Query 013999
Match_columns 432
No_of_seqs 210 out of 727
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 03:39:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013999.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013999hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4abm_A Charged multivesicular 99.4 1.7E-12 5.8E-17 101.8 11.4 76 218-294 4-79 (79)
2 2gd5_A Charged multivesicular 99.3 1.3E-12 4.5E-17 118.9 7.2 146 217-366 11-167 (179)
3 3um3_B Charged multivesicular 99.3 1.9E-11 6.4E-16 100.5 9.8 55 316-370 1-58 (104)
4 3frt_A Charged multivesicular 98.8 1.5E-08 5.3E-13 94.3 9.2 150 222-371 16-172 (218)
5 1xb4_A VPS25, hypothetical 23. 98.7 3.2E-08 1.1E-12 90.8 8.7 151 31-206 15-200 (202)
6 3cuq_C Vacuolar protein-sortin 98.6 6.1E-08 2.1E-12 87.2 7.3 141 32-205 19-175 (176)
7 2luh_B Vacuolar protein-sortin 98.5 1.4E-08 4.8E-13 73.6 0.2 50 318-367 1-55 (59)
8 3htu_B Vacuolar protein-sortin 97.3 0.00026 8.8E-09 47.3 4.5 36 213-248 2-37 (39)
9 2lxm_B Charged multivesicular 97.2 0.00021 7.1E-09 51.6 3.1 37 334-370 1-39 (57)
10 3htu_A Vacuolar protein-sortin 93.0 0.18 6.2E-06 38.9 5.7 67 136-206 4-79 (79)
11 2gd5_A Charged multivesicular 89.6 0.61 2.1E-05 41.5 6.5 89 224-313 11-100 (179)
12 2lw1_A ABC transporter ATP-bin 81.6 13 0.00045 28.8 9.8 68 223-290 18-86 (89)
13 3na7_A HP0958; flagellar bioge 81.2 27 0.00094 32.4 13.7 119 217-344 15-134 (256)
14 3uly_B Charged multivesicular 77.8 1.4 4.8E-05 32.8 2.6 21 350-370 7-27 (69)
15 2pjp_A Selenocysteine-specific 62.1 29 0.00099 28.1 7.8 54 129-187 54-108 (121)
16 3frt_A Charged multivesicular 59.3 30 0.001 31.6 8.0 109 220-331 21-148 (218)
17 1lva_A Selenocysteine-specific 55.7 1E+02 0.0035 28.4 11.4 61 128-198 190-251 (258)
18 4abm_A Charged multivesicular 48.4 86 0.003 23.7 8.1 69 224-297 3-75 (79)
19 3kyj_A CHEA3, putative histidi 47.1 69 0.0024 26.9 7.9 68 270-337 11-80 (144)
20 2lp4_A Chemotaxis protein CHEA 46.2 1E+02 0.0035 27.7 9.5 45 271-315 8-52 (225)
21 3gn4_A Myosin-VI; unconvention 41.7 1.6E+02 0.0056 25.0 10.8 92 234-332 39-135 (148)
22 2lch_A Protein OR38; structura 41.1 89 0.003 24.7 7.4 65 270-334 6-72 (113)
23 3qne_A Seryl-tRNA synthetase, 40.5 1.3E+02 0.0044 30.8 10.0 76 257-338 13-88 (485)
24 3hho_A CO-chaperone protein HS 39.7 1.8E+02 0.0063 25.0 9.8 50 237-286 123-172 (174)
25 2dfs_A Myosin-5A; myosin-V, in 39.7 1.6E+02 0.0055 33.2 11.5 16 229-244 923-938 (1080)
26 2pnv_A Small conductance calci 39.5 63 0.0022 21.6 5.0 28 222-249 11-38 (43)
27 2inr_A DNA topoisomerase 4 sub 38.3 2.4E+02 0.0081 29.0 11.5 88 280-369 403-500 (514)
28 2lf0_A Uncharacterized protein 37.1 93 0.0032 25.5 6.6 52 231-282 7-58 (123)
29 1tqg_A Chemotaxis protein CHEA 37.0 1.2E+02 0.0042 23.3 7.5 65 270-334 5-71 (105)
30 3ghg_A Fibrinogen alpha chain; 35.2 1.6E+02 0.0054 30.3 9.4 30 265-294 93-123 (562)
31 3m91_B Prokaryotic ubiquitin-l 34.5 19 0.00066 24.1 1.8 19 319-337 12-30 (44)
32 3na7_A HP0958; flagellar bioge 33.2 2.8E+02 0.0097 25.3 12.7 24 321-344 104-127 (256)
33 2l5g_B Putative uncharacterize 32.1 1.1E+02 0.0038 20.3 5.2 27 225-251 7-33 (42)
34 2dq0_A Seryl-tRNA synthetase; 31.6 1.9E+02 0.0067 29.0 9.7 68 220-289 31-98 (455)
35 3ilw_A DNA gyrase subunit A; D 31.6 2.7E+02 0.0091 28.3 10.5 91 276-368 361-461 (470)
36 4dci_A Uncharacterized protein 31.5 2.4E+02 0.0083 24.0 10.2 76 219-294 28-104 (150)
37 2ld6_A Chemotaxis protein CHEA 30.4 1.7E+02 0.0058 24.1 7.7 67 270-336 4-72 (139)
38 1wle_A Seryl-tRNA synthetase; 29.9 2.9E+02 0.01 28.2 10.7 67 221-287 71-143 (501)
39 2xcs_B DNA gyrase subunit B, D 28.6 4.4E+02 0.015 28.1 12.0 88 279-368 585-682 (692)
40 1sf9_A YFHH hypothetical prote 28.3 2.5E+02 0.0086 23.1 8.2 60 217-276 10-74 (128)
41 3oja_B Anopheles plasmodium-re 28.3 4.7E+02 0.016 26.5 12.3 24 222-245 458-481 (597)
42 3lss_A Seryl-tRNA synthetase; 27.9 3.5E+02 0.012 27.5 10.8 33 221-253 38-70 (484)
43 1i84_S Smooth muscle myosin he 27.3 2.9E+02 0.0099 31.3 11.1 35 215-249 859-893 (1184)
44 2dq0_A Seryl-tRNA synthetase; 27.2 3.2E+02 0.011 27.4 10.4 75 258-338 10-86 (455)
45 3qne_A Seryl-tRNA synthetase, 27.0 3.2E+02 0.011 27.8 10.3 68 221-290 34-101 (485)
46 1fpo_A HSC20, chaperone protei 26.9 2.2E+02 0.0076 24.4 8.0 47 237-283 119-165 (171)
47 3ghg_C Fibrinogen gamma chain; 26.1 4.9E+02 0.017 25.8 11.3 73 217-289 35-113 (411)
48 4dzn_A Coiled-coil peptide CC- 26.0 1.1E+02 0.0039 18.4 4.7 26 222-247 4-29 (33)
49 1ses_A Seryl-tRNA synthetase; 25.5 2.9E+02 0.01 27.4 9.6 67 220-290 28-94 (421)
50 1deq_A Fibrinogen (alpha chain 25.5 4.9E+02 0.017 25.5 13.5 16 282-297 139-154 (390)
51 2nov_A DNA topoisomerase 4 sub 24.7 1.6E+02 0.0054 30.2 7.5 89 279-369 378-476 (496)
52 2eqb_B RAB guanine nucleotide 24.7 2.3E+02 0.0079 22.3 6.8 66 224-305 9-74 (97)
53 3uo3_A J-type CO-chaperone JAC 24.2 2.4E+02 0.0083 24.5 7.8 44 237-280 128-171 (181)
54 2v71_A Nuclear distribution pr 24.1 3.7E+02 0.013 23.7 10.8 35 214-248 4-38 (189)
55 1i5n_A Chemotaxis protein CHEA 23.2 1.4E+02 0.0047 24.9 5.8 66 270-335 7-74 (146)
56 3ibp_A Chromosome partition pr 22.5 5E+02 0.017 24.6 10.3 68 273-340 13-81 (302)
57 3mq9_A Bone marrow stromal ant 22.3 3.8E+02 0.013 26.4 9.9 9 140-148 287-295 (471)
58 3t9o_A DGC, diguanylate cyclas 21.8 2.1E+02 0.0072 23.5 6.6 56 235-295 75-130 (135)
59 2l5g_B Putative uncharacterize 21.5 1.3E+02 0.0043 20.0 3.9 23 218-240 14-36 (42)
60 1ng6_A Hypothetical protein YQ 21.4 3.6E+02 0.012 22.5 11.8 61 244-307 5-69 (148)
61 1i84_S Smooth muscle myosin he 21.4 2.8E+02 0.0097 31.4 9.5 38 216-253 853-890 (1184)
62 3bvo_A CO-chaperone protein HS 21.1 3.5E+02 0.012 24.0 8.4 44 238-281 159-202 (207)
63 4hg1_A Putative cytoplasmic pr 21.1 27 0.00092 30.7 0.8 20 10-29 109-128 (225)
No 1
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=99.41 E-value=1.7e-12 Score=101.77 Aligned_cols=76 Identities=20% Similarity=0.139 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 013999 218 LDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIE 294 (432)
Q Consensus 218 ~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~~Ie 294 (432)
...+|++|+.+++.|+++...|+.+|+.....||.++ .++|..|+.|||+||++|+.|+++.+++.|||+++..||
T Consensus 4 ~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~iE 79 (79)
T 4abm_A 4 EQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALE 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999999999999999999 677999999999999999999999999999999999885
No 2
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=99.33 E-value=1.3e-12 Score=118.87 Aligned_cols=146 Identities=18% Similarity=0.221 Sum_probs=115.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 013999 217 SLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKT----VALRHAKQLKLTKESREKCTSLLNRVEEVLSL 292 (432)
Q Consensus 217 e~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~----~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~~ 292 (432)
........|+.+...|.+++..|+.+-..+...+|.+.++|++. .|+.++|.||. ..++.....+|+.+-.+
T Consensus 11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~----~~~l~~~~a~l~~v~~~ 86 (179)
T 2gd5_A 11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKA----VSKLYASKAHMNSVLMG 86 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999999999999876 68888888875 56666788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC-----CHHHHHHHHHHHHH
Q 013999 293 IENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGI-----DDEDIEEEFKKLEQ 365 (432)
Q Consensus 293 Ie~a~~n~~v~~al~~g~~aLk~--~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~~~~-----De~ELe~EL~~Le~ 365 (432)
++.+.++..|..+|+.++++|+. ..+++++|..+|+++.++++..++|+++|+..+++. +++|.++|+++...
T Consensus 87 lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kVl~ 166 (179)
T 2gd5_A 87 MKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILF 166 (179)
T ss_dssp HHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999998 477999999999999999999999999997765432 34444455555444
Q ss_pred H
Q 013999 366 E 366 (432)
Q Consensus 366 E 366 (432)
|
T Consensus 167 E 167 (179)
T 2gd5_A 167 E 167 (179)
T ss_dssp C
T ss_pred H
Confidence 3
No 3
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=99.26 E-value=1.9e-11 Score=100.49 Aligned_cols=55 Identities=15% Similarity=0.377 Sum_probs=49.4
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHhhCCCC---CCCCHHHHHHHHHHHHHHHhhc
Q 013999 316 NKISVEELQLCLEELEESIDLQKQAEKVIVPSY---TGIDDEDIEEEFKKLEQEVECE 370 (432)
Q Consensus 316 ~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~---~~~De~ELe~EL~~Le~E~~~~ 370 (432)
++|++|+|+++||+++|++++++||+++|++++ .++|++||++||++|+++...+
T Consensus 1 ~~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~ 58 (104)
T 3um3_B 1 DNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDK 58 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999998866 4789999999999999886443
No 4
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=98.78 E-value=1.5e-08 Score=94.25 Aligned_cols=150 Identities=18% Similarity=0.246 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013999 222 VLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKK 301 (432)
Q Consensus 222 I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~~Ie~a~~n~~ 301 (432)
=-.|+.+...|.+++..|+++=......+|.+.++|+...|+-|-|.--..-+...++...-.+|..|-.++..+.++..
T Consensus 16 ~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~ 95 (218)
T 3frt_A 16 SLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLR 95 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788889999999999999988999999999999998877766666666666777888888999999999999999999
Q ss_pred HHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-----CCCHHHHHHHHHHHHHHHhhcC
Q 013999 302 VSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIVPSYT-----GIDDEDIEEEFKKLEQEVECER 371 (432)
Q Consensus 302 v~~al~~g~~aLk~--~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~~-----~~De~ELe~EL~~Le~E~~~~~ 371 (432)
|..+|+.++++|+. ..+++.+|..+|+++..++...+=+++++....+ +.+++|.++|.++...|.....
T Consensus 96 v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~~~~ 172 (218)
T 3frt_A 96 VAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGA 172 (218)
T ss_dssp ---CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHhHhH
Confidence 99999999999998 4789999999999999999987666666644332 2235667777777777765443
No 5
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=98.71 E-value=3.2e-08 Score=90.80 Aligned_cols=151 Identities=18% Similarity=0.254 Sum_probs=103.5
Q ss_pred CCCC--CCcHHHHHHHHHHHHHHHHHCCceEECccc-cch-------------------hhhhc----CCCCCCCHHHHH
Q 013999 31 SGQR--SDWEPKFQFWKNLILKIARHFSLAIIHPSQ-VKN-------------------EWFNR----GGLTPLCFDDVL 84 (432)
Q Consensus 31 ~~n~--~gy~ani~fW~~lI~~~~~~~~~~~~~~~~-l~~-------------------~~f~r----~~~~P~~L~~Vi 84 (432)
..|| +-+...+..|++||++||++++..++++.+ ... .+|.. +...|-.+..||
T Consensus 15 TlQPn~~Tr~~Ql~~W~~LIL~ycr~~ki~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pLF~N~~I~RrLs~e~~~~Il 94 (202)
T 1xb4_A 15 TRQPNSLTRRQQISTWIDIISQYCKTKKIWYMSVDGTVINDNELDSGSTDNDDSKKISKNLFNNEDIQRSVSQVFIDEIW 94 (202)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHTTCCEEETTSBBCCC-----------------CBTTEETTTTEECCHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHhCeeEeccccccccccccccccccccccccccCCCcCCccccCcCCHHHHHHHH
Confidence 3355 789999999999999999999998887765 221 35754 235677899999
Q ss_pred HHHHHCCCeeehhhhhcccCCchhHHHHhhhhhccccCCCcccccCccEeehHHHHHHHHHHHHHHhhccccCccccchh
Q 013999 85 FVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMK 164 (432)
Q Consensus 85 ~emv~~g~li~~~ef~~~~~gw~swl~~~~~~~~~~~~~~~~~l~~~~~V~~~~l~~~a~~i~~~~~~~~~~sd~v~s~~ 164 (432)
++|++.|... |.++..+ ++. +..+..-+|+|..+++.|+.|++++.++... ..|+|+.
T Consensus 95 ~~Lv~~g~ae----w~d~~~~--------------~~~---~~~k~~~~I~Wrtp~EWa~~I~~Wv~~tG~~-~sV~Tly 152 (202)
T 1xb4_A 95 SQMTKEGKCL----PIDQSGR--------------RSS---NTTTTRYFILWKSLDSWASLILQWFEDSGKL-NQVITLY 152 (202)
T ss_dssp HHHHHTTSEE----EESSSSB--------------CC-----CCCCEEEECSSCHHHHHHHHHHHHHTTSCT-TSCEEHH
T ss_pred HHHHhcCCeE----EeCCCCc--------------ccc---cccCceEEEEeCCHHHHHHHHHHHHHhcCCc-CcEEEee
Confidence 9999998433 3322111 000 0112346999999999999999999986655 5699988
Q ss_pred hHHhhhCC--------cch-HHHHHHHHhccCccceeeeecCCceeEEEee
Q 013999 165 KFQDKCGG--------QDE-ASAVLSFLTGRGKALYLSISKNEFTEGVKVS 206 (432)
Q Consensus 165 ef~~~~~~--------~~d-~~vlL~yL~~~~~~k~v~~~~~~~~~~IKf~ 206 (432)
|+.+--.. ..+ +.-+|..|...||+.-+. +++..||||.
T Consensus 153 EL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~GKaqi~~---~~~~~GVKF~ 200 (202)
T 1xb4_A 153 ELSEGDETVNWEFHRMPESLLYYCLKPLCDRNRATMLK---DENDKVIAIK 200 (202)
T ss_dssp HHC--CCSCCSTTTTCCHHHHHHHHHHHHGGGCCEEEE---CTTSCEEEEE
T ss_pred hcccCCCCCCccccCCCHHHHHHHHHHHHHcCCEEEee---cCCCCeEEEE
Confidence 88764221 112 456888999999874442 2323789985
No 6
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=98.61 E-value=6.1e-08 Score=87.15 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=101.0
Q ss_pred CCC--CCcHHHHHHHHHHHHHHHHHCCceEECccc-cchhhhhc----CCCCCCCHHHHHHHHHHCCCeeehhhhhcccC
Q 013999 32 GQR--SDWEPKFQFWKNLILKIARHFSLAIIHPSQ-VKNEWFNR----GGLTPLCFDDVLFVMYNEGDVVRSVDLVDAAS 104 (432)
Q Consensus 32 ~n~--~gy~ani~fW~~lI~~~~~~~~~~~~~~~~-l~~~~f~r----~~~~P~~L~~Vi~emv~~g~li~~~ef~~~~~ 104 (432)
.|| +-+...+..|++||++||++++..++++.+ ....+|.. +...|-.+..|+++|++.|... +.++.
T Consensus 19 lQpn~~Tr~kQl~~W~~LIl~ycr~~k~~~l~~~~~~~~pLF~N~~I~R~Ls~e~~~~il~~L~~~g~ae----w~d~~- 93 (176)
T 3cuq_C 19 LQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNNVKLQRKLPVESIQIVLEELRKKGNLE----WLDKS- 93 (176)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHTCCEEEHHHHHTSTTSEETTTTEECCHHHHHHHHHHHHHHTSEE----ECSSS-
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHhCeeEeeccccccCCCcCCccccCcCCHHHHHHHHHHHHhcCCce----eecCC-
Confidence 355 789999999999999999999998888765 32346764 3457778999999999988332 22110
Q ss_pred CchhHHHHhhhhhccccCCCcccccCccEeehHHHHHHHHHHHHHHhhccccCccccchhhHHhhhCC------cch---
Q 013999 105 GRLTQLFRKVRSLMARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGG------QDE--- 175 (432)
Q Consensus 105 gw~swl~~~~~~~~~~~~~~~~~l~~~~~V~~~~l~~~a~~i~~~~~~~~~~sd~v~s~~ef~~~~~~------~~d--- 175 (432)
...-+|+|..+++.|+.|++++.++... ..|+|+.|+.+--.. .-|
T Consensus 94 ------------------------~~~~~I~Wrt~~eWa~~iy~wv~~~G~~-~sV~TlyEL~~Gd~t~~~ef~gld~~v 148 (176)
T 3cuq_C 94 ------------------------KSSFLIMWRRPEEWGKLIYQWVSRSGQN-NSVFTLYELTNGEDTEDEEFHGLDEAT 148 (176)
T ss_dssp ------------------------SSEEEECSSCHHHHHHHHHHHHHTTTCC-SCEEEHHHHHHCTTTTTSTTTTCCHHH
T ss_pred ------------------------CCEEEEEeCCHHHHHHHHHHHHHhcCCc-CcEEEEeeeccCCCCCCCcccCCCHHH
Confidence 1235788888888899999999887655 569999988764221 112
Q ss_pred HHHHHHHHhccCccceeeeecCCceeEEEe
Q 013999 176 ASAVLSFLTGRGKALYLSISKNEFTEGVKV 205 (432)
Q Consensus 176 ~~vlL~yL~~~~~~k~v~~~~~~~~~~IKf 205 (432)
+.-+|..|...||+.-+ .+++..||||
T Consensus 149 L~kaL~~L~~~gKaql~---~~~~~~GVKF 175 (176)
T 3cuq_C 149 LLRALQALQQEHKAEII---TVSDGRGVKF 175 (176)
T ss_dssp HHHHHHHHHHHTSEEEC---CTTTSCEEEE
T ss_pred HHHHHHHHHHcCCeEEe---ecCCCCceee
Confidence 44578889988887443 2333378998
No 7
>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.4e-08 Score=73.58 Aligned_cols=50 Identities=24% Similarity=0.411 Sum_probs=44.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-----CCCHHHHHHHHHHHHHHH
Q 013999 318 ISVEELQLCLEELEESIDLQKQAEKVIVPSYT-----GIDDEDIEEEFKKLEQEV 367 (432)
Q Consensus 318 i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~~-----~~De~ELe~EL~~Le~E~ 367 (432)
|++++|++++|+|.+.++..+||+++|+.++. ++|++||++||++|..|.
T Consensus 1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de~ 55 (59)
T 2luh_B 1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQED 55 (59)
T ss_dssp CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhccc
Confidence 57899999999999999999999999976432 589999999999999874
No 8
>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=97.33 E-value=0.00026 Score=47.30 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=31.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013999 213 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRK 248 (432)
Q Consensus 213 ~~Ite~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~ 248 (432)
+.||+.|+||++||.++++|.++...++..++...+
T Consensus 2 skiT~qDrAIL~LK~QRDkL~qyqkri~~~~~rE~e 37 (39)
T 3htu_B 2 SRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERA 37 (39)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 589999999999999999999999999998887554
No 9
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=97.20 E-value=0.00021 Score=51.62 Aligned_cols=37 Identities=22% Similarity=0.494 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhCCCC--CCCCHHHHHHHHHHHHHHHhhc
Q 013999 334 IDLQKQAEKVIVPSY--TGIDDEDIEEEFKKLEQEVECE 370 (432)
Q Consensus 334 ~~~~~EI~~~L~~~~--~~~De~ELe~EL~~Le~E~~~~ 370 (432)
|+..+||+++|++++ .++||+||++||++|++|...+
T Consensus 1 ~e~a~EIqealsr~~g~~diDEdEL~aELe~LeqE~~~~ 39 (57)
T 2lxm_B 1 MEDANEINEALSRSYGTPELDEDDLEAELDALGDELLAD 39 (57)
T ss_dssp ---------------CCCCCCHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 467899999998754 3799999999999999987543
No 10
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=93.00 E-value=0.18 Score=38.91 Aligned_cols=67 Identities=16% Similarity=0.129 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHhhccccCccccchhhHHhhh-------CC-cch-HHHHHHHHhccCccceeeeecCCceeEEEee
Q 013999 136 MEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKC-------GG-QDE-ASAVLSFLTGRGKALYLSISKNEFTEGVKVS 206 (432)
Q Consensus 136 ~~~l~~~a~~i~~~~~~~~~~sd~v~s~~ef~~~~-------~~-~~d-~~vlL~yL~~~~~~k~v~~~~~~~~~~IKf~ 206 (432)
|..+++.|+.|++++.++... ..|+|+.|+.+-- ++ +.+ +.-+|..|...+|+.-+. +++.++|||.
T Consensus 4 WrspeeWa~~Iy~Wv~~~G~~-~sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~gkA~i~~---~~~~~GVKFf 79 (79)
T 3htu_A 4 GRRPEEWGKLIYQWVSRSGQN-NSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEIIT---VSDGRGVKFF 79 (79)
T ss_dssp -CCHHHHHHHHHHHHHTTCCS-CSEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTTSEEEEC---CTTSCEEEEC
T ss_pred cCCHHHHHHHHHHHHHHcCCC-CceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCEEEEe---cCCCceeeeC
Confidence 344567799999999886655 5699999988722 11 222 345788999999874442 2323589983
No 11
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=89.63 E-value=0.61 Score=41.55 Aligned_cols=89 Identities=9% Similarity=0.007 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013999 224 HLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVAL-RHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKV 302 (432)
Q Consensus 224 ~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~-~~Lr~KK~~ek~l~~~~~~l~~le~~l~~Ie~a~~n~~v 302 (432)
.|+.....|.+.+..|++++..+...-+.... .-|..|+ .....-|.+=+.+-+.-.+..+|..+..+|+........
T Consensus 11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~-~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt 89 (179)
T 2gd5_A 11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKR-SVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 89 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888999999999988887766553321 1122222 122233556677777777888888888888877776555
Q ss_pred HHHHHHHHHHH
Q 013999 303 SEAIQIGAQAI 313 (432)
Q Consensus 303 ~~al~~g~~aL 313 (432)
..+...-..+|
T Consensus 90 ~~~~~~v~~am 100 (179)
T 2gd5_A 90 QLAVLRVAGSL 100 (179)
T ss_dssp HHHHHHHTSSC
T ss_pred HHHHHHHHHHH
Confidence 54433333333
No 12
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=81.59 E-value=13 Score=28.81 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 013999 223 LHLIWTVEKLQLQLDIIDRHYEMSRKSALA-SLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVL 290 (432)
Q Consensus 223 ~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~-~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l 290 (432)
++.+.-++.|..+|..|+.+|..+....-. .+-..+......++.+...++..|+.+......|+.+.
T Consensus 18 ykeqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~~ 86 (89)
T 2lw1_A 18 YKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEALK 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 678888999999999999999998877533 22345677777888899999999999988887776653
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=81.22 E-value=27 Score=32.35 Aligned_cols=119 Identities=14% Similarity=0.167 Sum_probs=60.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 013999 217 SLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENA 296 (432)
Q Consensus 217 e~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~~Ie~a 296 (432)
..|..|..|+..+..|...+..|+.++..+...+-.. +.....+=+..+.++..++.........+..+.. +
T Consensus 15 ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~-----~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~---v 86 (256)
T 3na7_A 15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNL-----EEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE---I 86 (256)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---c
Confidence 4666777777777777777777777776666543221 2223333344455555555555555555554432 2
Q ss_pred HHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 013999 297 ESTKKVSEAIQIGAQAIKK-NKISVEELQLCLEELEESIDLQKQAEKVI 344 (432)
Q Consensus 297 ~~n~~v~~al~~g~~aLk~-~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L 344 (432)
. |..=+++|..=...++. ...--+.+-.+|+.+.+.....++....+
T Consensus 87 ~-~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l 134 (256)
T 3na7_A 87 K-SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134 (256)
T ss_dssp S-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33334555555555543 22333444444444444433333333333
No 14
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B
Probab=77.78 E-value=1.4 Score=32.85 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHHHHHHhhc
Q 013999 350 GIDDEDIEEEFKKLEQEVECE 370 (432)
Q Consensus 350 ~~De~ELe~EL~~Le~E~~~~ 370 (432)
++||+||++||++|..|...+
T Consensus 7 diDE~eL~aELdaL~~e~~~~ 27 (69)
T 3uly_B 7 ELDEDDLEAELDALGDELLAD 27 (69)
T ss_pred CCCHHHHHHHHHHHHHHHhcc
Confidence 699999999999999887543
No 15
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=62.06 E-value=29 Score=28.12 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=42.4
Q ss_pred cCccEeehHHHHHHHHHHHHHHhhccccCccccchhhHHhhhCCcchHH-HHHHHHhccC
Q 013999 129 LKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEAS-AVLSFLTGRG 187 (432)
Q Consensus 129 ~~~~~V~~~~l~~~a~~i~~~~~~~~~~sd~v~s~~ef~~~~~~~~d~~-vlL~yL~~~~ 187 (432)
.++-|++.+.+.+..+.|.+.+..+. -+|..+|.+.++.+.-+- .+|.||-+.|
T Consensus 54 ~~~~~~~~~~~~~~~~~l~~~~~~~~-----~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g 108 (121)
T 2pjp_A 54 VKDRYYRNDRIVEFANMIRDLDQECG-----STCAADFRDRLGVGRKLAIQILEYFDRIG 108 (121)
T ss_dssp ETTEEEEHHHHHHHHHHHHHHHHHHS-----SEEHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred cCCceECHHHHHHHHHHHHHHHHHCC-----CccHHHHHHHHCCcHHHHHHHHHHHhhcC
Confidence 46789999999999999999887753 478999999998644333 5888997555
No 16
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=59.31 E-value=30 Score=31.60 Aligned_cols=109 Identities=16% Similarity=0.140 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHH
Q 013999 220 YDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESRE---KCTSLLNRVEEVLSLIENA 296 (432)
Q Consensus 220 ~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~---~~~~~l~~le~~l~~Ie~a 296 (432)
..+-+|-..+..|+++...+..+|...-. ..-..+-|..|+.+.|.||...+.+. ++.+--.+|+++.....-+
T Consensus 21 ~~~R~LdR~~~kle~eEkk~~~~IKkaak---kg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v~ 97 (218)
T 3frt_A 21 KEMRVVDRQIRDIQREEEKVKRSVKDAAK---KGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVA 97 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544322 22223346677777777776665543 4444455556665555555
Q ss_pred HHHHHHHHHHHHHHHHHHh----------------cCCChHHHHHHHHHHH
Q 013999 297 ESTKKVSEAIQIGAQAIKK----------------NKISVEELQLCLEELE 331 (432)
Q Consensus 297 ~~n~~v~~al~~g~~aLk~----------------~~i~~e~Ve~~~ddi~ 331 (432)
.+=..+..+|+..++.++- .+|.-|=+++.|+++.
T Consensus 98 ~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~ 148 (218)
T 3frt_A 98 GSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMD 148 (218)
T ss_dssp -CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccc
Confidence 5555566666666665531 2555566666665543
No 17
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=55.74 E-value=1e+02 Score=28.36 Aligned_cols=61 Identities=10% Similarity=0.162 Sum_probs=46.5
Q ss_pred ccCccEeehHHHHHHHHHHHHHHhhccccCccccchhhHHhhhCCcchHH-HHHHHHhccCccceeeeecCC
Q 013999 128 LLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEAS-AVLSFLTGRGKALYLSISKNE 198 (432)
Q Consensus 128 l~~~~~V~~~~l~~~a~~i~~~~~~~~~~sd~v~s~~ef~~~~~~~~d~~-vlL~yL~~~~~~k~v~~~~~~ 198 (432)
..++.|++.+.+.+..+.+.+.+ .+ .-+|..+|++.++.+.-+- .+|.||-+.| ++.+.||
T Consensus 190 l~~~~~~~~~~~~~~~~~l~~~~-~~-----~~it~a~~Rd~lg~SRK~aIplLE~~Dr~g----~TrR~gd 251 (258)
T 1lva_A 190 INDEFYWHRQALGEAREVIKNLA-ST-----GPFGLAEARDALGSSRKYVLPLLEYLDQVK----FTRRVGD 251 (258)
T ss_dssp SSSSBEEEHHHHHHHHHHHHHHH-TT-----SCBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEETT
T ss_pred ecCCeEEcHHHHHHHHHHHHHHH-hc-----CCcCHHHHHHHhCCcHHHHHHHHHHHhhcC----ceeeeCC
Confidence 45789999999999999999988 53 2588999999999854443 5888997655 4444444
No 18
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=48.40 E-value=86 Score=23.71 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHHHHH---HHHhHHHHHHHHHHHHHHHH
Q 013999 224 HLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLK-LTKESRE---KCTSLLNRVEEVLSLIENAE 297 (432)
Q Consensus 224 ~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK-~~ek~l~---~~~~~l~~le~~l~~Ie~a~ 297 (432)
..+.++..|..+++.|+.+...+...+-. ....|+.++.+.| .+-..|- ...+++.++...+.+||.-.
T Consensus 3 ~~~~AI~~Lr~~~d~L~kkq~~L~~~i~~-----e~~~Ak~~~~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~ 75 (79)
T 4abm_A 3 MEQEAIQRLRDTEEMLSKKQEFLEKKIEQ-----ELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQR 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999999888877653 3456676664332 2222333 23566777777777776544
No 19
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=47.14 E-value=69 Score=26.94 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHH
Q 013999 270 KLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKN--KISVEELQLCLEELEESIDLQ 337 (432)
Q Consensus 270 K~~ek~l~~~~~~l~~le~~l~~Ie~a~~n~~v~~al~~g~~aLk~~--~i~~e~Ve~~~ddi~E~~~~~ 337 (432)
.+++-.++.....+..++..+..++..-.+...++++-.+...||-. -++.+.|.++--.+++..+..
T Consensus 11 ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~l 80 (144)
T 3kyj_A 11 EIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLV 80 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHH
Confidence 46678888999999999999999999888999999999999999973 347777776666666555543
No 20
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=46.20 E-value=1e+02 Score=27.68 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013999 271 LTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK 315 (432)
Q Consensus 271 ~~ek~l~~~~~~l~~le~~l~~Ie~a~~n~~v~~al~~g~~aLk~ 315 (432)
+++-.++.....|.++++.+..++..-.+...++++-.+..+||.
T Consensus 8 ~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG 52 (225)
T 2lp4_A 8 FYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKG 52 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh
Confidence 567788888999999999999999988899999999999999996
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=41.67 E-value=1.6e+02 Score=25.00 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 013999 234 LQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAEST-KKVSEAIQIGAQA 312 (432)
Q Consensus 234 ~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~~Ie~a~~n-~~v~~al~~g~~a 312 (432)
.+|..=...+=.....+|.|+..++-.--...+++=+.+.+++++... ++.++...+.. ...+.+++.+.+.
T Consensus 39 nKI~yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~~~~~~~~~-------i~~~Lk~~k~k~~~~v~~~~~~i~~ 111 (148)
T 3gn4_A 39 NKIKYRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLKKRLDKFNE-------VVSALKDGKQEMSKQVKDLEISIDA 111 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 334333333444455566666544333334555555555555544433 33333321111 0123333333333
Q ss_pred ----HHhcCCChHHHHHHHHHHHH
Q 013999 313 ----IKKNKISVEELQLCLEELEE 332 (432)
Q Consensus 313 ----Lk~~~i~~e~Ve~~~ddi~E 332 (432)
+|...|+.+++|..-+.+-.
T Consensus 112 ~i~kIK~~~i~~~~Id~~y~~lv~ 135 (148)
T 3gn4_A 112 LMAKIKSTMMTREQIQKEYDALVK 135 (148)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHH
Confidence 33235677666665555443
No 22
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=41.07 E-value=89 Score=24.67 Aligned_cols=65 Identities=11% Similarity=0.170 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHH
Q 013999 270 KLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKN--KISVEELQLCLEELEESI 334 (432)
Q Consensus 270 K~~ek~l~~~~~~l~~le~~l~~Ie~a~~n~~v~~al~~g~~aLk~~--~i~~e~Ve~~~ddi~E~~ 334 (432)
.+++..++.....+..+++.+..++....+...++++-.+...||-. -++...+.++--.+++..
T Consensus 6 el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l 72 (113)
T 2lch_A 6 EYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLV 72 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHH
Confidence 45677888888999999999999998888999999999999999973 347777776666655443
No 23
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=40.53 E-value=1.3e+02 Score=30.77 Aligned_cols=76 Identities=12% Similarity=0.036 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 013999 257 GNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDL 336 (432)
Q Consensus 257 ~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~~Ie~a~~n~~v~~al~~g~~aLk~~~i~~e~Ve~~~ddi~E~~~~ 336 (432)
|+.+..+..|++|..-...+++....-..-.+++..+++.+.....+.- ....+|..+ ++++.++.++.+..+.
T Consensus 13 ~n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk---~i~~~k~~~---~~~~~l~~~~~~l~~~ 86 (485)
T 3qne_A 13 GDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQK---EIGKRFKAK---EDAKDLIAEKEKLSNE 86 (485)
T ss_dssp CCHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHTT---CCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCc---ccHHHHHHHHHHHHHH
Confidence 4666667777766543223444444444445555555555444433322 112234333 2344555555544443
Q ss_pred HH
Q 013999 337 QK 338 (432)
Q Consensus 337 ~~ 338 (432)
..
T Consensus 87 i~ 88 (485)
T 3qne_A 87 KK 88 (485)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 24
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=39.71 E-value=1.8e+02 Score=25.02 Aligned_cols=50 Identities=8% Similarity=0.082 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 013999 237 DIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRV 286 (432)
Q Consensus 237 ~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~l 286 (432)
..++.++..+......++..++-..|...+++-|.+.+..+.+......|
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~f~~kl~~~i~~~~~~l 172 (174)
T 3hho_A 123 TKVTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEVERVEDQL 172 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556666777777788888999999999999999988877776654443
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=39.70 E-value=1.6e+02 Score=33.22 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 013999 229 VEKLQLQLDIIDRHYE 244 (432)
Q Consensus 229 ~~~L~~~i~~Le~~i~ 244 (432)
...|+.++..|+.+++
T Consensus 923 ~~~LE~kl~eLq~rL~ 938 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKID 938 (1080)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 26
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=39.50 E-value=63 Score=21.63 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013999 222 VLHLIWTVEKLQLQLDIIDRHYEMSRKS 249 (432)
Q Consensus 222 I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ 249 (432)
+..+....+.|++||..||.+++.+...
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888999999999988887754
No 27
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=38.31 E-value=2.4e+02 Score=29.02 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=58.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHh---cCCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 013999 280 TSLLNRVEEVLSLIENAESTKKVSEAIQI-------GAQAIKK---NKISVEELQLCLEELEESIDLQKQAEKVIVPSYT 349 (432)
Q Consensus 280 ~~~l~~le~~l~~Ie~a~~n~~v~~al~~-------g~~aLk~---~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~~ 349 (432)
...+.++.+++.-|..+.+..++...|.. -+++|=. ..++-.+++++.++.++..+..++....|+...
T Consensus 403 ~~a~~~id~vI~iIr~s~~~~~a~~~L~~~f~lse~qa~~IL~m~L~rLT~~e~~kl~~E~~~l~~ei~~l~~iL~~~~- 481 (514)
T 2inr_A 403 IKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD- 481 (514)
T ss_dssp HHHHHSHHHHHHHHHHCCSHHHHHHHHHTTSSCCHHHHHHHHTCCGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHH-
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHhchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHH-
Confidence 33445677777777766665555555543 2333333 267888999999999999999999999996510
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q 013999 350 GIDDEDIEEEFKKLEQEVEC 369 (432)
Q Consensus 350 ~~De~ELe~EL~~Le~E~~~ 369 (432)
.=.+=+-+||.++.+.-.+
T Consensus 482 -~~~~~i~~el~~i~~~yg~ 500 (514)
T 2inr_A 482 -ALLNVIKEELNEIKKKFKS 500 (514)
T ss_dssp -HHHHHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHHHHcCC
Confidence 0024466888888776544
No 28
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=37.15 E-value=93 Score=25.46 Aligned_cols=52 Identities=4% Similarity=-0.056 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 013999 231 KLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSL 282 (432)
Q Consensus 231 ~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~ 282 (432)
.+.+.|+.|..+++.++.+.-.+...|+......+.+.+--+++.++++-..
T Consensus 7 ~~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888777788888888888777777777777665543
No 29
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=36.96 E-value=1.2e+02 Score=23.32 Aligned_cols=65 Identities=9% Similarity=0.112 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHH
Q 013999 270 KLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKN--KISVEELQLCLEELEESI 334 (432)
Q Consensus 270 K~~ek~l~~~~~~l~~le~~l~~Ie~a~~n~~v~~al~~g~~aLk~~--~i~~e~Ve~~~ddi~E~~ 334 (432)
.+++..++.....+..|+..+..++....+...+.++......||-. .++...+..+--.+++..
T Consensus 5 ~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l 71 (105)
T 1tqg_A 5 EYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENIL 71 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHH
Confidence 46677888888899999999999988888889999999999999973 447777777666665544
No 30
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=35.21 E-value=1.6e+02 Score=30.31 Aligned_cols=30 Identities=3% Similarity=0.090 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhHHH-HHHHHHHHHH
Q 013999 265 HAKQLKLTKESREKCTSLLN-RVEEVLSLIE 294 (432)
Q Consensus 265 ~Lr~KK~~ek~l~~~~~~l~-~le~~l~~Ie 294 (432)
+||.+-......++...++. .|+..+..|+
T Consensus 93 ~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLK 123 (562)
T 3ghg_A 93 ILRGDFSSANNRDNTYNRVSEDLRSRIEVLK 123 (562)
T ss_dssp TTSSHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence 33333333334444444443 4444444443
No 31
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=34.52 E-value=19 Score=24.10 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=14.3
Q ss_pred ChHHHHHHHHHHHHHHHHH
Q 013999 319 SVEELQLCLEELEESIDLQ 337 (432)
Q Consensus 319 ~~e~Ve~~~ddi~E~~~~~ 337 (432)
..+++|+++|+|.+.++..
T Consensus 12 ~~~~~D~lLDeId~vLE~N 30 (44)
T 3m91_B 12 LTEETDDLLDEIDDVLEEN 30 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 4567888888888777654
No 32
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=33.19 E-value=2.8e+02 Score=25.26 Aligned_cols=24 Identities=17% Similarity=0.077 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 013999 321 EELQLCLEELEESIDLQKQAEKVI 344 (432)
Q Consensus 321 e~Ve~~~ddi~E~~~~~~EI~~~L 344 (432)
..+..+-+++.+.++..++....+
T Consensus 104 ~~i~~lE~eile~~e~ie~~~~~l 127 (256)
T 3na7_A 104 ERSNQANREIENLQNEIKRKSEKQ 127 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 33
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.11 E-value=1.1e+02 Score=20.28 Aligned_cols=27 Identities=11% Similarity=0.359 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013999 225 LIWTVEKLQLQLDIIDRHYEMSRKSAL 251 (432)
Q Consensus 225 Lk~~~~~L~~~i~~Le~~i~~~~~~ak 251 (432)
|-+.++++...|..-+.+|..+..+-+
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554443
No 34
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=31.63 E-value=1.9e+02 Score=29.04 Aligned_cols=68 Identities=4% Similarity=-0.059 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 013999 220 YDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEV 289 (432)
Q Consensus 220 ~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~ 289 (432)
..|+.|-.....+..+++.|..+...+.+++.+..++|. .+..++.+.+.+-+.+..+...+..++.-
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGE--PVDELLAKSREIVKRIGELENEVEELKKK 98 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--CTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888888877766545542 22333344444444444444444444433
No 35
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=31.56 E-value=2.7e+02 Score=28.27 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=61.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHh---cCCChHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013999 276 REKCTSLLNRVEEVLSLIENAESTKKVSEAIQI-------GAQAIKK---NKISVEELQLCLEELEESIDLQKQAEKVIV 345 (432)
Q Consensus 276 l~~~~~~l~~le~~l~~Ie~a~~n~~v~~al~~-------g~~aLk~---~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~ 345 (432)
|+.+.-.+.++.+++.-|..+.+..+....|.. -++++=. ..++-.+++++.++.++..+..++..+.|+
T Consensus 361 legl~~a~~~iD~vI~iIr~s~~~~~a~~~L~~~f~lse~Qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~~iL~ 440 (470)
T 3ilw_A 361 LRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILA 440 (470)
T ss_dssp HHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHHHTCCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 555666678889999888888766665555542 2222223 367888899999999999999999999996
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh
Q 013999 346 PSYTGIDDEDIEEEFKKLEQEVE 368 (432)
Q Consensus 346 ~~~~~~De~ELe~EL~~Le~E~~ 368 (432)
... .=-.-+-+||.++...-.
T Consensus 441 ~~~--~~~~~i~~el~~i~~~yg 461 (470)
T 3ilw_A 441 KPE--RQRGIVRDELAEIVDRHG 461 (470)
T ss_dssp CHH--HHHHHHHHHHHHHHHHHC
T ss_pred CHH--HHHHHHHHHHHHHHHHhC
Confidence 510 012345678887776544
No 36
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=31.46 E-value=2.4e+02 Score=23.97 Aligned_cols=76 Identities=4% Similarity=-0.045 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 013999 219 DYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHA-KQLKLTKESREKCTSLLNRVEEVLSLIE 294 (432)
Q Consensus 219 D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~L-r~KK~~ek~l~~~~~~l~~le~~l~~Ie 294 (432)
+...-.|..++..++.+...|+-+....-...+..-.+..-..+...+ .-+..+++...++..+..+|...+.+++
T Consensus 28 e~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~ 104 (150)
T 4dci_A 28 EEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVR 104 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666555555544333322100000002222222 2234556666666666666655555544
No 37
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=30.42 E-value=1.7e+02 Score=24.09 Aligned_cols=67 Identities=10% Similarity=0.122 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHH
Q 013999 270 KLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKN--KISVEELQLCLEELEESIDL 336 (432)
Q Consensus 270 K~~ek~l~~~~~~l~~le~~l~~Ie~a~~n~~v~~al~~g~~aLk~~--~i~~e~Ve~~~ddi~E~~~~ 336 (432)
.+++..++.....+..|+..+..++....+...++++..+.-.||-. -++...+.++--.+++..+.
T Consensus 4 ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~ 72 (139)
T 2ld6_A 4 EYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDK 72 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 35677788888899999999999998888888999999999999973 55888888877777765543
No 38
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=29.89 E-value=2.9e+02 Score=28.18 Aligned_cols=67 Identities=7% Similarity=0.029 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 013999 221 DVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNK------TVALRHAKQLKLTKESREKCTSLLNRVE 287 (432)
Q Consensus 221 ~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k------~~A~~~Lr~KK~~ek~l~~~~~~l~~le 287 (432)
.|+.|-.....+..+++.|..+...+.+.+.+..++|.. ..+-.++.+.+.+-..+..+...+..++
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~ 143 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLE 143 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777776666554443320 1233344444444444444444444443
No 39
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=28.64 E-value=4.4e+02 Score=28.07 Aligned_cols=88 Identities=18% Similarity=0.266 Sum_probs=56.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHh---cCCChHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013999 279 CTSLLNRVEEVLSLIENAESTKKVSEAIQIG-------AQAIKK---NKISVEELQLCLEELEESIDLQKQAEKVIVPSY 348 (432)
Q Consensus 279 ~~~~l~~le~~l~~Ie~a~~n~~v~~al~~g-------~~aLk~---~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~ 348 (432)
+...+.++.+++..|..+.+..++...|... ++++=. ..++-.+++++.++.++..+..++....|+...
T Consensus 585 l~~a~~~iD~vI~iIr~s~~~~~a~~~L~~~f~lse~Qa~aIL~m~L~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~ 664 (692)
T 2xcs_B 585 LRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEE 664 (692)
T ss_dssp HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHTCCHHHHHHHHTCBGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHhHHHHHHHHHhCCCHHHHHHHHhhccCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 3455667777777777776665555555432 222222 266778899999999999999999999995510
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 013999 349 TGIDDEDIEEEFKKLEQEVE 368 (432)
Q Consensus 349 ~~~De~ELe~EL~~Le~E~~ 368 (432)
.=-.-+-+||.++...-.
T Consensus 665 --~~~~~i~~el~~i~~~yg 682 (692)
T 2xcs_B 665 --VLLQLVRDELTEIRDRFG 682 (692)
T ss_dssp --HHHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHHHHcC
Confidence 001236678887765543
No 40
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=28.30 E-value=2.5e+02 Score=23.12 Aligned_cols=60 Identities=8% Similarity=0.127 Sum_probs=42.2
Q ss_pred chhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 013999 217 SLDYDVLHLIWTVEKLQLQL-----DIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESR 276 (432)
Q Consensus 217 e~D~~I~~Lk~~~~~L~~~i-----~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l 276 (432)
-+|.+.-+|--+-.-++++- ..|..+|..++++||++-+.|.-..---+.|+--+++..|
T Consensus 10 ~~~~~~~~~~~~~~~mekrySeMS~~EL~~EI~~L~EKaRKAEq~Gi~NE~aV~erKi~mAkSYL 74 (128)
T 1sf9_A 10 GVDLGTENLYFQSNAMEKRYSQMTPHELNTEIALLSEKARKAEQHGIINELAVLERKITMAKAYL 74 (128)
T ss_dssp -CCGGGGHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcceeeeecchhhHHHHHcCHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHc
Confidence 35666666666666666665 4899999999999999999998776555555555544443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.26 E-value=4.7e+02 Score=26.48 Aligned_cols=24 Identities=17% Similarity=-0.007 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013999 222 VLHLIWTVEKLQLQLDIIDRHYEM 245 (432)
Q Consensus 222 I~~Lk~~~~~L~~~i~~Le~~i~~ 245 (432)
+-++...+..|+.++...+..+..
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~~l~~ 481 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQLLQG 481 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333333
No 42
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=27.93 E-value=3.5e+02 Score=27.49 Aligned_cols=33 Identities=9% Similarity=0.054 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013999 221 DVLHLIWTVEKLQLQLDIIDRHYEMSRKSALAS 253 (432)
Q Consensus 221 ~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~ 253 (432)
.|+.|-.....+..+.+.|..+...+.+++.+.
T Consensus 38 ~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~ 70 (484)
T 3lss_A 38 AIIEADKKWRRTQFLTEASKKLINICSKAVGAK 70 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666667777777777777666666554433
No 43
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=27.27 E-value=2.9e+02 Score=31.30 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=16.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013999 215 ISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKS 249 (432)
Q Consensus 215 Ite~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ 249 (432)
+.+....+-.++..+..++..+..++.++..+..+
T Consensus 859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e 893 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEE 893 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555544443
No 44
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.20 E-value=3.2e+02 Score=27.39 Aligned_cols=75 Identities=11% Similarity=0.012 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHH-H-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 013999 258 NKTVALRHAKQLKL-T-KESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESID 335 (432)
Q Consensus 258 ~k~~A~~~Lr~KK~-~-ek~l~~~~~~l~~le~~l~~Ie~a~~n~~v~~al~~g~~aLk~~~i~~e~Ve~~~ddi~E~~~ 335 (432)
+.+..+..|++|.. - ...+++....-..-.+++..++..+.....+. .....+|..+ ++.+.++.++.+..+
T Consensus 10 n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~s---k~i~~~~~~~---~~~~~l~~~~~~~~~ 83 (455)
T 2dq0_A 10 NPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIA---VEIGKRRKKG---EPVDELLAKSREIVK 83 (455)
T ss_dssp CHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHTSC---CCTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhccc---ccHHHHHHHHHHHHH
Confidence 34444455555543 1 12244444444444444445554444433221 1112233333 344555555554444
Q ss_pred HHH
Q 013999 336 LQK 338 (432)
Q Consensus 336 ~~~ 338 (432)
...
T Consensus 84 ~~~ 86 (455)
T 2dq0_A 84 RIG 86 (455)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 45
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.00 E-value=3.2e+02 Score=27.82 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 013999 221 DVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVL 290 (432)
Q Consensus 221 ~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l 290 (432)
.|+.|-.....+..+++.|..+...+.+++.++.++|.. |-.++.+.+.+...+..+...+..++.-+
T Consensus 34 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~--~~~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 34 EIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKED--AKDLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777778888888888888877777766555444431 22333344444444444444444444433
No 46
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=26.87 E-value=2.2e+02 Score=24.41 Aligned_cols=47 Identities=11% Similarity=0.229 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHH
Q 013999 237 DIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLL 283 (432)
Q Consensus 237 ~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l 283 (432)
..+..++..+......++..++-..|..++++-|.+.+..+.+....
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~kl~y~~kl~~~i~~~~ 165 (171)
T 1fpo_A 119 KRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAEQLE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666667778888899999999999888877766655443
No 47
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=26.12 E-value=4.9e+02 Score=25.81 Aligned_cols=73 Identities=10% Similarity=0.044 Sum_probs=32.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 013999 217 SLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASL--HSGNKTVAL----RHAKQLKLTKESREKCTSLLNRVEEV 289 (432)
Q Consensus 217 e~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~--~~~~k~~A~----~~Lr~KK~~ek~l~~~~~~l~~le~~ 289 (432)
.+|..|-.|+..++.|.+.-.....-|..++...+..- ..++-+.+- ..|-.+..+|..+.+..+++..|+.+
T Consensus 35 ~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~ 113 (411)
T 3ghg_C 35 KVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEI 113 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45555555555555555444444444444333222111 111222222 23444455555555555555555554
No 48
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=25.97 E-value=1.1e+02 Score=18.42 Aligned_cols=26 Identities=8% Similarity=0.123 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013999 222 VLHLIWTVEKLQLQLDIIDRHYEMSR 247 (432)
Q Consensus 222 I~~Lk~~~~~L~~~i~~Le~~i~~~~ 247 (432)
|..||+.+.-|.+.|..|.-+|..++
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777776666665443
No 49
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=25.49 E-value=2.9e+02 Score=27.38 Aligned_cols=67 Identities=16% Similarity=0.076 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 013999 220 YDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVL 290 (432)
Q Consensus 220 ~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l 290 (432)
..|+.|-.....+..+++.|..+...+.+++.+ +.+..+-..+.+.+.+-..+..+...+..++.-+
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPK----APPEEKEALIARGKALGEEAKRLEEALREKEARL 94 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888888888888888887776665432 3344444444444555555554444444444333
No 50
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.46 E-value=4.9e+02 Score=25.55 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 013999 282 LLNRVEEVLSLIENAE 297 (432)
Q Consensus 282 ~l~~le~~l~~Ie~a~ 297 (432)
...+|+.++.+|..-.
T Consensus 139 Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 139 LQKNVRDQLVDMKRLE 154 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444443333
No 51
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=24.74 E-value=1.6e+02 Score=30.17 Aligned_cols=89 Identities=16% Similarity=0.244 Sum_probs=59.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHh---cCCChHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013999 279 CTSLLNRVEEVLSLIENAESTKKVSEAIQI-------GAQAIKK---NKISVEELQLCLEELEESIDLQKQAEKVIVPSY 348 (432)
Q Consensus 279 ~~~~l~~le~~l~~Ie~a~~n~~v~~al~~-------g~~aLk~---~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~ 348 (432)
+...+.++.+++.-|..+.+..++...|.. -++++=. ..++-.+++++.++.++..+..++....|+...
T Consensus 378 l~~a~~~id~vI~iIr~s~~~~~a~~~L~~~f~lse~qa~~IL~m~L~rLt~~e~~kl~~E~~~l~~~i~~l~~iL~~~~ 457 (496)
T 2nov_A 378 LIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDER 457 (496)
T ss_dssp HHHHHHSHHHHHHHHTTSSSHHHHHSSCCC-CCCCHHHHHHHHTCBGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhhHHHHHHhCCCHHHHHHHHHHhcCCCHHHHHHHHhChHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 344456777777777766655555433321 2333333 377888999999999999999999999996511
Q ss_pred CCCCHHHHHHHHHHHHHHHhh
Q 013999 349 TGIDDEDIEEEFKKLEQEVEC 369 (432)
Q Consensus 349 ~~~De~ELe~EL~~Le~E~~~ 369 (432)
.-.+=+-+||.++...-.+
T Consensus 458 --~~~~~i~~el~~i~~~y~~ 476 (496)
T 2nov_A 458 --TMYNLMKKELREVKKKFAT 476 (496)
T ss_dssp --HHHHHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHHHHHhCC
Confidence 1134577899888776544
No 52
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.69 E-value=2.3e+02 Score=22.29 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013999 224 HLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVS 303 (432)
Q Consensus 224 ~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~~Ie~a~~n~~v~ 303 (432)
.++..+..|+.+....+.++..+.... -.--.+|..+|+...++..-+..|...|. -..|.+|.
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l------------~eE~~~R~~aE~~~~~ie~ElEeLTasLF----eEAN~MVa 72 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDI------------AKENELRTKAEEEADKLNKEVEDLTASLF----DEANNMVA 72 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 455555555555555555554444322 12222334445555555555555544443 35567777
Q ss_pred HH
Q 013999 304 EA 305 (432)
Q Consensus 304 ~a 305 (432)
.|
T Consensus 73 ~a 74 (97)
T 2eqb_B 73 DA 74 (97)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 53
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=24.22 E-value=2.4e+02 Score=24.50 Aligned_cols=44 Identities=7% Similarity=-0.036 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 013999 237 DIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCT 280 (432)
Q Consensus 237 ~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~ 280 (432)
..++.++..+......++..++-..|...+++-+.+.+..+.+-
T Consensus 128 ~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~kl~~~ik 171 (181)
T 3uo3_A 128 KQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFK 171 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777778888889999999999999999988877654
No 54
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=24.11 E-value=3.7e+02 Score=23.70 Aligned_cols=35 Identities=11% Similarity=-0.053 Sum_probs=17.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013999 214 SISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRK 248 (432)
Q Consensus 214 ~Ite~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~ 248 (432)
..+..+-.|..-|.....+..+...++........
T Consensus 4 ~f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqe 38 (189)
T 2v71_A 4 DFSSLKEETAYWKELSMKYKQSFQEARDELVEFQE 38 (189)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556665555555555555544444444333
No 55
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=23.15 E-value=1.4e+02 Score=24.93 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHH
Q 013999 270 KLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKN--KISVEELQLCLEELEESID 335 (432)
Q Consensus 270 K~~ek~l~~~~~~l~~le~~l~~Ie~a~~n~~v~~al~~g~~aLk~~--~i~~e~Ve~~~ddi~E~~~ 335 (432)
.+++..++.....+..|+..+..++....+...++++..+.-.||-. -++...+.++--.+++..+
T Consensus 7 ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~ 74 (146)
T 1i5n_A 7 DFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLD 74 (146)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHH
Confidence 46677888888889999999988888777888999999999999973 4577777666666655443
No 56
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=22.48 E-value=5e+02 Score=24.59 Aligned_cols=68 Identities=19% Similarity=0.149 Sum_probs=46.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHH
Q 013999 273 KESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK-NKISVEELQLCLEELEESIDLQKQA 340 (432)
Q Consensus 273 ek~l~~~~~~l~~le~~l~~Ie~a~~n~~v~~al~~g~~aLk~-~~i~~e~Ve~~~ddi~E~~~~~~EI 340 (432)
....+++.......+++-..|..-....-...++..+..-|+. .|..+++=.++|+.|+..++...+.
T Consensus 13 ~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~Ere~ 81 (302)
T 3ibp_A 13 SNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREA 81 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666777767777777777777777776 4777777788888887777666443
No 57
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.30 E-value=3.8e+02 Score=26.42 Aligned_cols=9 Identities=33% Similarity=0.534 Sum_probs=5.6
Q ss_pred HHHHHHHHH
Q 013999 140 KDKADEVIK 148 (432)
Q Consensus 140 ~~~a~~i~~ 148 (432)
.+.|..|++
T Consensus 287 ~eaA~~Fi~ 295 (471)
T 3mq9_A 287 KELAKEFLE 295 (471)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456667775
No 58
>3t9o_A DGC, diguanylate cyclase YDEH; putative zinc sensor, CZB domain, metal protein; 2.20A {Escherichia coli}
Probab=21.76 E-value=2.1e+02 Score=23.47 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 013999 235 QLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIEN 295 (432)
Q Consensus 235 ~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~~Ie~ 295 (432)
+++..-+++...-.++..++.+|+...|. ...+++.+......++++.+.|.+||.
T Consensus 75 ~l~~~H~~~H~~a~~ii~~~~~g~~~~a~-----~~~~e~as~~~~~~ld~~k~~Ll~l~~ 130 (135)
T 3t9o_A 75 LMDSAHQHMHNCGRELMLAIVENHWQDAH-----FDAFQEGLLSFTAALTDYKIYLLTLEH 130 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHhHHHHHHHHHHHHHHHHHHcCChHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45666777777777778888889877663 346677778888888888888888774
No 59
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.47 E-value=1.3e+02 Score=20.03 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 013999 218 LDYDVLHLIWTVEKLQLQLDIID 240 (432)
Q Consensus 218 ~D~~I~~Lk~~~~~L~~~i~~Le 240 (432)
+|+-|...+..+..|++++..|+
T Consensus 14 VdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 14 VDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 60
>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY, PFAM02637, DUF186, PSI, protein structure initiative; 1.40A {Bacillus subtilis} SCOP: a.182.1.1
Probab=21.40 E-value=3.6e+02 Score=22.52 Aligned_cols=61 Identities=13% Similarity=0.042 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013999 244 EMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTS----LLNRVEEVLSLIENAESTKKVSEAIQ 307 (432)
Q Consensus 244 ~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~----~l~~le~~l~~Ie~a~~n~~v~~al~ 307 (432)
+.++...+.+.+++++. .+..||.=+..-++.+.-.. .=..+-.++..+. ..-+++++.|.
T Consensus 5 ~~l~~dlk~Amkakd~~-r~~~lR~l~aai~~~e~~~~~~~lt~~~l~~li~~~~--K~~ke~~~~~~ 69 (148)
T 1ng6_A 5 ERLNQDMKLYMKNREKD-KLTVVRMVKASLQNEAIKLKKDSLTEDEELTVLSREL--KQRKDSLQEFS 69 (148)
T ss_dssp HHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 34556677778888765 45555554444444433221 2334444444444 23344444443
No 61
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=21.39 E-value=2.8e+02 Score=31.41 Aligned_cols=38 Identities=0% Similarity=-0.085 Sum_probs=27.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013999 216 SSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALAS 253 (432)
Q Consensus 216 te~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~ 253 (432)
+...+.+..++..+..++.++..++..+..+..+...+
T Consensus 853 a~~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~L 890 (1184)
T 1i84_S 853 TRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQL 890 (1184)
T ss_dssp CTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777788888888888888887777766655443
No 62
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=21.10 E-value=3.5e+02 Score=23.97 Aligned_cols=44 Identities=9% Similarity=0.069 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Q 013999 238 IIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTS 281 (432)
Q Consensus 238 ~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~ 281 (432)
.+..+++.+......++..|+-..|...+++-|.+.+..+.+..
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~d~~~A~~~v~kL~y~~kl~~~i~~ 202 (207)
T 3bvo_A 159 IVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKL 202 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666777889999999999999999887766554
No 63
>4hg1_A Putative cytoplasmic protein; PSI-biology, MCSG, midwest center for structural genomics; HET: MLY MSE MLZ PG4; 1.75A {Salmonella enterica subsp} PDB: 4hg1_C* 4hg1_B*
Probab=21.08 E-value=27 Score=30.70 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=16.9
Q ss_pred hhhcCCCCCchhhhhhhccC
Q 013999 10 VLKEVPDWNDEVIATARFKA 29 (432)
Q Consensus 10 i~~~~~~w~d~~Rl~sLysd 29 (432)
+..+-|.|+|+-||++||+=
T Consensus 109 ~EdLmPvWnddP~LPALirI 128 (225)
T 4hg1_A 109 IEDLMPVWSNDPRLPALIRI 128 (225)
T ss_dssp GGGGCCCBCCCTTCBEEEEE
T ss_pred HHHhcccccCCCCCcceEEe
Confidence 45677999999999999974
Done!