Query 013998
Match_columns 432
No_of_seqs 15 out of 17
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 00:51:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013998.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013998hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09039 hypothetical protein; 97.5 0.022 4.7E-07 56.2 20.4 114 43-184 17-147 (343)
2 PF00038 Filament: Intermediat 97.0 0.28 6.1E-06 46.0 30.7 117 12-138 13-130 (312)
3 PHA02562 46 endonuclease subun 96.6 0.96 2.1E-05 45.4 27.9 75 15-89 172-247 (562)
4 TIGR02168 SMC_prok_B chromosom 96.4 1.6 3.4E-05 46.3 28.3 17 233-249 966-982 (1179)
5 PF10174 Cast: RIM-binding pro 95.9 0.37 8E-06 53.1 16.9 115 16-139 2-135 (775)
6 TIGR02169 SMC_prok_A chromosom 95.9 3.2 6.9E-05 44.5 34.9 30 234-263 953-983 (1164)
7 TIGR00606 rad50 rad50. This fa 95.2 7.7 0.00017 44.4 29.2 290 16-323 842-1153(1311)
8 COG1196 Smc Chromosome segrega 95.1 7.7 0.00017 43.9 32.7 70 236-306 946-1016(1163)
9 KOG0161 Myosin class II heavy 95.1 12 0.00025 45.7 30.8 182 57-239 1296-1481(1930)
10 PF10174 Cast: RIM-binding pro 94.8 8.3 0.00018 43.0 24.9 178 11-188 136-343 (775)
11 PRK02224 chromosome segregatio 94.1 10 0.00022 40.7 32.9 30 233-262 483-512 (880)
12 PF05667 DUF812: Protein of un 93.8 12 0.00025 40.6 21.2 88 239-329 447-534 (594)
13 KOG0161 Myosin class II heavy 93.6 9.2 0.0002 46.5 21.2 149 51-203 1663-1815(1930)
14 PF08614 ATG16: Autophagy prot 93.3 1.1 2.4E-05 40.6 10.7 43 80-122 78-120 (194)
15 TIGR02168 SMC_prok_B chromosom 93.0 15 0.00032 39.3 33.4 24 13-36 673-696 (1179)
16 KOG0995 Centromere-associated 92.9 17 0.00037 39.7 20.2 174 50-285 216-389 (581)
17 TIGR00606 rad50 rad50. This fa 92.6 23 0.00051 40.7 27.0 46 53-98 222-267 (1311)
18 PRK02224 chromosome segregatio 92.5 18 0.00038 39.0 30.0 36 229-267 657-692 (880)
19 PRK10884 SH3 domain-containing 92.5 2.3 5E-05 40.1 11.8 71 12-98 88-158 (206)
20 PF15070 GOLGA2L5: Putative go 92.2 13 0.00029 40.3 18.4 173 11-198 44-216 (617)
21 PF12325 TMF_TATA_bd: TATA ele 92.1 4.5 9.7E-05 35.6 12.3 100 43-168 12-111 (120)
22 PRK09039 hypothetical protein; 92.0 14 0.00031 36.8 21.0 156 15-194 44-200 (343)
23 COG1196 Smc Chromosome segrega 91.4 30 0.00066 39.4 31.2 6 352-357 1052-1057(1163)
24 PRK03918 chromosome segregatio 91.2 24 0.00052 37.7 28.8 30 133-162 606-635 (880)
25 TIGR02169 SMC_prok_A chromosom 91.0 26 0.00056 37.9 35.4 33 56-88 231-263 (1164)
26 PRK04863 mukB cell division pr 90.7 43 0.00094 40.0 25.8 45 51-98 282-326 (1486)
27 PF12718 Tropomyosin_1: Tropom 90.7 12 0.00025 33.4 15.9 125 132-283 7-131 (143)
28 PRK11637 AmiB activator; Provi 88.3 30 0.00065 34.8 21.2 35 52-86 37-71 (428)
29 PF15070 GOLGA2L5: Putative go 87.5 48 0.001 36.2 21.5 68 15-98 2-69 (617)
30 PF00261 Tropomyosin: Tropomyo 86.6 28 0.00062 32.6 16.4 54 139-192 176-229 (237)
31 PF10168 Nup88: Nuclear pore c 86.3 14 0.00031 40.6 13.5 28 294-321 683-710 (717)
32 TIGR03185 DNA_S_dndD DNA sulfu 85.1 57 0.0012 34.7 23.6 47 13-62 265-311 (650)
33 COG0419 SbcC ATPase involved i 84.9 68 0.0015 35.5 30.9 44 234-277 690-733 (908)
34 KOG0612 Rho-associated, coiled 84.7 96 0.0021 37.1 25.2 92 58-149 468-560 (1317)
35 smart00787 Spc7 Spc7 kinetocho 84.4 47 0.001 33.2 16.1 122 56-181 138-260 (312)
36 PRK03918 chromosome segregatio 84.1 65 0.0014 34.6 30.5 63 15-77 410-481 (880)
37 PF08232 Striatin: Striatin fa 83.9 2.6 5.7E-05 37.1 5.6 55 113-181 6-60 (134)
38 PF05557 MAD: Mitotic checkpoi 83.0 4.9 0.00011 43.1 8.2 122 152-289 502-635 (722)
39 PRK11637 AmiB activator; Provi 80.4 69 0.0015 32.3 22.2 117 55-178 89-216 (428)
40 PF04849 HAP1_N: HAP1 N-termin 80.1 72 0.0016 32.5 14.6 80 11-98 161-246 (306)
41 PHA02562 46 endonuclease subun 80.0 72 0.0016 32.3 23.6 24 233-256 307-330 (562)
42 PRK04778 septation ring format 79.6 88 0.0019 33.1 25.4 82 59-140 253-339 (569)
43 PF14662 CCDC155: Coiled-coil 79.2 11 0.00023 36.3 8.1 70 12-81 97-177 (193)
44 PF12718 Tropomyosin_1: Tropom 77.9 51 0.0011 29.4 14.2 37 53-89 26-62 (143)
45 PF01920 Prefoldin_2: Prefoldi 77.7 26 0.00057 27.8 8.8 30 227-256 57-86 (106)
46 PRK10884 SH3 domain-containing 76.8 43 0.00093 31.8 11.4 28 50-77 88-115 (206)
47 PF10458 Val_tRNA-synt_C: Valy 76.7 24 0.00053 27.4 8.2 58 15-72 2-63 (66)
48 PF01920 Prefoldin_2: Prefoldi 76.6 15 0.00033 29.1 7.3 74 12-85 14-99 (106)
49 PF01486 K-box: K-box region; 76.5 12 0.00027 30.7 6.9 73 15-87 10-100 (100)
50 PF09728 Taxilin: Myosin-like 76.2 87 0.0019 31.2 16.1 109 59-184 40-152 (309)
51 PF02050 FliJ: Flagellar FliJ 75.5 36 0.00077 26.4 12.3 80 14-98 16-95 (123)
52 PF06657 Cep57_MT_bd: Centroso 75.0 13 0.00028 30.5 6.5 55 227-281 12-75 (79)
53 KOG0979 Structural maintenance 74.3 1.3E+02 0.0027 35.5 15.9 142 12-177 197-342 (1072)
54 PRK04863 mukB cell division pr 74.0 2.1E+02 0.0045 34.6 18.8 74 115-188 265-342 (1486)
55 KOG2991 Splicing regulator [RN 74.0 1.1E+02 0.0023 31.6 13.8 180 14-270 67-252 (330)
56 cd00632 Prefoldin_beta Prefold 73.3 52 0.0011 27.3 11.2 56 63-130 7-62 (105)
57 PF12240 Angiomotin_C: Angiomo 73.2 85 0.0018 30.6 12.5 47 119-165 100-155 (205)
58 PF08172 CASP_C: CASP C termin 73.1 42 0.00092 32.7 10.5 42 143-184 83-124 (248)
59 PF08317 Spc7: Spc7 kinetochor 72.1 1.1E+02 0.0023 30.3 15.4 97 56-162 143-239 (325)
60 PF05911 DUF869: Plant protein 71.1 1.7E+02 0.0037 33.1 15.8 59 120-181 111-169 (769)
61 KOG4643 Uncharacterized coiled 70.0 44 0.00094 39.2 11.2 105 73-184 213-325 (1195)
62 PF09730 BicD: Microtubule-ass 69.4 1.7E+02 0.0038 32.9 15.4 38 53-90 32-69 (717)
63 PF07888 CALCOCO1: Calcium bin 68.0 1.9E+02 0.0042 31.7 22.0 158 13-191 139-300 (546)
64 TIGR02680 conserved hypothetic 66.9 2.7E+02 0.0059 33.0 19.0 113 42-162 256-384 (1353)
65 PF05700 BCAS2: Breast carcino 66.3 97 0.0021 29.1 11.1 90 15-110 106-195 (221)
66 PF05911 DUF869: Plant protein 65.8 2.2E+02 0.0048 32.3 15.4 60 125-184 603-662 (769)
67 PF06160 EzrA: Septation ring 65.7 1.9E+02 0.0041 30.8 21.2 182 78-286 39-242 (560)
68 PF04977 DivIC: Septum formati 64.1 15 0.00033 27.8 4.5 43 53-95 15-57 (80)
69 PF15035 Rootletin: Ciliary ro 64.0 1.2E+02 0.0026 28.4 11.1 85 11-98 17-114 (182)
70 PF06248 Zw10: Centromere/kine 64.0 2E+02 0.0043 30.4 15.6 52 12-64 9-62 (593)
71 COG0419 SbcC ATPase involved i 63.1 2.5E+02 0.0054 31.3 30.7 38 60-97 272-309 (908)
72 PF04822 Takusan: Takusan; In 63.1 22 0.00047 30.0 5.6 64 10-88 19-82 (84)
73 COG2825 HlpA Outer membrane pr 63.0 1.3E+02 0.0027 27.8 13.1 47 146-201 97-143 (170)
74 PF13514 AAA_27: AAA domain 61.4 3E+02 0.0064 31.5 20.4 28 12-39 745-772 (1111)
75 PF04111 APG6: Autophagy prote 61.3 1.3E+02 0.0028 30.0 11.4 47 133-179 86-132 (314)
76 cd00632 Prefoldin_beta Prefold 61.3 87 0.0019 26.0 8.8 76 12-87 15-102 (105)
77 KOG0804 Cytoplasmic Zn-finger 61.2 2.5E+02 0.0054 30.6 14.3 45 50-94 334-379 (493)
78 PF11802 CENP-K: Centromere-as 60.3 1.9E+02 0.0041 29.3 12.4 191 14-221 56-257 (268)
79 KOG4673 Transcription factor T 58.7 3.4E+02 0.0074 31.4 16.3 69 115-183 369-439 (961)
80 KOG0804 Cytoplasmic Zn-finger 57.6 1.4E+02 0.0031 32.4 11.6 72 108-184 348-420 (493)
81 PF12128 DUF3584: Protein of u 57.6 3.6E+02 0.0078 31.3 32.6 64 101-164 785-848 (1201)
82 PF00038 Filament: Intermediat 57.3 1.8E+02 0.0038 27.6 29.3 74 111-184 61-134 (312)
83 PF10473 CENP-F_leu_zip: Leuci 57.1 1.6E+02 0.0034 27.0 14.6 28 62-89 52-79 (140)
84 PF10186 Atg14: UV radiation r 56.2 1.6E+02 0.0036 27.0 17.6 72 13-86 23-94 (302)
85 PRK11281 hypothetical protein; 55.6 4.1E+02 0.0089 31.4 20.5 162 14-185 125-331 (1113)
86 PRK10929 putative mechanosensi 55.3 4.2E+02 0.0091 31.4 24.8 57 12-76 67-123 (1109)
87 COG1579 Zn-ribbon protein, pos 55.2 2.2E+02 0.0048 28.1 16.5 60 131-190 95-154 (239)
88 PF07139 DUF1387: Protein of u 53.8 2.7E+02 0.0058 28.7 13.8 114 54-203 149-265 (302)
89 KOG0250 DNA repair protein RAD 53.5 4.6E+02 0.0099 31.3 25.8 149 101-279 306-455 (1074)
90 PF11629 Mst1_SARAH: C termina 52.1 52 0.0011 25.9 5.6 39 268-306 9-47 (49)
91 TIGR02231 conserved hypothetic 51.3 1.8E+02 0.0039 30.1 11.0 29 52-80 68-96 (525)
92 PF13851 GAS: Growth-arrest sp 49.9 2.2E+02 0.0049 26.6 12.7 96 12-115 57-154 (201)
93 PF02403 Seryl_tRNA_N: Seryl-t 49.8 1.3E+02 0.0028 24.6 8.0 25 13-37 39-63 (108)
94 PRK15178 Vi polysaccharide exp 49.0 2.3E+02 0.0049 30.2 11.4 105 11-137 280-384 (434)
95 PF03962 Mnd1: Mnd1 family; I 48.6 2.3E+02 0.005 26.4 10.8 73 10-87 69-142 (188)
96 KOG0977 Nuclear envelope prote 48.6 4.1E+02 0.0089 29.3 24.2 237 11-307 107-364 (546)
97 TIGR02338 gimC_beta prefoldin, 48.1 1.7E+02 0.0036 24.6 10.6 57 62-130 10-66 (110)
98 PF05064 Nsp1_C: Nsp1-like C-t 47.8 63 0.0014 27.8 6.1 29 106-135 28-56 (116)
99 PF09726 Macoilin: Transmembra 47.8 4.5E+02 0.0096 29.5 17.6 89 152-273 544-632 (697)
100 PF10186 Atg14: UV radiation r 47.3 2.3E+02 0.005 26.0 15.0 39 146-184 63-101 (302)
101 COG2433 Uncharacterized conser 47.3 3E+02 0.0065 31.0 12.3 92 57-180 417-508 (652)
102 KOG2129 Uncharacterized conser 47.3 2.4E+02 0.0053 30.8 11.4 17 55-71 208-224 (552)
103 PF01576 Myosin_tail_1: Myosin 46.9 6.4 0.00014 43.7 0.0 244 16-276 207-470 (859)
104 PF06008 Laminin_I: Laminin Do 46.5 2.6E+02 0.0057 26.5 20.4 226 55-315 17-253 (264)
105 PLN02939 transferase, transfer 46.1 5.6E+02 0.012 30.2 16.6 29 129-157 153-181 (977)
106 PF07083 DUF1351: Protein of u 44.8 2.8E+02 0.006 26.2 12.0 109 136-254 61-170 (215)
107 PF05622 HOOK: HOOK protein; 44.7 7.3 0.00016 41.8 0.0 121 65-186 270-403 (713)
108 TIGR02338 gimC_beta prefoldin, 44.6 1.9E+02 0.0041 24.3 9.5 78 12-89 19-108 (110)
109 PF14193 DUF4315: Domain of un 44.1 54 0.0012 27.6 5.0 38 234-278 3-40 (83)
110 PF13851 GAS: Growth-arrest sp 43.3 2.9E+02 0.0062 26.0 16.7 124 45-200 17-141 (201)
111 PF04156 IncA: IncA protein; 42.9 2.4E+02 0.0052 25.0 15.4 13 172-184 170-182 (191)
112 PF01025 GrpE: GrpE; InterPro 42.3 45 0.00098 28.9 4.5 128 234-371 13-149 (165)
113 PF06810 Phage_GP20: Phage min 42.0 75 0.0016 28.8 5.9 66 125-194 37-106 (155)
114 PF07200 Mod_r: Modifier of ru 41.9 2.3E+02 0.005 24.5 10.6 39 57-98 29-67 (150)
115 KOG0964 Structural maintenance 41.6 7E+02 0.015 30.0 23.1 32 155-186 399-430 (1200)
116 PRK09343 prefoldin subunit bet 41.5 2.4E+02 0.0051 24.5 10.4 94 64-184 16-109 (121)
117 PF08397 IMD: IRSp53/MIM homol 41.5 2.3E+02 0.0049 26.3 9.1 76 247-322 124-211 (219)
118 PF08826 DMPK_coil: DMPK coile 41.4 1.2E+02 0.0025 24.4 6.2 20 233-252 40-59 (61)
119 PF09304 Cortex-I_coil: Cortex 41.4 2.6E+02 0.0057 25.0 10.6 22 53-74 14-35 (107)
120 PF15397 DUF4618: Domain of un 41.1 3.9E+02 0.0083 26.8 17.8 40 59-98 78-125 (258)
121 PF01017 STAT_alpha: STAT prot 40.5 2.4E+02 0.0052 25.8 9.0 95 55-162 2-98 (182)
122 KOG1850 Myosin-like coiled-coi 40.4 4.8E+02 0.01 27.7 14.8 121 64-198 48-168 (391)
123 PF10474 DUF2451: Protein of u 40.3 3E+02 0.0066 26.4 10.0 78 217-300 75-154 (234)
124 PF07106 TBPIP: Tat binding pr 40.0 2.7E+02 0.0058 24.7 10.5 77 11-89 73-151 (169)
125 PF09755 DUF2046: Uncharacteri 40.0 4.4E+02 0.0096 27.2 20.9 24 230-253 227-250 (310)
126 PF05308 Mito_fiss_reg: Mitoch 39.8 27 0.00058 34.2 3.0 23 229-251 119-141 (253)
127 smart00502 BBC B-Box C-termina 39.6 1.9E+02 0.0041 22.8 10.5 33 227-259 74-106 (127)
128 COG1579 Zn-ribbon protein, pos 39.3 3.9E+02 0.0085 26.4 17.5 131 227-374 84-226 (239)
129 PF12325 TMF_TATA_bd: TATA ele 39.0 2.8E+02 0.006 24.6 12.5 96 62-182 16-111 (120)
130 PF02996 Prefoldin: Prefoldin 38.8 90 0.002 25.5 5.5 79 11-89 4-118 (120)
131 KOG0642 Cell-cycle nuclear pro 38.7 23 0.0005 38.8 2.5 43 126-180 33-75 (577)
132 PF00170 bZIP_1: bZIP transcri 38.7 1.2E+02 0.0027 23.0 5.9 37 146-182 26-62 (64)
133 PF05529 Bap31: B-cell recepto 38.6 2.2E+02 0.0047 25.7 8.3 38 139-176 154-191 (192)
134 PF09832 DUF2059: Uncharacteri 38.5 84 0.0018 23.6 4.9 42 91-133 5-46 (64)
135 PF05529 Bap31: B-cell recepto 37.7 2E+02 0.0043 26.0 8.0 65 16-82 117-181 (192)
136 PF07047 OPA3: Optic atrophy 3 37.6 66 0.0014 28.3 4.8 34 134-167 100-133 (134)
137 KOG4657 Uncharacterized conser 37.4 1.1E+02 0.0023 30.8 6.6 76 17-98 51-126 (246)
138 PF07926 TPR_MLP1_2: TPR/MLP1/ 37.4 2.8E+02 0.006 24.1 15.4 76 98-176 53-128 (132)
139 PF09730 BicD: Microtubule-ass 37.3 2E+02 0.0042 32.6 9.3 22 146-167 300-321 (717)
140 PF04065 Not3: Not1 N-terminal 37.2 1.6E+02 0.0034 28.9 7.7 82 230-325 127-208 (233)
141 PF14131 DUF4298: Domain of un 36.2 1.2E+02 0.0025 25.3 5.8 16 204-219 55-70 (90)
142 PRK00409 recombination and DNA 35.7 6.8E+02 0.015 28.1 14.4 62 37-98 493-556 (782)
143 PF03980 Nnf1: Nnf1 ; InterPr 35.5 75 0.0016 26.4 4.6 47 41-87 59-105 (109)
144 TIGR02209 ftsL_broad cell divi 35.3 1.1E+02 0.0023 24.0 5.2 30 58-87 27-56 (85)
145 PF02388 FemAB: FemAB family; 35.2 1.6E+02 0.0034 29.9 7.6 50 230-283 240-289 (406)
146 KOG0996 Structural maintenance 35.2 9.2E+02 0.02 29.5 21.0 119 64-182 860-1006(1293)
147 PF04999 FtsL: Cell division p 35.1 1E+02 0.0022 24.9 5.2 42 46-87 26-67 (97)
148 PF09789 DUF2353: Uncharacteri 34.8 5.3E+02 0.011 26.6 13.3 144 11-196 80-225 (319)
149 TIGR01005 eps_transp_fam exopo 34.4 6.3E+02 0.014 27.3 18.1 48 133-184 346-393 (754)
150 PF13094 CENP-Q: CENP-Q, a CEN 34.2 1.8E+02 0.004 25.6 7.1 33 224-256 19-51 (160)
151 PF08172 CASP_C: CASP C termin 34.2 4.6E+02 0.01 25.7 10.6 33 149-181 2-34 (248)
152 PF06156 DUF972: Protein of un 34.1 80 0.0017 27.4 4.7 38 54-91 14-51 (107)
153 PF12128 DUF3584: Protein of u 34.0 8.2E+02 0.018 28.6 30.8 85 236-323 604-694 (1201)
154 PF12761 End3: Actin cytoskele 34.0 3.5E+02 0.0075 26.3 9.3 108 121-274 85-192 (195)
155 KOG0963 Transcription factor/C 33.9 7.4E+02 0.016 28.0 21.4 227 43-323 104-330 (629)
156 PF07321 YscO: Type III secret 33.8 2.8E+02 0.0061 25.5 8.3 49 50-98 76-124 (152)
157 KOG0976 Rho/Rac1-interacting s 32.9 9.2E+02 0.02 28.8 15.8 143 12-186 346-495 (1265)
158 KOG0996 Structural maintenance 32.5 1E+03 0.022 29.1 23.9 155 152-323 857-1021(1293)
159 PF09726 Macoilin: Transmembra 32.4 4.5E+02 0.0097 29.4 11.0 96 10-111 538-636 (697)
160 PF03962 Mnd1: Mnd1 family; I 32.1 4.2E+02 0.0092 24.7 12.5 77 54-132 61-137 (188)
161 PF14389 Lzipper-MIP1: Leucine 31.9 1.5E+02 0.0033 24.6 5.8 23 233-255 62-84 (88)
162 PF05622 HOOK: HOOK protein; 31.7 16 0.00034 39.4 0.0 104 15-118 403-523 (713)
163 PF09403 FadA: Adhesion protei 31.6 3.9E+02 0.0084 24.1 12.2 63 55-123 27-94 (126)
164 PF02183 HALZ: Homeobox associ 31.4 1.1E+02 0.0024 23.0 4.5 37 59-98 2-38 (45)
165 PF00015 MCPsignal: Methyl-acc 31.3 3.4E+02 0.0075 23.4 13.5 47 25-71 41-105 (213)
166 PRK14147 heat shock protein Gr 31.1 4.4E+02 0.0095 24.5 9.8 45 234-278 20-65 (172)
167 KOG0977 Nuclear envelope prote 31.0 7.7E+02 0.017 27.3 15.4 137 12-182 51-191 (546)
168 PF07798 DUF1640: Protein of u 30.9 4.1E+02 0.0088 24.1 9.9 72 234-305 75-158 (177)
169 PF11365 DUF3166: Protein of u 30.9 67 0.0014 27.9 3.6 33 60-93 13-45 (96)
170 cd00890 Prefoldin Prefoldin is 30.8 3E+02 0.0065 22.5 7.6 42 48-89 87-128 (129)
171 PF12808 Mto2_bdg: Micro-tubul 30.4 73 0.0016 25.1 3.5 28 227-254 24-51 (52)
172 PRK05431 seryl-tRNA synthetase 30.1 2.2E+02 0.0047 29.4 7.8 22 14-35 39-60 (425)
173 PRK14160 heat shock protein Gr 30.0 5.2E+02 0.011 25.1 10.2 45 231-275 60-105 (211)
174 TIGR03007 pepcterm_ChnLen poly 30.0 6E+02 0.013 25.8 19.2 61 12-74 163-223 (498)
175 KOG0999 Microtubule-associated 29.9 8.8E+02 0.019 27.7 20.6 209 57-292 10-240 (772)
176 PF12711 Kinesin-relat_1: Kine 29.9 79 0.0017 27.0 3.9 43 42-85 12-60 (86)
177 PLN02939 transferase, transfer 29.8 1E+03 0.022 28.3 19.3 184 17-203 150-387 (977)
178 KOG0483 Transcription factor H 29.7 64 0.0014 30.8 3.7 32 56-87 106-137 (198)
179 PF07352 Phage_Mu_Gam: Bacteri 29.5 3.6E+02 0.0079 23.7 8.1 60 142-201 6-66 (149)
180 smart00338 BRLZ basic region l 29.2 2.4E+02 0.0051 21.5 6.1 38 146-183 26-63 (65)
181 PF05667 DUF812: Protein of un 28.9 8.2E+02 0.018 27.0 18.5 39 206-255 379-417 (594)
182 PF05266 DUF724: Protein of un 28.7 5E+02 0.011 24.5 10.7 69 112-180 87-165 (190)
183 PF01813 ATP-synt_D: ATP synth 28.5 2.8E+02 0.0061 25.3 7.4 37 123-164 11-47 (196)
184 PRK00373 V-type ATP synthase s 28.4 4.5E+02 0.0097 24.4 8.8 36 124-164 22-57 (204)
185 KOG3215 Uncharacterized conser 27.8 6.2E+02 0.014 25.3 12.3 93 59-166 30-123 (222)
186 COG3074 Uncharacterized protei 27.8 2.7E+02 0.0059 23.8 6.6 35 132-166 25-59 (79)
187 PRK10636 putative ABC transpor 27.3 2.5E+02 0.0054 30.1 7.8 68 18-88 564-631 (638)
188 KOG0946 ER-Golgi vesicle-tethe 27.1 1.1E+03 0.024 27.9 15.4 37 59-95 668-704 (970)
189 PRK13694 hypothetical protein; 27.0 2.3E+02 0.0049 24.5 6.1 35 11-45 13-47 (83)
190 PRK14143 heat shock protein Gr 27.0 2.9E+02 0.0063 27.1 7.6 46 230-275 65-111 (238)
191 PF15233 SYCE1: Synaptonemal c 26.7 3.8E+02 0.0081 25.0 7.8 105 140-244 7-131 (134)
192 KOG0976 Rho/Rac1-interacting s 26.6 5.9E+02 0.013 30.3 10.8 71 75-166 329-399 (1265)
193 TIGR00309 V_ATPase_subD H(+)-t 26.4 5.4E+02 0.012 24.0 12.9 35 124-163 20-54 (209)
194 PF12341 DUF3639: Protein of u 26.4 6 0.00013 27.4 -2.7 16 41-56 9-24 (27)
195 PF06698 DUF1192: Protein of u 26.4 56 0.0012 26.2 2.3 37 214-252 12-48 (59)
196 PF13863 DUF4200: Domain of un 25.9 3.9E+02 0.0083 22.2 13.4 74 89-162 24-97 (126)
197 PF10211 Ax_dynein_light: Axon 25.9 4.2E+02 0.0092 24.6 8.2 60 232-301 127-186 (189)
198 TIGR00414 serS seryl-tRNA synt 25.8 3.4E+02 0.0075 28.0 8.3 22 14-35 41-62 (418)
199 COG2900 SlyX Uncharacterized p 25.8 3.3E+02 0.0072 23.0 6.7 49 150-201 5-60 (72)
200 PF09397 Ftsk_gamma: Ftsk gamm 25.7 47 0.001 26.7 1.7 27 233-259 8-34 (65)
201 KOG3958 Putative dynamitin [Cy 25.5 4.4E+02 0.0095 27.8 8.9 41 11-51 88-133 (371)
202 PF07926 TPR_MLP1_2: TPR/MLP1/ 25.1 4.5E+02 0.0098 22.7 8.0 73 12-85 54-128 (132)
203 PF14552 Tautomerase_2: Tautom 25.0 60 0.0013 26.7 2.3 36 191-226 46-82 (82)
204 smart00843 Ftsk_gamma This dom 25.0 68 0.0015 25.9 2.5 28 232-259 6-33 (63)
205 PLN02678 seryl-tRNA synthetase 24.7 3.1E+02 0.0067 29.0 7.9 21 15-35 45-65 (448)
206 TIGR02473 flagell_FliJ flagell 24.6 4.1E+02 0.0088 22.0 12.5 79 15-98 32-111 (141)
207 PF09789 DUF2353: Uncharacteri 24.6 7.9E+02 0.017 25.4 22.0 35 385-429 283-317 (319)
208 KOG1853 LIS1-interacting prote 24.3 8.2E+02 0.018 25.5 15.8 52 233-298 92-143 (333)
209 cd00890 Prefoldin Prefoldin is 24.3 4E+02 0.0087 21.8 7.6 39 60-98 4-42 (129)
210 PF08077 Cm_res_leader: Chlora 24.3 12 0.00025 23.9 -1.5 11 41-51 2-13 (17)
211 COG3707 AmiR Response regulato 24.2 1.3E+02 0.0028 29.1 4.7 42 53-96 123-173 (194)
212 PF05823 Gp-FAR-1: Nematode fa 24.1 3.3E+02 0.0072 24.6 7.0 104 204-323 19-129 (154)
213 KOG3564 GTPase-activating prot 23.8 1.7E+02 0.0037 32.3 5.9 72 218-289 39-113 (604)
214 KOG3091 Nuclear pore complex, 23.6 9.9E+02 0.021 26.5 11.4 73 15-106 374-448 (508)
215 PRK01156 chromosome segregatio 23.3 1E+03 0.022 26.2 26.6 24 232-255 469-492 (895)
216 TIGR02231 conserved hypothetic 23.2 5.2E+02 0.011 26.9 9.1 26 11-36 72-97 (525)
217 PF07106 TBPIP: Tat binding pr 23.1 5.3E+02 0.012 22.8 8.8 63 57-119 74-138 (169)
218 smart00340 HALZ homeobox assoc 23.0 1.2E+02 0.0027 23.5 3.4 33 61-93 4-36 (44)
219 PRK14145 heat shock protein Gr 22.8 4.6E+02 0.01 25.2 7.9 51 227-277 40-91 (196)
220 KOG0612 Rho-associated, coiled 22.8 1.5E+03 0.032 27.9 29.1 241 15-273 470-755 (1317)
221 PF08317 Spc7: Spc7 kinetochor 22.3 7.7E+02 0.017 24.4 13.2 35 145-179 229-263 (325)
222 PF09311 Rab5-bind: Rabaptin-l 22.3 47 0.001 30.3 1.3 43 47-89 7-49 (181)
223 PF09787 Golgin_A5: Golgin sub 22.1 9.5E+02 0.021 25.4 20.6 223 42-282 174-411 (511)
224 KOG4643 Uncharacterized coiled 22.1 1.5E+03 0.032 27.6 27.6 93 10-117 357-456 (1195)
225 PF10473 CENP-F_leu_zip: Leuci 21.9 6.2E+02 0.013 23.2 16.5 30 56-85 25-54 (140)
226 PF04782 DUF632: Protein of un 21.7 4.6E+02 0.01 26.6 8.1 34 240-273 130-163 (312)
227 KOG1760 Molecular chaperone Pr 21.7 6.6E+02 0.014 23.4 10.8 30 228-257 77-106 (131)
228 KOG4117 Heat shock factor bind 21.6 1.2E+02 0.0026 25.5 3.4 28 14-42 38-65 (73)
229 COG5185 HEC1 Protein involved 21.5 1.2E+03 0.026 26.2 12.8 54 65-122 267-320 (622)
230 PF11500 Cut12: Spindle pole b 21.4 6.8E+02 0.015 23.4 8.7 62 99-164 71-137 (152)
231 PRK15041 methyl-accepting chem 21.3 9.5E+02 0.021 25.1 16.4 31 40-70 391-423 (554)
232 PF06785 UPF0242: Uncharacteri 21.1 9.3E+02 0.02 25.8 10.3 51 53-103 139-189 (401)
233 PRK14146 heat shock protein Gr 21.1 4.1E+02 0.0088 25.7 7.3 45 234-278 56-101 (215)
234 PF12709 Kinetocho_Slk19: Cent 21.1 2.7E+02 0.0058 24.1 5.4 40 150-189 46-85 (87)
235 PF15619 Lebercilin: Ciliary p 21.0 7.1E+02 0.015 23.5 19.4 124 14-162 16-148 (194)
236 KOG0971 Microtubule-associated 20.7 1.5E+03 0.033 27.3 19.2 173 10-188 332-553 (1243)
237 PF05308 Mito_fiss_reg: Mitoch 20.7 91 0.002 30.7 3.0 22 54-75 121-142 (253)
238 PF05557 MAD: Mitotic checkpoi 20.6 7.7E+02 0.017 26.9 10.0 25 14-38 507-531 (722)
239 PF01166 TSC22: TSC-22/dip/bun 20.5 1E+02 0.0022 25.1 2.7 32 236-268 11-42 (59)
240 PF08826 DMPK_coil: DMPK coile 20.5 4.6E+02 0.0099 21.1 6.3 17 168-184 40-56 (61)
241 PF14197 Cep57_CLD_2: Centroso 20.5 4.7E+02 0.01 21.2 7.9 32 59-90 2-33 (69)
242 PF12001 DUF3496: Domain of un 20.3 6.3E+02 0.014 22.6 8.1 32 141-172 45-76 (111)
243 PF04012 PspA_IM30: PspA/IM30 20.3 6.7E+02 0.014 22.9 15.3 27 97-123 84-110 (221)
244 PF11559 ADIP: Afadin- and alp 20.1 5.8E+02 0.013 22.1 11.2 100 7-140 49-148 (151)
No 1
>PRK09039 hypothetical protein; Validated
Probab=97.49 E-value=0.022 Score=56.23 Aligned_cols=114 Identities=21% Similarity=0.230 Sum_probs=64.8
Q ss_pred CchHHHhhHH-----------------HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 013998 43 PSYLAVATRM-----------------HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIK 105 (432)
Q Consensus 43 pgyl~vATRM-----------------~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~K 105 (432)
||||++-|-+ +++-..++++++..|..+++. |+++-+-+.+.
T Consensus 17 pg~vd~~~~ll~~~~f~l~~f~~~q~fLs~~i~~~~~eL~~L~~qIa~---------------------L~e~L~le~~~ 75 (343)
T PRK09039 17 PGFVDALSTLLLVIMFLLTVFVVAQFFLSREISGKDSALDRLNSQIAE---------------------LADLLSLERQG 75 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence 9999877654 456777777777777777655 55555555555
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhH
Q 013998 106 NMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (432)
Q Consensus 106 N~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e 184 (432)
+..++..+.=.+.....|-++|+. .| ..-. .......+.+.|+..++..+..+|......+.+...+..|.+
T Consensus 76 ~~~l~~~l~~l~~~l~~a~~~r~~--Le--~~~~---~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~ 147 (343)
T PRK09039 76 NQDLQDSVANLRASLSAAEAERSR--LQ--ALLA---ELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIA 147 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH--HH--HHHh---hhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555555555555555544444431 11 1000 001122355566666666666666666656666666665555
No 2
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.05 E-value=0.28 Score=45.97 Aligned_cols=117 Identities=17% Similarity=0.238 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 013998 12 SEALMARIQQLEHERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (432)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaG-pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR 90 (432)
-++.+.||..||.+...|..+|..+---.+. |+-+ -...+.+|..|+.++..++.++-.|+-++..+..
T Consensus 13 la~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~----------~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 13 LASYIEKVRFLEQENKRLESEIEELREKKGEEVSRI----------KEMYEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------HHH----------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCccc----------ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 4677889999999999999999999876422 2211 2456888999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhH
Q 013998 91 IKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAK 138 (432)
Q Consensus 91 iK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaK 138 (432)
--..+-.-|..+......+|.++.=+..-+-.+.+.|...=-+++-.+
T Consensus 83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~ 130 (312)
T PF00038_consen 83 ELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLK 130 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHH
Confidence 777776778888999999999998888888777777766555555554
No 3
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.58 E-value=0.96 Score=45.35 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 013998 15 LMARIQQLEHERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (432)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCMQQaG-pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY 89 (432)
+..++.+++.+-+.|+..|+.+=-+-++ +.++.....-....++.++.+++.+..+....-.+-.+|++++.+.+
T Consensus 172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666666444443 45555555555667777887788887777777777777777777664
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.45 E-value=1.6 Score=46.33 Aligned_cols=17 Identities=6% Similarity=0.126 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHhhHH
Q 013998 233 YISALEDELEKTRSSVE 249 (432)
Q Consensus 233 yisaLEee~e~lr~si~ 249 (432)
.|..|+.+++.+.+.|+
T Consensus 966 ~~~~l~~~i~~lg~aie 982 (1179)
T TIGR02168 966 DEEEARRRLKRLENKIK 982 (1179)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 5
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.91 E-value=0.37 Score=53.14 Aligned_cols=115 Identities=27% Similarity=0.400 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHH---HhhhhhHH----HHHHHHHHH-------HHhhhhhcch
Q 013998 16 MARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHF---QRTAGLEQ----EIEILKQKI-------AACARENSNL 81 (432)
Q Consensus 16 ~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~---QRtA~LEQ----eIE~Lkkkl-------~~c~rEn~nL 81 (432)
.+++..++.|.|-|++++|.. +.-.|+.--++-| .|+ -|..++.. ++..++.++ ...-.+-++|
T Consensus 2 q~ql~~~q~E~e~L~~ele~~-~~~l~~~~~~i~~-fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~L 79 (775)
T PF10174_consen 2 QAQLERLQRENERLRRELERK-QSKLGSSMNSIKT-FWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQAL 79 (775)
T ss_pred ccHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhHhc-ccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHH
Confidence 468889999999999999987 4444444444333 222 22233322 233444444 4444455677
Q ss_pred HHHHHHH----HHHHHHHHHHHH-HHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHH
Q 013998 82 QEELSEA----YRIKGQLADLHA-AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKE 139 (432)
Q Consensus 82 QEELsEA----YRiK~qLadLh~-ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE 139 (432)
|+|| .+ ||+..++-.-.+ .+-... +++ -+|-+.+..||||....|.+....
T Consensus 80 qeEL-r~q~e~~rL~~~~e~~~~e~e~l~~--ld~----~~~q~~rl~~E~er~~~El~~lr~ 135 (775)
T PF10174_consen 80 QEEL-RAQRELNRLQQELEKAQYEFESLQE--LDK----AQEQFERLQAERERLQRELERLRK 135 (775)
T ss_pred HHHH-HHhhHHHHHHHHhhhcccccchhhh--hhh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888 55 555555443311 111111 222 367788889999999999888773
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.88 E-value=3.2 Score=44.53 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhHHHHhh-hhhhhHHHHH
Q 013998 234 ISALEDELEKTRSSVENLQS-KLRMGLEIEN 263 (432)
Q Consensus 234 isaLEee~e~lr~si~~LQs-kLR~glEIEn 263 (432)
+..++.++..+++.++++-+ |+..--+++.
T Consensus 953 ~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~ 983 (1164)
T TIGR02169 953 LEDVQAELQRVEEEIRALEPVNMLAIQEYEE 983 (1164)
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 45788888888888887765 4443344443
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.20 E-value=7.7 Score=44.43 Aligned_cols=290 Identities=12% Similarity=0.080 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH--
Q 013998 16 MARIQQLEHERDELRKDIEQL---CMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR-- 90 (432)
Q Consensus 16 ~aRI~qLEhERDELrKDIEqL---CMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR-- 90 (432)
.+.+..+..+++.+.+.|..| .+.- |.-=+.++.++- +-..|+-+|+.|+..+..+..+-..+.+++...-.
T Consensus 842 ~~~~e~l~~e~e~~~~eI~~Lq~ki~el-~~~klkl~~~l~--~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~ 918 (1311)
T TIGR00606 842 VSKIELNRKLIQDQQEQIQHLKSKTNEL-KSEKLQIGTNLQ--RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFL 918 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 333444455555556666666 5542 222233333222 44556666666666666665555555555443322
Q ss_pred --HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHH---------HHHhhhhhh--hHHHHH----hHHHHHHHHHHHHHHHH
Q 013998 91 --IKGQLADLHAAEVIKNMEAEKQVKFFQGCMA---------AAFAERDNS--VMEAEK----AKEKEELMSQKFNEFQT 153 (432)
Q Consensus 91 --iK~qLadLh~ae~~KN~e~EkqVkFfQs~VA---------~AFAERD~s--lmEaEK----aKE~Ee~m~qk~~e~e~ 153 (432)
..+.+.++....-.+..++...+.=|+..+- ..|..+|.. |-+++. ....-+.+-+....+..
T Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~ 998 (1311)
T TIGR00606 919 EKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINE 998 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333333344445555554444432 223333321 111111 11111233344455555
Q ss_pred HHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhhh
Q 013998 154 RLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKY 233 (432)
Q Consensus 154 R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStsky 233 (432)
.+..+...+.++......++..+..+..+++.. . -.....+++.....- +. .-+-.+ ...|.=--.+.+.=
T Consensus 999 ~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~-e-----l~~eI~~l~~~~~~~-~~-~~~~~e-~~~l~~~~~~l~~~ 1069 (1311)
T TIGR00606 999 DMRLMRQDIDTQKIQERWLQDNLTLRKRENELK-E-----VEEELKQHLKEMGQM-QV-LQMKQE-HQKLEENIDLIKRN 1069 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHhhc-cH-HHHHHH-HHHHHHHHHHHHHH
Confidence 555555555555555555555555553222210 0 001111111100000 00 000000 00011001112222
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhh
Q 013998 234 ISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIK 313 (432)
Q Consensus 234 isaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i~Ngis~L~~~h~~~R~~Im~lL~e~~s~ik 313 (432)
.+++.+++..+.+.|..|+..|.= =--+++..=-++..+==+....++.+|.+||...=.-||+.=..-=-.|-
T Consensus 1070 ~a~l~g~~k~le~qi~~l~~eL~e------~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~n 1143 (1311)
T TIGR00606 1070 HVLALGRQKGYEKEIKHFKKELRE------PQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEEIN 1143 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554421 11233333333444444556778888888888877777776555555566
Q ss_pred hhHHHHHhhh
Q 013998 314 SISDVIEEKT 323 (432)
Q Consensus 314 s~~~~i~ek~ 323 (432)
.||+.+=.++
T Consensus 1144 ~~~~~~w~~~ 1153 (1311)
T TIGR00606 1144 KIIRDLWRST 1153 (1311)
T ss_pred HHHHHHHHHH
Confidence 6666665555
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.11 E-value=7.7 Score=43.93 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhHHHHhh-hhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013998 236 ALEDELEKTRSSVENLQS-KLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLE 306 (432)
Q Consensus 236 aLEee~e~lr~si~~LQs-kLR~glEIEnHLkk~~r~lEkkq~~~d~~i~Ngis~L~~~h~~~R~~Im~lL~ 306 (432)
.++.+++.+...+..|-. |++ .+|-=..++++...|..+..-.++=...=...+..+...-|...|....
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~~-Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~ 1016 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNLR-AIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFD 1016 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444422 222 2333334555555555554444444333333333444444444444333
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.05 E-value=12 Score=45.73 Aligned_cols=182 Identities=22% Similarity=0.261 Sum_probs=113.4
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHH-HH
Q 013998 57 TAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVME-AE 135 (432)
Q Consensus 57 tA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmE-aE 135 (432)
-.+|+.+|+.++.++..-+|.+++|...+..+-+=+..|-+.+--+...-.++++++.=--+-++++-+.=+..+.. .|
T Consensus 1296 ~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~e 1375 (1930)
T KOG0161|consen 1296 KQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLE 1375 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677889999999999999999999998888777777776666666666677777665555555554444444443 34
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchh---
Q 013998 136 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKC--- 212 (432)
Q Consensus 136 KaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc--- 212 (432)
.+.|.-...-..+.+.+++++.+...+..+.+....||.++..+.--.+....++. |.+..+...+-.=..|..+|
T Consensus 1376 elee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~-~le~k~k~f~k~l~e~k~~~e~l 1454 (1930)
T KOG0161|consen 1376 ELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVA-ALEKKQKRFEKLLAEWKKKLEKL 1454 (1930)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455567888899999999999998888877777776655443332221111 22222222222113444444
Q ss_pred hhhcccccccccccCcchhhhHHHHHH
Q 013998 213 ACLLLDSAEMWSFNDTSTSKYISALED 239 (432)
Q Consensus 213 ~~Ll~ds~~~WSfn~tStskyisaLEe 239 (432)
+..++.....|.=-+|+.-++--+||+
T Consensus 1455 ~~Eld~aq~e~r~~~tel~kl~~~lee 1481 (1930)
T KOG0161|consen 1455 QAELDAAQRELRQLSTELQKLKNALEE 1481 (1930)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455566666666556655555444444
No 10
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.84 E-value=8.3 Score=42.99 Aligned_cols=178 Identities=21% Similarity=0.262 Sum_probs=110.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCc-hHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 013998 11 ESEALMARIQQLEHERDELRKDIEQLCM--QQAGPS-YLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (432)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCM--QQaGpg-yl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsE 87 (432)
..+.+..||.-++.++|...-.|+.|=- |..||+ +-...+.-...|.++++..+..|+..+.---.++.-+.++|-.
T Consensus 136 ~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~ 215 (775)
T PF10174_consen 136 TLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHR 215 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 4677888899999999999999988754 778844 5566666677799999999988888887777777666666665
Q ss_pred HHHHHHH------HHHHHH------HHHHhhH-HHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHH---------
Q 013998 88 AYRIKGQ------LADLHA------AEVIKNM-EAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMS--------- 145 (432)
Q Consensus 88 AYRiK~q------LadLh~------ae~~KN~-e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~--------- 145 (432)
.|....- +-.+.- +++.++. .+|-++.-.++.++.+=++||--.-++|--+-.-..|-
T Consensus 216 ~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~e 295 (775)
T PF10174_consen 216 RLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLE 295 (775)
T ss_pred HhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5543211 111111 3333332 25677777777777777777766333332222222222
Q ss_pred -----HHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHH
Q 013998 146 -----QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKE 188 (432)
Q Consensus 146 -----qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~k 188 (432)
+.+..++.|++.+.+...+.+.=-+.|+.+|.....+.+.+-.
T Consensus 296 L~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqs 343 (775)
T PF10174_consen 296 LSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQS 343 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344455666666666666555556666666666555554433
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=94.06 E-value=10 Score=40.74 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhhhhHHHH
Q 013998 233 YISALEDELEKTRSSVENLQSKLRMGLEIE 262 (432)
Q Consensus 233 yisaLEee~e~lr~si~~LQskLR~glEIE 262 (432)
-+..|+.+++.++..++.+.+.+...-+++
T Consensus 483 ~~~~le~~l~~~~~~~e~l~~~~~~~~~l~ 512 (880)
T PRK02224 483 ELEDLEEEVEEVEERLERAEDLVEAEDRIE 512 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777776666666655544444
No 12
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.81 E-value=12 Score=40.57 Aligned_cols=88 Identities=16% Similarity=0.244 Sum_probs=58.2
Q ss_pred HHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhHHH
Q 013998 239 DELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDV 318 (432)
Q Consensus 239 ee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i~Ngis~L~~~h~~~R~~Im~lL~e~~s~iks~~~~ 318 (432)
+++..+|.++..+...+|-==|.=+-|++.+..|-|. ..-...-..|-++-+---+|+.+|-+||.+-+ .|..-||.
T Consensus 447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~--~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr-~lQkeiN~ 523 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD--VNRSAYTRRILEIVKNIRKQKEEIEKILSDTR-ELQKEINS 523 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4566677777776666666544444444444444333 33344455667777777789999999999876 46677899
Q ss_pred HHhhhhccccc
Q 013998 319 IEEKTQHCDDV 329 (432)
Q Consensus 319 i~ek~~~~~n~ 329 (432)
+..|+.-.+.+
T Consensus 524 l~gkL~RtF~v 534 (594)
T PF05667_consen 524 LTGKLDRTFTV 534 (594)
T ss_pred HHHHHHhHHHH
Confidence 99999444455
No 13
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.58 E-value=9.2 Score=46.54 Aligned_cols=149 Identities=22% Similarity=0.268 Sum_probs=106.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHhhhhHHHHHhhh
Q 013998 51 RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLH---AAEVIKNMEAEKQVKFFQGCMAAAFAER 127 (432)
Q Consensus 51 RM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh---~ae~~KN~e~EkqVkFfQs~VA~AFAER 127 (432)
+.--+|.++|+.|++.|+.++++..|.+.++..|+-|+ ...+..++ .+-.+...++|..|.-+|+-++.+..+=
T Consensus 1663 ~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~---~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~ 1739 (1930)
T KOG0161|consen 1663 AEAERRLAALQAELEELREKLEALERARRQAELELEEL---AERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSEL 1739 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457999999999999999999999999999999875 56777777 4678889999999999999998877654
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhH-hHHHHHHHHHHHhhhhhhh
Q 013998 128 DNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE-SFKEVINKFYEIRQQSLEV 203 (432)
Q Consensus 128 D~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e-~~~kVi~KFyeiR~~~~e~ 203 (432)
-.+.=.+-||--.-.-|..+++.=++..--+++.-.-+.+.|-.||.-|..++.-+- .+.+.|.| .+-|.+++|-
T Consensus 1740 ~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~-Learir~LE~ 1815 (1930)
T KOG0161|consen 1740 RAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIAK-LEARIRELES 1815 (1930)
T ss_pred HhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH-HHHHHHHHHH
Confidence 444444444443444444555555555555555556666677778877777765443 33455654 4667766665
No 14
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.33 E-value=1.1 Score=40.58 Aligned_cols=43 Identities=37% Similarity=0.358 Sum_probs=2.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHH
Q 013998 80 NLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAA 122 (432)
Q Consensus 80 nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~ 122 (432)
.|++||+++||.+++++.--...-.++.++++...=-+..++.
T Consensus 78 ~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~ 120 (194)
T PF08614_consen 78 KLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAE 120 (194)
T ss_dssp ------------------------------------HHHHHHH
T ss_pred cccccccccccccccccccccccccccchhhhhHHHHHHHHHH
Confidence 4889999999999999976555555555555554444433333
No 15
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=92.98 E-value=15 Score=39.30 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013998 13 EALMARIQQLEHERDELRKDIEQL 36 (432)
Q Consensus 13 esl~aRI~qLEhERDELrKDIEqL 36 (432)
..+...+..|+.+.+++.+.++.+
T Consensus 673 ~~l~~e~~~l~~~~~~l~~~l~~~ 696 (1179)
T TIGR02168 673 LERRREIEELEEKIEELEEKIAEL 696 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544
No 16
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.87 E-value=17 Score=39.74 Aligned_cols=174 Identities=25% Similarity=0.340 Sum_probs=114.7
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhh
Q 013998 50 TRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDN 129 (432)
Q Consensus 50 TRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~ 129 (432)
+-|+.+=-..|++.-...-.++++|...|.+|.|-+.++--..+...-| ..+-..+..+|.=||..|-+
T Consensus 216 ~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~esl----re~~~~L~~D~nK~~~y~~~------- 284 (581)
T KOG0995|consen 216 SELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESL----REKKARLQDDVNKFQAYVSQ------- 284 (581)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHH----HHHHHHHHhHHHHHHHHHHH-------
Confidence 4455566667888777788999999999999999999888887777655 23334588899999988765
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccc
Q 013998 130 SVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWE 209 (432)
Q Consensus 130 slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~ 209 (432)
|+ -+-..|-++++...+-+++-++.+...+..|+.|+.-++.+ ++|..
T Consensus 285 --~~-----~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q-------------------------~iS~~ 332 (581)
T KOG0995|consen 285 --MK-----SKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ-------------------------GISGE 332 (581)
T ss_pred --HH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------------CCCHH
Confidence 33 45566888888888888888888888877777766544433 12211
Q ss_pred chhhhhcccccccccccCcchhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHH
Q 013998 210 DKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISN 285 (432)
Q Consensus 210 ~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i~N 285 (432)
+==- +.. =--.|..++.++...+|.|+.++ ++.+--.+.....+|++=+.+++.+++
T Consensus 333 dve~---mn~-------------Er~~l~r~l~~i~~~~d~l~k~v---w~~~l~~~~~f~~le~~~~~~~~l~~~ 389 (581)
T KOG0995|consen 333 DVER---MNL-------------ERNKLKRELNKIQSELDRLSKEV---WELKLEIEDFFKELEKKFIDLNSLIRR 389 (581)
T ss_pred HHHH---HHH-------------HHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 000 01245666666666666666543 344444455566677776666666655
No 17
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.63 E-value=23 Score=40.70 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=27.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 013998 53 HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (432)
Q Consensus 53 ~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL 98 (432)
.-.+.+.++..++.++.....|..+-..+++.+.+.+.+...+..+
T Consensus 222 ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l 267 (1311)
T TIGR00606 222 IRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL 267 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666666666666666666666666555555444
No 18
>PRK02224 chromosome segregation protein; Provisional
Probab=92.48 E-value=18 Score=38.96 Aligned_cols=36 Identities=25% Similarity=0.597 Sum_probs=24.9
Q ss_pred chhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHH
Q 013998 229 STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKK 267 (432)
Q Consensus 229 StskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk 267 (432)
.....+..+++.++.++..++.|...+. .++..+..
T Consensus 657 ~~~~~~~~l~~~l~~~~~~~~~l~~~i~---~~~~~~e~ 692 (880)
T PRK02224 657 RAEEYLEQVEEKLDELREERDDLQAEIG---AVENELEE 692 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 4566778888888888888888887765 34444443
No 19
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.47 E-value=2.3 Score=40.07 Aligned_cols=71 Identities=21% Similarity=0.301 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHH
Q 013998 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRI 91 (432)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRi 91 (432)
..++..|+..|+.|-.+|+.....+=-+ +.+|++.|++.+....+.......+|..|.++|.. .
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~-------------~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~---~ 151 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNT-------------WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV---A 151 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 4567788888999888888777774322 67999999999999999999999999999999987 3
Q ss_pred HHHHHHH
Q 013998 92 KGQLADL 98 (432)
Q Consensus 92 K~qLadL 98 (432)
+..+..|
T Consensus 152 ~~~~~~l 158 (206)
T PRK10884 152 QKKVDAA 158 (206)
T ss_pred HHHHHHH
Confidence 4555444
No 20
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.16 E-value=13 Score=40.27 Aligned_cols=173 Identities=19% Similarity=0.278 Sum_probs=90.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 013998 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (432)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR 90 (432)
.....+.||+.||+.--+|+.-+...= ....|.-.+..-.=+-.++..|.++++.|..++.+-+++|..|-.-.. .
T Consensus 44 Ek~~~~~~V~eLE~sL~eLk~q~~~~~-~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~---E 119 (617)
T PF15070_consen 44 EKEHDISRVQELERSLSELKNQMAEPP-PPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQ---E 119 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccC-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 356677888888887777765443311 222222111111123446777999999999999999999987733222 3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhH
Q 013998 91 IKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNA 170 (432)
Q Consensus 91 iK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~ 170 (432)
-+..|++|-..--....+.+- -++-+|+.=++| .-+-+|-..-..+-+++.+++.+.-.++.... .+..
T Consensus 120 qEerL~ELE~~le~~~e~~~D----~~kLLe~lqsdk----~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~---elt~ 188 (617)
T PF15070_consen 120 QEERLAELEEELERLQEQQED----RQKLLEQLQSDK----ATASRALSQNRELKEQLAELQDAFVKLTNENM---ELTS 188 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHhhhcccc----hHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh---HhhH
Confidence 356666652211001111111 112222221111 12333333334444555555555554433222 3457
Q ss_pred HHhhhHHHHHHhhHhHHHHHHHHHHHhh
Q 013998 171 TLRFDLEKQEELNESFKEVINKFYEIRQ 198 (432)
Q Consensus 171 ~Lq~dl~~~~eq~e~~~kVi~KFyeiR~ 198 (432)
+||.+.-.-++.+..+-.+=.|...++-
T Consensus 189 ~lq~Eq~~~keL~~kl~~l~~~l~~~~e 216 (617)
T PF15070_consen 189 ALQSEQHVKKELQKKLGELQEKLHNLKE 216 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7887777777777666666666665553
No 21
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.08 E-value=4.5 Score=35.63 Aligned_cols=100 Identities=23% Similarity=0.290 Sum_probs=71.9
Q ss_pred CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHH
Q 013998 43 PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAA 122 (432)
Q Consensus 43 pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~ 122 (432)
...+....||.++ ...+|-|+-.||.+++...++...|.+|+....+--..+. +.......+++
T Consensus 12 ~~~~~~ve~L~s~-lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~----~~~~~~~~L~~----------- 75 (120)
T PF12325_consen 12 GPSVQLVERLQSQ-LRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR----ALKKEVEELEQ----------- 75 (120)
T ss_pred CchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-----------
Confidence 3344566677654 6778999999999999999999999999988766544442 22333334443
Q ss_pred HHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 013998 123 AFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQ 168 (432)
Q Consensus 123 AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~ 168 (432)
+.+....+-.++++-+-+-.++++||+.++.+.|.+
T Consensus 76 ----------el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 76 ----------ELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred ----------HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 334455778888888888889999999999888854
No 22
>PRK09039 hypothetical protein; Validated
Probab=92.00 E-value=14 Score=36.84 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHH
Q 013998 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQ 94 (432)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~q 94 (432)
|...|..++.|-++|..-|-. ++..-.|=-.|++.|+++|..++.++....+.+.-|+.-+...|.
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~----------L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~---- 109 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAE----------LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAG---- 109 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----
Confidence 556788888899999988876 777788888999999999999999988776666544443332211
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhh
Q 013998 95 LADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRF 174 (432)
Q Consensus 95 LadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~ 174 (432)
...+++.++.=.+.-++..-++=.-+-=.....+..=+++-.+++.++..+...+..-.+++..=..|+.
T Consensus 110 ----------~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 110 ----------AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred ----------hcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222222222222211111111112233444334444445555555555555555444444455555
Q ss_pred hHHHHHHh-hHhHHHHHHHHH
Q 013998 175 DLEKQEEL-NESFKEVINKFY 194 (432)
Q Consensus 175 dl~~~~eq-~e~~~kVi~KFy 194 (432)
.|....++ ...+...=..||
T Consensus 180 ~L~~a~~~~~~~l~~~~~~~~ 200 (343)
T PRK09039 180 RLNVALAQRVQELNRYRSEFF 200 (343)
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 55555544 333334444444
No 23
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.40 E-value=30 Score=39.37 Aligned_cols=6 Identities=0% Similarity=0.047 Sum_probs=2.3
Q ss_pred cccccC
Q 013998 352 VHINND 357 (432)
Q Consensus 352 vHvs~d 357 (432)
+|+.|.
T Consensus 1052 i~a~pp 1057 (1163)
T COG1196 1052 ISARPP 1057 (1163)
T ss_pred EEEECC
Confidence 333333
No 24
>PRK03918 chromosome segregation protein; Provisional
Probab=91.16 E-value=24 Score=37.75 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=14.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 013998 133 EAEKAKEKEELMSQKFNEFQTRLEELSSEN 162 (432)
Q Consensus 133 EaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~ 162 (432)
+++.+..+-+...+++.+.+..+.+++..+
T Consensus 606 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~i 635 (880)
T PRK03918 606 ELKDAEKELEREEKELKKLEEELDKAFEEL 635 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445444444455555555554444444
No 25
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=90.98 E-value=26 Score=37.85 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=18.5
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 013998 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (432)
Q Consensus 56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEA 88 (432)
+...+..+++.+..++.....+-..+.+++.+.
T Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~ 263 (1164)
T TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISEL 263 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666655555555555543
No 26
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.73 E-value=43 Score=39.99 Aligned_cols=45 Identities=22% Similarity=0.366 Sum_probs=31.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 013998 51 RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (432)
Q Consensus 51 RM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL 98 (432)
|.++.-+++..+.....+++|...-..-..+.+++. -|+.++.+|
T Consensus 282 R~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~---ELe~rL~kL 326 (1486)
T PRK04863 282 RVHLEEALELRRELYTSRRQLAAEQYRLVEMARELA---ELNEAESDL 326 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 677888888888788777777777666666666664 355566655
No 27
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.71 E-value=12 Score=33.40 Aligned_cols=125 Identities=26% Similarity=0.335 Sum_probs=87.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccch
Q 013998 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDK 211 (432)
Q Consensus 132 mEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~K 211 (432)
+|++-|-++-+..-+++.+++.|....+..+..+..-|..|..++..+.++......-+.
T Consensus 7 ~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le-------------------- 66 (143)
T PF12718_consen 7 LEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE-------------------- 66 (143)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 455566666666668888888888888888887777788888888877766653332222
Q ss_pred hhhhcccccccccccCcchhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHH
Q 013998 212 CACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFI 283 (432)
Q Consensus 212 c~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i 283 (432)
.+...-+-+ .+..+-|.-||++++.....+.-..-|||=.=-==.|+-|+|..||.+..-|..=+
T Consensus 67 ------e~~~~~~~~-E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ 131 (143)
T PF12718_consen 67 ------ESEKRKSNA-EQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKY 131 (143)
T ss_pred ------hHHHHHHhH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Confidence 111100000 16677899999999999999988888888332223499999999999887776543
No 28
>PRK11637 AmiB activator; Provisional
Probab=88.34 E-value=30 Score=34.80 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=20.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 013998 52 MHFQRTAGLEQEIEILKQKIAACARENSNLQEELS 86 (432)
Q Consensus 52 M~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELs 86 (432)
+++.-++.++++++.+++++...-.+-..++.++.
T Consensus 37 ~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~ 71 (428)
T PRK11637 37 AFSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRA 71 (428)
T ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566777788887777655544444444444
No 29
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=87.51 E-value=48 Score=36.21 Aligned_cols=68 Identities=28% Similarity=0.410 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHH
Q 013998 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQ 94 (432)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~q 94 (432)
|+.=|+||+-|||+..--+ .--..+|-||.+.|-.++.+|++....-.+.=..|...|++ +|.+
T Consensus 2 l~e~l~qlq~Erd~ya~~l-------------k~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e---Lk~q 65 (617)
T PF15070_consen 2 LMESLKQLQAERDQYAQQL-------------KEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE---LKNQ 65 (617)
T ss_pred hHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh
Confidence 4566899999999954322 22345799999999999999999877777777777777777 6777
Q ss_pred HHHH
Q 013998 95 LADL 98 (432)
Q Consensus 95 LadL 98 (432)
++..
T Consensus 66 ~~~~ 69 (617)
T PF15070_consen 66 MAEP 69 (617)
T ss_pred hccc
Confidence 7744
No 30
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=86.55 E-value=28 Score=32.60 Aligned_cols=54 Identities=26% Similarity=0.300 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHH
Q 013998 139 EKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINK 192 (432)
Q Consensus 139 E~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~K 192 (432)
++-..+.+++.+.+.|.+.++..+..+.+..+.|..+|...++......+-++.
T Consensus 176 ~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 176 EKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566666666666666666666666777777776666666655555543
No 31
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.29 E-value=14 Score=40.64 Aligned_cols=28 Identities=11% Similarity=0.200 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhhccchhhhhHHHHHh
Q 013998 294 HSQLRVHVVNSLEEGRSHIKSISDVIEE 321 (432)
Q Consensus 294 h~~~R~~Im~lL~e~~s~iks~~~~i~e 321 (432)
=..|+..|-++|.+...+|+..|+.|..
T Consensus 683 ~~~Q~~~I~~iL~~~~~~I~~~v~~ik~ 710 (717)
T PF10168_consen 683 SESQKRTIKEILKQQGEEIDELVKQIKN 710 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999988764
No 32
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=85.05 E-value=57 Score=34.74 Aligned_cols=47 Identities=23% Similarity=0.348 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHH
Q 013998 13 EALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQ 62 (432)
Q Consensus 13 esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQ 62 (432)
+.+.+++.+++.++++.++.+.++| +|+++++.++-.+.+=-.-++.
T Consensus 265 ~~Le~ei~~le~e~~e~~~~l~~l~---~~~~p~~l~~~ll~~~~~q~~~ 311 (650)
T TIGR03185 265 EQLERQLKEIEAARKANRAQLRELA---ADPLPLLLIPNLLDSTKAQLQK 311 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cccCCHhhhHHHHHHHHHHHHH
Confidence 4666777777777777777665554 7788888887666543333433
No 33
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=84.91 E-value=68 Score=35.51 Aligned_cols=44 Identities=32% Similarity=0.360 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhh
Q 013998 234 ISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKII 277 (432)
Q Consensus 234 isaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~ 277 (432)
++.++.+++.+++.++.+..++-=+-..-..|+.+...++....
T Consensus 690 ~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 733 (908)
T COG0419 690 LEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKK 733 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77789999999999888777764421223334444444444333
No 34
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=84.71 E-value=96 Score=37.07 Aligned_cols=92 Identities=18% Similarity=0.053 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHHHHHhhh-hhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHH
Q 013998 58 AGLEQEIEILKQKIAACAR-ENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEK 136 (432)
Q Consensus 58 A~LEQeIE~Lkkkl~~c~r-En~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEK 136 (432)
++|++.|+.++.....|.| +--=+|.+.+++-+.=++..+.-..--..+.+++.+++=-|-..+.++-+-+++.-+.-.
T Consensus 468 keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~ 547 (1317)
T KOG0612|consen 468 KELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQ 547 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3455555555555555554 222234444444433333333333333344444444444455555555555555554444
Q ss_pred hHHHHHHHHHHHH
Q 013998 137 AKEKEELMSQKFN 149 (432)
Q Consensus 137 aKE~Ee~m~qk~~ 149 (432)
+.+.+..|..++.
T Consensus 548 le~~~~d~~~e~~ 560 (1317)
T KOG0612|consen 548 LEEAELDMRAESE 560 (1317)
T ss_pred HHHhhhhhhhhHH
Confidence 4455555554444
No 35
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.40 E-value=47 Score=33.23 Aligned_cols=122 Identities=20% Similarity=0.237 Sum_probs=77.8
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhh-hhhhhHHH
Q 013998 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAE-RDNSVMEA 134 (432)
Q Consensus 56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAE-RD~slmEa 134 (432)
|+.-++-=++.|...+.+.-.|...|-..+..+=.++-.|-+.|..=-.+-..+.+.+..+++|=..-+.. | ..|
T Consensus 138 R~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk-~~l--- 213 (312)
T smart00787 138 RMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAK-EKL--- 213 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHH-HHH---
Confidence 55555555667777788888888888877777777777777777655555555555555555554322211 1 111
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHH
Q 013998 135 EKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEE 181 (432)
Q Consensus 135 EKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~e 181 (432)
.+....-+.+.+++.+++.++.++.+.+.+-+.....++.+++..+.
T Consensus 214 ~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 214 KKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223345566778888888888888887777777666666666543
No 36
>PRK03918 chromosome segregation protein; Provisional
Probab=84.13 E-value=65 Score=34.59 Aligned_cols=63 Identities=25% Similarity=0.325 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhh
Q 013998 15 LMARIQQLEHERDELRKDIEQL---------CMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARE 77 (432)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqL---------CMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rE 77 (432)
+..++.+++.+.++|.+-++.| |-+.=||.|-.-.+-=+-+....|+.+|+.|++++..+..+
T Consensus 410 l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~c~~~L~~~~~~el~~~~~~ei~~l~~~~~~l~~~~~~l~~~ 481 (880)
T PRK03918 410 ITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKE 481 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555444322 34444454533333334455555666666666655555443
No 37
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=83.93 E-value=2.6 Score=37.15 Aligned_cols=55 Identities=24% Similarity=0.284 Sum_probs=43.1
Q ss_pred HHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHH
Q 013998 113 VKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEE 181 (432)
Q Consensus 113 VkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~e 181 (432)
++|-|+=-+. -|||.+.||.|||. +..|+..|+.....|+.+|..|..-..+|+-
T Consensus 6 l~fLQ~Ew~r--~ErdR~~WeiERaE------------mkarIa~LEGE~r~~e~l~~dL~rrIkMLE~ 60 (134)
T PF08232_consen 6 LHFLQTEWHR--FERDRNQWEIERAE------------MKARIAFLEGERRGQENLKKDLKRRIKMLEY 60 (134)
T ss_pred HHHHHHHHHH--HHHHHHHhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566665544 38999999999986 6678888889998899888888877777754
No 38
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=83.00 E-value=4.9 Score=43.11 Aligned_cols=122 Identities=21% Similarity=0.199 Sum_probs=55.6
Q ss_pred HHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchh
Q 013998 152 QTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTS 231 (432)
Q Consensus 152 e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tSts 231 (432)
.+++..|+..+..+.+-+..|+.++..++.+.+.. .+|+ .--...-|+=.|=+.|...|-+.-.
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~--------~L~g-----~~~~~~trVL~lr~NP~~~~~~~k~--- 565 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKL--------TLQG-----EFNPSKTRVLHLRDNPTSKAEQIKK--- 565 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCT-------BTTTEEEEEESS-HHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhcc-----ccCCCCceeeeeCCCcHHHHHHHHH---
Confidence 34444455555555555555555555555444310 0111 0012233444555555554444322
Q ss_pred hhHHHHHHHHHHHHhhHHHHhhhhhh--------hHHHH----HHhHHhHHHHHHhhhhhHHHHHHHHHH
Q 013998 232 KYISALEDELEKTRSSVENLQSKLRM--------GLEIE----NHLKKSVRELEKKIIHSDKFISNAIAE 289 (432)
Q Consensus 232 kyisaLEee~e~lr~si~~LQskLR~--------glEIE----nHLkk~~r~lEkkq~~~d~~i~Ngis~ 289 (432)
.=+.+|-.|++.|++.+..|...-.. ++..- +-|+..+..+||+..-+-.++..-+.+
T Consensus 566 ~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~e 635 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQE 635 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23566777777777777555432111 12111 235666666666665555555544443
No 39
>PRK11637 AmiB activator; Provisional
Probab=80.36 E-value=69 Score=32.30 Aligned_cols=117 Identities=12% Similarity=0.183 Sum_probs=53.1
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH-HHHHHHHHHH--------HHHH-h-hHHHHHHHHHhhhhHHHH
Q 013998 55 QRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR-IKGQLADLHA--------AEVI-K-NMEAEKQVKFFQGCMAAA 123 (432)
Q Consensus 55 QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR-iK~qLadLh~--------ae~~-K-N~e~EkqVkFfQs~VA~A 123 (432)
+....++++|..++.++.....+=..++.+|...+. ++.++...|. .=++ . ...+..-+.||. .
T Consensus 89 ~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g~~~~l~vLl~a~~~~~~~r~~~~l~-----~ 163 (428)
T PRK11637 89 RKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQGEHTGLQLILSGEESQRGERILAYFG-----Y 163 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHhcCCChhHHHHHHHHHH-----H
Confidence 344445555555555555555555555555555543 2333334444 1111 1 112332223332 2
Q ss_pred HhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHH
Q 013998 124 FAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEK 178 (432)
Q Consensus 124 FAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~ 178 (432)
|+.-|..+++.=+. .......+-.+++....+++....+++.....|+.....
T Consensus 164 i~~~d~~~l~~l~~--~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 164 LNQARQETIAELKQ--TREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55557777764322 222333444455555555555554444444444444333
No 40
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.12 E-value=72 Score=32.53 Aligned_cols=80 Identities=30% Similarity=0.431 Sum_probs=53.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHH------HHhhhhhHHHHHHHHHHHHHhhhhhcchHHH
Q 013998 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMH------FQRTAGLEQEIEILKQKIAACARENSNLQEE 84 (432)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~------~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEE 84 (432)
..+.|-.+++.||.|-..||...-+|=.--+ .| -=--+|+ --++|+ +.|-.|..-|+.++.+|...|+|
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~--~~-EekEqqLv~dcv~QL~~An--~qia~LseELa~k~Ee~~rQQEE 235 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETD--TY-EEKEQQLVLDCVKQLSEAN--QQIASLSEELARKTEENRRQQEE 235 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh--hc-cHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999988888887766632111 00 0001111 112333 34788888899999999999998
Q ss_pred HHHHHHHHHHHHHH
Q 013998 85 LSEAYRIKGQLADL 98 (432)
Q Consensus 85 LsEAYRiK~qLadL 98 (432)
.+ ++-+|++||
T Consensus 236 It---~Llsqivdl 246 (306)
T PF04849_consen 236 IT---SLLSQIVDL 246 (306)
T ss_pred HH---HHHHHHHHH
Confidence 87 578888888
No 41
>PHA02562 46 endonuclease subunit; Provisional
Probab=80.02 E-value=72 Score=32.32 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhh
Q 013998 233 YISALEDELEKTRSSVENLQSKLR 256 (432)
Q Consensus 233 yisaLEee~e~lr~si~~LQskLR 256 (432)
=|+.|+.++..+..+++.++...+
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~ 330 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMD 330 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777765555554
No 42
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=79.65 E-value=88 Score=33.10 Aligned_cols=82 Identities=21% Similarity=0.232 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHhhhh--hcchHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHH
Q 013998 59 GLEQEIEILKQKIAACARE--NSNLQEELSEAYRIKGQLADL---HAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVME 133 (432)
Q Consensus 59 ~LEQeIE~Lkkkl~~c~rE--n~nLQEELsEAYRiK~qLadL---h~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmE 133 (432)
+++.+|+.+++++..|... +..|-.--..-=.|..++..| ...|..-.+.+++...-+.+.+..+=..=+.-.-|
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554321 122222222223344444444 44677777777777777777666655555555555
Q ss_pred HHHhHHH
Q 013998 134 AEKAKEK 140 (432)
Q Consensus 134 aEKaKE~ 140 (432)
.+..++.
T Consensus 333 i~~l~~s 339 (569)
T PRK04778 333 IDRVKQS 339 (569)
T ss_pred HHHHHHc
Confidence 5555544
No 43
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=79.17 E-value=11 Score=36.28 Aligned_cols=70 Identities=31% Similarity=0.403 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcC-CchHHHhhHHHHHhhhhhHH---HHHHHHHHHHHhhhhhcc
Q 013998 12 SEALMARIQQLEH-------ERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQ---EIEILKQKIAACARENSN 80 (432)
Q Consensus 12 ~esl~aRI~qLEh-------ERDELrKDIEqLCMQQaG-pgyl~vATRM~~QRtA~LEQ---eIE~Lkkkl~~c~rEn~n 80 (432)
+-+|.+.|.-|+. |+|.|.+++++||+.-++ ++-|-+.++...+|-+-+.. .|+.|++-+..++.=+.-
T Consensus 97 ~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~tee 176 (193)
T PF14662_consen 97 QQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEE 176 (193)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4456666665554 899999999999999888 88888889999999887753 455666555544443333
Q ss_pred h
Q 013998 81 L 81 (432)
Q Consensus 81 L 81 (432)
|
T Consensus 177 L 177 (193)
T PF14662_consen 177 L 177 (193)
T ss_pred H
Confidence 3
No 44
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=77.92 E-value=51 Score=29.42 Aligned_cols=37 Identities=35% Similarity=0.303 Sum_probs=23.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 013998 53 HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (432)
Q Consensus 53 ~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY 89 (432)
+-+|...+|++|..|++|+...-.+=..+++.|.++.
T Consensus 26 le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 26 LEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777766666666666666666553
No 45
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=77.69 E-value=26 Score=27.77 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=25.7
Q ss_pred CcchhhhHHHHHHHHHHHHhhHHHHhhhhh
Q 013998 227 DTSTSKYISALEDELEKTRSSVENLQSKLR 256 (432)
Q Consensus 227 ~tStskyisaLEee~e~lr~si~~LQskLR 256 (432)
-.+...++..|++..+.+...|++|..++.
T Consensus 57 ~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~ 86 (106)
T PF01920_consen 57 KQDKEEAIEELEERIEKLEKEIKKLEKQLK 86 (106)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999988764
No 46
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.81 E-value=43 Score=31.79 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=20.0
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHhhhh
Q 013998 50 TRMHFQRTAGLEQEIEILKQKIAACARE 77 (432)
Q Consensus 50 TRM~~QRtA~LEQeIE~Lkkkl~~c~rE 77 (432)
|.-...|...||+++..|+.+|.....+
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3345578888899888888887764433
No 47
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=76.67 E-value=24 Score=27.38 Aligned_cols=58 Identities=28% Similarity=0.442 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhH----HHHHhhhhhHHHHHHHHHHHH
Q 013998 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATR----MHFQRTAGLEQEIEILKQKIA 72 (432)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATR----M~~QRtA~LEQeIE~Lkkkl~ 72 (432)
+.+-|.-|+.+.+.+.++|+.+=--=+.|||++=|.. -...+-+.++.+++.|...|.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999888889999886653 334455666666777766654
No 48
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=76.65 E-value=15 Score=29.10 Aligned_cols=74 Identities=27% Similarity=0.381 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchH----HHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhc
Q 013998 12 SEALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYL----AVATRMHFQRTAGLEQEIEILKQKIAACARENS 79 (432)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqL--------CMQQaGpgyl----~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~ 79 (432)
...+..+|.+|+++.+++.-=++.| |+...|+-|| .-+.-++-.+...++.+|++|++++..+...=.
T Consensus 14 l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~ 93 (106)
T PF01920_consen 14 LQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLK 93 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777666655444433 8888888886 346677888888888888888888777666555
Q ss_pred chHHHH
Q 013998 80 NLQEEL 85 (432)
Q Consensus 80 nLQEEL 85 (432)
+++..|
T Consensus 94 ~~~~~l 99 (106)
T PF01920_consen 94 ELKKKL 99 (106)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 49
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.54 E-value=12 Score=30.65 Aligned_cols=73 Identities=27% Similarity=0.369 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---hcCCch--H-------------HHhhHHHHHhhhhhHHHHHHHHHHHHHhhh
Q 013998 15 LMARIQQLEHERDELRKDIEQLCMQ---QAGPSY--L-------------AVATRMHFQRTAGLEQEIEILKQKIAACAR 76 (432)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCMQ---QaGpgy--l-------------~vATRM~~QRtA~LEQeIE~Lkkkl~~c~r 76 (432)
.....+.+.+|-..|++.++.|... --|++. + ....|+-++.+.-|..+|++|++|...+..
T Consensus 10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~ 89 (100)
T PF01486_consen 10 WDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEE 89 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777777663 345432 1 235678888888999999999999999999
Q ss_pred hhcchHHHHHH
Q 013998 77 ENSNLQEELSE 87 (432)
Q Consensus 77 En~nLQEELsE 87 (432)
+|..|+..+.|
T Consensus 90 en~~L~~~~~e 100 (100)
T PF01486_consen 90 ENNQLRQKIEE 100 (100)
T ss_pred HHHHHHHHhcC
Confidence 99999988754
No 50
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=76.22 E-value=87 Score=31.20 Aligned_cols=109 Identities=31% Similarity=0.415 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhH
Q 013998 59 GLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAK 138 (432)
Q Consensus 59 ~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaK 138 (432)
.++.++..++++......+.+.++.|++.+-..|+.|-.|.+-=--.|+.+- |-+..-+..-.
T Consensus 40 ~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lk-----------------eE~~~~~~eee 102 (309)
T PF09728_consen 40 RLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLK-----------------EESKRRAREEE 102 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHH
Confidence 3677788889999999999999999999999999999988553333343332 22222233333
Q ss_pred HHHHHHHHHHH----HHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhH
Q 013998 139 EKEELMSQKFN----EFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (432)
Q Consensus 139 E~Ee~m~qk~~----e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e 184 (432)
++-..++.+|. +++.++++.......+..-|..|...+..+.+|-+
T Consensus 103 ~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye 152 (309)
T PF09728_consen 103 EKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYE 152 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555553 34444444444444444455555544444444433
No 51
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=75.48 E-value=36 Score=26.39 Aligned_cols=80 Identities=28% Similarity=0.352 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHH
Q 013998 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKG 93 (432)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~ 93 (432)
....++..|+..++++...+...| + | .-....+++..=...|+..|..++..+..+-.+=...++.|.+|++=..
T Consensus 16 ~~~~~l~~L~~~~~~~~~~~~~~~-~--~--~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k 90 (123)
T PF02050_consen 16 EAEEQLEQLQQERQEYQEQLSESQ-Q--G--VSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERK 90 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHT------S--G--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-C--C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444 2 3 2123445566667789999999999999999999999999999998887
Q ss_pred HHHHH
Q 013998 94 QLADL 98 (432)
Q Consensus 94 qLadL 98 (432)
.+..|
T Consensus 91 ~~e~L 95 (123)
T PF02050_consen 91 KLEKL 95 (123)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77777
No 52
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=74.96 E-value=13 Score=30.53 Aligned_cols=55 Identities=25% Similarity=0.357 Sum_probs=46.3
Q ss_pred CcchhhhHHHHHHHHHHHHhhHHHHhhhh---------hhhHHHHHHhHHhHHHHHHhhhhhHH
Q 013998 227 DTSTSKYISALEDELEKTRSSVENLQSKL---------RMGLEIENHLKKSVRELEKKIIHSDK 281 (432)
Q Consensus 227 ~tStskyisaLEee~e~lr~si~~LQskL---------R~glEIEnHLkk~~r~lEkkq~~~d~ 281 (432)
+++.|.-|.+|++|++-++-....|+..+ |..-.+++||++-|..||.|--.+.+
T Consensus 12 ~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~ 75 (79)
T PF06657_consen 12 GEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999888885543 67889999999999999998655443
No 53
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=74.29 E-value=1.3e+02 Score=35.48 Aligned_cols=142 Identities=20% Similarity=0.179 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH-HH
Q 013998 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA-YR 90 (432)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEA-YR 90 (432)
...-++.|++|+.+-|.|.||+|.+|-=+.--++|.+ |.+--- +=.+++ -.+-+.++-.| =|
T Consensus 197 ~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~----l~~k~~-----~v~y~~--------~~~ey~~~k~~~~r 259 (1072)
T KOG0979|consen 197 LTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIEL----LEKKKK-----WVEYKK--------HDREYNAYKQAKDR 259 (1072)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcc-----ccchHh--------hhHHHHHHHHHHHH
Confidence 4455678889999999999999999976665666432 211100 001111 01122222223 36
Q ss_pred HHHHHHHHHH---HHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 013998 91 IKGQLADLHA---AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKK 167 (432)
Q Consensus 91 iK~qLadLh~---ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~ 167 (432)
.|..+-+|-. .=..+-+++|+ -++-.++.=+..-+++-++..+--...-+|.+++.++.+........|.
T Consensus 260 ~k~~~r~l~k~~~pi~~~~eeLe~-------~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~ 332 (1072)
T KOG0979|consen 260 AKKELRKLEKEIKPIEDKKEELES-------EKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKK 332 (1072)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHh-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6767666633 22345566776 3456677777777888888888888888888888888888777776665
Q ss_pred hhHHHhhhHH
Q 013998 168 QNATLRFDLE 177 (432)
Q Consensus 168 ~n~~Lq~dl~ 177 (432)
.-...|.++.
T Consensus 333 ~~~~rq~~i~ 342 (1072)
T KOG0979|consen 333 AAEKRQKRIE 342 (1072)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 54
>PRK04863 mukB cell division protein MukB; Provisional
Probab=74.05 E-value=2.1e+02 Score=34.60 Aligned_cols=74 Identities=20% Similarity=0.187 Sum_probs=61.9
Q ss_pred HhhhhHHHHHh----hhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHH
Q 013998 115 FFQGCMAAAFA----ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKE 188 (432)
Q Consensus 115 FfQs~VA~AFA----ERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~k 188 (432)
-+|+-||.+|. ||-.-|=||=+.+.+-+....++...+.++.++...+.+.+..-..|+.+....+...+...+
T Consensus 265 ~~~~~~aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee 342 (1486)
T PRK04863 265 ESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT 342 (1486)
T ss_pred hhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888884 888889999999988899999999999999999888888888888888888888777665444
No 55
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=74.04 E-value=1.1e+02 Score=31.61 Aligned_cols=180 Identities=23% Similarity=0.272 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHH
Q 013998 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKG 93 (432)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~ 93 (432)
.+..--.+++.-|+||++---+ +---.|+.|+- .+|+.-|.-+|++||. .--++|.
T Consensus 67 ~~~seq~~~~~a~~elq~~ks~----~Q~e~~v~a~e---~~~~rll~d~i~nLk~-----------------se~~lkq 122 (330)
T KOG2991|consen 67 VRLSEQDFKVMARDELQLRKSW----KQYEAYVQALE---GKYTRLLSDDITNLKE-----------------SEEKLKQ 122 (330)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhc---CcccchhHHHHHhhHH-----------------HHHHHHH
Confidence 3444445666778888653111 11134555543 3888889999999986 2235666
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHh
Q 013998 94 QLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLR 173 (432)
Q Consensus 94 qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq 173 (432)
|+++- +.+|....-.++.-+.-+-||.|++-+.|.+-.---
T Consensus 123 Q~~~a---------------------------------------~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~ 163 (330)
T KOG2991|consen 123 QQQEA---------------------------------------ARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSV 163 (330)
T ss_pred HHHHH---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Confidence 65544 344455556666777777788888877775432222
Q ss_pred hhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccC-cchhhhHHH----HHHHHHHHHhhH
Q 013998 174 FDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFND-TSTSKYISA----LEDELEKTRSSV 248 (432)
Q Consensus 174 ~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~-tStskyisa----LEee~e~lr~si 248 (432)
+.+. +-.+--.||-||.-=...++.-+--.++ +-+-..-|.|.- .-|-|-+=| |-+|++.+-...
T Consensus 164 ~qlR-----~~llDPAinl~F~rlK~ele~tk~Klee-----~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~ 233 (330)
T KOG2991|consen 164 AQLR-----STLLDPAINLFFLRLKGELEQTKDKLEE-----AQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQA 233 (330)
T ss_pred HHHH-----HHhhChHHHHHHHHHHHHHHHHHHHHHH-----HHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhh
Confidence 2221 1223467888886555555542111111 123334599984 346665533 666666654433
Q ss_pred HHHhhhhhh-hHHHHHHhHHhHH
Q 013998 249 ENLQSKLRM-GLEIENHLKKSVR 270 (432)
Q Consensus 249 ~~LQskLR~-glEIEnHLkk~~r 270 (432)
|+=|+ -||||=-++|.-+
T Consensus 234 ----s~Gria~Le~eLAmQKs~s 252 (330)
T KOG2991|consen 234 ----SEGRIAELEIELAMQKSQS 252 (330)
T ss_pred ----hcccHHHHHHHHHHHHhhH
Confidence 33344 3777777776654
No 56
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=73.27 E-value=52 Score=27.27 Aligned_cols=56 Identities=13% Similarity=0.328 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhh
Q 013998 63 EIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNS 130 (432)
Q Consensus 63 eIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~s 130 (432)
.++.|+.++..+...-.-|.-++.|+..+..-|..+ +..-+.| -.|..+|-++|..
T Consensus 7 ~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l-----------~~d~~vy-~~VG~vfv~~~~~ 62 (105)
T cd00632 7 QLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKL-----------ADDAEVY-KLVGNVLVKQEKE 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCcchHH-HHhhhHHhhccHH
Confidence 467788888888888888888888888887777655 2344445 4677888888764
No 57
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=73.25 E-value=85 Score=30.64 Aligned_cols=47 Identities=30% Similarity=0.456 Sum_probs=32.6
Q ss_pred hHHHHHhhhhhhhH-HHH--Hh----HHHHHHHH--HHHHHHHHHHHHHhHHHHHH
Q 013998 119 CMAAAFAERDNSVM-EAE--KA----KEKEELMS--QKFNEFQTRLEELSSENIEL 165 (432)
Q Consensus 119 ~VA~AFAERD~slm-EaE--Ka----KE~Ee~m~--qk~~e~e~R~~E~~s~~~~q 165 (432)
-.|+|-++||++++ +.. +. |+.++... .++.+.+.|++.|.+.+.+-
T Consensus 100 Aaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~RIK~LhaqI~EK 155 (205)
T PF12240_consen 100 AAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENRIKALHAQIAEK 155 (205)
T ss_pred HHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 34888899999554 333 33 44566555 46789999999998887543
No 58
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=73.06 E-value=42 Score=32.66 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhH
Q 013998 143 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (432)
Q Consensus 143 ~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e 184 (432)
-+..|=.-|-.|..||+.++..++.....|+.++..++.-|-
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677789999999999999999999999999999999998
No 59
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=72.09 E-value=1.1e+02 Score=30.28 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=50.9
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHH
Q 013998 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAE 135 (432)
Q Consensus 56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaE 135 (432)
|+.-++.=++.|...+.+.-.|...|...+..+-.++-.+.+. ...++.++.=.+..++. ...-|.. |.+
T Consensus 143 R~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~-------~~~L~~e~~~Lk~~~~e-~~~~D~~--eL~ 212 (325)
T PF08317_consen 143 RMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRER-------KAELEEELENLKQLVEE-IESCDQE--ELE 212 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh-hhhcCHH--HHH
Confidence 6666666566677777776666666666666555555555544 44455555555554443 4444543 333
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 013998 136 KAKEKEELMSQKFNEFQTRLEELSSEN 162 (432)
Q Consensus 136 KaKE~Ee~m~qk~~e~e~R~~E~~s~~ 162 (432)
.+|..=.....++..+...+.+++..+
T Consensus 213 ~lr~eL~~~~~~i~~~k~~l~el~~el 239 (325)
T PF08317_consen 213 ALRQELAEQKEEIEAKKKELAELQEEL 239 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333334444444444444444333
No 60
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=71.14 E-value=1.7e+02 Score=33.13 Aligned_cols=59 Identities=27% Similarity=0.410 Sum_probs=44.4
Q ss_pred HHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHH
Q 013998 120 MAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEE 181 (432)
Q Consensus 120 VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~e 181 (432)
+..++.+|++.|+|..+.|-.-+ +.|..+..|++-.++.+.-+|+--..|+.+|..+.+
T Consensus 111 l~~~l~~~~~~i~~l~~~~~~~e---~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~ 169 (769)
T PF05911_consen 111 LSKALQEKEKLIAELSEEKSQAE---AEIEDLMARLESTEKENSSLKYELHVLSKELEIRNE 169 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788899988877775544 678888889998888888888777777777766543
No 61
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=70.01 E-value=44 Score=39.22 Aligned_cols=105 Identities=24% Similarity=0.333 Sum_probs=62.5
Q ss_pred HhhhhhcchHHHHHHHHHHHHHHHHH----HHHHHH--hhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHH
Q 013998 73 ACARENSNLQEELSEAYRIKGQLADL----HAAEVI--KNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQ 146 (432)
Q Consensus 73 ~c~rEn~nLQEELsEAYRiK~qLadL----h~ae~~--KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~q 146 (432)
.|-+=|++-++=|.+|.|.+.+-.++ ++||+. +-++.=-+.-||-+-|-- +++||.++=+|| ++|-.
T Consensus 213 e~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRvee--lkedN~vLleek-----eMLee 285 (1195)
T KOG4643|consen 213 EISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEE--LKEDNRVLLEEK-----EMLEE 285 (1195)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHH--HHhhhHHHHHHH-----HHHHH
Confidence 45555666677778888887776655 445554 333444466778776644 578888877554 34555
Q ss_pred HHHHHHHHH--HHHhHHHHHHHhhhHHHhhhHHHHHHhhH
Q 013998 147 KFNEFQTRL--EELSSENIELKKQNATLRFDLEKQEELNE 184 (432)
Q Consensus 147 k~~e~e~R~--~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e 184 (432)
++..+..|- -+++|.+...|..-+.++++.....-+|+
T Consensus 286 QLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kte 325 (1195)
T KOG4643|consen 286 QLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTE 325 (1195)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 666666665 45566665555555555554444444444
No 62
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=69.41 E-value=1.7e+02 Score=32.91 Aligned_cols=38 Identities=29% Similarity=0.345 Sum_probs=26.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 013998 53 HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (432)
Q Consensus 53 ~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR 90 (432)
+.+|...|+.|+-.++..+.....||..|.....+...
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~ 69 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRK 69 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777665555433
No 63
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=68.03 E-value=1.9e+02 Score=31.71 Aligned_cols=158 Identities=21% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHH
Q 013998 13 EALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIK 92 (432)
Q Consensus 13 esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK 92 (432)
..|-.+++..++|+.+|.+=...|=-+- .=+-.|...|+.+++..+++...+...+..+....-.+..=+
T Consensus 139 ~~lQ~qlE~~qkE~eeL~~~~~~Le~e~----------~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~ 208 (546)
T PF07888_consen 139 QLLQNQLEECQKEKEELLKENEQLEEEV----------EQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEER 208 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHhh
Q 013998 93 GQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQ----TRLEELSSENIELKKQ 168 (432)
Q Consensus 93 ~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e----~R~~E~~s~~~~qK~~ 168 (432)
..|-.-+.....+-.++|.++.=....+ .|.++.+.+-..+-......+ .|+.+....+......
T Consensus 209 ~~L~~q~~e~~~ri~~LEedi~~l~qk~-----------~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~ 277 (546)
T PF07888_consen 209 ESLKEQLAEARQRIRELEEDIKTLTQKE-----------KEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQ 277 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred hHHHhhhHHHHHHhhHhHHHHHH
Q 013998 169 NATLRFDLEKQEELNESFKEVIN 191 (432)
Q Consensus 169 n~~Lq~dl~~~~eq~e~~~kVi~ 191 (432)
+..++.+...++++......-+.
T Consensus 278 ~~~~~~e~e~LkeqLr~~qe~lq 300 (546)
T PF07888_consen 278 AQQLQQENEALKEQLRSAQEQLQ 300 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
No 64
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=66.86 E-value=2.7e+02 Score=32.96 Aligned_cols=113 Identities=18% Similarity=0.166 Sum_probs=59.7
Q ss_pred CCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH-----------HHHHHHHH-----HHHHHHh
Q 013998 42 GPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR-----------IKGQLADL-----HAAEVIK 105 (432)
Q Consensus 42 Gpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR-----------iK~qLadL-----h~ae~~K 105 (432)
--.|..+..+...+..-.-..+++.++.++..+..+-...++++.++=. ++..+..| |+.. ..
T Consensus 256 y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~-~e 334 (1353)
T TIGR02680 256 YRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDA-EE 334 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH-HH
Confidence 3456665555555554444455666666666666666666665555544 23333333 2211 11
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 013998 106 NMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSEN 162 (432)
Q Consensus 106 N~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~ 162 (432)
-.+++.+++-.+...+.+... ++++..+.+..-+...+...|+.+..+.+
T Consensus 335 L~el~~ql~~~~~~a~~~~~~-------~~~a~~~~e~~~~~~~~~~~r~~~~~~~l 384 (1353)
T TIGR02680 335 LERARADAEALQAAAADARQA-------IREAESRLEEERRRLDEEAGRLDDAEREL 384 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 125566777776666655544 23344555555566666666666555543
No 65
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=66.34 E-value=97 Score=29.11 Aligned_cols=90 Identities=30% Similarity=0.344 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHH
Q 013998 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQ 94 (432)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~q 94 (432)
+..---+|+|-+.-+.. .| .|++-|+.--.+...-+-.-...|++++..+++++..+++.+.+-|.+... .++ .
T Consensus 106 l~na~a~lehq~~R~~N-Le--Ll~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~--~L~-~ 179 (221)
T PF05700_consen 106 LDNAYAQLEHQRLRLEN-LE--LLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGE--ELR-Y 179 (221)
T ss_pred HHHHHHHHHHHHHHHHH-HH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHH-H
Confidence 33333467776654332 22 478888543334444455556788899999999999999999988887443 333 6
Q ss_pred HHHHHHHHHHhhHHHH
Q 013998 95 LADLHAAEVIKNMEAE 110 (432)
Q Consensus 95 LadLh~ae~~KN~e~E 110 (432)
|..-|..-+.||-++|
T Consensus 180 Le~~W~~~v~kn~eie 195 (221)
T PF05700_consen 180 LEQRWKELVSKNLEIE 195 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777888888888777
No 66
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=65.80 E-value=2.2e+02 Score=32.29 Aligned_cols=60 Identities=27% Similarity=0.341 Sum_probs=40.3
Q ss_pred hhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhH
Q 013998 125 AERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (432)
Q Consensus 125 AERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e 184 (432)
+++++--++-.++...=+....+|.+.+..++++++.+...+..|..+-..+...++.++
T Consensus 603 ~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e 662 (769)
T PF05911_consen 603 SEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYE 662 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333343444444555566778888888888888888888888877777766655544
No 67
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=65.67 E-value=1.9e+02 Score=30.78 Aligned_cols=182 Identities=21% Similarity=0.281 Sum_probs=89.2
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHH---------hHHHHHHHHHHH
Q 013998 78 NSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEK---------AKEKEELMSQKF 148 (432)
Q Consensus 78 n~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEK---------aKE~Ee~m~qk~ 148 (432)
|.-+.+||+.+-.++ +-|--..+ .|+=-+=|+..+...|.+-+..|.+||. |+..-..+.+.+
T Consensus 39 ~~pv~~el~kvk~l~-----l~Gqt~~~---fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l 110 (560)
T PF06160_consen 39 NLPVADELSKVKKLN-----LTGQTEEK---FEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQL 110 (560)
T ss_pred cCCHHHHHHHHHhcc-----ccHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 378888887654432 22211111 2222233778888999999999999985 454444444444
Q ss_pred HHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcc---------cc
Q 013998 149 NEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLL---------DS 219 (432)
Q Consensus 149 ~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~---------ds 219 (432)
..++..+......+.++......-+ .....+-++|-++|..-+. ...+|..-+.-|-. +.
T Consensus 111 ~~~e~~i~~i~~~l~~L~~~e~~nr----------~~i~~l~~~y~~lrk~ll~-~~~~~G~a~~~Le~~L~~ie~~F~~ 179 (560)
T PF06160_consen 111 DEIEEDIKEILDELDELLESEEKNR----------EEIEELKEKYRELRKELLA-HSFSYGPAIEELEKQLENIEEEFSE 179 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH-hhhhhchhHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333222 3333445556666653332 22222222222211 12
Q ss_pred cccccccCcchhhhHHHHHHHHHHHHhhHHHHhhhhhhhH----HHHHHhHHhHHHHHHhhhhhHHHHHHH
Q 013998 220 AEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGL----EIENHLKKSVRELEKKIIHSDKFISNA 286 (432)
Q Consensus 220 ~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~gl----EIEnHLkk~~r~lEkkq~~~d~~i~Ng 286 (432)
-+.|+.+|- |+.| .+.+.+++..+..|...+..-= ++.+=+-..+.+|+ .-|.+|...|
T Consensus 180 f~~lt~~GD----~~~A-~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~---~gy~~m~~~g 242 (560)
T PF06160_consen 180 FEELTENGD----YLEA-REILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELK---EGYREMEEEG 242 (560)
T ss_pred HHHHHHCCC----HHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHH---HHHHHHHHCC
Confidence 234666654 6655 3345555555555555444322 22333333444443 3556666655
No 68
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=64.10 E-value=15 Score=27.81 Aligned_cols=43 Identities=28% Similarity=0.369 Sum_probs=31.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHH
Q 013998 53 HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQL 95 (432)
Q Consensus 53 ~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qL 95 (432)
-..+...+.++|..|++++.....+|..|++++...-.-...+
T Consensus 15 ~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~i 57 (80)
T PF04977_consen 15 GYSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYI 57 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 3445667888899999999999999999998887652333333
No 69
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=63.97 E-value=1.2e+02 Score=28.38 Aligned_cols=85 Identities=22% Similarity=0.335 Sum_probs=55.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH---HHHHhhcC--------CchHHHhhHHH--HHhhhhhHHHHHHHHHHHHHhhhh
Q 013998 11 ESEALMARIQQLEHERDELRKDIE---QLCMQQAG--------PSYLAVATRMH--FQRTAGLEQEIEILKQKIAACARE 77 (432)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIE---qLCMQQaG--------pgyl~vATRM~--~QRtA~LEQeIE~Lkkkl~~c~rE 77 (432)
....|-++|.|..+-+.+|..=+. .++..... |..-.+.+|.- -||..+|+|-...|+.+|..+...
T Consensus 17 Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~ 96 (182)
T PF15035_consen 17 LVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKA 96 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888877765441 12221110 11111222322 379999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHH
Q 013998 78 NSNLQEELSEAYRIKGQLADL 98 (432)
Q Consensus 78 n~nLQEELsEAYRiK~qLadL 98 (432)
|..|.+||. ++...+..+
T Consensus 97 N~~L~~dl~---klt~~~~~l 114 (182)
T PF15035_consen 97 NEALQEDLQ---KLTQDWERL 114 (182)
T ss_pred HHHHHHHHH---HHHHHHHHH
Confidence 999999986 445555443
No 70
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=63.96 E-value=2e+02 Score=30.39 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHH--HhhHHHHHhhhhhHHHH
Q 013998 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLA--VATRMHFQRTAGLEQEI 64 (432)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~--vATRM~~QRtA~LEQeI 64 (432)
.|.+..+|..|.++.++++..|-..---..+ .|.. ..++-+..|+..|..||
T Consensus 9 ~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~-df~~~~~~~~~L~~~~~~l~~eI 62 (593)
T PF06248_consen 9 KEDLRKSISRLSRRIEELKEEVHSMINKKYS-DFSPSLQSAKDLIERSKSLAREI 62 (593)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHH
Confidence 6788999999999999999998766554433 2322 22333455666666666
No 71
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=63.15 E-value=2.5e+02 Score=31.28 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHH
Q 013998 60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLAD 97 (432)
Q Consensus 60 LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLad 97 (432)
.+..+..+...+..+-....+|.+.-.+....+.++..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~ 309 (908)
T COG0419 272 REEELRELERLLEELEEKIERLEELEREIEELEEELEG 309 (908)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555555555555544444
No 72
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=63.07 E-value=22 Score=30.00 Aligned_cols=64 Identities=28% Similarity=0.363 Sum_probs=49.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 013998 10 NESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (432)
Q Consensus 10 ~~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEA 88 (432)
...|.|+..++....||||||+=.- -..||. ..-| +--+.|.||-+=...-.+.++|+.+.++|
T Consensus 19 k~lE~L~~eL~~it~ERnELr~~L~-----~~~~~~--~n~R--------~n~~ye~Lk~q~~~vM~dl~~l~~~~~ea 82 (84)
T PF04822_consen 19 KELERLKFELQKITKERNELRDILA-----LYTEGS--LNNR--------PNPEYEMLKSQHEEVMSDLHKLEMEITEA 82 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCC--cccC--------CChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999999996322 123444 3333 66678889888888899999999999887
No 73
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=62.98 E-value=1.3e+02 Score=27.80 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhh
Q 013998 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSL 201 (432)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~ 201 (432)
++...|..-..+++... -+.......+.-+....+|+.|.+..+++.
T Consensus 97 ~~~~~~~~k~~~~~~~~---------~~~~~e~~~~~~~~i~~ai~~~a~~~gy~~ 143 (170)
T COG2825 97 KLVNAFNKKQQEYEKDL---------NRREAEEEQKLLEKIQRAIESVAEKGGYSL 143 (170)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhCCcce
Confidence 34455555445543332 234444555555666788888777776544
No 74
>PF13514 AAA_27: AAA domain
Probab=61.36 E-value=3e+02 Score=31.51 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013998 12 SEALMARIQQLEHERDELRKDIEQLCMQ 39 (432)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQ 39 (432)
...+..||.+++.+.+.+...+..|+-.
T Consensus 745 ~~~~~~ri~~~~~~~~~f~~~~~~L~~~ 772 (1111)
T PF13514_consen 745 IRELRRRIEQMEADLAAFEEQVAALAER 772 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888888888888888853
No 75
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=61.26 E-value=1.3e+02 Score=29.99 Aligned_cols=47 Identities=32% Similarity=0.359 Sum_probs=26.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHH
Q 013998 133 EAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 179 (432)
Q Consensus 133 EaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~ 179 (432)
|.++.++.|+.....++.|+..+.+.+......+..-...+..|..+
T Consensus 86 e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 86 ELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444566666777778887777766655544444443444444333
No 76
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=61.26 E-value=87 Score=25.96 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHH-----HHhhcCCchHH----HhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhc
Q 013998 12 SEALMARIQQLEHERDEL---RKDIEQL-----CMQQAGPSYLA----VATRMHFQRTAGLEQEIEILKQKIAACARENS 79 (432)
Q Consensus 12 ~esl~aRI~qLEhERDEL---rKDIEqL-----CMQQaGpgyl~----vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~ 79 (432)
...+...+.+|+....|. .+.|+.| |....||-||. -|.-.+..|...++.+|..+.+++.....+=.
T Consensus 15 ~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~ 94 (105)
T cd00632 15 LQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLK 94 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777766544 4555554 78888988864 35667788888888888888888877766666
Q ss_pred chHHHHHH
Q 013998 80 NLQEELSE 87 (432)
Q Consensus 80 nLQEELsE 87 (432)
+++.+|.+
T Consensus 95 elk~~l~~ 102 (105)
T cd00632 95 ELQEKIQQ 102 (105)
T ss_pred HHHHHHHH
Confidence 66665544
No 77
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=61.20 E-value=2.5e+02 Score=30.64 Aligned_cols=45 Identities=24% Similarity=0.127 Sum_probs=29.8
Q ss_pred hHHHHHhhhhhHH-HHHHHHHHHHHhhhhhcchHHHHHHHHHHHHH
Q 013998 50 TRMHFQRTAGLEQ-EIEILKQKIAACARENSNLQEELSEAYRIKGQ 94 (432)
Q Consensus 50 TRM~~QRtA~LEQ-eIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~q 94 (432)
--++-++.-.++| ++++.+..+...+.+-.+|+.+++.+-..|.-
T Consensus 334 r~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~ 379 (493)
T KOG0804|consen 334 RKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKI 379 (493)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 3455677778888 78888887777666666666666655444433
No 78
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=60.34 E-value=1.9e+02 Score=29.27 Aligned_cols=191 Identities=18% Similarity=0.203 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHH
Q 013998 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKG 93 (432)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~ 93 (432)
-++.|.+.|..|.+-.+|.-..+.- --|.+|-...+=+++|. +..|+.-|+.+-..|..|.+.|-..=-.=.
T Consensus 56 ll~~~~k~L~aE~~qwqk~~peii~--~n~~VL~~lgkeelqkl------~~eLe~vLs~~q~KnekLke~LerEq~wL~ 127 (268)
T PF11802_consen 56 LLMMRVKCLTAELEQWQKRTPEIIP--LNPEVLLTLGKEELQKL------ISELEMVLSTVQSKNEKLKEDLEREQQWLD 127 (268)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCC--CCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777766666655443321 11455555555555443 334445555666666777776653322222
Q ss_pred HHHHHHHHHHHhhHHHHHHH-HHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHhhh
Q 013998 94 QLADLHAAEVIKNMEAEKQV-KFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRL---EELSSENIELKKQN 169 (432)
Q Consensus 94 qLadLh~ae~~KN~e~EkqV-kFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~---~E~~s~~~~qK~~n 169 (432)
+--.++.+--..-.++..++ .|.=+.|.+++..+ -.++|+-.+.+...+-+|-.-- -.-+....+-|.-.
T Consensus 128 Eqqql~~sL~~r~~elk~~~~~~se~rv~~el~~K------~~~~k~~~e~Ll~~LgeFLeeHfPlp~~~~~~~Kkk~~~ 201 (268)
T PF11802_consen 128 EQQQLLESLNKRHEELKNQVETFSESRVFQELKTK------IEKIKEYKEKLLSFLGEFLEEHFPLPDEQGNAKKKKKGE 201 (268)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhcCCCCcccchhhhhhccc
Confidence 22233444444455565555 56666666666554 3455555566666666664321 11111222222222
Q ss_pred HHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhh-hccc------ccchhhhhcccccc
Q 013998 170 ATLRFDLEKQEELNESFKEVINKFYEIRQQSLEV-LETS------WEDKCACLLLDSAE 221 (432)
Q Consensus 170 ~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~-~~~s------~~~Kc~~Ll~ds~~ 221 (432)
+.-..++..+.+-.| ..||+.++.-.-.-.- .+.. +.-.|+|-+.+|.|
T Consensus 202 ~e~~~~~~~l~eilE---~LmN~l~~~p~DpYv~i~~~~WPpyie~LlR~GIa~rHP~D 257 (268)
T PF11802_consen 202 DEPSAQLITLREILE---ILMNKLLDSPHDPYVKIDDSFWPPYIELLLRSGIALRHPED 257 (268)
T ss_pred cccchhhhHHHHHHH---HHHHHhcCCCCCCceecCcccChHHHHHHHHcCCeeeCCCC
Confidence 233445555554444 8899988765532222 3333 34567777777765
No 79
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=58.70 E-value=3.4e+02 Score=31.42 Aligned_cols=69 Identities=26% Similarity=0.268 Sum_probs=53.7
Q ss_pred HhhhhHHHHHhhh--hhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhh
Q 013998 115 FFQGCMAAAFAER--DNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 183 (432)
Q Consensus 115 FfQs~VA~AFAER--D~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~ 183 (432)
..++..|.|.-+- ||++.|+-+.|+.+-+++---.+|.+|+.+++...--.-+-.|||.++...+++..
T Consensus 369 ll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~el 439 (961)
T KOG4673|consen 369 LLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKEL 439 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455555666555 89999999999999999999999999999998877666666788888777665443
No 80
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=57.65 E-value=1.4e+02 Score=32.42 Aligned_cols=72 Identities=22% Similarity=0.316 Sum_probs=50.1
Q ss_pred HHHHHHHHhhhhHHHHHh-hhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhH
Q 013998 108 EAEKQVKFFQGCMAAAFA-ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (432)
Q Consensus 108 e~EkqVkFfQs~VA~AFA-ERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e 184 (432)
++|.|-.+|-...--+=+ +-|.+.+|++| ..|.+++.+++.++...++....+++.|-.|+.++-....+.+
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~k-----k~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~ 420 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEK-----KIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLK 420 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444455555544444444 55677777554 4577888999999999999999999999888888765544433
No 81
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=57.64 E-value=3.6e+02 Score=31.34 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=39.6
Q ss_pred HHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 013998 101 AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIE 164 (432)
Q Consensus 101 ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~ 164 (432)
.++..-.+-+..|.=|+.-+..-|..+|.-.-+.-..++.....-+++..++.++..+.+....
T Consensus 785 ~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 848 (1201)
T PF12128_consen 785 KELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQ 848 (1201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566677778888888888876433334444444445556777777776666555543
No 82
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=57.31 E-value=1.8e+02 Score=27.62 Aligned_cols=74 Identities=22% Similarity=0.119 Sum_probs=46.7
Q ss_pred HHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhH
Q 013998 111 KQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (432)
Q Consensus 111 kqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e 184 (432)
++|.-...--|+.-.++|+.-.+++..+.+=+.-.+.....+.-+..+.+.+++..-....|+..+..+++...
T Consensus 61 ~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 61 RQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 33333344446667777777777777776666556666666666666666666666666666666666666555
No 83
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=57.12 E-value=1.6e+02 Score=26.96 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 013998 62 QEIEILKQKIAACARENSNLQEELSEAY 89 (432)
Q Consensus 62 QeIE~Lkkkl~~c~rEn~nLQEELsEAY 89 (432)
.+|++|+.+++..+.+...|..||.-..
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554544444333
No 84
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=56.22 E-value=1.6e+02 Score=26.95 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 013998 13 EALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELS 86 (432)
Q Consensus 13 esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELs 86 (432)
..+...|.++..+++.|+..|+.+=....++.. ...+.+......++..+..|+..+....++....++.+.
T Consensus 23 ~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~--~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~ 94 (302)
T PF10186_consen 23 LELRSELQQLKEENEELRRRIEEILESDSNGQL--LEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLE 94 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888899999999999987653333322 122222233333444444454444444444444444433
No 85
>PRK11281 hypothetical protein; Provisional
Probab=55.64 E-value=4.1e+02 Score=31.40 Aligned_cols=162 Identities=17% Similarity=0.204 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HhhcCCchHHHhhHHHH--HhhhhhHHH---------------HHHHHHHHH
Q 013998 14 ALMARIQQLEHERDELRKDIEQLC----MQQAGPSYLAVATRMHF--QRTAGLEQE---------------IEILKQKIA 72 (432)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLC----MQQaGpgyl~vATRM~~--QRtA~LEQe---------------IE~Lkkkl~ 72 (432)
.|.+++.+++.+..+.++|..++= -+|.-|-- +-|+|-. +|+..+.+. ...|+..+.
T Consensus 125 qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PER--AQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~ 202 (1113)
T PRK11281 125 QLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPER--AQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQA 202 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH--HHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHH
Confidence 388888888888888888887663 34555655 3333322 222222211 223344455
Q ss_pred HhhhhhcchHHHHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHH---HHhhhhhhhHHHHH-------
Q 013998 73 ACARENSNLQEELSE------AYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAA---AFAERDNSVMEAEK------- 136 (432)
Q Consensus 73 ~c~rEn~nLQEELsE------AYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~---AFAERD~slmEaEK------- 136 (432)
+...+|.-++.||.. -|+.+..+... +-..+|.++.+.|..+.. .-+|- .+-||+.
T Consensus 203 ~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~------~~~~~~~~~~~lq~~in~kr~~~se~--~~~~a~~~~~~~~~ 274 (1113)
T PRK11281 203 LLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTA------RIQRLEHQLQLLQEAINSKRLTLSEK--TVQEAQSQDEAARI 274 (1113)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhhccc
Confidence 555555555555532 23333322222 334567777777776654 22221 2222211
Q ss_pred --------hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHh
Q 013998 137 --------AKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185 (432)
Q Consensus 137 --------aKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~ 185 (432)
.-+.-..+++.+.+.-+|+..+..+...-|..-+.+.-.+..++||.+.
T Consensus 275 ~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~ 331 (1113)
T PRK11281 275 QANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISV 331 (1113)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122345666666666777777666666666666666666666666653
No 86
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=55.29 E-value=4.2e+02 Score=31.38 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhh
Q 013998 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACAR 76 (432)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~r 76 (432)
.+.+...|.+...+-.++++.++. ..+..|.|.+-.+. ..|||.+......|...-+
T Consensus 67 ~~~~~~~i~~ap~~~~~~~~~l~~--~~~~~~~~~~~~s~------~~Leq~l~~~~~~L~~~q~ 123 (1109)
T PRK10929 67 AKQYQQVIDNFPKLSAELRQQLNN--ERDEPRSVPPNMST------DALEQEILQVSSQLLEKSR 123 (1109)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHh--hhcccccccccCCH------HHHHHHHHHHHHHHHHHHH
Confidence 445556666666677778888886 45555666333222 4556555555444444333
No 87
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=55.22 E-value=2.2e+02 Score=28.12 Aligned_cols=60 Identities=25% Similarity=0.273 Sum_probs=38.6
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHH
Q 013998 131 VMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190 (432)
Q Consensus 131 lmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi 190 (432)
--|-..+|++.....-++.++..+..+++..+...+.--..+..++...++-.+.-...|
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i 154 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEI 154 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777778888888777777777666655555555555554444333333
No 88
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=53.79 E-value=2.7e+02 Score=28.65 Aligned_cols=114 Identities=24% Similarity=0.357 Sum_probs=72.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhH
Q 013998 54 FQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY-RIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVM 132 (432)
Q Consensus 54 ~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY-RiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slm 132 (432)
-.+-.++|.-+-.|+.=+..++|=+-.|.||.-.++ +||..+++|+ + .+.+|--+||
T Consensus 149 KKlg~nIEKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~------------------~----cL~dREvaLl 206 (302)
T PF07139_consen 149 KKLGPNIEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQ------------------S----CLMDREVALL 206 (302)
T ss_pred cccCccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH------------------H----HHHHHHHHHH
Confidence 356789999999999999999999999999997655 8999999993 3 3456777766
Q ss_pred -HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhH-HHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhh
Q 013998 133 -EAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNA-TLRFDLEKQEELNESFKEVINKFYEIRQQSLEV 203 (432)
Q Consensus 133 -EaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~-~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~ 203 (432)
|-.|+| +|+|. -|..=+++.+ ++|++-| |-||- ++|.--+..=|.-|--=|.++-+-
T Consensus 207 ~EmdkVK--~EAme-iL~aRqkkAe-------eLkrltd~A~~Ms----E~Ql~ELRadIK~fvs~rk~de~l 265 (302)
T PF07139_consen 207 AEMDKVK--AEAME-ILDARQKKAE-------ELKRLTDRASQMS----EEQLAELRADIKHFVSERKYDEEL 265 (302)
T ss_pred HHHHHHH--HHHHH-HHHHHHHHHH-------HHHHHHHHHhhcC----HHHHHHHHHHHHHHhhhhhhHHHH
Confidence 444444 55552 1222233333 3333332 22322 233333445667777777766543
No 89
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=53.52 E-value=4.6e+02 Score=31.27 Aligned_cols=149 Identities=19% Similarity=0.245 Sum_probs=98.2
Q ss_pred HHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHH
Q 013998 101 AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180 (432)
Q Consensus 101 ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~ 180 (432)
....++.++.+...=++-.++..-.|=|.-=-|++-+++.-......+++++.-..+.++.+.+.|.--+.|...+..++
T Consensus 306 ~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~ 385 (1074)
T KOG0250|consen 306 EKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLE 385 (1074)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666667777776666555555666666666666677777777777777777777777777777777666
Q ss_pred HhhHhHHHH-HHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhhhHHHHHHHHHHHHhhHHHHhhhhhhhH
Q 013998 181 ELNESFKEV-INKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGL 259 (432)
Q Consensus 181 eq~e~~~kV-i~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~gl 259 (432)
+++--..+. +. .-++|- -...+=|..||+++.+|+.+...++++++.+=
T Consensus 386 ~~~~~~~~~~~~---------------e~e~k~---------------~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ 435 (1074)
T KOG0250|consen 386 KQTNNELGSELE---------------ERENKL---------------EQLKKEVEKLEEQINSLREELNEVKEKAKEEE 435 (1074)
T ss_pred HHHHhhhhhhHH---------------HHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 666211110 00 001111 12345678899999999999999999999887
Q ss_pred HHHHHhHHhHHHHHHhhhhh
Q 013998 260 EIENHLKKSVRELEKKIIHS 279 (432)
Q Consensus 260 EIEnHLkk~~r~lEkkq~~~ 279 (432)
|==-|++..++.|.+++-.+
T Consensus 436 ee~~~i~~~i~~l~k~i~~~ 455 (1074)
T KOG0250|consen 436 EEKEHIEGEILQLRKKIENI 455 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 76667877777777766543
No 90
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=52.09 E-value=52 Score=25.92 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=33.5
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013998 268 SVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLE 306 (432)
Q Consensus 268 ~~r~lEkkq~~~d~~i~Ngis~L~~~h~~~R~~Im~lL~ 306 (432)
++.+|+.+-+..|..|..-|.+|++-|..-|.-|+.-++
T Consensus 9 s~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldAie 47 (49)
T PF11629_consen 9 SYEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDAIE 47 (49)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHHHh
Confidence 456788888999999999999999999999998876553
No 91
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=51.33 E-value=1.8e+02 Score=30.14 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=17.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhhcc
Q 013998 52 MHFQRTAGLEQEIEILKQKIAACARENSN 80 (432)
Q Consensus 52 M~~QRtA~LEQeIE~Lkkkl~~c~rEn~n 80 (432)
-...+.+.|+++|..|+.+++.+..+...
T Consensus 68 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 96 (525)
T TIGR02231 68 PDPERLAELRKQIRELEAELRDLEDRGDA 96 (525)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777766655543333
No 92
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=49.87 E-value=2.2e+02 Score=26.65 Aligned_cols=96 Identities=20% Similarity=0.313 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhh--HHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 013998 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVAT--RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (432)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vAT--RM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY 89 (432)
+..|..=+..++.|+.+|++++.+.=--.. ..-..=+ +..-+...+|+.+-+.|..+...+-+|...|+.
T Consensus 57 N~~L~epL~~a~~e~~eL~k~L~~y~kdK~--~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~------ 128 (201)
T PF13851_consen 57 NKRLSEPLKKAEEEVEELRKQLKNYEKDKQ--SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR------ 128 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 445556667788899999998765322111 1100000 122344555555556666666555555544443
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 013998 90 RIKGQLADLHAAEVIKNMEAEKQVKF 115 (432)
Q Consensus 90 RiK~qLadLh~ae~~KN~e~EkqVkF 115 (432)
|.-+.+-+..+..-+||.=||+.+.=
T Consensus 129 kf~~~i~evqQk~~~kn~lLEkKl~~ 154 (201)
T PF13851_consen 129 KFESAIQEVQQKTGLKNLLLEKKLQA 154 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455668888888899999988753
No 93
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=49.83 E-value=1.3e+02 Score=24.61 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013998 13 EALMARIQQLEHERDELRKDIEQLC 37 (432)
Q Consensus 13 esl~aRI~qLEhERDELrKDIEqLC 37 (432)
-.+..++..|.++|+.+.|.|-++=
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~ 63 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLK 63 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 3566777788888888888887653
No 94
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=49.02 E-value=2.3e+02 Score=30.18 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=68.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 013998 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (432)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR 90 (432)
..++.+.-|..||.+.-+++-+.-+|=.. ..|.. -.-..+-.|+++|++.|...+.++++-.. +.+|-.
T Consensus 280 ~a~~~~~lI~~Le~qLa~~~aeL~~L~~~-~~p~s--PqV~~l~~rI~aLe~QIa~er~kl~~~~g-~~~la~------- 348 (434)
T PRK15178 280 TITAIYQLIAGFETQLAEAKAEYAQLMVN-GLDQN--PLIPRLSAKIKVLEKQIGEQRNRLSNKLG-SQGSSE------- 348 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCC--CchhHHHHHHHHHHHHHHHHHHHhhcCCC-CCchhH-------
Confidence 36788899999999999999988877332 23333 11245667899999999999999974321 112211
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHh
Q 013998 91 IKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKA 137 (432)
Q Consensus 91 iK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKa 137 (432)
.+ +.=.+|+-+..|=|...+.|.+--+++-+||.+.
T Consensus 349 ---~l--------aeYe~L~le~efAe~~y~sAlaaLE~AR~EA~RQ 384 (434)
T PRK15178 349 ---SL--------SLFEDLRLQSEIAKARWESALQTLQQGKLQALRE 384 (434)
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 1113444555566666677777777777777653
No 95
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=48.59 E-value=2.3e+02 Score=26.38 Aligned_cols=73 Identities=25% Similarity=0.383 Sum_probs=40.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 013998 10 NESEALMARIQQLEHERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (432)
Q Consensus 10 ~~~esl~aRI~qLEhERDELrKDIEqLCMQQaG-pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsE 87 (432)
+..+.|.+.|..++.+..+|...|+.. .+| |.. ..-.....+-..|++++..|+++|....+-+...-+++-+
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~---~~~r~~~--~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~ 142 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEA---KKGREES--EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKE 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 345667777777777777777777776 233 222 2222344455555566666666666554444444444433
No 96
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=48.55 E-value=4.1e+02 Score=29.31 Aligned_cols=237 Identities=24% Similarity=0.266 Sum_probs=123.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH-
Q 013998 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY- 89 (432)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY- 89 (432)
+.+.+...|..|++|-++|++=.+-.=-=-.| .---.++++-|.+.++-++..++.....|.-|..-|..|.+.-|
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~---~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~ 183 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRG---AREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLRE 183 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh---hHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 34556667777888888877755543111112 11235678888888888888888777776655444443333111
Q ss_pred ---HHHHHHHHH---HHHHHHhhHHHHHHHHHhhhhHH------HHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013998 90 ---RIKGQLADL---HAAEVIKNMEAEKQVKFFQGCMA------AAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEE 157 (432)
Q Consensus 90 ---RiK~qLadL---h~ae~~KN~e~EkqVkFfQs~VA------~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E 157 (432)
++|.+|.+= .-.--.+...|.+.+.|-+.--- .+++.||..
T Consensus 184 ~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t--------------------------- 236 (546)
T KOG0977|consen 184 ELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTT--------------------------- 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc---------------------------
Confidence 344444421 12223445566666666553211 122223322
Q ss_pred HhHHHHHHHhhhHHHhhh-------HHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcch
Q 013998 158 LSSENIELKKQNATLRFD-------LEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTST 230 (432)
Q Consensus 158 ~~s~~~~qK~~n~~Lq~d-------l~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tSt 230 (432)
......+.+.|+.- +.....+|. +=|...|..+-+...-.. + +.
T Consensus 237 ----~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR---~diE~~Y~~kI~~i~~~~---~-------------------~~ 287 (546)
T KOG0977|consen 237 ----ADNREYFKNELALAIREIRAQYEAISRQNR---KDIESWYKRKIQEIRTSA---E-------------------RA 287 (546)
T ss_pred ----ccchHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHhhh---c-------------------cc
Confidence 01111222223322 333333333 667777776654433211 1 11
Q ss_pred hhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHH-HhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013998 231 SKYISALEDELEKTRSSVENLQSKLRMGLEIEN-HLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEE 307 (432)
Q Consensus 231 skyisaLEee~e~lr~si~~LQskLR~glEIEn-HLkk~~r~lEkkq~~~d~~i~Ngis~L~~~h~~~R~~Im~lL~e 307 (432)
+--+...-||+.++|..|+.|+.||.= ||.-| -|-++++.|+-...=--.+..-.|.+.-.-....|++.-.++-|
T Consensus 288 ~~~~~~~rEEl~~~R~~i~~Lr~klse-lE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~E 364 (546)
T KOG0977|consen 288 NVEQNYAREELRRIRSRISGLRAKLSE-LESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVE 364 (546)
T ss_pred cchhHHHHHHHHHHHhcccchhhhhcc-ccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 112334568889999999988888752 23222 35566666665544444455555555555556666666555543
No 97
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=48.11 E-value=1.7e+02 Score=24.64 Aligned_cols=57 Identities=18% Similarity=0.363 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhh
Q 013998 62 QEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNS 130 (432)
Q Consensus 62 QeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~s 130 (432)
.....++.++......-..|.-++.|+-.+...|..| ....+.|- .|...|-++|..
T Consensus 10 ~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l-----------~~d~~vyk-~VG~vlv~~~~~ 66 (110)
T TIGR02338 10 AQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERL-----------PDDTPVYK-SVGNLLVKTDKE 66 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCcchhHH-HhchhhheecHH
Confidence 3456677777777777788888888888888877766 23444554 467788887754
No 98
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=47.76 E-value=63 Score=27.80 Aligned_cols=29 Identities=31% Similarity=0.320 Sum_probs=6.8
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhhhhHHHH
Q 013998 106 NMEAEKQVKFFQGCMAAAFAERDNSVMEAE 135 (432)
Q Consensus 106 N~e~EkqVkFfQs~VA~AFAERD~slmEaE 135 (432)
+.+|++|+|.|.. .|.-++..|..||+..
T Consensus 28 ~~eLe~q~k~F~~-qA~~V~~wDr~Lv~n~ 56 (116)
T PF05064_consen 28 NKELEEQEKEFNE-QATQVNAWDRQLVENG 56 (116)
T ss_dssp ----------------------TCHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 5688999999986 5788999999999854
No 99
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=47.76 E-value=4.5e+02 Score=29.47 Aligned_cols=89 Identities=28% Similarity=0.403 Sum_probs=48.5
Q ss_pred HHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchh
Q 013998 152 QTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTS 231 (432)
Q Consensus 152 e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tSts 231 (432)
..|..++++.+ ..|++||...+++.. ..-...-++|.+.-+- +.-+-+|+
T Consensus 544 r~r~~~lE~E~-------~~lr~elk~kee~~~---~~e~~~~~lr~~~~e~-----~~~~e~L~--------------- 593 (697)
T PF09726_consen 544 RQRRRQLESEL-------KKLRRELKQKEEQIR---ELESELQELRKYEKES-----EKDTEVLM--------------- 593 (697)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhh-----hhhHHHHH---------------
Confidence 44555555544 345667776666666 4444445666653110 00112222
Q ss_pred hhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHH
Q 013998 232 KYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELE 273 (432)
Q Consensus 232 kyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lE 273 (432)
--++++.+....|.++++- -=||=|++=-.|-.--|.||
T Consensus 594 ~aL~amqdk~~~LE~sLsa---EtriKldLfsaLg~akrq~e 632 (697)
T PF09726_consen 594 SALSAMQDKNQHLENSLSA---ETRIKLDLFSALGDAKRQLE 632 (697)
T ss_pred HHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHH
Confidence 2467778887777776653 33566666666666556555
No 100
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=47.29 E-value=2.3e+02 Score=26.01 Aligned_cols=39 Identities=31% Similarity=0.346 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhH
Q 013998 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (432)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e 184 (432)
.+....+.|+..+...+..+++.....+..+..+++.++
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~ 101 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLE 101 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666777766776666666666666766666665
No 101
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.29 E-value=3e+02 Score=31.02 Aligned_cols=92 Identities=25% Similarity=0.286 Sum_probs=53.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHH
Q 013998 57 TAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEK 136 (432)
Q Consensus 57 tA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEK 136 (432)
....+.+|..+.+++....++|.+|+-++-+--++-.-| |.++.=|.-. ++-+.
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L--------------~~~l~~~~r~------------~~~~~ 470 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKL--------------ESELERFRRE------------VRDKV 470 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH------------HHHHH
Confidence 366778888888899999999999988876544332222 2222111111 11111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHH
Q 013998 137 AKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180 (432)
Q Consensus 137 aKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~ 180 (432)
-...++...+.|+..|+..+.+.+.--+.|...|+.++
T Consensus 471 ------~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 471 ------RKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234555566666666666666666666666666654
No 102
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=47.27 E-value=2.4e+02 Score=30.77 Aligned_cols=17 Identities=41% Similarity=0.563 Sum_probs=10.0
Q ss_pred HhhhhhHHHHHHHHHHH
Q 013998 55 QRTAGLEQEIEILKQKI 71 (432)
Q Consensus 55 QRtA~LEQeIE~Lkkkl 71 (432)
.|...||||.-.|++||
T Consensus 208 KrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 208 KRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45556666666666665
No 103
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=46.92 E-value=6.4 Score=43.67 Aligned_cols=244 Identities=22% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHH
Q 013998 16 MARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQL 95 (432)
Q Consensus 16 ~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qL 95 (432)
......|+.|.++|.+.++..=.| ++.+||- -..|++.++.++..|...++...+|+..|..+=.=...|
T Consensus 207 ~~~k~kL~~E~~eL~~qLee~e~~------~~~l~r~----k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L 276 (859)
T PF01576_consen 207 TEQKAKLQSENSELTRQLEEAESQ------LSQLQRE----KSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQL 276 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH----HHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHH
Confidence 334444555556666655554433 2233332 345888899999999999999999988777654322222
Q ss_pred HHHHHHHHHhhHH-------HHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 013998 96 ADLHAAEVIKNME-------AEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQ 168 (432)
Q Consensus 96 adLh~ae~~KN~e-------~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~ 168 (432)
-+.+.-+-..-.+ +..++.|+...+-+.+..|-..+-|+- ..+..++.+.+..++++.+.+...++.
T Consensus 277 ~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaK------KkL~~~L~el~e~le~~~~~~~~LeK~ 350 (859)
T PF01576_consen 277 REQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAK------KKLERKLQELQEQLEEANAKVSSLEKT 350 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222233 445666666666666666554444432 345678999999999999999999999
Q ss_pred hHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhccccc----ccccccC---c------chhhhHH
Q 013998 169 NATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSA----EMWSFND---T------STSKYIS 235 (432)
Q Consensus 169 n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~----~~WSfn~---t------Stskyis 235 (432)
...|+.++..+.-..+.....+. -.+=+++..+-.-..|..+|.-+-...+ +.+.+.. . -.---+.
T Consensus 351 k~rL~~EleDl~~eLe~~~~~~~-~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e 429 (859)
T PF01576_consen 351 KKRLQGELEDLTSELEKAQAAAA-ELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLE 429 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Confidence 98888888777655553322221 1111222222222455555543321111 1122110 0 0111234
Q ss_pred HHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhh
Q 013998 236 ALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKI 276 (432)
Q Consensus 236 aLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq 276 (432)
.|+-++..|.+.|+.|-+.+--|---=.-|.+..|.||...
T Consensus 430 ~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~ 470 (859)
T PF01576_consen 430 ELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEK 470 (859)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHH
Confidence 55555566666666666665543211133555666665543
No 104
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=46.52 E-value=2.6e+02 Score=26.46 Aligned_cols=226 Identities=16% Similarity=0.172 Sum_probs=125.8
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHH
Q 013998 55 QRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEA 134 (432)
Q Consensus 55 QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEa 134 (432)
.+.-+|.-.|+++...|...... -.-.|.++..+.+. ...++.++.-++..+..+.+.=+..--.+
T Consensus 17 ~~~~~l~~~~e~~~~~L~~~~~~----------~~~~~~~~~~~e~~----l~~L~~d~~~L~~k~~~~~~~~~~l~~~t 82 (264)
T PF06008_consen 17 PAPYKLLSSIEDLTNQLRSYRSK----------LNPQKQQLDPLEKE----LESLEQDVENLQEKATKVSRKAQQLNNNT 82 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcc----------chhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677777755443222 22233334444222 45678888888888888888877777788
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-hhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhh--hccc-ccc
Q 013998 135 EKAKEKEELMSQKFNEFQTRLEELSSENIELKK-QNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEV--LETS-WED 210 (432)
Q Consensus 135 EKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~-~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~--~~~s-~~~ 210 (432)
+.-..+-+.....+..+...+.++-+++...-. ....-..++...-+.-+..++- ||.|++.- .... -..
T Consensus 83 ~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~e------mr~r~f~~~~~~Ae~El~ 156 (264)
T PF06008_consen 83 ERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEE------MRKRDFTPQRQNAEDELK 156 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHH------HHhccchhHHHHHHHHHH
Confidence 888888888888888888888887776654443 1111223333333333433333 44443211 1122 223
Q ss_pred hhhhhccccccccccc--C-----cchhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHH
Q 013998 211 KCACLLLDSAEMWSFN--D-----TSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFI 283 (432)
Q Consensus 211 Kc~~Ll~ds~~~WSfn--~-----tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i 283 (432)
.+..||.-....|... + .+...-++-.+..+..++..+..-+.+.|-.=.+=.|-+++.+.++++.--+
T Consensus 157 ~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l---- 232 (264)
T PF06008_consen 157 EAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQEL---- 232 (264)
T ss_pred HHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4555554444332333 1 2344555556666667777777777777777666555555555554443221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccchhhhh
Q 013998 284 SNAIAELRLCHSQLRVHVVNSLEEGRSHIKSI 315 (432)
Q Consensus 284 ~Ngis~L~~~h~~~R~~Im~lL~e~~s~iks~ 315 (432)
..++..+.+.|.++...|.-+
T Consensus 233 -----------~~~~~~~~~~L~~a~~~L~~a 253 (264)
T PF06008_consen 233 -----------SEQQNEVSETLKEAEDLLDQA 253 (264)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHH
Confidence 123455666666666655443
No 105
>PLN02939 transferase, transferring glycosyl groups
Probab=46.09 E-value=5.6e+02 Score=30.17 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=20.9
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013998 129 NSVMEAEKAKEKEELMSQKFNEFQTRLEE 157 (432)
Q Consensus 129 ~slmEaEKaKE~Ee~m~qk~~e~e~R~~E 157 (432)
.+|-+.+|.--..|+.-.+++-++.|+.|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 153 QALEDLEKILTEKEALQGKINILEMRLSE 181 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 44555566555556667899999999998
No 106
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=44.82 E-value=2.8e+02 Score=26.22 Aligned_cols=109 Identities=20% Similarity=0.326 Sum_probs=65.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhH-hHHHHHHHHHHHhhhhhhhhcccccchhhh
Q 013998 136 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE-SFKEVINKFYEIRQQSLEVLETSWEDKCAC 214 (432)
Q Consensus 136 KaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e-~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~ 214 (432)
+.|+....+++=+.+|+.++.++...+.+ ..+.+-..+...+++-. .=+..|..+|+=.|....-.-..|+.+
T Consensus 61 ~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~---~~~~I~~~ik~~Ee~~k~~k~~~i~~~~~~~~~~~~v~~~~fe~~--- 134 (215)
T PF07083_consen 61 KRKEIKKEYSKPIKEFEAKIKELIAPIDE---ASDKIDEQIKEFEEKEKEEKREKIKEYFEEMAEEYGVDPEPFERI--- 134 (215)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHhhh---
Confidence 45677788889999999999999877654 33444444444444332 224556666655553332222334433
Q ss_pred hcccccccccccCcchhhhHHHHHHHHHHHHhhHHHHhhh
Q 013998 215 LLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSK 254 (432)
Q Consensus 215 Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQsk 254 (432)
-...|.=.++|..+-+..++..+.++.....-+-..
T Consensus 135 ----~~~~wlnks~s~kk~~eei~~~i~~~~~~~~~~~~~ 170 (215)
T PF07083_consen 135 ----IKPKWLNKSYSLKKIEEEIDDQIDKIKQDLEEIKAA 170 (215)
T ss_pred ----cchHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888887777776666665555544433
No 107
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=44.65 E-value=7.3 Score=41.82 Aligned_cols=121 Identities=23% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH---------HHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHH--
Q 013998 65 EILKQKIAACARENSNLQEELSEAYRIKGQLADL---------HAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVME-- 133 (432)
Q Consensus 65 E~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL---------h~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmE-- 133 (432)
+.+.+.+..+..+|..|+-.-.+|-.+|..|+-| ..+++.+-++=-..+.||..-| ..+-|+-..+|+
T Consensus 270 e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qv-k~Lee~N~~l~e~~ 348 (713)
T PF05622_consen 270 EELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQV-KELEEDNAVLLETK 348 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3444555555666666666666666666666544 1223333333333455555555 333333333332
Q ss_pred --HHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhH
Q 013998 134 --AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 186 (432)
Q Consensus 134 --aEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~ 186 (432)
.|..-.+-.+...++..+...+-+++..+.+...-.+.|.+++..+++.++.+
T Consensus 349 ~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l 403 (713)
T PF05622_consen 349 AMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEAL 403 (713)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122233344444445555555555555555556666666666655533
No 108
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=44.57 E-value=1.9e+02 Score=24.29 Aligned_cols=78 Identities=23% Similarity=0.296 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchHH----HhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhc
Q 013998 12 SEALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYLA----VATRMHFQRTAGLEQEIEILKQKIAACARENS 79 (432)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqL--------CMQQaGpgyl~----vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~ 79 (432)
...+...+.+|+.+..|...=++.| |.-..||-||- -|--=+--|...++-.|..|.+++..+...=.
T Consensus 19 ~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~ 98 (110)
T TIGR02338 19 LQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLK 98 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778887777776655544 77777776642 22333556667777777788877777777767
Q ss_pred chHHHHHHHH
Q 013998 80 NLQEELSEAY 89 (432)
Q Consensus 80 nLQEELsEAY 89 (432)
++|..|-+++
T Consensus 99 e~q~~l~~~~ 108 (110)
T TIGR02338 99 ELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHh
Confidence 7777766654
No 109
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=44.13 E-value=54 Score=27.60 Aligned_cols=38 Identities=29% Similarity=0.444 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhh
Q 013998 234 ISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIH 278 (432)
Q Consensus 234 isaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~ 278 (432)
|..+..++++++.+|+.+|.+|+. |.++-+++|.-+|+
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~-------Le~qk~E~EN~EIv 40 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKE-------LEAQKTEAENLEIV 40 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 567889999999999999999985 56677777777765
No 110
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=43.32 E-value=2.9e+02 Score=25.97 Aligned_cols=124 Identities=23% Similarity=0.303 Sum_probs=64.0
Q ss_pred hHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHH
Q 013998 45 YLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAF 124 (432)
Q Consensus 45 yl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AF 124 (432)
|-.=.|+=.-.=+..|-.+|+.++++.....+.=..++ .|-.|++--|. .......+|.++++||++
T Consensus 17 YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~---~eN~~L~epL~----~a~~e~~eL~k~L~~y~k------ 83 (201)
T PF13851_consen 17 YYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEIS---QENKRLSEPLK----KAEEEVEELRKQLKNYEK------ 83 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHH----HHHHHHHHHHHHHHHHHH------
Confidence 44444444444445555555555554433322211111 11222222222 224556777888888754
Q ss_pred hhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHH-HHHHHHHHHhhhh
Q 013998 125 AERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFK-EVINKFYEIRQQS 200 (432)
Q Consensus 125 AERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~-kVi~KFyeiR~~~ 200 (432)
|+ +.+..+..|+..++..+.+++.-+..|...+..+...-+-+. +.-..+|+|.+.+
T Consensus 84 ---dK----------------~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~ 141 (201)
T PF13851_consen 84 ---DK----------------QSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKT 141 (201)
T ss_pred ---HH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 345556666777777777777777777776666655544333 3444556666543
No 111
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=42.88 E-value=2.4e+02 Score=24.99 Aligned_cols=13 Identities=31% Similarity=0.345 Sum_probs=5.0
Q ss_pred HhhhHHHHHHhhH
Q 013998 172 LRFDLEKQEELNE 184 (432)
Q Consensus 172 Lq~dl~~~~eq~e 184 (432)
++.++..+.++..
T Consensus 170 ~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 170 LQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444433333
No 112
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=42.31 E-value=45 Score=28.93 Aligned_cols=128 Identities=21% Similarity=0.277 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhhHHHHhhh-hhhhHHHHHHhHHhHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh----
Q 013998 234 ISALEDELEKTRSSVENLQSK-LRMGLEIENHLKKSVRELEKK-IIHSDKFISNAIAELRLCHSQLRVHVVNSLEE---- 307 (432)
Q Consensus 234 isaLEee~e~lr~si~~LQsk-LR~glEIEnHLkk~~r~lEkk-q~~~d~~i~Ngis~L~~~h~~~R~~Im~lL~e---- 307 (432)
+..+++++..+.+.++.|++. +|.--+++|..++-.+..+.. .-....|+..=|.-+ +.+-..+.-
T Consensus 13 ~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~--------D~l~~a~~~~~~~ 84 (165)
T PF01025_consen 13 IEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVL--------DNLERALEAAKSN 84 (165)
T ss_dssp HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--------HHHHHHHCC-SHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhcc
Confidence 445555566666666666665 355668999888887766533 334445544433222 222222221
Q ss_pred -ccchhhhhHHHHHhhh-hccccccccCccccccc-ccccccccccccccccCCCCCcccCCCCCCc
Q 013998 308 -GRSHIKSISDVIEEKT-QHCDDVIRGQNTGTYQR-ETKLDEFECRDVHINNDADTNLVSQRNDPAY 371 (432)
Q Consensus 308 -~~s~iks~~~~i~ek~-~~~~n~~~e~n~~~p~~-~~~~~e~ecrDvHvs~d~~~~~~~k~~~p~~ 371 (432)
....+..-+.++.+++ ++..+. ++-...|.| ...+.--++-++--+++..|+++-.---|++
T Consensus 85 ~~~~~~~~g~~~~~~~l~~~L~~~--Gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~GY 149 (165)
T PF01025_consen 85 EEEESLLEGLEMILKQLEDILEKN--GVEEIEPVGEPFDPNLHEAVETVPDPDKEPGTIVEVVRPGY 149 (165)
T ss_dssp CTCHHHHHHHHHHHHHHHHHHHTT--TEEEE--TSSB--TTTEEEEEEECSSSS-CTBEEEECC-EE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHC--CCEecCCCCCCCCHHHheeheecCcCCCCcCeEEEEEecCE
Confidence 1122333344444444 222211 111122332 2344444555555555556777766666665
No 113
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=42.02 E-value=75 Score=28.81 Aligned_cols=66 Identities=15% Similarity=0.347 Sum_probs=39.4
Q ss_pred hhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHH
Q 013998 125 AERDNSVMEAEKAKEKEELMSQKFNEFQTRLE----ELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFY 194 (432)
Q Consensus 125 AERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~----E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFy 194 (432)
.+||+.|-.-.+...--+.+-+++.+++.... +|+..+..++ ++.+|..-|......+. +.|-+++
T Consensus 37 ~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~-~~~ai~~al~~akakn~---~av~all 106 (155)
T PF06810_consen 37 KEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMK-KDSAIKSALKGAKAKNP---KAVKALL 106 (155)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCCH---HHHHHhc
Confidence 34444444433322333444566777766666 7777777666 68888887777766665 4444443
No 114
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=41.89 E-value=2.3e+02 Score=24.45 Aligned_cols=39 Identities=36% Similarity=0.436 Sum_probs=25.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 013998 57 TAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (432)
Q Consensus 57 tA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL 98 (432)
...+.++++.+..........|..++.+|.+ .|+++..+
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~---~r~~l~~~ 67 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEE---LRSQLQEL 67 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHH---HHHHHHHH
Confidence 3456777888888888888888888888876 56666666
No 115
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=41.59 E-value=7e+02 Score=30.01 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=21.3
Q ss_pred HHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhH
Q 013998 155 LEELSSENIELKKQNATLRFDLEKQEELNESF 186 (432)
Q Consensus 155 ~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~ 186 (432)
++.|...+.+-+++-.+||.|++.++.+...-
T Consensus 399 i~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~ 430 (1200)
T KOG0964|consen 399 IEKLKRGINDTKEQENILQKEIEDLESELKEK 430 (1200)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44555566667777788888887776665533
No 116
>PRK09343 prefoldin subunit beta; Provisional
Probab=41.49 E-value=2.4e+02 Score=24.50 Aligned_cols=94 Identities=21% Similarity=0.315 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHH
Q 013998 64 IEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEEL 143 (432)
Q Consensus 64 IE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~ 143 (432)
++.+++++..+...-..|.-++.|.-....-|..| +.+-+.|- .|...|--.|.+=+.
T Consensus 16 ~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L-----------~~d~~VYk-~VG~vlv~qd~~e~~---------- 73 (121)
T PRK09343 16 LQQLQQQLERLLQQKSQIDLELREINKALEELEKL-----------PDDTPIYK-IVGNLLVKVDKTKVE---------- 73 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCcchhHH-HhhHHHhhccHHHHH----------
Confidence 44555566666666666666666666655555544 33444554 366667655543221
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhH
Q 013998 144 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (432)
Q Consensus 144 m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e 184 (432)
.++++|++-++..+.........|+..+..+..+..
T Consensus 74 -----~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 74 -----KELKERKELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344444444444444444455555555544443
No 117
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=41.46 E-value=2.3e+02 Score=26.34 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=49.6
Q ss_pred hHHHHhhhhhhhH-HHHHHhHHhHHHHHHhhhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhhccchhhh
Q 013998 247 SVENLQSKLRMGL-EIENHLKKSVRELEKKIIHSDKFISNAIAEL-----------RLCHSQLRVHVVNSLEEGRSHIKS 314 (432)
Q Consensus 247 si~~LQskLR~gl-EIEnHLkk~~r~lEkkq~~~d~~i~Ngis~L-----------~~~h~~~R~~Im~lL~e~~s~iks 314 (432)
.+-+|+.|-|-|- .....++..+..+..++.-++.|.++|+... -..|-..=.+.+..+.++..+|..
T Consensus 124 e~~Kl~KK~~kgk~~~~~~~~~~~~~v~~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~ 203 (219)
T PF08397_consen 124 ELKKLRKKSRKGKDDQKYELKEALQDVTERQSELEEFEKQSLREALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQE 203 (219)
T ss_dssp HHHHHHCCCCCCTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666432 1234456668889999999999999998653 233444445677777777777777
Q ss_pred hHHHHHhh
Q 013998 315 ISDVIEEK 322 (432)
Q Consensus 315 ~~~~i~ek 322 (432)
.++..++-
T Consensus 204 ~~~~w~~~ 211 (219)
T PF08397_consen 204 KLDDWQEL 211 (219)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 76666553
No 118
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=41.39 E-value=1.2e+02 Score=24.44 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHhhHHHHh
Q 013998 233 YISALEDELEKTRSSVENLQ 252 (432)
Q Consensus 233 yisaLEee~e~lr~si~~LQ 252 (432)
....|+.+++.|+..++.++
T Consensus 40 rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 40 RNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555555444
No 119
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=41.38 E-value=2.6e+02 Score=25.00 Aligned_cols=22 Identities=27% Similarity=0.182 Sum_probs=15.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHh
Q 013998 53 HFQRTAGLEQEIEILKQKIAAC 74 (432)
Q Consensus 53 ~~QRtA~LEQeIE~Lkkkl~~c 74 (432)
|--|-|+|+..||.+|---+..
T Consensus 14 l~n~La~Le~slE~~K~S~~eL 35 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGEL 35 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
Confidence 3457788888888888744433
No 120
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=41.10 E-value=3.9e+02 Score=26.84 Aligned_cols=40 Identities=30% Similarity=0.407 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHhhhhhcchHHHHHH-------HHHHHH-HHHHH
Q 013998 59 GLEQEIEILKQKIAACARENSNLQEELSE-------AYRIKG-QLADL 98 (432)
Q Consensus 59 ~LEQeIE~Lkkkl~~c~rEn~nLQEELsE-------AYRiK~-qLadL 98 (432)
.++..+..|+.++..+.+.-.+.|+||+= -|-+|+ |+|.|
T Consensus 78 k~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L 125 (258)
T PF15397_consen 78 KEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANL 125 (258)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 34566777778888888888899999873 466777 77766
No 121
>PF01017 STAT_alpha: STAT protein, all-alpha domain; InterPro: IPR013800 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the all-alpha helical domain, which consists of four long helices arranged in a bundle with a left-handed twist (coiled-coil), which in turn forms a right-handed superhelix.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 3CWG_B 1BG1_A 1Y1U_B.
Probab=40.54 E-value=2.4e+02 Score=25.79 Aligned_cols=95 Identities=22% Similarity=0.346 Sum_probs=50.4
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHH-HHHHHHHHHHhhH-HHHHHHHHhhhhHHHHHhhhhhhhH
Q 013998 55 QRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQ-LADLHAAEVIKNM-EAEKQVKFFQGCMAAAFAERDNSVM 132 (432)
Q Consensus 55 QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~q-LadLh~ae~~KN~-e~EkqVkFfQs~VA~AFAERD~slm 132 (432)
.|-..+++.+..|+.+.-..-.++..|++ +-|.|-++++ |-.+...+ .|. .....++-.+..+.+-+.
T Consensus 2 ~~~~ei~~~l~~l~~~vq~~e~~~k~Le~-~QE~f~~~~q~lq~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------- 71 (182)
T PF01017_consen 2 EKQQEIEQKLQDLRNRVQETENDIKSLED-LQEEFDFQYQTLQQLQETE--QNSNALKEQLKQEQQQLQQMLN------- 71 (182)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCTTTTT----STTTHHHHHCCCCCHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccc--chhhhhHHHHHHHHHHHHHHHH-------
Confidence 34556777777787777777777777754 5688888885 22221111 111 112223322222222222
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 013998 133 EAEKAKEKEELMSQKFNEFQTRLEELSSEN 162 (432)
Q Consensus 133 EaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~ 162 (432)
....+...+..++.+.=..++.+++.+
T Consensus 72 ---~L~~~R~~lv~~l~~~~~~~~~lq~~l 98 (182)
T PF01017_consen 72 ---ELDQKRKELVSKLKETLNCLEQLQSQL 98 (182)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444556667777777777776554
No 122
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=40.40 E-value=4.8e+02 Score=27.74 Aligned_cols=121 Identities=25% Similarity=0.206 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHH
Q 013998 64 IEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEEL 143 (432)
Q Consensus 64 IE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~ 143 (432)
.--||.|-..--++--|+| +|+.+--.++.|-+|-+-----|+ ++|= -..|++ =.|-|+.||--+-
T Consensus 48 ~kvlq~k~~t~~kek~~~Q-~l~kt~larsKLeelCRelQr~nk----~~ke--E~~~q~-------k~eEerRkea~~~ 113 (391)
T KOG1850|consen 48 DKVLQVKDLTEKKEKRNNQ-ILLKTELARSKLEELCRELQRANK----QTKE--EACAQM-------KKEEERRKEAVEQ 113 (391)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----HHHH--HHHHHH-------HHHHHHHHHHHHH
Confidence 3445555555666677888 888888888888877442111111 1110 011111 0233333433333
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhh
Q 013998 144 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQ 198 (432)
Q Consensus 144 m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~ 198 (432)
.---+++++.-+.+--+.++...+-|-.|.-.+..+-+|-+.--++|+|-++--.
T Consensus 114 fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke 168 (391)
T KOG1850|consen 114 FQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE 168 (391)
T ss_pred HHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567788888888888888888888888888888888888888887766443
No 123
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=40.32 E-value=3e+02 Score=26.37 Aligned_cols=78 Identities=13% Similarity=0.245 Sum_probs=54.6
Q ss_pred ccccccccccCcch--hhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013998 217 LDSAEMWSFNDTST--SKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCH 294 (432)
Q Consensus 217 ~ds~~~WSfn~tSt--skyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i~Ngis~L~~~h 294 (432)
.=+...|..++..+ |.|++.|=.+.......++.+-...++--|+.+-|=..+=. ..-..+-.|.|.++|+-
T Consensus 75 ~Ia~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~------~~~~~Lveg~s~vkKCs 148 (234)
T PF10474_consen 75 SIANVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIF------FAFETLVEGYSRVKKCS 148 (234)
T ss_pred HHHHcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH------HHHHHHHHHHHhccCCC
Confidence 34556799996554 99999999999999999988877777777766654433221 22334466777777777
Q ss_pred HHHHHH
Q 013998 295 SQLRVH 300 (432)
Q Consensus 295 ~~~R~~ 300 (432)
..-|+-
T Consensus 149 ~eGRal 154 (234)
T PF10474_consen 149 NEGRAL 154 (234)
T ss_pred hhhHHH
Confidence 666653
No 124
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=40.04 E-value=2.7e+02 Score=24.71 Aligned_cols=77 Identities=27% Similarity=0.289 Sum_probs=52.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcch-HHHHHHH
Q 013998 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNL-QEELSEA 88 (432)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaG-pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nL-QEELsEA 88 (432)
+...+...|.+|+.+-.+|.+++-.|--+-+. -+.+ .|-=+-..++.|+++|+.|..+|...-...... .+|...+
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~--t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~ 150 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEP--TNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKL 150 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 46677888999999999999999888876555 1111 112245677889999999999998876643332 3344433
Q ss_pred H
Q 013998 89 Y 89 (432)
Q Consensus 89 Y 89 (432)
.
T Consensus 151 ~ 151 (169)
T PF07106_consen 151 E 151 (169)
T ss_pred H
Confidence 3
No 125
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=39.96 E-value=4.4e+02 Score=27.22 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHHHHHhhHHHHhh
Q 013998 230 TSKYISALEDELEKTRSSVENLQS 253 (432)
Q Consensus 230 tskyisaLEee~e~lr~si~~LQs 253 (432)
.+.+|..|-.|+..||..+..-|.
T Consensus 227 ~~shI~~Lr~EV~RLR~qL~~sq~ 250 (310)
T PF09755_consen 227 LSSHIRSLRQEVSRLRQQLAASQQ 250 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466899999999999988876654
No 126
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=39.82 E-value=27 Score=34.23 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=19.9
Q ss_pred chhhhHHHHHHHHHHHHhhHHHH
Q 013998 229 STSKYISALEDELEKTRSSVENL 251 (432)
Q Consensus 229 StskyisaLEee~e~lr~si~~L 251 (432)
...+=|+|||.||-.||+.|.++
T Consensus 119 ~AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 119 AALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567999999999999999875
No 127
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=39.62 E-value=1.9e+02 Score=22.83 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=25.3
Q ss_pred CcchhhhHHHHHHHHHHHHhhHHHHhhhhhhhH
Q 013998 227 DTSTSKYISALEDELEKTRSSVENLQSKLRMGL 259 (432)
Q Consensus 227 ~tStskyisaLEee~e~lr~si~~LQskLR~gl 259 (432)
..+....+..|+..+.++...++..+..|.-|-
T Consensus 74 ~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~ 106 (127)
T smart00502 74 LKVLEQQLESLTQKQEKLSHAINFTEEALNSGD 106 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345566788888888888888888888887653
No 128
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=39.33 E-value=3.9e+02 Score=26.43 Aligned_cols=131 Identities=18% Similarity=0.309 Sum_probs=66.1
Q ss_pred CcchhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHH-------HHhhhhhHHHHHHHHHHHH---HHHHH
Q 013998 227 DTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVREL-------EKKIIHSDKFISNAIAELR---LCHSQ 296 (432)
Q Consensus 227 ~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~l-------Ekkq~~~d~~i~Ngis~L~---~~h~~ 296 (432)
+.+|.+=+++|.-|.+.++..+..|-..|.=-.+...+|.+.+-.| |+.-.-+-.-+...++.++ +-|+.
T Consensus 84 ~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~ 163 (239)
T COG1579 84 AVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSS 163 (239)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666655555555555444333 3332233333444444443 35566
Q ss_pred HHHHHHHhhhhccchhhhhHHHHHhhh-hccccccccCcccccccccccccccccccccccCCC-CCcccCCCCCCcchh
Q 013998 297 LRVHVVNSLEEGRSHIKSISDVIEEKT-QHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDAD-TNLVSQRNDPAYCDI 374 (432)
Q Consensus 297 ~R~~Im~lL~e~~s~iks~~~~i~ek~-~~~~n~~~e~n~~~p~~~~~~~e~ecrDvHvs~d~~-~~~~~k~~~p~~~~~ 374 (432)
.|+++..=|..+ +-+.. +++ .- - --.+........|..-||-..+. -+.+.+.|.+..|..
T Consensus 164 ~~~~L~~~l~~e---ll~~y----eri~~~-------~---kg~gvvpl~g~~C~GC~m~l~~~~~~~V~~~d~iv~CP~ 226 (239)
T COG1579 164 KREELKEKLDPE---LLSEY----ERIRKN-------K---KGVGVVPLEGRVCGGCHMKLPSQTLSKVRKKDEIVFCPY 226 (239)
T ss_pred HHHHHHHhcCHH---HHHHH----HHHHhc-------C---CCceEEeecCCcccCCeeeecHHHHHHHhcCCCCccCCc
Confidence 666655444332 22221 222 11 1 01344455667788888754333 344556666666654
No 129
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=39.04 E-value=2.8e+02 Score=24.63 Aligned_cols=96 Identities=25% Similarity=0.262 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHH
Q 013998 62 QEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKE 141 (432)
Q Consensus 62 QeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~E 141 (432)
+-++.|+..|..+-.|...|+++++..=+-|..+++=--.-...|.++ ...+..-
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~-------------------------~~~~~~~ 70 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL-------------------------RALKKEV 70 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHH
Confidence 457788888888888888888888877777777663211111111111 1122222
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHh
Q 013998 142 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL 182 (432)
Q Consensus 142 e~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq 182 (432)
..+-+++.+++.|...+=--+-+--+....|+.|+..+|+-
T Consensus 71 ~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 71 EELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 33445666666665544333344456677788888777654
No 130
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=38.79 E-value=90 Score=25.53 Aligned_cols=79 Identities=29% Similarity=0.435 Sum_probs=61.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-hh------------c------------------CCch-----HHHhhHHHH
Q 013998 11 ESEALMARIQQLEHERDELRKDIEQLCM-QQ------------A------------------GPSY-----LAVATRMHF 54 (432)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCM-QQ------------a------------------Gpgy-----l~vATRM~~ 54 (432)
..+.+.+++..|+...+++..=++.|.- +. + |.|| +.=|...+.
T Consensus 4 ~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l~ 83 (120)
T PF02996_consen 4 ELENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFLK 83 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHHH
Confidence 3567889999999988888888888774 43 1 2222 234778888
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 013998 55 QRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (432)
Q Consensus 55 QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY 89 (432)
.|...|+..++.+.+++......-..++..+++.|
T Consensus 84 ~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 84 KRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999888888888888877766
No 131
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=38.72 E-value=23 Score=38.77 Aligned_cols=43 Identities=28% Similarity=0.313 Sum_probs=33.4
Q ss_pred hhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHH
Q 013998 126 ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180 (432)
Q Consensus 126 ERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~ 180 (432)
|||.+.||+|+|. .+-|+-.||-.-..|+.+.-.||+..++++
T Consensus 33 E~dr~~WElERaE------------lqariAfLqgErk~qenlk~dl~rR~kmlE 75 (577)
T KOG0642|consen 33 ERDRARWELERAE------------LQARIAFLQGERKGQENLKMDLVRRIKMLE 75 (577)
T ss_pred hhhhhheehhhhh------------HHHHHHHHhcchhhhHHHHHHHHHHHhccc
Confidence 8999999999986 556777777777777777777777766664
No 132
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=38.66 E-value=1.2e+02 Score=23.02 Aligned_cols=37 Identities=35% Similarity=0.478 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHh
Q 013998 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL 182 (432)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq 182 (432)
+.+.+++.++..+++....++..+..|...+..+..+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666666666666666666666665555555444
No 133
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.61 E-value=2.2e+02 Score=25.74 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhH
Q 013998 139 EKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDL 176 (432)
Q Consensus 139 E~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl 176 (432)
+.......++.+....++..+.+++..|.+...|+.++
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444456666677777777667766666666665543
No 134
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=38.52 E-value=84 Score=23.56 Aligned_cols=42 Identities=14% Similarity=0.340 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHH
Q 013998 91 IKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVME 133 (432)
Q Consensus 91 iK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmE 133 (432)
++..+++.|...+ -..|+..=+.||.|-+.+.|...-.+++.
T Consensus 5 ~~~~~~~~y~~~f-t~~El~~i~~FY~Sp~Gqk~~~~~~~~~~ 46 (64)
T PF09832_consen 5 MIDQMAPIYAEHF-TEEELDAILAFYESPLGQKIVAKEPALMQ 46 (64)
T ss_dssp HHHHHHHHHHHHS--HHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CHHHHHHHHHHHCCHHhHHHHHHhHHHHH
Confidence 4555666665544 45688899999999999999887776665
No 135
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=37.72 E-value=2e+02 Score=25.96 Aligned_cols=65 Identities=26% Similarity=0.342 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchH
Q 013998 16 MARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQ 82 (432)
Q Consensus 16 ~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQ 82 (432)
..|+-.+-++-..+++.++.+=-|-.+.. ..+.+......+.+..||++|+++|.....|...|+
T Consensus 117 I~r~~~li~~l~~~~~~~~~~~kq~~~~~--~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~Lk 181 (192)
T PF05529_consen 117 IRRVHSLIKELIKLEEKLEALKKQAESAS--EAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALK 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444433321 123333556677777888888887777555544444
No 136
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=37.60 E-value=66 Score=28.32 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=28.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 013998 134 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKK 167 (432)
Q Consensus 134 aEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~ 167 (432)
+.|.+.+|+...+.+..++.++++++..+.+|+.
T Consensus 100 ~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 100 ARKEAKKEEELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677888889999999999999998887763
No 137
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.37 E-value=1.1e+02 Score=30.76 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHH
Q 013998 17 ARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLA 96 (432)
Q Consensus 17 aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLa 96 (432)
+++-+-..|-.-|-+|.++-=-+-. -+..+.|+=+. |-++++|||-.+|.+|...++-++-|.+|+. +.|.-+-
T Consensus 51 r~lS~~~~e~e~l~~~l~etene~~--~~neL~~ek~~-~q~~ieqeik~~q~elEvl~~n~Q~lkeE~d---d~keiIs 124 (246)
T KOG4657|consen 51 RALSQSQVELENLKADLRETENELV--KVNELKTEKEA-RQMGIEQEIKATQSELEVLRRNLQLLKEEKD---DSKEIIS 124 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHH
Confidence 3555555555566666665332211 23335555554 4468999999999999999999999999998 4444444
Q ss_pred HH
Q 013998 97 DL 98 (432)
Q Consensus 97 dL 98 (432)
.-
T Consensus 125 ~k 126 (246)
T KOG4657|consen 125 QK 126 (246)
T ss_pred HH
Confidence 33
No 138
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=37.36 E-value=2.8e+02 Score=24.07 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=48.8
Q ss_pred HHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhH
Q 013998 98 LHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDL 176 (432)
Q Consensus 98 Lh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl 176 (432)
+|+...-.-..+..++.=++.-++..=+++|.+--+.+..+ .....+=..++..+.++++.+.++..+|..|-..+
T Consensus 53 ~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e---~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 53 KHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESE---ASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36655556666777777788888888888887766654333 33334444566666666666777777776664433
No 139
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=37.33 E-value=2e+02 Score=32.55 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHh
Q 013998 146 QKFNEFQTRLEELSSENIELKK 167 (432)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qK~ 167 (432)
..+.++++|+..|..++.-.+.
T Consensus 300 ~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 300 GALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666666666665544444
No 140
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.18 E-value=1.6e+02 Score=28.87 Aligned_cols=82 Identities=15% Similarity=0.174 Sum_probs=52.7
Q ss_pred hhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 013998 230 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGR 309 (432)
Q Consensus 230 tskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i~Ngis~L~~~h~~~R~~Im~lL~e~~ 309 (432)
.+..|+.|..+++.+.+.++.|++..+=| ++.......++. +..+ -+-++||...=..||++|+.|.
T Consensus 127 l~~~Id~L~~QiE~~E~E~E~L~~~~kKk----k~~~~~~~r~~~----l~~~-----ierhk~Hi~kLE~lLR~L~N~~ 193 (233)
T PF04065_consen 127 LKDSIDELNRQIEQLEAEIESLSSQKKKK----KKDSTKQERIEE----LESR-----IERHKFHIEKLELLLRLLDNDE 193 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC----ccCccchhHHHH----HHHH-----HHHHHHHHHHHHHHHHHHHcCC
Confidence 46689999999999999999999864432 111111111111 1111 1235677777777899999998
Q ss_pred chhhhhHHHHHhhhhc
Q 013998 310 SHIKSISDVIEEKTQH 325 (432)
Q Consensus 310 s~iks~~~~i~ek~~~ 325 (432)
..-.. |+.|.|-|..
T Consensus 194 l~~e~-V~~ikediey 208 (233)
T PF04065_consen 194 LDPEQ-VEDIKEDIEY 208 (233)
T ss_pred CCHHH-HHHHHHHHHH
Confidence 87744 4568888844
No 141
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=36.16 E-value=1.2e+02 Score=25.27 Aligned_cols=16 Identities=25% Similarity=0.352 Sum_probs=12.1
Q ss_pred hcccccchhhhhcccc
Q 013998 204 LETSWEDKCACLLLDS 219 (432)
Q Consensus 204 ~~~s~~~Kc~~Ll~ds 219 (432)
.++..+.+|+||=-|.
T Consensus 55 g~~~~~~~~gVLSEDa 70 (90)
T PF14131_consen 55 GDLPTDGKCGVLSEDA 70 (90)
T ss_pred CCCCCCcccCccCchH
Confidence 4577889999986554
No 142
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=35.74 E-value=6.8e+02 Score=28.14 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=39.3
Q ss_pred HHhhcC--CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 013998 37 CMQQAG--PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (432)
Q Consensus 37 CMQQaG--pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL 98 (432)
|...+| |..|.-|..++......++.=|+.|..+....-.+...+...+.++=+.+..|...
T Consensus 493 iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~ 556 (782)
T PRK00409 493 IAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEK 556 (782)
T ss_pred HHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667 55667777888888778888777777765555555555555555555555554433
No 143
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=35.50 E-value=75 Score=26.36 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=39.2
Q ss_pred cCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 013998 41 AGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (432)
Q Consensus 41 aGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsE 87 (432)
++|..+..-.-+-+..+..+.+.++.|+..|...-.+|..|.+++.+
T Consensus 59 ~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 59 VWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred CCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677777778888999999999999999999999999875
No 144
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=35.26 E-value=1.1e+02 Score=23.96 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 013998 58 AGLEQEIEILKQKIAACARENSNLQEELSE 87 (432)
Q Consensus 58 A~LEQeIE~Lkkkl~~c~rEn~nLQEELsE 87 (432)
..+..++.++++++.....+|..|+.|.+.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888999888888999999988764
No 145
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=35.19 E-value=1.6e+02 Score=29.93 Aligned_cols=50 Identities=30% Similarity=0.514 Sum_probs=37.2
Q ss_pred hhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHH
Q 013998 230 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFI 283 (432)
Q Consensus 230 tskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i 283 (432)
...|++.|+++++.+.+.+++|..+|.-.= +.+++...+++....+++-+
T Consensus 240 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~ 289 (406)
T PF02388_consen 240 GKEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRI 289 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHH
Confidence 467999999999999999999998764432 66666666666665555443
No 146
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.17 E-value=9.2e+02 Score=29.47 Aligned_cols=119 Identities=19% Similarity=0.275 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhhhhcchHHHHHHHH---HHHHHHHHHH----HHHHHhhHHHHHHHHHhhhhHHHH-----Hhhh----
Q 013998 64 IEILKQKIAACARENSNLQEELSEAY---RIKGQLADLH----AAEVIKNMEAEKQVKFFQGCMAAA-----FAER---- 127 (432)
Q Consensus 64 IE~Lkkkl~~c~rEn~nLQEELsEAY---RiK~qLadLh----~ae~~KN~e~EkqVkFfQs~VA~A-----FAER---- 127 (432)
...++++++..-+|-.++||+=+.-- +++.++..++ ++--+|-..+=+|+.++-.-+|.. -+.|
T Consensus 860 l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k 939 (1293)
T KOG0996|consen 860 LKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAK 939 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHH
Confidence 34555666666666667765544311 2233333332 244445555556666664433322 1122
Q ss_pred -hhhhHHHHH-----------hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHh
Q 013998 128 -DNSVMEAEK-----------AKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL 182 (432)
Q Consensus 128 -D~slmEaEK-----------aKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq 182 (432)
++.+-+.|+ ..+.....-.+..+.+.++.|.+..+.+.+..-..+-.++...+..
T Consensus 940 ~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~ 1006 (1293)
T KOG0996|consen 940 AQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKS 1006 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222 2222222233444555555555555555555555555555554443
No 147
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=35.11 E-value=1e+02 Score=24.93 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=31.6
Q ss_pred HHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 013998 46 LAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (432)
Q Consensus 46 l~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsE 87 (432)
.++++-+....+..+..+++.++++......||.+|+=|.+.
T Consensus 26 ~a~~~v~~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 26 SALGVVYSRHQSRQLFYELQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555557777788999999999999999999877653
No 148
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=34.80 E-value=5.3e+02 Score=26.60 Aligned_cols=144 Identities=18% Similarity=0.231 Sum_probs=80.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 013998 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAG--PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (432)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaG--pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEA 88 (432)
.+-.|..-|..|.+.-.|++.||.-|=|+.|- +|...+.+|-++..-..|-..+|++++|....-+|=
T Consensus 80 ~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~---------- 149 (319)
T PF09789_consen 80 QNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDL---------- 149 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 35667778888888889999999888874432 333446677666555666666888888665544443
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 013998 89 YRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQ 168 (432)
Q Consensus 89 YRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~ 168 (432)
++.+.+. .|+-.+--||+..|.+- -..++.-+++=..|+-...+-| -=
T Consensus 150 ---qs~lDEk--------eEl~~ERD~yk~K~~RL-----------------N~ELn~~L~g~~~rivDIDaLi----~E 197 (319)
T PF09789_consen 150 ---QSLLDEK--------EELVTERDAYKCKAHRL-----------------NHELNYILNGDENRIVDIDALI----ME 197 (319)
T ss_pred ---HHHHHHH--------HHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCCCCcccHHHHH----HH
Confidence 4444443 33334444444444332 1112222333333433222222 33
Q ss_pred hHHHhhhHHHHHHhhHhHHHHHHHHHHH
Q 013998 169 NATLRFDLEKQEELNESFKEVINKFYEI 196 (432)
Q Consensus 169 n~~Lq~dl~~~~eq~e~~~kVi~KFyei 196 (432)
|.-|+-.+..+.+...+.+--|+||..+
T Consensus 198 NRyL~erl~q~qeE~~l~k~~i~KYK~~ 225 (319)
T PF09789_consen 198 NRYLKERLKQLQEEKELLKQTINKYKSA 225 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666666777777654
No 149
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=34.41 E-value=6.3e+02 Score=27.34 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=31.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhH
Q 013998 133 EAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (432)
Q Consensus 133 EaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e 184 (432)
+.+-++.+++.+.++++++++|+..+.....+.. .|+++....+..-+
T Consensus 346 ~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~----~L~Re~~~~~~~Y~ 393 (754)
T TIGR01005 346 QADAAQARESQLVSDVNQLKAASAQAGEQQVDLD----ALQRDAAAKRQLYE 393 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHH----HHHHHHHHHHHHHH
Confidence 4566777888889999999999887755443332 45555555544444
No 150
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=34.21 E-value=1.8e+02 Score=25.57 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=27.1
Q ss_pred cccCcchhhhHHHHHHHHHHHHhhHHHHhhhhh
Q 013998 224 SFNDTSTSKYISALEDELEKTRSSVENLQSKLR 256 (432)
Q Consensus 224 Sfn~tStskyisaLEee~e~lr~si~~LQskLR 256 (432)
+||=.+.++..++||..+.....+|+-||.-++
T Consensus 19 ~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~ 51 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQLAANLHQLELLQEEIE 51 (160)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567888999999999999999999987554
No 151
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=34.15 E-value=4.6e+02 Score=25.70 Aligned_cols=33 Identities=39% Similarity=0.434 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHH
Q 013998 149 NEFQTRLEELSSENIELKKQNATLRFDLEKQEE 181 (432)
Q Consensus 149 ~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~e 181 (432)
.++++.+.++++.+.+++++|..|-.||.....
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~ 34 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQA 34 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567889999999999999999999999988743
No 152
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=34.05 E-value=80 Score=27.41 Aligned_cols=38 Identities=26% Similarity=0.239 Sum_probs=30.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHH
Q 013998 54 FQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRI 91 (432)
Q Consensus 54 ~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRi 91 (432)
.+.+..|-.+++.||+.+....-||..|+-|....++.
T Consensus 14 e~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 14 EQQLGQLLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677778899999999999999999887765543
No 153
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=34.03 E-value=8.2e+02 Score=28.58 Aligned_cols=85 Identities=19% Similarity=0.301 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHH------HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 013998 236 ALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDK------FISNAIAELRLCHSQLRVHVVNSLEEGR 309 (432)
Q Consensus 236 aLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~------~i~Ngis~L~~~h~~~R~~Im~lL~e~~ 309 (432)
+|+++++.+...+..++... =++|.+|+..-..++....-+.. -.++-+..|+..+...+..+-..+++..
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~---~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 680 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQ---EELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERK 680 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777776666553 46777776655555443332222 2345677778888888888888888888
Q ss_pred chhhhhHHHHHhhh
Q 013998 310 SHIKSISDVIEEKT 323 (432)
Q Consensus 310 s~iks~~~~i~ek~ 323 (432)
..+..-++.++..+
T Consensus 681 ~~~~~~l~~l~~~l 694 (1201)
T PF12128_consen 681 EQIEEQLNELEEEL 694 (1201)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887777
No 154
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=33.99 E-value=3.5e+02 Score=26.25 Aligned_cols=108 Identities=19% Similarity=0.329 Sum_probs=66.8
Q ss_pred HHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhh
Q 013998 121 AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQS 200 (432)
Q Consensus 121 A~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~ 200 (432)
.+.|+.-...=||.-+.| .++++++..++..+.....- +..-..+.+..+.+.|.+++ |--++
T Consensus 85 gTdfS~~~~~dwEevrLk-------rELa~Le~~l~~~~~~~~~~---~~~~~~~~~lvk~e~EqLL~-----YK~~q-- 147 (195)
T PF12761_consen 85 GTDFSATEGTDWEEVRLK-------RELAELEEKLSKVEQAAESR---RSDTDSKPALVKREFEQLLD-----YKERQ-- 147 (195)
T ss_pred CCCCCCCCCCchHHHHHH-------HHHHHHHHHHHHHHHHHHhc---ccCCcchHHHHHHHHHHHHH-----HHHHH--
Confidence 567777767778877777 89999999999887766442 22233445555566553333 22222
Q ss_pred hhhhcccccchhhhhcccccccccccCcchhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHH
Q 013998 201 LEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEK 274 (432)
Q Consensus 201 ~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEk 274 (432)
|.+... +..+.+.=+.++.+.++.++..|+-| |.||..+-.+|++
T Consensus 148 ---------------l~~~~~----~~~~~~~~l~~v~~Dl~~ie~QV~~L----------e~~L~~k~~eL~~ 192 (195)
T PF12761_consen 148 ---------------LRELEE----GRSKSGKNLKSVREDLDTIEEQVDGL----------ESHLSSKKQELQQ 192 (195)
T ss_pred ---------------HHhhhc----cCCCCCCCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 111111 22334445677778888888777755 5788888888775
No 155
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=33.88 E-value=7.4e+02 Score=28.02 Aligned_cols=227 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHH
Q 013998 43 PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAA 122 (432)
Q Consensus 43 pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~ 122 (432)
|..-+.+--.-.++- -+.|++.|+..+.-...+=..+..-=....+++-.++++ +.---...++-|-|-|...++
T Consensus 104 pll~sa~~~l~k~~~--~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~---~~~~~~~ie~~a~~~e~~~~q 178 (629)
T KOG0963|consen 104 PLLASAAELLNKQQK--ASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKL---EQLLEIFIENAANETEEKLEQ 178 (629)
T ss_pred hHHHHHHHHhhhhhh--hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhh
Q 013998 123 AFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLE 202 (432)
Q Consensus 123 AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e 202 (432)
-+|+|-.-|.+ .-...+++++++++.+......+.+-|..+..++..-+
T Consensus 179 ~~~e~e~~L~~-------------~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~d------------------ 227 (629)
T KOG0963|consen 179 EWAEREAGLKD-------------EEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYD------------------ 227 (629)
T ss_pred HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh------------------
Q ss_pred hhcccccchhhhhcccccccccccCcchhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHH
Q 013998 203 VLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKF 282 (432)
Q Consensus 203 ~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~ 282 (432)
-....-..=-+.+|.+-++ +-.-|-.||.|++.|+....+--+..+-| ++-.+.+..-..+.
T Consensus 228 ee~~~k~aev~lim~eLe~--------aq~ri~~lE~e~e~L~~ql~~~N~~~~~~---------~~~~i~~~~~~L~~- 289 (629)
T KOG0963|consen 228 EEVAAKAAEVSLIMTELED--------AQQRIVFLEREVEQLREQLAKANSSKKLA---------KIDDIDALGSVLNQ- 289 (629)
T ss_pred hhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhhhhhhc---------cCCchHHHHHHHhH-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHhhh
Q 013998 283 ISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKT 323 (432)
Q Consensus 283 i~Ngis~L~~~h~~~R~~Im~lL~e~~s~iks~~~~i~ek~ 323 (432)
..--|+.|-.-.-+++.-..+.++.-..+|+++.+.+..|.
T Consensus 290 kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~ 330 (629)
T KOG0963|consen 290 KDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKI 330 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 156
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=33.75 E-value=2.8e+02 Score=25.46 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=42.4
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 013998 50 TRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (432)
Q Consensus 50 TRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL 98 (432)
..++..+.+.|++.++...+++.++..-=...+.++.+|.|.+..+++|
T Consensus 76 v~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~a~r~~eKf~eL 124 (152)
T PF07321_consen 76 VASLREREAELEQQLAEAEEQLEQERQALEEARKQLQQARRQQEKFAEL 124 (152)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457778899999999999999999888888899999999999887766
No 157
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=32.85 E-value=9.2e+02 Score=28.80 Aligned_cols=143 Identities=22% Similarity=0.276 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHh----hhhhHHHHHHHHHHHHHhh---hhhcchHHH
Q 013998 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQR----TAGLEQEIEILKQKIAACA---RENSNLQEE 84 (432)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QR----tA~LEQeIE~Lkkkl~~c~---rEn~nLQEE 84 (432)
.|++-....+||++||++--|+-.| |+- --.-+-..|| .|.+++.|+-||.++.+.+ ++......|
T Consensus 346 ~egfddk~~eLEKkrd~al~dvr~i--~e~-----k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kne 418 (1265)
T KOG0976|consen 346 AEGFDDKLNELEKKRDMALMDVRSI--QEK-----KENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNE 418 (1265)
T ss_pred hcchhHHHHHHHHHHHHHHHhHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHH
Confidence 4667778899999999999998765 332 1233444444 4667788999998877664 344445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 013998 85 LSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIE 164 (432)
Q Consensus 85 LsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~ 164 (432)
|++|-- =+|+.|++++ -+++|.--||.- -|-++.+ ++-+ +.+.++.=-|++-+......
T Consensus 419 L~~a~e----kld~mgthl~---mad~Q~s~fk~L------------ke~aegs-rrra-IeQcnemv~rir~l~~sle~ 477 (1265)
T KOG0976|consen 419 LQEALE----KLDLMGTHLS---MADYQLSNFKVL------------KEHAEGS-RRRA-IEQCNEMVDRIRALMDSLEK 477 (1265)
T ss_pred HHHHHH----HHHHHhHHHH---HHHHHHhhHHHH------------HHhhhhh-HhhH-HHHHHHHHHHHHHHhhChhh
Confidence 666642 2466666665 468888888764 3444433 2233 34567888888888888877
Q ss_pred HHhhhHHHhhhHHHHHHhhHhH
Q 013998 165 LKKQNATLRFDLEKQEELNESF 186 (432)
Q Consensus 165 qK~~n~~Lq~dl~~~~eq~e~~ 186 (432)
|+..- -++.+++..|+.-
T Consensus 478 qrKVe----qe~emlKaen~rq 495 (1265)
T KOG0976|consen 478 QRKVE----QEYEMLKAENERQ 495 (1265)
T ss_pred hcchH----HHHHHHHHHHHHH
Confidence 76443 3444455444433
No 158
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.46 E-value=1e+03 Score=29.14 Aligned_cols=155 Identities=23% Similarity=0.217 Sum_probs=78.2
Q ss_pred HHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhh------hccc----ccchhhhhcccccc
Q 013998 152 QTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEV------LETS----WEDKCACLLLDSAE 221 (432)
Q Consensus 152 e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~------~~~s----~~~Kc~~Ll~ds~~ 221 (432)
..|+++++..+.+.++--+++|-.-++ +++-..+...|..-+.++.+-... ..+. --.||++-+--+.
T Consensus 857 ~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~- 934 (1293)
T KOG0996|consen 857 KKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSD- 934 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCc-
Confidence 344555555566666555566633333 566666666666655554432211 1111 1123444333222
Q ss_pred cccccCcchhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013998 222 MWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHV 301 (432)
Q Consensus 222 ~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i~Ngis~L~~~h~~~R~~I 301 (432)
|. -+..-+-++-||.+.+.++.+++.|- |-.+|+...+-+++++- . =-.++|-+++.-|...+..+
T Consensus 935 -~~--i~k~q~~l~~le~~~~~~e~e~~~L~-------e~~~~~~~k~~E~~~~~---~-e~~~~~~E~k~~~~~~k~~~ 1000 (1293)
T KOG0996|consen 935 -RN--IAKAQKKLSELEREIEDTEKELDDLT-------EELKGLEEKAAELEKEY---K-EAEESLKEIKKELRDLKSEL 1000 (1293)
T ss_pred -cc--HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHH
Confidence 11 12334456667777776666666654 33455555555555432 1 23467777777777777666
Q ss_pred HHhhhhccchhhhhHHHHHhhh
Q 013998 302 VNSLEEGRSHIKSISDVIEEKT 323 (432)
Q Consensus 302 m~lL~e~~s~iks~~~~i~ek~ 323 (432)
=++=...-.--...|+ |+.|+
T Consensus 1001 e~i~k~~~~lk~~rId-~~~K~ 1021 (1293)
T KOG0996|consen 1001 ENIKKSENELKAERID-IENKL 1021 (1293)
T ss_pred HHHHHHHHHHHHhhcc-HHHHH
Confidence 5544333333333455 66666
No 159
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=32.37 E-value=4.5e+02 Score=29.44 Aligned_cols=96 Identities=24% Similarity=0.216 Sum_probs=63.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 013998 10 NESEALMARIQQLEHERDELRKDIEQ---LCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELS 86 (432)
Q Consensus 10 ~~~esl~aRI~qLEhERDELrKDIEq---LCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELs 86 (432)
.-.|++..|+++||.|-+.||.|+-+ -|+.--.-+ -.-|++- ..-++|+|.|-.-|++.-..|+-|..-||
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~---~~lr~~~---~e~~~~~e~L~~aL~amqdk~~~LE~sLs 611 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL---QELRKYE---KESEKDTEVLMSALSAMQDKNQHLENSLS 611 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34678899999999999999988743 343211100 0012211 22467899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHH
Q 013998 87 EAYRIKGQLADLHAAEVIKNMEAEK 111 (432)
Q Consensus 87 EAYRiK~qLadLh~ae~~KN~e~Ek 111 (432)
--=|||--|=--.|...-+-+.++.
T Consensus 612 aEtriKldLfsaLg~akrq~ei~~~ 636 (697)
T PF09726_consen 612 AETRIKLDLFSALGDAKRQLEIAQG 636 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999997655444444444333333
No 160
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=32.07 E-value=4.2e+02 Score=24.66 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=39.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhH
Q 013998 54 FQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVM 132 (432)
Q Consensus 54 ~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slm 132 (432)
++.+..++..++.|++++..+...-..|++++..+-.-+.. .+--..-+.+-.+++++++-.+.-++ .|..-|...+
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~-~~eR~~~l~~l~~l~~~~~~l~~el~-~~~~~Dp~~i 137 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREE-SEEREELLEELEELKKELKELKKELE-KYSENDPEKI 137 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCHHHH
Confidence 35555666667777776666666666777777666322111 11112233334444555555554444 4444444433
No 161
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=31.90 E-value=1.5e+02 Score=24.60 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhh
Q 013998 233 YISALEDELEKTRSSVENLQSKL 255 (432)
Q Consensus 233 yisaLEee~e~lr~si~~LQskL 255 (432)
=|+.||.|+-.|...|.-|..+|
T Consensus 62 EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 62 EIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888887777654
No 162
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=31.71 E-value=16 Score=39.41 Aligned_cols=104 Identities=30% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchH------------HHh----hHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Q 013998 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYL------------AVA----TRMHFQRTAGLEQEIEILKQKIAACAREN 78 (432)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl------------~vA----TRM~~QRtA~LEQeIE~Lkkkl~~c~rEn 78 (432)
+...-..|..||+.|+--++.|-.-+++++.+ +.+ +.=...|..-|+.|-..|+.+.++...+.
T Consensus 403 l~~eke~l~~e~~~L~e~~eeL~~~~~~~~~l~~~~~~~~~~~~~l~~El~~~~l~erl~rLe~ENk~Lk~~~e~~~~e~ 482 (713)
T PF05622_consen 403 LEEEKERLQEERDSLRETNEELECSQAQQEQLSQSGEESSSSGDNLSAELNPAELRERLLRLEHENKRLKEKQEESEEEK 482 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccchhhhccchHHHHHHHHHHHHHHHHHHHhccchhhH
Confidence 33334455557777777777765433321111 111 11234577778888888887777664433
Q ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Q 013998 79 -SNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQG 118 (432)
Q Consensus 79 -~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs 118 (432)
.-|+.+|.+|-+.|..|-.-+...-.+..+++.|+.=-|.
T Consensus 483 ~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~ 523 (713)
T PF05622_consen 483 LEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQK 523 (713)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999988888887776666666677666654443
No 163
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=31.59 E-value=3.9e+02 Score=24.07 Aligned_cols=63 Identities=27% Similarity=0.412 Sum_probs=35.5
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHH-----HHHHhhHHHHHHHHHhhhhHHHH
Q 013998 55 QRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHA-----AEVIKNMEAEKQVKFFQGCMAAA 123 (432)
Q Consensus 55 QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~-----ae~~KN~e~EkqVkFfQs~VA~A 123 (432)
-+-.+||.+.+.|-++ |+.-..++=..|=..-..|+++.. .+...-....+.||||..-.-.-
T Consensus 27 ~~l~~LEae~q~L~~k------E~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~l 94 (126)
T PF09403_consen 27 SELNQLEAEYQQLEQK------EEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKEL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3356677777776663 444444444455555556665533 33444455667888887544333
No 164
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.40 E-value=1.1e+02 Score=23.03 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 013998 59 GLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (432)
Q Consensus 59 ~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL 98 (432)
.||.|-+.||..-.....+|..|+.|-.. +++++..|
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~---L~aev~~L 38 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEK---LRAEVQEL 38 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 37888888888888888888888887654 55666555
No 165
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=31.26 E-value=3.4e+02 Score=23.37 Aligned_cols=47 Identities=26% Similarity=0.348 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHh----------------hcCCchHHHhh--HHHHHhhhhhHHHHHHHHHHH
Q 013998 25 ERDELRKDIEQLCMQ----------------QAGPSYLAVAT--RMHFQRTAGLEQEIEILKQKI 71 (432)
Q Consensus 25 ERDELrKDIEqLCMQ----------------QaGpgyl~vAT--RM~~QRtA~LEQeIE~Lkkkl 71 (432)
.-++.-+.|..+.-| .+|+||-.||- |=++.+|...=.+|..+=..+
T Consensus 41 ~i~~~~~~i~~ia~qt~lLalNAsIEAaraGe~G~gF~vvA~eir~LA~~t~~~~~~I~~~i~~i 105 (213)
T PF00015_consen 41 DISEILSLINEIAEQTNLLALNASIEAARAGEAGRGFAVVADEIRKLAEQTSESAKEISEIIEEI 105 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHhhhhhccccchhcccchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhh
Confidence 334455566666654 36799988886 457788877777776654433
No 166
>PRK14147 heat shock protein GrpE; Provisional
Probab=31.13 E-value=4.4e+02 Score=24.52 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhHHHHhhhh-hhhHHHHHHhHHhHHHHHHhhhh
Q 013998 234 ISALEDELEKTRSSVENLQSKL-RMGLEIENHLKKSVRELEKKIIH 278 (432)
Q Consensus 234 isaLEee~e~lr~si~~LQskL-R~glEIEnHLkk~~r~lEkkq~~ 278 (432)
...|+.+++.+++.++.|++++ |.--|+||.=+|-.++.+.-...
T Consensus 20 ~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~ 65 (172)
T PRK14147 20 TDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKF 65 (172)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888888774 88899999999999988875443
No 167
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=31.01 E-value=7.7e+02 Score=27.32 Aligned_cols=137 Identities=20% Similarity=0.305 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-chHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 013998 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGP-SYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (432)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGp-gyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR 90 (432)
.++-+-||..||-|=..|..||.-|=-=-.|+ |-|.+. .|-||-++++=+.-..++...++-++. +
T Consensus 51 LA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~----------ye~El~~ar~~l~e~~~~ra~~e~ei~---k 117 (546)
T KOG0977|consen 51 LAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAK----------YEAELATARKLLDETARERAKLEIEIT---K 117 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHH----------hhhhHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 35567788888888888888887663222223 333322 344555555555555555555554443 3
Q ss_pred HHHHHHHHHHH---HHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 013998 91 IKGQLADLHAA---EVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKK 167 (432)
Q Consensus 91 iK~qLadLh~a---e~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~ 167 (432)
++.++++|-+. ...--..++.+++-+.+..+..= ++++-+..|..-++.+..+.|.
T Consensus 118 l~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~le---------------------Ae~~~~krr~~~le~e~~~Lk~ 176 (546)
T KOG0977|consen 118 LREELKELRKKLEKAEKERRGAREKLDDYLSRLSELE---------------------AEINTLKRRIKALEDELKRLKA 176 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhh---------------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444111 00111122233333333322221 3444455555555555555566
Q ss_pred hhHHHhhhHHHHHHh
Q 013998 168 QNATLRFDLEKQEEL 182 (432)
Q Consensus 168 ~n~~Lq~dl~~~~eq 182 (432)
.|..|..+|...+.+
T Consensus 177 en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 177 ENSRLREELARARKQ 191 (546)
T ss_pred HhhhhHHHHHHHHHH
Confidence 666665555555543
No 168
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=30.90 E-value=4.1e+02 Score=24.08 Aligned_cols=72 Identities=25% Similarity=0.374 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhHHHHhhh-----------hhhhHHHHH-HhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013998 234 ISALEDELEKTRSSVENLQSK-----------LRMGLEIEN-HLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHV 301 (432)
Q Consensus 234 isaLEee~e~lr~si~~LQsk-----------LR~glEIEn-HLkk~~r~lEkkq~~~d~~i~Ngis~L~~~h~~~R~~I 301 (432)
++.|..+.++|+..+++|..+ +|+-+..|. ..+.....++.+..-.+.=|...|++|+.---..|.++
T Consensus 75 ~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 75 FAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544444 444443333 44555566666666666667777888887777777777
Q ss_pred HHhh
Q 013998 302 VNSL 305 (432)
Q Consensus 302 m~lL 305 (432)
++.+
T Consensus 155 lr~~ 158 (177)
T PF07798_consen 155 LRWL 158 (177)
T ss_pred HHHH
Confidence 7665
No 169
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=30.86 E-value=67 Score=27.93 Aligned_cols=33 Identities=39% Similarity=0.639 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHH
Q 013998 60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKG 93 (432)
Q Consensus 60 LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~ 93 (432)
.|.|.+-|+++++-.-.+|..|..||+. |+.+.
T Consensus 13 vEEEa~LlRRkl~ele~eN~~l~~EL~k-yk~~~ 45 (96)
T PF11365_consen 13 VEEEAELLRRKLSELEDENKQLTEELNK-YKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 3788999999999999999999999998 76654
No 170
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=30.75 E-value=3e+02 Score=22.54 Aligned_cols=42 Identities=29% Similarity=0.347 Sum_probs=29.2
Q ss_pred HhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 013998 48 VATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (432)
Q Consensus 48 vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY 89 (432)
=|...+-.|...|+..++++.+.+......=..++..+.+.|
T Consensus 87 eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~ 128 (129)
T cd00890 87 EAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQ 128 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 366777778888888888888877776666666666555543
No 171
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=30.43 E-value=73 Score=25.07 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=24.8
Q ss_pred CcchhhhHHHHHHHHHHHHhhHHHHhhh
Q 013998 227 DTSTSKYISALEDELEKTRSSVENLQSK 254 (432)
Q Consensus 227 ~tStskyisaLEee~e~lr~si~~LQsk 254 (432)
.+++++=|+.|+.|+..|++.+..+|+.
T Consensus 24 ~~~a~~rl~~l~~EN~~Lr~eL~~~r~~ 51 (52)
T PF12808_consen 24 RSAARKRLSKLEGENRLLRAELERLRSR 51 (52)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4578899999999999999999988863
No 172
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=30.10 E-value=2.2e+02 Score=29.41 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013998 14 ALMARIQQLEHERDELRKDIEQ 35 (432)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEq 35 (432)
.+..++..|.++|+++.|.|-.
T Consensus 39 ~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 39 ELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888865
No 173
>PRK14160 heat shock protein GrpE; Provisional
Probab=30.03 E-value=5.2e+02 Score=25.07 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHhhHHHHhhh-hhhhHHHHHHhHHhHHHHHHh
Q 013998 231 SKYISALEDELEKTRSSVENLQSK-LRMGLEIENHLKKSVRELEKK 275 (432)
Q Consensus 231 skyisaLEee~e~lr~si~~LQsk-LR~glEIEnHLkk~~r~lEkk 275 (432)
-+=+.+|+++++.++..++.|..+ ||.--++||-=+|-.|+.+.-
T Consensus 60 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 105 (211)
T PRK14160 60 KDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGI 105 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888777765 578889999999988888763
No 174
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=30.01 E-value=6e+02 Score=25.79 Aligned_cols=61 Identities=11% Similarity=0.217 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHh
Q 013998 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAAC 74 (432)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c 74 (432)
.+-+..++.+++.+-++..+-+... +++.|- ++.-.+-...+|...+++++...+.++.+.
T Consensus 163 ~~fl~~ql~~~~~~L~~ae~~l~~f-~~~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~ 223 (498)
T TIGR03007 163 QRFIDEQIKTYEKKLEAAENRLKAF-KQENGG-ILPDQEGDYYSEISEAQEELEAARLELNEA 223 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcc-cCccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777666 555552 222223345566666666666555544433
No 175
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.93 E-value=8.8e+02 Score=27.70 Aligned_cols=209 Identities=27% Similarity=0.305 Sum_probs=114.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcchH----HHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHHHHhhhhHHHHHhh
Q 013998 57 TAGLEQEIEILKQKIAACARENSNLQ----EELSEAYRIKGQLAD------LHAAEVIKNMEAEKQVKFFQGCMAAAFAE 126 (432)
Q Consensus 57 tA~LEQeIE~Lkkkl~~c~rEn~nLQ----EELsEAYRiK~qLad------Lh~ae~~KN~e~EkqVkFfQs~VA~AFAE 126 (432)
.--|.+||+.|-++|...+++-..-- +=|-|--.+|-|+++ +-+-|+-+.+++=-|.+--+-.||..=-+
T Consensus 10 ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e 89 (772)
T KOG0999|consen 10 VEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEE 89 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 34456666666666666555533211 112333345555553 34567777777766666667778888888
Q ss_pred hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcc
Q 013998 127 RDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLET 206 (432)
Q Consensus 127 RD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~ 206 (432)
|.-||++---+| |+...+++.+++.-+.. +..+|+.-.+.++.+.+|..+|-+.-..+- .
T Consensus 90 ~EesLLqESaak--E~~yl~kI~eleneLKq--------------~r~el~~~q~E~erl~~~~sd~~e~~~~~E-~--- 149 (772)
T KOG0999|consen 90 REESLLQESAAK--EEYYLQKILELENELKQ--------------LRQELTNVQEENERLEKVHSDLKESNAAVE-D--- 149 (772)
T ss_pred hHHHHHHHHHHh--HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhhhcchhhH-H---
Confidence 999998855555 56666777666544332 234566666777777777777655432111 0
Q ss_pred cccchhhhhcccccccccccCcc-hhhhHHHHHHHHHHHHhhHHHHhhhhhhhHH---HHH--------HhHHhHHHHHH
Q 013998 207 SWEDKCACLLLDSAEMWSFNDTS-TSKYISALEDELEKTRSSVENLQSKLRMGLE---IEN--------HLKKSVRELEK 274 (432)
Q Consensus 207 s~~~Kc~~Ll~ds~~~WSfn~tS-tskyisaLEee~e~lr~si~~LQskLR~glE---IEn--------HLkk~~r~lEk 274 (432)
-- .=|.|-.--+-|-.+- .|.| +-||||+=+|...|++|.++ .|-+| +|+ -|+-.+.+...
T Consensus 150 ----qR-~rlr~elKe~KfRE~RllseY-SELEEENIsLQKqVs~LR~s-QVEyEglkheikRleEe~elln~q~ee~~~ 222 (772)
T KOG0999|consen 150 ----QR-RRLRDELKEYKFREARLLSEY-SELEEENISLQKQVSNLRQS-QVEYEGLKHEIKRLEEETELLNSQLEEAIR 222 (772)
T ss_pred ----HH-HHHHHHHHHHHHHHHHHHHHH-HHHHHhcchHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0011111223333332 3344 67888888888888877654 23222 221 12233333333
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 013998 275 KIIHSDKFISNAIAELRL 292 (432)
Q Consensus 275 kq~~~d~~i~Ngis~L~~ 292 (432)
-.-+.++-+..++-+|+.
T Consensus 223 Lk~IAekQlEEALeTlq~ 240 (772)
T KOG0999|consen 223 LKEIAEKQLEEALETLQQ 240 (772)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344556666666666653
No 176
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=29.88 E-value=79 Score=27.01 Aligned_cols=43 Identities=28% Similarity=0.408 Sum_probs=30.2
Q ss_pred CCchHHHhhHHHHHhhhhhHHHHHHHHHHH------HHhhhhhcchHHHH
Q 013998 42 GPSYLAVATRMHFQRTAGLEQEIEILKQKI------AACARENSNLQEEL 85 (432)
Q Consensus 42 Gpgyl~vATRM~~QRtA~LEQeIE~Lkkkl------~~c~rEn~nLQEEL 85 (432)
-.|-++.-+.+.-.. .+|..||+.|+.|+ .-+.-||..|++|+
T Consensus 12 ~~g~l~~~~~~~~e~-~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~ 60 (86)
T PF12711_consen 12 LDGKLPSESYLEEEN-EALKEEIQLLREQVEHNPEVTRFAMENIRLREEL 60 (86)
T ss_pred hcCCCCccchhHHHH-HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 334444556666666 88999999999765 45666787777776
No 177
>PLN02939 transferase, transferring glycosyl groups
Probab=29.83 E-value=1e+03 Score=28.26 Aligned_cols=184 Identities=20% Similarity=0.224 Sum_probs=100.3
Q ss_pred HHHHHHHH------HHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHH------------------
Q 013998 17 ARIQQLEH------ERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIA------------------ 72 (432)
Q Consensus 17 aRI~qLEh------ERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~------------------ 72 (432)
+|++-|++ |.+.|+.-|--|=|-=|-.+--...|-----||.-||..+|+|++.|.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (977)
T PLN02939 150 ARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELD 229 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHH
Confidence 45555554 899999999999997766322111121122345556666666655442
Q ss_pred HhhhhhcchHHHHHHHHHHHHHHHHH-------HH--HH----HHhhHHHHHHHHHhhhhHHHHHhhhhhhhHH------
Q 013998 73 ACARENSNLQEELSEAYRIKGQLADL-------HA--AE----VIKNMEAEKQVKFFQGCMAAAFAERDNSVME------ 133 (432)
Q Consensus 73 ~c~rEn~nLQEELsEAYRiK~qLadL-------h~--ae----~~KN~e~EkqVkFfQs~VA~AFAERD~slmE------ 133 (432)
-.-.||--|.+.+ --+|..|.+. +. .| -+--.++|+..--.|.-|+.--.=++-++||
T Consensus 230 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (977)
T PLN02939 230 VLKEENMLLKDDI---QFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQ 306 (977)
T ss_pred HHHHHhHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHH
Confidence 1222333333322 1123333322 00 11 1223456666666666666555555666776
Q ss_pred -----HHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh------hHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhh
Q 013998 134 -----AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQ------NATLRFDLEKQEELNESFKEVINKFYEIRQQSLE 202 (432)
Q Consensus 134 -----aEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~------n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e 202 (432)
+-+.-|+.-.++++-++++.++..+++.+.+-.-. -+.||..+.-++++.+.+..-|+-+-++-+.+++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (977)
T PLN02939 307 DLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIK 386 (977)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33334455566777778888887777766543211 1346666666777777777777766666655554
Q ss_pred h
Q 013998 203 V 203 (432)
Q Consensus 203 ~ 203 (432)
.
T Consensus 387 ~ 387 (977)
T PLN02939 387 E 387 (977)
T ss_pred H
Confidence 3
No 178
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=29.75 E-value=64 Score=30.83 Aligned_cols=32 Identities=38% Similarity=0.551 Sum_probs=29.5
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 013998 56 RTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (432)
Q Consensus 56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsE 87 (432)
++..||.|-+.||.++....++|.-||.|..+
T Consensus 106 K~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~e 137 (198)
T KOG0483|consen 106 KTKQLEKDYESLKRQLESLRSENDRLQSEVQE 137 (198)
T ss_pred cchhhhhhHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 57899999999999999999999999998765
No 179
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=29.51 E-value=3.6e+02 Score=23.72 Aligned_cols=60 Identities=12% Similarity=0.210 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH-hhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhh
Q 013998 142 ELMSQKFNEFQTRLEELSSENIELK-KQNATLRFDLEKQEELNESFKEVINKFYEIRQQSL 201 (432)
Q Consensus 142 e~m~qk~~e~e~R~~E~~s~~~~qK-~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~ 201 (432)
...++++.+++..+.++++.+.++- ++...++..++.+....+-+-..|.-|++-.-..+
T Consensus 6 ~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~e~ 66 (149)
T PF07352_consen 6 DWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAEANRDEL 66 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHhc
Confidence 4456899999999999999887665 67888888888999999988899998888766433
No 180
>smart00338 BRLZ basic region leucin zipper.
Probab=29.23 E-value=2.4e+02 Score=21.47 Aligned_cols=38 Identities=34% Similarity=0.460 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhh
Q 013998 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 183 (432)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~ 183 (432)
+.+.+++.++..|++...++......|..++..++.++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666666666655555443
No 181
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=28.87 E-value=8.2e+02 Score=26.99 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=25.7
Q ss_pred ccccchhhhhcccccccccccCcchhhhHHHHHHHHHHHHhhHHHHhhhh
Q 013998 206 TSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (432)
Q Consensus 206 ~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskL 255 (432)
+...+|-.-||.|+.. +|+.|+.-++.-.+++-.|++.+
T Consensus 379 ~~l~~k~~~lL~d~e~-----------ni~kL~~~v~~s~~rl~~L~~qW 417 (594)
T PF05667_consen 379 LKLKKKTVELLPDAEE-----------NIAKLQALVEASEQRLVELAQQW 417 (594)
T ss_pred HHHHHHHHHHhcCcHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667777766 56777777777777777666643
No 182
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=28.68 E-value=5e+02 Score=24.47 Aligned_cols=69 Identities=19% Similarity=0.343 Sum_probs=37.4
Q ss_pred HHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHH----------HHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHH
Q 013998 112 QVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQK----------FNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180 (432)
Q Consensus 112 qVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk----------~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~ 180 (432)
.|+|.|+-+-..++=+|...-=.+..|..|+.+.++ +.+++..+.+++-+....+..+.+-..++..++
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lk 165 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLK 165 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999988888888886555445555555544433 444444444444443333333334444444443
No 183
>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.
Probab=28.46 E-value=2.8e+02 Score=25.29 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=26.4
Q ss_pred HHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 013998 123 AFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIE 164 (432)
Q Consensus 123 AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~ 164 (432)
.+|.|=+.+++ .|-+++..+|..+-..+.++...+.+
T Consensus 11 ~~a~rg~~lLk-----~Krd~L~~e~~~~~~~~~~~r~~~~~ 47 (196)
T PF01813_consen 11 KLAKRGHKLLK-----KKRDALIREFRKLIKEAEELREELEE 47 (196)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777 77888888888887777776655533
No 184
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=28.44 E-value=4.5e+02 Score=24.40 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=26.2
Q ss_pred HhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 013998 124 FAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIE 164 (432)
Q Consensus 124 FAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~ 164 (432)
.|.|=..+++ .|.+++..+|..+-..+.++...+.+
T Consensus 22 ~a~rg~~lLk-----~Krd~L~~e~~~~~~~~~~~r~~~~~ 57 (204)
T PRK00373 22 LAERGHKLLK-----DKRDELIMEFFDILDEAKKLREEVEE 57 (204)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665 78888888888888888877666644
No 185
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.78 E-value=6.2e+02 Score=25.25 Aligned_cols=93 Identities=24% Similarity=0.224 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHh
Q 013998 59 GLEQEIEILKQKIAACARENSNLQEELSEAYRI-KGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKA 137 (432)
Q Consensus 59 ~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRi-K~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKa 137 (432)
|=++-++.|.++....-.|-..=-+++++|-|| |.-|+.|- ||+-++--.-.==+.-+.|+|--
T Consensus 30 ~~dr~v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~Ls---------------q~E~~mlKtqrv~e~nlre~e~~ 94 (222)
T KOG3215|consen 30 GGDRLVEHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLASLS---------------QDEPSMLKTQRVIEMNLREIENL 94 (222)
T ss_pred CCcHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHh---------------hcccchHHHHHHHHHHHHHHHHH
Confidence 445667777777665555544444459999999 55577773 34333333333334455666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 013998 138 KEKEELMSQKFNEFQTRLEELSSENIELK 166 (432)
Q Consensus 138 KE~Ee~m~qk~~e~e~R~~E~~s~~~~qK 166 (432)
-+..+.|-++|.+-..-++.+-.++.+.|
T Consensus 95 ~q~k~Eiersi~~a~~kie~lkkql~eaK 123 (222)
T KOG3215|consen 95 VQKKLEIERSIQKARNKIELLKKQLHEAK 123 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777777766665555
No 186
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.75 E-value=2.7e+02 Score=23.80 Aligned_cols=35 Identities=43% Similarity=0.492 Sum_probs=24.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 013998 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELK 166 (432)
Q Consensus 132 mEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK 166 (432)
||.|..||+--...+...+.+.-.+.+++.....|
T Consensus 25 mEieELKEknn~l~~e~q~~q~~reaL~~eneqlk 59 (79)
T COG3074 25 MEIEELKEKNNSLSQEVQNAQHQREALERENEQLK 59 (79)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999888888877776665555554443333
No 187
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=27.26 E-value=2.5e+02 Score=30.09 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 013998 18 RIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (432)
Q Consensus 18 RI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEA 88 (432)
+|..||.+-.+|.+.|+.|=.+-+.|.+. +.--..+.+.|-++++.++++|..+..+=..|.++|.|+
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLGDSELY---DQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhc---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665555555431 111112555566666666666666655555555555443
No 188
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.11 E-value=1.1e+03 Score=27.92 Aligned_cols=37 Identities=35% Similarity=0.364 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHH
Q 013998 59 GLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQL 95 (432)
Q Consensus 59 ~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qL 95 (432)
+|.-+|++++.+.....-+|..|++++-.---.++||
T Consensus 668 ~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql 704 (970)
T KOG0946|consen 668 ELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQL 704 (970)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555688888888888888888877664443333333
No 189
>PRK13694 hypothetical protein; Provisional
Probab=27.05 E-value=2.3e+02 Score=24.51 Aligned_cols=35 Identities=26% Similarity=0.575 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 013998 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSY 45 (432)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgy 45 (432)
...+.+.||..||.|...+.-||--+----.|-||
T Consensus 13 ~Lr~fIERIERLEeEkk~i~~dikdVyaEAK~~Gf 47 (83)
T PRK13694 13 QLRAFIERIERLEEEKKTISDDIKDVYAEAKGNGF 47 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35678899999999999999999999888889999
No 190
>PRK14143 heat shock protein GrpE; Provisional
Probab=26.98 E-value=2.9e+02 Score=27.09 Aligned_cols=46 Identities=30% Similarity=0.500 Sum_probs=38.9
Q ss_pred hhhhHHHHHHHHHHHHhhHHHHhhhh-hhhHHHHHHhHHhHHHHHHh
Q 013998 230 TSKYISALEDELEKTRSSVENLQSKL-RMGLEIENHLKKSVRELEKK 275 (432)
Q Consensus 230 tskyisaLEee~e~lr~si~~LQskL-R~glEIEnHLkk~~r~lEkk 275 (432)
..+=+..|+++++.++..++.|.+++ |.--++||.=||..|+.+.-
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~ 111 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDL 111 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457899999999999999998874 89999999999988887753
No 191
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=26.69 E-value=3.8e+02 Score=24.97 Aligned_cols=105 Identities=24% Similarity=0.289 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHH------hhhhhhh----------
Q 013998 140 KEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEI------RQQSLEV---------- 203 (432)
Q Consensus 140 ~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyei------R~~~~e~---------- 203 (432)
+=|.|+-.+++++.--.-....+.+-.-+-.||+.+|..+....-.+..|.||=-++ .|..-+.
T Consensus 7 ~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~~~~~ 86 (134)
T PF15233_consen 7 QIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQTLLQ 86 (134)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 345667777777774444444555666688899999988865544444666654333 3332222
Q ss_pred ---hcccccchhhhhcccccccccccC-cchhhhHHHHHHHHHHH
Q 013998 204 ---LETSWEDKCACLLLDSAEMWSFND-TSTSKYISALEDELEKT 244 (432)
Q Consensus 204 ---~~~s~~~Kc~~Ll~ds~~~WSfn~-tStskyisaLEee~e~l 244 (432)
.-+.|+..---|+.--.+.|-|-- -+.+.=|++|+--.+.|
T Consensus 87 eck~R~~fe~qLE~lm~qHKdLwefh~~erLa~EI~~l~~sKEQL 131 (134)
T PF15233_consen 87 ECKLRLDFEEQLEDLMGQHKDLWEFHMPERLAREICALESSKEQL 131 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHH
Confidence 123344443444445556666663 25555666665544443
No 192
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=26.60 E-value=5.9e+02 Score=30.26 Aligned_cols=71 Identities=28% Similarity=0.343 Sum_probs=43.1
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 013998 75 ARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTR 154 (432)
Q Consensus 75 ~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R 154 (432)
+|+-..++.+|-||.|=-.-+.| |-++|||+ ||-++|-+-+..|+-+..-..++-+-+-
T Consensus 329 trqkadirc~LlEarrk~egfdd-------k~~eLEKk--------------rd~al~dvr~i~e~k~nve~elqsL~~l 387 (1265)
T KOG0976|consen 329 TRQKADIRCALLEARRKAEGFDD-------KLNELEKK--------------RDMALMDVRSIQEKKENVEEELQSLLEL 387 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhcchhH-------HHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666666554333433 35678874 8888998887766655554444444444
Q ss_pred HHHHhHHHHHHH
Q 013998 155 LEELSSENIELK 166 (432)
Q Consensus 155 ~~E~~s~~~~qK 166 (432)
..|.+.+|+++|
T Consensus 388 ~aerqeQidelK 399 (1265)
T KOG0976|consen 388 QAERQEQIDELK 399 (1265)
T ss_pred HHHHHHHHHHHH
Confidence 555666666666
No 193
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=26.41 E-value=5.4e+02 Score=24.04 Aligned_cols=35 Identities=17% Similarity=0.343 Sum_probs=25.9
Q ss_pred HhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 013998 124 FAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENI 163 (432)
Q Consensus 124 FAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~ 163 (432)
.|.|=..+++ .|.+++..+|..+-..+.++...+.
T Consensus 20 ~a~rg~~lLk-----~Krd~L~~e~~~~~~~~~~~r~~~~ 54 (209)
T TIGR00309 20 MAKRGYSLLK-----LKRDALIMEFRQILERAKDIKNKME 54 (209)
T ss_pred HHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665 7888888888888888887776665
No 194
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=26.40 E-value=6 Score=27.39 Aligned_cols=16 Identities=50% Similarity=0.688 Sum_probs=13.1
Q ss_pred cCCchHHHhhHHHHHh
Q 013998 41 AGPSYLAVATRMHFQR 56 (432)
Q Consensus 41 aGpgyl~vATRM~~QR 56 (432)
+||+|++|||.-.+-|
T Consensus 9 ~g~~~vavaTS~~~lR 24 (27)
T PF12341_consen 9 AGDSWVAVATSAGYLR 24 (27)
T ss_pred ccCCEEEEEeCCCeEE
Confidence 7999999999765544
No 195
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=26.39 E-value=56 Score=26.19 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=27.8
Q ss_pred hhcccccccccccCcchhhhHHHHHHHHHHHHhhHHHHh
Q 013998 214 CLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQ 252 (432)
Q Consensus 214 ~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQ 252 (432)
.++...-+.||+.+ ...||+.|+.|...+++.+.+-+
T Consensus 12 ~~ig~dLs~lSv~E--L~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 12 HEIGEDLSLLSVEE--LEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred cccCCCchhcCHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667788774 24599999999999998887644
No 196
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=25.90 E-value=3.9e+02 Score=22.19 Aligned_cols=74 Identities=28% Similarity=0.289 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 013998 89 YRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSEN 162 (432)
Q Consensus 89 YRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~ 162 (432)
-+....++.=+..=..+..+++..+--|..-+-..=+.|..|+-.|++....-....+.+..+...+..+.+.+
T Consensus 24 ~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~ 97 (126)
T PF13863_consen 24 ERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEI 97 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444556667777777777777777777777887777777555555555555555555444444
No 197
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=25.89 E-value=4.2e+02 Score=24.63 Aligned_cols=60 Identities=23% Similarity=0.238 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013998 232 KYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHV 301 (432)
Q Consensus 232 kyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i~Ngis~L~~~h~~~R~~I 301 (432)
.-|+.|+.++..|...+..|..+.-.- .+..+.......+...+-|..|++-..+.++++
T Consensus 127 ~~i~~L~~e~~~L~~~~~~l~~~~e~~----------ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 127 EEIEELEEEKEELEKQVQELKNKCEQL----------EKREEELRQEEEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777777777666654322 222223333455666777888888888777765
No 198
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=25.80 E-value=3.4e+02 Score=27.96 Aligned_cols=22 Identities=36% Similarity=0.675 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013998 14 ALMARIQQLEHERDELRKDIEQ 35 (432)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEq 35 (432)
.+..++..|++||+.+.|.|-+
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888865
No 199
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.78 E-value=3.3e+02 Score=22.97 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=29.7
Q ss_pred HHHHHHHHHhHHHHHHH----hhhHHH---hhhHHHHHHhhHhHHHHHHHHHHHhhhhh
Q 013998 150 EFQTRLEELSSENIELK----KQNATL---RFDLEKQEELNESFKEVINKFYEIRQQSL 201 (432)
Q Consensus 150 e~e~R~~E~~s~~~~qK----~~n~~L---q~dl~~~~eq~e~~~kVi~KFyeiR~~~~ 201 (432)
.++.|+.+|+....-|. ++|++| |+.+..+.+|. .-+++||-+++....
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~ql---r~L~~kl~~~~~~~~ 60 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQL---RLLTEKLKDLQPSAI 60 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccc
Confidence 56777777777665554 455555 33344444444 478889988776443
No 200
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=25.73 E-value=47 Score=26.73 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhhhhH
Q 013998 233 YISALEDELEKTRSSVENLQSKLRMGL 259 (432)
Q Consensus 233 yisaLEee~e~lr~si~~LQskLR~gl 259 (432)
|=.|.+==.+.=+.|++.||.+||+|+
T Consensus 8 y~~a~~~V~~~~~~S~S~lQR~~rIGy 34 (65)
T PF09397_consen 8 YEEAVEFVIEEGKASISLLQRKFRIGY 34 (65)
T ss_dssp HHHHHHHHHHCTCECHHHHHHHHT--H
T ss_pred HHHHHHHHHHcCCccHHHHHHHhCCCH
Confidence 444444445566789999999999995
No 201
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=25.47 E-value=4.4e+02 Score=27.80 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcC---CchHHHhhH
Q 013998 11 ESEALMARIQQLEHERDELRKDIEQLCMQ--QAG---PSYLAVATR 51 (432)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQ--QaG---pgyl~vATR 51 (432)
..|-+..+.+.|.||-.||--.+|+|=.= .|- -.|+.+|+-
T Consensus 88 ~kETp~qK~qRll~Ev~eL~~eve~ik~dk~~a~Eek~t~~l~A~v 133 (371)
T KOG3958|consen 88 VKETPQQKYQRLLHEVQELTTEVEKIKTDKESATEEKLTPVLLAKV 133 (371)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcchHHHHHH
Confidence 46777889999999999999999988542 111 356666653
No 202
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=25.12 E-value=4.5e+02 Score=22.74 Aligned_cols=73 Identities=26% Similarity=0.360 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHH
Q 013998 12 SEALMARIQQLEHERDELRKDIEQLCM--QQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEEL 85 (432)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCM--QQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEEL 85 (432)
+...+..|..|..+-.+++..|.+|.- +.|... +..+-.=|..+=..|+.+|..++.++.....-|.=|...|
T Consensus 54 Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~-l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 54 HAEDIKELQQLREELQELQQEINELKAEAESAKAE-LEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445577788888888888888888876 333333 3455566888888999999999999988888887766544
No 203
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=24.99 E-value=60 Score=26.67 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=24.5
Q ss_pred HHHHHHhhhhhhh-hcccccchhhhhccccccccccc
Q 013998 191 NKFYEIRQQSLEV-LETSWEDKCACLLLDSAEMWSFN 226 (432)
Q Consensus 191 ~KFyeiR~~~~e~-~~~s~~~Kc~~Ll~ds~~~WSfn 226 (432)
.+||..=...+.. ..+++++=.-+|..-+.++|||+
T Consensus 46 ~~ly~~l~~~L~~~~gi~p~Dv~I~l~e~~~edWSFg 82 (82)
T PF14552_consen 46 KALYRALAERLAEKLGIRPEDVMIVLVENPREDWSFG 82 (82)
T ss_dssp HHHHHHHHHHHHHHH---GGGEEEEEEEE-GGGEEEC
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEEEEEECCcccCCCC
Confidence 4566655555544 78999999999999999999995
No 204
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=24.99 E-value=68 Score=25.87 Aligned_cols=28 Identities=36% Similarity=0.485 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHhhHHHHhhhhhhhH
Q 013998 232 KYISALEDELEKTRSSVENLQSKLRMGL 259 (432)
Q Consensus 232 kyisaLEee~e~lr~si~~LQskLR~gl 259 (432)
-|-.+++==+++=+.|++-||-+||+|+
T Consensus 6 ly~~a~~~V~~~~~~S~S~lQR~~~IGy 33 (63)
T smart00843 6 LYDEAVELVIETQKASTSLLQRRLRIGY 33 (63)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHhcch
Confidence 4666777677778899999999999995
No 205
>PLN02678 seryl-tRNA synthetase
Probab=24.72 E-value=3.1e+02 Score=29.03 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013998 15 LMARIQQLEHERDELRKDIEQ 35 (432)
Q Consensus 15 l~aRI~qLEhERDELrKDIEq 35 (432)
+..++..|.++|+.+.|.|-+
T Consensus 45 l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 45 RQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544
No 206
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=24.64 E-value=4.1e+02 Score=22.04 Aligned_cols=79 Identities=25% Similarity=0.235 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhh-HHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHH
Q 013998 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVAT-RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKG 93 (432)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vAT-RM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~ 93 (432)
...++.+|...+++...++...+ ++| +++.. +++..=...|.+.|...+..+..+...=...++.|.+|.+=+.
T Consensus 32 ~~~~l~~l~~~~~~~~~~~~~~~----~~g-~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k 106 (141)
T TIGR02473 32 LETQLQQLIKYREEYEQQALEKV----GAG-TSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELK 106 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544444332 334 33333 3444446789999999999999999888899999999999888
Q ss_pred HHHHH
Q 013998 94 QLADL 98 (432)
Q Consensus 94 qLadL 98 (432)
.+..|
T Consensus 107 ~lekL 111 (141)
T TIGR02473 107 ALEKL 111 (141)
T ss_pred HHHHH
Confidence 88887
No 207
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=24.61 E-value=7.9e+02 Score=25.38 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHhhhHHHHHHHHHHHHhhh
Q 013998 385 TLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLF 429 (432)
Q Consensus 385 alaqalqEK~~ALlL~SQqeER~llE~~~n~~lq~~ieeLQrNl~ 429 (432)
||--++++|-=||. +-|+-|.||-..|-||.+-|-
T Consensus 283 aLle~indK~~al~----------Hqr~tNkILg~rv~ELE~kl~ 317 (319)
T PF09789_consen 283 ALLETINDKNLALQ----------HQRKTNKILGNRVAELEKKLK 317 (319)
T ss_pred HHHHHhhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHh
Confidence 45666778887774 678999999999999988764
No 208
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=24.34 E-value=8.2e+02 Score=25.45 Aligned_cols=52 Identities=31% Similarity=0.378 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 013998 233 YISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLR 298 (432)
Q Consensus 233 yisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i~Ngis~L~~~h~~~R 298 (432)
-++.||.++-.+++ |-..|.|.||+||+..-....--+|-|-.|-.|-...-
T Consensus 92 q~s~Leddlsqt~a--------------ikeql~kyiReLEQaNDdLErakRati~sleDfeqrLn 143 (333)
T KOG1853|consen 92 QESQLEDDLSQTHA--------------IKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLN 143 (333)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHH
Confidence 45666666666554 33345566666666665555555665555555544433
No 209
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.26 E-value=4e+02 Score=21.82 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 013998 60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (432)
Q Consensus 60 LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL 98 (432)
|...++.|+.++..+.+....|+..+++.=..|..|..+
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l 42 (129)
T cd00890 4 LAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETL 42 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344466667777777777778888888887888877777
No 210
>PF08077 Cm_res_leader: Chloramphenicol resistance gene leader peptide; InterPro: IPR012537 This family consists of chloramphenicol (Cm) resistance gene leader peptides. Inducible resistance to Cm in both Gram-positive and Gram-negative bacteria is controlled by translation attenuation. In translation attenuation, the ribosome-binding-site (RBS) for the resistance determinant is sequestered in a secondary structure domain within the mRNA. Preceding the secondary structure is a short, translated ORF termed the leader. Ribosome stalling in the leader causes the destabilisation of the downstream secondary structure, allowing initiation of translation of the Cm resistance gene [].
Probab=24.25 E-value=12 Score=23.92 Aligned_cols=11 Identities=64% Similarity=0.927 Sum_probs=9.4
Q ss_pred cC-CchHHHhhH
Q 013998 41 AG-PSYLAVATR 51 (432)
Q Consensus 41 aG-pgyl~vATR 51 (432)
+| ||-++|.||
T Consensus 2 sgvpgalavvtr 13 (17)
T PF08077_consen 2 SGVPGALAVVTR 13 (17)
T ss_pred CCCCceEEEEEE
Confidence 56 999999987
No 211
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=24.23 E-value=1.3e+02 Score=29.07 Aligned_cols=42 Identities=29% Similarity=0.487 Sum_probs=34.4
Q ss_pred HHHhhhhhHHHHHHHHHHHH---------HhhhhhcchHHHHHHHHHHHHHHH
Q 013998 53 HFQRTAGLEQEIEILKQKIA---------ACARENSNLQEELSEAYRIKGQLA 96 (432)
Q Consensus 53 ~~QRtA~LEQeIE~Lkkkl~---------~c~rEn~nLQEELsEAYRiK~qLa 96 (432)
-|..+..|++|.+++|++|+ |.+=.+.|+-|+ |||+.=+.+|
T Consensus 123 rf~~~~~L~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~--EAy~~lR~~A 173 (194)
T COG3707 123 RFEERRALRRELAKLKDRLEERKVIERAKGLLMKRRGLSEE--EAYKLLRRTA 173 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHH
Confidence 57788899999999999997 456677888875 8998877666
No 212
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=24.12 E-value=3.3e+02 Score=24.63 Aligned_cols=104 Identities=19% Similarity=0.214 Sum_probs=55.3
Q ss_pred hcccccchhhhhcccccccccccCcchhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHH
Q 013998 204 LETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFI 283 (432)
Q Consensus 204 ~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i 283 (432)
.++|.++|..+- +-+.+|. +-.|+-.+|++|.+...+|-.++.+|... +++++..| ..=.-.|+
T Consensus 19 ~~Lt~eeK~~lk--ev~~~~~-~~~~~de~i~~LK~ksP~L~~k~~~l~~~----------~k~ki~~L---~peak~Fv 82 (154)
T PF05823_consen 19 KNLTPEEKAELK--EVAKNYA-KFKNEDEMIAALKEKSPSLYEKAEKLRDK----------LKKKIDKL---SPEAKAFV 82 (154)
T ss_dssp HH--TTTHHHHH--HHHTT--------TTHHHHHHHH-HHHHHHHHHHHHH----------HHHTTTT-----HHHHHHH
T ss_pred HcCCHHHHHHHH--HHHHHcc-ccCCHHHHHHHHHHhCHHHHHHHHHHHHH----------HHHHHHcC---CHHHHHHH
Confidence 578888887654 4444453 23466779999999999999999888654 45555555 22333455
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHhhhhccchhhhhHHHHHhhh
Q 013998 284 SNAIAELRLCHSQL-------RVHVVNSLEEGRSHIKSISDVIEEKT 323 (432)
Q Consensus 284 ~Ngis~L~~~h~~~-------R~~Im~lL~e~~s~iks~~~~i~ek~ 323 (432)
.+=|...++.|.+. ..++-++..+--...++....+.+.|
T Consensus 83 ~~li~~~~~l~~~~~~G~~~~~~~lk~~~k~~~~~ykaLs~~ak~dL 129 (154)
T PF05823_consen 83 KELIAKARSLYAQYSAGEKPDLEELKQLAKKVIDSYKALSPEAKDDL 129 (154)
T ss_dssp HHHHHHHHHHHHHHHHT----THHHHHHH----HHHHTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhHHHHHcCCHHHHHHH
Confidence 55555555555542 23444444444455556666677777
No 213
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=23.82 E-value=1.7e+02 Score=32.35 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=50.4
Q ss_pred cccccccccCcchhhhHHHH---HHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHH
Q 013998 218 DSAEMWSFNDTSTSKYISAL---EDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAE 289 (432)
Q Consensus 218 ds~~~WSfn~tStskyisaL---Eee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i~Ngis~ 289 (432)
|+.+.|-=-++-+-+|-.+| |-+...+--++---|+-++|-.+=-.-++-....||.+.-+.-++++|||+.
T Consensus 39 d~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l~~~~~~ 113 (604)
T KOG3564|consen 39 DFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDMLKCDISG 113 (604)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc
Confidence 33444444455566675554 3444555556666778888877766778888899999999999999999874
No 214
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.65 E-value=9.9e+02 Score=26.46 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhh--hhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHH
Q 013998 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTA--GLEQEIEILKQKIAACARENSNLQEELSEAYRIK 92 (432)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA--~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK 92 (432)
-.++|.++.+.--+|.+-|=++-.+|.+ .|-- .|--+=|.|.+||- +|+.+|...--+|
T Consensus 374 ~~~KI~~~k~r~~~Ls~RiLRv~ikqei------------lr~~G~~L~~~EE~Lr~Kld-------tll~~ln~Pnq~k 434 (508)
T KOG3091|consen 374 AVAKIEEAKNRHVELSHRILRVMIKQEI------------LRKRGYALTPDEEELRAKLD-------TLLAQLNAPNQLK 434 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhccCCcCCccHHHHHHHHH-------HHHHHhcChHHHH
Confidence 3445555555555555555544444432 2222 34555677888874 4555666667889
Q ss_pred HHHHHHHHHHHHhh
Q 013998 93 GQLADLHAAEVIKN 106 (432)
Q Consensus 93 ~qLadLh~ae~~KN 106 (432)
..|+.|+-....+|
T Consensus 435 ~Rl~~L~e~~r~q~ 448 (508)
T KOG3091|consen 435 ARLDELYEILRMQN 448 (508)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999977776666
No 215
>PRK01156 chromosome segregation protein; Provisional
Probab=23.34 E-value=1e+03 Score=26.24 Aligned_cols=24 Identities=4% Similarity=0.267 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHhhHHHHhhhh
Q 013998 232 KYISALEDELEKTRSSVENLQSKL 255 (432)
Q Consensus 232 kyisaLEee~e~lr~si~~LQskL 255 (432)
.||..++.++..+...+..|.+++
T Consensus 469 e~i~~~~~~i~~l~~~i~~l~~~~ 492 (895)
T PRK01156 469 HIINHYNEKKSRLEEKIREIEIEV 492 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456655555555555555444443
No 216
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=23.15 E-value=5.2e+02 Score=26.87 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=19.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 013998 11 ESEALMARIQQLEHERDELRKDIEQL 36 (432)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqL 36 (432)
....|..+|.+|+.++..++..+.-+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~ 97 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDAL 97 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999988888887655544
No 217
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=23.09 E-value=5.3e+02 Score=22.85 Aligned_cols=63 Identities=21% Similarity=0.215 Sum_probs=41.2
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHhhhh
Q 013998 57 TAGLEQEIEILKQKIAACARENSNLQEELSEAYRIK--GQLADLHAAEVIKNMEAEKQVKFFQGC 119 (432)
Q Consensus 57 tA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK--~qLadLh~ae~~KN~e~EkqVkFfQs~ 119 (432)
.+.|..+|..|+.++.....++..|..||+.--..= .+|.+.-..--.++..++..+..+++.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456677788888888888888888888877532211 223333334455677888888888773
No 218
>smart00340 HALZ homeobox associated leucin zipper.
Probab=23.01 E-value=1.2e+02 Score=23.53 Aligned_cols=33 Identities=33% Similarity=0.386 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHH
Q 013998 61 EQEIEILKQKIAACARENSNLQEELSEAYRIKG 93 (432)
Q Consensus 61 EQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~ 93 (432)
|-|-|-||+=-...+.||..||.|+.|-.++|.
T Consensus 4 EvdCe~LKrcce~LteeNrRL~ke~~eLralk~ 36 (44)
T smart00340 4 EVDCELLKRCCESLTEENRRLQKEVQELRALKL 36 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445677888888889999999999999888774
No 219
>PRK14145 heat shock protein GrpE; Provisional
Probab=22.81 E-value=4.6e+02 Score=25.18 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=43.2
Q ss_pred CcchhhhHHHHHHHHHHHHhhHHHHhhh-hhhhHHHHHHhHHhHHHHHHhhh
Q 013998 227 DTSTSKYISALEDELEKTRSSVENLQSK-LRMGLEIENHLKKSVRELEKKII 277 (432)
Q Consensus 227 ~tStskyisaLEee~e~lr~si~~LQsk-LR~glEIEnHLkk~~r~lEkkq~ 277 (432)
..+++.-+..|+++++.++..++.|.++ ||.--|+||.=+|-.++.+.-..
T Consensus 40 ~~~~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~ 91 (196)
T PRK14145 40 QQQTVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVE 91 (196)
T ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999999998876 68889999999999888776443
No 220
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=22.80 E-value=1.5e+03 Score=27.91 Aligned_cols=241 Identities=22% Similarity=0.241 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhcCCchHHHhhHHHHHhh---hhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 013998 15 LMARIQQLEHERDELRKDIEQLCM-QQAGPSYLAVATRMHFQRT---AGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (432)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCM-QQaGpgyl~vATRM~~QRt---A~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR 90 (432)
|..-|.++.-++.+|++ +|.-. |+. .+.+++++.+=. ..|+-++..++..|....+.|.|++..+...--
T Consensus 470 L~e~i~~lk~~~~el~~--~q~~l~q~~----~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~ 543 (1317)
T KOG0612|consen 470 LEETIEKLKSEESELQR--EQKALLQHE----QKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNS 543 (1317)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34444555556666664 22111 111 234555555422 244555556666666666667777666665555
Q ss_pred HHHHHH---HH-------------HHHHHHhhHHHHHH--------HHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHH
Q 013998 91 IKGQLA---DL-------------HAAEVIKNMEAEKQ--------VKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQ 146 (432)
Q Consensus 91 iK~qLa---dL-------------h~ae~~KN~e~Ekq--------VkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~q 146 (432)
.+.+|. +. |.+++++-++-+.. ..--|.+--.---++-+-..++|+.++..-..+-
T Consensus 544 ~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e 623 (1317)
T KOG0612|consen 544 LRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISE 623 (1317)
T ss_pred HHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554 11 33333333322221 1111111111111222223344455555555555
Q ss_pred HHHHHHHHHHHHhHHHHH----------HHhhhHHHhhhHHH--HHHhhHhHHHHHHHHHHHhhhhhhhhcccccch-hh
Q 013998 147 KFNEFQTRLEELSSENIE----------LKKQNATLRFDLEK--QEELNESFKEVINKFYEIRQQSLEVLETSWEDK-CA 213 (432)
Q Consensus 147 k~~e~e~R~~E~~s~~~~----------qK~~n~~Lq~dl~~--~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~K-c~ 213 (432)
.+.+++.++..+++.... .++.|..-..+.++ ++.+.+--++++..+++- -..+|--+-...+ |.
T Consensus 624 ~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq--~~~E~~~~~L~~~e~~ 701 (1317)
T KOG0612|consen 624 IIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQ--ENAEHHRLRLQDKEAQ 701 (1317)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhHHHH
Confidence 555555555555554322 22222222233333 444445455555555442 1223311111111 11
Q ss_pred hhcccccccccccCcchhhhHHH----HHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHH
Q 013998 214 CLLLDSAEMWSFNDTSTSKYISA----LEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELE 273 (432)
Q Consensus 214 ~Ll~ds~~~WSfn~tStskyisa----LEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lE 273 (432)
+ -....|--.+-|+=-|..+ ++++++.|++. .+|++ +=.|||.++.+.+.
T Consensus 702 ~---~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d--~~~~~-----~~~~~l~r~~~~~~ 755 (1317)
T KOG0612|consen 702 M---KEIESKLSEEKSAREKAENLLLEIEAELEYLSND--YKQSQ-----EKLNELRRSKDQLI 755 (1317)
T ss_pred H---HHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhh--hhhhc-----cchhhhhhhHHHHH
Confidence 1 1223465556666667776 78888888764 34444 44567766655443
No 221
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.27 E-value=7.7e+02 Score=24.39 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHH
Q 013998 145 SQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 179 (432)
Q Consensus 145 ~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~ 179 (432)
-+++.+++..+.+++..+.+.+.....++.++..+
T Consensus 229 k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 229 KKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666655555555555555554444
No 222
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=22.26 E-value=47 Score=30.34 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=19.8
Q ss_pred HHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 013998 47 AVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (432)
Q Consensus 47 ~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY 89 (432)
+-+-++.+...+.|+.+-+.|+.++.....||..|..+++.+=
T Consensus 7 aq~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq 49 (181)
T PF09311_consen 7 AQVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQ 49 (181)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHT--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888999999999999999999999999999998653
No 223
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=22.11 E-value=9.5e+02 Score=25.38 Aligned_cols=223 Identities=21% Similarity=0.234 Sum_probs=0.0
Q ss_pred CCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH------HHHHHHhhH--------
Q 013998 42 GPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL------HAAEVIKNM-------- 107 (432)
Q Consensus 42 Gpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL------h~ae~~KN~-------- 107 (432)
|.|-+-.+---+..||-.++.+...|..++.|+. ++.+++.+...+..++.=+ -.+|+..=+
T Consensus 174 ~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~A~~----~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq 249 (511)
T PF09787_consen 174 EDGNAITAVVEFLKRTLKKEIERQELEERPKALR----HYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQ 249 (511)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q ss_pred HHHHHHHHhhh-hHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhH
Q 013998 108 EAEKQVKFFQG-CMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 186 (432)
Q Consensus 108 e~EkqVkFfQs-~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~ 186 (432)
.-||-+.+-.+ |.-..|..+-.+ ||.+..+..-+.+-..+..++..+..+..++.+.+ ..+....+++
T Consensus 250 ~kEklI~~LK~~~~~~~~~~~~~~-~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e----------~~~~~~~~~~ 318 (511)
T PF09787_consen 250 SKEKLIESLKEGCLEEGFDSSTNS-IELEELKQERDHLQEEIQLLERQIEQLRAELQDLE----------AQLEGEQESF 318 (511)
T ss_pred CHHHHHHHHHhcccccccccccch-hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhHHHHH
Q ss_pred HHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhH
Q 013998 187 KEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLK 266 (432)
Q Consensus 187 ~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLk 266 (432)
.+-..+.=........- +....-...|+-.--.++-.+..+..++--.. |.|+..+++.+...- +..---|+|+-|.
T Consensus 319 ~~~~~~~~~~~~~~~~~-e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~k-e~E~q~lr~~l~~~~-~~s~~~elE~rl~ 395 (511)
T PF09787_consen 319 REQPQELSQQLEPELTT-EAELRLYYQELYHYREELSRQKSPLQLKLKEK-ESEIQKLRNQLSARA-SSSSWNELESRLT 395 (511)
T ss_pred HHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH-HHHHHHHHHHHHHHh-ccCCcHhHHHHHh
Q ss_pred HhHHHHHHhhhhhHHH
Q 013998 267 KSVRELEKKIIHSDKF 282 (432)
Q Consensus 267 k~~r~lEkkq~~~d~~ 282 (432)
-.-..|=.||-.+..+
T Consensus 396 ~lt~~Li~KQ~~lE~l 411 (511)
T PF09787_consen 396 QLTESLIQKQTQLESL 411 (511)
T ss_pred hccHHHHHHHHHHHHH
No 224
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=22.06 E-value=1.5e+03 Score=27.58 Aligned_cols=93 Identities=22% Similarity=0.208 Sum_probs=49.6
Q ss_pred cchHHHHHHHHHHHHHH--HHH---HHHHHHHHHhhcCCchHHHhhHHHHHhh--hhhHHHHHHHHHHHHHhhhhhcchH
Q 013998 10 NESEALMARIQQLEHER--DEL---RKDIEQLCMQQAGPSYLAVATRMHFQRT--AGLEQEIEILKQKIAACARENSNLQ 82 (432)
Q Consensus 10 ~~~esl~aRI~qLEhER--DEL---rKDIEqLCMQQaGpgyl~vATRM~~QRt--A~LEQeIE~Lkkkl~~c~rEn~nLQ 82 (432)
..++++.....||..-| +-| |.=...|=|=|+- .|=+.++.|.---+ .+|+.++|.|..++...+
T Consensus 357 ~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqss-s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~------- 428 (1195)
T KOG4643|consen 357 LENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSS-SYEELISKHLELEKEHKNLSKKHEILEERINQLL------- 428 (1195)
T ss_pred hhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHH-------
Confidence 45667777777776611 111 1123344443333 78777887776555 556666666666443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 013998 83 EELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQ 117 (432)
Q Consensus 83 EELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQ 117 (432)
-.+..|-|+++.-.+-+..+.+.++--+
T Consensus 429 -------qq~~eled~~K~L~~E~ekl~~e~~t~~ 456 (1195)
T KOG4643|consen 429 -------QQLAELEDLEKKLQFELEKLLEETSTVT 456 (1195)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444555555555555655554433
No 225
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=21.89 E-value=6.2e+02 Score=23.17 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=18.3
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHH
Q 013998 56 RTAGLEQEIEILKQKIAACARENSNLQEEL 85 (432)
Q Consensus 56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEEL 85 (432)
|+-+||.|++..+..+.....+|-|-+.++
T Consensus 25 ~v~~LEreLe~~q~~~e~~~~daEn~k~ei 54 (140)
T PF10473_consen 25 HVESLERELEMSQENKECLILDAENSKAEI 54 (140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455666666666666666666666655444
No 226
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=21.72 E-value=4.6e+02 Score=26.60 Aligned_cols=34 Identities=26% Similarity=0.628 Sum_probs=26.6
Q ss_pred HHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHH
Q 013998 240 ELEKTRSSVENLQSKLRMGLEIENHLKKSVRELE 273 (432)
Q Consensus 240 e~e~lr~si~~LQskLR~glEIEnHLkk~~r~lE 273 (432)
.+|+.|+.|..|+++++|...-=.=.-+++..|-
T Consensus 130 kidkTra~v~~L~tri~Vaiq~v~siS~~I~kLR 163 (312)
T PF04782_consen 130 KIDKTRASVKDLHTRIRVAIQSVDSISKRIEKLR 163 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999876555555555553
No 227
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=21.68 E-value=6.6e+02 Score=23.37 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=26.6
Q ss_pred cchhhhHHHHHHHHHHHHhhHHHHhhhhhh
Q 013998 228 TSTSKYISALEDELEKTRSSVENLQSKLRM 257 (432)
Q Consensus 228 tStskyisaLEee~e~lr~si~~LQskLR~ 257 (432)
-|..+...-||+-.+++-++|+.|.++++.
T Consensus 77 ~~~~~~~~~LEe~ke~l~k~i~~les~~e~ 106 (131)
T KOG1760|consen 77 VKLDKLQDQLEEKKETLEKEIEELESELES 106 (131)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788899999999999999999998875
No 228
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=21.62 E-value=1.2e+02 Score=25.48 Aligned_cols=28 Identities=39% Similarity=0.703 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013998 14 ALMARIQQLEHERDELRKDIEQLCMQQAG 42 (432)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLCMQQaG 42 (432)
-.++||...-.--|+|.|.|--| |+|||
T Consensus 38 QII~RiDDM~~riDDLEKnIaDL-m~qag 65 (73)
T KOG4117|consen 38 QIIGRIDDMSSRIDDLEKNIADL-MTQAG 65 (73)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHH-HHHcc
Confidence 45677777777889999999887 88898
No 229
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=21.49 E-value=1.2e+03 Score=26.25 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHH
Q 013998 65 EILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAA 122 (432)
Q Consensus 65 E~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~ 122 (432)
..+-+.+++.-.+|.||.+-.++|..+-...-.| ..|-..+-.+.--||+.|-+
T Consensus 267 ~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l----~ek~r~l~~D~nk~~~~~~~ 320 (622)
T COG5185 267 HIINTDIANLKTQNDNLYEKIQEAMKISQKIKTL----REKWRALKSDSNKYENYVNA 320 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHH
Confidence 3455566666678999999999999887666555 22333444555556666544
No 230
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=21.40 E-value=6.8e+02 Score=23.44 Aligned_cols=62 Identities=29% Similarity=0.393 Sum_probs=37.4
Q ss_pred HHHHHHhh-HHHHHHHHHh--hhhHHHHHh-hhhhhhHH-HHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 013998 99 HAAEVIKN-MEAEKQVKFF--QGCMAAAFA-ERDNSVME-AEKAKEKEELMSQKFNEFQTRLEELSSENIE 164 (432)
Q Consensus 99 h~ae~~KN-~e~EkqVkFf--Qs~VA~AFA-ERD~slmE-aEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~ 164 (432)
|+.+|.+. ..+++++++. =-.+|..|| ..|.-.++ ++|.|+.+ .+|.+.+.++.++.+.|-.
T Consensus 71 WK~eFe~Y~~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq----~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 71 WKEEFESYHEKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQ----EKVAEMERHVTELASQMAS 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 66666553 2345555544 356899999 77754444 33444333 6677777777777777644
No 231
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=21.31 E-value=9.5e+02 Score=25.08 Aligned_cols=31 Identities=32% Similarity=0.392 Sum_probs=24.5
Q ss_pred hcCCchHHHhh--HHHHHhhhhhHHHHHHHHHH
Q 013998 40 QAGPSYLAVAT--RMHFQRTAGLEQEIEILKQK 70 (432)
Q Consensus 40 QaGpgyl~vAT--RM~~QRtA~LEQeIE~Lkkk 70 (432)
-+|-||=.||. |=++.||+.--++|..+=..
T Consensus 391 E~GrGFAVVA~EVR~LA~~s~~at~~I~~~i~~ 423 (554)
T PRK15041 391 EQGRGFAVVAGEVRNLAQRSAQAAREIKSLIED 423 (554)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789988886 77999999988888876543
No 232
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=21.09 E-value=9.3e+02 Score=25.83 Aligned_cols=51 Identities=24% Similarity=0.287 Sum_probs=35.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHH
Q 013998 53 HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEV 103 (432)
Q Consensus 53 ~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~ 103 (432)
+-++++-|+=.++.|+...+.-.-|++.|-.||+||.|.+..|++-|+|-+
T Consensus 139 ~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf 189 (401)
T PF06785_consen 139 LREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATF 189 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344444444445555554444555789999999999999999999876544
No 233
>PRK14146 heat shock protein GrpE; Provisional
Probab=21.08 E-value=4.1e+02 Score=25.68 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhHHHHhhhh-hhhHHHHHHhHHhHHHHHHhhhh
Q 013998 234 ISALEDELEKTRSSVENLQSKL-RMGLEIENHLKKSVRELEKKIIH 278 (432)
Q Consensus 234 isaLEee~e~lr~si~~LQskL-R~glEIEnHLkk~~r~lEkkq~~ 278 (432)
+..|+.+++.++..++.|++++ |.--++||.=+|..++.+.-..+
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~ 101 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKE 101 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888888774 89999999999999988875443
No 234
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=21.07 E-value=2.7e+02 Score=24.08 Aligned_cols=40 Identities=25% Similarity=0.514 Sum_probs=30.7
Q ss_pred HHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHH
Q 013998 150 EFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEV 189 (432)
Q Consensus 150 e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kV 189 (432)
.++.|+.+++..+..+.+-|..|+..+..-.+.-..++++
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~l 85 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKL 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3788899999999888888888888887665555545544
No 235
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=21.00 E-value=7.1e+02 Score=23.52 Aligned_cols=124 Identities=23% Similarity=0.346 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHhhcC--CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH--
Q 013998 14 ALMARIQQLEHERDELRKDIE---QLCMQQAG--PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELS-- 86 (432)
Q Consensus 14 sl~aRI~qLEhERDELrKDIE---qLCMQQaG--pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELs-- 86 (432)
.|...|.+|+.+-++|+++-. +++.-|.. ..|-+.-+ =+.|..+....||-+|+.+|-..-..+..+...+.
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~-~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~ 94 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEA-ELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDK 94 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777654 44554443 33433333 34677788888999999988887777777777766
Q ss_pred --HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 013998 87 --EAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSEN 162 (432)
Q Consensus 87 --EAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~ 162 (432)
+-|+++.++-.|.+. |+ |+.|.|.++.-.+=..+-+++.+-+.++.+++..+
T Consensus 95 ~~el~k~~~~l~~L~~L------------------~~------dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 95 DEELLKTKDELKHLKKL------------------SE------DKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHH------------------HH------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777766332 11 44455555555555555566666666666555544
No 236
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.73 E-value=1.5e+03 Score=27.32 Aligned_cols=173 Identities=23% Similarity=0.293 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhh-------------------------hhHHHH
Q 013998 10 NESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTA-------------------------GLEQEI 64 (432)
Q Consensus 10 ~~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA-------------------------~LEQeI 64 (432)
++.|++.-||..|+-+-.=|+..+|-= .|.|- +++...|-+.- .+..|.
T Consensus 332 ~eve~lkEr~deletdlEILKaEmeek----G~~~~--~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kel 405 (1243)
T KOG0971|consen 332 QEVEALKERVDELETDLEILKAEMEEK----GSDGQ--AASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKEL 405 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCc--ccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhcchHHHHHHH----HHHHHHHHHHHHHH------HHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHH
Q 013998 65 EILKQKIAACARENSNLQEELSEA----YRIKGQLADLHAAE------VIKNMEAEKQVKFFQGCMAAAFAERDNSVMEA 134 (432)
Q Consensus 65 E~Lkkkl~~c~rEn~nLQEELsEA----YRiK~qLadLh~ae------~~KN~e~EkqVkFfQs~VA~AFAERD~slmEa 134 (432)
|..+-.+..+-|--.+|+.++.+| --+|.|++--.||| ..||.++|..|+-.---|+.-=|=+|--=-=+
T Consensus 406 E~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~ 485 (1243)
T KOG0971|consen 406 EKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQ 485 (1243)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHH--------------HHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHH
Q 013998 135 EKAKEKEELMSQKFNEF--------------QTRLEELSSENIELKKQNATLRFDLEKQEELNESFKE 188 (432)
Q Consensus 135 EKaKE~Ee~m~qk~~e~--------------e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~k 188 (432)
|-.+|-|-..-.++... ++-+-.+.--+.+-+++-..||..+..+..|+.|+.+
T Consensus 486 Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Ssee 553 (1243)
T KOG0971|consen 486 ESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEE 553 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
No 237
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=20.73 E-value=91 Score=30.65 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=17.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHhh
Q 013998 54 FQRTAGLEQEIEILKQKIAACA 75 (432)
Q Consensus 54 ~QRtA~LEQeIE~Lkkkl~~c~ 75 (432)
.+|+++||.|+..|+.|+++..
T Consensus 121 lqKIsALEdELs~LRaQIA~IV 142 (253)
T PF05308_consen 121 LQKISALEDELSRLRAQIAKIV 142 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999998888888887754
No 238
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=20.59 E-value=7.7e+02 Score=26.95 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013998 14 ALMARIQQLEHERDELRKDIEQLCM 38 (432)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLCM 38 (432)
.|..+|..|+.|++.|+..++.|=|
T Consensus 507 ~L~~~~~~Le~e~~~L~~~~~~Le~ 531 (722)
T PF05557_consen 507 ELQKEIEELERENERLRQELEELES 531 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777666666655554443
No 239
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=20.50 E-value=1e+02 Score=25.12 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHh
Q 013998 236 ALEDELEKTRSSVENLQSKLRMGLEIENHLKKS 268 (432)
Q Consensus 236 aLEee~e~lr~si~~LQskLR~glEIEnHLkk~ 268 (432)
|.-||+|-||+.|..|+.+.+ -||.||.+=|.
T Consensus 11 AVrEEVevLK~~I~eL~~~n~-~Le~EN~~Lk~ 42 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNS-QLEEENNLLKQ 42 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 566899999999999999877 47888876554
No 240
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=20.47 E-value=4.6e+02 Score=21.12 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=8.0
Q ss_pred hhHHHhhhHHHHHHhhH
Q 013998 168 QNATLRFDLEKQEELNE 184 (432)
Q Consensus 168 ~n~~Lq~dl~~~~eq~e 184 (432)
.|..|+.++..++++.+
T Consensus 40 rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 40 RNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444445544444
No 241
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=20.45 E-value=4.7e+02 Score=21.19 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 013998 59 GLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (432)
Q Consensus 59 ~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR 90 (432)
.||+++..|+..|...+|.|...+.++..--+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ 33 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRR 33 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999998888888877766544333
No 242
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=20.29 E-value=6.3e+02 Score=22.58 Aligned_cols=32 Identities=34% Similarity=0.456 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHH
Q 013998 141 EELMSQKFNEFQTRLEELSSENIELKKQNATL 172 (432)
Q Consensus 141 Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~L 172 (432)
-.+++.+++..++|+.|..+.+.-.|+.|..+
T Consensus 45 r~SLs~kL~ktnerLaevstkLl~Ekeq~rs~ 76 (111)
T PF12001_consen 45 RKSLSNKLNKTNERLAEVSTKLLVEKEQNRSL 76 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc
Confidence 36778999999999999988888777666443
No 243
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=20.28 E-value=6.7e+02 Score=22.89 Aligned_cols=27 Identities=19% Similarity=0.275 Sum_probs=17.5
Q ss_pred HHHHHHHHhhHHHHHHHHHhhhhHHHH
Q 013998 97 DLHAAEVIKNMEAEKQVKFFQGCMAAA 123 (432)
Q Consensus 97 dLh~ae~~KN~e~EkqVkFfQs~VA~A 123 (432)
||-+..+.+-..++.++.-|+..++.+
T Consensus 84 dLAr~al~~k~~~e~~~~~l~~~~~~~ 110 (221)
T PF04012_consen 84 DLAREALQRKADLEEQAERLEQQLDQA 110 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666677777777777665543
No 244
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=20.06 E-value=5.8e+02 Score=22.13 Aligned_cols=100 Identities=22% Similarity=0.234 Sum_probs=0.0
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 013998 7 EKENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELS 86 (432)
Q Consensus 7 ek~~~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELs 86 (432)
......|.+..++..++.+-+-|..+++.|--+-+.-.- ..++++.....+++++.....-+.++.+|+.
T Consensus 49 r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~er----------e~~~~~~~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 49 RDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELER----------ELASAEEKERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHH
Q 013998 87 EAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEK 140 (432)
Q Consensus 87 EAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE~ 140 (432)
.....=.+..-.|..|+-|.. .|-++.|++
T Consensus 119 klk~~~~~~~tq~~~e~rkke------------------------~E~~kLk~r 148 (151)
T PF11559_consen 119 KLKNQLQQRKTQYEHELRKKE------------------------REIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHH
Done!