Query 013998
Match_columns 432
No_of_seqs 15 out of 17
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 03:38:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 90.8 2.4 8.3E-05 41.0 12.0 62 137-198 528-589 (597)
2 3s4r_A Vimentin; alpha-helix, 89.1 1.9 6.4E-05 35.0 8.2 65 11-87 17-81 (93)
3 1c1g_A Tropomyosin; contractIl 88.5 9 0.00031 31.3 34.7 23 14-36 3-25 (284)
4 1i84_S Smooth muscle myosin he 86.2 3.5 0.00012 44.8 10.6 13 20-32 781-793 (1184)
5 1c1g_A Tropomyosin; contractIl 86.2 13 0.00043 30.5 33.8 24 233-256 217-240 (284)
6 1m1j_B Fibrinogen beta chain; 85.2 8.3 0.00028 39.3 12.1 63 230-292 91-153 (464)
7 3o0z_A RHO-associated protein 85.0 4.7 0.00016 36.5 9.2 77 14-96 52-138 (168)
8 3tnu_B Keratin, type II cytosk 84.5 13 0.00045 30.9 11.2 66 146-251 36-101 (129)
9 3oja_B Anopheles plasmodium-re 84.3 29 0.00099 33.5 15.0 38 146-183 544-581 (597)
10 3o0z_A RHO-associated protein 81.1 32 0.0011 31.2 17.0 124 134-294 29-152 (168)
11 2fxo_A Myosin heavy chain, car 80.5 24 0.00082 29.4 15.4 108 56-191 14-121 (129)
12 1go4_E MAD1 (mitotic arrest de 80.4 5.7 0.00019 33.3 7.4 29 11-39 13-41 (100)
13 3tnu_A Keratin, type I cytoske 80.3 15 0.0005 30.7 9.9 66 146-251 38-103 (131)
14 2dfs_A Myosin-5A; myosin-V, in 80.0 19 0.00067 39.4 13.3 30 58-87 924-953 (1080)
15 2zqm_A Prefoldin beta subunit 79.2 9.1 0.00031 30.1 7.9 77 13-89 23-111 (117)
16 3ol1_A Vimentin; structural ge 77.4 30 0.001 28.7 12.6 53 60-112 18-70 (119)
17 1nkp_A C-MYC, MYC proto-oncoge 77.1 6.8 0.00023 31.2 6.6 54 188-253 20-73 (88)
18 2dfs_A Myosin-5A; myosin-V, in 74.6 88 0.003 34.4 16.5 14 25-38 961-974 (1080)
19 2efr_A General control protein 72.7 51 0.0017 29.2 20.8 121 60-197 26-146 (155)
20 2v71_A Nuclear distribution pr 72.6 57 0.002 29.8 14.7 55 233-301 89-143 (189)
21 1fxk_A Prefoldin; archaeal pro 72.3 14 0.00047 28.7 7.3 75 12-86 17-103 (107)
22 3hnw_A Uncharacterized protein 67.9 30 0.001 29.7 8.9 31 132-162 103-133 (138)
23 2ke4_A CDC42-interacting prote 66.9 19 0.00065 29.6 7.2 72 11-98 9-88 (98)
24 3mq9_A Bone marrow stromal ant 66.0 9.6 0.00033 36.2 6.0 50 378-431 367-416 (471)
25 1am9_A Srebp-1A, protein (ster 64.9 9.1 0.00031 29.9 4.8 53 189-255 21-73 (82)
26 1fxk_A Prefoldin; archaeal pro 64.4 47 0.0016 25.7 10.8 84 143-255 5-88 (107)
27 1deq_A Fibrinogen (alpha chain 64.2 24 0.00081 35.7 8.7 54 250-303 96-149 (390)
28 2b5u_A Colicin E3; high resolu 63.2 53 0.0018 34.5 11.2 50 72-131 317-376 (551)
29 2v4h_A NF-kappa-B essential mo 62.3 21 0.00073 30.6 6.9 66 12-81 40-109 (110)
30 4h22_A Leucine-rich repeat fli 61.8 59 0.002 27.6 9.4 61 124-184 22-82 (103)
31 1l8d_A DNA double-strand break 61.5 31 0.0011 27.2 7.4 50 37-86 53-102 (112)
32 3swy_A Cyclic nucleotide-gated 61.2 20 0.00068 26.5 5.6 40 236-275 2-45 (46)
33 3vkg_A Dynein heavy chain, cyt 61.0 2.4E+02 0.0082 35.0 17.7 93 144-237 2033-2128(3245)
34 1hlo_A Protein (transcription 60.8 12 0.00041 28.8 4.7 52 189-253 27-78 (80)
35 1nkp_B MAX protein, MYC proto- 60.3 15 0.00051 28.3 5.2 53 189-254 17-69 (83)
36 2zqm_A Prefoldin beta subunit 60.3 59 0.002 25.4 11.6 85 142-255 9-93 (117)
37 3mtu_A Tropomyosin alpha-1 cha 59.5 10 0.00035 29.7 4.2 32 10-42 16-51 (75)
38 2akf_A Coronin-1A; coiled coil 59.3 5.1 0.00017 28.0 2.1 22 234-255 1-22 (32)
39 3ghg_B Fibrinogen beta chain; 58.1 35 0.0012 35.0 8.7 111 212-323 63-179 (461)
40 1zme_C Proline utilization tra 57.9 8.9 0.0003 27.6 3.3 27 230-256 42-68 (70)
41 3swk_A Vimentin; cytoskeleton, 57.0 34 0.0012 27.2 6.9 61 63-123 1-61 (86)
42 3vkg_A Dynein heavy chain, cyt 52.9 4.2E+02 0.014 33.0 22.5 24 46-69 1901-1924(3245)
43 1nlw_A MAD protein, MAX dimeri 50.3 19 0.00066 28.2 4.4 56 188-255 15-70 (80)
44 3etw_A Adhesin A; antiparallel 50.2 1.2E+02 0.0042 26.0 10.8 37 56-98 10-46 (119)
45 3na7_A HP0958; flagellar bioge 49.1 1.5E+02 0.0051 26.7 17.8 58 14-88 15-72 (256)
46 3swf_A CGMP-gated cation chann 48.0 34 0.0012 27.5 5.5 41 236-276 4-48 (74)
47 1l8d_A DNA double-strand break 47.2 53 0.0018 25.8 6.5 25 232-256 64-88 (112)
48 3hnw_A Uncharacterized protein 45.0 89 0.003 26.8 8.0 30 57-86 105-134 (138)
49 2jo8_A Serine/threonine-protei 44.4 49 0.0017 25.1 5.5 39 268-306 11-49 (51)
50 3ghg_C Fibrinogen gamma chain; 44.1 2.5E+02 0.0086 28.2 12.2 118 220-355 13-159 (411)
51 1joc_A EEA1, early endosomal a 43.7 90 0.0031 25.9 7.7 52 125-176 4-55 (125)
52 3ghg_A Fibrinogen alpha chain; 43.0 45 0.0015 35.1 6.9 64 259-323 81-147 (562)
53 3etv_A Protein transport prote 42.4 64 0.0022 32.3 7.6 33 293-325 300-333 (355)
54 3i00_A HIP-I, huntingtin-inter 41.7 1.3E+02 0.0043 25.6 8.4 25 107-138 50-74 (120)
55 3ssb_C IMPI alpha, inducible m 41.4 8.8 0.0003 27.9 1.0 16 344-359 20-35 (40)
56 1m1j_A Fibrinogen alpha subuni 41.4 1.6E+02 0.0055 30.6 10.5 151 219-381 38-221 (491)
57 2v66_B Nuclear distribution pr 41.2 1.6E+02 0.0056 24.9 13.5 63 53-115 8-74 (111)
58 1wt6_A Myotonin-protein kinase 40.4 1.4E+02 0.0047 24.5 8.0 64 121-184 2-69 (81)
59 2d1l_A Metastasis suppressor p 39.2 2.4E+02 0.0083 26.4 10.7 50 241-290 140-194 (253)
60 1ci6_A Transcription factor AT 38.6 61 0.0021 24.3 5.4 36 155-190 25-60 (63)
61 2wt7_A Proto-oncogene protein 38.3 81 0.0028 23.5 6.0 38 153-190 23-60 (63)
62 3ghg_A Fibrinogen alpha chain; 38.2 45 0.0015 35.1 6.0 77 245-329 88-164 (562)
63 1t2k_D Cyclic-AMP-dependent tr 36.6 79 0.0027 23.2 5.6 35 155-189 24-58 (61)
64 1ic2_A Tropomyosin alpha chain 36.6 1.4E+02 0.005 22.9 9.7 54 132-185 13-66 (81)
65 2er8_A Regulatory protein Leu3 34.9 23 0.00077 25.7 2.4 26 228-253 45-70 (72)
66 1lrz_A FEMA, factor essential 32.9 1.3E+02 0.0044 28.6 7.8 27 229-255 244-270 (426)
67 1fxk_C Protein (prefoldin); ar 32.4 2E+02 0.0068 23.2 9.8 79 11-89 16-129 (133)
68 3i00_A HIP-I, huntingtin-inter 31.8 1.3E+02 0.0043 25.6 6.8 64 17-86 15-78 (120)
69 1p9i_A Cortexillin I/GCN4 hybr 31.5 45 0.0015 23.0 3.2 24 231-254 5-28 (31)
70 2pms_C Pneumococcal surface pr 30.5 1.5E+02 0.0053 25.7 7.2 98 143-282 10-122 (125)
71 1m1j_C Fibrinogen gamma chain; 30.0 2.9E+02 0.0099 27.6 10.1 46 221-266 14-65 (409)
72 3abf_A 4-oxalocrotonate tautom 30.0 49 0.0017 22.8 3.4 28 205-232 33-60 (64)
73 3u1c_A Tropomyosin alpha-1 cha 29.6 2.2E+02 0.0076 22.9 9.2 66 13-88 5-70 (101)
74 3vmx_A Voltage-gated hydrogen 29.5 62 0.0021 24.3 4.0 26 11-36 12-37 (48)
75 1ic2_A Tropomyosin alpha chain 28.6 2E+02 0.0069 22.1 9.0 65 14-88 3-67 (81)
76 1a93_B MAX protein, coiled coi 28.3 57 0.0019 23.1 3.4 23 155-177 9-31 (34)
77 1f5n_A Interferon-induced guan 28.3 2.1E+02 0.0072 29.4 9.0 55 114-168 463-523 (592)
78 3m91_A Proteasome-associated A 28.0 1.8E+02 0.0063 21.6 6.3 42 152-193 8-49 (51)
79 1g6u_A Domain swapped dimer; d 27.6 51 0.0017 24.5 3.2 24 233-256 21-44 (48)
80 3t98_B Nucleoporin NUP58/NUP45 27.2 2.2E+02 0.0076 23.1 7.3 56 144-199 10-73 (93)
81 2l5g_B Putative uncharacterize 27.2 53 0.0018 24.2 3.2 23 234-256 11-33 (42)
82 1sig_A Sigma70, RNA polymerase 27.0 1.7E+02 0.0057 26.9 7.3 67 11-77 156-241 (339)
83 3m21_A Probable tautomerase HP 26.7 57 0.002 23.3 3.4 28 204-232 34-62 (67)
84 1hjb_A Ccaat/enhancer binding 26.6 1.5E+02 0.005 24.1 6.0 33 146-178 36-68 (87)
85 1gu4_A CAAT/enhancer binding p 26.5 1.4E+02 0.0049 23.6 5.9 34 146-179 36-69 (78)
86 1jnm_A Proto-oncogene C-JUN; B 26.4 65 0.0022 23.8 3.7 35 154-188 23-57 (62)
87 2dq0_A Seryl-tRNA synthetase; 26.1 2E+02 0.0069 28.5 8.2 23 14-36 42-64 (455)
88 4avm_A Bridging integrator 2; 26.0 3.5E+02 0.012 24.1 13.4 27 11-37 34-60 (237)
89 3d5a_X RF1, peptide chain rele 25.1 1.3E+02 0.0044 29.8 6.5 90 145-259 2-96 (354)
90 3q8t_A Beclin-1; autophagy, AT 25.0 2.7E+02 0.0093 22.4 13.1 35 132-166 46-80 (96)
91 3u59_A Tropomyosin beta chain; 24.1 2.7E+02 0.0093 22.1 9.2 52 133-184 17-68 (101)
92 3viq_B Mating-type switching p 23.6 81 0.0028 25.8 4.0 32 12-43 3-34 (85)
93 1otf_A 4-oxalocrotonate tautom 23.6 56 0.0019 22.2 2.7 28 204-231 31-58 (62)
94 1deq_A Fibrinogen (alpha chain 23.4 5.9E+02 0.02 25.8 13.6 120 58-191 63-193 (390)
95 3dxi_A Putative aldolase; TIM 22.9 78 0.0027 30.1 4.4 35 289-323 274-308 (320)
96 2e7s_A RAB guanine nucleotide 22.7 3.8E+02 0.013 23.5 8.3 33 148-180 98-130 (135)
97 2opa_A Probable tautomerase YW 22.5 81 0.0028 21.4 3.3 28 204-231 31-58 (61)
98 2lw1_A ABC transporter ATP-bin 22.2 2.8E+02 0.0095 21.5 7.4 55 16-74 21-75 (89)
99 4dzn_A Coiled-coil peptide CC- 21.9 75 0.0026 22.1 3.0 20 57-76 4-23 (33)
100 3ry0_A Putative tautomerase; o 21.6 87 0.003 22.1 3.5 30 204-233 31-60 (65)
101 3azd_A Short alpha-tropomyosin 21.2 65 0.0022 22.4 2.6 27 10-36 4-30 (37)
102 3qne_A Seryl-tRNA synthetase, 21.0 3.2E+02 0.011 27.8 8.6 23 14-36 44-66 (485)
103 2wvr_A Geminin; DNA replicatio 20.7 3.8E+02 0.013 25.2 8.3 61 144-208 113-174 (209)
104 3fhn_A Protein transport prote 20.5 2.9E+02 0.01 29.5 8.5 80 9-94 9-92 (706)
105 3ra3_A P1C; coiled coil domain 20.5 57 0.0019 22.1 2.1 22 234-255 2-23 (28)
106 2os5_A Acemif; macrophage migr 20.2 84 0.0029 24.7 3.4 27 204-230 88-114 (119)
107 1hfo_A Migration inhibitory fa 20.2 74 0.0025 24.5 3.1 26 204-229 87-112 (113)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.78 E-value=2.4 Score=40.96 Aligned_cols=62 Identities=10% Similarity=0.137 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhh
Q 013998 137 AKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQ 198 (432)
Q Consensus 137 aKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~ 198 (432)
.++..+..-+++..+++..++++..+.++|+.-..++.+.+..+.+...+...+++=|+-|.
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~ 589 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRR 589 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 33444444556666777777777777777777778888888887777777777877777665
No 2
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=89.09 E-value=1.9 Score=35.00 Aligned_cols=65 Identities=22% Similarity=0.346 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 013998 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (432)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsE 87 (432)
--++.+.+|..||.+=-.|..+|+++.- .||+ ++. .-.+.+|+.|+.++...+.+|..|.-|+..
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i~~l~~--~~~~------~~~----~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAELEQLKG--QGKS------RLG----DLYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCC------CcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999863 3443 222 125888999999999999999998887765
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=88.54 E-value=9 Score=31.31 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013998 14 ALMARIQQLEHERDELRKDIEQL 36 (432)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqL 36 (432)
.+..++..|+++.+.+...++.|
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l 25 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEA 25 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 34555666666666665555554
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=86.20 E-value=3.5 Score=44.82 Aligned_cols=13 Identities=46% Similarity=0.501 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 013998 20 QQLEHERDELRKD 32 (432)
Q Consensus 20 ~qLEhERDELrKD 32 (432)
..||..|++.-.+
T Consensus 781 ~~LE~~r~~~l~~ 793 (1184)
T 1i84_S 781 AHLEEERDLKITD 793 (1184)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555544333
No 5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=86.19 E-value=13 Score=30.46 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhh
Q 013998 233 YISALEDELEKTRSSVENLQSKLR 256 (432)
Q Consensus 233 yisaLEee~e~lr~si~~LQskLR 256 (432)
-+..+++++..++..++.+...++
T Consensus 217 ~~~~~~~~l~~l~~~~~~~~~~~~ 240 (284)
T 1c1g_A 217 KEDKYEEEIKVLSDKLKEAETRAE 240 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555543
No 6
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=85.17 E-value=8.3 Score=39.25 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=46.4
Q ss_pred hhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHH
Q 013998 230 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRL 292 (432)
Q Consensus 230 tskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i~Ngis~L~~ 292 (432)
.+||-..++..++.|++.++.|-++-.-.+++.++|+-.....+++---+...|..--..|.+
T Consensus 91 L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~ 153 (464)
T 1m1j_B 91 LLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMEL 153 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 678999999999999999999998888888888888888777766544444333333333333
No 7
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=84.97 E-value=4.7 Score=36.48 Aligned_cols=77 Identities=26% Similarity=0.312 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHH----------HHHhhhhhHHHHHHHHHHHHHhhhhhcchHH
Q 013998 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRM----------HFQRTAGLEQEIEILKQKIAACARENSNLQE 83 (432)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM----------~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQE 83 (432)
-|-.++..|+..|+.|.+|+-+|=-| |.-=.|. +--|..+|+.|++.++..+.....||..|+|
T Consensus 52 ELq~~~~~L~~~k~~Leke~~~LQa~------L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~E 125 (168)
T 3o0z_A 52 ELQERNRILENSKSQTDKDYYQLQAI------LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQD 125 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578889999999999999776443 2222222 2237889999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 013998 84 ELSEAYRIKGQLA 96 (432)
Q Consensus 84 ELsEAYRiK~qLa 96 (432)
-++.-=.-|+-+.
T Consensus 126 kl~~lEKe~a~~e 138 (168)
T 3o0z_A 126 MLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 9987655555443
No 8
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.50 E-value=13 Score=30.85 Aligned_cols=66 Identities=23% Similarity=0.319 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccc
Q 013998 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSF 225 (432)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSf 225 (432)
..+.++...+..++..+..++..|..|...++..+.+-+.-++-+
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~----------------------------------- 80 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDA----------------------------------- 80 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
Confidence 457777777788888888888888888877777655444111110
Q ss_pred cCcchhhhHHHHHHHHHHHHhhHHHH
Q 013998 226 NDTSTSKYISALEDELEKTRSSVENL 251 (432)
Q Consensus 226 n~tStskyisaLEee~e~lr~si~~L 251 (432)
-.-|+.||.++..+|..+...
T Consensus 81 -----q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 81 -----RNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHhHHHHHHHHHHH
Confidence 114788999999999887653
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.34 E-value=29 Score=33.52 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhh
Q 013998 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 183 (432)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~ 183 (432)
++..+++.++++......+.++-+..+..++..+++.+
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555566666666666666666666666666665543
No 10
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.10 E-value=32 Score=31.16 Aligned_cols=124 Identities=15% Similarity=0.219 Sum_probs=82.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhh
Q 013998 134 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCA 213 (432)
Q Consensus 134 aEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~ 213 (432)
+.|.|...-.++...+.++.-++|++..+.......+.|+.+++.+-.+.+. +-|.++..- ++
T Consensus 29 ~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q---------Er~~r~q~s-e~------- 91 (168)
T 3o0z_A 29 AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA---------ERRDRGHDS-EM------- 91 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-HH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-HH-------
Confidence 4466666667788888999999999999999999999999999999887771 111111100 00
Q ss_pred hhcccccccccccCcchhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHH
Q 013998 214 CLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLC 293 (432)
Q Consensus 214 ~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i~Ngis~L~~~ 293 (432)
+. -+---|.+|++|++.++.+..++..- =.+|+.++..|||..+-++==+.=-|..|+.-
T Consensus 92 --~~-----------elq~ri~~L~~El~~~k~~~~k~~~e-------~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~ 151 (168)
T 3o0z_A 92 --IG-----------DLQARITSLQEEVKHLKHNLEKVEGE-------RKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQR 151 (168)
T ss_dssp --HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 00 00114666777777776666665543 35899999999998887763333445556554
Q ss_pred H
Q 013998 294 H 294 (432)
Q Consensus 294 h 294 (432)
|
T Consensus 152 ~ 152 (168)
T 3o0z_A 152 L 152 (168)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=80.54 E-value=24 Score=29.42 Aligned_cols=108 Identities=21% Similarity=0.296 Sum_probs=63.3
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHH
Q 013998 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAE 135 (432)
Q Consensus 56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaE 135 (432)
-.+.++.+|..|+.++.........|.+.....--=|..|... +. +|+++. -++
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~q--------------L~----------~E~~~l-~e~- 67 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQ--------------VQ----------AEQDNL-ADA- 67 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH----------HHHHHH-HHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH----------HHHHHH-HhH-
Confidence 4456788888888887766666555555544433333333322 11 233331 122
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHH
Q 013998 136 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191 (432)
Q Consensus 136 KaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~ 191 (432)
.++-+.+...-.+++..+.++++.+.+....|..|+..-.++..+...+.+-|+
T Consensus 68 --EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 68 --EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244445555556677777777777777777777777777777666665555444
No 12
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=80.38 E-value=5.7 Score=33.34 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013998 11 ESEALMARIQQLEHERDELRKDIEQLCMQ 39 (432)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQ 39 (432)
....+..+|..|+.||+.|++.|+.|=|+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999988774
No 13
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.27 E-value=15 Score=30.72 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccc
Q 013998 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSF 225 (432)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSf 225 (432)
..+.++..++..++..+..++..+..|...++..+.+-+.-++-
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~------------------------------------ 81 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQ------------------------------------ 81 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH------------------------------------
Confidence 45777777777788888888888888877777665544411110
Q ss_pred cCcchhhhHHHHHHHHHHHHhhHHHH
Q 013998 226 NDTSTSKYISALEDELEKTRSSVENL 251 (432)
Q Consensus 226 n~tStskyisaLEee~e~lr~si~~L 251 (432)
.-.-|+.||.++..+|..+...
T Consensus 82 ----~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 82 ----IQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHH
Confidence 0114788999999999887653
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=80.01 E-value=19 Score=39.42 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=1.5
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 013998 58 AGLEQEIEILKQKIAACARENSNLQEELSE 87 (432)
Q Consensus 58 A~LEQeIE~Lkkkl~~c~rEn~nLQEELsE 87 (432)
..||..|+.|+.+|..-..+|..|++++..
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~ 953 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953 (1080)
T ss_dssp ---------------------------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888999999999989999999988653
No 15
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=79.16 E-value=9.1 Score=30.15 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchH----HHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcc
Q 013998 13 EALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYL----AVATRMHFQRTAGLEQEIEILKQKIAACARENSN 80 (432)
Q Consensus 13 esl~aRI~qLEhERDELrKDIEqL--------CMQQaGpgyl----~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~n 80 (432)
..+..+|.+|+.+..++..=++.| |.-.-||-|| +-|.-.+..|...++.+|+.|.+++..+..+=..
T Consensus 23 ~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~ 102 (117)
T 2zqm_A 23 QLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKE 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655544444 7778888775 4577788999999999999999999888777777
Q ss_pred hHHHHHHHH
Q 013998 81 LQEELSEAY 89 (432)
Q Consensus 81 LQEELsEAY 89 (432)
|+..|-+.+
T Consensus 103 lk~~l~~~~ 111 (117)
T 2zqm_A 103 LTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666554
No 16
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=77.36 E-value=30 Score=28.73 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 013998 60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQ 112 (432)
Q Consensus 60 LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~Ekq 112 (432)
.+.+|+.|++++...+.+|-.|+-|+..+...=..+-.-|..|+.+...+|.+
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~d 70 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENT 70 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 47789999999999999999998887765322222222244555555555543
No 17
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=77.07 E-value=6.8 Score=31.22 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhhhHHHHHHHHHHHHhhHHHHhh
Q 013998 188 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 253 (432)
Q Consensus 188 kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQs 253 (432)
++=+.|..+|.-.+.+.+-+-..|.++| +.+..||..|+.+...+...++.|+.
T Consensus 20 ~ln~~f~~Lr~~vP~~~~~~K~sK~~iL------------~~A~~YI~~L~~~~~~l~~~~~~L~~ 73 (88)
T 1nkp_A 20 ELKRSFFALRDQIPELENNEKAPKVVIL------------KKATAYILSVQAEEQKLISEEDLLRK 73 (88)
T ss_dssp HHHHHHHHHHTTCGGGTTCTTCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999877766443444555554 23556999999999988888776553
No 18
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=74.62 E-value=88 Score=34.41 Aligned_cols=14 Identities=50% Similarity=0.835 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 013998 25 ERDELRKDIEQLCM 38 (432)
Q Consensus 25 ERDELrKDIEqLCM 38 (432)
|..+|++|++.|-.
T Consensus 961 e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 961 ETEKLRSDVERLRM 974 (1080)
T ss_dssp HHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 19
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=72.67 E-value=51 Score=29.19 Aligned_cols=121 Identities=17% Similarity=0.279 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHH
Q 013998 60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKE 139 (432)
Q Consensus 60 LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~AFAERD~slmEaEKaKE 139 (432)
+|.+++.-..++.....-...|.++|--+-+--..|----...-.+-...|.++++.+... -||| -
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kL-----------KEAE---~ 91 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKL-----------KEAE---T 91 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHH-----------HHHH---H
Confidence 8888888888888888777788888876664333343333344445556677777766443 2222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHh
Q 013998 140 KEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIR 197 (432)
Q Consensus 140 ~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR 197 (432)
+.+..-..++.++.-+..++-.+...|.-+..++.+|..--.. +..+--+||.+-
T Consensus 92 RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~e---l~~~~~~~~~~~ 146 (155)
T 2efr_A 92 RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDK---VEELLSKNYHLE 146 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccchHHHH
Confidence 2223334445555555555555555666666666555532111 223455666653
No 20
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=72.65 E-value=57 Score=29.78 Aligned_cols=55 Identities=33% Similarity=0.385 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013998 233 YISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHV 301 (432)
Q Consensus 233 yisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i~Ngis~L~~~h~~~R~~I 301 (432)
-|++|+.++..++...+ .|++++|.||..+--+..=.|+-.+.|.-+.+.+=.-|
T Consensus 89 ~~~~Lq~el~~l~~~~~--------------~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~ai 143 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKE--------------QLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAI 143 (189)
T ss_dssp HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 58888888888876554 45566777777777777667777777777666654444
No 21
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=72.34 E-value=14 Score=28.72 Aligned_cols=75 Identities=15% Similarity=0.235 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchH----HHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhc
Q 013998 12 SEALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYL----AVATRMHFQRTAGLEQEIEILKQKIAACARENS 79 (432)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqL--------CMQQaGpgyl----~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~ 79 (432)
...+...+++|+.+..++..=++.| |.-..||-|| +-|.-.+..|...++.+|+.|.+++..+..+=.
T Consensus 17 ~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~ 96 (107)
T 1fxk_A 17 AQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQ 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777666655433333 8888998875 457788899999999999999998887776666
Q ss_pred chHHHHH
Q 013998 80 NLQEELS 86 (432)
Q Consensus 80 nLQEELs 86 (432)
.|+..|-
T Consensus 97 ~lk~~l~ 103 (107)
T 1fxk_A 97 EMQVNIQ 103 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=67.87 E-value=30 Score=29.74 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=15.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 013998 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSEN 162 (432)
Q Consensus 132 mEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~ 162 (432)
|+.+.++..-+..-.+++.++.++.++++.+
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444455555555555555444
No 23
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=66.86 E-value=19 Score=29.62 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHH--------hhhhhHHHHHHHHHHHHHhhhhhcchH
Q 013998 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQ--------RTAGLEQEIEILKQKIAACARENSNLQ 82 (432)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~Q--------RtA~LEQeIE~Lkkkl~~c~rEn~nLQ 82 (432)
.+=++..|.+.|++..++|.+||++-=-+.-| .++|+-- =...++++|..+.++|..+-.
T Consensus 9 s~LPpeqRkkkL~~Ki~el~~ei~ke~~~reg------l~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~------ 76 (98)
T 2ke4_A 9 SHLPPEQQRKRLQQQLEERSRELQKEVDQREA------LKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKL------ 76 (98)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTH------HHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHH------
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHH------
Confidence 34467899999999999999999997655444 2333211 112235555555555443322
Q ss_pred HHHHHHHHHHHHHHHH
Q 013998 83 EELSEAYRIKGQLADL 98 (432)
Q Consensus 83 EELsEAYRiK~qLadL 98 (432)
+.|++...|+++
T Consensus 77 ----el~K~q~~L~e~ 88 (98)
T 2ke4_A 77 ----EVQKYEAWLAEA 88 (98)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHH
Confidence 456777777776
No 24
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=66.00 E-value=9.6 Score=36.17 Aligned_cols=50 Identities=24% Similarity=0.245 Sum_probs=35.0
Q ss_pred ccCCchHHHHHHHHHHHHHHHhhcHHHHHHHHHHhhhHHHHHHHHHHHHhhhhc
Q 013998 378 RKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQV 431 (432)
Q Consensus 378 ~~~d~S~alaqalqEK~~ALlL~SQqeER~llE~~~n~~lq~~ieeLQrNl~Qv 431 (432)
|+-++.+|| ..+++++.++|==...+. =-+|++..||+++.++|+|+.|+
T Consensus 367 G~~t~eeal-~~~~~~i~~~l~~~~~~~---e~~~~~~~~~~~~~~~~~~~~~~ 416 (471)
T 3mq9_A 367 GRQTVDEAL-KDAQTRITAARDGLRAVM---EARNVTHLLQQELTEAQKGFQDV 416 (471)
T ss_dssp SSSCHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHH-HHHHHHHHHHHHhhHHHH---HhhhHHHHHHHHHHHHhhhHHHH
Confidence 445555555 566788887763222221 23599999999999999999986
No 25
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=64.90 E-value=9.1 Score=29.90 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhhhHHHHHHHHHHHHhhHHHHhhhh
Q 013998 189 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (432)
Q Consensus 189 Vi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskL 255 (432)
+=+.|.++|.-.+.| -+-.+|+++| ..|..||..|..++..|......|+..+
T Consensus 21 in~~f~~L~~lvP~~--~~k~~Ka~IL------------~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 21 INDKIIELKDLVVGT--EAKLNKSAVL------------RKAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHTCS--SCCCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC--CCCCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335677777755443 1233455444 2356799999999999999888887644
No 26
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=64.40 E-value=47 Score=25.66 Aligned_cols=84 Identities=8% Similarity=0.164 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhccccccc
Q 013998 143 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEM 222 (432)
Q Consensus 143 ~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~ 222 (432)
.++.+|+.++.++..+.+.+...+ .++... ..|++ +-..+..+.+|--++++.-.
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~-------~~~~e~-------~~~~~----------EL~~l~~d~~vy~~iG~vfv- 59 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVE-------MQINET-------QKALE----------ELSRAADDAEVYKSSGNILI- 59 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHH----------HHHHSCTTCCEEEEETTEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHH----------HHHcCCCCchHHHHHhHHHH-
Confidence 466788888888887766653332 222222 12222 11223334455555443322
Q ss_pred ccccCcchhhhHHHHHHHHHHHHhhHHHHhhhh
Q 013998 223 WSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (432)
Q Consensus 223 WSfn~tStskyisaLEee~e~lr~si~~LQskL 255 (432)
..+....+..|++.++.+...|+.|..++
T Consensus 60 ----~~~~~e~~~~L~~~~e~i~~~i~~le~~~ 88 (107)
T 1fxk_A 60 ----RVAKDELTEELQEKLETLQLREKTIERQE 88 (107)
T ss_dssp ----EECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777766654
No 27
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=64.24 E-value=24 Score=35.68 Aligned_cols=54 Identities=13% Similarity=0.238 Sum_probs=35.2
Q ss_pred HHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013998 250 NLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVN 303 (432)
Q Consensus 250 ~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i~Ngis~L~~~h~~~R~~Im~ 303 (432)
.|..++...-..||-...-...||++++++..-|.+-|..|+-+-.-.|+...+
T Consensus 96 ~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~k 149 (390)
T 1deq_A 96 LMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVD 149 (390)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334444455556666666667888888888888888877776665554444433
No 28
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=63.18 E-value=53 Score=34.46 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=31.9
Q ss_pred HHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh----------hHHHHHhhhhhhh
Q 013998 72 AACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQG----------CMAAAFAERDNSV 131 (432)
Q Consensus 72 ~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs----------~VA~AFAERD~sl 131 (432)
...-|++.-.+.||.+|- +. -.-++...-|-|+||+| .||.|.|++|+-.
T Consensus 317 ~~Aer~~e~a~ael~~a~-------k~---~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~ 376 (551)
T 2b5u_A 317 EAAERNYERARAELNQAN-------ED---VARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFN 376 (551)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhh
Confidence 445555555666666551 11 12233345688899999 9999999998743
No 29
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=62.31 E-value=21 Score=30.58 Aligned_cols=66 Identities=24% Similarity=0.304 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCchHHHhhHHHHHhhh--hhHHHHHHHHHHHHHhhhhhcch
Q 013998 12 SEALMARIQQLEHERDELRKDIEQLCM--QQAGPSYLAVATRMHFQRTA--GLEQEIEILKQKIAACARENSNL 81 (432)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCM--QQaGpgyl~vATRM~~QRtA--~LEQeIE~Lkkkl~~c~rEn~nL 81 (432)
.+.-+..|..|..|...+++|+|++=| ||+- .| -...++.|++ .+-.+++.|+.+|+...|.|..|
T Consensus 40 L~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~-IY---~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 40 LVAKQELIDKLKEEAEQHKIVMETVPVLKAQAD-IY---KADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 344566777788888888899998877 5653 23 3456777876 37888999999999888888765
No 30
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=61.81 E-value=59 Score=27.57 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=51.0
Q ss_pred HhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhH
Q 013998 124 FAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (432)
Q Consensus 124 FAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e 184 (432)
--|+-+-+-+++-.|-+=|.|-..++++....+|..+.+..+|+..+.|+.++..++++..
T Consensus 22 DNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 22 DNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445567888888888888889999999999999999999999999999999887654
No 31
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=61.53 E-value=31 Score=27.15 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=27.6
Q ss_pred HHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 013998 37 CMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELS 86 (432)
Q Consensus 37 CMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELs 86 (432)
|.|.-.|.+..-.-.-+-.+...+..+|..|+.++..+.++-..|..++.
T Consensus 53 Cgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 53 CGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433222234445566666677777777776666655555555
No 32
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=61.16 E-value=20 Score=26.52 Aligned_cols=40 Identities=30% Similarity=0.503 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhHHHHhhhhh-hhHHH---HHHhHHhHHHHHHh
Q 013998 236 ALEDELEKTRSSVENLQSKLR-MGLEI---ENHLKKSVRELEKK 275 (432)
Q Consensus 236 aLEee~e~lr~si~~LQskLR-~glEI---EnHLkk~~r~lEkk 275 (432)
.|||-++.+.+++|.||.|+- .=-|. ...||.++-.||++
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999999999999873 32233 35788888888864
No 33
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=61.04 E-value=2.4e+02 Score=35.03 Aligned_cols=93 Identities=6% Similarity=0.142 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccc--
Q 013998 144 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAE-- 221 (432)
Q Consensus 144 m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~-- 221 (432)
.-+++++++.++.+|+....+..+-...|+.+...-+...+...+.|...=.=+.|=.+. --++...-..|..|...
T Consensus 2033 ~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~-~~~l~~~~~~L~GD~LLaa 2111 (3245)
T 3vkg_A 2033 IVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ-SENFNTQMSTVVGDVVLAS 2111 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH-HHHHHHHHHhccHHHHHHH
Confidence 344555555555555555555555555566665555555555555655433222221111 11223333445555322
Q ss_pred -cccccCcchhhhHHHH
Q 013998 222 -MWSFNDTSTSKYISAL 237 (432)
Q Consensus 222 -~WSfn~tStskyisaL 237 (432)
-=||.|+=|..|=..|
T Consensus 2112 afisY~G~f~~~~R~~l 2128 (3245)
T 3vkg_A 2112 AFLAYIGFFDQNFRTDL 2128 (3245)
T ss_dssp HHHHTGGGSCHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHH
Confidence 2456677777775544
No 34
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=60.79 E-value=12 Score=28.79 Aligned_cols=52 Identities=12% Similarity=0.298 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhhhHHHHHHHHHHHHhhHHHHhh
Q 013998 189 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 253 (432)
Q Consensus 189 Vi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQs 253 (432)
+=..|.++|.-.+.+.+ +--.|.++| ..+..||..|++++..|...++.|+.
T Consensus 27 in~~f~~Lr~lvP~~~~-~k~sK~~iL------------~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 27 IKDSFHSLRDSVPSLQG-EKASRAQIL------------DKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHSGGGTT-SCCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHCcCCCC-CCccHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567778876665532 112333333 24677999999999999999988863
No 35
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=60.33 E-value=15 Score=28.27 Aligned_cols=53 Identities=11% Similarity=0.302 Sum_probs=33.8
Q ss_pred HHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhhhHHHHHHHHHHHHhhHHHHhhh
Q 013998 189 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSK 254 (432)
Q Consensus 189 Vi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQsk 254 (432)
+=+.|.++|.-.+.|.+ +--.|.++| ..+..||..|.+++..+...++.|...
T Consensus 17 in~~f~~Lr~lvP~~~~-~k~sK~~iL------------~~Ai~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 17 IKDSFHSLRDSVPSLQG-EKASRAQIL------------DKATEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHTTSGGGTT-SCCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCC-CCCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888886665532 112333333 246779999999888888777766543
No 36
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=60.26 E-value=59 Score=25.40 Aligned_cols=85 Identities=13% Similarity=0.234 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccc
Q 013998 142 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAE 221 (432)
Q Consensus 142 e~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~ 221 (432)
..++.+|+.++.++..+.+.+...+ .++... ..|++ +-..+..+.+|-.++.+.-.
T Consensus 9 Q~~i~~~~~l~~~~~~l~~q~~~l~-------~~~~e~-------~~~~~----------eL~~l~~d~~vy~~iG~vfv 64 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQLVVQQKQKVQ-------LELTEA-------KKALD----------EIESLPDDAVVYKTVGTLIV 64 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHH----------HHHTSCTTCCEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHH----------HHHcCCCCcHhHHHhhHHHh
Confidence 3566778888888887766664332 222222 12332 11223334455555553322
Q ss_pred cccccCcchhhhHHHHHHHHHHHHhhHHHHhhhh
Q 013998 222 MWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (432)
Q Consensus 222 ~WSfn~tStskyisaLEee~e~lr~si~~LQskL 255 (432)
-.+....+..|++.++.+...|+.|..++
T Consensus 65 -----~~~~~ea~~~L~~~~e~ie~~i~~le~~~ 93 (117)
T 2zqm_A 65 -----KTTKDKAVAELKEKIETLEVRLNALERQE 93 (117)
T ss_dssp -----EECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777777776654
No 37
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=59.54 E-value=10 Score=29.66 Aligned_cols=32 Identities=34% Similarity=0.675 Sum_probs=26.4
Q ss_pred cchHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcC
Q 013998 10 NESEALMARIQQLEHERD----ELRKDIEQLCMQQAG 42 (432)
Q Consensus 10 ~~~esl~aRI~qLEhERD----ELrKDIEqLCMQQaG 42 (432)
.+.+....++..||.||| .|| |||-||-+.-|
T Consensus 16 ~Ekdna~e~~e~lE~ERdFYf~KLR-diE~l~q~~e~ 51 (75)
T 3mtu_A 16 LDKENALDRAEQAEADKDFYFGKLR-NIELICQENEG 51 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHh
Confidence 356778899999999999 775 89999987554
No 38
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=59.30 E-value=5.1 Score=27.97 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhHHHHhhhh
Q 013998 234 ISALEDELEKTRSSVENLQSKL 255 (432)
Q Consensus 234 isaLEee~e~lr~si~~LQskL 255 (432)
||.|||++..|.+-+.+||.++
T Consensus 1 isrlee~~r~l~~ivq~lq~r~ 22 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERL 22 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999888887654
No 39
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=58.09 E-value=35 Score=35.03 Aligned_cols=111 Identities=14% Similarity=0.201 Sum_probs=75.6
Q ss_pred hhhhcccccccccccCc------chhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHH
Q 013998 212 CACLLLDSAEMWSFNDT------STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISN 285 (432)
Q Consensus 212 c~~Ll~ds~~~WSfn~t------StskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i~N 285 (432)
..|+..| .++.+|+-| -.+||-......+..|++.|+.+-|.=.-..++-++||-..+.-++...=.|.++.+
T Consensus 63 g~c~~~~-~~fG~yCPTtCglad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~ 141 (461)
T 3ghg_B 63 GGCLHAD-PDLGVLCPTGCQLQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNE 141 (461)
T ss_dssp CCCBCSS-TTTCBCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCccccC-cccCCcCCCcchHHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHH
Confidence 3444444 457888843 589999999999999999999999999999999999998877776655544555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHhhh
Q 013998 286 AIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKT 323 (432)
Q Consensus 286 gis~L~~~h~~~R~~Im~lL~e~~s~iks~~~~i~ek~ 323 (432)
-=+.|.+.|.....-+..-.+..=-.|.++++.+..||
T Consensus 142 s~~mle~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i 179 (461)
T 3ghg_B 142 YSSELEKHQLYIDETVNSNIPTNLRVLRSILENLRSKI 179 (461)
T ss_dssp HHHHHHHHHTHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHH
Confidence 55556666655443333333333344555666666665
No 40
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=57.94 E-value=8.9 Score=27.57 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.8
Q ss_pred hhhhHHHHHHHHHHHHhhHHHHhhhhh
Q 013998 230 TSKYISALEDELEKTRSSVENLQSKLR 256 (432)
Q Consensus 230 tskyisaLEee~e~lr~si~~LQskLR 256 (432)
+.+||..||..+..|...|..|++.|.
T Consensus 42 ~~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 42 STKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999999999988663
No 41
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=56.97 E-value=34 Score=27.22 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHH
Q 013998 63 EIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAA 123 (432)
Q Consensus 63 eIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~VA~A 123 (432)
||+.|+.++...+.+|..|.-|+-.+.-.=..+-.-|..|+.+...+|..+.=+..-|=.|
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a 61 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA 61 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4788999999999999998888776432211222225567777777776665554444333
No 42
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=52.94 E-value=4.2e+02 Score=33.01 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=18.0
Q ss_pred HHHhhHHHHHhhhhhHHHHHHHHH
Q 013998 46 LAVATRMHFQRTAGLEQEIEILKQ 69 (432)
Q Consensus 46 l~vATRM~~QRtA~LEQeIE~Lkk 69 (432)
|.....|+.++...++..++.|+.
T Consensus 1901 i~~y~~ll~~K~~el~~~~~rl~~ 1924 (3245)
T 3vkg_A 1901 INQVVLLINEKRDQLEEEQLHLNI 1924 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888887777764
No 43
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=50.33 E-value=19 Score=28.23 Aligned_cols=56 Identities=16% Similarity=0.111 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhhhHHHHHHHHHHHHhhHHHHhhhh
Q 013998 188 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (432)
Q Consensus 188 kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskL 255 (432)
++=+.|+.+|...+.+.+.+-..|-++| . ....||..|+++...+...++.|+...
T Consensus 15 ~lk~~f~~Lr~~vP~~~~~~k~sk~~iL-~-----------kA~~yI~~L~~~~~~l~~e~~~L~~e~ 70 (80)
T 1nlw_A 15 HLRLSLEKLKGLVPLGPDSSRHTTLSLL-T-----------KAKLHIKKLEDSDRKAVHQIDQLQREQ 70 (80)
T ss_dssp HHHHHHHHHHHSSCCCSSSCCCTTHHHH-H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCHHHHH-H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788898866654332222232222 2 244699999999988888877766543
No 44
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=50.19 E-value=1.2e+02 Score=25.98 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=24.3
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 013998 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (432)
Q Consensus 56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL 98 (432)
|-.+||++++.|.+ .|++-+.+|=.+|=.-...|++.
T Consensus 10 ~l~~Leae~q~L~~------~E~qry~~eka~AE~A~~~La~~ 46 (119)
T 3etw_A 10 ELQALDAEYQNLAN------QEEARFNEERAQADAARQALAQN 46 (119)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777776 56666666666666666666655
No 45
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=49.09 E-value=1.5e+02 Score=26.69 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 013998 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (432)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEA 88 (432)
.+-.+|..|+|.|.+|.+.|+.| -...+++...++.++..+....++-..+..++..+
T Consensus 15 ~lD~~i~~l~~~~~~lp~el~~l-----------------e~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~ 72 (256)
T 3na7_A 15 HLDKEIDSLEPLIREKRKDLDKA-----------------LNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDT 72 (256)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666665555433 23445666666666666666666666666665554
No 46
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=47.96 E-value=34 Score=27.55 Aligned_cols=41 Identities=29% Similarity=0.474 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhHHHHhhhhh-hhHHH---HHHhHHhHHHHHHhh
Q 013998 236 ALEDELEKTRSSVENLQSKLR-MGLEI---ENHLKKSVRELEKKI 276 (432)
Q Consensus 236 aLEee~e~lr~si~~LQskLR-~glEI---EnHLkk~~r~lEkkq 276 (432)
.||+-++.|.++++.||.|+- +=-|. .+.||.|+-.||++-
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~ 48 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFL 48 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999873 32233 356777777777743
No 47
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=47.19 E-value=53 Score=25.83 Aligned_cols=25 Identities=12% Similarity=0.305 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHhhHHHHhhhhh
Q 013998 232 KYISALEDELEKTRSSVENLQSKLR 256 (432)
Q Consensus 232 kyisaLEee~e~lr~si~~LQskLR 256 (432)
..|+..+.++..+++.+..|...+.
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~ 88 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKS 88 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666665543
No 48
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=44.99 E-value=89 Score=26.78 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=17.5
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 013998 57 TAGLEQEIEILKQKIAACARENSNLQEELS 86 (432)
Q Consensus 57 tA~LEQeIE~Lkkkl~~c~rEn~nLQEELs 86 (432)
...+.++++.|++++..+.+++..|+-+|-
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666655543
No 49
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=44.41 E-value=49 Score=25.07 Aligned_cols=39 Identities=23% Similarity=0.470 Sum_probs=33.6
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013998 268 SVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLE 306 (432)
Q Consensus 268 ~~r~lEkkq~~~d~~i~Ngis~L~~~h~~~R~~Im~lL~ 306 (432)
.+.+|+.+-+..|..|.--|.+|+.-|...|.-|...++
T Consensus 11 s~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRqPIldAi~ 49 (51)
T 2jo8_A 11 TVEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDAIE 49 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHccHHHHHHHHHHHHHHHHhHhhHHHHHh
Confidence 345677777899999999999999999999999988776
No 50
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=44.14 E-value=2.5e+02 Score=28.24 Aligned_cols=118 Identities=14% Similarity=0.258 Sum_probs=69.2
Q ss_pred cccccccCc------chhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHh-------------------HHHHHH
Q 013998 220 AEMWSFNDT------STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKS-------------------VRELEK 274 (432)
Q Consensus 220 ~~~WSfn~t------StskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~-------------------~r~lEk 274 (432)
.++.+|+-| -.+||-......+..|+..|+.+-|.=.-..+.=++||-. -..||+
T Consensus 13 ~~fG~~CPTtCgl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~ 92 (411)
T 3ghg_C 13 ERFGSYCPTTCGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEE 92 (411)
T ss_dssp -CCSCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHH
T ss_pred cccCCcCCCcchHHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHH
Confidence 356777743 4788988888888888888888877666666655555543 234555
Q ss_pred hhhhhHHHH---HHHHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHhhh-hccccccccCccccccccccccccccc
Q 013998 275 KIIHSDKFI---SNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKT-QHCDDVIRGQNTGTYQRETKLDEFECR 350 (432)
Q Consensus 275 kq~~~d~~i---~Ngis~L~~~h~~~R~~Im~lL~e~~s~iks~~~~i~ek~-~~~~n~~~e~n~~~p~~~~~~~e~ecr 350 (432)
+..+ +.+| ..-|..|+......+..| ..|+..|..+..+. +-|.+++. ..+ .-...|.
T Consensus 93 ~~~~-~~~~~~~~~~i~~l~~~~~~~~~~i--------~~L~~~v~~l~~~~~~~~~~~~~-------~~~--~~~~dC~ 154 (411)
T 3ghg_C 93 IMKY-EASILTHDSSIRYLQEIYNSNNQKI--------VNLKEKVAQLEAQCQEPCKDTVQ-------IHD--ITGKDCQ 154 (411)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTTSCSCCEESCC-------CCS--CCBSSHH
T ss_pred HHHH-HHHHHhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcccCCcccc-------cCc--CCCCCHH
Confidence 5544 4444 445666666555554444 44556666666665 33433311 111 1235788
Q ss_pred ccccc
Q 013998 351 DVHIN 355 (432)
Q Consensus 351 DvHvs 355 (432)
|+...
T Consensus 155 ~i~~~ 159 (411)
T 3ghg_C 155 DIANK 159 (411)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 88753
No 51
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=43.66 E-value=90 Score=25.91 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=29.7
Q ss_pred hhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhH
Q 013998 125 AERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDL 176 (432)
Q Consensus 125 AERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl 176 (432)
.|||..+-.|=+++.--+..-.++.++..++.+.++.+.+..+.|..||++.
T Consensus 4 ~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~ 55 (125)
T 1joc_A 4 DERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKH 55 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 3555555444444433334445666666667666666666666666666553
No 52
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=42.95 E-value=45 Score=35.10 Aligned_cols=64 Identities=9% Similarity=0.065 Sum_probs=35.2
Q ss_pred HHHHHHhHHhHHHHHHhhhhhHHH--HHHHHH-HHHHHHHHHHHHHHHhhhhccchhhhhHHHHHhhh
Q 013998 259 LEIENHLKKSVRELEKKIIHSDKF--ISNAIA-ELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKT 323 (432)
Q Consensus 259 lEIEnHLkk~~r~lEkkq~~~d~~--i~Ngis-~L~~~h~~~R~~Im~lL~e~~s~iks~~~~i~ek~ 323 (432)
-+|+++.+.....|.+++...... ..|-|+ +|++.|...+..|-+-+ .--.-|.++|..+--||
T Consensus 81 Kdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl-snIrvLQsnLedq~~kI 147 (562)
T 3ghg_A 81 KDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDM 147 (562)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 356666666666665555444321 334455 67777777777776665 23344445555544444
No 53
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=42.41 E-value=64 Score=32.29 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhhhccchhhhhHHHHHhhh-hc
Q 013998 293 CHSQLRVHVVNSLEEGRSHIKSISDVIEEKT-QH 325 (432)
Q Consensus 293 ~h~~~R~~Im~lL~e~~s~iks~~~~i~ek~-~~ 325 (432)
++---|..+-.||..+.+.+|..|-.|-++| .+
T Consensus 300 ~~K~vK~Nas~il~~~~~~~k~~v~~iN~~L~~L 333 (355)
T 3etv_A 300 FTKFVKNNASIILESLDSPLKNLVSVINNKLTRL 333 (355)
T ss_dssp HHHHHHHTHHHHTSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHhCCCCchHHHHHHHHHHHHHHH
Confidence 3344567777889999888999999999988 55
No 54
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=41.74 E-value=1.3e+02 Score=25.57 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhH
Q 013998 107 MEAEKQVKFFQGCMAAAFAERDNSVMEAEKAK 138 (432)
Q Consensus 107 ~e~EkqVkFfQs~VA~AFAERD~slmEaEKaK 138 (432)
.+||.++.+...+ ++.++.|++..+
T Consensus 50 ~~Le~eL~e~r~~-------~q~a~~e~e~Lr 74 (120)
T 3i00_A 50 SELEADLAEQQHL-------RQQAADDCEFLR 74 (120)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3445555555443 667777777665
No 55
>3ssb_C IMPI alpha, inducible metalloproteinase inhibitor protein; thermolysin fold - family I8 fold, metalloprotease thermoLys inhibitor; 1.80A {Galleria mellonella}
Probab=41.43 E-value=8.8 Score=27.91 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=13.0
Q ss_pred cccccccccccccCCC
Q 013998 344 LDEFECRDVHINNDAD 359 (432)
Q Consensus 344 ~~e~ecrDvHvs~d~~ 359 (432)
-|+++|+|+|+-+...
T Consensus 20 ac~n~c~~~~~qn~t~ 35 (40)
T 3ssb_C 20 ACDNVCADLHIQNKTN 35 (40)
T ss_dssp SCCCBGGGTTTCCSSS
T ss_pred hHhhhhhhhhcccccC
Confidence 4899999999977643
No 56
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=41.40 E-value=1.6e+02 Score=30.64 Aligned_cols=151 Identities=13% Similarity=0.237 Sum_probs=80.1
Q ss_pred ccccccccCcchhhhHHHHHHHHHHHHhhHHHHhhhh-------------------------hhhHHHHHHhHHhHHHHH
Q 013998 219 SAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL-------------------------RMGLEIENHLKKSVRELE 273 (432)
Q Consensus 219 s~~~WSfn~tStskyisaLEee~e~lr~si~~LQskL-------------------------R~glEIEnHLkk~~r~lE 273 (432)
+++.|-.-=+|--.....|.+.-..++++|++|.++| ...-..||-...-...||
T Consensus 38 aDeDwGvkCPSGCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe 117 (491)
T 1m1j_A 38 VDDDWGTKCPSGCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELR 117 (491)
T ss_dssp CTTSTTTEECCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 5556655545555566666666666666666666654 233444555555566889
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHhhhhccccccccCcccccccc--------cccc
Q 013998 274 KKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRE--------TKLD 345 (432)
Q Consensus 274 kkq~~~d~~i~Ngis~L~~~h~~~R~~Im~lL~e~~s~iks~~~~i~ek~~~~~n~~~e~n~~~p~~~--------~~~~ 345 (432)
+++++++.-|.+.|..|+-+-.-.|+... .|+.+=..|.-++..|-.+-.-. +.+.-| .++.
T Consensus 118 ~ri~yIK~kVd~qi~~IrvLq~~l~~q~s--------kIQRLE~dI~~q~~~Cr~pC~r~--~~y~VD~~~Ye~~QKqLe 187 (491)
T 1m1j_A 118 RRIVTLKQRVATQVNRIKALQNSIQEQVV--------EMKRLEVDIDIKIRACKGSCARS--FDYQVDKEGYDNIQKHLT 187 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHTTTTTBSSC--CCCCCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhcchhhhh--HHhhhcHHHHHHHHHHHH
Confidence 99998888888877666655444433333 33333345566666666552110 111112 2233
Q ss_pred cccccccccccCCCCCcccCCCCCCcchhhhcccCC
Q 013998 346 EFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGE 381 (432)
Q Consensus 346 e~ecrDvHvs~d~~~~~~~k~~~p~~~~~~ad~~~d 381 (432)
--.-.|++-+.|+....+-|...-.++++ |+.|-
T Consensus 188 Qv~a~dL~p~~d~q~Lp~lKm~p~kD~~v--p~~fK 221 (491)
T 1m1j_A 188 QASSIDMHPDFQTTTLSTLKMRPLKDSNV--PEHFK 221 (491)
T ss_dssp HHTTCCCCCSCCCCCCSCCSCCCCCSTTT--TC---
T ss_pred HhhccccCCccchhhhhhhccccCCCCCC--Cchhh
Confidence 33455666666655444444433333444 44454
No 57
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=41.22 E-value=1.6e+02 Score=24.88 Aligned_cols=63 Identities=25% Similarity=0.230 Sum_probs=32.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhh----hcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 013998 53 HFQRTAGLEQEIEILKQKIAACARE----NSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKF 115 (432)
Q Consensus 53 ~~QRtA~LEQeIE~Lkkkl~~c~rE----n~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkF 115 (432)
+-.+.+.|..|.+.+|.|+....++ ...||.||....-.+..|..--+-==-+|-.+|.+-|-
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~ 74 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 3445556666666666666666554 33366666665555554442111112245556555443
No 58
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=40.36 E-value=1.4e+02 Score=24.52 Aligned_cols=64 Identities=25% Similarity=0.266 Sum_probs=32.1
Q ss_pred HHHHhhhhhhhHHHHHhHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhH
Q 013998 121 AAAFAERDNSVMEAEKAKEKEE----LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (432)
Q Consensus 121 A~AFAERD~slmEaEKaKE~Ee----~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e 184 (432)
|-+|++-|-++.|.--+=+.|= .++.++..+..-.--.+|.+.+-+..|..|..++..++++.+
T Consensus 2 ~~~~~~~~~~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 2 AMAEAEAEVTLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666767666655544432 233333333333333444455555567778888888877776
No 59
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=39.21 E-value=2.4e+02 Score=26.41 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=37.1
Q ss_pred HHHHHhhHHHHhhhhhh-----hHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHH
Q 013998 241 LEKTRSSVENLQSKLRM-----GLEIENHLKKSVRELEKKIIHSDKFISNAIAEL 290 (432)
Q Consensus 241 ~e~lr~si~~LQskLR~-----glEIEnHLkk~~r~lEkkq~~~d~~i~Ngis~L 290 (432)
+.+-..+..++|-|+|- +=.+--.|.+.+..+..++..++.|..+|+...
T Consensus 140 lkk~~~~~~k~qkK~rk~~~~gk~~~~~~l~~a~q~v~~~~~~le~~~~~~~r~A 194 (253)
T 2d1l_A 140 IKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEKQAVRKA 194 (253)
T ss_dssp HHHHHHHHHHHHHHSSCGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445788888888 345556777888889899999999999987643
No 60
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=38.61 E-value=61 Score=24.31 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=19.7
Q ss_pred HHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHH
Q 013998 155 LEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190 (432)
Q Consensus 155 ~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi 190 (432)
..+++....+++.-|+.|...+..++.++..+..+|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555666666666666555555544
No 61
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=38.31 E-value=81 Score=23.46 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=25.9
Q ss_pred HHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHH
Q 013998 153 TRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190 (432)
Q Consensus 153 ~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi 190 (432)
.++.+++......+..|..|+.++..+.++...+..++
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666667777888888877777776555554
No 62
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=38.22 E-value=45 Score=35.09 Aligned_cols=77 Identities=16% Similarity=0.301 Sum_probs=54.9
Q ss_pred HhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHhhhh
Q 013998 245 RSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQ 324 (432)
Q Consensus 245 r~si~~LQskLR~glEIEnHLkk~~r~lEkkq~~~d~~i~Ngis~L~~~h~~~R~~Im~lL~e~~s~iks~~~~i~ek~~ 324 (432)
++.++.|+.++...-+.+|....-..+||++++++..=|.|-|+-|+-+-.-.|+..++ |+.+=..|+-||+
T Consensus 88 k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~k--------IQRLEvDIdiqir 159 (562)
T 3ghg_A 88 TNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVD--------MKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 44566677788888899997777777999999999999988887777665555544444 3444455666776
Q ss_pred ccccc
Q 013998 325 HCDDV 329 (432)
Q Consensus 325 ~~~n~ 329 (432)
-|-.+
T Consensus 160 sCKgs 164 (562)
T 3ghg_A 160 SCRGS 164 (562)
T ss_dssp HGGGT
T ss_pred hcccc
Confidence 66554
No 63
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.65 E-value=79 Score=23.18 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=19.1
Q ss_pred HHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHH
Q 013998 155 LEELSSENIELKKQNATLRFDLEKQEELNESFKEV 189 (432)
Q Consensus 155 ~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kV 189 (432)
+.+++........-|..|+.++..+.+++..+..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555666666666666666544443
No 64
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=36.58 E-value=1.4e+02 Score=22.91 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=45.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHh
Q 013998 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185 (432)
Q Consensus 132 mEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~ 185 (432)
.|++.|.++-+..-+++.+.+.|....++.+...++-+..|+.|+...++....
T Consensus 13 ~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 13 LDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788888889999999999999999988888888888888888777653
No 65
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=34.87 E-value=23 Score=25.70 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=20.7
Q ss_pred cchhhhHHHHHHHHHHHHhhHHHHhh
Q 013998 228 TSTSKYISALEDELEKTRSSVENLQS 253 (432)
Q Consensus 228 tStskyisaLEee~e~lr~si~~LQs 253 (432)
+....||+.||.+++.|...|..|.+
T Consensus 45 ~~~~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 45 TYKRARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678999999999999998887654
No 66
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=32.87 E-value=1.3e+02 Score=28.63 Aligned_cols=27 Identities=15% Similarity=0.318 Sum_probs=24.4
Q ss_pred chhhhHHHHHHHHHHHHhhHHHHhhhh
Q 013998 229 STSKYISALEDELEKTRSSVENLQSKL 255 (432)
Q Consensus 229 StskyisaLEee~e~lr~si~~LQskL 255 (432)
...+|++.|+++++++.+.++++..+|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T 1lrz_A 244 NFDEYIKELNEERDILNKDLNKALKDI 270 (426)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356799999999999999999998877
No 67
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=32.35 E-value=2e+02 Score=23.22 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=57.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------------------cCCch-----HHHhhHHHHH
Q 013998 11 ESEALMARIQQLEHERDELRKDIEQLCMQQ------------------------------AGPSY-----LAVATRMHFQ 55 (432)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQ------------------------------aGpgy-----l~vATRM~~Q 55 (432)
..+.+..++.+|+....++.+=++.|-.=. -|.|| +.=|...+-.
T Consensus 16 ~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ 95 (133)
T 1fxk_C 16 QVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKS 95 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHHH
Confidence 356788888888888888887777665422 23344 2346778888
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 013998 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (432)
Q Consensus 56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY 89 (432)
|...|+..++++++.+......-..+++.|.+.+
T Consensus 96 r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 96 QKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888777777777777777665
No 68
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.77 E-value=1.3e+02 Score=25.58 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 013998 17 ARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELS 86 (432)
Q Consensus 17 aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELs 86 (432)
.-|.+|.+|-+.|+..+|.+ ++-+.|. .+.| --|...||.|++.-+....-..-||..|..|+.
T Consensus 15 ~~Ie~Lkreie~lk~ele~l-~~E~q~~----v~ql-~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENM-KTESQRV----VLQL-KGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999998 4444432 2222 346677888777776544344444554544444
No 69
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=31.53 E-value=45 Score=22.99 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHHHhhHHHHhhh
Q 013998 231 SKYISALEDELEKTRSSVENLQSK 254 (432)
Q Consensus 231 skyisaLEee~e~lr~si~~LQsk 254 (432)
...+++||.|...++++++.|-.|
T Consensus 5 nallasleaenkqlkakveellak 28 (31)
T 1p9i_A 5 NALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999988654
No 70
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=30.52 E-value=1.5e+02 Score=25.71 Aligned_cols=98 Identities=18% Similarity=0.238 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhH----------HHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchh
Q 013998 143 LMSQKFNEFQTRLEELSSENIELKKQNA----------TLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKC 212 (432)
Q Consensus 143 ~m~qk~~e~e~R~~E~~s~~~~qK~~n~----------~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc 212 (432)
..-+++++.+..+.+|++.+.+++..+. .+|.+|..-++..+.+
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeLe~l-------------------------- 63 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLSKL-------------------------- 63 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHHHHH--------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHHHHH--------------------------
Confidence 3457889999999999888888877654 2566666554444421
Q ss_pred hhhcccccccccccCcchhhhHHHHHHHHHHHHhhHHHHhhhhh-----hhHHHHHHhHHhHHHHHHhhhhhHHH
Q 013998 213 ACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLR-----MGLEIENHLKKSVRELEKKIIHSDKF 282 (432)
Q Consensus 213 ~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR-----~glEIEnHLkk~~r~lEkkq~~~d~~ 282 (432)
.-.++=|+.|..++-.+..-++++++ +| +-=-|++-|...--+|+|.|+-.|+.
T Consensus 64 ---------------eeL~~ki~eL~~kvA~le~e~~~~e~-~~~~~~~~~e~le~~la~KkAEleKtqa~Ld~a 122 (125)
T 2pms_C 64 ---------------EELSDKIDELDAEIAKLEDQLKAAEE-NNNVEDYFKEGLEKTIAAKKAELEKTEADLKKA 122 (125)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHhHHHHHHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00344455666666666666666554 33 01235777766666888888766654
No 71
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=30.02 E-value=2.9e+02 Score=27.55 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=35.7
Q ss_pred ccccccCc------chhhhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhH
Q 013998 221 EMWSFNDT------STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLK 266 (432)
Q Consensus 221 ~~WSfn~t------StskyisaLEee~e~lr~si~~LQskLR~glEIEnHLk 266 (432)
++.+++-| ..+||-..+...+..|.+.++.++|.-.-..++=+++|
T Consensus 14 ~~G~~CPT~C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq 65 (409)
T 1m1j_C 14 RFGSYCPTTCGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIK 65 (409)
T ss_dssp GGCCEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcCCCcccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677733 68999999999999999999999888776665555554
No 72
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=30.01 E-value=49 Score=22.77 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=16.6
Q ss_pred cccccchhhhhcccccccccccCcchhh
Q 013998 205 ETSWEDKCACLLLDSAEMWSFNDTSTSK 232 (432)
Q Consensus 205 ~~s~~~Kc~~Ll~ds~~~WSfn~tStsk 232 (432)
.+..+.=.-.+-+.+.++|+|+|.+.+.
T Consensus 33 g~~~~~v~V~i~e~~~~~w~~gG~~~~~ 60 (64)
T 3abf_A 33 GEPYEEVRVILYEVRRDQWAAGGVLFSD 60 (64)
T ss_dssp TCCGGGEEEEEEEECGGGEEETTEEHHH
T ss_pred CCCcccEEEEEEEcCHHHeeECCEEhHh
Confidence 3443333334445566899999986543
No 73
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=29.55 E-value=2.2e+02 Score=22.89 Aligned_cols=66 Identities=20% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 013998 13 EALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (432)
Q Consensus 13 esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEA 88 (432)
+.+..+|+.|..+-|...-..+++. .--+-.-+|...+|++|..|++|+...-.+=..+++.|.+|
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e----------~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAE----------ADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 74
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=29.49 E-value=62 Score=24.34 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 013998 11 ESEALMARIQQLEHERDELRKDIEQL 36 (432)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqL 36 (432)
-+..|..||.+|++-++++-..||.|
T Consensus 12 ~n~~L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 12 INIQLATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 36778889999988887766666554
No 75
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=28.61 E-value=2e+02 Score=22.10 Aligned_cols=65 Identities=23% Similarity=0.339 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 013998 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (432)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEA 88 (432)
++..+|+.|+.+-|...-..+++--+- +-.-.|...+|++|..|++|+..+--+=...++.|..|
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l----------~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADK----------KAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888777776666654321 22235677888888888888866655555555555444
No 76
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=28.31 E-value=57 Score=23.07 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=16.2
Q ss_pred HHHHhHHHHHHHhhhHHHhhhHH
Q 013998 155 LEELSSENIELKKQNATLRFDLE 177 (432)
Q Consensus 155 ~~E~~s~~~~qK~~n~~Lq~dl~ 177 (432)
....+++++++|++|..|.....
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 34567788888888877766543
No 77
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=28.29 E-value=2.1e+02 Score=29.45 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=37.6
Q ss_pred HHhhhh--HHHHHhhhhhhhHHHHHhHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHhh
Q 013998 114 KFFQGC--MAAAFAERDNSVMEAEKAKEKEE----LMSQKFNEFQTRLEELSSENIELKKQ 168 (432)
Q Consensus 114 kFfQs~--VA~AFAERD~slmEaEKaKE~Ee----~m~qk~~e~e~R~~E~~s~~~~qK~~ 168 (432)
.|+++. ++.+|---|.+|.+.||+.+.|. ++-++-..++++.++++..|..|++.
T Consensus 463 ~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~ 523 (592)
T 1f5n_A 463 TYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 523 (592)
T ss_dssp HHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466654 56788888999888887765543 35566666677777777777766554
No 78
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=28.00 E-value=1.8e+02 Score=21.61 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=32.6
Q ss_pred HHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHH
Q 013998 152 QTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKF 193 (432)
Q Consensus 152 e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KF 193 (432)
+.|+.+++..+...-..|..|-.-|..-..+...+...|+++
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777888887777788888888888888877777777764
No 79
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=27.63 E-value=51 Score=24.51 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhh
Q 013998 233 YISALEDELEKTRSSVENLQSKLR 256 (432)
Q Consensus 233 yisaLEee~e~lr~si~~LQskLR 256 (432)
-+++||.|+..+..++..|.|||.
T Consensus 21 elaaleselqalekklaalksklq 44 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999885
No 80
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=27.24 E-value=2.2e+02 Score=23.13 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhH--------HHhhhHHHHHHhhHhHHHHHHHHHHHhhh
Q 013998 144 MSQKFNEFQTRLEELSSENIELKKQNA--------TLRFDLEKQEELNESFKEVINKFYEIRQQ 199 (432)
Q Consensus 144 m~qk~~e~e~R~~E~~s~~~~qK~~n~--------~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~ 199 (432)
+.+.+++|+.|+..|.+.+.+..+.=. +.|.=...+..+.++|.-+-.+...|-.+
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~ 73 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHEN 73 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889998888888877665421 22344566777888888888877776553
No 81
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.19 E-value=53 Score=24.17 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhh
Q 013998 234 ISALEDELEKTRSSVENLQSKLR 256 (432)
Q Consensus 234 isaLEee~e~lr~si~~LQskLR 256 (432)
|...-.|.++++++|..||++++
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667789999999999999886
No 82
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=27.02 E-value=1.7e+02 Score=26.92 Aligned_cols=67 Identities=15% Similarity=0.310 Sum_probs=48.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C--chHHH----------------hhHHHHHhhhhhHHHHHHHHHHH
Q 013998 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAG-P--SYLAV----------------ATRMHFQRTAGLEQEIEILKQKI 71 (432)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaG-p--gyl~v----------------ATRM~~QRtA~LEQeIE~Lkkkl 71 (432)
..+.|..++...-..-....+.|-+||.-++| | .|+.. +.++|+.....+..+|..++.+|
T Consensus 156 ~id~Lv~~lr~~~~~ir~~Er~i~~l~v~~~~mpr~~fi~~f~g~e~~~~w~~~~~~~~~~~~~~l~~~~~~i~~~q~kl 235 (339)
T 1sig_A 156 QFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKL 235 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHTTTCSSGGGTHHHHTTCSHHHHHGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcccccCcHHHHHHHhhccchHHHHHHHhHHHHHHHHHHH
Confidence 35667777777777778888999999988888 2 23332 34578888888888888888887
Q ss_pred HHhhhh
Q 013998 72 AACARE 77 (432)
Q Consensus 72 ~~c~rE 77 (432)
...-.+
T Consensus 236 ~~ie~~ 241 (339)
T 1sig_A 236 QQIEEE 241 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765443
No 83
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=26.68 E-value=57 Score=23.27 Aligned_cols=28 Identities=7% Similarity=0.126 Sum_probs=17.5
Q ss_pred hcccccchhhhhcc-cccccccccCcchhh
Q 013998 204 LETSWEDKCACLLL-DSAEMWSFNDTSTSK 232 (432)
Q Consensus 204 ~~~s~~~Kc~~Ll~-ds~~~WSfn~tStsk 232 (432)
.++..++ ..+++. -+.++|+|+|.+.+.
T Consensus 34 lg~p~~~-v~V~i~e~~~~~w~~gG~~~~e 62 (67)
T 3m21_A 34 LNKNKAS-IVVIIDEVDSNNYGLGGESVHH 62 (67)
T ss_dssp HCCCGGG-CEEEEEECCTTTEEETTEEHHH
T ss_pred HCcCccc-EEEEEEEeCHHHeEECCEEHHH
Confidence 3444433 444444 467899999987664
No 84
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=26.64 E-value=1.5e+02 Score=24.06 Aligned_cols=33 Identities=30% Similarity=0.325 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHH
Q 013998 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEK 178 (432)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~ 178 (432)
++-.+++.|+.+|++....++..-..|..++..
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666665554444444444444333
No 85
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=26.47 E-value=1.4e+02 Score=23.62 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHH
Q 013998 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 179 (432)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~ 179 (432)
++..+++.|+.+|+.....++..-..|..++..+
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777666655555555555555444
No 86
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.36 E-value=65 Score=23.79 Aligned_cols=35 Identities=26% Similarity=0.268 Sum_probs=19.8
Q ss_pred HHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHH
Q 013998 154 RLEELSSENIELKKQNATLRFDLEKQEELNESFKE 188 (432)
Q Consensus 154 R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~k 188 (432)
++.+++.....+...|..|..++..+.+++..+..
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555666666666666666654433
No 87
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=26.09 E-value=2e+02 Score=28.53 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013998 14 ALMARIQQLEHERDELRKDIEQL 36 (432)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqL 36 (432)
.+..++.+|+++|+.+.|.|-++
T Consensus 42 ~~~~~~~~l~~~~n~~sk~i~~~ 64 (455)
T 2dq0_A 42 TKLKEINRLRHERNKIAVEIGKR 64 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667778888888888888764
No 88
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=26.01 E-value=3.5e+02 Score=24.09 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013998 11 ESEALMARIQQLEHERDELRKDIEQLC 37 (432)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLC 37 (432)
.-+.+.+|...+|..-..|.||+...+
T Consensus 34 ~Fe~~e~rF~~le~~~~kL~k~~k~y~ 60 (237)
T 4avm_A 34 RFEQSASNFYQQQAEGHKLYKDLKNFL 60 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999998643
No 89
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=25.13 E-value=1.3e+02 Score=29.78 Aligned_cols=90 Identities=20% Similarity=0.199 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhh-----HHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccc
Q 013998 145 SQKFNEFQTRLEELSSENIELKKQN-----ATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDS 219 (432)
Q Consensus 145 ~qk~~e~e~R~~E~~s~~~~qK~~n-----~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds 219 (432)
..++..+..|..+++..+.+-.=.+ ..+..++.. +..+++.|-+++...-+..++ --|+.|+
T Consensus 2 ~~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~-------l~~~v~~~~~~~~~~~~~~~~------~el~~D~ 68 (354)
T 3d5a_X 2 LDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAE-------MGEVIGLIREYRKVLEDLEQA------ESLLDDP 68 (354)
T ss_dssp HHHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH------HTSTTCH
T ss_pred chHHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH------HHHhcCH
Confidence 4567777788888777664321111 123333333 346666666665533222111 0011122
Q ss_pred cccccccCcchhhhHHHHHHHHHHHHhhHHHHhhhhhhhH
Q 013998 220 AEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGL 259 (432)
Q Consensus 220 ~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~gl 259 (432)
....-.++|+..+...++.|...|+.-|
T Consensus 69 ------------e~~~~a~~e~~~l~~~~~~le~~l~~lL 96 (354)
T 3d5a_X 69 ------------ELKEMAKAEREALLARKEALEKELERHL 96 (354)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1456678899999999999888776554
No 90
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=24.99 E-value=2.7e+02 Score=22.40 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=25.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 013998 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELK 166 (432)
Q Consensus 132 mEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK 166 (432)
-|++.....|+.....++.|.-.+-+.+....-.+
T Consensus 46 ~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~ 80 (96)
T 3q8t_A 46 AEAERLDQEEAQYQREYSEFKRQQLELDDELKSVE 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666777888888889998888887765554443
No 91
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=24.11 E-value=2.7e+02 Score=22.12 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=34.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhH
Q 013998 133 EAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (432)
Q Consensus 133 EaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e 184 (432)
|++.|.++-+..-+++...+.|....+..+...++-+..|+.++....++..
T Consensus 17 e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555777777777777777777777667777777776655554
No 92
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=23.60 E-value=81 Score=25.84 Aligned_cols=32 Identities=16% Similarity=0.358 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013998 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGP 43 (432)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGp 43 (432)
.++|.++|..|+.+++.|.+.|.++=-+=+.|
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~ 34 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLKNR 34 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 47899999999999999999999986554444
No 93
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=23.58 E-value=56 Score=22.22 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=18.2
Q ss_pred hcccccchhhhhcccccccccccCcchh
Q 013998 204 LETSWEDKCACLLLDSAEMWSFNDTSTS 231 (432)
Q Consensus 204 ~~~s~~~Kc~~Ll~ds~~~WSfn~tSts 231 (432)
..+..++-.-++-+-+.++|+|+|.+.+
T Consensus 31 lg~p~~~v~v~i~e~~~~~w~~~G~~~~ 58 (62)
T 1otf_A 31 LDAPLERVRVLITEMPKNHFGIGGEPAS 58 (62)
T ss_dssp HTCCGGGCEEEEEEECGGGEEETTEETT
T ss_pred hCcCcccEEEEEEEeCHHHeEECCEEHH
Confidence 4555555444555556789999987644
No 94
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.45 E-value=5.9e+02 Score=25.80 Aligned_cols=120 Identities=8% Similarity=0.177 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHhhhhHHHHHhh
Q 013998 58 AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIK-----------NMEAEKQVKFFQGCMAAAFAE 126 (432)
Q Consensus 58 A~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~K-----------N~e~EkqVkFfQs~VA~AFAE 126 (432)
..+...|+.|+..|....+-+ .+.|..=..+-++++.-+.. +.+||++..+.|-.|-.-|.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~-------~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~- 134 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNS-------KDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ- 134 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 455556666666655443333 23344444444444422222 34777888887777777666
Q ss_pred hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHH
Q 013998 127 RDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191 (432)
Q Consensus 127 RD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~ 191 (432)
+-.+++. .=+...-+++.+|.-++--..-|..-=....+++.|+..++.|..-+..||.
T Consensus 135 -~ir~Lq~-----~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~qv~a 193 (390)
T 1deq_A 135 -RINLLQK-----NVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQVIA 193 (390)
T ss_pred -HHHHHHH-----HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHHhhhh
Confidence 3333321 1111222233333333211111211113455667777777777665556554
No 95
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}
Probab=22.90 E-value=78 Score=30.09 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhhhccchhhhhHHHHHhhh
Q 013998 289 ELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKT 323 (432)
Q Consensus 289 ~L~~~h~~~R~~Im~lL~e~~s~iks~~~~i~ek~ 323 (432)
-+-.++.-|.+.||.+++.+...+++|+..|+.+-
T Consensus 274 ~~sg~~g~H~~~i~~~~~~~~~s~~~i~~~~~~~~ 308 (320)
T 3dxi_A 274 MLSGANNIPQKEVMDWVTNRVYSFNSIIRALDNRK 308 (320)
T ss_dssp HHHHHTTCCHHHHHHHHC---CCHHHHHHTC----
T ss_pred HHHhccCCCHHHHHHHHhcCCCCHHHHHHHHHhhh
Confidence 35566777889999999999999999999998765
No 96
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.74 E-value=3.8e+02 Score=23.48 Aligned_cols=33 Identities=15% Similarity=0.066 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHH
Q 013998 148 FNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180 (432)
Q Consensus 148 ~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~ 180 (432)
-+.++.|.+.++..+.+-..+-+.+|..|..++
T Consensus 98 ~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 98 KYAIEILNKRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp HHHHHHHHHHHHHTTTHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777666666666666666653
No 97
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=22.52 E-value=81 Score=21.43 Aligned_cols=28 Identities=11% Similarity=-0.014 Sum_probs=16.7
Q ss_pred hcccccchhhhhcccccccccccCcchh
Q 013998 204 LETSWEDKCACLLLDSAEMWSFNDTSTS 231 (432)
Q Consensus 204 ~~~s~~~Kc~~Ll~ds~~~WSfn~tSts 231 (432)
..+..++=.-.+-+-+.++|+|+|.+.+
T Consensus 31 lg~~~~~v~V~i~e~~~~~w~~gG~~~~ 58 (61)
T 2opa_A 31 TGASEEKIVVFIEEMRKDHYAVAGKRLS 58 (61)
T ss_dssp HCCCGGGCEEEEEEECGGGCEETTEEGG
T ss_pred hCcCcCeEEEEEEEcCHHHeeECCEEhh
Confidence 3444444333444456689999997544
No 98
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=22.24 E-value=2.8e+02 Score=21.53 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHh
Q 013998 16 MARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAAC 74 (432)
Q Consensus 16 ~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c 74 (432)
.+.+.+|+..-..|...|..|=-+=|-|+|.+- -+.+++.|-.+++.++..|..+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~----d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQ----PHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGS----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccC----CHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555566666566678886321 1234444545455555544433
No 99
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=21.86 E-value=75 Score=22.14 Aligned_cols=20 Identities=50% Similarity=0.511 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHHHHHhhh
Q 013998 57 TAGLEQEIEILKQKIAACAR 76 (432)
Q Consensus 57 tA~LEQeIE~Lkkkl~~c~r 76 (432)
+|+|.|||-.|||.+++.--
T Consensus 4 iaalkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57788888888887766543
No 100
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=21.60 E-value=87 Score=22.10 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=18.3
Q ss_pred hcccccchhhhhcccccccccccCcchhhh
Q 013998 204 LETSWEDKCACLLLDSAEMWSFNDTSTSKY 233 (432)
Q Consensus 204 ~~~s~~~Kc~~Ll~ds~~~WSfn~tStsky 233 (432)
.++..++---++-.-+.++|.|+|.+.+..
T Consensus 31 lg~p~~~v~V~i~e~~~~~w~~gG~~~~e~ 60 (65)
T 3ry0_A 31 LGTPVEAVRVIVEETPPERWFVGGRSVAER 60 (65)
T ss_dssp HCCCGGGCEEEEEEECGGGCEETTEEHHHH
T ss_pred hCcCcccEEEEEEEcCHHHeeECCEEHHHh
Confidence 344444333344445678999999877654
No 101
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=21.24 E-value=65 Score=22.38 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=22.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 013998 10 NESEALMARIQQLEHERDELRKDIEQL 36 (432)
Q Consensus 10 ~~~esl~aRI~qLEhERDELrKDIEqL 36 (432)
+..+++..+|++|+.+-|.+.-.++++
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~ 30 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARL 30 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999998888765
No 102
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=21.03 E-value=3.2e+02 Score=27.79 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013998 14 ALMARIQQLEHERDELRKDIEQL 36 (432)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqL 36 (432)
.+..++++|+.+|+.+.|.|-++
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i~~~ 66 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEIGKR 66 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777777777665
No 103
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.70 E-value=3.8e+02 Score=25.19 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhh-hcccc
Q 013998 144 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEV-LETSW 208 (432)
Q Consensus 144 m~qk~~e~e~R~~E~~s~~~~qK~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~-~~~s~ 208 (432)
.+.+-..+..+++.++..+...|+-|. +|..+-++.+-+..||..+-.=...+++- .++.|
T Consensus 113 aLeEN~~Lh~~ie~l~eEi~~LkeEn~----eLkeLae~~q~la~vi~~l~~~~~~~~e~~~~~~~ 174 (209)
T 2wvr_A 113 ALKENEKLHKEIEQKDNEIARLKKENK----ELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEF 174 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCcccccCchhhhc
Confidence 345556677888888888888887775 45677788888889999887766666555 34444
No 104
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=20.55 E-value=2.9e+02 Score=29.53 Aligned_cols=80 Identities=21% Similarity=0.251 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch----HHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHH
Q 013998 9 ENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSY----LAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEE 84 (432)
Q Consensus 9 ~~~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgy----l~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEE 84 (432)
-+|...+..+|.+++.|||+|.+-|...=-=+++-|- ..+++-=....+.+|+- ++.|+.|-|. +-.=.+
T Consensus 9 i~dl~~i~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~~l~~~yg~-----l~il~~ 82 (706)
T 3fhn_A 9 IDDLLNINDRIKQVQNERNELASKLQNLKQSLASNDTEVALSEVIAQDIIEVGASVEG-LEQLRAKYGD-----LQILNK 82 (706)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHSCSSHHH-HHHHHHTTCC-----CHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccccHHH-HHHHHHHcCC-----cHHHHH
Confidence 4677888999999999999999999765431222221 22233333334455655 6778776552 222344
Q ss_pred HHHHHHHHHH
Q 013998 85 LSEAYRIKGQ 94 (432)
Q Consensus 85 LsEAYRiK~q 94 (432)
|-..|+-|..
T Consensus 83 l~~~~~~~~~ 92 (706)
T 3fhn_A 83 LEKVAVQQTQ 92 (706)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 105
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=20.51 E-value=57 Score=22.08 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhHHHHhhhh
Q 013998 234 ISALEDELEKTRSSVENLQSKL 255 (432)
Q Consensus 234 isaLEee~e~lr~si~~LQskL 255 (432)
|.+||=|++.|..+|..|..|+
T Consensus 2 idalefendaleqkiaalkqki 23 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHH
Confidence 5677777777777777666554
No 106
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=20.24 E-value=84 Score=24.67 Aligned_cols=27 Identities=15% Similarity=0.041 Sum_probs=17.0
Q ss_pred hcccccchhhhhcccccccccccCcch
Q 013998 204 LETSWEDKCACLLLDSAEMWSFNDTST 230 (432)
Q Consensus 204 ~~~s~~~Kc~~Ll~ds~~~WSfn~tSt 230 (432)
..+..++=--.+-+-+.++|+|||...
T Consensus 88 lgi~~~~v~I~~~e~~~~~wg~~G~~~ 114 (119)
T 2os5_A 88 LKLPKDKVIITYFDLQPIHVGFNGTTV 114 (119)
T ss_dssp HCCCGGGEEEEEEECCGGGCEETTEEH
T ss_pred hCcCcccEEEEEEECCHHHeeECCEEh
Confidence 455555433344455778999998753
No 107
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=20.21 E-value=74 Score=24.54 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=16.6
Q ss_pred hcccccchhhhhcccccccccccCcc
Q 013998 204 LETSWEDKCACLLLDSAEMWSFNDTS 229 (432)
Q Consensus 204 ~~~s~~~Kc~~Ll~ds~~~WSfn~tS 229 (432)
..+..++=--.+-+-+.++|+|||+.
T Consensus 87 lgi~~~~v~I~~~e~~~~~wg~~G~t 112 (113)
T 1hfo_A 87 LGIPKNRMYIHFVNLNGDDVGWNGTT 112 (113)
T ss_dssp HCCCGGGEEEEEEECCGGGEEETTEE
T ss_pred hCcCcCeEEEEEEECCHHHeeeCCEe
Confidence 45555543334455677899999863
Done!