Lk~~~~~~~~~~~~S~~d~l~A~lW~~i~~ar~~~~~~~~~l~~~vd~R~rl~p~lp~~Y~GN~~~~~~~~~~~~~l~~ 324 (432)
+||+++.++....++|++|+|+|++|+|++|||++++++++.+.++||+|+|++||+|++||||++..+.+.++++||.+
T Consensus 243 ~LK~~a~~~~~~~~~St~dal~A~iWr~~~rAr~~~~~~~~~l~~~vd~R~rl~Pplp~~Y~GN~v~~~~~~~~~~el~~ 322 (439)
T 4g22_A 243 ALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEF 322 (439)
T ss_dssp HHHHGGGGGGCCCCCCHHHHHHHHHHHHHHHHTTCCTTCEEEEEEEEECTTTSSSCCCTTBCSCCEEEECCEEEHHHHHH
T ss_pred HHHHHhhccCCCCCccHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcccCCCCCCCCCCcccceeehhhcceEHHHHhh
Confidence 99999987643468999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcChHHHHHHHHHHHhhcCCC-------CC-CCcEEEeccCCCCCCccccccCccccccccccCC
Q 013997 325 NPLSFTVGLVQNAVSMVTDSYMRSAIDYFEITRARP-------SL-AATMLITTWYRLSFHTIDFGWGEPIFSGPVALPE 396 (432)
Q Consensus 325 ~~l~~~A~~ir~ai~~~~~~~v~~~~~~~~~~~~~~-------~~-~~~~~~tsw~~~~~~~~DFG~G~P~~~~~~~~~~ 396 (432)
.+|+++|..||+++.+++++++++.++|++..++.. .+ ..++++|||.++++|++|||||||+++++...+.
T Consensus 323 ~~L~~~A~~Ir~ai~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vssw~r~~~y~~DFGwGkP~~~~~~~~~~ 402 (439)
T 4g22_A 323 KPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAY 402 (439)
T ss_dssp SCHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCSCSTTCCCCHHHHCTTCEEEEECTTSCTTCCCCSSCCCSEEEESSCCS
T ss_pred CcHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCccchhhcccCCcCcCCcEEEeecCcCCccccccCCCCcceeeccccCC
Confidence 999999999999999999999999999998764321 12 4689999999999999999999999999876667
Q ss_pred CcEEEEeecCCCCCcEEEEEecCHhHHHHHHHhhh
Q 013997 397 KEVILFLSHGTQRKNINVLLGLPASAMKIFEQLME 431 (432)
Q Consensus 397 ~g~~~ilp~~~~~gg~ev~v~l~~~~m~~l~~~~~ 431 (432)
+|.++++|.++++||++|.|+|++++|++|+++|+
T Consensus 403 ~g~~~~~p~~~~~ggi~v~v~L~~~~m~~f~~~~~ 437 (439)
T 4g22_A 403 EGLSFILPSPTNDGSMSVAISLQGEHMKLFQSFLY 437 (439)
T ss_dssp TTEEEEEECTTCSSCEEEEEEEEHHHHHHHHHHHT
T ss_pred CcEEEEeecCCCCCcEEEEEECCHHHHHHHHHHhc
Confidence 89999999877789999999999999999999986
No 2
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum}
Probab=100.00 E-value=9.5e-76 Score=595.82 Aligned_cols=414 Identities=18% Similarity=0.312 Sum_probs=336.7
Q ss_pred eEEEecceEeeCCCC-CCCceeeCCcCccccc-c-ceeEEEEecCCCC-C--ChhHHHHHHHHHHhhhhhcccCCeEEee
Q 013997 12 TVKQGEPTLVLPAEE-TPKGLYFLNNLDQNIA-V-IVRTCYCFKSDSK-G--NEDAAEVVKNALSKLLVQCYPLAGRLTI 85 (432)
Q Consensus 12 ~v~~~~~~~V~P~~~-~~~~~~~Ls~lD~~~~-~-~~~~~~~f~~~~~-~--~~~~~~~L~~sL~~~l~~~p~LaGrl~~ 85 (432)
+|+|.++++|+|+.+ ++.+.++||+||+.+. . |++.++||+.++. + .+..+++||+||+++|++||+|||||+.
T Consensus 1 ~v~v~~~~~V~P~~~~~~~~~~~LS~lD~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~Lk~sLs~~L~~~~plAGRl~~ 80 (453)
T 2xr7_A 1 MASVIEQCQVVPSPGSATELTLPLTYFDHVWLAFHRMRRILFYKLPISRPDFVQTIIPTLKDSLSLTLKYYLPLAGNVAC 80 (453)
T ss_dssp -CEEEEESCCCCCTTCCSEEEEECCHHHHGGGGSCCEEEEEEEECCCCSHHHHHTHHHHHHHHHHHHHTTSGGGGSCCEE
T ss_pred CeEEEEEEEecCCCCCCCCceECCCHHHhhhhhcCCccEEEEEeCCCCCchhHHHHHHHHHHHHHHHhhhccccCeeEEc
Confidence 389999999999987 4568999999999854 5 9999999996532 2 3457899999999999999999999998
Q ss_pred cC--CCeEEEEec-CCccEEEEEEccccccccCCCC-CCChHhhhcccccCCCCCc---cCCCCcEEEEEEEeecCeEEE
Q 013997 86 SS--AGKLIVNCT-GEGAVFVEAEASFGIEDIGDLT-KPDPLILGKLVYEIPGAQH---ILQIPPLVVQVTKFKCGAFVI 158 (432)
Q Consensus 86 ~~--~G~~~i~~~-~~gv~f~~a~~~~~~~~l~~~~-~p~~~~~~~l~~~~~~~~~---~~~~Pl~~vqvt~f~~GG~~l 158 (432)
++ +|+++|+|+ ++||.|++++++.+++++.... .|.. .+.+|+|..+.... ..+.|++.+|||+|.|||++|
T Consensus 81 ~~~~~g~~~i~c~~~~gv~fv~A~~~~~l~~l~~~~~~~~~-~~~~l~p~~~~~~~~~~~~~~pll~vQvT~f~cGG~~l 159 (453)
T 2xr7_A 81 PQDWSGYPELRYVTGNSVSVIFSESDMDFNYLIGYHPRNTK-DFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISI 159 (453)
T ss_dssp ESSTTCCCEEEEETTCCCEEEEEECCSCHHHHTCSSCCCGG-GGGGGSCCCCCCEEETTEEECCCEEEEEEEETTTEEEE
T ss_pred cCCCCCCEEEEecCCCceEEEEEecCCCHHHhhccCCCChh-hhhcCCCCCCCcccccccccCCeEEEEEEEccCCcEEE
Confidence 76 799999998 5999999999999999996432 2333 56678776543211 122899999999999999999
Q ss_pred EeecceeccchhhHHHHHHHHHHHhc-CC-C----CCCCCCCCCccccCCCCCcccCCCCC-ccccccccCC-ccccccc
Q 013997 159 GMSMNHCMLDGLAAMEFMNSWGETAR-GL-P----LKVRPVLDRTILKSRDPTKIEFPHPE-FDEIEDVSNT-NKLYEEE 230 (432)
Q Consensus 159 ~~~~~H~v~Dg~~~~~fl~~wa~~~r-g~-~----~~~~P~~dr~~l~~~~~p~~~~~~~~-~~~~~~~~~~-~~~~~~~ 230 (432)
|+++||.++||.|+.+|+++||++|| |. + +...|++||+.+.. |+.....+.+ +...+..... ....+.+
T Consensus 160 g~~~~H~v~Dg~~~~~Fl~~wa~~~r~G~~~~~~~~~~~P~~dr~~l~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (453)
T 2xr7_A 160 GFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKD--PNGVGMSIWNEMKKYKHMMKMSDVVTPPD 237 (453)
T ss_dssp EEEECTTTCCSHHHHHHHHHHHHHHHTTTCGGGSCGGGSCBCCCSSSCC--SSCHHHHTTTTGGGCTTTSCCSCCCCCCS
T ss_pred EEeeeeeeechhHHHHHHHHHHHHhhcCCCcccCCCCCCCccccccccC--CCCcchHHHHhccccCCccccccccCCCC
Confidence 99999999999999999999999999 86 3 23468999988763 2222111111 1110111000 0012346
Q ss_pred eEEEEEEECHHHHHHHHHHHhhCCCC-CccchHHHHHHHHHHHHHHHcCC-----CCCCceEEEEEecCCCCCCCCCCCC
Q 013997 231 MLYRYFCFGPEKLEQLKQIAMQDKVL-NKCTTFEALSAFVWRARCEALGM-----QPDQQTKLLFAVDGRSRFEPPLPEG 304 (432)
Q Consensus 231 ~~~~~f~~~~~~i~~Lk~~~~~~~~~-~~~S~~d~l~A~lW~~i~~ar~~-----~~~~~~~l~~~vd~R~rl~p~lp~~ 304 (432)
+..++|+|++++|++||+.+.++... .++|+||+|+|++|+|++|||.. ++++++.+.++||+|+|++||+|++
T Consensus 238 ~~~~~f~f~~~~i~~Lk~~a~~~~~~~~~~St~~~l~A~lW~~~~~Ar~~~~~~~~~~~~~~l~~~vd~R~rl~pplP~~ 317 (453)
T 2xr7_A 238 KVRGTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGMEFFGCAADCRAQFNPPLPPS 317 (453)
T ss_dssp CCCEEEEECHHHHHHHHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEECCTTSCSSSCCCTT
T ss_pred ceEEEEEECHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHhccccccCCCCcceEEEEEecccccCCCCCCcc
Confidence 77899999999999999999865422 58999999999999999999965 5778999999999999999999999
Q ss_pred cccceeeeeeeccccccccc-CCHHHHHHHHHHHHhh--cChH-HHHHHHHHHHhhcCCCCCCCcEEEeccCCCCCCccc
Q 013997 305 FFGNGIVLTYSLSKAGELLT-NPLSFTVGLVQNAVSM--VTDS-YMRSAIDYFEITRARPSLAATMLITTWYRLSFHTID 380 (432)
Q Consensus 305 Y~GN~~~~~~~~~~~~~l~~-~~l~~~A~~ir~ai~~--~~~~-~v~~~~~~~~~~~~~~~~~~~~~~tsw~~~~~~~~D 380 (432)
||||++..+.+.+++++|.+ .+|+++|..||+++.+ .+++ ++++ +|++..+... ...++.+|||++|++|++|
T Consensus 318 Y~GN~~~~~~~~~~~~el~~~~~l~~~a~~Ir~ai~~~~~~~e~~~~~--~~~~~~~~~~-~~~~~~vssw~~~~~y~~D 394 (453)
T 2xr7_A 318 YFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRMKDEEWILSG--SWFKEYDKVD-AKRSLSVAGSPKLDLYAAD 394 (453)
T ss_dssp BCSCCCCEEEEEEEHHHHTSSSHHHHHHHHHHHHHTTSSSCHHHHHSS--CTTSCCCCSC-GGGEEEECSCSSCCGGGCC
T ss_pred cccceeeeeeeeeeHHHhcCcchHHHHHHHHHHHHHhhccCCccchhh--HHHHHHHhhc-cCCcEEEeccccCCccccc
Confidence 99999999999999999984 8999999999999999 5788 8888 7877543321 1358999999999999999
Q ss_pred cccCccccccccccCCCc--EEEEeecCCCCCcEEEEEecCHhHHHHHHHhhh
Q 013997 381 FGWGEPIFSGPVALPEKE--VILFLSHGTQRKNINVLLGLPASAMKIFEQLME 431 (432)
Q Consensus 381 FG~G~P~~~~~~~~~~~g--~~~ilp~~~~~gg~ev~v~l~~~~m~~l~~~~~ 431 (432)
||||||.++++...+.+| .++++|.++++||++|.|+|++++|++|+++|+
T Consensus 395 FG~G~P~~v~~~~~~~~g~~~~~l~~~~~~~ggi~v~v~L~~~~m~~f~~~~~ 447 (453)
T 2xr7_A 395 FGWGRPEKLEFVSIDNDDGISMSLSKSKDSDGDLEIGLSLSKTRMNAFAAMFT 447 (453)
T ss_dssp CSSCSCSEEEEGGGSSCSSCEEEEEECSSSTTCEEEEECCCHHHHHHHHHHHH
T ss_pred cCCCcceEEEeeeecCCCceEEEEeecCCCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 999999999987666678 788888777789999999999999999999985
No 3
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A
Probab=100.00 E-value=1.6e-75 Score=594.22 Aligned_cols=416 Identities=20% Similarity=0.315 Sum_probs=329.7
Q ss_pred ccceeeEEEecceEeeCCCC-CCCceeeCCcCccccc-c-ceeEEEEecCCCC-C--ChhHHHHHHHHHHhhhhhcccCC
Q 013997 7 SATELTVKQGEPTLVLPAEE-TPKGLYFLNNLDQNIA-V-IVRTCYCFKSDSK-G--NEDAAEVVKNALSKLLVQCYPLA 80 (432)
Q Consensus 7 ~~~~~~v~~~~~~~V~P~~~-~~~~~~~Ls~lD~~~~-~-~~~~~~~f~~~~~-~--~~~~~~~L~~sL~~~l~~~p~La 80 (432)
|++..+|+|.++++|+|+.+ ++.+.++||+||+.+. . |++.++||+.++. + .+..+++||+||+++|++||+||
T Consensus 1 ~~~~~~v~v~~~~~V~P~~~~~~~~~~~LS~lD~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~Lk~sLs~~L~~~~plA 80 (454)
T 2e1v_A 1 MASLPILTVLEQSQVSPPPDTLGDKSLQLTFFDFFWLRSPPINNLFFYELPITRSQFTETVVPNIKHSLSITLKHFYPFV 80 (454)
T ss_dssp -----CEEEEEEEEECCCTTSCCCEEEECCHHHHTTTTCCCEEEEEEEECCCCHHHHHHTHHHHHHHHHHHHHTTCGGGG
T ss_pred CCCCceEEEEEEEEEeCCCCCCCCceecCchHHhhhhccCCccEEEEEeCCCCcchhhHHHHHHHHHHHHHHhhhccccc
Confidence 45567899999999999987 5678999999999854 5 9999999996532 2 33578999999999999999999
Q ss_pred eEEe-ec-CCCeEEEEec-CCccEEEEEEccccccccCCCCC-CChHhhhcccccCCCCC---ccCCCCcEEEEEEEeec
Q 013997 81 GRLT-IS-SAGKLIVNCT-GEGAVFVEAEASFGIEDIGDLTK-PDPLILGKLVYEIPGAQ---HILQIPPLVVQVTKFKC 153 (432)
Q Consensus 81 Grl~-~~-~~G~~~i~~~-~~gv~f~~a~~~~~~~~l~~~~~-p~~~~~~~l~~~~~~~~---~~~~~Pl~~vqvt~f~~ 153 (432)
|||+ .+ ++|+++|+|+ ++||.|++++++.+++++..... +.. .+.+|+|..+... +..+.|++.+|||+|.|
T Consensus 81 GRl~~~~~~~g~~~i~c~~~~gv~fv~A~~~~~l~~l~~~~~~~~~-~~~~l~p~~~~~~~~~~~~~~pll~vQvT~f~c 159 (454)
T 2e1v_A 81 GKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRNCD-KFYDLVPILGESTRLSDCIKIPLFSVQVTLFPN 159 (454)
T ss_dssp SEEEECSSSSSCCEEEECTTCCEEEEEEEECSCGGGTSSSSCEEGG-GGGGGSCCCCCCEECSSCEEEECEEEEEEEETT
T ss_pred eeeeeccCCCCCEEEEECCCCcEEEEEEEeCCCHHHhcCCCCCcch-hhhcCCCCCCCcccccccccCceEEEEEEEecC
Confidence 9998 65 5799999998 59999999999999999864322 222 5667887654321 11345999999999999
Q ss_pred CeEEEEeecceeccchhhHHHHHHHHHHHhc-CCC------CCCCCCCCCccccCCCCCcccCCCC-Ccccccc---ccC
Q 013997 154 GAFVIGMSMNHCMLDGLAAMEFMNSWGETAR-GLP------LKVRPVLDRTILKSRDPTKIEFPHP-EFDEIED---VSN 222 (432)
Q Consensus 154 GG~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r-g~~------~~~~P~~dr~~l~~~~~p~~~~~~~-~~~~~~~---~~~ 222 (432)
||++||+++||.++||.|+.+|+++||++|| |.. +...|++|| +++. |+ ....+. .+..... ..+
T Consensus 160 gG~~lg~~~~H~v~Dg~~~~~Fl~awa~~~r~g~~~~~~~~~~~~P~~dr-~l~~--p~-~~~~~~~~~~~~~~~~~~~~ 235 (454)
T 2e1v_A 160 QGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDR-IIKY--PM-LDEAYLKRAKVESFNEDYVT 235 (454)
T ss_dssp TEEEEEEEECGGGCCHHHHHHHHHHHHHHHHTTSCCHHHHHHSCCCBCCC-CCCC--HH-HHHHHHHHTTCTTHHHHCCC
T ss_pred CcEEEEEEeeeeecchhHHHHHHHHHHHHhccCCCccccCCCCCCCcccc-cCCC--CC-cchHHHHhhhccccccccCc
Confidence 9999999999999999999999999999999 863 145789999 7652 22 110000 0100000 000
Q ss_pred CccccccceEEEEEEECHHHHHHHHHHHhhCCCC-CccchHHHHHHHHHHHHHHHcCCCCCCceEEEEEecCCCCCCCCC
Q 013997 223 TNKLYEEEMLYRYFCFGPEKLEQLKQIAMQDKVL-NKCTTFEALSAFVWRARCEALGMQPDQQTKLLFAVDGRSRFEPPL 301 (432)
Q Consensus 223 ~~~~~~~~~~~~~f~~~~~~i~~Lk~~~~~~~~~-~~~S~~d~l~A~lW~~i~~ar~~~~~~~~~l~~~vd~R~rl~p~l 301 (432)
.....+.+...++|+|++++|++||+++.++... .++|++|+|+|++|+|++||| +++++.+.++||+|+|++||+
T Consensus 236 ~~~~~~~~~~~~~f~f~~~~i~~LK~~a~~~~~~~~~~St~d~l~A~lWr~~~~Ar---~~~~~~l~~~vd~R~rl~ppl 312 (454)
T 2e1v_A 236 QSLAGPSDKLRATFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSR---NDKLQLFGFPIDRRARMKPPI 312 (454)
T ss_dssp CCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCTTCSCCCHHHHHHHHHHHHHHHHH---CCSEEEEEEEEECGGGSSSCC
T ss_pred ccCCCCCCceEEEEEECHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhc---CCCceEEEEEecchhccCCCC
Confidence 0000235678999999999999999999865432 589999999999999999999 678999999999999999999
Q ss_pred CCCcccceeeeeeeccccccccc-CCHHHHHHHHHHHHhhcC----hHHHHH-HHHHHHhhcCCCCCCCcEEEeccCCCC
Q 013997 302 PEGFFGNGIVLTYSLSKAGELLT-NPLSFTVGLVQNAVSMVT----DSYMRS-AIDYFEITRARPSLAATMLITTWYRLS 375 (432)
Q Consensus 302 p~~Y~GN~~~~~~~~~~~~~l~~-~~l~~~A~~ir~ai~~~~----~~~v~~-~~~~~~~~~~~~~~~~~~~~tsw~~~~ 375 (432)
|++||||++..+.+.+++++|.+ .+|+++|..||+++.+++ ++++++ ..+|++..+... ...++.+|||.+++
T Consensus 313 P~~Y~GN~~~~~~~~~~~~el~~~~~l~~~a~~Ir~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vssw~~~~ 391 (454)
T 2e1v_A 313 PTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGVLKDDMESFNDLVSEGM-PTTMTWVSGTPKLR 391 (454)
T ss_dssp CTTBCSCCEEEEEEEEEGGGTSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CHHHHHCC-CSEEEEEECCTTSC
T ss_pred CcccccceeeeEEeecchhhccccccHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhc-CCceEEEecCCCCC
Confidence 99999999999999999999994 899999999999999986 445555 666766432211 13489999999999
Q ss_pred CCccccccCccccccccccCCCcEEEEeecCCCCCcEEEEEecCHhHHHHHHHhhh
Q 013997 376 FHTIDFGWGEPIFSGPVALPEKEVILFLSHGTQRKNINVLLGLPASAMKIFEQLME 431 (432)
Q Consensus 376 ~~~~DFG~G~P~~~~~~~~~~~g~~~ilp~~~~~gg~ev~v~l~~~~m~~l~~~~~ 431 (432)
+|++|||||||.++++...+.+|.++++|.++++||++|.|+|++++|++|+++|+
T Consensus 392 ~y~~DFG~G~P~~v~~~~~~~~g~~~l~p~~~~~ggi~v~v~L~~~~m~~f~~~~~ 447 (454)
T 2e1v_A 392 FYDMDFGWGKPKKLETVSIDHNGAISINSCKESNEDLEIGVCISATQMEDFVHIFD 447 (454)
T ss_dssp GGGCCSSSCSCSEEEEGGGGGSSEEEEEECSSCTTSEEEEEEEEHHHHHHHHHHHH
T ss_pred cccccccCccceEEEeeeeCCCCeEEEEecCCCCCCEEEEEEECHHHHHHHHHHHH
Confidence 99999999999999987655678889999877789999999999999999999985
No 4
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina}
Probab=100.00 E-value=1.9e-74 Score=580.44 Aligned_cols=395 Identities=23% Similarity=0.406 Sum_probs=327.7
Q ss_pred eeEEEecceEeeCCCCCCCc--eeeCCcCcccccc-ceeEEEEecCCCC---CChhHHHHHHHHHHhhhhhcccCCeEEe
Q 013997 11 LTVKQGEPTLVLPAEETPKG--LYFLNNLDQNIAV-IVRTCYCFKSDSK---GNEDAAEVVKNALSKLLVQCYPLAGRLT 84 (432)
Q Consensus 11 ~~v~~~~~~~V~P~~~~~~~--~~~Ls~lD~~~~~-~~~~~~~f~~~~~---~~~~~~~~L~~sL~~~l~~~p~LaGrl~ 84 (432)
|+|++.++++|+|+.|||.+ .++||+||+..+. |++.++||+.++. +....+++||+||+++|.+||+|||||+
T Consensus 3 m~v~v~~~~~V~P~~ptp~~~~~~~LS~lD~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~Lk~sLs~~L~~~~plAGRl~ 82 (421)
T 2bgh_A 3 PQMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHLKQSLSKVLTHFYPLAGRIN 82 (421)
T ss_dssp -CEEEEEEEEEECSSCCCTTSCCCBCCHHHHTSCSSEEEEEEEECCCSSCCCCHHHHHHHHHHHHHHHTTTSGGGGSEEE
T ss_pred ceEEEeeeEEEeCCCCCCCCCcccCCChHHhcccccccceEEEEeCCCccccchhhHHHHHHHHHHHHhhhcchhccccC
Confidence 67999999999999998854 8999999998765 9999999996542 2456899999999999999999999996
Q ss_pred ecCCCeEEEEecCCccEEEEEEccccccccCCCCCCChHhhhcccccCCCCCc----cCCCCcEEEEEEEeecCeEEEEe
Q 013997 85 ISSAGKLIVNCTGEGAVFVEAEASFGIEDIGDLTKPDPLILGKLVYEIPGAQH----ILQIPPLVVQVTKFKCGAFVIGM 160 (432)
Q Consensus 85 ~~~~G~~~i~~~~~gv~f~~a~~~~~~~~l~~~~~p~~~~~~~l~~~~~~~~~----~~~~Pl~~vqvt~f~~GG~~l~~ 160 (432)
. +++|+|+++||.|++++++.+++|+.+.. |....+++|+|..+ ..+ ..+.|++.+|||+|.|||++||+
T Consensus 83 ~----~~~i~c~~~Gv~fv~A~~d~~l~~~~~~~-p~~~~~~~l~p~~~-~~~~~~~~~~~pll~vQvt~f~cgG~~lg~ 156 (421)
T 2bgh_A 83 V----NSSVDCNDSGVPFVEARVQAQLSQAIQNV-VELEKLDQYLPSAA-YPGGKIEVNEDVPLAVKISFFECGGTAIGV 156 (421)
T ss_dssp T----TTEEECCCCCEEEEEEEESSCHHHHHSCC-SSGGGGGGGSSSCS-SSSSSSCCCTTCSEEEEEEECTTSCEEEEE
T ss_pred C----CcEEEEcCCceEEEEEEEcCCHHHHhccC-CChHHHHhcCCCCC-CccccccccCCceEEEEEEEEcCCCEEEEE
Confidence 2 58999999999999999999999985421 44335667777442 211 35689999999999999999999
Q ss_pred ecceeccchhhHHHHHHHHHHHhcCCCCCCCCCCCC-ccccCC--CCCcccCCCCCccccccccCCccccccceEEEEEE
Q 013997 161 SMNHCMLDGLAAMEFMNSWGETARGLPLKVRPVLDR-TILKSR--DPTKIEFPHPEFDEIEDVSNTNKLYEEEMLYRYFC 237 (432)
Q Consensus 161 ~~~H~v~Dg~~~~~fl~~wa~~~rg~~~~~~P~~dr-~~l~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 237 (432)
++||.++||.|+.+|+++||++|||.+....|.+|| +.+.+. ++|. +. + ..+.++..++|+
T Consensus 157 ~~~H~v~Dg~~~~~fl~~wa~~~rg~~~~~~P~~dr~~~l~p~~~~~~~-----~~-------~----~~~~~~~~~~f~ 220 (421)
T 2bgh_A 157 NLSHKIADVLSLATFLNAWTATCRGETEIVLPNFDLAARHFPPVDNTPS-----PE-------L----VPDENVVMKRFV 220 (421)
T ss_dssp EEETTTCCHHHHHHHHHHHHHHHTTCSCCCCCBCSHHHHHSCCCTTCCC-----CC-------C----CCCSSEEEEEEE
T ss_pred EeeEEechHHHHHHHHHHHHHHhcCCCCCCCCccccccccCCCcccCCC-----Cc-------c----CCccceEEEEEE
Confidence 999999999999999999999999976446788998 655321 1111 10 0 113568899999
Q ss_pred ECHHHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHcCC--CCCCceEEEEEecCCCCCCCCCCCCcccceeeeeee
Q 013997 238 FGPEKLEQLKQIAMQDKVLNKCTTFEALSAFVWRARCEALGM--QPDQQTKLLFAVDGRSRFEPPLPEGFFGNGIVLTYS 315 (432)
Q Consensus 238 ~~~~~i~~Lk~~~~~~~~~~~~S~~d~l~A~lW~~i~~ar~~--~~~~~~~l~~~vd~R~rl~p~lp~~Y~GN~~~~~~~ 315 (432)
|++++|++||+.+.++....++|++|+|+|++|+|+++||.. .+++++.+.++||+|+|++||+|++||||++..+.+
T Consensus 221 f~~~~i~~LK~~a~~~~~~~~~St~d~l~A~iW~~~~~Ar~~~~~~~~~~~l~~~vd~R~rl~pplP~~y~GN~~~~~~~ 300 (421)
T 2bgh_A 221 FDKEKIGALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGNIATLLFA 300 (421)
T ss_dssp ECHHHHHHHHHHTC-----CCCCHHHHHHHHHHHHHHHHHHHHSCCCSCEEEEEEEESGGGSSSCCCTTBCSCCEEEEEE
T ss_pred ECHHHHHHHHHHhhccCCCCCCchhHhHHHHHHHHHHHHhcccCCCCCceEEEEEecCccccCCCCCCCccceEEEEEEE
Confidence 999999999999976543358999999999999999999864 256789999999999999999999999999999988
Q ss_pred cccccccccCCHHHHHHHHHHHHhhcChHHHHHHHHHHHhhcCCCCCCCcEEEeccCCCCCCccccccCccccccccccC
Q 013997 316 LSKAGELLTNPLSFTVGLVQNAVSMVTDSYMRSAIDYFEITRARPSLAATMLITTWYRLSFHTIDFGWGEPIFSGPVALP 395 (432)
Q Consensus 316 ~~~~~~l~~~~l~~~A~~ir~ai~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~tsw~~~~~~~~DFG~G~P~~~~~~~~~ 395 (432)
..++++ +.+|+++|..||+++.++++++++...++.+.....+. ...+.+|||.++++|++|||||||.++++...+
T Consensus 301 ~~~~~~--~~~l~~~a~~ir~ai~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vssw~~~~~y~~DFGwGkP~~v~~~~~~ 377 (421)
T 2bgh_A 301 AVDAEW--DKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCLYELEP-QELLSFTSWCRLGFYDLDFGWGKPLSACTTTFP 377 (421)
T ss_dssp EECTTC--CCCGGGGHHHHHHHTCCCSSCHHHHHHHHHHHHHTSCG-GGEEEEEEETTSCGGGCCSSSCCCSEEECCCCC
T ss_pred Eecccc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCeEEEeccccCCCcccccCCCccCeecccccC
Confidence 888775 78999999999999999999999988887654322111 246999999999999999999999999987666
Q ss_pred CCcEEEEeecCCCCCcEEEEEecCHhHHHHHHHhhh
Q 013997 396 EKEVILFLSHGTQRKNINVLLGLPASAMKIFEQLME 431 (432)
Q Consensus 396 ~~g~~~ilp~~~~~gg~ev~v~l~~~~m~~l~~~~~ 431 (432)
.+|+++++|.+. ++|++|.|+|++++|++|+++|.
T Consensus 378 ~~g~~~~~p~~~-~~gi~v~v~L~~~~m~~f~~e~~ 412 (421)
T 2bgh_A 378 KRNAALLMDTRS-GDGVEAWLPMAEDEMAMLPVELL 412 (421)
T ss_dssp STTEEEEEECTT-SSSEEEEEEEEHHHHHHSCHHHH
T ss_pred cCCEEEEEecCC-CCeEEEEEEcCHHHHHHHHHHHH
Confidence 689999999875 45899999999999999998875
No 5
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Probab=100.00 E-value=7.3e-66 Score=523.12 Aligned_cols=393 Identities=17% Similarity=0.242 Sum_probs=310.9
Q ss_pred eeeCCcCcccc--cc-ceeEEEEecCCCC-CChhHHHHHHHHHHhhhhhcccCCeEEeecC-----CCeEEEEecCCccE
Q 013997 31 LYFLNNLDQNI--AV-IVRTCYCFKSDSK-GNEDAAEVVKNALSKLLVQCYPLAGRLTISS-----AGKLIVNCTGEGAV 101 (432)
Q Consensus 31 ~~~Ls~lD~~~--~~-~~~~~~~f~~~~~-~~~~~~~~L~~sL~~~l~~~p~LaGrl~~~~-----~G~~~i~~~~~gv~ 101 (432)
.++||.+||+. +. |++.++||+.++. +.+..+++||+||+++|.+||+|||||+.++ +|+++|.|++.++.
T Consensus 4 ~~~Ls~lD~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~Lk~sLs~~L~~~~plAGRl~~~~~~~~~~g~~~i~~~~~~~~ 83 (451)
T 2rkv_A 4 KIQLDTLGQLPGLLSIYTQISLLYPVSDSSQYPTIVSTFEQGLKRFSEAVPWVAGQVKAEGISEGNTGTSFIVPFEDVPR 83 (451)
T ss_dssp CEECCGGGGCTTGGGCEEEEEEEEECSCGGGHHHHHHHHHHHHHHHHHHSGGGGCEEEEESCBTTBCCEEEEECCCSSCE
T ss_pred cccCChhhcCccccccceeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCceeEEEEECCCCCCCCCcEEEeecCCCCe
Confidence 46999999997 44 9999999995432 3456799999999999999999999998864 58999998777777
Q ss_pred EEEEEccc-----cccccCCCCCCChHhhhc--cccc--CCCCC---ccCCCCcEEEEEEEeecCeEEEEeecceeccch
Q 013997 102 FVEAEASF-----GIEDIGDLTKPDPLILGK--LVYE--IPGAQ---HILQIPPLVVQVTKFKCGAFVIGMSMNHCMLDG 169 (432)
Q Consensus 102 f~~a~~~~-----~~~~l~~~~~p~~~~~~~--l~~~--~~~~~---~~~~~Pl~~vqvt~f~~GG~~l~~~~~H~v~Dg 169 (432)
|++++++. ++++|++...|.. .++. +.|. .|... ...+.|++.+||| |.|||++||+++||.++||
T Consensus 84 ~~va~~~~d~~~p~~~~l~~~~~p~~-~~~~~~~~p~~~~p~~~~~~~~~~~pll~vQvT-~~~GG~~lg~~~~H~v~Dg 161 (451)
T 2rkv_A 84 VVVKDLRDDPSAPTIEGMRKAGYPMA-MFDENIIAPRKTLPIGPGTGPDDPKPVILLQLN-FIKGGLILTVNGQHGAMDM 161 (451)
T ss_dssp EEEEECTTCTTSCBHHHHHHHTSCGG-GSBHHHHCSSCSSSCSTTCSTTSCCBSEEEEEE-EEBTEEEEEEEEETTTCCH
T ss_pred EEEEeCCCCCCCCCHHHHHHcCCChh-hcCHhhcCCcccCCCCcccCCCCCCceEEEEEE-EecCceeeeeeehhccccH
Confidence 99988764 5777754334543 2221 3232 22111 2345899999999 7799999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCC----CCCCCCCccccC---CCCCcccCCCCCccccccccCCccccccceEEEEEEECHHH
Q 013997 170 LAAMEFMNSWGETARGLPLK----VRPVLDRTILKS---RDPTKIEFPHPEFDEIEDVSNTNKLYEEEMLYRYFCFGPEK 242 (432)
Q Consensus 170 ~~~~~fl~~wa~~~rg~~~~----~~P~~dr~~l~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 242 (432)
.|+.+|+++||++|||.+.. ..|++||+.+.+ +.+|....++.+|...+..... .....++..++|+|++++
T Consensus 162 ~g~~~Fl~awa~~~rg~~~~~~~~~~p~~dr~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~f~~~~ 240 (451)
T 2rkv_A 162 VGQDAVIRLLSKACRNDPFTEEEMTAMNLDRKTIVPYLENYTIGPEVDHQIVKADVAGGDA-VLTPVSASWAFFTFSPKA 240 (451)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHTTCCSTTSSCCCTTCCCCGGGTTCBCCTTSCC--------CCEEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCccccccccCchhhccccccccCCCccccccccCCCCCCCCC-CCCCCCceEEEEEECHHH
Confidence 99999999999999997633 257899875433 2334333344444332211000 012356889999999999
Q ss_pred HHHHHHHHhhCCC--CCccchHHHHHHHHHHHHHHHc-C-CCCCCceEEEEEecCCCCCCCCCCCCcccceeeeeeeccc
Q 013997 243 LEQLKQIAMQDKV--LNKCTTFEALSAFVWRARCEAL-G-MQPDQQTKLLFAVDGRSRFEPPLPEGFFGNGIVLTYSLSK 318 (432)
Q Consensus 243 i~~Lk~~~~~~~~--~~~~S~~d~l~A~lW~~i~~ar-~-~~~~~~~~l~~~vd~R~rl~p~lp~~Y~GN~~~~~~~~~~ 318 (432)
|++||+++.++.. ..++|++|+|+|++|+|++||| . .++++++.+.++||+|+|++ +|.+||||++..+.+..+
T Consensus 241 i~~LK~~a~~~~~~~~~~~St~d~l~A~~Wr~~~~Ar~~~~~~~~~~~l~~~vd~R~rl~--lP~~y~GN~~~~~~~~~~ 318 (451)
T 2rkv_A 241 MSELKDAATKTLDASTKFVSTDDALSAFIWKSASRVRLERIDGSAPTEFCRAVDARPAMG--VSNNYPGLLQNMTYHNST 318 (451)
T ss_dssp HHHHHHHHHTTCCTTCSCCCHHHHHHHHHHHHHHHHHTTTSCTTSEEEEEEEEECHHHHT--CCTTCCSCCEEEEEEEEE
T ss_pred HHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHhccCCCCCceEEEEEecccccCC--CCCCCcccceeeecccCc
Confidence 9999999987642 3689999999999999999998 3 56788999999999999998 899999999999999889
Q ss_pred ccccccCCHHHHHHHHHHHHhhcChHH-HHHHHHHHHhhcCCC--------CCCCcEEEeccCCCCCCccccc--cCccc
Q 013997 319 AGELLTNPLSFTVGLVQNAVSMVTDSY-MRSAIDYFEITRARP--------SLAATMLITTWYRLSFHTIDFG--WGEPI 387 (432)
Q Consensus 319 ~~~l~~~~l~~~A~~ir~ai~~~~~~~-v~~~~~~~~~~~~~~--------~~~~~~~~tsw~~~~~~~~DFG--~G~P~ 387 (432)
+++|.+.+|+++|..||+++.+++.++ +++.++|++..++.. ..+.++++|||+++++|++||| ||||.
T Consensus 319 ~~el~~~~L~~~a~~ir~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ssw~~~~~y~~DFG~gwG~P~ 398 (451)
T 2rkv_A 319 IGEIANESLGATASRLRSELDPASMRQRTRGLATYLHNNPDKSNVSLTADADPSTSVMLSSWAKVGLWDYDFGLGLGKPE 398 (451)
T ss_dssp HHHHHHSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCCTTBCTTTTCCTTTCEEEEECTTCCGGGCCTTCSSCSCS
T ss_pred HHHhccchHHHHHHHHHHHhcccCchhHHHHHHHHHhcCCCccccccccccCCCCCEEEeccccCCccccccCCCCCCce
Confidence 999999999999999999999998888 999999998854432 1145799999999999999998 89999
Q ss_pred cccccc-cCCCcEEEEeecCCCCCcEEEEEecCHhHHHHHHHh
Q 013997 388 FSGPVA-LPEKEVILFLSHGTQRKNINVLLGLPASAMKIFEQL 429 (432)
Q Consensus 388 ~~~~~~-~~~~g~~~ilp~~~~~gg~ev~v~l~~~~m~~l~~~ 429 (432)
+++.+. .+.+|.++++|.. ++||++|.|+|++++|++|+++
T Consensus 399 ~v~~~~~~~~~g~~~~~p~~-~~ggi~v~v~L~~~~m~~f~~d 440 (451)
T 2rkv_A 399 TVRRPIFEPVESLMYFMPKK-PDGEFCAALSLRDEDMDRLKAD 440 (451)
T ss_dssp EEECCBCSCCTTEEEECCCC-TTSCEEEEEEEEHHHHHHHHHC
T ss_pred EEEcCCccCCCCEEEEecCC-CCCCEEEEEEeCHHHHHHHhcC
Confidence 997544 3457899999854 5789999999999999999874
No 6
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=99.21 E-value=5.8e-09 Score=103.53 Aligned_cols=285 Identities=14% Similarity=0.119 Sum_probs=166.6
Q ss_pred CceeeCCcCccccc-c--ceeEEEEecCCCCCChhHHHHHHHHHHhhhhhcccCCeEEeecCCCeEEEEecCCccE-EEE
Q 013997 29 KGLYFLNNLDQNIA-V--IVRTCYCFKSDSKGNEDAAEVVKNALSKLLVQCYPLAGRLTISSAGKLIVNCTGEGAV-FVE 104 (432)
Q Consensus 29 ~~~~~Ls~lD~~~~-~--~~~~~~~f~~~~~~~~~~~~~L~~sL~~~l~~~p~LaGrl~~~~~G~~~i~~~~~gv~-f~~ 104 (432)
...+|||++.+.+- . ++..++-++.+ .+.++|++++.+++..+|.|-.++...++|.+++........ +.+
T Consensus 5 ~~~~pls~~Q~~~~~~~y~~~~~~~l~g~-----ld~~~l~~A~~~lv~rh~~LRt~f~~~~~~~~q~v~~~~~~~~~~~ 79 (422)
T 1q9j_A 5 SVIRKLSHSEEVFAQYEVFTSMTIQLRGV-----IDVDALSDAFDALLETHPVLASHLEQSSDGGWNLVADDLLHSGICV 79 (422)
T ss_dssp SEEEECCHHHHHHHHTTCEEEEEEEEESC-----CCHHHHHHHHHHHHHHCGGGSEEEEECTTSSEEEEECCSSSCCCEE
T ss_pred ceeecCCHHHHHHHhcCceEEEEEEEecC-----CCHHHHHHHHHHHHHhCccceEEEEecCCcceeeeccCCCCCceEE
Confidence 35789999888654 2 33444445533 688999999999999999999999876555454444332222 211
Q ss_pred EEccccccccCCCCCCChHhhhcccccCCCCCccCCCCcEEEEEEEeecCeEEEEeecceeccchhhHHHHHHHHHHHhc
Q 013997 105 AEASFGIEDIGDLTKPDPLILGKLVYEIPGAQHILQIPPLVVQVTKFKCGAFVIGMSMNHCMLDGLAAMEFMNSWGETAR 184 (432)
Q Consensus 105 a~~~~~~~~l~~~~~p~~~~~~~l~~~~~~~~~~~~~Pl~~vqvt~f~~GG~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r 184 (432)
. |+....... .+.+. ..+ -+ ...|++.+.+.. .+++..|.+.+||.++||.|+..|++.|.+.++
T Consensus 80 ~-------d~~~~~~~~--~~~~~--~~~--~d-~~~pl~r~~l~~-~~~~~~l~l~~hH~i~Dg~S~~~l~~~l~~~Y~ 144 (422)
T 1q9j_A 80 I-------DGTAATNGS--PSGNA--ELR--LD-QSVSLLHLQLIL-REGGAELTLYLHHCMADGHHGAVLVDELFSRYT 144 (422)
T ss_dssp E-------C--------------C--CCC--CC-TTTCSEEEEEEC-CSSSCEEEEEEEGGGCCHHHHHHHHHHHHHHHH
T ss_pred E-------ECCCCCcch--hhhcc--cCc--cC-CCCCcEEEEEEe-cCCCeEEEEEeceEEEchhhHHHHHHHHHHHHH
Confidence 1 111100000 11110 011 12 467999998876 677899999999999999999999999999987
Q ss_pred -----CCCCCCCC--CCCC--ccccCCC-----CCcccCCCCCccc--cc---cccCC-ccccccceEEEEEEECHHHHH
Q 013997 185 -----GLPLKVRP--VLDR--TILKSRD-----PTKIEFPHPEFDE--IE---DVSNT-NKLYEEEMLYRYFCFGPEKLE 244 (432)
Q Consensus 185 -----g~~~~~~P--~~dr--~~l~~~~-----~p~~~~~~~~~~~--~~---~~~~~-~~~~~~~~~~~~f~~~~~~i~ 244 (432)
|.+...+| ..+- .....+. .+........|.. .+ .++.. ............+.++++..+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~ 224 (422)
T 1q9j_A 145 DAVTTGDPGPITPQPTPLSMEAVLAQRGIRKQGLSGAERFMSVMYAYEIPATETPAVLAHPGLPQAVPVTRLWLSKQQTS 224 (422)
T ss_dssp HHHHSSSCCCCCCCCCCBCHHHHHHHSSCCC-----CTTSSTTTTCC-------------CCSBCCCCEEEECCCHHHHH
T ss_pred HhhccCCCCCCCCCCCCCCHHHHHHhcCCcccccchhhhhhhhhhcccCCCcccCCCCCCCCCCCCccceEEEeCHHHHH
Confidence 33322222 1111 0000110 0000000112211 01 11100 001112345688899999999
Q ss_pred HHHHHHhhCCCCCccchHHHHHHHHHHHHHHHcCCCCCCceEEEEEecCCCCCCCCCCCCcccceeeeeeeccccccccc
Q 013997 245 QLKQIAMQDKVLNKCTTFEALSAFVWRARCEALGMQPDQQTKLLFAVDGRSRFEPPLPEGFFGNGIVLTYSLSKAGELLT 324 (432)
Q Consensus 245 ~Lk~~~~~~~~~~~~S~~d~l~A~lW~~i~~ar~~~~~~~~~l~~~vd~R~rl~p~lp~~Y~GN~~~~~~~~~~~~~l~~ 324 (432)
+|++.|++.+ +|.++++.|.+-..+.|-+. .......+..+++.|....|+++..=+.|.+++....+++. .+
T Consensus 225 ~l~~~a~~~~----~t~~~~l~aa~~~~l~r~~~-~~~~~v~~g~~~~~R~~~~~~~~~~~~~~~vG~f~n~lp~~--~~ 297 (422)
T 1q9j_A 225 DLMAFGREHR----LSLNAVVAAAILLTEWQLRN-TPHVPIPYVYPVDLRFVLAPPVAPTEATNLLGAASYLAEIG--PN 297 (422)
T ss_dssp HHHHHHTTTT----CCHHHHHHHHHHHHHHHHHT-CSSCCEEEEEEEETTTTSSSCCCTTTBSCCEEEEEEEECCC--SS
T ss_pred HHHHHHHHhC----CCHHHHHHHHHHHHHHhccc-CCCceEEEeeeeecccccCCCCChhhhhhhheeeeeeeecc--CC
Confidence 9999998764 89999999987666665422 24567889999999998765443112233333333333322 14
Q ss_pred CCHHHHHHHHHHHHhh
Q 013997 325 NPLSFTVGLVQNAVSM 340 (432)
Q Consensus 325 ~~l~~~A~~ir~ai~~ 340 (432)
.++.++++.+++.+.+
T Consensus 298 ~~~~~~l~~v~~~~~~ 313 (422)
T 1q9j_A 298 TDIVDLASDIVATLRA 313 (422)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5788888888887765
No 7
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.87 E-value=8.7e-07 Score=90.50 Aligned_cols=280 Identities=14% Similarity=0.113 Sum_probs=165.5
Q ss_pred CceeeCCcCcccc-------c---cc-eeEEEEecCCCCCChhHHHHHHHHHHhhhhhcccCCeEEeecCCCeE-EEEec
Q 013997 29 KGLYFLNNLDQNI-------A---VI-VRTCYCFKSDSKGNEDAAEVVKNALSKLLVQCYPLAGRLTISSAGKL-IVNCT 96 (432)
Q Consensus 29 ~~~~~Ls~lD~~~-------~---~~-~~~~~~f~~~~~~~~~~~~~L~~sL~~~l~~~p~LaGrl~~~~~G~~-~i~~~ 96 (432)
...+|||+.-+.+ + .| +...+-++. ..+.++|++++.+++.++|.|--++...+ |.+ ++...
T Consensus 94 ~~~~pls~~Q~~~~~~~~~~~~~~~y~~~~~~~l~g-----~ld~~~l~~A~~~lv~rh~~LRt~f~~~~-~~~~q~v~~ 167 (520)
T 2jgp_A 94 QAYYPVSSAQKRMYILDQFEGVGISYNMPSTMLIEG-----KLERTRVEAAFQRLIARHESLRTSFAVVN-GEPVQNIHE 167 (520)
T ss_dssp CSSEECCHHHHHHHHHHHHTCCTTTTBCCEEEEEEE-----CCCHHHHHHHHHHHHHHCGGGGEEEEEET-TEEEEEECS
T ss_pred CCCCCCCHHHHHHHHHHhcCCCCCcccceEEEEECC-----CCCHHHHHHHHHHHHHHhHhheeEEEeeC-CEEEEEECC
Confidence 4578999765522 1 13 344444543 36899999999999999999999998754 443 33333
Q ss_pred CCccEEEEEEccccccccCCCCCCChHhhhcccccCCCCCccCCCCcEEEEEEEeecCeEEEEeecceeccchhhHHHHH
Q 013997 97 GEGAVFVEAEASFGIEDIGDLTKPDPLILGKLVYEIPGAQHILQIPPLVVQVTKFKCGAFVIGMSMNHCMLDGLAAMEFM 176 (432)
Q Consensus 97 ~~gv~f~~a~~~~~~~~l~~~~~p~~~~~~~l~~~~~~~~~~~~~Pl~~vqvt~f~~GG~~l~~~~~H~v~Dg~~~~~fl 176 (432)
+....+.+.+ +.+ . ...++.-.....-+....|++.+.+....++...|.+.+||.++||.|+..|+
T Consensus 168 ~~~~~~~~~~-------~~~-----~-~~~~~~~~~~~~fdl~~~pl~r~~l~~~~~~~~~l~~~~HH~i~Dg~S~~~l~ 234 (520)
T 2jgp_A 168 DVPFALAYSE-------VTE-----E-EARELVSSLVQPFDLEVAPLIRVSLLKIGEDRYVLFTDMHHSISDGVSSGILL 234 (520)
T ss_dssp CCCCCCEEEE-------CCH-----H-HHHHHHHHTCCCCCTTSSCCEEEEEEEEETTEEEEEEEEBGGGCCHHHHHHHH
T ss_pred CCCCceEEEe-------CCH-----H-HHHHHHHHhcCCCCCCCCcceeEEEEEEcCCcEEEEEEccceeecHhHHHHHH
Confidence 2222222211 110 0 11111000000112345689988887666777999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCC-CC-C-----CccccCCC-CCccc-----C-CCCCcccccc-ccCCccccccceEEEEEEECHH
Q 013997 177 NSWGETARGLPLKVRP-VL-D-----RTILKSRD-PTKIE-----F-PHPEFDEIED-VSNTNKLYEEEMLYRYFCFGPE 241 (432)
Q Consensus 177 ~~wa~~~rg~~~~~~P-~~-d-----r~~l~~~~-~p~~~-----~-~~~~~~~~~~-~~~~~~~~~~~~~~~~f~~~~~ 241 (432)
+.+.+.+++.+....| .+ | +....... ..... + ..+.....|. .+.+. ..........+.++.+
T Consensus 235 ~el~~~Y~~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~yW~~~l~~~~~~~~lp~~~~~~~-~~~~~~~~~~~~l~~~ 313 (520)
T 2jgp_A 235 AEWVQLYQGDVLPELRIQYKDFAVWQQEFSQSAAFHKQEAYWLQTFADDIPVLNLPTDFTRPS-TQSFAGDQCTIGAGKA 313 (520)
T ss_dssp HHHHHHHTTCCCCCCSCCHHHHHHHHHHHTTSHHHHHHHHHHHHHTSSCCCCCCCCCSSCCCS-SCCCBEEEEEEECCHH
T ss_pred HHHHHHHccCCCCCCCCCHHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCCcCCCCCCCCCCC-CCCCCccEEEEeCCHH
Confidence 9999999986422112 11 1 00000000 00000 0 0000000010 00000 1123455778899999
Q ss_pred HHHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHcCCCCCCceEEEEEecCCCCCCCCCCCCcccceeeeeeecccccc
Q 013997 242 KLEQLKQIAMQDKVLNKCTTFEALSAFVWRARCEALGMQPDQQTKLLFAVDGRSRFEPPLPEGFFGNGIVLTYSLSKAGE 321 (432)
Q Consensus 242 ~i~~Lk~~~~~~~~~~~~S~~d~l~A~lW~~i~~ar~~~~~~~~~l~~~vd~R~rl~p~lp~~Y~GN~~~~~~~~~~~~~ 321 (432)
..++|++.|.+.+ +|.+.++.|.+-..+.+-.+ .....+..+++.|..-+ -++.+|+++...........
T Consensus 314 ~~~~l~~~a~~~~----~T~~~~l~aa~a~~L~~~~~---~~dv~~g~~~~gR~~~~---~~~~vG~f~n~lplr~~~~~ 383 (520)
T 2jgp_A 314 LTEGLHQLAQATG----TTLYMVLLAAYNVLLAKYAG---QEDIIVGTPITGRSHAD---LEPIVGMFVNTLAMRNKPQR 383 (520)
T ss_dssp HHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHT---CSCEEEEEEECCCCSGG---GTTCCSCCCEEEEEEECCCT
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhcC---CCCeEEEeccCCCCchh---hhccEEeeeeeeeEEecCCC
Confidence 9999999998765 89999999876555555433 46789999999997621 24566777665554443332
Q ss_pred cccCCHHHHHHHHHHHHhh
Q 013997 322 LLTNPLSFTVGLVQNAVSM 340 (432)
Q Consensus 322 l~~~~l~~~A~~ir~ai~~ 340 (432)
+.++.++.+.+++.+.+
T Consensus 384 --~~~~~~~l~~v~~~~~~ 400 (520)
T 2jgp_A 384 --EKTFSEFLQEVKQNALD 400 (520)
T ss_dssp --TSBHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHH
Confidence 46788888888887765
No 8
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=98.75 E-value=4.2e-07 Score=92.25 Aligned_cols=289 Identities=10% Similarity=-0.026 Sum_probs=162.9
Q ss_pred CceeeCCcCcccc-------c-cceeEEEEecCCCCCChhHHHHHHHHHHhhhhhcccCCeEEeecCCCeEEEEecCCcc
Q 013997 29 KGLYFLNNLDQNI-------A-VIVRTCYCFKSDSKGNEDAAEVVKNALSKLLVQCYPLAGRLTISSAGKLIVNCTGEGA 100 (432)
Q Consensus 29 ~~~~~Ls~lD~~~-------~-~~~~~~~~f~~~~~~~~~~~~~L~~sL~~~l~~~p~LaGrl~~~~~G~~~i~~~~~gv 100 (432)
...+|||+.-+.+ + ......+.|+.+ ...+.++|++++.+++..+|.|--++...+ |.+. ......+
T Consensus 11 ~~~~Pls~~Q~~~~~~~~~~~~~~y~~~~~~~l~---g~ld~~~L~~A~~~lv~rh~~LRt~f~~~~-~~~~-~v~~~~~ 85 (493)
T 4hvm_A 11 PGLRRASFLQRGAWRWLREAPPAAAFAARGLLGS---GRIDDDRLAAAADEVLDAFPLLRVNFVDDD-GLWM-RTRENAD 85 (493)
T ss_dssp -CEEECCHHHHHHHHHHTTSCGGGGEEEEEEEEE---SSCCHHHHHHHHHHHHHHCGGGGEEEEESS-SEEE-EECSCCC
T ss_pred CCCCCCCHHHHHHHHHHhhCCCCcceeEEEEEEe---CCCCHHHHHHHHHHHHHhchhceeEEEccC-CEEE-EecCCCC
Confidence 5689999876632 1 112233344433 236899999999999999999999998754 5555 4322224
Q ss_pred EEEEEEccccccccCCCCCCCh-Hhhhccccc-CCCCCccCCCCcEEEEEEEeecCeEEEEeecceeccchhhHHHHHHH
Q 013997 101 VFVEAEASFGIEDIGDLTKPDP-LILGKLVYE-IPGAQHILQIPPLVVQVTKFKCGAFVIGMSMNHCMLDGLAAMEFMNS 178 (432)
Q Consensus 101 ~f~~a~~~~~~~~l~~~~~p~~-~~~~~l~~~-~~~~~~~~~~Pl~~vqvt~f~~GG~~l~~~~~H~v~Dg~~~~~fl~~ 178 (432)
.+.+.+ +... +.. ..+.+.+-. ....-+....|++.+.+....++...|.+.+||.++||.|+..|++.
T Consensus 86 ~~~~~d-------~~~~--~~~~~~~~~~~~~~~~~~fdl~~~pl~r~~l~~~~~~~~~l~l~~HH~i~Dg~S~~~l~~~ 156 (493)
T 4hvm_A 86 ALVRSD-------LRGH--PDPQARCVELLRADRDRPTDPERDPLVRLHLVRLSETDVVLGVVAHQMLLDARSRYMVLGA 156 (493)
T ss_dssp CEEEEE-------CTTS--SSHHHHHHHHHHHHHSSCCCTTTSCSEEEEEEECSSSEEEEEEEEETTTCCHHHHHHHHHH
T ss_pred CceEEE-------CCCC--CchHHHHHHHHHHHhcCCCCCCCCCeEEEEEEEECCCcEEEEEecchhhccHHHHHHHHHH
Confidence 443332 2111 111 112111110 00011234569999888766677789999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCccccCC--CCCcccC-CCCCcc-----ccccccCCccccccceEEEEEEECHHHHHHHHHHH
Q 013997 179 WGETARGLPLKVRPVLDRTILKSR--DPTKIEF-PHPEFD-----EIEDVSNTNKLYEEEMLYRYFCFGPEKLEQLKQIA 250 (432)
Q Consensus 179 wa~~~rg~~~~~~P~~dr~~l~~~--~~p~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~Lk~~~ 250 (432)
+.+++.|.++. .+..|-...... ....... ....|. ..+.+ ..............+.++.+..++|++.|
T Consensus 157 l~~~Y~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~~~l-~~~~~~~~~~~~~~~~l~~~~~~~l~~~a 234 (493)
T 4hvm_A 157 VWQAYYGRFRP-AQYRDFAEVADFHPLDRETVRVARHRWWSRRLPALPVR-GGDGGPVGPPETSRLRVPGSRWQALTEPG 234 (493)
T ss_dssp HHHHHTTCCCG-GGSBCGGGTTTCCTTCSHHHHHHHHHHHHHHGGGSCCC-C-------CCEEEEEEEEHHHHHHHHCC-
T ss_pred HHHHhCCCCCC-cCHHHHHHHHhhhhcccChhhHHHHHHHHHhccCCCCC-CCCCCCCCCCeeEEEEcCHHHHHHHHHHH
Confidence 99999876543 222111000000 0000000 000010 00000 00001112266788999999999999988
Q ss_pred hhCCCCCccc--hHHHHHHHHHHHHHHHcC-C-------CCCCceEEEEEecCCCCCCCCCCCCcccceeeeeeeccccc
Q 013997 251 MQDKVLNKCT--TFEALSAFVWRARCEALG-M-------QPDQQTKLLFAVDGRSRFEPPLPEGFFGNGIVLTYSLSKAG 320 (432)
Q Consensus 251 ~~~~~~~~~S--~~d~l~A~lW~~i~~ar~-~-------~~~~~~~l~~~vd~R~rl~p~lp~~Y~GN~~~~~~~~~~~~ 320 (432)
++.+ +| .+.++.|.+-..+.+-+. . .......+..+++.|..- --.+.+|.++......+...
T Consensus 235 ~~~~----vt~~~~~~l~aa~a~~L~~~~~~~~~~~~~~~g~~dv~~g~~~~gR~~~---~~~~~vG~f~n~lplr~~~~ 307 (493)
T 4hvm_A 235 GPLG----GNGSLAMAALTAWWLWTQGAGTGTDTGAGTGTGKDSLYLSTEVDLRDHL---QLGSVVGPLTDRVVFGVDLT 307 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHC----------------CEEEEEEEEEHHHHT---TCCSBCSCCEEEEEEEEECT
T ss_pred HHcC----CCchHHHHHHHHHHHHHHHhhhcccccccCcCCCCCEEEEeeccCCCCc---chhcCeEeeeceeEEEEecC
Confidence 7754 78 999999986555544310 0 235678899999999662 23567788776655554444
Q ss_pred ccccCCHHHHHHHHHHHHhh
Q 013997 321 ELLTNPLSFTVGLVQNAVSM 340 (432)
Q Consensus 321 ~l~~~~l~~~A~~ir~ai~~ 340 (432)
...+.++.+++..+++.+.+
T Consensus 308 ~~~~~t~~~~l~~v~~~~~~ 327 (493)
T 4hvm_A 308 GLREPSFRDLMSRTQAGFLD 327 (493)
T ss_dssp TCSSCBHHHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHH
Confidence 22246788888888887765
No 9
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=98.72 E-value=2.2e-07 Score=92.50 Aligned_cols=251 Identities=14% Similarity=0.076 Sum_probs=150.0
Q ss_pred hHHHHHHHHHHhhhhhcccCCeEEeecCCCeEEEEecCCccEEEEEEccccccccCCCCCCCh-Hhhhccccc-CCCCCc
Q 013997 60 DAAEVVKNALSKLLVQCYPLAGRLTISSAGKLIVNCTGEGAVFVEAEASFGIEDIGDLTKPDP-LILGKLVYE-IPGAQH 137 (432)
Q Consensus 60 ~~~~~L~~sL~~~l~~~p~LaGrl~~~~~G~~~i~~~~~gv~f~~a~~~~~~~~l~~~~~p~~-~~~~~l~~~-~~~~~~ 137 (432)
.+.++|++++.+++..+|.|--++...+ | .+ .....+.+. +.|+.. .+.. ..+.+.+-. ....-+
T Consensus 33 ld~~~L~~A~~~lv~rh~~LRt~f~~~~-~--~v-~~~~~~~~~-------~~d~~~--~~~~~~~~~~~~~~~~~~~fd 99 (436)
T 1l5a_A 33 LDTTLLLRALHLTVSEIDLFRARFSAQG-E--LY-WHPFSPPID-------YQDLSI--HLEAEPLAWRQIEQDLQRSST 99 (436)
T ss_dssp CCHHHHHHHHHHHHHTCGGGGEEECTTC-C--EE-ECSSCCCCE-------EEECTT--CTTHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHHHHhheeEEEEEecC-C--eE-CCCcCCCcc-------EEeCCC--CCCHHHHHHHHHHHHhcCCCC
Confidence 6899999999999999999999987543 4 22 222222221 122221 1111 011111100 000112
Q ss_pred cCCCCcEEEEEEEeecCeEEEEeecceeccchhhHHHHHHHHHHHhc----CCCCCCCC-CCC------CccccCCCCCc
Q 013997 138 ILQIPPLVVQVTKFKCGAFVIGMSMNHCMLDGLAAMEFMNSWGETAR----GLPLKVRP-VLD------RTILKSRDPTK 206 (432)
Q Consensus 138 ~~~~Pl~~vqvt~f~~GG~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r----g~~~~~~P-~~d------r~~l~~~~~p~ 206 (432)
....|++.+.+....++...|.+.+||.++||.|+..|++.+.+.+. |.++..++ .+. +..+... .
T Consensus 100 l~~~pl~r~~l~~~~~~~~~l~~~~HH~i~Dg~S~~~l~~~l~~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~ 176 (436)
T 1l5a_A 100 LIDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQSLLSGQTPTAAFKPYQSYLEEEAAYLTSH---R 176 (436)
T ss_dssp CBTSCSCEEEEEEEETTEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCHHHHHHHHHHHHTSH---H
T ss_pred cCCCCCeEEEEEEEcCCEEEEEEeehhheecHhHHHHHHHHHHHHHHHHhcCCCCCCCccCHHHHHHHHHHhhccH---h
Confidence 34569998888766677899999999999999999999999999987 54432211 110 0000000 0
Q ss_pred ccCCCCCcc-----ccc---cccCCccccccceEEEEEEECHHHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHcC
Q 013997 207 IEFPHPEFD-----EIE---DVSNTNKLYEEEMLYRYFCFGPEKLEQLKQIAMQDKVLNKCTTFEALSAFVWRARCEALG 278 (432)
Q Consensus 207 ~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~f~~~~~~i~~Lk~~~~~~~~~~~~S~~d~l~A~lW~~i~~ar~ 278 (432)
.. ....|. ..+ .++..............+.++++..++|++.|+..+ +|.+.++.|.+-..+.+-.
T Consensus 177 ~~-~~~~~W~~~l~~~~~~~~lp~~~~~~~~~~~~~~~~l~~~~~~~l~~~a~~~~----~t~~~~l~aa~~~~L~~~~- 250 (436)
T 1l5a_A 177 YW-QDKQFWQGYLREAPDLTLTSATYDPQLSHAVSLSYTLNSQLNHLLLKLANANQ----IGWPDALVALCALYLESAE- 250 (436)
T ss_dssp HH-HHHHHHHHHHHTSCCCCBCCTTCCGGGCCEEEEEEECCHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHS-
T ss_pred HH-HHHHHHHHHhcCCCCcccCCCCCCCCcccceeeEEecCHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHhh-
Confidence 00 000000 000 011010011234557888999999999999998865 8999999998555454432
Q ss_pred CCCCCceEEEEEecCCCCCCCCCCCCcccceeeeeeecccccccccCCHHHHHHHHHHHHhh
Q 013997 279 MQPDQQTKLLFAVDGRSRFEPPLPEGFFGNGIVLTYSLSKAGELLTNPLSFTVGLVQNAVSM 340 (432)
Q Consensus 279 ~~~~~~~~l~~~vd~R~rl~p~lp~~Y~GN~~~~~~~~~~~~~l~~~~l~~~A~~ir~ai~~ 340 (432)
. +...+..+++.|.. + --.+-+|+++........... +.++.+++..+++.+.+
T Consensus 251 --g-~dv~ig~~~~~R~~--~-~~~~~vG~f~n~lplr~~~~~--~~t~~~~l~~v~~~~~~ 304 (436)
T 1l5a_A 251 --P-DAPWLWLPFMNRWG--S-VAANVPGLMVNSLPLLRLSAQ--QTSLGNYLKQSGQAIRS 304 (436)
T ss_dssp --T-TCCEEEEEECCCTT--S-GGGGSCSCCCEEEEEECCCCT--TCBHHHHHHHHHHHHHH
T ss_pred --C-CceEEeeecccCCC--h-HHhcCcceEEEEEEEEEecCC--CCCHHHHHHHHHHHHHH
Confidence 3 67899999999975 2 224566776665544443332 45788888888888765
No 10
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=98.56 E-value=1.6e-05 Score=79.76 Aligned_cols=293 Identities=12% Similarity=0.054 Sum_probs=165.0
Q ss_pred CceeeCCcCcccc-----c-c-ceeEEEEecCCCCCChhHHHHHHHHHHhhhhhcccCCeEEeecCCCeEEEEecC--Cc
Q 013997 29 KGLYFLNNLDQNI-----A-V-IVRTCYCFKSDSKGNEDAAEVVKNALSKLLVQCYPLAGRLTISSAGKLIVNCTG--EG 99 (432)
Q Consensus 29 ~~~~~Ls~lD~~~-----~-~-~~~~~~~f~~~~~~~~~~~~~L~~sL~~~l~~~p~LaGrl~~~~~G~~~i~~~~--~g 99 (432)
...+|||+..+++ + . .....+.|+.. ...+.+.|+++|.+++...|.|--++...+++..++.... ..
T Consensus 15 ~~~~pls~~Q~~~~~~~~~~~~~y~~~~~~~l~---g~ld~~~L~~Al~~lv~rh~~LRt~f~~~~~~~~q~v~~~~~~~ 91 (466)
T 2xhg_A 15 AGNVPLTPIQKWFFGKNFTNTGHWNQSSVLYRP---EGFDPKVIQSVMDKIIEHHDALRMVYQHENGNVVQHNRGLGGQL 91 (466)
T ss_dssp CEECCCCHHHHHHHHTTCTTTTCBEEEEEEEET---TCCCHHHHHHHHHHHHHHSGGGGEEEECGGGCCEEEECCSSSCC
T ss_pred CCCCCCCHHHHHHHhCCCCCcCcceeEEEEEcC---CCCCHHHHHHHHHHHHHhChHhheEEecCCCceeeecccccccc
Confidence 4678888876522 1 1 22333344433 2368999999999999999999999986543333333321 22
Q ss_pred cEEEEEEccccccccCCCCCCChHhhhcccccCCCCCccCCCCcEEEEEEEeecCeEEEEeecceeccchhhHHHHHHHH
Q 013997 100 AVFVEAEASFGIEDIGDLTKPDPLILGKLVYEIPGAQHILQIPPLVVQVTKFKCGAFVIGMSMNHCMLDGLAAMEFMNSW 179 (432)
Q Consensus 100 v~f~~a~~~~~~~~l~~~~~p~~~~~~~l~~~~~~~~~~~~~Pl~~vqvt~f~~GG~~l~~~~~H~v~Dg~~~~~fl~~w 179 (432)
+.+.+.+ +...... .+.+..+.-.....-+....|++.+.+....++.. |.+.+||.++||.|+..|++.+
T Consensus 92 ~~~~~~d-------~~~~~~~-~~~~~~~~~~~~~~fdl~~~pl~r~~l~~~~~~~~-l~l~~HH~i~Dg~S~~~l~~el 162 (466)
T 2xhg_A 92 YDFFSYN-------LTAQPDV-QQAIEAETQRLHSSMNLQEGPLVKVALFQTLHGDH-LFLAIHHLVVDGISWRILFEDL 162 (466)
T ss_dssp CEEEEEE-------CTTCSCH-HHHHHHHHHHHHTTCCTTTCCCEEEEEEEETTEEE-EEEEEEGGGCCHHHHHHHHHHH
T ss_pred ceeEEEe-------cCCcccH-HHHHHHHHHHHHhccCCCCCCeEEEEEEEcCCCCE-EEEEeeeeeechhhHHHHHHHH
Confidence 3333222 2110000 00111110000001123456999888876655444 7799999999999999999999
Q ss_pred HHHhc----CCCCCCCCC-CC-Cccc---cC-CCCCcccCCCCCcc-------ccccccC---CccccccceEEEEEEEC
Q 013997 180 GETAR----GLPLKVRPV-LD-RTIL---KS-RDPTKIEFPHPEFD-------EIEDVSN---TNKLYEEEMLYRYFCFG 239 (432)
Q Consensus 180 a~~~r----g~~~~~~P~-~d-r~~l---~~-~~~p~~~~~~~~~~-------~~~~~~~---~~~~~~~~~~~~~f~~~ 239 (432)
.++++ |.++..+|. .. ++.. .. ...+... ....|. +.+.++. .............+.++
T Consensus 163 ~~~Y~~~~~g~~~~l~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~W~~~l~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~ 241 (466)
T 2xhg_A 163 ATGYAQALAGQAISLPEKTDSFQSWSQWLQEYANEADLL-SEIPYWESLESQAKNVSLPKDYEVTDCKQKSVRNMRIRLH 241 (466)
T ss_dssp HHHHHHHHTTCCCCCCCCCSCHHHHHHHHHHHTTSHHHH-TTHHHHHHHHHHCCCCCCCCSSCCSSCBGGGEEEEEEECC
T ss_pred HHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhcCccch-hhhHHHHHhhccCCcccCCccccccccccccceEEEEEcC
Confidence 98885 433222210 00 0000 00 0000000 000010 0000100 00011234567889999
Q ss_pred HHHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHcCCCCCCceEEEEEecCCCCCCC-CCCCCcccceeeeeeeccc
Q 013997 240 PEKLEQLKQIAMQDKVLNKCTTFEALSAFVWRARCEALGMQPDQQTKLLFAVDGRSRFEP-PLPEGFFGNGIVLTYSLSK 318 (432)
Q Consensus 240 ~~~i~~Lk~~~~~~~~~~~~S~~d~l~A~lW~~i~~ar~~~~~~~~~l~~~vd~R~rl~p-~lp~~Y~GN~~~~~~~~~~ 318 (432)
++..++|++.+.... .+|.++++.|.+-..+.+-.+ .....+.++++.|....+ +--.+-+|+++......+.
T Consensus 242 ~~~~~~l~~~~~~~~---~~t~~~~llaa~~~~l~~~~~---~~dv~ig~~~~gR~~~~~~~~~~~~vG~f~n~lplr~~ 315 (466)
T 2xhg_A 242 PEETEQLLKHANQAY---QTEINDLLLAALGLAFAEWSK---LAQIVIHLEGHGREDIIEQANVARTVGWFTSQYPVLLD 315 (466)
T ss_dssp HHHHHHHHHTGGGTT---TCCHHHHHHHHHHHHHHHHHC---CSEEEEEEEECCCCSCSTTCCCTTCCSCCCEEEEEEEE
T ss_pred HHHHHHHHHHhHHhh---CCCHHHHHHHHHHHHHHHHhC---CCceEEEecCCCCCccccCCCccccccceeeeccEEEe
Confidence 999999998875432 378999999886666655543 456889999999986421 1124566776655544443
Q ss_pred ccccccCCHHHHHHHHHHHHhhcC
Q 013997 319 AGELLTNPLSFTVGLVQNAVSMVT 342 (432)
Q Consensus 319 ~~~l~~~~l~~~A~~ir~ai~~~~ 342 (432)
... +.++.+++..|++.+..+.
T Consensus 316 ~~~--~~~~~~~l~~v~~~~~~~~ 337 (466)
T 2xhg_A 316 LKQ--TAPLSDYIKLTKENMRKIP 337 (466)
T ss_dssp CSC--CCSHHHHHHHHHHHHHHSG
T ss_pred cCC--CCCHHHHHHHHHHHHHhCc
Confidence 332 4679999999999988763
No 11
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=98.39 E-value=4.6e-05 Score=86.41 Aligned_cols=258 Identities=13% Similarity=0.031 Sum_probs=154.2
Q ss_pred hHHHHHHHHHHhhhhhcccCCeEEeecCCC-eEEEEecCCccEEEEEEccccccccCCCCCCC-hHhhhcccc---cCCC
Q 013997 60 DAAEVVKNALSKLLVQCYPLAGRLTISSAG-KLIVNCTGEGAVFVEAEASFGIEDIGDLTKPD-PLILGKLVY---EIPG 134 (432)
Q Consensus 60 ~~~~~L~~sL~~~l~~~p~LaGrl~~~~~G-~~~i~~~~~gv~f~~a~~~~~~~~l~~~~~p~-~~~~~~l~~---~~~~ 134 (432)
.+.++|++|+.+++...+.|--++....+| ..++........+.+. |+.....+. .+.+..++- ..+.
T Consensus 47 ld~~~l~~A~~~lv~rH~~LRt~f~~~~~~~p~Q~v~~~~~~~~~~~-------d~~~~~~~~~~~~~~~~~~~~~~~~f 119 (1304)
T 2vsq_A 47 LNIKCLEESMNVIMDRYDVFRTVFIHEKVKRPVQVVLKKRQFHIEEI-------DLTHLTGSEQTAKINEYKEQDKIRGF 119 (1304)
T ss_dssp CCHHHHHHHHHHHHHHCGGGGEEEECSSCSSCEEEEESCCCCCEEEE-------ECTTSCHHHHHHHHHHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHHHHhhhhceEEEEEcCCCeEEEEECCCCCCceEEE-------ECCCCCchhHHHHHHHHHHHHhcCCC
Confidence 689999999999999999999999876544 3454444433333222 222110000 001111110 0111
Q ss_pred CCccCCCCcEEEEEEEeecCeEEEEeecceeccchhhHHHHHHHHHHHhcC----CCCCCCC---CCCCc-cccCCCCCc
Q 013997 135 AQHILQIPPLVVQVTKFKCGAFVIGMSMNHCMLDGLAAMEFMNSWGETARG----LPLKVRP---VLDRT-ILKSRDPTK 206 (432)
Q Consensus 135 ~~~~~~~Pl~~vqvt~f~~GG~~l~~~~~H~v~Dg~~~~~fl~~wa~~~rg----~~~~~~P---~~dr~-~l~~~~~p~ 206 (432)
+....|++.+.+....++...|.+.+||.++||.|+..+++.+.+++++ .++..+| +-|-. .+... .
T Consensus 120 --dl~~~pl~r~~l~~~~~~~~~l~~~~HHii~DG~S~~~l~~el~~~Y~~~~~g~~~~l~~~~~y~d~~~~~~~~---~ 194 (1304)
T 2vsq_A 120 --DLTRDIPMRAAIFKKAEESFEWVWSYHHIILDGWCFGIVVQDLFKVYNALREQKPYSLPPVKPYKDYIKWLEKQ---D 194 (1304)
T ss_dssp --CTTTSCSEEEEEEEEETTEEEEEEEEEGGGCCHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCTHHHHHHHHTS---C
T ss_pred --CCCCCCcEEEEEEEECCCcEEEEEecCceeechhhHHHHHHHHHHHHHHhhcCCCCCCCCcccHHHHHHHHhcc---h
Confidence 2345699999988777778999999999999999999999999988863 3322222 11100 00000 0
Q ss_pred ccCCCCCcc-----cc---ccccCC--ccccccceEEEEEEECHHHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHH
Q 013997 207 IEFPHPEFD-----EI---EDVSNT--NKLYEEEMLYRYFCFGPEKLEQLKQIAMQDKVLNKCTTFEALSAFVWRARCEA 276 (432)
Q Consensus 207 ~~~~~~~~~-----~~---~~~~~~--~~~~~~~~~~~~f~~~~~~i~~Lk~~~~~~~~~~~~S~~d~l~A~lW~~i~~a 276 (432)
.. ....|. .. ..++.. ............+.++++..++||+.|++.+ +|.+.+|.|.+-..+.|-
T Consensus 195 ~~-~~~~yW~~~L~~~~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~a~~~~----~T~~~vllaa~a~~L~r~ 269 (1304)
T 2vsq_A 195 KQ-ASLRYWREYLEGFEGQTTFAEQRKKQKDGYEPKELLFSPSEAETKAFTELAKSQH----TTLSTALQAVWSVLISRY 269 (1304)
T ss_dssp HH-HHHHHHHHHHTTCCCCCTTTTTCCCSSCCCCEEEEEECCCHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHH
T ss_pred hh-HHHHHHHHHhCCCCccccCCCCCCccccccCcceEEEecCHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHh
Confidence 00 000010 00 000000 0011233456778899999999999998865 899999998754444444
Q ss_pred cCCCCCCceEEEEEecCCCCCCCCCCCCcccceeeeeeecccccccccCCHHHHHHHHHHHHhh
Q 013997 277 LGMQPDQQTKLLFAVDGRSRFEPPLPEGFFGNGIVLTYSLSKAGELLTNPLSFTVGLVQNAVSM 340 (432)
Q Consensus 277 r~~~~~~~~~l~~~vd~R~rl~p~lp~~Y~GN~~~~~~~~~~~~~l~~~~l~~~A~~ir~ai~~ 340 (432)
- ..+...+..+++.|..-.+.+ ++.+|+.+.........+. +.++.++.+.+++.+.+
T Consensus 270 t---g~~dvv~G~pvsgR~~~~~~~-~~~vG~fvntlplr~~~~~--~~s~~~ll~~v~~~~~~ 327 (1304)
T 2vsq_A 270 Q---QSGDLAFGTVVSGRPAEIKGV-EHMVGLFINVVPRRVKLSE--GITFNGLLKRLQEQSLQ 327 (1304)
T ss_dssp H---TCSEEEEEEEECCCCTTSTTG-GGCCSSCCEEEEEEEECCT--TCBHHHHHHHHHHHHHH
T ss_pred c---CCCCEEEEEEeCCCCccchhh-hcccccceeEEEEEecCCC--CCcHHHHHHHHHHHHHH
Confidence 3 356789999999997632222 4556666555444433332 56789999999887765
No 12
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*
Probab=98.33 E-value=0.00023 Score=72.26 Aligned_cols=268 Identities=11% Similarity=0.045 Sum_probs=144.4
Q ss_pred ChhHHHHHHHHHHhhhhhcccCCeEEeecCCCeEEEEe--c-CC-c------cEEEEEEccccccccCCCCCCChHhh--
Q 013997 58 NEDAAEVVKNALSKLLVQCYPLAGRLTISSAGKLIVNC--T-GE-G------AVFVEAEASFGIEDIGDLTKPDPLIL-- 125 (432)
Q Consensus 58 ~~~~~~~L~~sL~~~l~~~p~LaGrl~~~~~G~~~i~~--~-~~-g------v~f~~a~~~~~~~~l~~~~~p~~~~~-- 125 (432)
.....++||.|+-.+--++|-+|+++..+.++.....| . ++ - --|.+.+.+.+-+|+.. .+
T Consensus 71 ~~~l~~~lr~AW~~lR~~hP~iA~~v~~d~~~~~~~~Y~~~~~~~~~~~Wl~~Tf~v~~~~~t~~e~~~-------~~~~ 143 (519)
T 3fot_A 71 LQNLKEMFELALLDARFEHPECACTVSWDDEVPAIITYESPESNESARDWARGCIHVQPTAKSALDLWS-------EMEE 143 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGCEEECCSSSSCEEEEECCSSHHHHHHHHHHHEEEEECSCCHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCcceeEEeeCCCCcccEEEecCCCHHHHHHHHHhcEEEeCCCCCHHHHHH-------hhhh
Confidence 46788999999999999999999999987444444444 1 11 0 12333333333333200 00
Q ss_pred hcc-cccCCCCCccCCCCcEEEEEEE--------eec-CeEEEEeecceeccchhhHHHHHHHHHHHhcCCC----CCCC
Q 013997 126 GKL-VYEIPGAQHILQIPPLVVQVTK--------FKC-GAFVIGMSMNHCMLDGLAAMEFMNSWGETARGLP----LKVR 191 (432)
Q Consensus 126 ~~l-~~~~~~~~~~~~~Pl~~vqvt~--------f~~-GG~~l~~~~~H~v~Dg~~~~~fl~~wa~~~rg~~----~~~~ 191 (432)
..+ ....+ ..+...+.+-. +.. .-.-|.+.+||.++||.|...|++.+-+...... ....
T Consensus 144 ~r~~~~~~~------p~~~~~l~~v~~~~~~~~~~p~~~~~~lv~~~~H~~~DG~g~~~f~~~ll~~L~~~~~~~~~~~~ 217 (519)
T 3fot_A 144 GRAAANDNT------PSKSIELFLLSDVSTDSTPIPQDATVEILFHSNHLFWDGIGCRKFVGDLFRLVGSYIGRSDSREM 217 (519)
T ss_dssp HHHHTC-CC------CCCSCEEEEEESSSSTTSCCCTTCEEEEEEEECGGGCCHHHHHHHHHHHHHHHTTSTTC-CGGGS
T ss_pred hhcccccCC------CccceEEEEEeccccccccCCCCceEEEEEEeCceeEchHhHHHHHHHHHHHHHhhhccCCccCC
Confidence 000 00000 00111111100 111 0367888999999999999999999888776311 1112
Q ss_pred CCCC-CccccCCCCCccc--CCCC------Cccc-c--------cc--ccC-CccccccceEEEEEEECHHHHHHHHHHH
Q 013997 192 PVLD-RTILKSRDPTKIE--FPHP------EFDE-I--------ED--VSN-TNKLYEEEMLYRYFCFGPEKLEQLKQIA 250 (432)
Q Consensus 192 P~~d-r~~l~~~~~p~~~--~~~~------~~~~-~--------~~--~~~-~~~~~~~~~~~~~f~~~~~~i~~Lk~~~ 250 (432)
|.++ ..-.. +-+|... ...+ +... . .. .++ +....+..-....+.|++++.++|++.|
T Consensus 218 ~~~~~g~E~~-~L~P~~e~~~~~p~~~~~~e~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ls~~~t~~L~~~c 296 (519)
T 3fot_A 218 KKIQWGQEIK-NLSPPVVDSLKLDINTLGSEFDDKCTEYTSALVANYKSRGMKFQPGLALPRCVIHKLSADESIDIVKAV 296 (519)
T ss_dssp CCCCTTTTGG-GSCCCTGGGBSSCGGGCCHHHHHHHHHHHHHHHHHHHSCCSBCCCCCCCEEEEEEECCHHHHHHHHHHH
T ss_pred CcCCCCcccc-cCCcCHHHHhCCCCCCCCHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCcceEEEEcCHHHHHHHHHHH
Confidence 2222 10000 1111111 0111 0000 0 00 000 1001112334578899999999999999
Q ss_pred hhCCCCCccchHHHHHHHHHHHHHHHcC---CCCCCceEEEEEecCCCCCCCCCCCCcccceeeeeeecccc-cc-----
Q 013997 251 MQDKVLNKCTTFEALSAFVWRARCEALG---MQPDQQTKLLFAVDGRSRFEPPLPEGFFGNGIVLTYSLSKA-GE----- 321 (432)
Q Consensus 251 ~~~~~~~~~S~~d~l~A~lW~~i~~ar~---~~~~~~~~l~~~vd~R~rl~p~lp~~Y~GN~~~~~~~~~~~-~~----- 321 (432)
++..+ ..+|.+.+|.|.+-.++.+... ........+.++||+|+++.++...+|+|.+........+. ..
T Consensus 297 k~~~~-~g~Tvt~~l~Aa~~~al~~~~~~~~~~~~~~~~~~~pvnlR~~l~~~~~~n~~~~~~~~~~~~v~~i~~~~~~~ 375 (519)
T 3fot_A 297 KTRLG-PGFTISHLTQAAIVLALLDHLKPNDLSDDEVFISPTSVDGRRWLREDIASNFYAMCQTAAVVRIENLKSITVSH 375 (519)
T ss_dssp HHHTC-TTCCHHHHHHHHHHHHHHHHC----CCTTCCEEEEEEEECGGGBCHHHHTSCCSCCEEEEEEEECCGGGGCCCT
T ss_pred HhcCC-CCeeHHHHHHHHHHHHHHhhcCCcccCCCccEEEEeeeeccccCCCcccccccceeeeeeeeEecCcccccccc
Confidence 98611 2489999998887766666422 11234678899999999997655567888877765443211 11
Q ss_pred ----cccC-CHHHHHHHHHHHHhh
Q 013997 322 ----LLTN-PLSFTVGLVQNAVSM 340 (432)
Q Consensus 322 ----l~~~-~l~~~A~~ir~ai~~ 340 (432)
+..+ .+.++|+.+++....
T Consensus 376 ~~~e~~~~~~~~~~ar~l~~~y~~ 399 (519)
T 3fot_A 376 KDEKELQVRALESACRNIKKSYRQ 399 (519)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHhHHHHHHHHHHHHhhc
Confidence 1101 157777888776665
No 13
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=75.52 E-value=1.9 Score=37.93 Aligned_cols=44 Identities=16% Similarity=0.333 Sum_probs=32.6
Q ss_pred CCcEEEEEEEeecCe--EEEEeecceeccchhhHHHHHHHHHHHhc
Q 013997 141 IPPLVVQVTKFKCGA--FVIGMSMNHCMLDGLAAMEFMNSWGETAR 184 (432)
Q Consensus 141 ~Pl~~vqvt~f~~GG--~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r 184 (432)
.|++.+--..=.+|. +-|++++||.+.||.-...|++.+.+.+.
T Consensus 164 ~PIi~~G~~~~~~~~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le 209 (213)
T 3cla_A 164 APIITMAKYQQEGDRLLLPLSVQVHHAVCDGFHVARFINRLQELCN 209 (213)
T ss_dssp SCEEEEECCEEETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred ccEEEeeEEEEECCeEEEEEEEEEcccccChHHHHHHHHHHHHHHH
Confidence 477754221112333 78899999999999999999999988764
No 14
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=74.54 E-value=2.1 Score=37.80 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=25.6
Q ss_pred EEEEeecceeccchhhHHHHHHHHHHHh
Q 013997 156 FVIGMSMNHCMLDGLAAMEFMNSWGETA 183 (432)
Q Consensus 156 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~ 183 (432)
+-|++++||.+.||.-...|++.+.+.+
T Consensus 189 m~lsls~DHRvvDG~~aa~Fl~~lk~~l 216 (217)
T 2i9d_A 189 MPIAMTIHHGFIDGHHLSLFYKKVEDFL 216 (217)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEecchhhChHHHHHHHHHHHHHh
Confidence 6889999999999999999999998764
No 15
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=74.08 E-value=2.2 Score=37.74 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=32.5
Q ss_pred CCcEEEEEEEeecCe--EEEEeecceeccchhhHHHHHHHHHHHhc
Q 013997 141 IPPLVVQVTKFKCGA--FVIGMSMNHCMLDGLAAMEFMNSWGETAR 184 (432)
Q Consensus 141 ~Pl~~vqvt~f~~GG--~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r 184 (432)
.|++.+--..-.+|. +-|++++||.+.||.-...|++.+.+.+.
T Consensus 168 ~pIi~~G~~~~~~~r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le 213 (219)
T 1q23_A 168 APVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCD 213 (219)
T ss_dssp SCEEEECCCEEETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEecccEEEECCcEEEEEEEEEEchhhChHHHHHHHHHHHHHHh
Confidence 476654322112333 78899999999999999999999988764
No 16
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=72.04 E-value=2.7 Score=37.67 Aligned_cols=29 Identities=14% Similarity=0.406 Sum_probs=27.1
Q ss_pred EEEEeecceeccchhhHHHHHHHHHHHhc
Q 013997 156 FVIGMSMNHCMLDGLAAMEFMNSWGETAR 184 (432)
Q Consensus 156 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r 184 (432)
+-|++++||.+.||.-...|++.+.+.+.
T Consensus 204 m~lsls~DHRviDGa~aa~Fl~~lk~~le 232 (239)
T 3b8k_A 204 MSVTLSCDHRVVDGAVGAQWLAEFRKYLE 232 (239)
T ss_dssp EEEEECCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcceeechHHHHHHHHHHHHHHh
Confidence 78999999999999999999999998775
No 17
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=70.08 E-value=3 Score=37.19 Aligned_cols=30 Identities=20% Similarity=0.434 Sum_probs=27.4
Q ss_pred EEEEeecceeccchhhHHHHHHHHHHHhcC
Q 013997 156 FVIGMSMNHCMLDGLAAMEFMNSWGETARG 185 (432)
Q Consensus 156 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~rg 185 (432)
+-|+++++|.+.||.-...|++.+.+.+..
T Consensus 196 m~lsls~DHRviDGa~aa~Fl~~lk~~le~ 225 (233)
T 1scz_A 196 MYLALSYDHRLIDGRESVGFLVTIKELLED 225 (233)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEcceeechHHHHHHHHHHHHHHhC
Confidence 669999999999999999999999988753
No 18
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=70.07 E-value=3 Score=37.48 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=27.0
Q ss_pred EEEEeecceeccchhhHHHHHHHHHHHhc
Q 013997 156 FVIGMSMNHCMLDGLAAMEFMNSWGETAR 184 (432)
Q Consensus 156 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r 184 (432)
+-|+++++|.+.||.-...|++.+.+.+.
T Consensus 208 m~lsls~DHRviDGa~aa~Fl~~lk~~le 236 (243)
T 1dpb_A 208 LPLSLSYDCRVINGAAAARFTKRLGDLLA 236 (243)
T ss_dssp EEEEEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECcccccHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999998875
No 19
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=69.51 E-value=2.7 Score=37.28 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=27.5
Q ss_pred EEEEeecceeccchhhHHHHHHHHHHHhcC
Q 013997 156 FVIGMSMNHCMLDGLAAMEFMNSWGETARG 185 (432)
Q Consensus 156 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~rg 185 (432)
+-|+++++|.+.||.-...|++.+.+....
T Consensus 187 m~lsls~DHRviDGa~aa~Fl~~l~~~le~ 216 (224)
T 3rqc_A 187 MYLSLSCDHRLIDGAVATRFIVDLKKVIED 216 (224)
T ss_dssp CCEEEEEETTTSCHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEeccceecHHHHHHHHHHHHHHHhC
Confidence 568999999999999999999999998864
No 20
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=68.34 E-value=3.4 Score=37.57 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=26.9
Q ss_pred EEEEeecceeccchhhHHHHHHHHHHHhc
Q 013997 156 FVIGMSMNHCMLDGLAAMEFMNSWGETAR 184 (432)
Q Consensus 156 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r 184 (432)
+-|+++++|.+.||.-...|++.+.+.+.
T Consensus 224 m~lsls~DHRviDGa~aa~Fl~~lk~~Le 252 (262)
T 2ii3_A 224 MNVSWSADHRIIDGATVSRFSNLWKSYLE 252 (262)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECcceecHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999998875
No 21
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=62.44 E-value=5.2 Score=36.19 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=27.6
Q ss_pred EEEEeecceeccchhhHHHHHHHHHHHhcC
Q 013997 156 FVIGMSMNHCMLDGLAAMEFMNSWGETARG 185 (432)
Q Consensus 156 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~rg 185 (432)
+-|+++++|.+.||.-...|++.+.+.+..
T Consensus 210 m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~ 239 (256)
T 3mae_A 210 VNLCLSIDHRILDGLLAGKFLQAIKANVEK 239 (256)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEccccccHHHHHHHHHHHHHHHhC
Confidence 459999999999999999999999999864
No 22
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=61.36 E-value=5.6 Score=35.84 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=27.5
Q ss_pred EEEEeecceeccchhhHHHHHHHHHHHhcC
Q 013997 156 FVIGMSMNHCMLDGLAAMEFMNSWGETARG 185 (432)
Q Consensus 156 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~rg 185 (432)
+-|+++++|.+.||.-...|++.|.+.+..
T Consensus 205 m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~ 234 (250)
T 3l60_A 205 MTLTCVFDHRVVDGAQVAQFMCELRDLIES 234 (250)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHS
T ss_pred eEEEEEecccccCHHHHHHHHHHHHHHHhC
Confidence 568999999999999999999999998864
No 23
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=56.66 E-value=17 Score=28.09 Aligned_cols=46 Identities=28% Similarity=0.478 Sum_probs=36.1
Q ss_pred eEEEEecCCCCCChhHHHHHHHHHHhhhhhcccCCeEEeec-CCCeEEEEecC
Q 013997 46 RTCYCFKSDSKGNEDAAEVVKNALSKLLVQCYPLAGRLTIS-SAGKLIVNCTG 97 (432)
Q Consensus 46 ~~~~~f~~~~~~~~~~~~~L~~sL~~~l~~~p~LaGrl~~~-~~G~~~i~~~~ 97 (432)
.+.+.|+.+ +.+.|+++|...+.+-..+||.+... .++++.|...+
T Consensus 84 vm~i~f~gd------dlea~ekalkemirqarkfagtvtytl~gn~l~i~itg 130 (170)
T 4hhu_A 84 VMVIVFEGD------DLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVITG 130 (170)
T ss_dssp EEEEEEECS------CHHHHHHHHHHHHHHHHHTTCEEEEEECSSEEEEEEES
T ss_pred EEEEEEecC------cHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEeC
Confidence 356677764 78899999999999999999999875 34577777653
No 24
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=53.52 E-value=17 Score=28.09 Aligned_cols=44 Identities=27% Similarity=0.465 Sum_probs=35.0
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHhhhhhcccCCeEEeec-CCCeEEEEec
Q 013997 47 TCYCFKSDSKGNEDAAEVVKNALSKLLVQCYPLAGRLTIS-SAGKLIVNCT 96 (432)
Q Consensus 47 ~~~~f~~~~~~~~~~~~~L~~sL~~~l~~~p~LaGrl~~~-~~G~~~i~~~ 96 (432)
+.+.|+.+ +.+.|+++|...+.+-..+||.+... .++++.|...
T Consensus 4 m~i~f~gd------dlea~ekalkemirqarkfagtvtytl~gn~l~i~it 48 (170)
T 4hhu_A 4 MVIVFEGD------DLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVIT 48 (170)
T ss_dssp EEEEEECS------CHHHHHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEE
T ss_pred EEEEEecC------cHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEe
Confidence 45677764 78899999999999999999999875 3356777764
No 25
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=53.04 E-value=40 Score=22.91 Aligned_cols=38 Identities=29% Similarity=0.424 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHhhhhhcccCCeEEeecCC-CeEEEEecC
Q 013997 60 DAAEVVKNALSKLLVQCYPLAGRLTISSA-GKLIVNCTG 97 (432)
Q Consensus 60 ~~~~~L~~sL~~~l~~~p~LaGrl~~~~~-G~~~i~~~~ 97 (432)
++.+.++++|...+.+-..+||.+...-+ +.++|+..+
T Consensus 10 ddleafekalkemirqarkfagtvtytldgndleiritg 48 (85)
T 2kl8_A 10 DDLEAFEKALKEMIRQARKFAGTVTYTLDGNDLEIRITG 48 (85)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTCEEEEEECSSCEEEEEES
T ss_pred CcHHHHHHHHHHHHHHHHhhcceEEEEecCCeeEEEEec
Confidence 37889999999999999999999987544 467877753
No 26
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=42.23 E-value=5.3 Score=39.07 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=0.0
Q ss_pred EEEEeecceeccchhhHHHHHHHHHHHhcC
Q 013997 156 FVIGMSMNHCMLDGLAAMEFMNSWGETARG 185 (432)
Q Consensus 156 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~rg 185 (432)
+-|++++||.+.||.-...|++.+.+.+..
T Consensus 391 m~lsls~DHRviDG~~aa~Fl~~lk~~Le~ 420 (428)
T 3dva_I 391 LALSLSFDHRMIDGATAQKALNHIKRLLSD 420 (428)
T ss_dssp ------------------------------
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHHhC
Confidence 459999999999999999999999887753
No 27
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=41.22 E-value=77 Score=22.11 Aligned_cols=47 Identities=9% Similarity=-0.061 Sum_probs=38.9
Q ss_pred cceEEEEEEECHHHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHcCC
Q 013997 229 EEMLYRYFCFGPEKLEQLKQIAMQDKVLNKCTTFEALSAFVWRARCEALGM 279 (432)
Q Consensus 229 ~~~~~~~f~~~~~~i~~Lk~~~~~~~~~~~~S~~d~l~A~lW~~i~~ar~~ 279 (432)
.......+++|.+.-++|+..|..++ .|.|.-+...|-+++.+-..+
T Consensus 17 r~~~kf~LRlP~eL~~~L~~~A~~~g----rSlNaeIv~~Le~sl~~e~~l 63 (69)
T 3qoq_A 17 RTADKFVVRLPEGMREQIAEVARSHH----RSMNSEIIARLEQSLLQEGAL 63 (69)
T ss_dssp TTSEEEEEECCTTHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHTC-
T ss_pred ccCCceEEECCHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHcCCc
Confidence 34556799999999999999999876 899999999998888766544
No 28
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=39.81 E-value=26 Score=18.54 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=15.3
Q ss_pred CccchHHHHHHHHHHHHH
Q 013997 257 NKCTTFEALSAFVWRARC 274 (432)
Q Consensus 257 ~~~S~~d~l~A~lW~~i~ 274 (432)
+-+++.|-|+-++|+.+.
T Consensus 6 svftsqdylsdhlwraln 23 (26)
T 2xl1_A 6 SVFTSQDYLSDHLWRALN 23 (26)
T ss_pred ceeecHHHHHHHHHHHHh
Confidence 457889999999999875
No 29
>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regula METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori} SCOP: a.43.1.3
Probab=39.56 E-value=73 Score=20.36 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.2
Q ss_pred EEEEEEECHHHHHHHHHHHhhCC
Q 013997 232 LYRYFCFGPEKLEQLKQIAMQDK 254 (432)
Q Consensus 232 ~~~~f~~~~~~i~~Lk~~~~~~~ 254 (432)
....|+|++++-+.|++.+.++.
T Consensus 2 ~~Vs~Y~SkEey~~L~klA~eE~ 24 (55)
T 1x93_A 2 RAVSLYFSDEQYQKLEKMANEEE 24 (55)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTT
T ss_pred ceEEEEecHHHHHHHHHHHHHHH
Confidence 35689999999999999998875
No 30
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=33.42 E-value=99 Score=20.07 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=35.4
Q ss_pred ceEEEEEEECHHHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHH
Q 013997 230 EMLYRYFCFGPEKLEQLKQIAMQDKVLNKCTTFEALSAFVWRARCEA 276 (432)
Q Consensus 230 ~~~~~~f~~~~~~i~~Lk~~~~~~~~~~~~S~~d~l~A~lW~~i~~a 276 (432)
+.....+++|.+--++|+..+..++ .|.|.-+...+-+++-+.
T Consensus 6 ~~~~~~lRlp~eL~~~l~~~A~~~g----rS~N~~i~~~L~~~l~~~ 48 (53)
T 1baz_A 6 KMPQVNLRWPREVLDLVRKVAEENG----RSVNSEIYQRVMESFKKE 48 (53)
T ss_dssp CSCEEEEECCHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHT
T ss_pred cCCeeEEECCHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHhhc
Confidence 3456789999999999999999876 799998888887776544
No 31
>2an7_A Protein PARD; bacterial antidote, ribbon-helix-helix, DNA-binding motif, plasmid addiction, DNA binding protein; NMR {Escherichia coli}
Probab=27.44 E-value=97 Score=22.21 Aligned_cols=35 Identities=14% Similarity=-0.022 Sum_probs=28.4
Q ss_pred eEEEEEEECHHHHHHHHHHHhhCCCCCccchHHHHHHHH
Q 013997 231 MLYRYFCFGPEKLEQLKQIAMQDKVLNKCTTFEALSAFV 269 (432)
Q Consensus 231 ~~~~~f~~~~~~i~~Lk~~~~~~~~~~~~S~~d~l~A~l 269 (432)
+....|.+|.++=++||..+...+ +|.++.+.-++
T Consensus 1 MSrLTIrLpd~qH~rLKalAa~qG----~SInqli~E~l 35 (83)
T 2an7_A 1 MSRLTIDMTDQQHQSLKALAALQG----KTIKQYALERL 35 (83)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHT----SCHHHHHHHHT
T ss_pred CceeeEeCCHHHHHHHHHHHHHcC----CcHHHHHHHHc
Confidence 356789999999999999998876 67777776654
No 32
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=25.57 E-value=1.3e+02 Score=19.01 Aligned_cols=42 Identities=12% Similarity=-0.051 Sum_probs=33.6
Q ss_pred ceEEEEEEECHHHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHHH
Q 013997 230 EMLYRYFCFGPEKLEQLKQIAMQDKVLNKCTTFEALSAFVWRARCE 275 (432)
Q Consensus 230 ~~~~~~f~~~~~~i~~Lk~~~~~~~~~~~~S~~d~l~A~lW~~i~~ 275 (432)
......++++.+..++|...|...+ +|..++|.-.+-..+..
T Consensus 8 ~~~~i~vrl~~el~~~l~~~a~~~g----~s~s~~ir~ai~~~l~~ 49 (55)
T 2k9i_A 8 NGIKLGVYIPQEWHDRLMEIAKEKN----LTLSDVCRLAIKEYLDN 49 (55)
T ss_dssp CCEEEEEEECHHHHHHHHHHHHHHT----CCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEcCHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHH
Confidence 4567799999999999999998765 68888888777655543
No 33
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=24.90 E-value=1.2e+02 Score=21.55 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=34.0
Q ss_pred cceEEEEEEECHHHHHHHHHHHhhCCCCCccchHHHHHHHHHHHH
Q 013997 229 EEMLYRYFCFGPEKLEQLKQIAMQDKVLNKCTTFEALSAFVWRAR 273 (432)
Q Consensus 229 ~~~~~~~f~~~~~~i~~Lk~~~~~~~~~~~~S~~d~l~A~lW~~i 273 (432)
.......|+|+.+.-++||..|...+ .|..|+|..++=..+
T Consensus 32 ~~~~Rlti~i~~~lh~rlK~~Aa~~g----~Smsdvvreli~~~L 72 (76)
T 1p94_A 32 GKIKRVNVNFDEEKHTRFKAACARKG----TSITDVVNQLVDNWL 72 (76)
T ss_dssp TCEEECCEEEEHHHHHHHHHHHHHHT----CCHHHHHHHHHHHHH
T ss_pred cCceeEEEEcCHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHH
Confidence 45667799999999999999998876 799999988875444
No 34
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=23.90 E-value=1.6e+02 Score=19.47 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=30.4
Q ss_pred cceEEEEEEECHHHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHc
Q 013997 229 EEMLYRYFCFGPEKLEQLKQIAMQDKVLNKCTTFEALSAFVWRARCEAL 277 (432)
Q Consensus 229 ~~~~~~~f~~~~~~i~~Lk~~~~~~~~~~~~S~~d~l~A~lW~~i~~ar 277 (432)
.+.....|+|++++-+.|.+.+.++. |.+..+|=+.|.++-
T Consensus 13 k~~~~Vs~Y~SkEey~~L~klA~eE~--------eSV~sfIKR~IlK~l 53 (66)
T 2k1o_A 13 KRNFSVTFYLSKEEHDVLRRLADEEV--------ESVNSFVKRHILKTI 53 (66)
T ss_dssp CCCEEEEEEEEHHHHHHHHHHHHTTC--------SCHHHHHHHHHHHHH
T ss_pred ccceEEEEEecHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 45567899999999999999998765 234556666666664
No 35
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=22.98 E-value=1.3e+02 Score=18.12 Aligned_cols=36 Identities=14% Similarity=0.056 Sum_probs=28.7
Q ss_pred EEEEEECHHHHHHHHHHHhhCCCCCccchHHHHHHHHHHH
Q 013997 233 YRYFCFGPEKLEQLKQIAMQDKVLNKCTTFEALSAFVWRA 272 (432)
Q Consensus 233 ~~~f~~~~~~i~~Lk~~~~~~~~~~~~S~~d~l~A~lW~~ 272 (432)
...++++.+.+++|.+.+...+ .|..+++...+-..
T Consensus 4 ritv~l~~~l~~~Ld~~a~~~g----~srS~~ir~ai~~~ 39 (45)
T 2cpg_A 4 RLTITLSESVLENLEKMAREMG----LSKSAMISVALENY 39 (45)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHT----CCHHHHHHHHHHHH
T ss_pred eEEEecCHHHHHHHHHHHHHHC----cCHHHHHHHHHHHH
Confidence 4579999999999999998765 68888887765443
No 36
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=21.57 E-value=57 Score=35.94 Aligned_cols=30 Identities=10% Similarity=0.290 Sum_probs=27.6
Q ss_pred EEEEeecceeccchhhHHHHHHHHHHHhcC
Q 013997 156 FVIGMSMNHCMLDGLAAMEFMNSWGETARG 185 (432)
Q Consensus 156 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~rg 185 (432)
+-|+++++|.+.||.-...|++.+.+.+..
T Consensus 192 m~lsls~DHRviDGa~aa~FL~~lk~~Le~ 221 (1113)
T 2xt6_A 192 ITLTSTYDHRIIQGAESGDFLRTIHQLLLD 221 (1113)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEEEECcceechHHHHHHHHHHHHHHhC
Confidence 789999999999999999999999988764
No 37
>1apy_B Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_B*
Probab=20.11 E-value=2.5e+02 Score=22.53 Aligned_cols=47 Identities=11% Similarity=0.165 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhhhhhcc-cCCeEEeecCCCeEEEEecC----CccEEEEEE
Q 013997 60 DAAEVVKNALSKLLVQCY-PLAGRLTISSAGKLIVNCTG----EGAVFVEAE 106 (432)
Q Consensus 60 ~~~~~L~~sL~~~l~~~p-~LaGrl~~~~~G~~~i~~~~----~gv~f~~a~ 106 (432)
...+..++++.++.++++ ..+|-|..+.+|++-+.||. .+..|.+..
T Consensus 76 ~~~~A~~~~i~~~~~~~~~~~ggvIa~d~~G~~~~~~n~~~~~~~F~~~v~~ 127 (141)
T 1apy_B 76 DPTIACQKVISRIQKHFPEFFGAVICANVTGSYGAACNKLSTFTQFSFMVYN 127 (141)
T ss_dssp CHHHHHHHHHHHHHHHCTTCCEEEEEEETTSCEEEEECCBTTBCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCEEEEeccCCCCCCeeEEEEc
Confidence 355677778888888887 46666777888999999986 345555553
Done!