BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014000
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 89/410 (21%), Positives = 152/410 (37%), Gaps = 39/410 (9%)
Query: 40 HTIHVIFYYEKSPFGSFDMDPIRVTLSEVLSSYPPVTARLTRDDAGNWAVKCNDAGVRVL 99
HT V FY FD ++ LS L + P+ RL RD+ G ++CN GV +
Sbjct: 37 HTPSVYFYRPTGSSNFFDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFV 96
Query: 100 RARVGITLDEWLRSADGNEERDLT------------------LNDFEGGGVAIGLSCTHM 141
A +D++ A E R L + F+ GGV++G+ H
Sbjct: 97 EAESDGVVDDFGDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHH 156
Query: 142 HGDLTSLILLFKAFSESHHGQAITXXXXXXXXXXXXXXXSVNNSKSTSYLEAKLQKQTPS 201
D S + ++S+ G +T + Y K +P
Sbjct: 157 AADGFSGLHFINSWSDMARGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALKVSPQ 216
Query: 202 VKMSTATFKFSDSVVK---QCLSEIHDKCPD------ASPFDLLAALFWIRVVHLKGPKH 252
S + + + S+ K + +S + K + S +++LA W +G +
Sbjct: 217 TAKSDSVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEV 276
Query: 253 DDHTHSLSLCVDFRRLLQEPLPYGYFGNAXXXXXXXXXXXXMDCSMLGRVAELVHCHVSG 312
D T L + D R L+ LP GYFGN ++ + A +H ++
Sbjct: 277 DQGT-KLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALAR 335
Query: 313 LKEEEFWATLHWLDLQKEEGGKYAPPFAMYGPEFTCVSVEHMIIGDQSVMYSMNFDSAKP 372
+ + + L +L+LQ + P S + I D +F +P
Sbjct: 336 MDNDYLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDA------DFGWGRP 389
Query: 373 VHVSCHVGNAEGEGLILVMPSAEAGLARTVMVTLPEEETAKLCEDQSILH 422
+ + G EGL ++PS + +V ++L + E KL QS L+
Sbjct: 390 IFMGP--GGIAYEGLSFILPSPTNDGSMSVAISL-QGEHMKLF--QSFLY 434
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 88/410 (21%), Positives = 151/410 (36%), Gaps = 39/410 (9%)
Query: 40 HTIHVIFYYEKSPFGSFDMDPIRVTLSEVLSSYPPVTARLTRDDAGNWAVKCNDAGVRVL 99
HT V FY FD ++ LS L + P+ RL RD+ G ++CN GV +
Sbjct: 40 HTPSVYFYRPTGSSNFFDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFV 99
Query: 100 RARVGITLDEWLRSADGNEERDLT------------------LNDFEGGGVAIGLSCTHM 141
A +D++ A E R L + F+ GGV++G+ H
Sbjct: 100 EAESDGVVDDFGDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHH 159
Query: 142 HGDLTSLILLFKAFSESHHGQAITXXXXXXXXXXXXXXXSVNNSKSTSYLEAKLQKQTPS 201
D S + ++S+ G +T + Y +P
Sbjct: 160 AADGFSGLHFINSWSDMARGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQ 219
Query: 202 VKMSTATFKFSDSVVK---QCLSEIHDKCPD------ASPFDLLAALFWIRVVHLKGPKH 252
S + + + S+ K + +S + K + S +++LA W +G +
Sbjct: 220 TAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEV 279
Query: 253 DDHTHSLSLCVDFRRLLQEPLPYGYFGNAXXXXXXXXXXXXMDCSMLGRVAELVHCHVSG 312
D T L + D R L+ LP GYFGN ++ + A +H ++
Sbjct: 280 DQGT-KLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALAR 338
Query: 313 LKEEEFWATLHWLDLQKEEGGKYAPPFAMYGPEFTCVSVEHMIIGDQSVMYSMNFDSAKP 372
+ + + L +L+LQ + P S + I D +F +P
Sbjct: 339 MDNDYLRSALDYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDA------DFGWGRP 392
Query: 373 VHVSCHVGNAEGEGLILVMPSAEAGLARTVMVTLPEEETAKLCEDQSILH 422
+ + G EGL ++PS + +V ++L + E KL QS L+
Sbjct: 393 IFMGP--GGIAYEGLSFILPSPTNDGSMSVAISL-QGEHMKLF--QSFLY 437
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/410 (21%), Positives = 151/410 (36%), Gaps = 39/410 (9%)
Query: 40 HTIHVIFYYEKSPFGSFDMDPIRVTLSEVLSSYPPVTARLTRDDAGNWAVKCNDAGVRVL 99
HT V FY FD ++ LS L + P+ RL RD+ G ++CN GV +
Sbjct: 40 HTPSVYFYRPTGSSNFFDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFV 99
Query: 100 RARVGITLDEWLRSADGNEERDLT------------------LNDFEGGGVAIGLSCTHM 141
A +D++ A E R L + F+ GGV++G+ H
Sbjct: 100 EAESDGVVDDFGDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHH 159
Query: 142 HGDLTSLILLFKAFSESHHGQAITXXXXXXXXXXXXXXXSVNNSKSTSYLEAKLQKQTPS 201
D S + ++S+ G +T + Y +P
Sbjct: 160 AADGFSGLHFINSWSDMARGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQ 219
Query: 202 VKMSTATFKFSDSVVK---QCLSEIHDKCPD------ASPFDLLAALFWIRVVHLKGPKH 252
S + + + S+ K + +S + K + S +++LA W +G +
Sbjct: 220 TAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEV 279
Query: 253 DDHTHSLSLCVDFRRLLQEPLPYGYFGNAXXXXXXXXXXXXMDCSMLGRVAELVHCHVSG 312
D T L + D R L+ LP GYFGN ++ + A +H ++
Sbjct: 280 DQGT-KLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALAR 338
Query: 313 LKEEEFWATLHWLDLQKEEGGKYAPPFAMYGPEFTCVSVEHMIIGDQSVMYSMNFDSAKP 372
+ + + L +L+LQ + P S + I D +F +P
Sbjct: 339 MDNDYLRSALDYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDA------DFGWGRP 392
Query: 373 VHVSCHVGNAEGEGLILVMPSAEAGLARTVMVTLPEEETAKLCEDQSILH 422
+ + G EGL ++PS + +V ++L + E KL QS L+
Sbjct: 393 IFMGP--GGIAYEGLSFILPSPTNDGSMSVAISL-QGEHMKLF--QSFLY 437
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 129/313 (41%), Gaps = 53/313 (16%)
Query: 1 MGDQKSRVNVHSVLTQVSSRPSASDETYPLTRLDHAMGHHTIHVIFYYEKSPFGSFDMDP 60
M Q +V+ +L SS S + Y ++ LD + I I +Y +P S ++DP
Sbjct: 1 MAPQMEKVSEELILP--SSPTPQSLKCYKISHLDQLLLTCHIPFILFY-PNPLDS-NLDP 56
Query: 61 ------IRVTLSEVLSSYPPVTARLTRDDAGNWAVKCNDAGVRVLRARVGI--------- 105
++ +LS+VL+ + P+ R+ N +V CND+GV + ARV
Sbjct: 57 AQTSQHLKQSLSKVLTHFYPLAGRINV----NSSVDCNDSGVPFVEARVQAQLSQAIQNV 112
Query: 106 ----TLDEWLRSA-------DGNEERDLT--LNDFEGGGVAIGLSCTHMHGDLTSLILLF 152
LD++L SA + NE+ L ++ FE GG AIG++ +H D+ SL
Sbjct: 113 VELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFL 172
Query: 153 KAFSESHHGQAITXXXXXXXXXXXXXXXSVNNSKSTSYLEAKLQKQTPSVKMSTATFKFS 212
A++ + G+ T V+N+ S + P + F F
Sbjct: 173 NAWTATCRGE--TEIVLPNFDLAARHFPPVDNTPSPELV--------PDENVVMKRFVFD 222
Query: 213 DSVV----KQCLSEIHDKCPDASPFDLLAALFWIRVVHLKGPKHDDHTHSLSL-CVDFRR 267
+ Q S +K + S L+ A W V+ + K+ + + V+ R
Sbjct: 223 KEKIGALRAQASSASEEK--NFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRS 280
Query: 268 LLQEPLPYGYFGN 280
+ PLP+ GN
Sbjct: 281 RMNPPLPHYAMGN 293
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 19/168 (11%)
Query: 127 FEGGGVAIGLSCTHMHGDLTSLILLFKAFS---------ESHHGQAITXXXXXXXXXXXX 177
F G+AIG++ H GD ++ KA++ ES
Sbjct: 157 FPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPML 216
Query: 178 XXXSVNNSKSTSYLEAKLQKQT--PSVKMSTATFKFSDSVVKQCLSEIHDKCPD---ASP 232
+ +K S+ E + + PS K+ ATF + +V+ Q + + P S
Sbjct: 217 DEAYLKRAKVESFNEDYVTQSLAGPSDKLR-ATFILTRAVINQLKDRVLAQLPTLEYVSS 275
Query: 233 FDLLAALFWIRVVHLKGPKHDDHTHSLSLCVDFRRLLQEPLPYGYFGN 280
F + A W + +D +D R ++ P+P YFGN
Sbjct: 276 FTVACAYIWSCIAK----SRNDKLQLFGFPIDRRARMKPPIPTAYFGN 319
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 19/168 (11%)
Query: 127 FEGGGVAIGLSCTHMHGDLTSLILLFKAFS---------ESHHGQAITXXXXXXXXXXXX 177
F G+AIG++ H GD ++ KA++ ES
Sbjct: 157 FPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPXL 216
Query: 178 XXXSVNNSKSTSYLEAKLQKQT--PSVKMSTATFKFSDSVVKQCLSEIHDKCPD---ASP 232
+ +K S+ E + + PS K+ ATF + +V+ Q + + P S
Sbjct: 217 DEAYLKRAKVESFNEDYVTQSLAGPSDKLR-ATFILTRAVINQLKDRVLAQLPTLEYVSS 275
Query: 233 FDLLAALFWIRVVHLKGPKHDDHTHSLSLCVDFRRLLQEPLPYGYFGN 280
F + A W + +D +D R + P+P YFGN
Sbjct: 276 FTVACAYIWSCIAK----SRNDKLQLFGFPIDRRARXKPPIPTAYFGN 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,332,654
Number of Sequences: 62578
Number of extensions: 475575
Number of successful extensions: 935
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 925
Number of HSP's gapped (non-prelim): 7
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)