BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013999
(432 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5FW14|CHMP7_XENTR Charged multivesicular body protein 7 OS=Xenopus tropicalis
GN=chmp7 PE=2 SV=1
Length = 468
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 107/384 (27%), Positives = 172/384 (44%), Gaps = 47/384 (12%)
Query: 15 PDWNDEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEWF 70
P+W+D+ + F AF R SDW+ K +FW LILK AR L I SQ++ + F
Sbjct: 9 PEWDDDERMSFLFSAFKQTRDVNTSDWDGKMKFWIPLILKHARAQGLLSISLSQLERD-F 67
Query: 71 NRGGLTPLCFDDVLFVMYNEGDVVRSVDLV-DAASGRLTQLFRK--VRSLM--------- 118
R G PL V+ M +G + + D V + +SG L+ R+ +R L
Sbjct: 68 RRKGFAPLGLRIVIQEMMRQGTLRKESDYVSNVSSGWLSWGMRQLVIRPLRWTIGTVLGS 127
Query: 119 ----ARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQD 174
PEI+ + ++++ + + LLSE + C + C
Sbjct: 128 QMGPDEPLVIPEIIKERAALVLQRYQSSPLRALPLLSEEEVRTLCA-------EICPNPS 180
Query: 175 EASAVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWT----VE 230
+ VL L G K L + + + V+VS+ V IS D + L + E
Sbjct: 181 ALNLVLLQLQGDKKICVLERAGKKLVKFVRVSV--GQVDPISESDLGIYELQQSEKLLSE 238
Query: 231 KLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNR---VE 287
+LQ + DR E +R A GNK ALR ++ KL + + T L N+ V+
Sbjct: 239 RLQSAGEESDRLTEEARTYNRA----GNKHQALRCLRKRKLLER---RITELQNKQDTVQ 291
Query: 288 EVLSLIENAESTKKVSEAIQIGAQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIV 345
+L I AE+ +KV A Q+G A+K +++E+ + +++++E DLQ + +
Sbjct: 292 GILERIAAAETDRKVVSAYQMGVSALKLALKDVTMEKAESIVDQIQEYCDLQDDLSQTLA 351
Query: 346 P-SYTGIDDEDIEEEFKKLEQEVE 368
S ID ED+E+E + Q E
Sbjct: 352 SVSDADIDSEDLEKELNDILQNKE 375
>sp|Q7T0X5|CHMP7_XENLA Charged multivesicular body protein 7 OS=Xenopus laevis GN=chmp7
PE=2 SV=1
Length = 422
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 171/374 (45%), Gaps = 27/374 (7%)
Query: 15 PDWNDEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEWF 70
P+W D+ + F AF R DW+ K +FW LIL AR L I SQ++N+ F
Sbjct: 9 PEWEDDERMSFLFSAFKRTRDVNTCDWDGKMKFWIPLILTHARAQGLLSITLSQLEND-F 67
Query: 71 NRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDA-ASGRLTQLFRK--VRSL------MARS 121
R G P+ V+ M +G + + D V +SG L+ R+ +R L M S
Sbjct: 68 RRKGCAPMGLRTVIQEMIRQGTLRKETDFVSGVSSGWLSWGMRQLVIRPLRWTIGTMLGS 127
Query: 122 AATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQ----DKCGGQDEAS 177
P+ + +++ EV+K++A V++ S + S ++ ++ + C +
Sbjct: 128 QVGPD----EPLVIPEVIKERAALVLQRYQSSTFRSFPLLCEEEVHTLCAEICPNPSALN 183
Query: 178 AVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLD 237
VL L G K L + + + V+VS+ V IS D + L + L +L
Sbjct: 184 LVLLQLQGDKKICVLERAGQKLVKFVRVSV--GQVEPISESDLGIYQLQQGEKLLSERLQ 241
Query: 238 IIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAE 297
+ A +GNK ALR ++ KL + + + + ++ +L I AE
Sbjct: 242 SAGEESNRLTEEARTYNRAGNKNQALRCLRKRKLVERRITELQNKQDNIQGILERISAAE 301
Query: 298 STKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIVP-SYTGIDDE 354
+ +KV A Q+G A+K+ +++E+ + +++++E DLQ + + + +D +
Sbjct: 302 TDRKVVSAYQMGVSALKQALKDVTLEKAESIVDQIQEYCDLQDDLSQTLSSVTDADVDSD 361
Query: 355 DIEEEFKKLEQEVE 368
D+E E ++ Q E
Sbjct: 362 DLERELNEILQNEE 375
>sp|Q8R1T1|CHMP7_MOUSE Charged multivesicular body protein 7 OS=Mus musculus GN=Chmp7 PE=1
SV=1
Length = 451
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 88/375 (23%), Positives = 176/375 (46%), Gaps = 21/375 (5%)
Query: 15 PDWN-DEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEW 69
P+W DE + F AF R +DW+ K FW L+L +R + + ++ E
Sbjct: 22 PEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLVLSHSRRQGVVRLRLRDLQ-EA 80
Query: 70 FNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAAS------GRLTQLFRKVRSLMARSAA 123
F R G PL VL + G++ R D + + G L + ++ ++
Sbjct: 81 FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG 140
Query: 124 TPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASAVLS 181
++ ++ ++ +E+LK+KA+EV +L S +S ++ + + C DE + L
Sbjct: 141 DHKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSALCANSCPDERTFYLV 200
Query: 182 FLTGRGKALYLSISKNEFTEGVKVSLSP-AAVSSISSLDYDVLHLIWTVEKLQLQLDIID 240
L + K +++ + + VK + P A VS ++ +D V L+ + + L +++ +
Sbjct: 201 LLQLQ-KEKRVTVLEQNGEKIVKFARGPHAKVSPVNDVDVGVYQLMQSEQLLSRKVESLS 259
Query: 241 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 300
+ E ++ A + +G K +ALR K + T++ E + L+ V+ +L I +++ +
Sbjct: 260 QESERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQ 319
Query: 301 KVSEAIQIGAQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTG---IDDED 355
V A Q G A+K ++VE+ + +++++E D Q + + + T D E+
Sbjct: 320 MVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEE 379
Query: 356 IEEEFKKLEQEVECE 370
+E+E L Q+ E
Sbjct: 380 LEKELDILLQDTTTE 394
>sp|Q8WUX9|CHMP7_HUMAN Charged multivesicular body protein 7 OS=Homo sapiens GN=CHMP7 PE=1
SV=1
Length = 453
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 87/372 (23%), Positives = 175/372 (47%), Gaps = 21/372 (5%)
Query: 15 PDWN-DEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEW 69
P+W DE + F AF R +DW+ K FW L+L +R + + ++ E
Sbjct: 22 PEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLVLSHSRRQGVVRLRLRDLQ-EA 80
Query: 70 FNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAAS------GRLTQLFRKVRSLMARSAA 123
F R G PL VL + G++ R D + + G L + ++ ++
Sbjct: 81 FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG 140
Query: 124 TPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASAVLS 181
++ ++ ++ +E+LK+KA+EV +L S +S ++ + + C DE + L
Sbjct: 141 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV 200
Query: 182 FLTGRGKALYLSISKNEFTEGVKVSLSP-AAVSSISSLDYDVLHLIWTVEKLQLQLDIID 240
L + K +++ + + VK + P A VS ++ +D V L+ + + L +++ +
Sbjct: 201 LLQLQ-KEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLS 259
Query: 241 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 300
+ E ++ A + +G K +ALR K + T++ E + L+ V+ +L I +++ +
Sbjct: 260 QEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQ 319
Query: 301 KVSEAIQIGAQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTG---IDDED 355
V A Q G A+K ++VE+ + +++++E D Q + + + T D E+
Sbjct: 320 MVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEE 379
Query: 356 IEEEFKKLEQEV 367
+E+E L Q+
Sbjct: 380 LEKELDILLQDT 391
>sp|Q5R812|CHMP7_PONAB Charged multivesicular body protein 7 OS=Pongo abelii GN=CHMP7 PE=2
SV=1
Length = 453
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 87/372 (23%), Positives = 175/372 (47%), Gaps = 21/372 (5%)
Query: 15 PDWN-DEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEW 69
P+W DE + F AF R +DW+ K FW L+L +R + + ++ E
Sbjct: 22 PEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLVLSHSRRQGVVRLRLRDLQ-EA 80
Query: 70 FNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAAS------GRLTQLFRKVRSLMARSAA 123
F R G PL VL + G++ R D + + G L + ++ ++
Sbjct: 81 FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG 140
Query: 124 TPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASAVLS 181
++ ++ ++ +E+LK+KA+EV +L S +S ++ + + C DE + L
Sbjct: 141 DNKVPAEEVLVAVELLKEKAEEVYRLYQSSPLSSHPVVALSELSTLCANSCPDERTFYLV 200
Query: 182 FLTGRGKALYLSISKNEFTEGVKVSLSP-AAVSSISSLDYDVLHLIWTVEKLQLQLDIID 240
L + K +++ + + VK + P A VS ++ +D V L+ + + L +++ +
Sbjct: 201 LLQLQ-KEKRVTVLEQNGEKIVKFARGPHAKVSPVNDVDVGVYQLMQSEQLLSRKVESLS 259
Query: 241 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 300
+ E ++ A + +G K +ALR K + T++ E + L+ V+ +L I +++ +
Sbjct: 260 QEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQ 319
Query: 301 KVSEAIQIGAQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTG---IDDED 355
V A Q G A+K ++VE+ + +++++E D Q + + + T D E+
Sbjct: 320 MVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEE 379
Query: 356 IEEEFKKLEQEV 367
+E+E L Q+
Sbjct: 380 LEKELDILLQDT 391
>sp|Q6PBQ2|CHMP7_DANRE Charged multivesicular body protein 7 OS=Danio rerio GN=chmp7 PE=2
SV=1
Length = 457
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 170/345 (49%), Gaps = 17/345 (4%)
Query: 15 PDWNDEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEWF 70
PDW+D+ + F AF R +DW+ K FW LI++ R ++ Q NE F
Sbjct: 14 PDWDDDERMSFLFSAFKENRDVDCTDWDGKIDFWSPLIIEHCRRCGSVCVN-LQDLNENF 72
Query: 71 NRGGLTPLCFDDVLFVMYNEGDVVRSVDLV-DAASGRLTQ-----LFRKVRSLMARSAAT 124
R G PL V+ M G V + D + SG L+ L R ++ ++ +
Sbjct: 73 RRKGSVPLGLSTVIQSMIRSGKVQKESDFAANVDSGWLSWGVGLLLVRPLKWTLSALLGS 132
Query: 125 PEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCG--GQDEASAVLSF 182
+ L++ +++E++K+KA E++ S ++ +++ ++ + DE++ ++
Sbjct: 133 GRVPLEESFVVIELVKEKAAELLAAYRGSALSARSLLSFQELRSLSSHICPDESTLCMAL 192
Query: 183 LTGRGKALYLSISKNEFTEGVKVSLSPAA-VSSISSLDYDVLHLIWTVEKLQLQLDIIDR 241
L + + ++++S +E + VK S + VS +S +D + L + + L+ +++ +
Sbjct: 193 LQLQ-REKHVTVSLHEGEKLVKFSQAGQGRVSPVSEVDLGIYQLQCSEKLLEERVEALGH 251
Query: 242 HYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKK 301
E ++ A + L G K+ ALR + K ++ ++ + L V+ +L I N+++ +
Sbjct: 252 EAEKCKQQAKSLLKEGKKSQALRCLRGSKRVEKKADRLFAQLETVKGILDRIANSQTDRL 311
Query: 302 VSEAIQIGAQAIKKN--KISVEELQLCLEELEESIDLQKQAEKVI 344
V +A Q G A++ + ++VE + +++++E D Q + + +
Sbjct: 312 VMQAYQAGVAALRISLKGVTVERAENLVDQIQELCDTQDEVNQTL 356
>sp|Q5ZJB7|CHMP7_CHICK Charged multivesicular body protein 7 OS=Gallus gallus GN=CHMP7
PE=2 SV=1
Length = 448
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/380 (23%), Positives = 175/380 (46%), Gaps = 38/380 (10%)
Query: 15 PDW--NDEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNE 68
P+W +DE +A F AF R ++W+ K FW L+L R + +++N
Sbjct: 19 PEWETDDERMAFL-FSAFKQSREVNSTEWDSKMAFWVGLVLARGRRRGVVRTCLRELQN- 76
Query: 69 WFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGR----------LTQLFRKVRSLM 118
F R G PL VL + G + R D + + L L + S++
Sbjct: 77 GFERRGSVPLGLGTVLRELLRRGKMQRESDFMASVDSSWISWGVGVFILKPLKWTLSSVL 136
Query: 119 ARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGG--QDEA 176
S E ++ +I +E+L++KA+EV +L S +S ++ + + + C G DE
Sbjct: 137 GDSKVPEE---EEVLIYVELLQEKAEEVYRLYQNSVLSSHPVVALSELRSLCAGVCPDER 193
Query: 177 SAVLSFLTGRGKALYLSISKN-----EFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEK 231
+ L L + + + +N +F G+ +SP ++ +D V L+ + +
Sbjct: 194 TFYLLLLQLQKEKKVTILEQNGEKIVKFARGLHAKVSP-----MNDVDIGVYQLMQSEQL 248
Query: 232 LQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLS 291
L +++ + + E + A ++ +G K +ALR K + T+ E+ S L+ V+ +L
Sbjct: 249 LSQKVESLSQEAEKCKDDARSACRAGKKQLALRCLKSKRRTERRIEELHSKLDAVQGILD 308
Query: 292 LIENAESTKKVSEAIQIGAQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIVPSYT 349
I +++ + V A Q G A+K ++VE+ + +++++E D Q + + + +
Sbjct: 309 RIYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAENLVDQIQELCDTQDEVAQTLAGAGV 368
Query: 350 G---IDDEDIEEEFKKLEQE 366
+D E++E+E L Q+
Sbjct: 369 NGLEMDSEELEKELDSLLQD 388
>sp|P0C0A3|CHMP6_MOUSE Charged multivesicular body protein 6 OS=Mus musculus GN=Chmp6 PE=2
SV=2
Length = 200
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 18/197 (9%)
Query: 213 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLT 272
S ++ D +L L +KL+ + + E R A L G K AK L
Sbjct: 11 SRVTEQDRAILQLKQQRDKLRQYQKRVTQQLERERALARQLLRDGRKE----RAKLLLKK 66
Query: 273 KESREKCTSLLNRVEEVLS----LIENAESTK---KVSEAIQIGAQAIKK--NKISVEEL 323
K RE+ LL+R E +S ++++ E T+ KV E +Q+G + + K +S+EE+
Sbjct: 67 KRYREQ---LLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQVGNECLNKMHQVMSIEEV 123
Query: 324 QLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQE-VEC-ERPKPTVSKTGV 381
+ L+E +E+++ Q+Q ++++ ++T D++ I EE + QE +E E P +
Sbjct: 124 ERILDETQEAVEYQRQIDELLAGNFTQEDEDAILEELNAITQEQMELPEVPSEPLPDRNP 183
Query: 382 NEPAASESAESLRVAFS 398
PA + S ++ VA S
Sbjct: 184 EAPAKARSRQAELVAAS 200
>sp|Q96FZ7|CHMP6_HUMAN Charged multivesicular body protein 6 OS=Homo sapiens GN=CHMP6 PE=1
SV=3
Length = 201
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 94/192 (48%), Gaps = 7/192 (3%)
Query: 213 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLT 272
S ++ D +L L +KL+ I + E R A L G K A K+ +
Sbjct: 11 SRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERAKLLLKKKRYQ 70
Query: 273 KESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEEL 330
++ ++ + ++ +E ++ IE + KV E +Q G + + K +S+EE++ L+E
Sbjct: 71 EQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSIEEVERILDET 130
Query: 331 EESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQEVECERP----KPTVSKTGVNEPAA 386
+E+++ Q+Q ++++ S+T D++ I EE + QE + E P +P K N P
Sbjct: 131 QEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQE-QIELPEVPSEPLPEKIPENVPVK 189
Query: 387 SESAESLRVAFS 398
+ ++ VA S
Sbjct: 190 ARPRQAELVAAS 201
>sp|Q5R861|CHMP6_PONAB Charged multivesicular body protein 6 OS=Pongo abelii GN=CHMP6 PE=2
SV=3
Length = 201
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 213 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLT 272
S ++ D +L L +KL+ I + E R A L G K A K+ +
Sbjct: 11 SRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERAKLLLKKKRYQ 70
Query: 273 KESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEEL 330
++ ++ + ++ +E ++ IE + KV E +Q G + + K +S+EE++ L+E
Sbjct: 71 EQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSIEEVERILDET 130
Query: 331 EESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQE 366
+E+++ Q+Q ++++ S+T D++ I EE + QE
Sbjct: 131 QEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQE 166
>sp|Q86K93|CHMP7_DICDI Charged multivesicular body protein 7 OS=Dictyostelium discoideum
GN=chmp7 PE=3 SV=1
Length = 477
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/357 (22%), Positives = 161/357 (45%), Gaps = 39/357 (10%)
Query: 43 FWKNLILKIARHFSLAIIHPSQVKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDA 102
FW N ++ I++ ++ I P ++ + +F ++P+ +L M +V+ + +
Sbjct: 54 FWNNSLIDISKSCNILIFTP-KLLSTYFTVENVSPIYLPLILNEMIKTKFIVKYEEYIKD 112
Query: 103 A-------SGRLTQLFRKVRSLMARSAATPEILLKDHV--ILMEVLKDKADEVIK-LLSE 152
+ + Q F+ L +TP + +V IL E++KDKA+++ + L
Sbjct: 113 YGWSKWVWTKMVVQPFQYYTGL-----STPNTETEKNVKFILPEMIKDKAEQLYQHQLKN 167
Query: 153 SHWTSSCIITM----KKFQDKCGGQDEASAVLSFLTGRGKALYLSISK---------NEF 199
+ T+ II+ K +D ++E +L L K L L+ +K E
Sbjct: 168 MNSTTDNIISYINLEKSIKDWYITREELDLLLLVLFRDSKVLILTNNKIKNINNNNNGED 227
Query: 200 TEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNK 259
G+K + V I D+ +L L T E L+ Q + E + S+ K
Sbjct: 228 RIGIKFAFDGEKVQPIQETDFGILKLQTTYETLKQQESKLLTDIEEISNTIKESIRIKQK 287
Query: 260 TVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK--NK 317
AL K+ KL + EK + + E+L IE+A+S +++ E++ G +KK +
Sbjct: 288 NHALLQLKKKKLLESILEKRATASTNIHEILFSIESAKSNQQIIESLCTGVSTLKKVNQE 347
Query: 318 ISVEELQLCLEELEESIDLQKQAEKVIVPSYTG--------IDDEDIEEEFKKLEQE 366
ISV+++ L++ +++I Q++ + + + ID++ +E+E ++ Q+
Sbjct: 348 ISVDQVDSILDDYQDAITNQREIDDAMKSGFNSVESLSSADIDEDQLEKELDQMLQD 404
>sp|Q5ZL55|CHMP6_CHICK Charged multivesicular body protein 6 OS=Gallus gallus GN=CHMP6
PE=2 SV=3
Length = 200
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 213 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLT 272
S ++ D VL L +KL+ I E R+ A L G K A+ K+ +
Sbjct: 11 SRVTEQDKAVLQLKQQRDKLRQYQKRISLGLERERELARQLLKEGKKEKAMLLLKKKRYQ 70
Query: 273 KESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEEL 330
++ +K + ++ +E ++ IE + KV E ++IG + + K +S+EE++ + E
Sbjct: 71 EQLLDKTDNQISNLERMVQDIEFTQIEMKVIEGLKIGNECLNKMHQVMSIEEVERIIGET 130
Query: 331 EESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQE 366
+++++ Q+Q ++++ S T D++ I EE + QE
Sbjct: 131 QDAVEYQRQIDEILAGSLTEEDEDAILEELNAITQE 166
>sp|Q6NU11|CHM6B_XENLA Charged multivesicular body protein 6-B OS=Xenopus laevis
GN=chmp6-b PE=2 SV=3
Length = 200
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
Query: 213 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLT 272
S ++ D VL L +KL+ I + R+ A LH G K A K+ +
Sbjct: 11 SRVTEQDKAVLQLKQQRDKLKQYQKKITLQLQRERELAKQLLHDGKKEKAKLLLKKKRYQ 70
Query: 273 KESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNK--ISVEELQLCLEEL 330
++ EK + ++ +E+++ IE A+ KV E +++G + +KK +S+EE++ +EE
Sbjct: 71 EQLLEKTDNQISNLEKMVDDIEFAQIEMKVIEGLKVGNEWLKKMHEVMSIEEVEKIMEET 130
Query: 331 EESIDLQKQAEKVIVPSYT 349
+E I+ Q+Q ++++ S T
Sbjct: 131 QEGIEYQRQIDEMLSGSLT 149
>sp|Q6GMA4|CHM6A_XENLA Charged multivesicular body protein 6-A OS=Xenopus laevis
GN=chmp6-a PE=2 SV=3
Length = 200
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
Query: 213 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLT 272
S ++ D VL L +KL+ I + R+ A LH G K A K+ +
Sbjct: 11 SRVTEQDKAVLQLKQQRDKLKQYQKKITLQLQRERELAKQLLHDGKKEKAKLLLKKKRYQ 70
Query: 273 KESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNK--ISVEELQLCLEEL 330
++ EK + ++ +E+++ IE A+ KV E +++G + +KK +S+EE++ ++E
Sbjct: 71 EQLLEKTDNQISNLEKMVEDIEFAQIEMKVIEGLKVGNECLKKMHEVMSIEEVERIMDET 130
Query: 331 EESIDLQKQAEKVIVPSYT 349
+E I+ Q+Q ++++ S T
Sbjct: 131 QEGIEYQRQIDEMLSGSLT 149
>sp|Q7T339|CHMP5_DANRE Charged multivesicular body protein 5 OS=Danio rerio GN=chmp5 PE=2
SV=1
Length = 220
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 199 FTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGN 258
F G P IS +D + + +L +L M K + + G
Sbjct: 5 FGRGKPKGPPPNLTDCISGVDSRAESVDKKIARLDAEL--------MKYKDQMKKMRDGP 56
Query: 259 -----KTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAI 313
K A+R KQ ++ + R++ +E+ I+ + TK EA++IGA+ +
Sbjct: 57 SKNMVKQKAMRVLKQKRMYEGQRDQLMQQSFNMEQANYTIQTLKDTKTTVEAMKIGAKEM 116
Query: 314 KK--NKISVEELQLCLEELEESIDLQKQAEKVIVPSYTG--IDDEDIEEE 359
KK + +++++ ++LE+ ++ + ++ + SY ID++D+E E
Sbjct: 117 KKAYKNVKIDQIEDLQDQLEDMMEDANEVQEALSRSYGTPEIDEDDLEAE 166
>sp|O94730|YG0I_SCHPO Uncharacterized protein C1604.18c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC1604.18c PE=3 SV=1
Length = 449
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 105/230 (45%), Gaps = 20/230 (8%)
Query: 157 SSCIITMKKFQDKCG---------GQDEASAVLSFLTGRGKALYLSISKNEFTEGVKVSL 207
+S I T FQD G +DE +L+++ + L +F ++
Sbjct: 180 TSAIYTWDFFQDTFGSLYWEEGKLNKDEMECLLNWMCYQKHVLIFDSKIIKFLPNSQIDA 239
Query: 208 SPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAK 267
A++ S+D V LI + + + ++ E + ++ G KT+A+ + +
Sbjct: 240 QLASIDK--SIDGSVADLIQARASIAQRSEFLNEELEQLSQVLNQAVKKGEKTIAITYLR 297
Query: 268 QLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQ---AIKKNKISVEELQ 324
+ K+ + E+ S +++ ++S I+NA K + A+ G++ AI E+++
Sbjct: 298 RKKILSKDLERKVSSRLQLDTIISNIDNAVDNKILLIAMSSGSEALDAILAQMGGTEKVE 357
Query: 325 LCLEELEESIDLQKQAEKVIV---PSYTGIDDEDIEEEFKKL---EQEVE 368
LE + +++ ++ + I P ++DE +E+E++ L EQ+VE
Sbjct: 358 DVLENVNDTLARSEEIDATIQTYNPQNIDLEDEAVEKEWQDLVAEEQKVE 407
>sp|Q503V0|CHMP6_DANRE Charged multivesicular body protein 6 OS=Danio rerio GN=chmp6 PE=2
SV=3
Length = 206
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 2/144 (1%)
Query: 213 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLT 272
+ ++ D VL L +KL+ I + R+ A L G K AL K+ +
Sbjct: 11 TRVTEQDRAVLQLKQQRDKLKQYQKRITLQMDKERQLAKQLLKDGKKDKALLLLKKKRYQ 70
Query: 273 KESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNK--ISVEELQLCLEEL 330
+ EK + ++ +E ++ IE A+ KV E +++G +KK +S+EE++ ++E
Sbjct: 71 DQLLEKTENQISNLERMVQDIEFAQIEMKVIEGLKVGNDCLKKMHEVLSIEEVEKIMDET 130
Query: 331 EESIDLQKQAEKVIVPSYTGIDDE 354
++I+ QKQ ++++ S T D+E
Sbjct: 131 HDAIEYQKQIDEMLAGSLTQEDEE 154
>sp|Q54KZ4|CHMP6_DICDI Charged multivesicular body protein 6 OS=Dictyostelium discoideum
GN=chmp6 PE=3 SV=2
Length = 218
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Query: 256 SGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIK- 314
+G K AL K+ K ++ ++ + L +EE+++ +E AE ++ E+++ G +++K
Sbjct: 54 AGKKNQALLALKKKKYQEKMLDESFANLQNIEELIANVEQAEIQVRIFESLKQGNESLKE 113
Query: 315 -KNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQEVECER-P 372
+ ++S+E+++ +EE E+I Q + + ++ +++D+ E ++E+++ ++ P
Sbjct: 114 IQKEMSLEDVENLMEETAEAIQYQNDISEALSGKFSKEEEDDLLNELDEMEKQLNAQQYP 173
Query: 373 K-PTVSKTGVNEPAASESAESLRVAFSTIGLN 403
K P + P E + +T GLN
Sbjct: 174 KVPETQLPKIELPIEDAIEEGKQRKSTTNGLN 205
>sp|Q753W3|SNF7_ASHGO Vacuolar-sorting protein SNF7 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SNF7 PE=3
SV=1
Length = 237
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 249 SALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQI 308
SA L GNK +A K+ K+ + K ++ +E+ L IENA + +A++
Sbjct: 49 SARHFLSKGNKNMAKAALKRKKVFESQLLKIDKQVDSLEQQLYSIENANLNLETMKAMKQ 108
Query: 309 GAQAIK--KNKISVEELQLCLEELEESIDLQKQ-AEKVIVPSYTGIDD 353
GA A+K + VE + ++E+ E ++L ++ +E + P YTG+++
Sbjct: 109 GASAMKHIHEGLDVERVDETMDEIREQVELGEEISEAISRPLYTGVNE 156
>sp|Q5FW29|CHMP5_XENTR Charged multivesicular body protein 5 OS=Xenopus tropicalis
GN=chmp5 PE=2 SV=1
Length = 219
Score = 35.4 bits (80), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 259 KTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK--N 316
K ALR KQ ++ ++ R+ +E+ I++ + TK +A+++GA+ +KK
Sbjct: 62 KQKALRVLKQKRMYEQQRDNLNQQSFNMEQTNYAIQSLKDTKTTVDAMKVGAKEMKKAYK 121
Query: 317 KISVEELQLCLEELEESIDLQKQAEKVIVPSYTG--IDDEDIEEE 359
++ +++++ ++LE+ ++ + ++ + SY ID++D+E E
Sbjct: 122 QVKIDQIEDLQDQLEDMMENANEIQEALSRSYGTPEIDEDDLEAE 166
>sp|Q6DD52|CHMP5_XENLA Charged multivesicular body protein 5 OS=Xenopus laevis GN=chmp5
PE=2 SV=1
Length = 219
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 59/105 (56%), Gaps = 4/105 (3%)
Query: 259 KTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK--N 316
K ALR KQ ++ ++ R+ +E+ I+ + TK +A+++GA+ +KK
Sbjct: 62 KQKALRVLKQKRMYEQQRDNLNQQSFNMEQANYTIQTLKDTKTTVDAMKVGAKEMKKAYK 121
Query: 317 KISVEELQLCLEELEESIDLQKQAEKVIVPSYTG--IDDEDIEEE 359
++ +++++ ++LE+ ++ + ++ + SY ID++D+E E
Sbjct: 122 QVKIDQIEDLQDQLEDMMENANEIQEALSRSYGTPEIDEDDLEAE 166
>sp|Q6BSH2|SNF7_DEBHA Vacuolar-sorting protein SNF7 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=SNF7 PE=3 SV=2
Length = 226
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 95/189 (50%), Gaps = 33/189 (17%)
Query: 244 EMSRKSALASLH-SGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKV 302
+++ + ALA + + NK +A K+ K + + K + ++ +E L+ IE A +
Sbjct: 41 QIADQDALARKYITTNKALAKNALKRKKGYEANLMKIENQIDSLETQLTSIEGANLNLET 100
Query: 303 SEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQ-AEKVIVPSYTGIDDED-IEE 358
+A++ GAQA+K+ + V++++ ++++ E ++L + +E + P T DED ++E
Sbjct: 101 MKAMKQGAQAMKQIHGEYDVDKVENTMDDIREQVELADEISEAISRPVGTEFVDEDELDE 160
Query: 359 EFKKLEQE--------------------VECERPK-PTVSKTGVNEPAAS----ESAESL 393
E L++E E E P PTV+K N+PAAS E E+L
Sbjct: 161 ELAMLQEEEKEHKQQTPAQKAPVAKVSAPEEEMPDFPTVNK---NKPAASTEDDEDEEAL 217
Query: 394 RVAFSTIGL 402
+ + +GL
Sbjct: 218 KALQAEMGL 226
>sp|Q2NIH4|RSMH_AYWBP Ribosomal RNA small subunit methyltransferase H OS=Aster yellows
witches'-broom phytoplasma (strain AYWB) GN=rsmH PE=3
SV=2
Length = 303
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 293 IENAESTKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGID 352
++ S KK+ +A++I +EL+ + LE+S+DL K +++V S+ ++
Sbjct: 190 LQKGHSAKKIFQALRIEVN---------QELESLKQALEQSLDLLKPNARIVVISFHSLE 240
Query: 353 DEDIEEEFKK 362
D I+ FKK
Sbjct: 241 DRIIKHFFKK 250
>sp|Q6NRM7|CHMP3_XENLA Charged multivesicular body protein 3 OS=Xenopus laevis GN=chmp3
PE=2 SV=3
Length = 220
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 68/132 (51%), Gaps = 2/132 (1%)
Query: 235 QLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIE 294
Q+ I R E ++S S GN+ + AK++ +K++ K + + VL ++
Sbjct: 33 QIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVQSKKAVNKLYASKAHMNSVLMSMK 92
Query: 295 NAESTKKVSEAIQIGAQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGID 352
N + +VS ++Q + +K +N + + E+Q + EL + + E+++ ++ G++
Sbjct: 93 NQLAVLRVSGSLQKSTEVMKAMQNLVKLPEIQATMRELSKEMMKAGIIEEMLEDTFEGME 152
Query: 353 DEDIEEEFKKLE 364
D+D EE ++E
Sbjct: 153 DQDEMEEQAEME 164
>sp|Q6FW96|SNF7_CANGA Vacuolar-sorting protein SNF7 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SNF7
PE=3 SV=1
Length = 228
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 254 LHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAI 313
L GNKT+A K+ K+ + K S ++ +E+ L IE+A + A++ GA+A+
Sbjct: 53 LTRGNKTMAKNALKKKKVYEGQLVKLESQMDSLEQQLFSIESANLNLETMRAMKQGAKAM 112
Query: 314 KK--NKISVEELQLCLEELEESIDLQKQAEKVIV-PSYTGIDD 353
K + + ++ + ++E+ E ++L ++ I P YTG ++
Sbjct: 113 KSIHSGLDIDRVDETMDEIREQVELGEEISDAISRPLYTGANE 155
>sp|Q5BKM3|CHMP3_XENTR Charged multivesicular body protein 3 OS=Xenopus tropicalis
GN=chmp3 PE=2 SV=4
Length = 220
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 68/132 (51%), Gaps = 2/132 (1%)
Query: 235 QLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIE 294
Q+ I R E ++S S GN+ + AK++ +K++ K + + VL ++
Sbjct: 33 QIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVHSKKAVNKLYASKAHMNSVLMSMK 92
Query: 295 NAESTKKVSEAIQIGAQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGID 352
N + +VS ++Q + +K +N + + E+Q + +L + + E+++ ++ G++
Sbjct: 93 NQLAVLRVSGSLQKSTEVMKAMQNLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTFEGME 152
Query: 353 DEDIEEEFKKLE 364
D+D EE ++E
Sbjct: 153 DQDEMEEQAEME 164
>sp|Q8R6F5|RSMH_FUSNN Ribosomal RNA small subunit methyltransferase H OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=rsmH PE=3 SV=1
Length = 314
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 264 RHAKQL-KLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNKISVE- 321
RHA+++ KL E R+ +S + + ++++LI+ A + + QAI+ I V
Sbjct: 163 RHARKIAKLIVEERK--SSPIEKTSDLITLIKRAYPERASKHPAKKTFQAIR---IEVNR 217
Query: 322 ELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQEVECERPKPTVSKTGV 381
EL++ + ++++L K ++ + ++ ++D ++ +FK L +C + P GV
Sbjct: 218 ELEVLENAMSKAVELLKVGGRLAIITFHSLEDRIVKNKFKDLATACKCPKDIPICVCGGV 277
>sp|P0C149|SNF7_MAGO7 Vacuolar-sorting protein SNF7 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=SNF7 PE=3 SV=1
Length = 226
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 275 SREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEE 332
S ++ S + +E+ ++ IE+A + EA++ +A++ K++VE++ +++L E
Sbjct: 76 SLDQTLSQIGTLEQQINAIESANINMETLEAMKKAGKAMEDIHGKLTVEKVDETMDKLRE 135
Query: 333 SIDLQKQAEKVIVPSYTG---IDDEDIEEEFKKLEQE 366
L ++ I + G IDD D+E+E + +EQE
Sbjct: 136 QNALSEEIVNAITNNQLGNEAIDDADLEDELEAMEQE 172
>sp|A7HN59|SYA_FERNB Alanine--tRNA ligase OS=Fervidobacterium nodosum (strain ATCC 35602
/ DSM 5306 / Rt17-B1) GN=alaS PE=3 SV=1
Length = 867
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 19/105 (18%)
Query: 230 EKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLK-----------------LT 272
EK+Q Q+D I R M +A LHS + V H +Q LT
Sbjct: 540 EKVQSQVDEIKRKSTMRNHTATHILHSALRKVLGSHVRQAGSLVEPTRLRFDFTHYQALT 599
Query: 273 KESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNK 317
K+ K +++N V +L I K EA++ GA A+ + K
Sbjct: 600 KDEITKIENIVNEV--ILKAIPVVTEIKSYDEAVKEGAMALFEEK 642
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,708,126
Number of Sequences: 539616
Number of extensions: 5685794
Number of successful extensions: 25775
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 475
Number of HSP's that attempted gapping in prelim test: 25311
Number of HSP's gapped (non-prelim): 889
length of query: 432
length of database: 191,569,459
effective HSP length: 120
effective length of query: 312
effective length of database: 126,815,539
effective search space: 39566448168
effective search space used: 39566448168
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 63 (28.9 bits)