Query 014001
Match_columns 432
No_of_seqs 286 out of 1784
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 00:52:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2091 Predicted member of gl 100.0 3.7E-77 8E-82 561.9 25.9 380 11-432 6-392 (392)
2 cd02876 GH18_SI-CLP Stabilin-1 100.0 2.1E-67 4.6E-72 524.0 33.3 312 103-432 1-318 (318)
3 cd02874 GH18_CFLE_spore_hydrol 100.0 1.7E-62 3.7E-67 487.7 34.9 301 105-432 2-313 (313)
4 COG3858 Predicted glycosyl hyd 100.0 5E-60 1.1E-64 465.6 29.8 355 47-432 38-418 (423)
5 cd06549 GH18_trifunctional GH1 100.0 8.4E-60 1.8E-64 465.0 31.5 285 106-429 1-298 (298)
6 cd02875 GH18_chitobiase Chitob 100.0 1.8E-52 4E-57 421.9 32.0 280 103-425 34-340 (358)
7 cd02879 GH18_plant_chitinase_c 100.0 2.2E-51 4.8E-56 405.1 29.9 275 105-427 3-296 (299)
8 cd02872 GH18_chitolectin_chito 100.0 2.6E-51 5.7E-56 415.3 29.9 293 107-426 1-343 (362)
9 smart00636 Glyco_18 Glycosyl h 100.0 2.7E-51 5.9E-56 410.7 29.6 292 106-424 1-334 (334)
10 cd06548 GH18_chitinase The GH1 100.0 6E-49 1.3E-53 392.0 28.1 277 107-424 1-322 (322)
11 cd02873 GH18_IDGF The IDGF's ( 100.0 1.5E-47 3.2E-52 393.1 32.2 298 106-425 1-393 (413)
12 cd02878 GH18_zymocin_alpha Zym 100.0 3.2E-47 6.9E-52 382.7 31.0 287 106-424 1-345 (345)
13 COG3325 ChiA Chitinase [Carboh 100.0 5.8E-46 1.2E-50 367.0 21.6 302 105-424 38-423 (441)
14 KOG2806 Chitinase [Carbohydrat 100.0 4.8E-44 1E-48 368.4 29.4 304 100-426 53-399 (432)
15 PF00704 Glyco_hydro_18: Glyco 100.0 8.2E-45 1.8E-49 363.9 21.9 296 105-424 1-343 (343)
16 cd06545 GH18_3CO4_chitinase Th 100.0 1.1E-42 2.4E-47 335.6 23.8 240 107-431 1-249 (253)
17 cd00598 GH18_chitinase-like Th 100.0 2.7E-31 5.8E-36 248.3 20.2 201 107-424 1-210 (210)
18 cd06546 GH18_CTS3_chitinase GH 99.9 2.1E-21 4.5E-26 187.5 21.3 196 106-339 1-217 (256)
19 cd02871 GH18_chitinase_D-like 99.9 1.1E-20 2.4E-25 187.7 25.9 241 105-365 1-267 (312)
20 cd06544 GH18_narbonin Narbonin 99.9 2E-21 4.3E-26 186.8 18.3 192 120-345 14-222 (253)
21 cd06542 GH18_EndoS-like Endo-b 99.8 4.5E-19 9.7E-24 171.3 19.1 200 106-342 2-208 (255)
22 cd06543 GH18_PF-ChiA-like PF-C 99.7 1.6E-16 3.5E-21 156.0 19.4 152 126-299 23-184 (294)
23 cd02877 GH18_hevamine_XipI_cla 99.6 1.7E-13 3.6E-18 133.9 17.5 149 157-340 63-229 (280)
24 cd06547 GH85_ENGase Endo-beta- 99.0 1.1E-08 2.3E-13 102.7 14.1 160 154-345 47-216 (339)
25 COG3469 Chitinase [Carbohydrat 98.9 3.8E-08 8.1E-13 92.1 12.8 217 105-339 26-266 (332)
26 PF03644 Glyco_hydro_85: Glyco 97.9 2.7E-05 5.8E-10 77.5 7.3 159 154-343 43-209 (311)
27 PF02638 DUF187: Glycosyl hydr 97.8 0.00011 2.4E-09 73.1 10.7 141 184-343 134-300 (311)
28 PF11340 DUF3142: Protein of u 97.8 0.00031 6.8E-09 63.7 11.2 118 185-345 22-141 (181)
29 PF13200 DUF4015: Putative gly 97.7 0.0057 1.2E-07 60.8 19.6 138 156-303 64-236 (316)
30 KOG2331 Predicted glycosylhydr 97.4 0.00057 1.2E-08 68.8 8.1 171 154-369 112-293 (526)
31 PF01476 LysM: LysM domain; I 96.6 0.0022 4.7E-08 44.2 3.0 28 61-92 1-28 (44)
32 PRK14125 cell division suppres 96.3 0.0016 3.4E-08 54.2 1.3 36 57-96 35-78 (103)
33 KOG4701 Chitinase [Cell wall/m 96.3 0.044 9.6E-07 54.8 11.1 174 159-375 96-293 (568)
34 PRK14582 pgaB outer membrane N 95.2 0.21 4.6E-06 54.6 12.3 166 185-369 439-638 (671)
35 cd00118 LysM Lysin domain, fou 94.5 0.052 1.1E-06 36.1 3.5 30 60-93 2-31 (46)
36 TIGR02899 spore_safA spore coa 94.3 0.037 8E-07 37.5 2.5 28 63-94 1-28 (44)
37 smart00257 LysM Lysin motif. 92.8 0.13 2.8E-06 33.7 3.1 30 60-93 1-30 (44)
38 PF14883 GHL13: Hypothetical g 92.2 2.5 5.5E-05 41.4 12.2 160 185-369 117-288 (294)
39 PRK10871 nlpD lipoprotein NlpD 92.1 0.18 3.9E-06 50.2 4.3 36 58-97 60-95 (319)
40 PRK10783 mltD membrane-bound l 91.5 0.19 4.1E-06 52.8 4.0 34 58-95 402-435 (456)
41 TIGR01370 cysRS possible cyste 91.3 2.7 5.8E-05 42.0 11.7 87 155-245 83-203 (315)
42 PF04225 OapA: Opacity-associa 91.0 0.21 4.5E-06 40.0 2.9 52 59-114 3-55 (85)
43 TIGR02907 spore_VI_D stage VI 90.9 0.23 5E-06 49.3 3.7 35 56-94 291-325 (338)
44 COG1306 Uncharacterized conser 87.4 1.6 3.5E-05 42.8 6.5 95 193-299 198-301 (400)
45 PRK06347 autolysin; Reviewed 86.9 0.56 1.2E-05 50.7 3.5 34 58-95 547-580 (592)
46 COG1649 Uncharacterized protei 86.9 1.2 2.7E-05 45.9 5.8 103 186-296 181-309 (418)
47 COG1388 LytE FOG: LysM repeat 86.6 0.73 1.6E-05 39.1 3.4 35 58-96 66-100 (124)
48 PRK14581 hmsF outer membrane N 86.4 6 0.00013 43.6 11.0 165 185-368 439-638 (672)
49 COG4724 Endo-beta-N-acetylgluc 86.4 1.7 3.6E-05 44.1 6.2 105 126-243 107-220 (553)
50 PRK13914 invasion associated s 85.6 0.75 1.6E-05 48.2 3.5 81 58-142 27-127 (481)
51 PRK14706 glycogen branching en 85.1 5.9 0.00013 43.5 10.3 90 156-245 220-348 (639)
52 PRK12568 glycogen branching en 84.3 6.2 0.00014 43.9 10.0 90 156-245 322-452 (730)
53 TIGR02402 trehalose_TreZ malto 83.6 5 0.00011 43.2 8.8 81 156-246 163-269 (542)
54 PRK13914 invasion associated s 83.5 1.2 2.6E-05 46.8 3.9 34 58-95 199-232 (481)
55 PF14871 GHL6: Hypothetical gl 82.5 3.7 8E-05 35.6 6.0 58 154-212 45-132 (132)
56 PRK06347 autolysin; Reviewed 82.2 1.3 2.9E-05 47.9 3.8 33 59-95 480-512 (592)
57 PF13199 Glyco_hydro_66: Glyco 81.3 3.7 7.9E-05 44.3 6.6 61 184-244 238-301 (559)
58 PRK05402 glycogen branching en 80.6 9.5 0.00021 42.6 9.9 89 156-245 318-448 (726)
59 TIGR01515 branching_enzym alph 80.6 8.6 0.00019 42.1 9.4 89 156-245 209-339 (613)
60 TIGR02104 pulA_typeI pullulana 80.6 9.3 0.0002 41.7 9.7 76 156-245 232-339 (605)
61 PRK12313 glycogen branching en 80.2 14 0.0003 40.7 10.9 89 156-245 223-352 (633)
62 PF07364 DUF1485: Protein of u 79.8 16 0.00034 36.2 10.1 148 156-342 48-199 (292)
63 PRK11198 LysM domain/BON super 78.2 2.2 4.8E-05 37.7 3.3 32 57-92 94-128 (147)
64 PLN02960 alpha-amylase 75.6 20 0.00043 40.6 10.4 87 156-245 469-601 (897)
65 PRK10783 mltD membrane-bound l 73.8 3.4 7.4E-05 43.5 3.8 34 58-95 343-376 (456)
66 KOG1552 Predicted alpha/beta h 73.1 4.7 0.0001 38.9 4.2 43 288-335 88-134 (258)
67 PRK14705 glycogen branching en 70.7 33 0.00071 40.6 11.0 89 156-245 818-948 (1224)
68 PF15145 DUF4577: Domain of un 68.2 0.8 1.7E-05 38.0 -1.8 59 32-91 55-113 (128)
69 cd04735 OYE_like_4_FMN Old yel 66.6 67 0.0014 32.5 11.3 100 187-297 141-260 (353)
70 PF02065 Melibiase: Melibiase; 62.2 31 0.00068 35.6 8.0 62 183-244 162-227 (394)
71 PRK03705 glycogen debranching 61.2 28 0.00061 38.5 7.8 57 156-212 245-337 (658)
72 COG2874 FlaH Predicted ATPases 60.9 34 0.00073 32.4 7.1 69 181-264 100-168 (235)
73 TIGR02102 pullulan_Gpos pullul 58.6 40 0.00086 39.5 8.7 57 156-212 558-643 (1111)
74 TIGR02103 pullul_strch alpha-1 57.4 25 0.00054 40.2 6.7 48 184-245 469-516 (898)
75 PLN03244 alpha-amylase; Provis 53.6 97 0.0021 35.0 10.2 57 156-212 444-532 (872)
76 PF14885 GHL15: Hypothetical g 50.8 20 0.00043 28.3 3.3 31 182-212 45-75 (79)
77 cd04747 OYE_like_5_FMN Old yel 48.8 3.1E+02 0.0066 28.0 12.5 24 188-212 142-165 (361)
78 PRK10605 N-ethylmaleimide redu 47.9 2.1E+02 0.0045 29.1 11.2 24 187-211 156-179 (362)
79 TIGR02100 glgX_debranch glycog 47.7 50 0.0011 36.7 7.1 29 184-212 314-342 (688)
80 cd04724 Tryptophan_synthase_al 46.8 75 0.0016 30.3 7.4 67 194-295 94-162 (242)
81 PF08924 DUF1906: Domain of un 46.3 2E+02 0.0042 24.9 9.4 85 154-244 39-127 (136)
82 CHL00200 trpA tryptophan synth 45.3 72 0.0016 31.0 7.0 86 196-319 111-198 (263)
83 TIGR00262 trpA tryptophan synt 44.6 2.3E+02 0.0049 27.3 10.4 66 195-294 106-172 (256)
84 PLN02447 1,4-alpha-glucan-bran 43.5 49 0.0011 37.1 6.2 89 156-245 303-436 (758)
85 PF14307 Glyco_tran_WbsX: Glyc 43.3 25 0.00055 35.5 3.7 25 397-421 55-80 (345)
86 PF14587 Glyco_hydr_30_2: O-Gl 43.2 58 0.0012 33.5 6.1 58 186-245 150-216 (384)
87 cd04734 OYE_like_3_FMN Old yel 42.8 1.3E+02 0.0028 30.3 8.7 95 187-294 138-251 (343)
88 PF00834 Ribul_P_3_epim: Ribul 42.6 52 0.0011 30.6 5.4 93 155-296 45-138 (201)
89 COG2342 Predicted extracellula 42.1 84 0.0018 30.9 6.7 54 192-245 127-183 (300)
90 KOG3111 D-ribulose-5-phosphate 41.6 93 0.002 28.9 6.6 75 180-295 70-144 (224)
91 PRK08091 ribulose-phosphate 3- 41.0 93 0.002 29.6 6.8 76 180-296 74-151 (228)
92 PRK09505 malS alpha-amylase; R 40.2 59 0.0013 36.1 6.2 31 182-212 432-462 (683)
93 PRK08005 epimerase; Validated 39.2 94 0.002 29.2 6.5 94 155-296 46-139 (210)
94 PRK11649 putative peptidase; P 39.1 30 0.00066 36.2 3.5 28 59-90 96-123 (439)
95 PLN02803 beta-amylase 38.3 53 0.0011 35.1 5.1 46 194-241 110-156 (548)
96 TIGR01163 rpe ribulose-phospha 37.8 1.5E+02 0.0033 26.9 7.8 67 196-296 71-137 (210)
97 PF01373 Glyco_hydro_14: Glyco 37.3 51 0.0011 34.0 4.7 48 192-241 17-65 (402)
98 PLN02161 beta-amylase 36.9 57 0.0012 34.7 5.0 47 193-241 119-166 (531)
99 PF05763 DUF835: Protein of un 36.4 82 0.0018 27.4 5.3 68 183-264 54-121 (136)
100 PRK09441 cytoplasmic alpha-amy 36.0 66 0.0014 34.0 5.6 29 184-212 206-234 (479)
101 PRK08883 ribulose-phosphate 3- 36.0 1.1E+02 0.0023 28.9 6.5 95 155-296 45-139 (220)
102 PF00128 Alpha-amylase: Alpha 35.7 92 0.002 29.7 6.2 47 183-244 141-187 (316)
103 PLN00197 beta-amylase; Provisi 35.6 61 0.0013 34.8 5.1 46 194-241 130-176 (573)
104 PLN02705 beta-amylase 35.5 58 0.0013 35.4 4.9 45 195-241 272-317 (681)
105 COG1501 Alpha-glucosidases, fa 35.5 88 0.0019 35.3 6.6 136 108-265 201-345 (772)
106 PRK08745 ribulose-phosphate 3- 35.0 1.1E+02 0.0024 28.9 6.4 96 155-297 49-144 (223)
107 PRK10785 maltodextrin glucosid 34.7 55 0.0012 35.7 4.8 56 184-245 303-363 (598)
108 PF04339 DUF482: Protein of un 33.6 2.3E+02 0.005 29.0 8.8 79 127-212 53-141 (370)
109 PF07582 AP_endonuc_2_N: AP en 33.5 69 0.0015 23.4 3.6 19 194-212 3-22 (55)
110 COG1646 Predicted phosphate-bi 33.2 73 0.0016 30.4 4.7 83 177-296 15-97 (240)
111 PRK13125 trpA tryptophan synth 33.2 1.8E+02 0.0038 27.7 7.6 70 195-295 92-161 (244)
112 COG3170 FimV Tfp pilus assembl 32.9 28 0.00061 38.3 2.1 34 57-90 187-220 (755)
113 cd04733 OYE_like_2_FMN Old yel 32.9 2E+02 0.0044 28.7 8.3 92 188-294 147-258 (338)
114 PRK09613 thiH thiamine biosynt 32.7 3.6E+02 0.0078 28.6 10.3 112 198-339 125-246 (469)
115 PRK13840 sucrose phosphorylase 32.7 99 0.0021 33.0 6.1 55 183-244 166-225 (495)
116 PF06745 KaiC: KaiC; InterPro 32.4 63 0.0014 30.0 4.3 91 188-299 99-190 (226)
117 PLN02801 beta-amylase 32.3 74 0.0016 33.8 5.0 47 193-241 39-86 (517)
118 cd02932 OYE_YqiM_FMN Old yello 32.1 2.4E+02 0.0052 28.1 8.7 65 188-264 152-231 (336)
119 PTZ00334 trans-sialidase; Prov 32.1 11 0.00024 42.0 -1.0 36 6-46 16-51 (780)
120 cd01122 GP4d_helicase GP4d_hel 31.9 2.9E+02 0.0063 26.2 9.0 98 190-296 126-230 (271)
121 PRK11613 folP dihydropteroate 30.8 5.3E+02 0.011 25.4 11.7 24 309-337 163-186 (282)
122 cd00429 RPE Ribulose-5-phospha 30.7 3.1E+02 0.0067 24.7 8.6 67 196-296 72-138 (211)
123 cd02933 OYE_like_FMN Old yello 30.7 4E+02 0.0087 26.7 10.0 24 188-212 150-173 (338)
124 TIGR02456 treS_nterm trehalose 30.5 96 0.0021 33.4 5.8 56 183-245 170-230 (539)
125 PF00659 POLO_box: POLO box du 30.3 2.2E+02 0.0047 21.1 6.2 39 370-410 25-68 (68)
126 PLN02411 12-oxophytodienoate r 30.2 3.6E+02 0.0078 27.8 9.7 23 188-211 163-185 (391)
127 COG0411 LivG ABC-type branched 29.9 85 0.0018 30.2 4.6 46 224-295 181-226 (250)
128 cd02929 TMADH_HD_FMN Trimethyl 29.8 3.1E+02 0.0067 27.9 9.1 24 188-212 148-171 (370)
129 PLN02905 beta-amylase 29.5 84 0.0018 34.3 4.9 46 194-241 289-335 (702)
130 COG5185 HEC1 Protein involved 29.3 49 0.0011 34.6 3.1 56 180-244 97-152 (622)
131 PF10566 Glyco_hydro_97: Glyco 29.3 1.5E+02 0.0032 29.1 6.2 71 156-243 76-147 (273)
132 PRK05581 ribulose-phosphate 3- 29.1 3.2E+02 0.007 25.0 8.5 34 254-296 109-142 (220)
133 PRK11572 copper homeostasis pr 28.9 2.5E+02 0.0054 27.2 7.6 56 154-212 38-94 (248)
134 PLN02877 alpha-amylase/limit d 28.5 1.6E+02 0.0035 34.1 7.2 28 185-212 533-560 (970)
135 COG0296 GlgB 1,4-alpha-glucan 27.1 1.6E+02 0.0035 32.4 6.7 90 156-245 217-347 (628)
136 PF02896 PEP-utilizers_C: PEP- 27.1 1.3E+02 0.0028 29.8 5.5 93 183-296 116-208 (293)
137 TIGR03849 arch_ComA phosphosul 26.4 5.8E+02 0.013 24.4 12.9 169 121-338 17-193 (237)
138 PLN02334 ribulose-phosphate 3- 26.2 3E+02 0.0066 25.7 7.8 69 196-296 80-150 (229)
139 PF04914 DltD_C: DltD C-termin 26.1 1.7E+02 0.0037 25.2 5.5 51 158-210 41-95 (130)
140 cd06589 GH31 The enzymes of gl 26.0 1.4E+02 0.0031 28.7 5.7 48 156-214 69-116 (265)
141 PRK09722 allulose-6-phosphate 25.4 2.5E+02 0.0053 26.8 6.9 93 155-295 47-140 (229)
142 cd02930 DCR_FMN 2,4-dienoyl-Co 25.0 3.7E+02 0.0081 27.0 8.7 64 188-263 135-213 (353)
143 cd06418 GH25_BacA-like BacA is 24.4 5.9E+02 0.013 23.8 11.3 85 153-244 52-139 (212)
144 TIGR02403 trehalose_treC alpha 23.9 1.5E+02 0.0032 32.0 5.7 61 183-244 166-235 (543)
145 cd02803 OYE_like_FMN_family Ol 23.7 4.4E+02 0.0095 25.9 8.8 94 189-297 140-253 (327)
146 COG3410 Uncharacterized conser 23.6 2.1E+02 0.0046 25.9 5.6 47 182-238 143-189 (191)
147 PRK11177 phosphoenolpyruvate-p 22.8 3E+02 0.0065 30.0 7.8 89 190-298 368-458 (575)
148 PRK08255 salicylyl-CoA 5-hydro 21.9 4E+02 0.0087 30.0 8.9 24 188-212 549-572 (765)
149 PLN02591 tryptophan synthase 21.3 7.4E+02 0.016 23.8 10.2 100 194-337 96-196 (250)
150 PF10354 DUF2431: Domain of un 21.2 5.1E+02 0.011 23.2 7.8 109 156-303 43-160 (166)
151 COG0036 Rpe Pentose-5-phosphat 21.1 3.4E+02 0.0074 25.7 6.8 75 180-295 67-141 (220)
152 PF00724 Oxidored_FMN: NADH:fl 21.1 4.9E+02 0.011 26.0 8.6 65 188-264 147-226 (341)
153 PF00809 Pterin_bind: Pterin b 21.0 4.6E+02 0.0099 24.3 7.8 81 155-241 105-194 (210)
154 cd07355 HN_L-delphilin-R2_like 20.9 1.2E+02 0.0026 23.8 3.1 51 181-238 13-63 (80)
155 PF02404 SCF: Stem cell factor 20.8 33 0.00071 33.1 0.0 31 27-57 206-236 (273)
156 PRK14510 putative bifunctional 20.6 3.5E+02 0.0076 32.4 8.3 28 184-212 316-343 (1221)
157 PRK10933 trehalose-6-phosphate 20.4 1.7E+02 0.0037 31.6 5.4 29 183-212 173-201 (551)
158 PRK10260 L,D-transpeptidase; P 20.3 1.3E+02 0.0029 29.9 4.1 36 58-97 40-77 (306)
159 PRK10190 L,D-transpeptidase; P 20.2 1.3E+02 0.0029 30.0 4.1 36 58-97 37-74 (310)
160 TIGR01361 DAHP_synth_Bsub phos 20.1 7.9E+02 0.017 23.7 10.4 87 275-376 98-202 (260)
No 1
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-77 Score=561.91 Aligned_cols=380 Identities=42% Similarity=0.729 Sum_probs=334.5
Q ss_pred CCCCCCchhhhhhhhhhcccCccccccceeEeeeehhhhhhheeeeeeeEeeccCCCChhHHHHhccccCCCCHHHHHHH
Q 014001 11 PSPGRPKNRVESAARLDQFSDSASDRKLITIFVIFFIVIPTVSVLLYCTKYSTRANRSATHMHQRGLVKTDVNYQEILTE 90 (432)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdt~~~i~~r~lv~~~~~~~~il~~ 90 (432)
-+-.|+.+..++.|+..+ .|+++++ +..++++...|. |- .|+++|||.+++..++|+.+
T Consensus 6 ~~v~r~~d~~stv~~~l~----dsd~~l~-----------a~~~~~~k~~f~----D~--~vqd~glv~~dl~akeiv~e 64 (392)
T KOG2091|consen 6 LAVQRLFDHFSTVSMTLN----DSDILLL-----------AFKVVSAKFDFK----DL--KVQDLGLVSPDLIAKEIVLE 64 (392)
T ss_pred HHHHHHHhhcchhHHhhh----hhhHHHH-----------hhHHHHhhcCcc----cc--cHhhcCccCCCchHHHHHHh
Confidence 344455666677777654 4555555 223333343333 32 46799999999999999999
Q ss_pred cCCCCCCCCCCCCCccEEEEEcCCCCCCchhhhhcCCCCcEEEEEEEEeecCCeEEEecCCCCCChHHHHHHHh--CCCc
Q 014001 91 NSKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRK--GDAL 168 (432)
Q Consensus 91 ~~~~~~~~~~~~~~~~vlgY~~~w~~~gy~~~~~~~~~lT~isp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~--~~~k 168 (432)
|+.++...+.++|.+.|+||+||||++||++++++++|||||||+|+++..+|+.+.+.|.||+|++||+++|+ ++++
T Consensus 65 hr~k~se~~~r~f~~~vLayVTPWNs~Gydvakifaskft~iSPVW~ql~~qgs~~~v~G~hdid~gwiralRk~~~~l~ 144 (392)
T KOG2091|consen 65 HRGKLSEEPLRHFGGTVLAYVTPWNSHGYDVAKIFASKFTYISPVWLQLKDQGSDVGVYGKHDIDPGWIRALRKSGKDLH 144 (392)
T ss_pred cccccccCcccccCCceEEEecCcCccchhHHHHHhcccceecchheeehhcCcceEEeecccCChHHHHHHHHhCCCce
Confidence 98888776689999999999999999999999999999999999999999999989999999999999999988 5789
Q ss_pred EEeEEeeccCch----hhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 014001 169 VLPRVVLEAFPK----ELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHS 244 (432)
Q Consensus 169 v~P~v~~~g~~~----~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~ 244 (432)
++||+.++.|++ +++.+++.|++..+.++++|+++||||++||.|+||.++ + .| .....|+++|.++||+
T Consensus 145 ivPR~~fd~~~~~d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~--i---~d-~~al~~v~hl~k~Lhk 218 (392)
T KOG2091|consen 145 IVPRFYFDEFTSADLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADV--I---AD-KDALELVEHLGKALHK 218 (392)
T ss_pred eeceehhhhccchHHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHH--H---hh-hHHHHHHHHHHHHHHH
Confidence 999999999984 899999999999999999999999999999999998754 2 23 3456799999999997
Q ss_pred cccccccccceEEEEEECC-CCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCCCCCCCCCCchhHHHHHHHHhcCCC
Q 014001 245 VNSVRNRKQHLQLVYVIGP-PHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPG 323 (432)
Q Consensus 245 ~~~~~~~k~~~~lsvavpp-~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~aPl~wv~~~l~~~~~~~~ 323 (432)
+.+++++++|| ...++++...++..|++.|.+.+|.|.||||||+.++.||||||++|++.|++++..
T Consensus 219 --------q~l~~iLvvPp~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~~~pg~nap~~wi~~~l~~l~~--- 287 (392)
T KOG2091|consen 219 --------QELQAILVVPPVIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLVQGPGPNAPLEWIRHCLHHLGG--- 287 (392)
T ss_pred --------hheEEEEEeCCCCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccccCCCCCCCHHHHHHHHHHhCC---
Confidence 58999999999 455556666789999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCCeEEEeecccccccccCCCCCCCccCHHHHHHHHHhCCCceEeecCCCceeEEEEcCCCceEEEEeCCHHHHH
Q 014001 324 IGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISIS 403 (432)
Q Consensus 324 ~~~~ip~~KivlGipfYG~~w~~~~~~~~~~i~~~~~~~l~~~~~~~~~wD~~~~~~y~~y~d~~g~~~~V~ydd~~Si~ 403 (432)
....+.||++||+|||+++.... |+++|++.+|+++++.+++...||++++||+|.|++++.++|.|+||++.||+
T Consensus 288 --~s~~r~KiLlGlNFYG~d~~~gd--g~~~IT~~rYL~lLk~~k~~~~~Dees~EH~f~~k~n~~gkhivfyPTL~Sl~ 363 (392)
T KOG2091|consen 288 --SSAKRPKILLGLNFYGNDFNLGD--GGEAITAKRYLQLLKGEKSVFKFDEESKEHFFEYKRNDDGKHIVFYPTLTSLE 363 (392)
T ss_pred --ccccccceeEeeeccccccccCC--CCCceeHHHHHHHHhccCcceeeccccchhheeeeccCCCceEEEecchHhHH
Confidence 34578999999999999998833 78999999999999999999999999999999998766678999999999999
Q ss_pred HHHHHHHHcCCEEEEEEcCCCCchhhhcC
Q 014001 404 MRLEEAKLWGTGIAIWEIGQGLDYFFDLL 432 (432)
Q Consensus 404 ~K~~la~~~glGi~iW~Lg~d~d~f~dll 432 (432)
.|+++|+++|+||+||++||++|||+|||
T Consensus 364 ~Ri~lA~~~gvgISIWe~GqGLDYF~dLl 392 (392)
T KOG2091|consen 364 LRIELARELGVGISIWEYGQGLDYFTDLL 392 (392)
T ss_pred HHHHHHHHhCCceEeeeccCchhhHhhcC
Confidence 99999999999999999999999999997
No 2
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=2.1e-67 Score=523.97 Aligned_cols=312 Identities=51% Similarity=0.953 Sum_probs=275.8
Q ss_pred CCccEEEEEcCCCCCCchhhhhcCCCCcEEEEEEEEeecCCeEEEecCCCCCChHHHHHHHh--CCCcEEeEEeeccCc-
Q 014001 103 YTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRK--GDALVLPRVVLEAFP- 179 (432)
Q Consensus 103 ~~~~vlgY~~~w~~~gy~~~~~~~~~lT~isp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~--~~~kv~P~v~~~g~~- 179 (432)
|+++++||+++|+..+|.+.+++.++||||+|+|+.++++|+...+.|.++.+..++..+|+ +++||+|+|+++||+
T Consensus 1 ~~~~~~~y~~~W~~~~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~~~~~~~~~~~~lk~~~~~lkvlp~i~~gg~~~ 80 (318)
T cd02876 1 FQGPVLGYVTPWNSHGYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEGTHDIDKGWIEEVRKANKNIKILPRVLFEGWSY 80 (318)
T ss_pred CCCceEEEEcCcCccchHHHHHHhccCCEecceEEEEecCCCeeeeecCcchhhHHHHHHHhhCCCcEEEeEEEECCCCH
Confidence 45789999999999999999999999999999999999999877777777777788888877 579999999999997
Q ss_pred ---hhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceE
Q 014001 180 ---KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQ 256 (432)
Q Consensus 180 ---~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~ 256 (432)
+.++++++.|++||++++++|++|||||||||+|+++. .+. .++++++|+.||++||++|++ .++.
T Consensus 81 ~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~-~~~--~~~d~~~~~~~l~el~~~l~~--------~~~~ 149 (318)
T cd02876 81 QDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLA-AYG--VPDKRKELIQLVIHLGETLHS--------ANLK 149 (318)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhc-ccC--CHHHHHHHHHHHHHHHHHHhh--------cCCE
Confidence 47999999999999999999999999999999554332 122 378999999999999999997 3688
Q ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCCCCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCeEEEe
Q 014001 257 LVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLG 336 (432)
Q Consensus 257 lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~aPl~wv~~~l~~~~~~~~~~~~ip~~KivlG 336 (432)
+++++||+........++..+|+++|+++||+|+|||||||+++.|||+||++|++.+++++++. .++|++||+||
T Consensus 150 l~~~v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~~g~~apl~~v~~~v~~~~~~----~~vp~~KlvlG 225 (318)
T cd02876 150 LILVIPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSPQRPGPNAPLSWVRSCLELLLPE----SGKKRAKILLG 225 (318)
T ss_pred EEEEEcCccccccccccccccCHHHHHhhccEEEEEeeccCCCCCCCCCCCcHHHHHHHHHHHhc----CCCCHHHeEEe
Confidence 99999986533222345678999999999999999999999877899999999999999999962 13999999999
Q ss_pred ecccccccccCCCCCCCccCHHHHHHHHHhCCCceEeecCCCceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCCEE
Q 014001 337 INFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGTGI 416 (432)
Q Consensus 337 ipfYG~~w~~~~~~~~~~i~~~~~~~l~~~~~~~~~wD~~~~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~la~~~glGi 416 (432)
||||||+|++.. .++++++.+|++++++.+.+..||+++++++|.|.++ +..|+|||||++|++.|+++|+++|+|+
T Consensus 226 ip~YG~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~y~~~-~~~~~v~ydd~~Si~~K~~~a~~~~lGv 302 (318)
T cd02876 226 LNFYGNDYTLPG--GGGAITGSEYLKLLKSNKPKLQWDEKSAEHFFEYKNK-GGKHAVFYPTLKSIQLRLDLAKELGTGI 302 (318)
T ss_pred ccccccccccCC--CCceeehHHHHHHHHhcCCCceeccCCCcceEEEecC-CCcEEEEeCCHHHHHHHHHHHHHcCCcE
Confidence 999999999865 4667888999999999999999999999999999654 5679999999999999999999999999
Q ss_pred EEEEcCCCCchhhhcC
Q 014001 417 AIWEIGQGLDYFFDLL 432 (432)
Q Consensus 417 ~iW~Lg~d~d~f~dll 432 (432)
++|+||||+++||++|
T Consensus 303 ~~W~lg~~~~~f~~~~ 318 (318)
T cd02876 303 SIWELGQGLDYFYDLL 318 (318)
T ss_pred EEEcccCCchHHhhcC
Confidence 9999999999999987
No 3
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=1.7e-62 Score=487.73 Aligned_cols=301 Identities=28% Similarity=0.477 Sum_probs=266.4
Q ss_pred ccEEEEEcCCCCCCchhhhhcCCCCcEEEEEEEEeecCCeEEEecCCCCCChHHHHHHHhCCCcEEeEEeecc---Cc--
Q 014001 105 YPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRKGDALVLPRVVLEA---FP-- 179 (432)
Q Consensus 105 ~~vlgY~~~w~~~gy~~~~~~~~~lT~isp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~~~~kv~P~v~~~g---~~-- 179 (432)
.+|+||+++|++.+|+.++.+.++||||+|+||+++++|.+ .+. .++.+++.+|++++|++|+|...+ ++
T Consensus 2 ~~~~g~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g~~---~~~--~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~ 76 (313)
T cd02874 2 IEVLGYYTPRNGSDYESLRANAPYLTYIAPFWYGVDADGTL---TGL--PDERLIEAAKRRGVKPLLVITNLTNGNFDSE 76 (313)
T ss_pred ceEEEEEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCCCC---CCC--CCHHHHHHHHHCCCeEEEEEecCCCCCCCHH
Confidence 36999999999999999999999999999999999999873 343 457888888888999998774322 33
Q ss_pred --hhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEE
Q 014001 180 --KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQL 257 (432)
Q Consensus 180 --~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~l 257 (432)
+.++++++.|++||++|++++++|||||||||| |.+ .++++++|+.||++||++|++ +++.|
T Consensus 77 ~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDw-------E~~-~~~d~~~~~~fl~~lr~~l~~--------~~~~l 140 (313)
T cd02874 77 LAHAVLSNPEARQRLINNILALAKKYGYDGVNIDF-------ENV-PPEDREAYTQFLRELSDRLHP--------AGYTL 140 (313)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEec-------ccC-CHHHHHHHHHHHHHHHHHhhh--------cCcEE
Confidence 478999999999999999999999999999996 443 578999999999999999996 37889
Q ss_pred EEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCC-CCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCeEEEe
Q 014001 258 VYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP-HNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLG 336 (432)
Q Consensus 258 svavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~-~~pgp~aPl~wv~~~l~~~~~~~~~~~~ip~~KivlG 336 (432)
+++++|.........+...+|+++|+++||+|+|||||+|++ +.|||+||+.|++.++++++ +++|++||+||
T Consensus 141 sv~~~p~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~~~~gp~a~~~~~~~~~~~~~------~gvp~~KlvlG 214 (313)
T cd02874 141 STAVVPKTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRGGPPGPVAPIGWVERVLQYAV------TQIPREKILLG 214 (313)
T ss_pred EEEecCccccccccccccccCHHHHHhhCCEEEEEEeccCCCCCCCCccCChHHHHHHHHHHH------hcCCHHHEEEe
Confidence 999988644332234567899999999999999999999987 58999999999999999998 68999999999
Q ss_pred ecccccccccCC--CCCCCccCHHHHHHHHHhCCCceEeecCCCceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 014001 337 INFYGNDFVLSE--ASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGT 414 (432)
Q Consensus 337 ipfYG~~w~~~~--~~~~~~i~~~~~~~l~~~~~~~~~wD~~~~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~la~~~gl 414 (432)
||||||+|++.. ++.++.+++.++++++++++..+.||+.+++||+.|.+.+|..|+|||||++|++.|+++++++||
T Consensus 215 ip~YG~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~y~~~~g~~~~v~y~d~~Si~~K~~~~~~~~l 294 (313)
T cd02874 215 IPLYGYDWTLPYKKGGKASTISPQQAINLAKRYGAEIQYDEEAQSPFFRYVDEQGRRHEVWFEDARSLQAKFELAKEYGL 294 (313)
T ss_pred ecccccccccCCCCCcCccccCHHHHHHHHHHcCCCeEECcccCCCcEEEEeCCCCEEEEEeCcHHHHHHHHHHHHHcCC
Confidence 999999998863 234567889999999999999999999999999999877788999999999999999999999999
Q ss_pred -EEEEEEcCCCCchhhhcC
Q 014001 415 -GIAIWEIGQGLDYFFDLL 432 (432)
Q Consensus 415 -Gi~iW~Lg~d~d~f~dll 432 (432)
|+++|+||+||+.+|++|
T Consensus 295 gGv~iW~lg~dD~~~w~~~ 313 (313)
T cd02874 295 RGVSYWRLGLEDPQNWLLL 313 (313)
T ss_pred CeEEEEECCCCCccccccC
Confidence 999999999999999987
No 4
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=100.00 E-value=5e-60 Score=465.57 Aligned_cols=355 Identities=21% Similarity=0.326 Sum_probs=309.5
Q ss_pred hhhhhheeeeeeeEeeccCCCChhHHHHhccccCCCCHHHHHHHcCCCCCC----------CCCCCCCccEEEEEcCCCC
Q 014001 47 IVIPTVSVLLYCTKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKVSEN----------ASHRYYTYPVLAYITPWNS 116 (432)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~gdt~~~i~~r~lv~~~~~~~~il~~~~~~~~~----------~~~~~~~~~vlgY~~~w~~ 116 (432)
++.+++.|..-+..|.+++|||++||+.+ .+++.+++...+..-|+. |+++..+++|.+|+++-.+
T Consensus 38 ~~~q~~~v~~~~~~y~~~~~d~~~Sia~~----~~vt~~~~~~m~~~~~~~~l~~~~~l~~P~~~~~~~~t~~~~~~~~~ 113 (423)
T COG3858 38 VDGQTFVVPPSGHFYDVGPGDTLTSIART----VGVTQDSAAIMNFVICPGYLQYGLNLYIPSARKTDGETTAYYAPRPP 113 (423)
T ss_pred cCceeEEECCcceEEEecCCcchhhhhhh----hcCCHHHHHhhcccccccceeeeeEEeccCCCCCcceeEEEecCCCc
Confidence 56666777777788999999999999999 999999999998666633 3455558999999998765
Q ss_pred -C-CchhhhhcCCCCcEEEEEEEEeecCCeEEEecCCCCCChHHHHHHHhCCCcEEeEEeecc-----Cc----hhhcCC
Q 014001 117 -K-GYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRKGDALVLPRVVLEA-----FP----KELLRK 185 (432)
Q Consensus 117 -~-gy~~~~~~~~~lT~isp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~~~~kv~P~v~~~g-----~~----~~~l~~ 185 (432)
. +..+.....+.+|.++.|.++.++.|.+.. ..+...+...++.+++.+|-++..+ ++ +.+|.+
T Consensus 114 ~~~~~~~~~~~~p~~t~~~~F~~~~~~~g~l~~-----~p~~~~~~~~~~~~i~~~~~iSN~~~~~~~f~~ela~~lL~n 188 (423)
T COG3858 114 TETGELVRRHAGPYLTYVDLFSYHAQENGNLTE-----TPNENVIEIAQCRKIKPVPGISNGTRPGANFGGELAQLLLNN 188 (423)
T ss_pred hhhhhhhhccCCcceeeeccchhcccccccccc-----CCCcchhhhhhhcccceeEEEecCCccccccchHHHHHHHhc
Confidence 2 222345566789999999999988888653 2455666666656777777666544 22 578999
Q ss_pred HHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEECCCC
Q 014001 186 KKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPH 265 (432)
Q Consensus 186 ~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~ 265 (432)
+..++++|+++++.++.+||.|++|| ||.+ .+.||+.|+.|++++|++||+ .|+.+++|+||++
T Consensus 189 et~~~~~i~~ii~~l~~~Gyrgv~iD-------fE~v-~~~DR~~yt~flR~~r~~l~~--------~G~~~siAvaakt 252 (423)
T COG3858 189 ETAKNRLINNIITLLDARGYRGVNID-------FENV-GPGDRELYTDFLRQVRDALHS--------GGYTVSIAVAAKT 252 (423)
T ss_pred HHHHHHHHHHHHHHHHhcCcccEEec-------hhhC-CHHHHHHHHHHHHHHHHHhcc--------CCeEEEEEecCCC
Confidence 99999999999999999999999999 5775 899999999999999999998 5899999999998
Q ss_pred CCCCCCCCCCCCCHHHHhccccEEEEeeccCCCC-CCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCeEEEeeccccccc
Q 014001 266 SEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP-HNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDF 344 (432)
Q Consensus 266 ~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~-~~pgp~aPl~wv~~~l~~~~~~~~~~~~ip~~KivlGipfYG~~w 344 (432)
+..+.+.|.++||+..+++++|++.|||||+|++ +.|||+||+.||+..++|++ +.+|++||+||+|+|||||
T Consensus 253 ~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~gG~PG~vA~i~~vr~~ieya~------T~iP~~Kv~mGip~YGYDW 326 (423)
T COG3858 253 SDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSGGPPGPVASIGWVRKVIEYAL------TVIPAEKVMMGIPLYGYDW 326 (423)
T ss_pred CCCcCccccchhhhhhhceeeeEEEEEEeccCcCCCCCCcccCchhHhhhhhhhh------eecchHHeEEccccccccc
Confidence 7777778999999999999999999999999988 59999999999999999999 6899999999999999999
Q ss_pred ccCCCC---CCCccCHHHHHHHHHhCCCceEeecCCCceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCC-EEEEEE
Q 014001 345 VLSEAS---GGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGT-GIAIWE 420 (432)
Q Consensus 345 ~~~~~~---~~~~i~~~~~~~l~~~~~~~~~wD~~~~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~la~~~gl-Gi~iW~ 420 (432)
..+... ...++++.+.++++.+++++++||..+++|+|.|.|.+|.+|+|||||++|++.|+++++++|| ||++|.
T Consensus 327 ~~~y~~~g~~~~a~~~~~~i~ia~~y~A~Iq~D~~~qsp~F~y~D~eg~~h~VWfeD~~s~~~k~~lik~ygl~GVs~W~ 406 (423)
T COG3858 327 TLPYDPLGYLARAISPDEAIDIANRYNATIQYDATSQSPFFYYVDKEGRYHEVWFEDARSFQTKLDLIKEYGLRGVSYWV 406 (423)
T ss_pred cCCCCCCcceeeecCcchhhhhhcccCCccCcCccccCceEEEEcCCCceEEEEcCchHHHHHHHHHHHHcCCceEEEEE
Confidence 998754 2355888889999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cCCCCchhhhcC
Q 014001 421 IGQGLDYFFDLL 432 (432)
Q Consensus 421 Lg~d~d~f~dll 432 (432)
||++++.+|..|
T Consensus 407 Lg~e~p~~w~~l 418 (423)
T COG3858 407 LGQEDPRNWTYL 418 (423)
T ss_pred ecCcchhHHhhc
Confidence 999999999875
No 5
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=8.4e-60 Score=464.99 Aligned_cols=285 Identities=24% Similarity=0.401 Sum_probs=246.4
Q ss_pred cEEEEEcCCCCCCchhhhhcCCCCcEEEEEEEEee-cCCeEEEecCCCCCChHHH---HHHHhCCCcEEeEEe-e--ccC
Q 014001 106 PVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLK-SQGTSLILEGRHNADAGWL---LELRKGDALVLPRVV-L--EAF 178 (432)
Q Consensus 106 ~vlgY~~~w~~~gy~~~~~~~~~lT~isp~w~~i~-~~g~~~~~~g~~d~d~~~l---~~~~~~~~kv~P~v~-~--~g~ 178 (432)
.++|||++|++.+++.++.+.++||||+|+||+++ .+|.+. . +.|++.+ ..+| .+.+++|+|. + ++|
T Consensus 1 ~~l~~~~~w~~~s~~sl~~~~~~l~~vsP~W~~~~~~~g~l~-~----~~d~~~~~~~~~~k-~~~~~l~~~~~~~~~~~ 74 (298)
T cd06549 1 IALAFYTPWDDASFASLKRHAPRLDWLVPEWLNLTGPEGRID-V----FVDPQGVAIIAAAK-AHPKVLPLVQNISGGAW 74 (298)
T ss_pred CeeEEEecCChhhHHHHHHhhccCCEEeceeEEEecCCCcee-c----cCChHHHHHHHHHH-cCCceeEEEEecCCCCC
Confidence 47999999999999999999999999999999998 456542 2 2344433 3334 4556777654 2 334
Q ss_pred c----hhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccc
Q 014001 179 P----KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQH 254 (432)
Q Consensus 179 ~----~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~ 254 (432)
+ +.++++++.|++||++|+++|++|||||||||| |.+ .++++++|+.||++|+++|++ .+
T Consensus 75 ~~~~~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~-------E~~-~~~d~~~~~~fl~eL~~~l~~--------~~ 138 (298)
T cd06549 75 DGKNIARLLADPSARAKFIANIAAYLERNQADGIVLDF-------EEL-PADDLPKYVAFLSELRRRLPA--------QG 138 (298)
T ss_pred CHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEec-------CCC-ChhHHHHHHHHHHHHHHHhhh--------cC
Confidence 4 579999999999999999999999999999996 443 688999999999999999997 37
Q ss_pred eEEEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCC-CCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCeE
Q 014001 255 LQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP-HNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKI 333 (432)
Q Consensus 255 ~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~-~~pgp~aPl~wv~~~l~~~~~~~~~~~~ip~~Ki 333 (432)
+.|++++|+.. ..+|+++|+++||+|+|||||+|++ +.|||+||+.|++.+++++. .++|++||
T Consensus 139 ~~lsv~v~~~~---------~~~d~~~l~~~~D~v~lMtYD~~~~~~~~gp~a~~~~~~~~~~~~~------~~vp~~Kl 203 (298)
T cd06549 139 KQLTVTVPADE---------ADWNLKALARNADKLILMAYDEHYQGGAPGPIASQDWFESNLAQAV------KKLPPEKL 203 (298)
T ss_pred cEEEEEecCCC---------CCCCHHHHHHhCCEEEEEEeccCCCCCCCCCCCChhhHHHHHHHHH------hCCCHHHE
Confidence 89999998752 2479999999999999999999987 58999999999999999987 68999999
Q ss_pred EEeecccccccccCCCCCCCccCHHHHHHHHHhCCCceEeecCCCceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 014001 334 FLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWG 413 (432)
Q Consensus 334 vlGipfYG~~w~~~~~~~~~~i~~~~~~~l~~~~~~~~~wD~~~~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~la~~~g 413 (432)
+||||||||+|++.. .+..++..++.+++.+++..+.||+++..|+|.|.+++|.+|+|||||++|++.|+++|+++|
T Consensus 204 vlGip~YG~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~h~Vw~~d~~Sl~~K~~~a~~~~ 281 (298)
T cd06549 204 IVALGSYGYDWTKGG--NTKAISSEAAWLLAAHASAAVKFDDKASNATYFFYDDEGVSHEVWMLDAVTLFNQLKAVQRLG 281 (298)
T ss_pred EEEecccCccccCCC--CCcccCHHHHHHHHHHcCCcceecccccCCceEEEcCCCcEEEEEeccHHHHHHHHHHHHHcC
Confidence 999999999998764 456788888888888888889999888888777777788899999999999999999999999
Q ss_pred C-EEEEEEcCCCCchhh
Q 014001 414 T-GIAIWEIGQGLDYFF 429 (432)
Q Consensus 414 l-Gi~iW~Lg~d~d~f~ 429 (432)
| |+++|+||+|++.+|
T Consensus 282 l~Gva~W~lg~ed~~~W 298 (298)
T cd06549 282 PAGVALWRLGSEDPGLW 298 (298)
T ss_pred CCcEEEEeccCCCCCCC
Confidence 9 999999999999998
No 6
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=1.8e-52 Score=421.92 Aligned_cols=280 Identities=20% Similarity=0.250 Sum_probs=231.4
Q ss_pred CCccEEEEEcCCCCCCchhhhhcCCCCcEEEEEEEEeecCCeEEEecCCCCCChHHHHHHHhCCCcEEeEEeeccCchhh
Q 014001 103 YTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRKGDALVLPRVVLEAFPKEL 182 (432)
Q Consensus 103 ~~~~vlgY~~~w~~~gy~~~~~~~~~lT~isp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~~~~kv~P~v~~~g~~~~~ 182 (432)
..++|+||...- . ......++++|+|..+ | +++++.+..+|++|+||++. ++++..+
T Consensus 34 ~~~~~~~~~~~~--~--~~~~~~~~~~tti~~~--------------~--~~~~~~~~~A~~~~v~v~~~---~~~~~~~ 90 (358)
T cd02875 34 PRFEFLVFSVNS--T--NYPNYDWSKVTTIAIF--------------G--DIDDELLCYAHSKGVRLVLK---GDVPLEQ 90 (358)
T ss_pred CceEEEEEEeCC--C--cCcccccccceEEEec--------------C--CCCHHHHHHHHHcCCEEEEE---CccCHHH
Confidence 347999998642 2 2234567899999976 1 25788999999999999953 4556678
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEEC
Q 014001 183 LRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIG 262 (432)
Q Consensus 183 l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavp 262 (432)
+++++.|++||+++++++++|||||||||||. +....++++++|+.||++||++|++.+ .+++|++++|
T Consensus 91 l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~-----p~~~~~~d~~~~t~llkelr~~l~~~~------~~~~Lsvav~ 159 (358)
T cd02875 91 ISNPTYRTQWIQQKVELAKSQFMDGINIDIEQ-----PITKGSPEYYALTELVKETTKAFKKEN------PGYQISFDVA 159 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeEEEcccC-----CCCCCcchHHHHHHHHHHHHHHHhhcC------CCcEEEEEEe
Confidence 99999999999999999999999999999763 322246789999999999999999742 4788999988
Q ss_pred CCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCC-C----CCCCCCCchhHHHHHHHHhcCCCCCCCCCCCeEEEee
Q 014001 263 PPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP-H----NPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGI 337 (432)
Q Consensus 263 p~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~-~----~pgp~aPl~wv~~~l~~~~~~~~~~~~ip~~KivlGi 337 (432)
.... ......||+++|+++||+|+|||||+|++ . .|||+||+.|++.++++++. .++|++||+|||
T Consensus 160 ~~p~----~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~~v~~~v~~~~~-----~gvp~~KLvLGi 230 (358)
T cd02875 160 WSPS----CIDKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYSQTLSGYNNFTK-----LGIDPKKLVMGL 230 (358)
T ss_pred cCcc----cccccccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCchhHHHHHHHHHH-----cCCCHHHeEEEe
Confidence 5311 11233599999999999999999999974 2 58999999999999999886 689999999999
Q ss_pred cccccccccCCCC---------------------CCCccCHHHHHHHHHhCCCceEeecCCCceeEEEEcCCCceEEEEe
Q 014001 338 NFYGNDFVLSEAS---------------------GGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFY 396 (432)
Q Consensus 338 pfYG~~w~~~~~~---------------------~~~~i~~~~~~~l~~~~~~~~~wD~~~~~~y~~y~d~~g~~~~V~y 396 (432)
|||||+|++..+. .++.+++.+++++++..+....||+++++||+.|.|.+|..|+|||
T Consensus 231 p~YGr~w~~~~~~~~~~~~~~~~~p~~g~~~~~~~g~~i~Y~ei~~~~~~~~~~~~wD~~~~~py~~y~d~~g~~~~V~y 310 (358)
T cd02875 231 PWYGYDYPCLNGNLEDVVCTIPKVPFRGANCSDAAGRQIPYSEIMKQINSSIGGRLWDSEQKSPFYNYKDKQGNLHQVWY 310 (358)
T ss_pred CCCCCceeCCCCcccCcccCCCCCCcCCCCCcCCCCCccCHHHHHHHHhcCCCceeeccccccceEEEecCCCcEEEEEe
Confidence 9999999753210 1235677787777777777899999999999999887788899999
Q ss_pred CCHHHHHHHHHHHHHcCC-EEEEEEcCCCC
Q 014001 397 PSLISISMRLEEAKLWGT-GIAIWEIGQGL 425 (432)
Q Consensus 397 dd~~Si~~K~~la~~~gl-Gi~iW~Lg~d~ 425 (432)
||++||+.|++||+++|| |+++|+|++||
T Consensus 311 dD~~Si~~K~~~a~~~gL~Gv~iW~ld~dD 340 (358)
T cd02875 311 DNPQSLSIKVAYAKNLGLKGIGMWNGDLLD 340 (358)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 999999999999999999 99999999976
No 7
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=2.2e-51 Score=405.11 Aligned_cols=275 Identities=16% Similarity=0.284 Sum_probs=224.0
Q ss_pred ccEEEEEcCCCCCCchhhhhcCCCCcEEEEEEEEeecCCeEEEecCCCCC-ChHHHHHHHh--CCCcEEeEEeeccCc--
Q 014001 105 YPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNA-DAGWLLELRK--GDALVLPRVVLEAFP-- 179 (432)
Q Consensus 105 ~~vlgY~~~w~~~gy~~~~~~~~~lT~isp~w~~i~~~g~~~~~~g~~d~-d~~~l~~~~~--~~~kv~P~v~~~g~~-- 179 (432)
..+.||++.|. ..|.+.+++.++||||.+.|+.++++|..+...+.++. ...+...+|+ +++|++ +++|||+
T Consensus 3 ~~~~~Y~~~w~-~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~lkvl--isiGG~~~~ 79 (299)
T cd02879 3 IVKGGYWPAWS-EEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPSDESEFSTFTETVKRKNPSVKTL--LSIGGGGSD 79 (299)
T ss_pred eEEEEEECCCC-CCCChhHCCcccCCEEEEEEEEecCCCCEEeeccccHHHHHHHHHHHHHhCCCCeEE--EEEeCCCCC
Confidence 57899999998 77899999999999999999999998755444332211 1345555665 567776 8889985
Q ss_pred ----hhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccce
Q 014001 180 ----KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHL 255 (432)
Q Consensus 180 ----~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~ 255 (432)
+.++++++.|++||+++++++++||||||||||| |+ ..++|+++|+.||++||++|++..++ .++.++
T Consensus 80 s~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE-----~P--~~~~d~~n~~~ll~elr~~l~~~~~~-~~~~~~ 151 (299)
T cd02879 80 SSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWE-----FP--SSQVEMENFGKLLEEWRAAVKDEARS-SGRPPL 151 (299)
T ss_pred CchhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeeccc-----CC--CChhHHHHHHHHHHHHHHHHHHHhhc-cCCCcE
Confidence 4689999999999999999999999999999974 33 35789999999999999999864322 223579
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCCC---CCCCCCCchh------HHHHHHHHhcCCCCCC
Q 014001 256 QLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPH---NPGPNAPLKW------ISFTLQLLLGSPGIGT 326 (432)
Q Consensus 256 ~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~---~pgp~aPl~w------v~~~l~~~~~~~~~~~ 326 (432)
+|++++|+... .........+|+++|+++||+|+|||||||+++ .+||+||+++ ++.+|++++. .
T Consensus 152 ~ls~av~~~~~-~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~~~~~~~~v~~~~~-----~ 225 (299)
T cd02879 152 LLTAAVYFSPI-LFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSNVSTDYGIKSWIK-----A 225 (299)
T ss_pred EEEeecccchh-hccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCCCCCHHHHHHHHHH-----c
Confidence 99999986421 000113457899999999999999999999873 4789999864 6788888886 6
Q ss_pred CCCCCeEEEeecccccccccCCCCCCCccCHHHHHHHHHhCCCceEeecCCCceeEEEEcCCCceEEEEeCCHHHHHHHH
Q 014001 327 RSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRL 406 (432)
Q Consensus 327 ~ip~~KivlGipfYG~~w~~~~~~~~~~i~~~~~~~l~~~~~~~~~wD~~~~~~y~~y~d~~g~~~~V~ydd~~Si~~K~ 406 (432)
|+|++||+||||||||+|++ ||++++++|. |. + .+||+|||++|++.|+
T Consensus 226 g~p~~KlvlGvp~YGr~~~~--------------------------~D~~~~~~y~-~~---~-~~wi~ydd~~Si~~K~ 274 (299)
T cd02879 226 GVPAKKLVLGLPLYGRAWTL--------------------------YDTTTVSSYV-YA---G-TTWIGYDDVQSIAVKV 274 (299)
T ss_pred CCCHHHEEEEeccccccccc--------------------------cCCCcceEEE-EE---C-CEEEEeCCHHHHHHHH
Confidence 89999999999999999974 8988888874 53 2 3799999999999999
Q ss_pred HHHHHcCC-EEEEEEcCCCCch
Q 014001 407 EEAKLWGT-GIAIWEIGQGLDY 427 (432)
Q Consensus 407 ~la~~~gl-Gi~iW~Lg~d~d~ 427 (432)
+||+++|| |+++|+||+|+..
T Consensus 275 ~~a~~~~lgGv~~W~l~~Dd~~ 296 (299)
T cd02879 275 KYAKQKGLLGYFAWAVGYDDNN 296 (299)
T ss_pred HHHHhCCCCeEEEEEeecCCcc
Confidence 99999999 9999999999864
No 8
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=2.6e-51 Score=415.32 Aligned_cols=293 Identities=22% Similarity=0.345 Sum_probs=239.0
Q ss_pred EEEEEcCCCC-----CCchhhhhcCCCCcEEEEEEEEeecCCeEEEecCCCCCChHHHHHH---Hh--CCCcEEeEEeec
Q 014001 107 VLAYITPWNS-----KGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLEL---RK--GDALVLPRVVLE 176 (432)
Q Consensus 107 vlgY~~~w~~-----~gy~~~~~~~~~lT~isp~w~~i~~~g~~~~~~g~~d~d~~~l~~~---~~--~~~kv~P~v~~~ 176 (432)
|+||++.|.. ..|.+.+.+.++||||.+.|+.++++|++......+|.+.+++.++ |+ +++||+ +++|
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g~~~~~~~~~d~~~~~~~~~~~lk~~~p~lkvl--isiG 78 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIIILDEWNDIDLGLYERFNALKEKNPNLKTL--LAIG 78 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCCCEEecCchhhhhhhHHHHHHHHHhhCCCceEE--EEEc
Confidence 6899999963 2578889999999999999999999998765444344455555554 54 578888 7789
Q ss_pred cCc------hhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccc
Q 014001 177 AFP------KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRN 250 (432)
Q Consensus 177 g~~------~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~ 250 (432)
||+ +.++++++.|++||++|++++++|+|||||||||.+. ..+ ..++|+++|+.||++||++|++.+
T Consensus 79 G~~~~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~-~~~--~~~~d~~~~~~ll~~lr~~l~~~~---- 151 (362)
T cd02872 79 GWNFGSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPG-QRG--GPPEDKENFVTLLKELREAFEPEA---- 151 (362)
T ss_pred CCCCCcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccc-cCC--CCHHHHHHHHHHHHHHHHHHHhhC----
Confidence 885 3689999999999999999999999999999975321 111 247899999999999999999732
Q ss_pred cccceEEEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCCC--CCCCCCCchh------------HHHHHH
Q 014001 251 RKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPH--NPGPNAPLKW------------ISFTLQ 316 (432)
Q Consensus 251 ~k~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~--~pgp~aPl~w------------v~~~l~ 316 (432)
++++|++++|+... .+...+|+++|+++||+|+|||||||++. .+||+||+.+ ++.+|+
T Consensus 152 --~~~~ls~av~~~~~-----~~~~~~d~~~l~~~vD~v~vmtYD~~~~~~~~~g~~spl~~~~~~~~~~~~~~v~~~v~ 224 (362)
T cd02872 152 --PRLLLTAAVSAGKE-----TIDAAYDIPEISKYLDFINVMTYDFHGSWEGVTGHNSPLYAGSADTGDQKYLNVDYAIK 224 (362)
T ss_pred --cCeEEEEEecCChH-----HHhhcCCHHHHhhhcceEEEecccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHH
Confidence 37999999998521 23356899999999999999999999874 7899999976 899999
Q ss_pred HHhcCCCCCCCCCCCeEEEeecccccccccCCCC-------------------CCCccCHHHHHHHHHhCCCceEeecCC
Q 014001 317 LLLGSPGIGTRSLARKIFLGINFYGNDFVLSEAS-------------------GGGAITGREYLNLLQKHKPALQWEKNS 377 (432)
Q Consensus 317 ~~~~~~~~~~~ip~~KivlGipfYG~~w~~~~~~-------------------~~~~i~~~~~~~l~~~~~~~~~wD~~~ 377 (432)
++++ .++|++||+|||||||++|++.... ..+.+++.++++++ +.+....||+++
T Consensus 225 ~~~~-----~gvp~~KlvlGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~~~~~~D~~~ 298 (362)
T cd02872 225 YWLS-----KGAPPEKLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSGWTVVWDDEQ 298 (362)
T ss_pred HHHH-----cCCCHHHeEeccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCCcEEEEeCCc
Confidence 9986 6899999999999999999875321 01234556666655 567889999999
Q ss_pred CceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCC-EEEEEEcCCCCc
Q 014001 378 GEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGT-GIAIWEIGQGLD 426 (432)
Q Consensus 378 ~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~la~~~gl-Gi~iW~Lg~d~d 426 (432)
++||+ |.+ .+||||||++|++.|+++|+++|| |+++|+|++||.
T Consensus 299 ~~~y~-~~~----~~~v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~DD~ 343 (362)
T cd02872 299 KVPYA-YKG----NQWVGYDDEESIALKVQYLKSKGLGGAMVWSIDLDDF 343 (362)
T ss_pred ceeEE-EEC----CEEEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcC
Confidence 99997 532 489999999999999999999999 999999999984
No 9
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=2.7e-51 Score=410.66 Aligned_cols=292 Identities=25% Similarity=0.399 Sum_probs=233.2
Q ss_pred cEEEEEcCCCCCC--chhhhhcCCCCcEEEEEEEEeecCCeEEEecCCCCC-ChHHHHHHHh--CCCcEEeEEeeccCc-
Q 014001 106 PVLAYITPWNSKG--YELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNA-DAGWLLELRK--GDALVLPRVVLEAFP- 179 (432)
Q Consensus 106 ~vlgY~~~w~~~g--y~~~~~~~~~lT~isp~w~~i~~~g~~~~~~g~~d~-d~~~l~~~~~--~~~kv~P~v~~~g~~- 179 (432)
+|+||+++|+..+ |++.+.+..+||||+++|+.++++|++.......++ .-..+..+|+ +++|+++ +++||.
T Consensus 1 ~~~~Y~~~w~~~~~~~~~~~~~~~~~thv~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~kvl~--svgg~~~ 78 (334)
T smart00636 1 RVVGYFTNWGVYGRNFPVDDIPASKLTHIIYAFANIDPDGTVTIGDEWADIGNFGQLKALKKKNPGLKVLL--SIGGWTE 78 (334)
T ss_pred CEEEEECchhccCCCCChhHCCcccCcEEEEeeeeeCCCCCEeeCCcchhhhhHHHHHHHHHhCCCCEEEE--EEeCCCC
Confidence 4899999998665 889999999999999999999998876432222221 1234566665 5889994 567764
Q ss_pred ----hhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccce
Q 014001 180 ----KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHL 255 (432)
Q Consensus 180 ----~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~ 255 (432)
+.++++++.|++||++|++++++|+|||||||||. +. ....++++|+.||++||++|++..+ . ++++
T Consensus 79 s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~-----~~-~~~~d~~~~~~ll~~lr~~l~~~~~--~-~~~~ 149 (334)
T smart00636 79 SDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEY-----PG-ARGDDRENYTALLKELREALDKEGA--E-GKGY 149 (334)
T ss_pred CcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcC-----CC-CCccHHHHHHHHHHHHHHHHHHhcc--c-CCce
Confidence 47899999999999999999999999999999642 21 1126889999999999999996411 1 3589
Q ss_pred EEEEEECCCCCCCCCCCCCCCCC-HHHHhccccEEEEeeccCCCC--CCCCCCCCchh---------HHHHHHHHhcCCC
Q 014001 256 QLVYVIGPPHSEKFQPHDFGPVD-LQSLSDAVDGFSLMTYDFSGP--HNPGPNAPLKW---------ISFTLQLLLGSPG 323 (432)
Q Consensus 256 ~lsvavpp~~~~~~~~~~~~~~d-~~~l~~~vD~v~lMtYD~~~~--~~pgp~aPl~w---------v~~~l~~~~~~~~ 323 (432)
+|++++||.... ....+| +++|+++||+|+|||||+|++ ..+||+||+.| ++.+|+++++
T Consensus 150 ~lsi~v~~~~~~-----~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~~~~g~~spl~~~~~~~~~~~v~~~v~~~~~--- 221 (334)
T smart00636 150 LLTIAVPAGPDK-----IDKGYGDLPAIAKYLDFINLMTYDFHGAWSNPTGHNAPLYAGPGDPEKYNVDYAVKYYLC--- 221 (334)
T ss_pred EEEEEecCChHH-----HHhhhhhHHHHHhhCcEEEEeeeccCCCCCCCCCCCCcCCCCCCCCCCccHHHHHHHHHH---
Confidence 999999985321 112478 599999999999999999986 36899999987 8889999986
Q ss_pred CCCCCCCCeEEEeecccccccccCCCC---------C----------CCccCHHHHHHHHHhCCCceEeecCCCceeEEE
Q 014001 324 IGTRSLARKIFLGINFYGNDFVLSEAS---------G----------GGAITGREYLNLLQKHKPALQWEKNSGEHFFFF 384 (432)
Q Consensus 324 ~~~~ip~~KivlGipfYG~~w~~~~~~---------~----------~~~i~~~~~~~l~~~~~~~~~wD~~~~~~y~~y 384 (432)
.++|++||+|||||||++|++.... + ++.++ |.++++..+....||++++.|| .|
T Consensus 222 --~gvp~~KlvlGip~YG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---y~ei~~~~~~~~~~d~~~~~~y-~~ 295 (334)
T smart00636 222 --KGVPPSKLVLGIPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVD---YREICKLLGATVVWDDTAKAPY-AY 295 (334)
T ss_pred --cCCCHHHeEEeeccccCccccCCCCcCCCCCcccCCCCCCCCCCcccchh---HHHHHhhcCcEEEEcCCCceeE-EE
Confidence 6899999999999999999876431 0 12233 4555555588999999988887 57
Q ss_pred EcCCCceEEEEeCCHHHHHHHHHHHHHcCC-EEEEEEcCCC
Q 014001 385 SDENQVKHAVFYPSLISISMRLEEAKLWGT-GIAIWEIGQG 424 (432)
Q Consensus 385 ~d~~g~~~~V~ydd~~Si~~K~~la~~~gl-Gi~iW~Lg~d 424 (432)
.+ +.+|||||||++|++.|+++|+++|| ||++|+||+|
T Consensus 296 ~~--~~~~~v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 296 NP--GTGQWVSYDDPRSIKAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred EC--CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEEeecCC
Confidence 43 33699999999999999999999999 9999999997
No 10
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=6e-49 Score=391.99 Aligned_cols=277 Identities=20% Similarity=0.352 Sum_probs=221.0
Q ss_pred EEEEEcCCCCC--Cchhh-hhcCCCCcEEEEEEEEeecCCeEEEecC----------------CCCCChHH---HHHHHh
Q 014001 107 VLAYITPWNSK--GYELA-KMFNSKFTHLSPVWYDLKSQGTSLILEG----------------RHNADAGW---LLELRK 164 (432)
Q Consensus 107 vlgY~~~w~~~--gy~~~-~~~~~~lT~isp~w~~i~~~g~~~~~~g----------------~~d~d~~~---l~~~~~ 164 (432)
|+||++.|... ++... +.+.++||||.+.++.++++|.+..... ..+...+. +..+|+
T Consensus 1 v~~Y~~~W~~~~~~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~ 80 (322)
T cd06548 1 VVGYFTNWGIYGRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLRKLKQ 80 (322)
T ss_pred CEEEeCCCcccCCCCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHHHHHH
Confidence 68999999743 33333 4778899999999999999987653210 01112233 334554
Q ss_pred --CCCcEEeEEeeccCc-----hhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCC---CCCCHHHHHHHHHH
Q 014001 165 --GDALVLPRVVLEAFP-----KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYG---ILHDPELRNMALEF 234 (432)
Q Consensus 165 --~~~kv~P~v~~~g~~-----~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e---~~~~~~d~~~~~~f 234 (432)
+++|++ +++|||+ +.++++++.|++||+++++++++|+|||||||||.+.. .+ ....++++++|+.|
T Consensus 81 ~~p~lkvl--~siGG~~~s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~-~~~~~~~~~~~d~~~~~~l 157 (322)
T cd06548 81 KNPHLKIL--LSIGGWTWSGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGS-GGAPGNVARPEDKENFTLL 157 (322)
T ss_pred hCCCCEEE--EEEeCCCCCCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCC-CCCCCCCCChhHHHHHHHH
Confidence 578999 6778886 36899999999999999999999999999999763211 00 01237899999999
Q ss_pred HHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCC--CCCCCCCCch---
Q 014001 235 IKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP--HNPGPNAPLK--- 309 (432)
Q Consensus 235 l~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~--~~pgp~aPl~--- 309 (432)
|++||++|++.+.. ..++++|++++|+... ....+|+++|+++||+|+|||||||++ ..+||+|||.
T Consensus 158 l~~Lr~~l~~~~~~--~~~~~~Ls~av~~~~~------~~~~~~~~~l~~~vD~vnlMtYD~~g~w~~~~g~~spL~~~~ 229 (322)
T cd06548 158 LKELREALDALGAE--TGRKYLLTIAAPAGPD------KLDKLEVAEIAKYLDFINLMTYDFHGAWSNTTGHHSNLYASP 229 (322)
T ss_pred HHHHHHHHHHhhhc--cCCceEEEEEccCCHH------HHhcCCHHHHhhcCCEEEEEEeeccCCCCCCCCCCCCCCCCC
Confidence 99999999975322 1236899999988521 245678999999999999999999987 4799999984
Q ss_pred -------hHHHHHHHHhcCCCCCCCCCCCeEEEeecccccccccCCCCCCCccCHHHHHHHHHhCCCceEeecCCCceeE
Q 014001 310 -------WISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFF 382 (432)
Q Consensus 310 -------wv~~~l~~~~~~~~~~~~ip~~KivlGipfYG~~w~~~~~~~~~~i~~~~~~~l~~~~~~~~~wD~~~~~~y~ 382 (432)
.++.++++++. .|+|++||+||||||||.|++ ....||+++++||+
T Consensus 230 ~~~~~~~~v~~~v~~~~~-----~gvp~~KlvlGip~YGr~~~~----------------------~~~~~D~~~~~~y~ 282 (322)
T cd06548 230 ADPPGGYSVDAAVNYYLS-----AGVPPEKLVLGVPFYGRGWTG----------------------YTRYWDEVAKAPYL 282 (322)
T ss_pred CCCCCCccHHHHHHHHHH-----cCCCHHHeEEEecccccccCC----------------------cEEEEcCCcceeEE
Confidence 48899999986 689999999999999999975 46799999999996
Q ss_pred EEEcCCCceEEEEeCCHHHHHHHHHHHHHcCC-EEEEEEcCCC
Q 014001 383 FFSDENQVKHAVFYPSLISISMRLEEAKLWGT-GIAIWEIGQG 424 (432)
Q Consensus 383 ~y~d~~g~~~~V~ydd~~Si~~K~~la~~~gl-Gi~iW~Lg~d 424 (432)
|.+ +..+||+|||++||+.|++||+++|| |+++|+|+||
T Consensus 283 -~~~--~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 283 -YNP--STKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred -EeC--CCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 632 34689999999999999999999999 9999999997
No 11
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=1.5e-47 Score=393.06 Aligned_cols=298 Identities=19% Similarity=0.215 Sum_probs=224.5
Q ss_pred cEEEEEcCCCC-----CCchhhhhcCC--CCcEEEEEEEEeecCCe-EEEecCCCCCCh---HHHHHHHh--CCCcEEeE
Q 014001 106 PVLAYITPWNS-----KGYELAKMFNS--KFTHLSPVWYDLKSQGT-SLILEGRHNADA---GWLLELRK--GDALVLPR 172 (432)
Q Consensus 106 ~vlgY~~~w~~-----~gy~~~~~~~~--~lT~isp~w~~i~~~g~-~~~~~g~~d~d~---~~l~~~~~--~~~kv~P~ 172 (432)
+|+||+..|.. ..|.+.+++.. +||||.+.++.+++++. +.......+.+. ..+..+|+ +++|++
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~lKvl-- 78 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAITSLKRKYPHLKVL-- 78 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHHHHHhhCCCCeEE--
Confidence 47999999953 24556666654 49999999999998754 332221112222 23455665 678999
Q ss_pred EeeccCc-----------hhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeeccccccc------------------CCC--
Q 014001 173 VVLEAFP-----------KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTA------------------YGI-- 221 (432)
Q Consensus 173 v~~~g~~-----------~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~------------------~e~-- 221 (432)
+++|||+ +.++++++.|++||+++++++++|+|||||||||.|-.. |.+
T Consensus 79 lSiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~ 158 (413)
T cd02873 79 LSVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDS 158 (413)
T ss_pred EeecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhccccccc
Confidence 6779884 368999999999999999999999999999998754210 000
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCC
Q 014001 222 ---LHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSG 298 (432)
Q Consensus 222 ---~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~ 298 (432)
...++|+++|+.||+|||++|++ .+++|+++++|.... ...+|+++|+++||+|+|||||||+
T Consensus 159 ~~~~~~~~d~~nf~~Ll~elr~~l~~--------~~~~ls~av~~~~~~------~~~~d~~~l~~~vD~inlMtYD~~g 224 (413)
T cd02873 159 VVDEKAAEHKEQFTALVRELKNALRP--------DGLLLTLTVLPHVNS------TWYFDVPAIANNVDFVNLATFDFLT 224 (413)
T ss_pred ccCCCChhHHHHHHHHHHHHHHHhcc--------cCcEEEEEecCCchh------ccccCHHHHhhcCCEEEEEEecccC
Confidence 01478999999999999999987 478999999875321 1248999999999999999999998
Q ss_pred CC----CCCCCCCch---------hHHHHHHHHhcCCCCCCCCCCCeEEEeecccccccccCCCC------------C--
Q 014001 299 PH----NPGPNAPLK---------WISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEAS------------G-- 351 (432)
Q Consensus 299 ~~----~pgp~aPl~---------wv~~~l~~~~~~~~~~~~ip~~KivlGipfYG~~w~~~~~~------------~-- 351 (432)
++ .+|++|||+ +++.+|+++++ .|+|++||+||||||||.|++.... +
T Consensus 225 ~~~~~~~~~~~apL~~~~~~~~~~~v~~~v~~~~~-----~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~ 299 (413)
T cd02873 225 PERNPEEADYTAPIYELYERNPHHNVDYQVKYWLN-----QGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPG 299 (413)
T ss_pred CCCCCCccCcCCccCCCccccccccHHHHHHHHHH-----cCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCC
Confidence 63 367889986 68889999886 6899999999999999999864310 0
Q ss_pred --------CCccCHHHHHHHHHhCC--------CceEeecCCCc-eeEEEEcCC--C-ceEEEEeCCHHHHHHHHHHHHH
Q 014001 352 --------GGAITGREYLNLLQKHK--------PALQWEKNSGE-HFFFFSDEN--Q-VKHAVFYPSLISISMRLEEAKL 411 (432)
Q Consensus 352 --------~~~i~~~~~~~l~~~~~--------~~~~wD~~~~~-~y~~y~d~~--g-~~~~V~ydd~~Si~~K~~la~~ 411 (432)
.+.+++.++++++...+ .+..||++.+. +| .|.+.+ + ...||+|||++||+.|++||++
T Consensus 300 ~~G~~~~~~g~l~y~ei~~~~~~~~~~~g~~~~~~~~~d~~~~~~~y-~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~ 378 (413)
T cd02873 300 PAGPQTKTPGLLSWPEICSKLPNPANLKGADAPLRKVGDPTKRFGSY-AYRPADENGEHGIWVSYEDPDTAANKAGYAKA 378 (413)
T ss_pred CCCCCcCCCccccHHHHHHhhccCccccccccceeEeecccccccce-EEeccccCCCCCeEEEeCCHHHHHHHHHHHHh
Confidence 12356666666555421 23458887764 55 453321 1 2469999999999999999999
Q ss_pred cCC-EEEEEEcCCCC
Q 014001 412 WGT-GIAIWEIGQGL 425 (432)
Q Consensus 412 ~gl-Gi~iW~Lg~d~ 425 (432)
+|| |+|+|+|++||
T Consensus 379 ~gLgGv~~W~l~~DD 393 (413)
T cd02873 379 KGLGGVALFDLSLDD 393 (413)
T ss_pred CCCceEEEEeeecCc
Confidence 999 99999999997
No 12
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=3.2e-47 Score=382.68 Aligned_cols=287 Identities=18% Similarity=0.230 Sum_probs=217.8
Q ss_pred cEEEEEcCCCC----CCchhhhhcCCCCcEEEEEEEEeecCCeEEEecCCCCCChHHHHHHHh-CCCcEEeEEeeccCch
Q 014001 106 PVLAYITPWNS----KGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRK-GDALVLPRVVLEAFPK 180 (432)
Q Consensus 106 ~vlgY~~~w~~----~gy~~~~~~~~~lT~isp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~-~~~kv~P~v~~~g~~~ 180 (432)
+++||++.|.. ..|.+.+++.++||||.+.++.++++|++... +. .+-+.++.+ +++|++ +++|||+.
T Consensus 1 ~~v~Y~~~w~~~r~~~~~~~~~i~~~~~THi~yaf~~~~~~g~l~~~----~~-~~~~~~~~~~k~lkvl--lsiGG~~~ 73 (345)
T cd02878 1 KNIAYFEAYNLDRPCLNMDVTQIDTSKYTHIHFAFANITSDFSVDVS----SV-QEQFSDFKKLKGVKKI--LSFGGWDF 73 (345)
T ss_pred CEEEEEChhhcCCCCCCCCHhHCCcccCCEEEEEeEeecCCCeEeec----cc-HHHHHHHHhhcCcEEE--EEEeCCCC
Confidence 47899999953 24677888999999999999999999876532 11 222333433 568888 78899851
Q ss_pred -----------hhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCC-C--CCCHHHHHHHHHHHHHHHHHhhccc
Q 014001 181 -----------ELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYG-I--LHDPELRNMALEFIKQLGNALHSVN 246 (432)
Q Consensus 181 -----------~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e-~--~~~~~d~~~~~~fl~eL~~~L~~~~ 246 (432)
.++ +++.|++||+++++++++|+|||||||||.|...-. . ...++|+++|+.||++||++|++
T Consensus 74 s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~-- 150 (345)
T cd02878 74 STSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPS-- 150 (345)
T ss_pred CCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCc--
Confidence 244 899999999999999999999999999864321000 0 01468999999999999999985
Q ss_pred cccccccceEEEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCCC-C------CCCC--------CCchhH
Q 014001 247 SVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPH-N------PGPN--------APLKWI 311 (432)
Q Consensus 247 ~~~~~k~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~-~------pgp~--------aPl~wv 311 (432)
+++|++++|+.. .....+|+++|+++||+|+|||||||++. . |++. .+...+
T Consensus 151 -------~~~ls~a~~~~~------~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~~~~~~p~~p~~~~~~~~~~~~~~ 217 (345)
T cd02878 151 -------GKSLSIAAPASY------WYLKGFPIKDMAKYVDYIVYMTYDLHGQWDYGNKWASPGCPAGNCLRSHVNKTET 217 (345)
T ss_pred -------CcEEEEEcCCCh------hhhcCCcHHHHHhhCcEEEEEeecccCCcCccCCcCCCCCCcccccccCCCchhH
Confidence 678999988742 12356999999999999999999999862 1 1111 112247
Q ss_pred HHHHHHHhcCCCCCCCCCCCeEEEeecccccccccCCCC---------CC----------CccCH---HHHHH-HHHhCC
Q 014001 312 SFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEAS---------GG----------GAITG---REYLN-LLQKHK 368 (432)
Q Consensus 312 ~~~l~~~~~~~~~~~~ip~~KivlGipfYG~~w~~~~~~---------~~----------~~i~~---~~~~~-l~~~~~ 368 (432)
+++|++++. .|+|++||+||||||||.|++.... +. +...+ .+.+. ++++.+
T Consensus 218 ~~~v~~~~~-----~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~~ 292 (345)
T cd02878 218 LDALSMITK-----AGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKSK 292 (345)
T ss_pred HHHHHHHHH-----cCCCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccCC
Confidence 788998886 6999999999999999999876310 10 01112 23232 223456
Q ss_pred CceEeecCCCceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCC-EEEEEEcCCC
Q 014001 369 PALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGT-GIAIWEIGQG 424 (432)
Q Consensus 369 ~~~~wD~~~~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~la~~~gl-Gi~iW~Lg~d 424 (432)
.+..||+++++||+.|.+ .+||+|||++||+.|++||+++|| |+++|+|++|
T Consensus 293 ~~~~~d~~~~~~y~~~~~----~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 293 NKRWYDTDSDSDILVYDD----DQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred CcEEEecCCCccEEEEcC----CEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 789999999999987732 279999999999999999999999 9999999986
No 13
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.8e-46 Score=367.02 Aligned_cols=302 Identities=19% Similarity=0.312 Sum_probs=229.9
Q ss_pred ccEEEEEcCCCC--C-CchhhhhcCCCCcEEEEEEEEeecCCeEEE--------ec---------CCCCC--Ch---HHH
Q 014001 105 YPVLAYITPWNS--K-GYELAKMFNSKFTHLSPVWYDLKSQGTSLI--------LE---------GRHNA--DA---GWL 159 (432)
Q Consensus 105 ~~vlgY~~~w~~--~-gy~~~~~~~~~lT~isp~w~~i~~~g~~~~--------~~---------g~~d~--d~---~~l 159 (432)
.+|+|||+.|.. + .|.+.++...++|||.+.|+.|+++|.... .. +.+.. -. +.|
T Consensus 38 ~rvvgYY~sWs~~d~~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G~~~~L 117 (441)
T COG3325 38 FKVVGYYTSWSQYDRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKGHFGAL 117 (441)
T ss_pred ceEEEEecccccCCCcccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccchHHHH
Confidence 589999999963 3 677889999999999999999999984210 00 11111 11 245
Q ss_pred HHHHh--CCCcEEeEEeeccCc-----hhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeeccccccc--CCCCCCHHHHHH
Q 014001 160 LELRK--GDALVLPRVVLEAFP-----KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTA--YGILHDPELRNM 230 (432)
Q Consensus 160 ~~~~~--~~~kv~P~v~~~g~~-----~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~--~e~~~~~~d~~~ 230 (432)
..+|+ +++|++ |++|||+ +.+..+++.|++|+++.|+|+++++|||||||||.|... -+....+++.++
T Consensus 118 ~~lk~~~~d~k~l--~SIGGWs~S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~d~~n 195 (441)
T COG3325 118 FDLKATYPDLKTL--ISIGGWSDSGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKDKAN 195 (441)
T ss_pred HHHhhhCCCceEE--EeecccccCCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCcccHHH
Confidence 55666 567888 7889997 589999999999999999999999999999998765321 011135799999
Q ss_pred HHHHHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCCC--CCCCCCCc
Q 014001 231 ALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPH--NPGPNAPL 308 (432)
Q Consensus 231 ~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~--~pgp~aPl 308 (432)
|+.||++||++|...+.+. .+++.||+|.|+.. ......+..+++++|||+|+|||||||+. ..|++|||
T Consensus 196 y~~Ll~eLR~~LD~a~~ed--gr~Y~LTiA~~as~------~~l~~~~~~~~~~~vDyiNiMTYDf~G~Wn~~~Gh~a~L 267 (441)
T COG3325 196 YVLLLQELRKKLDKAGVED--GRHYQLTIAAPASK------DKLEGLNHAEIAQYVDYINIMTYDFHGAWNETLGHHAAL 267 (441)
T ss_pred HHHHHHHHHHHHhhccccc--CceEEEEEecCCch------hhhhcccHHHHHHHHhhhheeeeeccccccccccccccc
Confidence 9999999999999865443 24699999999853 23458899999999999999999999983 78999998
Q ss_pred hh-------------HH------HHHHHHhcCCCCCCCCCCCeEEEeecccccccccCCCCC-------CCcc-------
Q 014001 309 KW-------------IS------FTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASG-------GGAI------- 355 (432)
Q Consensus 309 ~w-------------v~------~~l~~~~~~~~~~~~ip~~KivlGipfYG~~w~~~~~~~-------~~~i------- 355 (432)
+- +. .-++.... .++||+||+||+|||||.|....+.. ...+
T Consensus 268 y~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~~ 342 (441)
T COG3325 268 YGTPKDPPLANGGFYVDAEVDGIDWLEEGFA-----GDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPK 342 (441)
T ss_pred ccCCCCCccccCCeeEEEEechhHHHHhhhc-----cCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCCC
Confidence 71 11 12333333 67999999999999999997654210 0000
Q ss_pred -CH------HHH---HHHHH----hCCCceEeecCCCceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCC-EEEEEE
Q 014001 356 -TG------REY---LNLLQ----KHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGT-GIAIWE 420 (432)
Q Consensus 356 -~~------~~~---~~l~~----~~~~~~~wD~~~~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~la~~~gl-Gi~iW~ 420 (432)
++ .++ ..+.. +.+...+||+++++||+ |.+++| .+|+|||++|++.|.+||+++|| |+|+|+
T Consensus 343 Gtw~a~n~~~~~~~~~~l~~n~~~~~g~~~~~d~~a~apyL-~n~~~~--vFiSyDd~rSvkaK~eYv~~n~LGG~m~We 419 (441)
T COG3325 343 GTWEAGNGDKDYGKAYDLDANNAGKNGYERYWDDVAKAPYL-YNPEKG--VFISYDDPRSVKAKAEYVADNNLGGMMFWE 419 (441)
T ss_pred CcccccccCccchhhccccccccCCCCeeEeccccccccee-ecCCCC--eEEEccCCcchhhHHHHHhhcCccceEEEE
Confidence 00 112 12222 23457899999999997 655554 79999999999999999999999 999999
Q ss_pred cCCC
Q 014001 421 IGQG 424 (432)
Q Consensus 421 Lg~d 424 (432)
+.||
T Consensus 420 ~sgD 423 (441)
T COG3325 420 ISGD 423 (441)
T ss_pred ecCC
Confidence 9999
No 14
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-44 Score=368.43 Aligned_cols=304 Identities=21% Similarity=0.297 Sum_probs=235.3
Q ss_pred CCCCCccEEEEEcCCCCCCchhhhhcCCCCcEEEEEEEEeecCCeEEEecCCCC-CChHHHHHHHh--CCCcEEeEEeec
Q 014001 100 HRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHN-ADAGWLLELRK--GDALVLPRVVLE 176 (432)
Q Consensus 100 ~~~~~~~vlgY~~~w~~~gy~~~~~~~~~lT~isp~w~~i~~~g~~~~~~g~~d-~d~~~l~~~~~--~~~kv~P~v~~~ 176 (432)
...+.....||+..|.. .....+....+|||+.+.++.++++|......+.+. --......+|+ +++|+| +++|
T Consensus 53 ~~~c~~~~~~~~~~~~~-~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~~~~~f~~~~~~~k~~n~~vK~l--lSIG 129 (432)
T KOG2806|consen 53 NTVCEKSIVGYYPSRIG-PETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGARTMNRFSSYNQTAKSSNPTVKVM--ISIG 129 (432)
T ss_pred cccccceeEEEeCCCCC-CCCccccChhhcCcceEEEeeecccccEEeccchhhhhhHHHHHHHHhhCCCceEE--EEec
Confidence 34567899999998872 346678889999999999999999998764322211 11234444554 467777 8999
Q ss_pred cC-c-----hhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccc
Q 014001 177 AF-P-----KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRN 250 (432)
Q Consensus 177 g~-~-----~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~ 250 (432)
|| . +.|++|++.|+.||+++++++++|+||||||||+ |+. ..+.|+.+|..|++|||++|..+.+...
T Consensus 130 G~~~ns~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We-----~P~-~~~~d~~~~~~~i~elr~~~~~~~~~~~ 203 (432)
T KOG2806|consen 130 GSHGNSGLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWE-----WPL-FTPSDQLEFSRFIQELRSAFARETLKSP 203 (432)
T ss_pred CCCCCccchhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeE-----CCC-CchhhHHHHHHHHHHHHHHHHHHhhccC
Confidence 99 4 4799999999999999999999999999999974 332 1578999999999999999998643322
Q ss_pred cccceEEEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCC--C--CCCCCCCch----------hHHHHHH
Q 014001 251 RKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP--H--NPGPNAPLK----------WISFTLQ 316 (432)
Q Consensus 251 ~k~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~--~--~pgp~aPl~----------wv~~~l~ 316 (432)
+...++.+++++++. ..+...||++.|.++|||+||||||||++ + .+||+||++ -++..++
T Consensus 204 ~~~~~l~~~v~~~~~-----~~~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~k 278 (432)
T KOG2806|consen 204 DTAKVLEAVVADSKQ-----SAYSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDSLLK 278 (432)
T ss_pred CccceeeeccccCcc-----chhhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhhhHH
Confidence 222233333333321 12456899999999999999999999997 3 589999997 3788999
Q ss_pred HHhcCCCCCCCCCCCeEEEeecccccccccCCCC-------------------CCCccCHHHHHHHHHhCCCceEeecCC
Q 014001 317 LLLGSPGIGTRSLARKIFLGINFYGNDFVLSEAS-------------------GGGAITGREYLNLLQKHKPALQWEKNS 377 (432)
Q Consensus 317 ~~~~~~~~~~~ip~~KivlGipfYG~~w~~~~~~-------------------~~~~i~~~~~~~l~~~~~~~~~wD~~~ 377 (432)
|+++ .+.|++|++|||||||+.|++.... +.+.+++.++++...+.+ ...||+.+
T Consensus 279 y~~~-----~~~~~~Kl~~gip~yg~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~-~~~~d~~~ 352 (432)
T KOG2806|consen 279 YWTE-----KGLPPSKLVLALPFYGRSWQLLEDSRSSAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG-VTHWDEET 352 (432)
T ss_pred HHhh-----cCCCchheEEEEecceehhhhcCCcCCCCCccCCCcccCccccccCceeeHHHHHHHhcccC-CceecCCc
Confidence 9997 5899999999999999999886521 123345555555333333 78999999
Q ss_pred CceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCC-EEEEEEcCCCCc
Q 014001 378 GEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGT-GIAIWEIGQGLD 426 (432)
Q Consensus 378 ~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~la~~~gl-Gi~iW~Lg~d~d 426 (432)
+.||. |.. ...+||+|||++||+.|++||+++|| |+++|.+++||.
T Consensus 353 ~~~Y~-~~~--~~~~wvtyen~~Si~~K~~Yvk~~~lGGv~iW~vd~DD~ 399 (432)
T KOG2806|consen 353 QTPYL-YNI--PYDQWVTYENERSIHIKADYAKDEGLGGVAIWNIDQDDE 399 (432)
T ss_pred eeeeE-Eec--CCCeEEecCCHHHHHHHHHHHHhcCCceEEEEeccCCCC
Confidence 99884 743 34689999999999999999999999 999999999986
No 15
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=8.2e-45 Score=363.89 Aligned_cols=296 Identities=28% Similarity=0.447 Sum_probs=230.2
Q ss_pred ccEEEEEcCCCC--CC-chhhhhcCCCCcEEEEEEEEeecCCeEEEe---cCCCCCC---hHHHHHHHh--CCCcEEeEE
Q 014001 105 YPVLAYITPWNS--KG-YELAKMFNSKFTHLSPVWYDLKSQGTSLIL---EGRHNAD---AGWLLELRK--GDALVLPRV 173 (432)
Q Consensus 105 ~~vlgY~~~w~~--~g-y~~~~~~~~~lT~isp~w~~i~~~g~~~~~---~g~~d~d---~~~l~~~~~--~~~kv~P~v 173 (432)
++|+||++.|+. .+ |.+.....++||||.++|..++.++..... ....+.. ...+..+++ +++|+++
T Consensus 1 ~~vv~Y~~~~~~~~~~~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvll-- 78 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPGSYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNLKELKAKNPGVKVLL-- 78 (343)
T ss_dssp BEEEEEEEGGGGSSTGCSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHHHHHHHHHTT-EEEE--
T ss_pred CEEEEEECCcCCCCCCCCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHHHHHHhhccCceEEE--
Confidence 479999999963 44 677788889999999999999999976320 0011122 334555554 6899994
Q ss_pred eeccC--c----hhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCC-CCHHHHHHHHHHHHHHHHHhhccc
Q 014001 174 VLEAF--P----KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGIL-HDPELRNMALEFIKQLGNALHSVN 246 (432)
Q Consensus 174 ~~~g~--~----~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~-~~~~d~~~~~~fl~eL~~~L~~~~ 246 (432)
+++|| + ..++.+++.|++||++|++++++|+|||||||||. +.. ..+.++++|..||++|+++|++.+
T Consensus 79 sigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~-----~~~~~~~~~~~~~~~~l~~L~~~l~~~~ 153 (343)
T PF00704_consen 79 SIGGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEY-----PSSSGDPQDKDNYTAFLKELRKALKRAN 153 (343)
T ss_dssp EEEETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESS-----TTSTSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EeccccccccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeee-----ccccccchhhhhhhhhhhhhhhhhcccc
Confidence 55777 2 36788999999999999999999999999999753 211 124699999999999999999742
Q ss_pred cccccccceEEEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCC--CCCCCCCCch---------hHHHHH
Q 014001 247 SVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP--HNPGPNAPLK---------WISFTL 315 (432)
Q Consensus 247 ~~~~~k~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~--~~pgp~aPl~---------wv~~~l 315 (432)
+.. +++.|++++|+... ....+|++.|.++||+|+|||||++++ ..+||++|+. +++.++
T Consensus 154 ~~~---~~~~ls~a~p~~~~------~~~~~~~~~l~~~vD~v~~m~yD~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 224 (343)
T PF00704_consen 154 RSG---KGYILSVAVPPSPD------YYDKYDYKELAQYVDYVNLMTYDYHGPWSDVTGPNAPLYDSSWDSNYYSVDSAV 224 (343)
T ss_dssp HHH---STSEEEEEEECSHH------HHTTHHHHHHHTTSSEEEEETTSSSSTTSSBETTSSSSSHTTTSGTSSSHHHHH
T ss_pred ccc---ceeEEeeccccccc------cccccccccccccccccccccccCCCCcccccccccccccCCccCCCceeeeeh
Confidence 110 27999999998521 234559999999999999999999985 3678888865 378899
Q ss_pred HHHhcCCCCCCCCCCCeEEEeecccccccccCCCCC-----------------CCccCHHHHHHHHHhCCCceEeecCCC
Q 014001 316 QLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASG-----------------GGAITGREYLNLLQKHKPALQWEKNSG 378 (432)
Q Consensus 316 ~~~~~~~~~~~~ip~~KivlGipfYG~~w~~~~~~~-----------------~~~i~~~~~~~l~~~~~~~~~wD~~~~ 378 (432)
++++. .|+|++||+||+|+||+.|++..... .+.+.+.++++..++++....||+.++
T Consensus 225 ~~~~~-----~g~p~~Kl~lglp~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 299 (343)
T PF00704_consen 225 QYWIK-----AGVPPSKLVLGLPFYGRSWTLVNGSPNGPWGPAYWSPGKGTKNAGILSYYELCALLKSNGYTVQWDDTAQ 299 (343)
T ss_dssp HHHHH-----TTSTGGGEEEEEESEEEEEESSSSTTSTTTBBEESEETTTTSBTTEEEHHHHHHHTHHTTEEEEEETTTT
T ss_pred hhhcc-----ccCChhheeecCCcccccceecCCcCCCCCCcccccccccccCCCccccccchhhcccCCcceEEeeccc
Confidence 99986 68999999999999999999876421 234667777777777888999999999
Q ss_pred ceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCC-EEEEEEcCCC
Q 014001 379 EHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGT-GIAIWEIGQG 424 (432)
Q Consensus 379 ~~y~~y~d~~g~~~~V~ydd~~Si~~K~~la~~~gl-Gi~iW~Lg~d 424 (432)
++|+.+ .+ ..+|++|||++|++.|+++++++|| |+++|+|++|
T Consensus 300 ~~y~~~-~~--~~~~i~~e~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 300 APYAYN-DD--KKHWISYEDPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp EEEEEE-TT--TTEEEEE--HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred ceEEEe-cC--CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 999754 32 3589999999999999999999999 9999999987
No 16
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=1.1e-42 Score=335.63 Aligned_cols=240 Identities=22% Similarity=0.242 Sum_probs=195.1
Q ss_pred EEEEEcCCCCCCchhhhhcCCCCcEEEEEEEEeecCCeEEEecCCCCCChHHHHHHHhCCCcEEeEEeeccCc----hhh
Q 014001 107 VLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRKGDALVLPRVVLEAFP----KEL 182 (432)
Q Consensus 107 vlgY~~~w~~~gy~~~~~~~~~lT~isp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~~~~kv~P~v~~~g~~----~~~ 182 (432)
|+||++.|+.....+.+.+..+||||+|.|+.++++|++....+..+ ...++..+|++++||+|+| +||. ..+
T Consensus 1 vigyy~~w~~~~~~~~~~~~~~lThv~~~f~~i~~~G~l~~~~~~~~-~~~~~~~~~~~~~kvl~si--gg~~~~~~~~~ 77 (253)
T cd06545 1 VVGYLPNYDDLNALSPTIDFSKLTHINLAFANPDANGTLNANPVRSE-LNSVVNAAHAHNVKILISL--AGGSPPEFTAA 77 (253)
T ss_pred CEEEeCCcccccCCcccCChhhCCeEEEEEEEECCCCeEEecCcHHH-HHHHHHHHHhCCCEEEEEE--cCCCCCcchhh
Confidence 68999999876545678889999999999999999998643211111 1356666777889999665 6664 368
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEEC
Q 014001 183 LRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIG 262 (432)
Q Consensus 183 l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavp 262 (432)
+++++.|++|++++++++++|+|||||||||. +. . .+++|..|+++||++|++ .++.|+++++
T Consensus 78 ~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~-----~~--~--~~~~~~~fv~~Lr~~l~~--------~~~~lt~av~ 140 (253)
T cd06545 78 LNDPAKRKALVDKIINYVVSYNLDGIDVDLEG-----PD--V--TFGDYLVFIRALYAALKK--------EGKLLTAAVS 140 (253)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCceeEEeec-----cC--c--cHhHHHHHHHHHHHHHhh--------cCcEEEEEcc
Confidence 89999999999999999999999999999753 22 1 278999999999999986 3678998887
Q ss_pred CCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCCC---CCCCCCCchhHHHHHHHHhcCCCCCCCC-CCCeEEEeec
Q 014001 263 PPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPH---NPGPNAPLKWISFTLQLLLGSPGIGTRS-LARKIFLGIN 338 (432)
Q Consensus 263 p~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~---~pgp~aPl~wv~~~l~~~~~~~~~~~~i-p~~KivlGip 338 (432)
+... .+...++.++||+++|||||+|++. .|||+||+.|++.+++++.. .++ |++||+||||
T Consensus 141 ~~~~---------~~~~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~~~~~~v~~~~~-----~g~ip~~KlvlGlp 206 (253)
T cd06545 141 SWNG---------GAVSDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYDDAVNDLNYWNE-----RGLASKDKLVLGLP 206 (253)
T ss_pred Cccc---------ccccHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchHhHHHHHHHHHH-----cCCCCHHHEEEEeC
Confidence 6421 1123567899999999999998763 69999999999999999875 466 9999999999
Q ss_pred ccccccccCCCCCCCccCHHHHHHHHHhCCCceEeecCCCceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCC-EEE
Q 014001 339 FYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGT-GIA 417 (432)
Q Consensus 339 fYG~~w~~~~~~~~~~i~~~~~~~l~~~~~~~~~wD~~~~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~la~~~gl-Gi~ 417 (432)
||||+| +|+++.++++|+++|+++ + |+|
T Consensus 207 ~YG~~w--------------------------------------------------~~~~~~~~~~~~~~~~~~-~gG~~ 235 (253)
T cd06545 207 FYGYGF--------------------------------------------------YYNGIPTIRNKVAFAKQN-YGGVM 235 (253)
T ss_pred Cccccc--------------------------------------------------cCCCHHHHHHHHHHHHHh-cCeEE
Confidence 999998 356667899999999999 9 999
Q ss_pred EEEcCCCCchhhhc
Q 014001 418 IWEIGQGLDYFFDL 431 (432)
Q Consensus 418 iW~Lg~d~d~f~dl 431 (432)
+|++++|...-.+|
T Consensus 236 ~w~~~~d~~~~~~l 249 (253)
T cd06545 236 IWELSQDASGENSL 249 (253)
T ss_pred EEeccCCCCCCcch
Confidence 99999998543344
No 17
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=99.98 E-value=2.7e-31 Score=248.35 Aligned_cols=201 Identities=23% Similarity=0.311 Sum_probs=162.7
Q ss_pred EEEEEcCCCCCCch-hhhhcCCCCcEEEEEEEEeecCCeEEE-ecCCCCCChHHHHHHHh--CCCcEEeEEeeccCc--h
Q 014001 107 VLAYITPWNSKGYE-LAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFP--K 180 (432)
Q Consensus 107 vlgY~~~w~~~gy~-~~~~~~~~lT~isp~w~~i~~~g~~~~-~~g~~d~d~~~l~~~~~--~~~kv~P~v~~~g~~--~ 180 (432)
++||+.+|+..... ..+.+.++||||+|.|+.++++|.... .....+....+++.+++ +++||+|+| +||. .
T Consensus 1 vv~y~~~w~~~~~~~~~~~~~~~~thvi~~f~~v~~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~kv~~si--gg~~~~~ 78 (210)
T cd00598 1 VICYYDGWSSGRGPDPTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEEPLKGALEELASKKPGLKVLISI--GGWTDSS 78 (210)
T ss_pred CEEEEccccccCCCChhhCCcccCCEEEEeeEEECCCCCEecccCcccHHHHHHHHHHHHhCCCCEEEEEE--cCCCCCC
Confidence 58999999876543 567788999999999999999987642 11122233567777776 489999654 7664 2
Q ss_pred --hhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEE
Q 014001 181 --ELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLV 258 (432)
Q Consensus 181 --~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~ls 258 (432)
.++++++.|++|++++++++++|+|||||||||. +.....+++++|+.||++||++|++ .++.|+
T Consensus 79 ~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~-----~~~~~~~~~~~~~~ll~~lr~~l~~--------~~~~ls 145 (210)
T cd00598 79 PFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEY-----PGAADNSDRENFITLLRELRSALGA--------ANYLLT 145 (210)
T ss_pred CchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeC-----CCCcCccHHHHHHHHHHHHHHHhcc--------cCcEEE
Confidence 4789999999999999999999999999999753 2211113689999999999999996 378999
Q ss_pred EEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCCCCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCeEEEeec
Q 014001 259 YVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGIN 338 (432)
Q Consensus 259 vavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~aPl~wv~~~l~~~~~~~~~~~~ip~~KivlGip 338 (432)
+++|+.... ....++++++++++|++++|||| |+||+|
T Consensus 146 ~a~~~~~~~-----~~~~~~~~~l~~~vD~v~vm~Yd-------------------------------------l~~g~~ 183 (210)
T cd00598 146 IAVPASYFD-----LGYAYDVPAIGDYVDFVNVMTYD-------------------------------------LVLGVP 183 (210)
T ss_pred EEecCChHH-----hhccCCHHHHHhhCCEEEEeeec-------------------------------------ccccch
Confidence 999986321 11148999999999999999999 788999
Q ss_pred ccccccccCCCCCCCccCHHHHHHHHHhCCCceEeecCCCceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHcCC-EEE
Q 014001 339 FYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVFYPSLISISMRLEEAKLWGT-GIA 417 (432)
Q Consensus 339 fYG~~w~~~~~~~~~~i~~~~~~~l~~~~~~~~~wD~~~~~~y~~y~d~~g~~~~V~ydd~~Si~~K~~la~~~gl-Gi~ 417 (432)
+| |++.|+++++++++ ||+
T Consensus 184 ~~------------------------------------------------------------s~~~k~~~~~~~~~gGv~ 203 (210)
T cd00598 184 FY------------------------------------------------------------SLGAKAKYAKQKGLGGVM 203 (210)
T ss_pred hh------------------------------------------------------------hHHHHHHHHHHcCCceEE
Confidence 99 99999999999999 999
Q ss_pred EEEcCCC
Q 014001 418 IWEIGQG 424 (432)
Q Consensus 418 iW~Lg~d 424 (432)
+|++++|
T Consensus 204 ~w~~~~d 210 (210)
T cd00598 204 IWELDQD 210 (210)
T ss_pred EEeccCC
Confidence 9999986
No 18
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=99.88 E-value=2.1e-21 Score=187.48 Aligned_cols=196 Identities=12% Similarity=0.124 Sum_probs=136.7
Q ss_pred cEEEEEcCCC--CCCchh----hhhcCCCCcEEEEEEEEeecCCeEEEecCCCCCC----hHHHH---HHHhCCCcEEeE
Q 014001 106 PVLAYITPWN--SKGYEL----AKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNAD----AGWLL---ELRKGDALVLPR 172 (432)
Q Consensus 106 ~vlgY~~~w~--~~gy~~----~~~~~~~lT~isp~w~~i~~~g~~~~~~g~~d~d----~~~l~---~~~~~~~kv~P~ 172 (432)
+++||++.|. ...+.. ...+..+||||.+.++.++.+|++.. .+ +..+ ..... .++++++||+
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G~l~~-~d-~~~~~~~~~~~~~~i~~~~~~g~KVl-- 76 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDGNIHL-ND-HPPDHPRFTTLWTELAILQSSGVKVM-- 76 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCCeEEE-CC-CCCCcchhhHHHHHHHHHHhCCCEEE--
Confidence 4789999993 232222 24467899999999999999987542 22 1111 13333 3455789999
Q ss_pred EeeccCc----hhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccc
Q 014001 173 VVLEAFP----KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSV 248 (432)
Q Consensus 173 v~~~g~~----~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~ 248 (432)
+++|||. +.+.++++.|++|++++++++++|+|||||||||. + .+.++|..|+++||++|++
T Consensus 77 lSiGG~~~~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~-----p-----~~~~~~~~ll~~Lr~~~~~---- 142 (256)
T cd06546 77 GMLGGAAPGSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEE-----P-----MSLDGIIRLIDRLRSDFGP---- 142 (256)
T ss_pred EEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeec-----C-----CCHhHHHHHHHHHHHHhCC----
Confidence 8889985 34567899999999999999999999999999752 2 2456899999999999964
Q ss_pred cccccceEEEEEECCCCCCCCCCCCCCCCCHHHHhc----cccEEEEeeccCCCCCCCCCCCCchhHHHHHHHHhcCCCC
Q 014001 249 RNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSD----AVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGI 324 (432)
Q Consensus 249 ~~~k~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~----~vD~v~lMtYD~~~~~~pgp~aPl~wv~~~l~~~~~~~~~ 324 (432)
++.|+++.++..-. ........+|+..+.+ ++|++++|.||.++.. . .+-.|.. ++.
T Consensus 143 -----~~~lT~Ap~~~~~~-~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~-~---~~~~~~~----~~~----- 203 (256)
T cd06546 143 -----DFIITLAPVASALT-GGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSM-S---SPSDYDA----IVA----- 203 (256)
T ss_pred -----CcEEEECCcccccc-CCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCc-c---CHHHHHH----HHH-----
Confidence 56666644332100 0112455678888764 9999999999976431 1 1223322 222
Q ss_pred CCCCCCCeEEEeecc
Q 014001 325 GTRSLARKIFLGINF 339 (432)
Q Consensus 325 ~~~ip~~KivlGipf 339 (432)
.+.|++||++|+|.
T Consensus 204 -~~~~~~Kv~iGlpa 217 (256)
T cd06546 204 -QGWDPERIVIGLLT 217 (256)
T ss_pred -cCCCcccEEEEEec
Confidence 46899999999995
No 19
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.88 E-value=1.1e-20 Score=187.71 Aligned_cols=241 Identities=17% Similarity=0.195 Sum_probs=149.1
Q ss_pred ccEEEEEcCCCCCC--ch-hhhhcCCCCcEEEEEEEEeecCCeEE-Eec---CCCCC-ChH---HHHHHHhCCCcEEeEE
Q 014001 105 YPVLAYITPWNSKG--YE-LAKMFNSKFTHLSPVWYDLKSQGTSL-ILE---GRHNA-DAG---WLLELRKGDALVLPRV 173 (432)
Q Consensus 105 ~~vlgY~~~w~~~g--y~-~~~~~~~~lT~isp~w~~i~~~g~~~-~~~---g~~d~-d~~---~l~~~~~~~~kv~P~v 173 (432)
++++||++.|+... .. ..+...+.+|||.+.+..+..++... ... +.... ... -++.+|++++||+ +
T Consensus 1 k~~vgY~~~w~~~~~~~~~~~~~~~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~G~KVl--l 78 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGRQDLDDVPSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQAKGKKVL--I 78 (312)
T ss_pred CeEEEecCcccCCCCCCCCCcccCCCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHHCCCEEE--E
Confidence 36899999997532 11 23444589999999999998876432 210 11111 123 3444566789999 6
Q ss_pred eeccCc-hhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccc
Q 014001 174 VLEAFP-KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRK 252 (432)
Q Consensus 174 ~~~g~~-~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k 252 (432)
++|||. +..+.+++.|++|++++++++++|+|||||||||.+.. .. ..++++++|+.||++||++|++
T Consensus 79 SiGG~~~~~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~--~~-~~~~~~~~~~~~lk~lr~~~~~-------- 147 (312)
T cd02871 79 SIGGANGHVDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSN--PL-NATPVITNLISALKQLKDHYGP-------- 147 (312)
T ss_pred EEeCCCCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCc--cC-CcHHHHHHHHHHHHHHHHHcCC--------
Confidence 789986 34588999999999999999999999999999764211 00 1357899999999999999974
Q ss_pred cceEEEEEECCCCCCCC---CCCCCCCC--CHHHHhccccEEEEeeccCCCC-CCCCCCC---CchhHHHHHHHHhcCCC
Q 014001 253 QHLQLVYVIGPPHSEKF---QPHDFGPV--DLQSLSDAVDGFSLMTYDFSGP-HNPGPNA---PLKWISFTLQLLLGSPG 323 (432)
Q Consensus 253 ~~~~lsvavpp~~~~~~---~~~~~~~~--d~~~l~~~vD~v~lMtYD~~~~-~~pgp~a---Pl~wv~~~l~~~~~~~~ 323 (432)
++.||++...+..... .....+.| ..+++..++|++++|.||.++. +..+... .........+.+.+...
T Consensus 148 -~~~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (312)
T cd02871 148 -NFILTMAPETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMGGCDGQSYSQGTADFLVALADMLLTGFP 226 (312)
T ss_pred -CeEEEECCCcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCcccccccCCccchhHHHHHHHHHHHcCCC
Confidence 6778776332211000 00011223 3678889999999999998753 1111111 11111111122221100
Q ss_pred -----CCCCCCCCeEEEeecccccccccCCCCCCCccCHHHHHHHHH
Q 014001 324 -----IGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQ 365 (432)
Q Consensus 324 -----~~~~ip~~KivlGipfYG~~w~~~~~~~~~~i~~~~~~~l~~ 365 (432)
...++|++||+||+|..-- ..+++.++..+..+.+.
T Consensus 227 ~~~~~~~~~~p~~Kv~iG~pa~~~------aa~~gyv~~~~l~~~i~ 267 (312)
T cd02871 227 IAGNDRFPPLPADKVVIGLPASPS------AAGGGYVSPSEVIKALD 267 (312)
T ss_pred ccCCcccccCChhhEEEeccCCCC------ccCCCccCHHHHHHHHH
Confidence 0024899999999998522 11245566665544443
No 20
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=99.88 E-value=2e-21 Score=186.82 Aligned_cols=192 Identities=14% Similarity=0.113 Sum_probs=133.4
Q ss_pred hhhhhcCCC--CcEEEEEEE-Eeec-----CCeEEEecCCCCCChHHHHHHHh--CCCcEEeEEeeccCch---hhcCCH
Q 014001 120 ELAKMFNSK--FTHLSPVWY-DLKS-----QGTSLILEGRHNADAGWLLELRK--GDALVLPRVVLEAFPK---ELLRKK 186 (432)
Q Consensus 120 ~~~~~~~~~--lT~isp~w~-~i~~-----~g~~~~~~g~~d~d~~~l~~~~~--~~~kv~P~v~~~g~~~---~~l~~~ 186 (432)
...+.+..+ ||||.+.+. ..+. +|..............-+..+|+ +++||+ +++|||.. .+..++
T Consensus 14 ~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~p~lKvl--lSiGG~~~~~~~~~~~~ 91 (253)
T cd06544 14 TFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPYWDTENLTPEAVKSIKAQHPNVKVV--ISIGGRGVQNNPTPFDP 91 (253)
T ss_pred cccccCCCCCeeEEEEEEeeeecccccCCCCCccccccCccccCHHHHHHHHHhCCCcEEE--EEeCCCCCCCCccccCc
Confidence 344556666 999999988 3333 22221111111112345666766 678999 88899962 345455
Q ss_pred HH----HHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEEC
Q 014001 187 KL----RDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIG 262 (432)
Q Consensus 187 ~~----r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavp 262 (432)
.. |++|++++++++++|||||||||||. .+.++++|+.||++|+++|++ +++++.++++
T Consensus 92 ~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~---------~~~d~~~f~~ll~~l~~~l~~--------~~~lt~a~va 154 (253)
T cd06544 92 SNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEH---------FPADPDTFVECIGQLITELKN--------NGVIKVASIA 154 (253)
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCceeeeccc---------CCcCHHHHHHHHHHHHHHhhh--------cCCeEEEEec
Confidence 44 45568999999999999999999742 245789999999999999987 3566666777
Q ss_pred CCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCCCCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCeEEEeeccccc
Q 014001 263 PPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGN 342 (432)
Q Consensus 263 p~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~aPl~wv~~~l~~~~~~~~~~~~ip~~KivlGipfYG~ 342 (432)
|.... . ..+.++.+.+++|++.+|+|||++.+. |..+-.+++ ..+.+. .+.|++||++|+|.++.
T Consensus 155 p~~~~-----~-~~~y~~~~~~~~d~id~~~~qfy~~~~--~~~~~~~~~-~~~~~~------~~~p~~Kv~lGl~a~~~ 219 (253)
T cd06544 155 PSEDA-----E-QSHYLALYNAYGDYIDYVNYQFYNYGV--PTTVAKYVE-FYDEVA------NNYPGKKVLASFSTDGE 219 (253)
T ss_pred CCccc-----c-ccccHHHHHHhhCceeEEEhhhhCCCC--CCCHHHHHH-HHHHHH------hCCCcccEEEEEecCCC
Confidence 75321 1 345588899999999999999987633 334444443 334444 57899999999999998
Q ss_pred ccc
Q 014001 343 DFV 345 (432)
Q Consensus 343 ~w~ 345 (432)
.|.
T Consensus 220 ~~~ 222 (253)
T cd06544 220 DGA 222 (253)
T ss_pred ccC
Confidence 874
No 21
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.82 E-value=4.5e-19 Score=171.27 Aligned_cols=200 Identities=12% Similarity=0.041 Sum_probs=136.3
Q ss_pred cEEEEEcCCCCCC---chhhhhcCCCCcEEEEEEEEeecCCeEEEecCCCCCChHHHHHHHhCCCcEEeEEeeccCc--h
Q 014001 106 PVLAYITPWNSKG---YELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRKGDALVLPRVVLEAFP--K 180 (432)
Q Consensus 106 ~vlgY~~~w~~~g---y~~~~~~~~~lT~isp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~~~~kv~P~v~~~g~~--~ 180 (432)
.++||+-.|...+ ......-.+.+++|+.+...++.++... +....+.....+..++++|+||+ ++++||. .
T Consensus 2 ~~~~y~~~~~~~~~~~~~~l~~~pds~D~v~lf~~~~~~~~~~~-~~~~~~~~~~~i~~l~~kG~KVl--~sigg~~~~~ 78 (255)
T cd06542 2 ISFGYFEVWDDKGASLQESLLNLPDSVDMVSLFAANINLDAATA-VQFLLTNKETYIRPLQAKGTKVL--LSILGNHLGA 78 (255)
T ss_pred eEEEEEEecCCcCcccccccccCCCcceEEEEcccccCcccccc-hhhhhHHHHHHHHHHhhCCCEEE--EEECCCCCCC
Confidence 4689999997432 1223334577899987544444332100 00001123456666777899999 6677775 2
Q ss_pred h--hcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEE
Q 014001 181 E--LLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLV 258 (432)
Q Consensus 181 ~--~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~ls 258 (432)
. ...+++.|++|+++|+++|++|||||||||||.+.. ......+.++++|..||++||++|++ .+++|+
T Consensus 79 ~~~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~-~~~~~~~~~~~~~~~lv~~Lr~~~~~--------~~kllt 149 (255)
T cd06542 79 GFANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGY-GKNGTSQPSNEAFVRLIKELRKYMGP--------TDKLLT 149 (255)
T ss_pred CccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeeccc-CCCCCCcchHHHHHHHHHHHHHHhCc--------CCcEEE
Confidence 2 467889999999999999999999999999764221 00000245889999999999999985 368899
Q ss_pred EEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCCCCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCeEEEeec
Q 014001 259 YVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGIN 338 (432)
Q Consensus 259 vavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~aPl~wv~~~l~~~~~~~~~~~~ip~~KivlGip 338 (432)
++.+|... .. +.+++++++||+++|+||-+.... +. ++... ..++|++|+++|++
T Consensus 150 ~~~~~~~~------~~---~~~~~~~~vDyv~~~~y~~~~~~~-~~------------~~~~~---~~g~~~~k~i~~~~ 204 (255)
T cd06542 150 IDGYGQAL------SN---DGEEVSPYVDYVIYQYYGSSSSST-QR------------NWNTN---SPKIPPEKMVYTES 204 (255)
T ss_pred EEecCCch------hc---CHHHHHHhCCEEEeeccCCCCccC-Cc------------ccccc---cCCCCHHHceeeee
Confidence 99887521 11 789999999999999999754321 11 11111 16899999999999
Q ss_pred cccc
Q 014001 339 FYGN 342 (432)
Q Consensus 339 fYG~ 342 (432)
|++.
T Consensus 205 ~~~~ 208 (255)
T cd06542 205 FEEE 208 (255)
T ss_pred eecc
Confidence 9964
No 22
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.73 E-value=1.6e-16 Score=155.97 Aligned_cols=152 Identities=11% Similarity=0.105 Sum_probs=111.6
Q ss_pred CCCCcEEEEEEEEeecCCeEEEecCCCCCC-----hHHHHHHHhCCCcEEeEEeeccCch-hhcCCHHHHHHHHHHHHHH
Q 014001 126 NSKFTHLSPVWYDLKSQGTSLILEGRHNAD-----AGWLLELRKGDALVLPRVVLEAFPK-ELLRKKKLRDKAIDLILTE 199 (432)
Q Consensus 126 ~~~lT~isp~w~~i~~~g~~~~~~g~~d~d-----~~~l~~~~~~~~kv~P~v~~~g~~~-~~l~~~~~r~~~i~~iv~~ 199 (432)
...++||...|+....+++. ...|....+ ..-+..+|+.|.||+ |++|||.. .+..+...|++|++++.++
T Consensus 23 ~~g~~~v~lAFi~~~~~~~~-~w~g~~~~~~~~~~~~~i~~lk~~G~kVi--iS~GG~~g~~~~~~~~~~~~~~~a~~~~ 99 (294)
T cd06543 23 ATGVKAFTLAFIVASGGCKP-AWGGSYPLDQGGWIKSDIAALRAAGGDVI--VSFGGASGTPLATSCTSADQLAAAYQKV 99 (294)
T ss_pred HcCCCEEEEEEEEcCCCCcc-cCCCCCCcccchhHHHHHHHHHHcCCeEE--EEecCCCCCccccCcccHHHHHHHHHHH
Confidence 46899999999988755553 222322222 233556677778898 88999974 4556788999999999999
Q ss_pred HHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCCCCCCH
Q 014001 200 CKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDL 279 (432)
Q Consensus 200 l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~~~d~ 279 (432)
+.+|+|||||||||. +...+....+++.+.|++|+++++ ++.|++++|.... +....++++
T Consensus 100 i~~y~~dgiDfDiE~-----~~~~d~~~~~~~~~al~~Lq~~~p----------~l~vs~Tlp~~p~----gl~~~g~~~ 160 (294)
T cd06543 100 IDAYGLTHLDFDIEG-----GALTDTAAIDRRAQALALLQKEYP----------DLKISFTLPVLPT----GLTPDGLNV 160 (294)
T ss_pred HHHhCCCeEEEeccC-----CccccchhHHHHHHHHHHHHHHCC----------CcEEEEecCCCCC----CCChhHHHH
Confidence 999999999999763 222223345789999999998874 5788999886421 122245678
Q ss_pred HHHhc----cccEEEEeeccCCCC
Q 014001 280 QSLSD----AVDGFSLMTYDFSGP 299 (432)
Q Consensus 280 ~~l~~----~vD~v~lMtYD~~~~ 299 (432)
-+.++ .+|+||||||||++.
T Consensus 161 l~~a~~~Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 161 LEAAAANGVDLDTVNIMTMDYGSS 184 (294)
T ss_pred HHHHHHcCCCcceeeeeeecCCCC
Confidence 88888 899999999999864
No 23
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.55 E-value=1.7e-13 Score=133.87 Aligned_cols=149 Identities=13% Similarity=0.071 Sum_probs=98.3
Q ss_pred HHHHHHHhCCCcEEeEEeeccCc-hhhcCCHHHHHHHHHHHHHHHH------------hcCcCeEEeecccccccCCCCC
Q 014001 157 GWLLELRKGDALVLPRVVLEAFP-KELLRKKKLRDKAIDLILTECK------------EMEYDGIVLESWSTWTAYGILH 223 (432)
Q Consensus 157 ~~l~~~~~~~~kv~P~v~~~g~~-~~~l~~~~~r~~~i~~iv~~l~------------~~gfDGIdiD~w~~~~~~e~~~ 223 (432)
.-|+.++++++||+ +++|||. +.-+.+++.|++|+++|.++.. +++|||||||||. +.
T Consensus 63 ~dI~~cq~~G~KVl--LSIGG~~~~~~~~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~-----~~-- 133 (280)
T cd02877 63 ADIKHCQSKGKKVL--LSIGGAGGSYSLSSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEH-----GS-- 133 (280)
T ss_pred HHHHHHHHCCCEEE--EEccCCCCCcCCCCHHHHHHHHHHHHHHhCCccccccccccccccccceEEeccc-----CC--
Confidence 34566666899999 8889986 3445889999999999988762 5679999999752 21
Q ss_pred CHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCCCCCCHHHHhc-cccEEEEeeccCCCCC-C
Q 014001 224 DPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSD-AVDGFSLMTYDFSGPH-N 301 (432)
Q Consensus 224 ~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~-~vD~v~lMtYD~~~~~-~ 301 (432)
. .+|..|+++||+.+.+.. .+++.||+|.+.+. .+.+.-..|.. ++|+++||.||...-. .
T Consensus 134 ~----~~~~~l~~~LR~~~~~~~-----~~~~~LTaAPq~~~--------~d~~~~~~i~~~~~D~i~vqfYn~~~c~~~ 196 (280)
T cd02877 134 P----ENYDALAKRLRSLFASDP-----SKKYYLTAAPQCPY--------PDASLGDAIATGLFDFIFVQFYNNPCCSYA 196 (280)
T ss_pred c----cCHHHHHHHHHHHhhccc-----CCceEEEeccccCC--------cchhHHHHHccCccCEEEEEEecCcccccc
Confidence 1 579999999999997521 13577776633221 12244456664 9999999999964321 1
Q ss_pred CCCCCCchhHHHHHHHHhcCCCCCCCCC---CCeEEEeeccc
Q 014001 302 PGPNAPLKWISFTLQLLLGSPGIGTRSL---ARKIFLGINFY 340 (432)
Q Consensus 302 pgp~aPl~wv~~~l~~~~~~~~~~~~ip---~~KivlGipfY 340 (432)
++-.+. .....+.+.. .++ ..||+||+|..
T Consensus 197 ~~~~~~---~~~~~~~w~~------~~~~~~~~kv~lGlpas 229 (280)
T cd02877 197 SGNASG---FNFNWDTWTS------WAKATSNAKVFLGLPAS 229 (280)
T ss_pred ccccch---hhhHHHHHHH------hcccCCCceEEEecccC
Confidence 111111 1122233331 233 48999999976
No 24
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.95 E-value=1.1e-08 Score=102.67 Aligned_cols=160 Identities=18% Similarity=0.256 Sum_probs=109.0
Q ss_pred CChHHHHHHHhCCCcEEeEEeeccCc-----hhhcCC-HHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCC-CHH
Q 014001 154 ADAGWLLELRKGDALVLPRVVLEAFP-----KELLRK-KKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILH-DPE 226 (432)
Q Consensus 154 ~d~~~l~~~~~~~~kv~P~v~~~g~~-----~~~l~~-~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~-~~~ 226 (432)
++.+|+..+|++|+||++.|.++.-. +.+|.+ ++.+.++|+.|+++|+.|||||+.||+| ... .++
T Consensus 47 Pp~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E-------~~~~~~~ 119 (339)
T cd06547 47 PPADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIE-------TELGDAE 119 (339)
T ss_pred CCcHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeee-------ccCCcHH
Confidence 46899999999999999988654311 478888 9999999999999999999999999964 333 578
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCC---CCCCCHHHHhccccEEEEeeccCCCCCCCC
Q 014001 227 LRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHD---FGPVDLQSLSDAVDGFSLMTYDFSGPHNPG 303 (432)
Q Consensus 227 d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~---~~~~d~~~l~~~vD~v~lMtYD~~~~~~pg 303 (432)
+++++.+|+++|++++++.. .+..++- .-.....+.-.| ...++..-+ +.+|.+.+ -|.+..
T Consensus 120 ~~~~l~~F~~~L~~~~~~~~------~~~~v~W--YDs~t~~G~l~wQn~Ln~~N~~ff-~~~D~~Fl-NY~W~~----- 184 (339)
T cd06547 120 KAKRLIAFLRYLKAKLHENV------PGSLVIW--YDSMTEDGKLSWQNELNSKNKPFF-DVCDGIFL-NYWWTE----- 184 (339)
T ss_pred HHHHHHHHHHHHHHHHhhcC------CCcEEEE--EecCCCCCccchhhhhhHHHHHHH-hhhcceeE-ecCCCc-----
Confidence 99999999999999999742 2333321 100001111011 122334444 66775543 344332
Q ss_pred CCCCchhHHHHHHHHhcCCCCCCCCCCCeEEEeecccccccc
Q 014001 304 PNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFV 345 (432)
Q Consensus 304 p~aPl~wv~~~l~~~~~~~~~~~~ip~~KivlGipfYG~~w~ 345 (432)
..++..++.+.. .+..+.+|.+||-..|+...
T Consensus 185 -----~~l~~s~~~a~~-----~g~~~~dvy~GiDv~grg~~ 216 (339)
T cd06547 185 -----ESLERSVQLAEG-----LGRSPYDVYVGVDVWGRGTK 216 (339)
T ss_pred -----chHHHHHHHHHH-----cCCCHhHEEEEEEEEcCCcc
Confidence 124444445443 56788999999999998865
No 25
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=98.85 E-value=3.8e-08 Score=92.13 Aligned_cols=217 Identities=14% Similarity=0.128 Sum_probs=118.8
Q ss_pred ccEEEEEcCCCCC---Cchh---hh---hcCCCCcEEEEEEEEeecCCeEEEecCCCCCChHHHHHHHh---CCCcEEeE
Q 014001 105 YPVLAYITPWNSK---GYEL---AK---MFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRK---GDALVLPR 172 (432)
Q Consensus 105 ~~vlgY~~~w~~~---gy~~---~~---~~~~~lT~isp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~---~~~kv~P~ 172 (432)
+..+||.-.|-+. +|.. +. ...++=..+.-+.|... .|++.+.....+.|.++=.++.+ .|.-++
T Consensus 26 KvLvGyWHnw~sgaaDgyq~gs~adial~d~~~~ynvv~V~Fmk~-~g~iptf~P~~~~daeFr~~v~aLnaeGkavl-- 102 (332)
T COG3469 26 KVLVGYWHNWKSGAADGYQQGSSADIALADTPRNYNVVTVSFMKG-AGDIPTFKPYNDPDAEFRAQVGALNAEGKAVL-- 102 (332)
T ss_pred ceEEEeeecccccccccccccceeeeEeccCCcccceEEEEEeec-CCCCcccCcCCCCHHHHHHHHHHhhccCcEEE--
Confidence 4788999999643 3331 11 11122122333444333 34554443333455666555544 344355
Q ss_pred EeeccCchh-hcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhcccccccc
Q 014001 173 VVLEAFPKE-LLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNR 251 (432)
Q Consensus 173 v~~~g~~~~-~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~ 251 (432)
+++||-... -|.. ..-+.|+++|+.++++|||||+|||.|. .+ .....+..- .-..+|.+++.-+..
T Consensus 103 lsLGGAdghIeL~~-~qE~~fv~eiirlietyGFDGLDiDLEq-~a-i~~~dnq~v---~p~alk~vk~hyk~~------ 170 (332)
T COG3469 103 LSLGGADGHIELKA-GQEQAFVNEIIRLIETYGFDGLDIDLEQ-SA-ILAADNQTV---IPAALKAVKDHYKNQ------ 170 (332)
T ss_pred EEccCccceEEecc-chHHHHHHHHHHHHHHhCCCccccchhh-hh-hhhcCCeee---hHHHHHHHHHHHHhc------
Confidence 778887632 2322 2267899999999999999999999753 11 010001111 223555555555542
Q ss_pred ccceEEEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCCC--CCCCCCCchhHHHHH----HHHhcCC---
Q 014001 252 KQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPH--NPGPNAPLKWISFTL----QLLLGSP--- 322 (432)
Q Consensus 252 k~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~--~pgp~aPl~wv~~~l----~~~~~~~--- 322 (432)
+.-+.++++|..+--+....+.+ -+.+|..+.|++...-|.-.|.+ ..-.++|+......+ -|++..+
T Consensus 171 --Gk~f~itMAPEfPYl~~~gaY~p-yin~l~~~yD~i~pQlYNqGGdg~w~~~~nawi~q~nd~~kesfly~~~~slan 247 (332)
T COG3469 171 --GKNFFITMAPEFPYLQGWGAYIP-YINELRDYYDFIAPQLYNQGGDGNWVTESNAWIAQNNDMVKESFLYYLTFSLAN 247 (332)
T ss_pred --CCceEEEecCCCceecCCcccch-HHHHHhhHHhhhhHHHhcCCCCCCCcCccccccccccHHHHHhHHHHhhhhhhc
Confidence 44455667775433222222332 26788999999999999887653 223344444332222 2222111
Q ss_pred -CC-CCCCCCCeEEEeecc
Q 014001 323 -GI-GTRSLARKIFLGINF 339 (432)
Q Consensus 323 -~~-~~~ip~~KivlGipf 339 (432)
.+ -..+|.+|+++|+|.
T Consensus 248 Gtr~f~~ipa~k~aiGLPs 266 (332)
T COG3469 248 GTRGFEKIPADKFAIGLPS 266 (332)
T ss_pred CcccceecccceeEEecCC
Confidence 11 135899999999995
No 26
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=97.90 E-value=2.7e-05 Score=77.47 Aligned_cols=159 Identities=18% Similarity=0.307 Sum_probs=93.9
Q ss_pred CChHHHHHHHhCCCcEEeEEeeccCc-----hhhcC-CHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHH
Q 014001 154 ADAGWLLELRKGDALVLPRVVLEAFP-----KELLR-KKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPEL 227 (432)
Q Consensus 154 ~d~~~l~~~~~~~~kv~P~v~~~g~~-----~~~l~-~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d 227 (432)
+..+|+..+|++|++|+-.|.++.-+ ..||. ++.....+++.|+++++.|||||.-|++|. .. ..+.+
T Consensus 43 P~~~widaAHrnGV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~-----~~-~~~~~ 116 (311)
T PF03644_consen 43 PPAGWIDAAHRNGVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIET-----PL-SGPED 116 (311)
T ss_dssp --HHHHHHHHHTT--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEE-----SS-TTGGG
T ss_pred CCchhHHHHHhcCceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecc-----cC-CchhH
Confidence 45789999999999998777663222 47887 788889999999999999999999999764 21 12267
Q ss_pred HHHHHHHHHHHHHHhhccccccccccceEEEE--EECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCCCCCCCC
Q 014001 228 RNMALEFIKQLGNALHSVNSVRNRKQHLQLVY--VIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPN 305 (432)
Q Consensus 228 ~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsv--avpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~ 305 (432)
.+++..|+++|++++++ . .+..++- ++.....-.-++. ....+. ...+.+|.+.+ +|.+. +
T Consensus 117 ~~~l~~F~~~l~~~~~~-~------~~~~v~WYDs~t~~G~l~~qn~-Ln~~N~-~f~~~~d~iFl---NY~W~--~--- 179 (311)
T PF03644_consen 117 AENLIDFLKYLRKEAHE-N------PGSEVIWYDSVTNSGRLSWQNE-LNDKNK-PFFDVCDGIFL---NYNWN--P--- 179 (311)
T ss_dssp HHHHHHHHHHHHHHHHH-T-------T-EEEEES-B-SSSSB---SS-S-TTTG-GGBES-SEEEE----S--S--H---
T ss_pred HHHHHHHHHHHHHHhhc-C------CCcEEEEeecCCcCCccchHHH-HHhhCc-chhhhcceeeE---ecCCC--c---
Confidence 88999999999999996 2 2333322 1221100000111 112221 12567777665 34442 1
Q ss_pred CCchhHHHHHHHHhcCCCCCCCCCCCeEEEeecccccc
Q 014001 306 APLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGND 343 (432)
Q Consensus 306 aPl~wv~~~l~~~~~~~~~~~~ip~~KivlGipfYG~~ 343 (432)
.-++.+++.+.. .+.++.+|.+||-..|+.
T Consensus 180 ---~~l~~s~~~A~~-----~~~~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 180 ---DSLESSVANAKS-----RGRDPYDVYAGIDVFGRG 209 (311)
T ss_dssp ---HHHHHHHHHHHH-----HTS-GGGEEEEEEHHHHT
T ss_pred ---ccHHHHHHHHHH-----cCCCHHHEEEEEEEEcCC
Confidence 226677777765 567889999999999998
No 27
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.84 E-value=0.00011 Score=73.14 Aligned_cols=141 Identities=16% Similarity=0.175 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcCeEEee-cccccc--cCC--------------CCCCHHH-------HHHHHHHHHHHH
Q 014001 184 RKKKLRDKAIDLILTECKEMEYDGIVLE-SWSTWT--AYG--------------ILHDPEL-------RNMALEFIKQLG 239 (432)
Q Consensus 184 ~~~~~r~~~i~~iv~~l~~~gfDGIdiD-~w~~~~--~~e--------------~~~~~~d-------~~~~~~fl~eL~ 239 (432)
..|+.|+-+++-+.+++++|.+|||+|| .-.+.. +|. ....++| |++-+.||++|+
T Consensus 134 ~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~ 213 (311)
T PF02638_consen 134 GHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIY 213 (311)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999 222111 111 1123455 788999999999
Q ss_pred HHhhccccccccccceEEEEEECCCCCCCCCCCCCCCCCHHHHh--ccccEEEEeeccCCCCCCCCCCCCchhHHHHHHH
Q 014001 240 NALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLS--DAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQL 317 (432)
Q Consensus 240 ~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~--~~vD~v~lMtYD~~~~~~pgp~aPl~wv~~~l~~ 317 (432)
+++++.+ +...++++..+... .....-..|...-. .++|++..|.|-..-.. ....++..+..
T Consensus 214 ~~ik~~k------P~v~~sisp~g~~~---~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~~~~------~~~~~~~~~~~ 278 (311)
T PF02638_consen 214 DAIKAIK------PWVKFSISPFGIWN---SAYDDYYQDWRNWLKEGYIDYIVPQIYWSDFSH------FTAPYEQLAKW 278 (311)
T ss_pred HHHHHhC------CCCeEEEEeecchh---hhhhheeccHHHHHhcCCccEEEeeecccccch------hHHHHHHHHHH
Confidence 9999863 56777776554321 00111234555443 67999999999542211 11235666666
Q ss_pred HhcCCCCCCCCCCCeEEEeecccccc
Q 014001 318 LLGSPGIGTRSLARKIFLGINFYGND 343 (432)
Q Consensus 318 ~~~~~~~~~~ip~~KivlGipfYG~~ 343 (432)
+.+. ..-..-+|.+|+.+|-..
T Consensus 279 w~~~----~~~~~v~ly~G~~~y~~~ 300 (311)
T PF02638_consen 279 WAKQ----VKPTNVHLYIGLALYKVG 300 (311)
T ss_pred HHHh----hcCCCceEEEccCcCCCC
Confidence 6642 112345899999999543
No 28
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=97.76 E-value=0.00031 Score=63.65 Aligned_cols=118 Identities=18% Similarity=0.194 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHHHHHh-cCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEECC
Q 014001 185 KKKLRDKAIDLILTECKE-MEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGP 263 (432)
Q Consensus 185 ~~~~r~~~i~~iv~~l~~-~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp 263 (432)
+++..++..+.+.+.-.. +...||.||+ .- .....+.|..|+++||++|.+ ++.||++.=|
T Consensus 22 ~~~~~~~i~~~l~~W~~~G~~v~giQIDf-------Da--~t~~L~~Y~~fL~~LR~~LP~---------~~~LSIT~L~ 83 (181)
T PF11340_consen 22 PEQVLARILQLLQRWQAAGNNVAGIQIDF-------DA--ATSRLPAYAQFLQQLRQRLPP---------DYRLSITALP 83 (181)
T ss_pred CHHHHHHHHHHHHHHHHcCCCceEEEEec-------Cc--cccchHHHHHHHHHHHHhCCC---------CceEeeEEeh
Confidence 455555555554444433 2579999994 43 345668899999999999996 6888887765
Q ss_pred CCCCCCCCCCCCCCC-HHHHhccccEEEEeeccCCCCCCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCeEEEeeccccc
Q 014001 264 PHSEKFQPHDFGPVD-LQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGN 342 (432)
Q Consensus 264 ~~~~~~~~~~~~~~d-~~~l~~~vD~v~lMtYD~~~~~~pgp~aPl~wv~~~l~~~~~~~~~~~~ip~~KivlGipfYG~ 342 (432)
. |-..-+ +..|...||.+++|+| .|. .-+...-.|+-.. +++. --.-+|+|-||
T Consensus 84 d--------W~~~~~~L~~L~~~VDE~VlQ~y--qGl---------~d~~~~~~yl~~l----~~l~-~PFriaLp~yG- 138 (181)
T PF11340_consen 84 D--------WLSSPDWLNALPGVVDELVLQVY--QGL---------FDPPNYARYLPRL----ARLT-LPFRIALPQYG- 138 (181)
T ss_pred h--------hhcCchhhhhHhhcCCeeEEEee--cCC---------CCHHHHHHHHHHH----hcCC-CCeEEecCcCC-
Confidence 3 333344 8899999999999999 121 1122233333322 2233 45789999999
Q ss_pred ccc
Q 014001 343 DFV 345 (432)
Q Consensus 343 ~w~ 345 (432)
.|.
T Consensus 139 e~e 141 (181)
T PF11340_consen 139 EWE 141 (181)
T ss_pred ccC
Confidence 554
No 29
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.67 E-value=0.0057 Score=60.81 Aligned_cols=138 Identities=17% Similarity=0.126 Sum_probs=91.2
Q ss_pred hHHHHHHHhCCCcEEeEEeecc----------Cc-------------hhhc---CCHHHHHHHHHHHHHHHHhcCcCeEE
Q 014001 156 AGWLLELRKGDALVLPRVVLEA----------FP-------------KELL---RKKKLRDKAIDLILTECKEMEYDGIV 209 (432)
Q Consensus 156 ~~~l~~~~~~~~kv~P~v~~~g----------~~-------------~~~l---~~~~~r~~~i~~iv~~l~~~gfDGId 209 (432)
+.+++.+|++|+-++-||+.-. |. .... .+++.++-.++ |.+.+.+.|||.|.
T Consensus 64 ~~l~~~l~e~gIY~IARIv~FkD~~la~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~-IA~Eaa~~GFdEIq 142 (316)
T PF13200_consen 64 KALVKKLKEHGIYPIARIVVFKDPVLAEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNID-IAKEAAKLGFDEIQ 142 (316)
T ss_pred HHHHHHHHHCCCEEEEEEEEecChHHhhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHH-HHHHHHHcCCCEEE
Confidence 4577888888887777775311 10 0112 24566776665 66677788999999
Q ss_pred eecccccc-------cCCCCCCHH-HHHHHHHHHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCCCCCCHHH
Q 014001 210 LESWSTWT-------AYGILHDPE-LRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQS 281 (432)
Q Consensus 210 iD~w~~~~-------~~e~~~~~~-d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~~~d~~~ 281 (432)
+|.-..+. .|......+ -.+..+.||+..+++|++ .+..+|+.|.+.... ......-+.+++.
T Consensus 143 fDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~--------~~v~vSaDVfG~~~~-~~~~~~iGQ~~~~ 213 (316)
T PF13200_consen 143 FDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHP--------YGVPVSADVFGYVAW-SPDDMGIGQDFEK 213 (316)
T ss_pred eeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhH--------cCCCEEEEecccccc-cCCCCCcCCCHHH
Confidence 99543111 011111122 236788999999999997 467899999875322 1123345789999
Q ss_pred HhccccEEEEeeccCCCC-CCCC
Q 014001 282 LSDAVDGFSLMTYDFSGP-HNPG 303 (432)
Q Consensus 282 l~~~vD~v~lMtYD~~~~-~~pg 303 (432)
|+++||++.-|-|==|+. +..|
T Consensus 214 ~a~~vD~IsPMiYPSh~~~g~~g 236 (316)
T PF13200_consen 214 IAEYVDYISPMIYPSHYGPGFFG 236 (316)
T ss_pred HhhhCCEEEecccccccCcccCC
Confidence 999999999999987754 3444
No 30
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=97.38 E-value=0.00057 Score=68.77 Aligned_cols=171 Identities=20% Similarity=0.347 Sum_probs=116.2
Q ss_pred CChHHHHHHHhCCCcEEeEEeeccCc------hhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHH
Q 014001 154 ADAGWLLELRKGDALVLPRVVLEAFP------KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPEL 227 (432)
Q Consensus 154 ~d~~~l~~~~~~~~kv~P~v~~~g~~------~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d 227 (432)
+..+|...+|++|++++-.+ +..|+ +++|++++.-+.-++.++++++-.||||--|++ |+..+...
T Consensus 112 PP~~wtn~AHrHGV~vlGTF-ItEw~eg~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNi-------En~i~~~~ 183 (526)
T KOG2331|consen 112 PPPGWTNTAHRHGVKVLGTF-ITEWDEGKATCKEFLATEESVEMTVERLVELARFFGFDGWLINI-------ENKIDLAK 183 (526)
T ss_pred CCCcccchhhhcCceeeeeE-EEEeccchhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEe-------eeccChhh
Confidence 45789999999999988765 44564 589999999999999999999999999999996 44446667
Q ss_pred HHHHHHHHHHHHHHhhccccccccccceEEEE---EECCCCCCCCCCCCCC--CCCHHHHhccccEEEEeeccCCCCCCC
Q 014001 228 RNMALEFIKQLGNALHSVNSVRNRKQHLQLVY---VIGPPHSEKFQPHDFG--PVDLQSLSDAVDGFSLMTYDFSGPHNP 302 (432)
Q Consensus 228 ~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsv---avpp~~~~~~~~~~~~--~~d~~~l~~~vD~v~lMtYD~~~~~~p 302 (432)
..++..|++.|.+++|... ..++.+-. ..-.. -.|-. ...-+..-++||.+ .|.|.|--..
T Consensus 184 i~~l~~F~~~Lt~~~~~~~-----p~~~ViWYDSV~~~G~------L~WQ~eLne~N~~Ffd~cdg~-~~NY~Wke~~-- 249 (526)
T KOG2331|consen 184 IPNLIQFVSHLTKVLHSSV-----PGGLVIWYDSVTDDGQ------LHWQNELNEMNRKFFDACDGI-FMNYNWKEKH-- 249 (526)
T ss_pred CccHHHHHHHHHHHHhhcC-----CCceEEEEeeeeecCe------eehhhhhhhhcchhhhhccee-eeecccccch--
Confidence 7889999999999999743 23444422 22211 11111 01112344678875 5777664221
Q ss_pred CCCCCchhHHHHHHHHhcCCCCCCCCCCCeEEEeecccccccccCCCCCCCccCHHHHHHHHHhCCC
Q 014001 303 GPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKP 369 (432)
Q Consensus 303 gp~aPl~wv~~~l~~~~~~~~~~~~ip~~KivlGipfYG~~w~~~~~~~~~~i~~~~~~~l~~~~~~ 369 (432)
.+...+. ++-.+..+.|||--+||.-. ++ ..-.+.++++++++.
T Consensus 250 --------l~rsa~~--------~~~~r~~v~~GiDVf~Rg~~------gg-f~~~~s~~L~k~~~~ 293 (526)
T KOG2331|consen 250 --------LERSAEQ--------AGDRRHRVFMGIDVFGRGCV------GG-FHCDQSLELIKKNGF 293 (526)
T ss_pred --------HHHHHHh--------hhhhhhceEEEeEEEecccc------cc-cchhHHHHHHHHcCc
Confidence 2222332 34568899999999998632 11 455567888888774
No 31
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=96.57 E-value=0.0022 Score=44.25 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=22.8
Q ss_pred eeccCCCChhHHHHhccccCCCCHHHHHHHcC
Q 014001 61 YSTRANRSATHMHQRGLVKTDVNYQEILTENS 92 (432)
Q Consensus 61 ~~~~~gdt~~~i~~r~lv~~~~~~~~il~~~~ 92 (432)
|+|++|||+++|+++ ++++.++|.+.|.
T Consensus 1 y~V~~gDtl~~IA~~----~~~~~~~l~~~N~ 28 (44)
T PF01476_consen 1 YTVQPGDTLWSIAKR----YGISVDELMELNP 28 (44)
T ss_dssp EEE-TT--HHHHHHH----TTS-HHHHHHHCC
T ss_pred CEECcCCcHHHHHhh----hhhhHhHHHHhcC
Confidence 789999999999999 9999999999993
No 32
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=96.33 E-value=0.0016 Score=54.16 Aligned_cols=36 Identities=6% Similarity=-0.049 Sum_probs=27.3
Q ss_pred eeeEeeccCCCChhHHHHhccccCCCC--------HHHHHHHcCCCCC
Q 014001 57 YCTKYSTRANRSATHMHQRGLVKTDVN--------YQEILTENSKVSE 96 (432)
Q Consensus 57 ~~~~~~~~~gdt~~~i~~r~lv~~~~~--------~~~il~~~~~~~~ 96 (432)
...+|+|++|||+|+|+++ ++++ ++.|.+.|...+.
T Consensus 35 ~~~~~tV~~GDTLW~IA~~----y~~~~~l~~~~~v~~I~~~N~l~~~ 78 (103)
T PRK14125 35 QYVEITVQEGDTLWALADQ----YAGKHHMAKNEFIEWVEDVNNLPSG 78 (103)
T ss_pred CcEEEEECCCCCHHHHHHH----hCCCcCCCHHHHHHHHHHhcCCCCC
Confidence 4678999999999999999 7654 4566666765543
No 33
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=96.27 E-value=0.044 Score=54.78 Aligned_cols=174 Identities=20% Similarity=0.176 Sum_probs=98.7
Q ss_pred HHHHHhCCCcEEeEEeeccCc-hhhcCCHHHHHHHHHHHHHHHHhc----------CcCeEEeecccccccCCCCCCHHH
Q 014001 159 LLELRKGDALVLPRVVLEAFP-KELLRKKKLRDKAIDLILTECKEM----------EYDGIVLESWSTWTAYGILHDPEL 227 (432)
Q Consensus 159 l~~~~~~~~kv~P~v~~~g~~-~~~l~~~~~r~~~i~~iv~~l~~~----------gfDGIdiD~w~~~~~~e~~~~~~d 227 (432)
|+..+..|+||+ +++||.. .-.+.+.+.-+.|++.+-+..-.- =.||+|+|+|. + .+
T Consensus 96 i~~CQS~GiKVl--LSLGG~~GnYs~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~-----g---~~-- 163 (568)
T KOG4701|consen 96 IQVCQSNGIKVL--LSLGGYNGNYSLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIEK-----G---TN-- 163 (568)
T ss_pred HHHHHhcCeEEE--EeccCcccceeeccchhHHHHHHHHHHHhcCCccccCcccchhccceeeeeec-----C---Cc--
Confidence 344455889999 7778875 467788888888988887765331 17999999752 1 22
Q ss_pred HHHHHHHHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCCCCCCHH-HHh-ccccEEEEeeccCCCC-CCCCC
Q 014001 228 RNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQ-SLS-DAVDGFSLMTYDFSGP-HNPGP 304 (432)
Q Consensus 228 ~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~~~d~~-~l~-~~vD~v~lMtYD~~~~-~~pgp 304 (432)
..|..|-+.|++.|... .+.+.|+.+=..+.+. .-+. .|. +-.||+.|.-|+-..= ...|.
T Consensus 164 -~~ysaLA~~L~~~Fa~~------~r~yYLsaAPQCP~PD---------~~~G~aL~~~~fDf~~IQFYNN~~CS~SsG~ 227 (568)
T KOG4701|consen 164 -TAYSALAKRLLEIFASD------PRRYYLSAAPQCPVPD---------HTLGKALSENSFDFLSIQFYNNSTCSGSSGS 227 (568)
T ss_pred -chHHHHHHHHHHHHccC------CceEEeccCCCCCCCc---------hhhhhhhhccccceEEEEeecCCCcccccCc
Confidence 34677889999998752 2456565443333221 1111 121 3469999999976321 11221
Q ss_pred CCCchhHHHHHHHHhcCCCCCCCCCCCe---EEEeecccccccccCCCCCCCccCHHHH----HHHHH---hCCCceEee
Q 014001 305 NAPLKWISFTLQLLLGSPGIGTRSLARK---IFLGINFYGNDFVLSEASGGGAITGREY----LNLLQ---KHKPALQWE 374 (432)
Q Consensus 305 ~aPl~wv~~~l~~~~~~~~~~~~ip~~K---ivlGipfYG~~w~~~~~~~~~~i~~~~~----~~l~~---~~~~~~~wD 374 (432)
.-.+ .+.=++|+. .+.++| ++||+|--.. ..|.+.|+.... +..++ .+|.-.-||
T Consensus 228 ~Q~~--fDsW~~ya~-------~~a~nKn~~lFLGLPg~~~------AAGSGYIsp~~Lt~~~l~~~a~S~~fGGv~LWd 292 (568)
T KOG4701|consen 228 RQST--FDAWVEYAE-------DSAYNKNTSLFLGLPGHQN------AAGSGYISPKNLTRDLLNYKANSTLFGGVTLWD 292 (568)
T ss_pred cccc--HHHHHHHHh-------hhcccccceEEeeccCCcc------cccCCccCchHHHHHHHHhhhhccccccEEEee
Confidence 1111 122233443 345666 9999995432 124566665432 22222 245556677
Q ss_pred c
Q 014001 375 K 375 (432)
Q Consensus 375 ~ 375 (432)
.
T Consensus 293 ~ 293 (568)
T KOG4701|consen 293 T 293 (568)
T ss_pred c
Confidence 4
No 34
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=95.21 E-value=0.21 Score=54.64 Aligned_cols=166 Identities=14% Similarity=0.165 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCC---------------------CHHH--------HHHHHHHH
Q 014001 185 KKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILH---------------------DPEL--------RNMALEFI 235 (432)
Q Consensus 185 ~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~---------------------~~~d--------~~~~~~fl 235 (432)
+|+.|+...+-..++++.+.||||-+|=.--+..||... +|+. .+.+..|-
T Consensus 439 ~pe~r~~i~~i~~dla~~~~~dGilf~Dd~~l~d~ed~s~~a~~~~~~~g~~~~~~~~~~~~~~~~~wt~~k~~~l~~f~ 518 (671)
T PRK14582 439 DDRVRAQVGMLYEDLAGHAAFDGILFHDDAVLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDFT 518 (671)
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEecccccccccccCCHHHHHHHHHcCCCcchhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 577777666666666777899999996111122233210 1111 13356899
Q ss_pred HHHHHHhhccccccccccceEEEEEECCC--CCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCCCCCCCCCCchhHHH
Q 014001 236 KQLGNALHSVNSVRNRKQHLQLVYVIGPP--HSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISF 313 (432)
Q Consensus 236 ~eL~~~L~~~~~~~~~k~~~~lsvavpp~--~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~aPl~wv~~ 313 (432)
.+|..+.+.... ..+...-.+.+. .+. ....|| +.++....+.-|++.+|+.=|.-. .+.+ .+..|+.+
T Consensus 519 ~~l~~~v~~~~~-----~~~~tarni~a~~~l~p-~~e~w~-aQ~l~~~~~~yD~~a~mampyme~-~~~~-~~~~wl~~ 589 (671)
T PRK14582 519 LELSARVKAIRG-----PQVKTARNIFALPVIQP-ESEAWF-AQNLDDFLKSYDWTAPMAMPLMEG-VAEK-SSDAWLIQ 589 (671)
T ss_pred HHHHHHHHhhcC-----ccceeeccccccccCCh-hHHHHH-HhHHHHHHhhcchhhhhcchhhhc-cCcc-cHHHHHHH
Confidence 999999886420 122222222221 110 112344 578899999999999999555421 1222 35789999
Q ss_pred HHHHHhcCCCCCCCCCCCeEEEeecccccccccCCCCCCCccCHHHHH---HHHHhCCC
Q 014001 314 TLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYL---NLLQKHKP 369 (432)
Q Consensus 314 ~l~~~~~~~~~~~~ip~~KivlGipfYG~~w~~~~~~~~~~i~~~~~~---~l~~~~~~ 369 (432)
.++.+.+ .-...+|+++-+. .++|...+ ..+|+..+.. +++.++|.
T Consensus 590 l~~~v~~-----~~~~~~k~vfelq--~~dw~~~~---~~~i~~~~l~~~~~~l~~~g~ 638 (671)
T PRK14582 590 LVNQVKN-----IPGALDKTIFELQ--ARDWQKNG---QQAISSQQLAHWMSLLQLNGV 638 (671)
T ss_pred HHHHHHh-----cCCcccceEEEee--ccccccCC---CCCCCHHHHHHHHHHHHHcCC
Confidence 9998874 2246799999988 56787432 3478877654 45555553
No 35
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=94.47 E-value=0.052 Score=36.13 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=28.3
Q ss_pred EeeccCCCChhHHHHhccccCCCCHHHHHHHcCC
Q 014001 60 KYSTRANRSATHMHQRGLVKTDVNYQEILTENSK 93 (432)
Q Consensus 60 ~~~~~~gdt~~~i~~r~lv~~~~~~~~il~~~~~ 93 (432)
.|++++|||+++|+++ ++++..+|.+.|+.
T Consensus 2 ~~~v~~gdt~~~ia~~----~~~~~~~~~~~N~~ 31 (46)
T cd00118 2 TYTVKKGDTLSSIAQR----YGISVEELLKLNGL 31 (46)
T ss_pred EEEECCCCCHHHHHHH----HCcCHHHHHHHcCC
Confidence 5899999999999999 99999999999887
No 36
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=94.33 E-value=0.037 Score=37.52 Aligned_cols=28 Identities=11% Similarity=0.370 Sum_probs=25.1
Q ss_pred ccCCCChhHHHHhccccCCCCHHHHHHHcCCC
Q 014001 63 TRANRSATHMHQRGLVKTDVNYQEILTENSKV 94 (432)
Q Consensus 63 ~~~gdt~~~i~~r~lv~~~~~~~~il~~~~~~ 94 (432)
|++|||+|+|+++ +++++++|.+.|...
T Consensus 1 v~~gdtl~~IA~~----~~~~~~~l~~~N~~~ 28 (44)
T TIGR02899 1 VQKGDTLWKIAKK----YGVDFDELIQANPQL 28 (44)
T ss_pred CCCCCCHHHHHHH----HCcCHHHHHHHhhcC
Confidence 5789999999999 999999999998643
No 37
>smart00257 LysM Lysin motif.
Probab=92.81 E-value=0.13 Score=33.69 Aligned_cols=30 Identities=13% Similarity=0.355 Sum_probs=27.2
Q ss_pred EeeccCCCChhHHHHhccccCCCCHHHHHHHcCC
Q 014001 60 KYSTRANRSATHMHQRGLVKTDVNYQEILTENSK 93 (432)
Q Consensus 60 ~~~~~~gdt~~~i~~r~lv~~~~~~~~il~~~~~ 93 (432)
+|.+++|||+++|+++ ++++..+|.+.|+.
T Consensus 1 ~~~v~~gdt~~~ia~~----~~~~~~~~~~~N~~ 30 (44)
T smart00257 1 TYTVKKGDTLSSIARR----YGISVSDLLELNNI 30 (44)
T ss_pred CeEeCCCCCHHHHHHH----hCCCHHHHHHHcCC
Confidence 3789999999999999 99999999999873
No 38
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=92.25 E-value=2.5 Score=41.37 Aligned_cols=160 Identities=16% Similarity=0.261 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHHHHHHhc-CcCeEEeecccccccCCCC---CCH---HHHHHHHHHHHHHHHHhhccccccccccceEE
Q 014001 185 KKKLRDKAIDLILTECKEM-EYDGIVLESWSTWTAYGIL---HDP---ELRNMALEFIKQLGNALHSVNSVRNRKQHLQL 257 (432)
Q Consensus 185 ~~~~r~~~i~~iv~~l~~~-gfDGIdiD~w~~~~~~e~~---~~~---~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~l 257 (432)
+|+.|+. |.+|-+-+..| .||||-+-=---+..||.. .++ .-.+.+..|..+|+++.+... +++..
T Consensus 117 ~p~~r~~-I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~Kt~~Li~ft~eL~~~v~~~r------p~lkT 189 (294)
T PF14883_consen 117 DPEARQI-IKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQKTRALIDFTMELAAAVRRYR------PDLKT 189 (294)
T ss_pred CHHHHHH-HHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhhHHHHHHHHHHHHHHHHHHHHhC------ccchh
Confidence 5666654 56666666666 8999998201111223310 011 122467889999999998753 22222
Q ss_pred EEEECCC--CCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCCCCCCCCCCchhHHHHHHHHhcCCCCCCCCCCCeEEE
Q 014001 258 VYVIGPP--HSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFL 335 (432)
Q Consensus 258 svavpp~--~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~aPl~wv~~~l~~~~~~~~~~~~ip~~Kivl 335 (432)
.--|.+. ... ....|| +.++....+.-|+..+|+.=|+-. ...|..|+.+.++.+.. ...+.+|+++
T Consensus 190 ARNiya~pvl~P-~se~Wf-AQnl~~fl~~YD~taimAMPymE~----~~~~~~WL~~Lv~~v~~-----~p~~l~KtvF 258 (294)
T PF14883_consen 190 ARNIYAEPVLNP-ESEAWF-AQNLDDFLKAYDYTAIMAMPYMEQ----AEDPEQWLAQLVDAVAA-----RPGGLDKTVF 258 (294)
T ss_pred hhcccccccCCc-chhhHH-HHhHHHHHHhCCeeheeccchhcc----ccCHHHHHHHHHHHHHh-----cCCcccceEE
Confidence 2222221 111 112344 578899999999999998766532 11688999999998885 3445799999
Q ss_pred eecccccccccCCCCCCCccCHHHH---HHHHHhCCC
Q 014001 336 GINFYGNDFVLSEASGGGAITGREY---LNLLQKHKP 369 (432)
Q Consensus 336 GipfYG~~w~~~~~~~~~~i~~~~~---~~l~~~~~~ 369 (432)
-+. .++|.. ..+|+..+. ++++++.|.
T Consensus 259 ELQ--a~dwr~-----~~~I~~~~L~~~m~~L~~~G~ 288 (294)
T PF14883_consen 259 ELQ--AVDWRT-----SKPIPSEELADWMRQLQLNGA 288 (294)
T ss_pred EEe--ccCCcc-----CCcCCHHHHHHHHHHHHHcCC
Confidence 988 567875 456777655 455555554
No 39
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=92.08 E-value=0.18 Score=50.24 Aligned_cols=36 Identities=8% Similarity=0.169 Sum_probs=31.8
Q ss_pred eeEeeccCCCChhHHHHhccccCCCCHHHHHHHcCCCCCC
Q 014001 58 CTKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKVSEN 97 (432)
Q Consensus 58 ~~~~~~~~gdt~~~i~~r~lv~~~~~~~~il~~~~~~~~~ 97 (432)
.-+|+|++|||||+|+.+ +|+++++|.+.|+...++
T Consensus 60 ~~~y~Vk~GDTL~~IA~~----~g~~~~~La~~N~l~~p~ 95 (319)
T PRK10871 60 GSTYTVKKGDTLFYIAWI----TGNDFRDLAQRNNIQAPY 95 (319)
T ss_pred CCceEECCCCHHHHHHHH----HCcCHHHHHHhcCCCCCc
Confidence 447999999999999998 999999999999886544
No 40
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional
Probab=91.50 E-value=0.19 Score=52.78 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=31.1
Q ss_pred eeEeeccCCCChhHHHHhccccCCCCHHHHHHHcCCCC
Q 014001 58 CTKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKVS 95 (432)
Q Consensus 58 ~~~~~~~~gdt~~~i~~r~lv~~~~~~~~il~~~~~~~ 95 (432)
..+|+|++|||+++|++| +++++++|++.|+...
T Consensus 402 ~~~Y~Vr~GDTL~sIA~k----ygVtv~~L~~~N~l~~ 435 (456)
T PRK10783 402 SITYRVRKGDSLSSIAKR----HGVNIKDVMRWNSDTA 435 (456)
T ss_pred ceeEEeCCCCCHHHHHHH----hCCCHHHHHHhcCCCC
Confidence 567999999999999999 9999999999998653
No 41
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=91.32 E-value=2.7 Score=42.04 Aligned_cols=87 Identities=10% Similarity=0.161 Sum_probs=57.7
Q ss_pred ChHHHHHHHhCCCcEEeEEeeccCc---------------------------h--hhcCCHHHHHHHHHHHHHHHHhcCc
Q 014001 155 DAGWLLELRKGDALVLPRVVLEAFP---------------------------K--ELLRKKKLRDKAIDLILTECKEMEY 205 (432)
Q Consensus 155 d~~~l~~~~~~~~kv~P~v~~~g~~---------------------------~--~~l~~~~~r~~~i~~iv~~l~~~gf 205 (432)
++.-+..+|++|.+++--+++|.+. + .=+.+++-|+-+.+. ++.+.+.||
T Consensus 83 s~~~i~~Lk~~g~~viaYlSvGe~E~~R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~r-l~~l~~kGf 161 (315)
T TIGR01370 83 SPEEIVRAAAAGRWPIAYLSIGAAEDYRFYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSY-LDRVIAQGF 161 (315)
T ss_pred CHHHHHHHHhCCcEEEEEEEchhccccchhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHH-HHHHHHcCC
Confidence 3455667777777787777776421 0 013467778877766 678889999
Q ss_pred CeEEeecccccccCCCC-----CCHHHHHHHHHHHHHHHHHhhcc
Q 014001 206 DGIVLESWSTWTAYGIL-----HDPELRNMALEFIKQLGNALHSV 245 (432)
Q Consensus 206 DGIdiD~w~~~~~~e~~-----~~~~d~~~~~~fl~eL~~~L~~~ 245 (432)
||+.+|.-. +|+.. ..+...+....|+++|.+.+|+.
T Consensus 162 DGvfLD~lD---sy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~ 203 (315)
T TIGR01370 162 DGVYLDLID---AFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQ 203 (315)
T ss_pred CeEeeccch---hhhhhcccCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 999998421 12211 12455577899999999888874
No 42
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=91.02 E-value=0.21 Score=39.99 Aligned_cols=52 Identities=8% Similarity=0.145 Sum_probs=26.2
Q ss_pred eEeeccCCCChhHHHHhccccCCCCHHHHHHHcCCC-CCCCCCCCCCccEEEEEcCC
Q 014001 59 TKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKV-SENASHRYYTYPVLAYITPW 114 (432)
Q Consensus 59 ~~~~~~~gdt~~~i~~r~lv~~~~~~~~il~~~~~~-~~~~~~~~~~~~vlgY~~~w 114 (432)
.+|+|++||||..|+.+ .|++.+++.+--... ...+=.+...+..+-|..+-
T Consensus 3 ~~~~V~~GDtLs~iF~~----~gls~~dl~~v~~~~~~~k~L~~L~pGq~l~f~~d~ 55 (85)
T PF04225_consen 3 QEYTVKSGDTLSTIFRR----AGLSASDLYAVLEADGEAKPLTRLKPGQTLEFQLDE 55 (85)
T ss_dssp -EEE--TT--HHHHHHH----TT--HHHHHHHHHHGGGT--GGG--TT-EEEEEE-T
T ss_pred cEEEECCCCcHHHHHHH----cCCCHHHHHHHHhccCccchHhhCCCCCEEEEEECC
Confidence 47999999999999999 999988885542111 11111233447788886653
No 43
>TIGR02907 spore_VI_D stage VI sporulation protein D. SpoVID, the stage VI sporulation protein D, is restricted to endospore-forming members of the bacteria, all of which are found among the Firmicutes. It is widely distributed but not quite universal in this group. Between well-conserved N-terminal and C-terminal domains is a poorly conserved, low-complexity region of variable length, rich enough in glutamic acid to cause spurious BLAST search results unless a filter is used. The seed alignment for this model was trimmed, in effect, by choosing member sequences in which these regions are relatively short. SpoVID is involved in spore coat assembly by the mother cell compartment late in the process of sporulation.
Probab=90.92 E-value=0.23 Score=49.28 Aligned_cols=35 Identities=6% Similarity=0.122 Sum_probs=31.2
Q ss_pred eeeeEeeccCCCChhHHHHhccccCCCCHHHHHHHcCCC
Q 014001 56 LYCTKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKV 94 (432)
Q Consensus 56 ~~~~~~~~~~gdt~~~i~~r~lv~~~~~~~~il~~~~~~ 94 (432)
+-...|.|++|||+++|++| ++++++.|.+.|+..
T Consensus 291 ~~~~~YiVq~GDTL~sIAkR----YGVSV~~L~r~N~L~ 325 (338)
T TIGR02907 291 TKLRMCIVQEGDTIETIAER----YEISVSQLIRHNQLE 325 (338)
T ss_pred cccEEEEECCCCCHHHHHHH----HCcCHHHHHHHhCCC
Confidence 34567999999999999999 999999999999764
No 44
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=87.43 E-value=1.6 Score=42.79 Aligned_cols=95 Identities=17% Similarity=-0.002 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCcCeEEeecccccccCCCCCC---------HHHHHHHHHHHHHHHHHhhccccccccccceEEEEEECC
Q 014001 193 IDLILTECKEMEYDGIVLESWSTWTAYGILHD---------PELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGP 263 (432)
Q Consensus 193 i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~---------~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp 263 (432)
--+|.+.+.+.|||-|.+|.-.-++.-+++.. -.--+++..||.-.|++|.. -+|+.|..
T Consensus 198 NvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~v-----------pIS~DIYG 266 (400)
T COG1306 198 NVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELEV-----------PISADIYG 266 (400)
T ss_pred hHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhccc-----------ceEEEeec
Confidence 34678888899999999995321111111100 01225677899999998863 47888876
Q ss_pred CCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCC
Q 014001 264 PHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGP 299 (432)
Q Consensus 264 ~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~ 299 (432)
.. .+.+...--+.+++.|+.+||.+.-|-|--|.+
T Consensus 267 ~n-Gw~~t~~~~GQ~~e~ls~yVDvIsPMfYPSHy~ 301 (400)
T COG1306 267 QN-GWSSTDMALGQFWEALSSYVDVISPMFYPSHYG 301 (400)
T ss_pred cc-CccCCcchhhhhHHHHHhhhhhccccccccccc
Confidence 42 222222334689999999999999999987765
No 45
>PRK06347 autolysin; Reviewed
Probab=86.93 E-value=0.56 Score=50.72 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=30.9
Q ss_pred eeEeeccCCCChhHHHHhccccCCCCHHHHHHHcCCCC
Q 014001 58 CTKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKVS 95 (432)
Q Consensus 58 ~~~~~~~~gdt~~~i~~r~lv~~~~~~~~il~~~~~~~ 95 (432)
...|.|++|||+|+|++| ++++.++|++.|+...
T Consensus 547 ~~~Y~Vk~GDTL~sIA~K----ygvSv~~L~~~N~L~~ 580 (592)
T PRK06347 547 VKTYTVKKGDSLWAISRQ----YKTTVDNIKAWNKLTS 580 (592)
T ss_pred ceeeecCCCCcHHHHHHH----hCCCHHHHHHhcCCCc
Confidence 457999999999999999 9999999999997753
No 46
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.87 E-value=1.2 Score=45.87 Aligned_cols=103 Identities=17% Similarity=0.312 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHhcCcCeEEeeccc-----cccc---------CCC---C-CCHH-----HHHHHHHHHHHHHHHh
Q 014001 186 KKLRDKAIDLILTECKEMEYDGIVLESWS-----TWTA---------YGI---L-HDPE-----LRNMALEFIKQLGNAL 242 (432)
Q Consensus 186 ~~~r~~~i~~iv~~l~~~gfDGIdiD~w~-----~~~~---------~e~---~-~~~~-----d~~~~~~fl~eL~~~L 242 (432)
|+.|+-..+-+++.+++|..|||.+| .. +++. +|. . .++. -+++-..||+++..++
T Consensus 181 Pevq~~i~~lv~evV~~YdvDGIQfD-d~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~V 259 (418)
T COG1649 181 PEVQDFITSLVVEVVRNYDVDGIQFD-DYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTV 259 (418)
T ss_pred hHHHHHHHHHHHHHHhCCCCCceecc-eeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 68888888888999999999999998 21 1110 111 0 1222 3577889999999999
Q ss_pred hccccccccccceEEEEEE-CCCCCCCCCCCCCCCCCHHHH--hccccEEEEeeccC
Q 014001 243 HSVNSVRNRKQHLQLVYVI-GPPHSEKFQPHDFGPVDLQSL--SDAVDGFSLMTYDF 296 (432)
Q Consensus 243 ~~~~~~~~~k~~~~lsvav-pp~~~~~~~~~~~~~~d~~~l--~~~vD~v~lMtYD~ 296 (432)
++. |++..++++- ++..+... ...+-..|...- ..++|++.+|+|=-
T Consensus 260 Kav------Kp~v~~svsp~n~~~~~~f-~y~~~~qDw~~Wv~~G~iD~l~pqvYr~ 309 (418)
T COG1649 260 KAV------KPNVKFSVSPFNPLGSATF-AYDYFLQDWRRWVRQGLIDELAPQVYRT 309 (418)
T ss_pred Hhh------CCCeEEEEccCCCCCccce-ehhhhhhhHHHHHHcccHhhhhhhhhcc
Confidence 986 4666666554 32111100 011111222221 46799999999954
No 47
>COG1388 LytE FOG: LysM repeat [Cell envelope biogenesis, outer membrane]
Probab=86.57 E-value=0.73 Score=39.09 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=32.1
Q ss_pred eeEeeccCCCChhHHHHhccccCCCCHHHHHHHcCCCCC
Q 014001 58 CTKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKVSE 96 (432)
Q Consensus 58 ~~~~~~~~gdt~~~i~~r~lv~~~~~~~~il~~~~~~~~ 96 (432)
..+|.|++||||+.|+++ ++++..+|++.|...+.
T Consensus 66 ~~~~~V~~gdtL~~Ia~~----~~~tv~~l~~~n~l~~~ 100 (124)
T COG1388 66 VVTYTVKKGDTLSKIARK----YGVTVAELKQLNNLSSD 100 (124)
T ss_pred CceEEEecCCCHHHHHHH----hCCCHHHHHHHhccCCC
Confidence 468999999999999999 99999999999877765
No 48
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=86.43 E-value=6 Score=43.59 Aligned_cols=165 Identities=16% Similarity=0.210 Sum_probs=95.3
Q ss_pred CHHHHHHHHHHHHHHHHhc-CcCeEEeecccccccCCCC---------------------CCHH--------HHHHHHHH
Q 014001 185 KKKLRDKAIDLILTECKEM-EYDGIVLESWSTWTAYGIL---------------------HDPE--------LRNMALEF 234 (432)
Q Consensus 185 ~~~~r~~~i~~iv~~l~~~-gfDGIdiD~w~~~~~~e~~---------------------~~~~--------d~~~~~~f 234 (432)
+|+.|+ .|.+|-+-+..| .||||=+.=.--+..||.. .+|+ -.+.+..|
T Consensus 439 ~~~~~~-~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~~~~~~~~w~~~k~~~l~~f 517 (672)
T PRK14581 439 NPEVRQ-RIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQDPEMMQRWTRYKSKYLIDF 517 (672)
T ss_pred CHHHHH-HHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhcCHHHHHHHHHHHHHHHHHH
Confidence 455555 456666666665 7999988311011112211 0222 12345689
Q ss_pred HHHHHHHhhccccccccccceEEEEEECCC--CCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCCCCCCCCCCchhHH
Q 014001 235 IKQLGNALHSVNSVRNRKQHLQLVYVIGPP--HSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWIS 312 (432)
Q Consensus 235 l~eL~~~L~~~~~~~~~k~~~~lsvavpp~--~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~aPl~wv~ 312 (432)
-.+|.++.+.... ..+...-.+.+. .+. ....|| +.++..+.+..|++.+|+|=|--. .+.+ .|-.|..
T Consensus 518 ~~~l~~~v~~~~~-----p~~~tarniya~~~l~p-~~~~w~-aQ~l~~~~~~yD~~a~mamp~me~-~~~~-~~~~w~~ 588 (672)
T PRK14581 518 TNELTREVRDIRG-----PQVKSARNIFAMPILEP-ESEAWF-AQNLDDFLANYDWVAPMAMPLMEK-VPLS-ESNEWLA 588 (672)
T ss_pred HHHHHHHHHhhcC-----ccceehhcccccccCCh-hHHHHH-HhHHHHHHhhcchhHHhhchhhhc-cccc-cHHHHHH
Confidence 9999999986420 123222222221 111 112344 578899999999999999876421 1211 3578999
Q ss_pred HHHHHHhcCCCCCCCCCCCeEEEeecccccccccCCCCCCCccCHHHHH---HHHHhCC
Q 014001 313 FTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYL---NLLQKHK 368 (432)
Q Consensus 313 ~~l~~~~~~~~~~~~ip~~KivlGipfYG~~w~~~~~~~~~~i~~~~~~---~l~~~~~ 368 (432)
+.++.+.+ .-...+|+++-+. ..+|...+ ...+|+..+.. +++.++|
T Consensus 589 ~l~~~v~~-----~~~~~~k~vfelQ--~~dw~~~~--~~~~i~~~~l~~~m~~l~~~g 638 (672)
T PRK14581 589 ELVNKVAQ-----RPGALEKTVFELQ--SKDWTQPE--GNNAISGPILAGWMRQLQLSG 638 (672)
T ss_pred HHHHHHHh-----cCCcccceEEEee--cccccCCC--ccCCCCHHHHHHHHHHHHHcC
Confidence 88888764 2235799999988 56787432 24478877654 4455554
No 49
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=86.37 E-value=1.7 Score=44.10 Aligned_cols=105 Identities=10% Similarity=0.065 Sum_probs=67.9
Q ss_pred CCCCcEEEEEEEEeecCCeEEEecCCCCCChHHHHHHHhCCCcEEeEEeec-----c---Cchhh-cCCHHHHHHHHHHH
Q 014001 126 NSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRKGDALVLPRVVLE-----A---FPKEL-LRKKKLRDKAIDLI 196 (432)
Q Consensus 126 ~~~lT~isp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~~~~kv~P~v~~~-----g---~~~~~-l~~~~~r~~~i~~i 196 (432)
+.+++.+. .|..-..+|-+.+ +..+.|.++|++|+.|+-.|.+. | |-.+| ..++.-.--++..+
T Consensus 107 WQY~D~mV-yWgGSsGEGii~t------PSaDVIDaaHrNGVPvlGt~Ffppk~ygg~~ewv~~mLk~dedGsfP~A~kl 179 (553)
T COG4724 107 WQYLDSMV-YWGGSSGEGIIPT------PSADVIDAAHRNGVPVLGTLFFPPKNYGGDQEWVAEMLKQDEDGSFPIARKL 179 (553)
T ss_pred HHhhhhee-eecCcCCCccccC------CchhhhhhhhcCCCceeeeeecChhhcCchHHHHHHHHhcCcCCCChhHHHH
Confidence 34455554 3554433433221 33467889999888777655432 1 11244 45666677789999
Q ss_pred HHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhh
Q 014001 197 LTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALH 243 (432)
Q Consensus 197 v~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~ 243 (432)
++.++-|||||--|+=|. ++. .+++.+++.+||..+++.-.
T Consensus 180 v~vAkyYGfdGwFINqET-----~G~-~~~~a~~M~~f~ly~ke~~~ 220 (553)
T COG4724 180 VDVAKYYGFDGWFINQET-----TGD-VKPLAEKMRQFMLYSKEYAA 220 (553)
T ss_pred HHHHHhcCcceeEecccc-----cCC-CcchHHHHHHHHHHHHhccc
Confidence 999999999999998332 232 56777788888888886544
No 50
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=85.57 E-value=0.75 Score=48.23 Aligned_cols=81 Identities=9% Similarity=0.013 Sum_probs=51.2
Q ss_pred eeEeeccCCCChhHHHHhccccCCCCHHHHHHHcCCCCCC--CC------CCCCCccEEEEEcCCC-------CCCchhh
Q 014001 58 CTKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKVSEN--AS------HRYYTYPVLAYITPWN-------SKGYELA 122 (432)
Q Consensus 58 ~~~~~~~~gdt~~~i~~r~lv~~~~~~~~il~~~~~~~~~--~~------~~~~~~~vlgY~~~w~-------~~gy~~~ 122 (432)
..+|.|++|||||+|+++ +++++++|.+.|+..... ++ ....+-.+-++++... ...|.+.
T Consensus 27 a~tytVq~GDTLw~IA~~----ygvtv~~I~~~N~l~~~~I~~Gq~L~Ip~~~~~~~~~~~Vta~~LNVRsgps~s~~II 102 (481)
T PRK13914 27 ASTVVVEAGDTLWGIAQS----KGTTVDAIKKANNLTTDKIVPGQKLQVNEVAAAEKTEKSVSATWLNVRSGAGVDNSII 102 (481)
T ss_pred CceEEECCCCCHHHHHHH----HCCCHHHHHHHhCCCcccccCCCEEEeCCCCcccccceeEecceEEEecCCCCCccee
Confidence 467999999999999999 999999999999653211 11 1111234455555431 1233332
Q ss_pred --hhcCCCCcEEE---EEEEEeecC
Q 014001 123 --KMFNSKFTHLS---PVWYDLKSQ 142 (432)
Q Consensus 123 --~~~~~~lT~is---p~w~~i~~~ 142 (432)
-..+.+++.+. --|++|+-+
T Consensus 103 gsl~~G~~V~Vl~~~~ngW~kI~~~ 127 (481)
T PRK13914 103 TSIKGGTKVTVETTESNGWHKITYN 127 (481)
T ss_pred eeecCCCEEEEeecccCCeEEEEcC
Confidence 12355666653 349999974
No 51
>PRK14706 glycogen branching enzyme; Provisional
Probab=85.08 E-value=5.9 Score=43.52 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=57.6
Q ss_pred hHHHHHHHhCCCcEEeEEeeccC-----------------------------chh--hcCCHHHHHHHHHHHHHHHHhcC
Q 014001 156 AGWLLELRKGDALVLPRVVLEAF-----------------------------PKE--LLRKKKLRDKAIDLILTECKEME 204 (432)
Q Consensus 156 ~~~l~~~~~~~~kv~P~v~~~g~-----------------------------~~~--~l~~~~~r~~~i~~iv~~l~~~g 204 (432)
+.+++++|+.|++|+.=++.+.. +.. -+.+++.|+-+++++.-++++++
T Consensus 220 ~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 220 KYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred HHHHHHHHHCCCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 45777888889998865554321 001 13478999999999999999999
Q ss_pred cCeEEeeccccc--ccC------CCCCCHHHHHHHHHHHHHHHHHhhcc
Q 014001 205 YDGIVLESWSTW--TAY------GILHDPELRNMALEFIKQLGNALHSV 245 (432)
Q Consensus 205 fDGIdiD~w~~~--~~~------e~~~~~~d~~~~~~fl~eL~~~L~~~ 245 (432)
+||+-+|.-... ..+ ++.........-..||++|++.++..
T Consensus 300 iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~ 348 (639)
T PRK14706 300 VDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHM 348 (639)
T ss_pred CCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHh
Confidence 999999942110 000 00000001122356999999999875
No 52
>PRK12568 glycogen branching enzyme; Provisional
Probab=84.32 E-value=6.2 Score=43.86 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=58.1
Q ss_pred hHHHHHHHhCCCcEEeEEeeccCc-----------------------------hh--hcCCHHHHHHHHHHHHHHHHhcC
Q 014001 156 AGWLLELRKGDALVLPRVVLEAFP-----------------------------KE--LLRKKKLRDKAIDLILTECKEME 204 (432)
Q Consensus 156 ~~~l~~~~~~~~kv~P~v~~~g~~-----------------------------~~--~l~~~~~r~~~i~~iv~~l~~~g 204 (432)
+.+++++|+.|++|+.=++.+..+ .. -+.+|+.|+-+++++.-++++++
T Consensus 322 k~lV~~~H~~Gi~VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 322 AQFVDACHRAGIGVILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred HHHHHHHHHCCCEEEEEeccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 457788888899988655543211 00 24578999999999999999999
Q ss_pred cCeEEeecccc-c-ccC-----CCCCCH-HHHH--HHHHHHHHHHHHhhcc
Q 014001 205 YDGIVLESWST-W-TAY-----GILHDP-ELRN--MALEFIKQLGNALHSV 245 (432)
Q Consensus 205 fDGIdiD~w~~-~-~~~-----e~~~~~-~d~~--~~~~fl~eL~~~L~~~ 245 (432)
+||+-+|.-.. + -.| +.+++. ..++ .-..|+++|++.++..
T Consensus 402 IDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~ 452 (730)
T PRK12568 402 LDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQ 452 (730)
T ss_pred ceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHH
Confidence 99999993110 0 000 000000 0111 2357999999999975
No 53
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=83.62 E-value=5 Score=43.25 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=56.9
Q ss_pred hHHHHHHHhCCCcEEeEEeeccCc----------------------h-hhcCCH---HHHHHHHHHHHHHHHhcCcCeEE
Q 014001 156 AGWLLELRKGDALVLPRVVLEAFP----------------------K-ELLRKK---KLRDKAIDLILTECKEMEYDGIV 209 (432)
Q Consensus 156 ~~~l~~~~~~~~kv~P~v~~~g~~----------------------~-~~l~~~---~~r~~~i~~iv~~l~~~gfDGId 209 (432)
+.+++++|++|++|+.=++++... . --+.++ ..|+-+++++.-+++++++||+-
T Consensus 163 k~lV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR 242 (542)
T TIGR02402 163 KALVDAAHGLGLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLR 242 (542)
T ss_pred HHHHHHHHHCCCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 567888888899988665554211 0 113345 89999999999999999999999
Q ss_pred eecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccc
Q 014001 210 LESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVN 246 (432)
Q Consensus 210 iD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~ 246 (432)
+|.- ..+.. ..-..|++++++++++..
T Consensus 243 ~D~~------~~~~~----~~~~~~l~~~~~~~~~~~ 269 (542)
T TIGR02402 243 LDAV------HAIAD----TSAKHILEELAREVHELA 269 (542)
T ss_pred EeCH------HHhcc----ccHHHHHHHHHHHHHHHC
Confidence 9941 11111 112469999999998753
No 54
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=83.54 E-value=1.2 Score=46.79 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=30.9
Q ss_pred eeEeeccCCCChhHHHHhccccCCCCHHHHHHHcCCCC
Q 014001 58 CTKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKVS 95 (432)
Q Consensus 58 ~~~~~~~~gdt~~~i~~r~lv~~~~~~~~il~~~~~~~ 95 (432)
..+|.|++|||||+|+++ +++++++|.+.|+...
T Consensus 199 a~tytVq~GDTL~sIAkr----YgVtv~eI~~~N~l~s 232 (481)
T PRK13914 199 ATTHAVKSGDTIWALSVK----YGVSVQDIMSWNNLSS 232 (481)
T ss_pred CeEEEECCCCCHHHHHHH----HCCCHHHHHHhcCCCc
Confidence 467999999999999999 9999999999997654
No 55
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=82.50 E-value=3.7 Score=35.63 Aligned_cols=58 Identities=10% Similarity=0.070 Sum_probs=42.9
Q ss_pred CChHHHHHHHhCCCcEEeEEeeccCc-----------------h-------------hhcCCHHHHHHHHHHHHHHHHhc
Q 014001 154 ADAGWLLELRKGDALVLPRVVLEAFP-----------------K-------------ELLRKKKLRDKAIDLILTECKEM 203 (432)
Q Consensus 154 ~d~~~l~~~~~~~~kv~P~v~~~g~~-----------------~-------------~~l~~~~~r~~~i~~iv~~l~~~ 203 (432)
+-...++.+|+.|++|+-++.++ |+ . .+--|...++.++..|-+++.+|
T Consensus 45 llge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 45 LLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred HHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 33566777788889999888776 42 0 12234457888889998888999
Q ss_pred CcCeEEeec
Q 014001 204 EYDGIVLES 212 (432)
Q Consensus 204 gfDGIdiD~ 212 (432)
++|||=+||
T Consensus 124 ~~DGiF~D~ 132 (132)
T PF14871_consen 124 DVDGIFFDI 132 (132)
T ss_pred CCCEEEecC
Confidence 999999984
No 56
>PRK06347 autolysin; Reviewed
Probab=82.21 E-value=1.3 Score=47.87 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=30.2
Q ss_pred eEeeccCCCChhHHHHhccccCCCCHHHHHHHcCCCC
Q 014001 59 TKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKVS 95 (432)
Q Consensus 59 ~~~~~~~gdt~~~i~~r~lv~~~~~~~~il~~~~~~~ 95 (432)
..|+|++||||++|+++ +++++++|.+.|+...
T Consensus 480 ~~YtVk~GDTL~sIAkk----ygVSv~~L~~~N~l~s 512 (592)
T PRK06347 480 KVYTVAKGDSLWRIANN----NKVTIANLKSWNNLKS 512 (592)
T ss_pred eeeeecCCCCHHHHHHH----HCCCHHHHHHhcCCCc
Confidence 46999999999999999 9999999999998653
No 57
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=81.28 E-value=3.7 Score=44.26 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcCeEEeeccccccc-CCC-CCCH-HHHHHHHHHHHHHHHHhhc
Q 014001 184 RKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTA-YGI-LHDP-ELRNMALEFIKQLGNALHS 244 (432)
Q Consensus 184 ~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~-~e~-~~~~-~d~~~~~~fl~eL~~~L~~ 244 (432)
.++.-|+-+++...+.++..||||+.||-.=.++. |.. .... ..++.|..||++++++++.
T Consensus 238 ~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~ 301 (559)
T PF13199_consen 238 GNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPD 301 (559)
T ss_dssp T-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCC
Confidence 46778999999999999999999999994211110 111 0122 3478899999999999964
No 58
>PRK05402 glycogen branching enzyme; Provisional
Probab=80.64 E-value=9.5 Score=42.63 Aligned_cols=89 Identities=16% Similarity=0.208 Sum_probs=57.4
Q ss_pred hHHHHHHHhCCCcEEeEEeeccCc-----------------------------h--hhcCCHHHHHHHHHHHHHHHHhcC
Q 014001 156 AGWLLELRKGDALVLPRVVLEAFP-----------------------------K--ELLRKKKLRDKAIDLILTECKEME 204 (432)
Q Consensus 156 ~~~l~~~~~~~~kv~P~v~~~g~~-----------------------------~--~~l~~~~~r~~~i~~iv~~l~~~g 204 (432)
+.+++++|+.|++|+.=++++... . --+.+++.|+-+++++.-++++++
T Consensus 318 k~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 318 RYFVDACHQAGIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 567888888899988655443110 0 024578999999999999999999
Q ss_pred cCeEEeeccccc---------ccC-CCC-CCHHHHHHHHHHHHHHHHHhhcc
Q 014001 205 YDGIVLESWSTW---------TAY-GIL-HDPELRNMALEFIKQLGNALHSV 245 (432)
Q Consensus 205 fDGIdiD~w~~~---------~~~-e~~-~~~~d~~~~~~fl~eL~~~L~~~ 245 (432)
+||+-+|.-... +.+ +.. ...++ ..-..|++++++.++..
T Consensus 398 iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~fl~~~~~~~~~~ 448 (726)
T PRK05402 398 IDGLRVDAVASMLYLDYSRKEGEWIPNIYGGREN-LEAIDFLRELNAVVHEE 448 (726)
T ss_pred CcEEEECCHHHhhhccccccccccccccccCcCC-HHHHHHHHHHHHHHHHH
Confidence 999999941100 000 000 00011 12357999999999875
No 59
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=80.61 E-value=8.6 Score=42.08 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=56.7
Q ss_pred hHHHHHHHhCCCcEEeEEeeccCc----------h-----------------h----hcCCHHHHHHHHHHHHHHHHhcC
Q 014001 156 AGWLLELRKGDALVLPRVVLEAFP----------K-----------------E----LLRKKKLRDKAIDLILTECKEME 204 (432)
Q Consensus 156 ~~~l~~~~~~~~kv~P~v~~~g~~----------~-----------------~----~l~~~~~r~~~i~~iv~~l~~~g 204 (432)
+.+++++|+.|++|+.=++++... . . -..+++.|+-+++++.-++++++
T Consensus 209 k~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 209 MYFVDACHQAGIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred HHHHHHHHHCCCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 557788888899988655543110 0 0 12568999999999999999999
Q ss_pred cCeEEeecccccc--cC--------CCC-CCHHHHHHHHHHHHHHHHHhhcc
Q 014001 205 YDGIVLESWSTWT--AY--------GIL-HDPELRNMALEFIKQLGNALHSV 245 (432)
Q Consensus 205 fDGIdiD~w~~~~--~~--------e~~-~~~~d~~~~~~fl~eL~~~L~~~ 245 (432)
+||+-+|.-...- .+ +.. ....+. .=..|++++++.+++.
T Consensus 289 iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fl~~~~~~v~~~ 339 (613)
T TIGR01515 289 IDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENL-EAVDFLRKLNQTVYEA 339 (613)
T ss_pred CcEEEEcCHHHhhhhccccccccccccccCCcCCh-HHHHHHHHHHHHHHHH
Confidence 9999999411000 00 000 000111 1246999999999875
No 60
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=80.57 E-value=9.3 Score=41.74 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=54.1
Q ss_pred hHHHHHHHhCCCcEEeEEeeccCc-------------------------------hh-hcCCHHHHHHHHHHHHHHHHhc
Q 014001 156 AGWLLELRKGDALVLPRVVLEAFP-------------------------------KE-LLRKKKLRDKAIDLILTECKEM 203 (432)
Q Consensus 156 ~~~l~~~~~~~~kv~P~v~~~g~~-------------------------------~~-~l~~~~~r~~~i~~iv~~l~~~ 203 (432)
+.+++++|+.|++|+.=++++... .. -..+|..|+-+++++.-+++++
T Consensus 232 k~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~ 311 (605)
T TIGR02104 232 KQMIQALHENGIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEY 311 (605)
T ss_pred HHHHHHHHHCCCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 456777888899988666553210 00 1236889999999999999999
Q ss_pred CcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 014001 204 EYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSV 245 (432)
Q Consensus 204 gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~ 245 (432)
|+||+-+|. -..+ + ..|++++++++++.
T Consensus 312 ~iDGfR~D~------~~~~----~----~~~~~~~~~~~~~~ 339 (605)
T TIGR02104 312 NIDGFRFDL------MGIH----D----IETMNEIRKALNKI 339 (605)
T ss_pred CCCEEEEec------hhcC----C----HHHHHHHHHHHHhh
Confidence 999999994 1221 1 23788888888764
No 61
>PRK12313 glycogen branching enzyme; Provisional
Probab=80.17 E-value=14 Score=40.65 Aligned_cols=89 Identities=20% Similarity=0.153 Sum_probs=56.6
Q ss_pred hHHHHHHHhCCCcEEeEEeeccCc-----------------------------hh--hcCCHHHHHHHHHHHHHHHHhcC
Q 014001 156 AGWLLELRKGDALVLPRVVLEAFP-----------------------------KE--LLRKKKLRDKAIDLILTECKEME 204 (432)
Q Consensus 156 ~~~l~~~~~~~~kv~P~v~~~g~~-----------------------------~~--~l~~~~~r~~~i~~iv~~l~~~g 204 (432)
+.+++++|+.|++|+.=++++..+ .. -..+++.|+-+++++.-++++++
T Consensus 223 k~lv~~~H~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 223 MYLVDALHQNGIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 567888888899988655543210 00 12468999999999999999999
Q ss_pred cCeEEeecccccc--c------CC-C-CCCHHHHHHHHHHHHHHHHHhhcc
Q 014001 205 YDGIVLESWSTWT--A------YG-I-LHDPELRNMALEFIKQLGNALHSV 245 (432)
Q Consensus 205 fDGIdiD~w~~~~--~------~e-~-~~~~~d~~~~~~fl~eL~~~L~~~ 245 (432)
+||+-+|.-...- . +. . ....++. .-..|++++++.+++.
T Consensus 303 iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~fl~~~~~~v~~~ 352 (633)
T PRK12313 303 LDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENL-EAIYFLQKLNEVVYLE 352 (633)
T ss_pred CcEEEEcChhhhhhcccccccCcCCcccCCCCCc-HHHHHHHHHHHHHHHH
Confidence 9999999311000 0 00 0 0000111 1257999999999875
No 62
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=79.79 E-value=16 Score=36.16 Aligned_cols=148 Identities=13% Similarity=0.098 Sum_probs=78.5
Q ss_pred hHHHHHHHhCCCcEEeEEeeccCchhhcCCHHHHHHHHHHHHHHHHhcC-cCeEEeecccccccCCCC--CCHHHHHHHH
Q 014001 156 AGWLLELRKGDALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEME-YDGIVLESWSTWTAYGIL--HDPELRNMAL 232 (432)
Q Consensus 156 ~~~l~~~~~~~~kv~P~v~~~g~~~~~l~~~~~r~~~i~~iv~~l~~~g-fDGIdiD~w~~~~~~e~~--~~~~d~~~~~ 232 (432)
.++++.+++.+..++|.+.-...++-.+ +.+.-+.+.+.|++-+++.+ +|||-|+. .+-. ..-.|-+ .
T Consensus 48 ~g~~~~a~~~g~e~vp~~~a~A~P~G~v-~~~aye~l~~eil~~l~~agp~Dgv~L~L------HGAmv~e~~~D~E--G 118 (292)
T PF07364_consen 48 GGFLDAAEAQGWEVVPLLWAAAEPGGPV-TREAYERLRDEILDRLRAAGPLDGVLLDL------HGAMVAEGYDDGE--G 118 (292)
T ss_dssp HHHHHHHHHTT-EEEEEEEEEE-SEE-B--HHHHHHHHHHHHHHHHHS---SEEEEEE-------S---BSS-SSHH--H
T ss_pred HHHHHHHHHCCCEEEeeEeeeecCCCcc-cHHHHHHHHHHHHHHHHhcCCcCEEEEec------cCcEeecCCCCch--H
Confidence 5677777777889999887665553333 34566788899999999986 99999995 1211 1112222 3
Q ss_pred HHHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCCCCCCCCCCchh-H
Q 014001 233 EFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKW-I 311 (432)
Q Consensus 233 ~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~aPl~w-v 311 (432)
.||+++|+.+.+ +..+.+++-+.. .--+.+.+.+|.++.. -. + |+.-..- =
T Consensus 119 ~Ll~rvR~~vGp---------~vpI~~tlDlHa-----------Nvs~~mv~~ad~~~~y--rt-y-----PH~D~~etg 170 (292)
T PF07364_consen 119 DLLRRVRAIVGP---------DVPIAATLDLHA-----------NVSPRMVEAADIIVGY--RT-Y-----PHIDMYETG 170 (292)
T ss_dssp HHHHHHHHHHTT---------TSEEEEEE-TT---------------HHHHHH-SEEEE------S-----S---HHHHH
T ss_pred HHHHHHHHHhCC---------CCeEEEEeCCCC-----------CccHHHHHhCCEEEEc--CC-C-----CccCHHHHH
Confidence 499999999985 566666665431 1235788899987653 21 1 2222211 1
Q ss_pred HHHHHHHhcCCCCCCCCCCCeEEEeeccccc
Q 014001 312 SFTLQLLLGSPGIGTRSLARKIFLGINFYGN 342 (432)
Q Consensus 312 ~~~l~~~~~~~~~~~~ip~~KivlGipfYG~ 342 (432)
+.+.+.+...-. .++.|-+.+.-+|+-..
T Consensus 171 ~~aa~ll~~~l~--g~~rp~~a~~~~P~l~~ 199 (292)
T PF07364_consen 171 ERAARLLLRALR--GEIRPVMALRRLPMLLP 199 (292)
T ss_dssp HHHHHHHHHTTT---SS--EEEEEEE-B--B
T ss_pred HHHHHHHHHHHc--CCCCceEEEecCCeEcc
Confidence 223333332110 45677888888887654
No 63
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=78.22 E-value=2.2 Score=37.69 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=26.5
Q ss_pred eeeEeeccCCCChhHHHHhccccCC---CCHHHHHHHcC
Q 014001 57 YCTKYSTRANRSATHMHQRGLVKTD---VNYQEILTENS 92 (432)
Q Consensus 57 ~~~~~~~~~gdt~~~i~~r~lv~~~---~~~~~il~~~~ 92 (432)
....|++++|||||+|+++ +. ..+..|.+.|.
T Consensus 94 ~~~~y~Vk~GDTL~~IA~~----~~g~~~~~~~I~~~N~ 128 (147)
T PRK11198 94 ESQFYTVKSGDTLSAIAKK----VYGNANKYNKIFEANK 128 (147)
T ss_pred CCeEEEECCCCCHHHHHHH----HcCChhhHHHHHHhhh
Confidence 3567999999999999999 53 45788988886
No 64
>PLN02960 alpha-amylase
Probab=75.58 E-value=20 Score=40.63 Aligned_cols=87 Identities=16% Similarity=0.114 Sum_probs=57.9
Q ss_pred hHHHHHHHhCCCcEEeEEeecc------------------------------Cchhh--cCCHHHHHHHHHHHHHHHHhc
Q 014001 156 AGWLLELRKGDALVLPRVVLEA------------------------------FPKEL--LRKKKLRDKAIDLILTECKEM 203 (432)
Q Consensus 156 ~~~l~~~~~~~~kv~P~v~~~g------------------------------~~~~~--l~~~~~r~~~i~~iv~~l~~~ 203 (432)
+.+|+++|+.|++|+.=++.+. |...+ +.+++.|+-+++++.-+++++
T Consensus 469 k~LVd~aH~~GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Ey 548 (897)
T PLN02960 469 KRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEY 548 (897)
T ss_pred HHHHHHHHHCCCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 5678888888888886554321 11112 467899999999999999999
Q ss_pred CcCeEEeeccccc-----------c---cCCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 014001 204 EYDGIVLESWSTW-----------T---AYGILHDPELRNMALEFIKQLGNALHSV 245 (432)
Q Consensus 204 gfDGIdiD~w~~~-----------~---~~e~~~~~~d~~~~~~fl~eL~~~L~~~ 245 (432)
++||+-+|.-... + .+.+ ...+. ....||++|.+.++..
T Consensus 549 hIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n--~~~d~-~Ai~fL~~lN~~v~~~ 601 (897)
T PLN02960 549 RVDGFQFHSLGSMLYTHNGFASFTGDLDEYCN--QYVDR-DALIYLILANEMLHQL 601 (897)
T ss_pred CCCceeecccceeeeeccCccccCCcccccCC--ccCCc-hHHHHHHHHHHHHHhh
Confidence 9999999943210 0 0011 01222 3567999999998864
No 65
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional
Probab=73.78 E-value=3.4 Score=43.46 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=30.8
Q ss_pred eeEeeccCCCChhHHHHhccccCCCCHHHHHHHcCCCC
Q 014001 58 CTKYSTRANRSATHMHQRGLVKTDVNYQEILTENSKVS 95 (432)
Q Consensus 58 ~~~~~~~~gdt~~~i~~r~lv~~~~~~~~il~~~~~~~ 95 (432)
..+|.|++|||+++|+++ ++++.++|.+.|+...
T Consensus 343 ~~~y~Vk~GDTL~sIA~r----~gvs~~~L~~~N~l~~ 376 (456)
T PRK10783 343 SRSYKVRSGDTLSGIASR----LNVSTKDLQQWNNLRG 376 (456)
T ss_pred ceEEEECCCCcHHHHHHH----HCcCHHHHHHHcCCCc
Confidence 457999999999999999 9999999999988654
No 66
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=73.13 E-value=4.7 Score=38.93 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=29.6
Q ss_pred EEEEeeccCCCCC----CCCCCCCchhHHHHHHHHhcCCCCCCCCCCCeEEE
Q 014001 288 GFSLMTYDFSGPH----NPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFL 335 (432)
Q Consensus 288 ~v~lMtYD~~~~~----~pgp~aPl~wv~~~l~~~~~~~~~~~~ip~~Kivl 335 (432)
.+++|+|||+|.| .|.-.-...-++.+.+++... .| +.++|+|
T Consensus 88 n~nv~~~DYSGyG~S~G~psE~n~y~Di~avye~Lr~~----~g-~~~~Iil 134 (258)
T KOG1552|consen 88 NCNVVSYDYSGYGRSSGKPSERNLYADIKAVYEWLRNR----YG-SPERIIL 134 (258)
T ss_pred cceEEEEecccccccCCCcccccchhhHHHHHHHHHhh----cC-CCceEEE
Confidence 5799999999863 343333445677888888753 45 6777765
No 67
>PRK14705 glycogen branching enzyme; Provisional
Probab=70.75 E-value=33 Score=40.59 Aligned_cols=89 Identities=17% Similarity=0.165 Sum_probs=58.0
Q ss_pred hHHHHHHHhCCCcEEeEEeeccCc-----------------------------hh--hcCCHHHHHHHHHHHHHHHHhcC
Q 014001 156 AGWLLELRKGDALVLPRVVLEAFP-----------------------------KE--LLRKKKLRDKAIDLILTECKEME 204 (432)
Q Consensus 156 ~~~l~~~~~~~~kv~P~v~~~g~~-----------------------------~~--~l~~~~~r~~~i~~iv~~l~~~g 204 (432)
+.+++++|+.|++|+.=++.+.++ .. -..+++.|+-+++++.-++++|+
T Consensus 818 k~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 818 RFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred HHHHHHHHHCCCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 567888888899888655443221 00 14578999999999999999999
Q ss_pred cCeEEeeccccc--ccC--------CCC-CCHHHHHHHHHHHHHHHHHhhcc
Q 014001 205 YDGIVLESWSTW--TAY--------GIL-HDPELRNMALEFIKQLGNALHSV 245 (432)
Q Consensus 205 fDGIdiD~w~~~--~~~--------e~~-~~~~d~~~~~~fl~eL~~~L~~~ 245 (432)
+||+-+|.-... -.| ++. ...++ ..-..|+++|.+.++..
T Consensus 898 iDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en-~~ai~fl~~ln~~v~~~ 948 (1224)
T PRK14705 898 IDGLRVDAVASMLYLDYSREEGQWRPNRFGGREN-LEAISFLQEVNATVYKT 948 (1224)
T ss_pred CCcEEEeehhhhhhcccccccccccccccCCccC-hHHHHHHHHHHHHHHHH
Confidence 999999952110 000 000 00111 12356999999999864
No 68
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=68.21 E-value=0.8 Score=38.02 Aligned_cols=59 Identities=10% Similarity=0.223 Sum_probs=42.2
Q ss_pred ccccccceeEeeeehhhhhhheeeeeeeEeeccCCCChhHHHHhccccCCCCHHHHHHHc
Q 014001 32 SASDRKLITIFVIFFIVIPTVSVLLYCTKYSTRANRSATHMHQRGLVKTDVNYQEILTEN 91 (432)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdt~~~i~~r~lv~~~~~~~~il~~~ 91 (432)
+..|++-+.|+.+++++|.++..+.+-+..-+|.|..+.+|..| |..++-..+++.+-|
T Consensus 55 sg~g~~~lffvglii~LivSLaLVsFvIFLiiQTgnkMddvSrR-L~aEgKdIdeLKKiN 113 (128)
T PF15145_consen 55 SGNGSRSLFFVGLIIVLIVSLALVSFVIFLIIQTGNKMDDVSRR-LTAEGKDIDELKKIN 113 (128)
T ss_pred CCCCceeehHHHHHHHHHHHHHHHHHHHHheeeccchHHHHHHH-HHhccCCHHHHHHHH
Confidence 34555555555555555555554445566788999999999988 888999999887766
No 69
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=66.64 E-value=67 Score=32.53 Aligned_cols=100 Identities=20% Similarity=0.321 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhcCcCeEEeec---------cccc-----ccCCCCCCHHHHHHHH-HHHHHHHHHhhcccccccc
Q 014001 187 KLRDKAIDLILTECKEMEYDGIVLES---------WSTW-----TAYGILHDPELRNMAL-EFIKQLGNALHSVNSVRNR 251 (432)
Q Consensus 187 ~~r~~~i~~iv~~l~~~gfDGIdiD~---------w~~~-----~~~e~~~~~~d~~~~~-~fl~eL~~~L~~~~~~~~~ 251 (432)
...+.|++.. ..+++-|||||+|.. .++. ..|+. +.+.|..|. +.|+++|+++...-
T Consensus 141 ~ii~~f~~aA-~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGG--slenR~r~~~eii~~vr~~vg~~~----- 212 (353)
T cd04735 141 DIIDAFGEAT-RRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGG--SLENRMRFPLAVVKAVQEVIDKHA----- 212 (353)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCC--cHHHHHHHHHHHHHHHHHHhcccc-----
Confidence 3456676654 446678999999973 1221 11222 345554433 67777777775100
Q ss_pred ccceEEEEEECCCCCCCCCCCCCCCCCH----HHHhcc-ccEEEEeeccCC
Q 014001 252 KQHLQLVYVIGPPHSEKFQPHDFGPVDL----QSLSDA-VDGFSLMTYDFS 297 (432)
Q Consensus 252 k~~~~lsvavpp~~~~~~~~~~~~~~d~----~~l~~~-vD~v~lMtYD~~ 297 (432)
..++.+.+-+.+..... +. .+..|. +.|.+. +|++.|-...++
T Consensus 213 ~~~~~v~~R~s~~~~~~--~g-~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~ 260 (353)
T cd04735 213 DKDFILGYRFSPEEPEE--PG-IRMEDTLALVDKLADKGLDYLHISLWDFD 260 (353)
T ss_pred CCCceEEEEECcccccC--CC-CCHHHHHHHHHHHHHcCCCEEEeccCccc
Confidence 02566777776632111 11 111222 233333 899999775544
No 70
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=62.24 E-value=31 Score=35.59 Aligned_cols=62 Identities=19% Similarity=0.152 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHH----HHHHHHHHHhhc
Q 014001 183 LRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMAL----EFIKQLGNALHS 244 (432)
Q Consensus 183 l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~----~fl~eL~~~L~~ 244 (432)
+++|+.|+-+.+.+.++++++|+|.|-+|+-...........++....++ +++++|+++++.
T Consensus 162 ~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~ 227 (394)
T PF02065_consen 162 LSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPD 227 (394)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 57899999999999999999999999999632221111111112233334 477777777653
No 71
>PRK03705 glycogen debranching enzyme; Provisional
Probab=61.18 E-value=28 Score=38.46 Aligned_cols=57 Identities=21% Similarity=0.170 Sum_probs=43.1
Q ss_pred hHHHHHHHhCCCcEEeEEeeccC--------------------------------c---hh-hcCCHHHHHHHHHHHHHH
Q 014001 156 AGWLLELRKGDALVLPRVVLEAF--------------------------------P---KE-LLRKKKLRDKAIDLILTE 199 (432)
Q Consensus 156 ~~~l~~~~~~~~kv~P~v~~~g~--------------------------------~---~~-~l~~~~~r~~~i~~iv~~ 199 (432)
+.+++++|+.|++|+.=++++.- + .. -..+|..|+-+++++.-+
T Consensus 245 k~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W 324 (658)
T PRK03705 245 RDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYW 324 (658)
T ss_pred HHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHH
Confidence 45777788889998876655310 0 00 124788999999999999
Q ss_pred HHhcCcCeEEeec
Q 014001 200 CKEMEYDGIVLES 212 (432)
Q Consensus 200 l~~~gfDGIdiD~ 212 (432)
++++|+||+-+|.
T Consensus 325 ~~e~gVDGFRfD~ 337 (658)
T PRK03705 325 VETCHVDGFRFDL 337 (658)
T ss_pred HHHhCCCEEEEEc
Confidence 9999999999995
No 72
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=60.93 E-value=34 Score=32.43 Aligned_cols=69 Identities=20% Similarity=0.297 Sum_probs=50.1
Q ss_pred hhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEE
Q 014001 181 ELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYV 260 (432)
Q Consensus 181 ~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsva 260 (432)
.+..+...++.+.+-++++.+....|=+-||.-+... ..++.++-.+|+..+|.-.. .++.+.++
T Consensus 100 ~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~------~~~~~~~vl~fm~~~r~l~d---------~gKvIilT 164 (235)
T COG2874 100 PVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFA------TYDSEDAVLNFMTFLRKLSD---------LGKVIILT 164 (235)
T ss_pred ccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHh------hcccHHHHHHHHHHHHHHHh---------CCCEEEEE
Confidence 4566778899999999999999999999999532221 11234455667777766554 37888899
Q ss_pred ECCC
Q 014001 261 IGPP 264 (432)
Q Consensus 261 vpp~ 264 (432)
+.|.
T Consensus 165 vhp~ 168 (235)
T COG2874 165 VHPS 168 (235)
T ss_pred eChh
Confidence 9885
No 73
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=58.61 E-value=40 Score=39.55 Aligned_cols=57 Identities=19% Similarity=0.160 Sum_probs=42.4
Q ss_pred hHHHHHHHhCCCcEEeEEeeccCc----------------------------hh-hcCCHHHHHHHHHHHHHHHHhcCcC
Q 014001 156 AGWLLELRKGDALVLPRVVLEAFP----------------------------KE-LLRKKKLRDKAIDLILTECKEMEYD 206 (432)
Q Consensus 156 ~~~l~~~~~~~~kv~P~v~~~g~~----------------------------~~-~l~~~~~r~~~i~~iv~~l~~~gfD 206 (432)
+.+|+++|++|++|+.=|+++.-. .. -..++..|+-+++++.-++++|++|
T Consensus 558 K~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VD 637 (1111)
T TIGR02102 558 KNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFKVD 637 (1111)
T ss_pred HHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCc
Confidence 456777888899988655553210 00 1235788999999999999999999
Q ss_pred eEEeec
Q 014001 207 GIVLES 212 (432)
Q Consensus 207 GIdiD~ 212 (432)
|+-+|.
T Consensus 638 GFRfDl 643 (1111)
T TIGR02102 638 GFRFDM 643 (1111)
T ss_pred EEEEec
Confidence 999995
No 74
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=57.44 E-value=25 Score=40.21 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 014001 184 RKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSV 245 (432)
Q Consensus 184 ~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~ 245 (432)
.++..|+-+++++.-++++|++||+-+|. ...+ ++ .|++++++++++.
T Consensus 469 e~~~Vrk~iiDsl~~W~~ey~VDGFRfDl------m~~~----~~----~f~~~~~~~l~~i 516 (898)
T TIGR02103 469 EHRMMAKLIVDSLVVWAKDYKVDGFRFDL------MGHH----PK----AQMLAAREAIKAL 516 (898)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEec------hhhC----CH----HHHHHHHHHHHHh
Confidence 35889999999999999999999999995 2222 22 3788888888765
No 75
>PLN03244 alpha-amylase; Provisional
Probab=53.61 E-value=97 Score=34.99 Aligned_cols=57 Identities=16% Similarity=0.013 Sum_probs=43.0
Q ss_pred hHHHHHHHhCCCcEEeEEeeccC------------------------------chh--hcCCHHHHHHHHHHHHHHHHhc
Q 014001 156 AGWLLELRKGDALVLPRVVLEAF------------------------------PKE--LLRKKKLRDKAIDLILTECKEM 203 (432)
Q Consensus 156 ~~~l~~~~~~~~kv~P~v~~~g~------------------------------~~~--~l~~~~~r~~~i~~iv~~l~~~ 203 (432)
+.+|+++|+.|+.|+.=++.+.+ ... -..+++.|+-+++++.-+++++
T Consensus 444 K~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yWleEy 523 (872)
T PLN03244 444 KRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWITEY 523 (872)
T ss_pred HHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHHHHHh
Confidence 56888889888888765543211 111 2346889999999999999999
Q ss_pred CcCeEEeec
Q 014001 204 EYDGIVLES 212 (432)
Q Consensus 204 gfDGIdiD~ 212 (432)
++||+-+|-
T Consensus 524 hIDGFRfDa 532 (872)
T PLN03244 524 QIDGFQFHS 532 (872)
T ss_pred CcCcceeec
Confidence 999999993
No 76
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=50.78 E-value=20 Score=28.26 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=27.3
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCcCeEEeec
Q 014001 182 LLRKKKLRDKAIDLILTECKEMEYDGIVLES 212 (432)
Q Consensus 182 ~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~ 212 (432)
.++.+..|..+++.+++.+..-.||||-+|-
T Consensus 45 ~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn 75 (79)
T PF14885_consen 45 VWSCPDYRRYWVDAVVEELQNSPWDGVFADN 75 (79)
T ss_pred cCCcchHHHHHHHHHHHHHhcCccceeeeec
Confidence 3444999999999999999988999999993
No 77
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=48.78 E-value=3.1e+02 Score=27.99 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhcCcCeEEeec
Q 014001 188 LRDKAIDLILTECKEMEYDGIVLES 212 (432)
Q Consensus 188 ~r~~~i~~iv~~l~~~gfDGIdiD~ 212 (432)
..+.|++. ...+++-|||||+|..
T Consensus 142 ii~~f~~A-A~~a~~aGfDgVeih~ 165 (361)
T cd04747 142 VIAAFARA-AADARRLGFDGIELHG 165 (361)
T ss_pred HHHHHHHH-HHHHHHcCCCEEEEec
Confidence 45566654 3455667999999973
No 78
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=47.87 E-value=2.1e+02 Score=29.13 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhcCcCeEEee
Q 014001 187 KLRDKAIDLILTECKEMEYDGIVLE 211 (432)
Q Consensus 187 ~~r~~~i~~iv~~l~~~gfDGIdiD 211 (432)
+..+.|++. ...+++-|||||.|.
T Consensus 156 ~ii~~f~~A-A~rA~~AGfDGVEIh 179 (362)
T PRK10605 156 GIVNDFRQA-IANAREAGFDLVELH 179 (362)
T ss_pred HHHHHHHHH-HHHHHHcCCCEEEEc
Confidence 345666654 456677899999996
No 79
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=47.67 E-value=50 Score=36.74 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcCeEEeec
Q 014001 184 RKKKLRDKAIDLILTECKEMEYDGIVLES 212 (432)
Q Consensus 184 ~~~~~r~~~i~~iv~~l~~~gfDGIdiD~ 212 (432)
.+|..|+-+++++.-+++++|+||+-+|.
T Consensus 314 ~~p~vr~~i~d~l~~W~~e~gIDGfR~D~ 342 (688)
T TIGR02100 314 SHPRVLQMVMDSLRYWVTEMHVDGFRFDL 342 (688)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEec
Confidence 46889999999999999999999999995
No 80
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=46.75 E-value=75 Score=30.31 Aligned_cols=67 Identities=18% Similarity=0.389 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCcCeEEe-ecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCC
Q 014001 194 DLILTECKEMEYDGIVL-ESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPH 272 (432)
Q Consensus 194 ~~iv~~l~~~gfDGIdi-D~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~ 272 (432)
+..++.+++.|.||+.+ |. .++ -+.++.+.+++ .++...+.++|.++
T Consensus 94 ~~fi~~~~~aG~~giiipDl-----------~~e-------e~~~~~~~~~~--------~g~~~i~~i~P~T~------ 141 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDL-----------PPE-------EAEEFREAAKE--------YGLDLIFLVAPTTP------ 141 (242)
T ss_pred HHHHHHHHHCCCcEEEECCC-----------CHH-------HHHHHHHHHHH--------cCCcEEEEeCCCCC------
Confidence 33455578889999999 41 222 23445555554 46778888888643
Q ss_pred CCCCCCHHHHhc-cccEEEEeecc
Q 014001 273 DFGPVDLQSLSD-AVDGFSLMTYD 295 (432)
Q Consensus 273 ~~~~~d~~~l~~-~vD~v~lMtYD 295 (432)
...++.+.+ ..|++.+||..
T Consensus 142 ---~~~i~~i~~~~~~~vy~~s~~ 162 (242)
T cd04724 142 ---DERIKKIAELASGFIYYVSRT 162 (242)
T ss_pred ---HHHHHHHHhhCCCCEEEEeCC
Confidence 234566777 78999999963
No 81
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=46.30 E-value=2e+02 Score=24.93 Aligned_cols=85 Identities=12% Similarity=0.120 Sum_probs=42.3
Q ss_pred CChHHHHHHHhCCCcEEeEEeeccCchhhcCCH-HHHHHHHHHHHHHHHhcCcCe-EEe--ecccccccCCCCCCHHHHH
Q 014001 154 ADAGWLLELRKGDALVLPRVVLEAFPKELLRKK-KLRDKAIDLILTECKEMEYDG-IVL--ESWSTWTAYGILHDPELRN 229 (432)
Q Consensus 154 ~d~~~l~~~~~~~~kv~P~v~~~g~~~~~l~~~-~~r~~~i~~iv~~l~~~gfDG-Idi--D~w~~~~~~e~~~~~~d~~ 229 (432)
+...|++.+++.|++++|....++....-.+.. +.=.+-.++.++.+++.||.- ..| |++ |.. .+.+-.+
T Consensus 39 Lt~~e~~~i~~~Gl~i~pIyq~~~~~~~~~~~~~~~G~~dA~~A~~~A~~lG~p~gt~IYfavD-----~d~-~~~~~~~ 112 (136)
T PF08924_consen 39 LTAGEVQDIRAAGLRIFPIYQGGGRETSDFTYGYAQGVADARDAVAAARALGFPAGTPIYFAVD-----YDA-TDAECDS 112 (136)
T ss_dssp --HHHHHHHHHTT-EEEEEE--------S-B--HHHHHHHHHHHHHHHHHTT--SS-EEEEE-------TS--B-HH---
T ss_pred CCHHHHHHHHHCCCEEEEEEecccccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEee-----cCC-Cchhhhh
Confidence 568899999999999999654432222222222 344566778888999999844 333 332 122 1334356
Q ss_pred HHHHHHHHHHHHhhc
Q 014001 230 MALEFIKQLGNALHS 244 (432)
Q Consensus 230 ~~~~fl~eL~~~L~~ 244 (432)
.-+.+++-+.++|+.
T Consensus 113 ~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 113 AILPYFRGWNSALGA 127 (136)
T ss_dssp ----HHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhh
Confidence 677899999999997
No 82
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=45.30 E-value=72 Score=31.00 Aligned_cols=86 Identities=15% Similarity=0.207 Sum_probs=53.1
Q ss_pred HHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCCC
Q 014001 196 ILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFG 275 (432)
Q Consensus 196 iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~ 275 (432)
-++.|++-|.||+-|-= . +.++ ..++.+.+++ .++.++..++|.++
T Consensus 111 F~~~~~~aGvdgviipD-------L---P~ee-------~~~~~~~~~~--------~gi~~I~lv~PtT~--------- 156 (263)
T CHL00200 111 FIKKISQAGVKGLIIPD-------L---PYEE-------SDYLISVCNL--------YNIELILLIAPTSS--------- 156 (263)
T ss_pred HHHHHHHcCCeEEEecC-------C---CHHH-------HHHHHHHHHH--------cCCCEEEEECCCCC---------
Confidence 34558889999999841 1 2233 2344455554 47788888888643
Q ss_pred CCCHHHHhcccc-EEEEeeccCCCCCCCCCCCCc-hhHHHHHHHHh
Q 014001 276 PVDLQSLSDAVD-GFSLMTYDFSGPHNPGPNAPL-KWISFTLQLLL 319 (432)
Q Consensus 276 ~~d~~~l~~~vD-~v~lMtYD~~~~~~pgp~aPl-~wv~~~l~~~~ 319 (432)
...+..+++.++ |+-+|+. ++.+|....+ .-+++.++.+.
T Consensus 157 ~eri~~i~~~a~gFIY~vS~----~GvTG~~~~~~~~~~~~i~~ir 198 (263)
T CHL00200 157 KSRIQKIARAAPGCIYLVST----TGVTGLKTELDKKLKKLIETIK 198 (263)
T ss_pred HHHHHHHHHhCCCcEEEEcC----CCCCCCCccccHHHHHHHHHHH
Confidence 246788999998 8888882 3345543332 23555555544
No 83
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=44.59 E-value=2.3e+02 Score=27.34 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=43.4
Q ss_pred HHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCC
Q 014001 195 LILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDF 274 (432)
Q Consensus 195 ~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~ 274 (432)
..++.+++-|.||+-+-- + ..++ ..++.+++++ .++.+...+.|.++
T Consensus 106 ~f~~~~~~aGvdgviipD-------l---p~ee-------~~~~~~~~~~--------~gl~~i~lv~P~T~-------- 152 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVAD-------L---PLEE-------SGDLVEAAKK--------HGVKPIFLVAPNAD-------- 152 (256)
T ss_pred HHHHHHHHcCCCEEEECC-------C---ChHH-------HHHHHHHHHH--------CCCcEEEEECCCCC--------
Confidence 335558889999988751 2 1222 2345555554 46777888888642
Q ss_pred CCCCHHHHhcccc-EEEEeec
Q 014001 275 GPVDLQSLSDAVD-GFSLMTY 294 (432)
Q Consensus 275 ~~~d~~~l~~~vD-~v~lMtY 294 (432)
...+..+.+.+| |+.+||-
T Consensus 153 -~eri~~i~~~~~gfiy~vs~ 172 (256)
T TIGR00262 153 -DERLKQIAEKSQGFVYLVSR 172 (256)
T ss_pred -HHHHHHHHHhCCCCEEEEEC
Confidence 235678888898 9999995
No 84
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=43.52 E-value=49 Score=37.12 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=56.8
Q ss_pred hHHHHHHHhCCCcEEeEEeecc-----------C-------------------chhh--cCCHHHHHHHHHHHHHHHHhc
Q 014001 156 AGWLLELRKGDALVLPRVVLEA-----------F-------------------PKEL--LRKKKLRDKAIDLILTECKEM 203 (432)
Q Consensus 156 ~~~l~~~~~~~~kv~P~v~~~g-----------~-------------------~~~~--l~~~~~r~~~i~~iv~~l~~~ 203 (432)
+.+++++|+.|++|+.=++.+. + .... ..+++.|+-+++++.-++++|
T Consensus 303 k~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey 382 (758)
T PLN02447 303 KYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEY 382 (758)
T ss_pred HHHHHHHHHCCCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHh
Confidence 5577888888888875544321 1 0111 246789999999999999999
Q ss_pred CcCeEEeecccccc--------cCCC-----CCCHHHHHHHHHHHHHHHHHhhcc
Q 014001 204 EYDGIVLESWSTWT--------AYGI-----LHDPELRNMALEFIKQLGNALHSV 245 (432)
Q Consensus 204 gfDGIdiD~w~~~~--------~~e~-----~~~~~d~~~~~~fl~eL~~~L~~~ 245 (432)
++||+-+|--...- .|.. ....+|.+ -..||+++.+.+|..
T Consensus 383 ~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~-a~~fL~~~N~~i~~~ 436 (758)
T PLN02447 383 KFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVD-AVVYLMLANDLLHGL 436 (758)
T ss_pred CcccccccchhhhhccccCcccccccCcccccCCccChH-HHHHHHHHHHHHHHh
Confidence 99999999422110 0100 00112333 356888888888875
No 85
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=43.29 E-value=25 Score=35.48 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHcCC-EEEEEEc
Q 014001 397 PSLISISMRLEEAKLWGT-GIAIWEI 421 (432)
Q Consensus 397 dd~~Si~~K~~la~~~gl-Gi~iW~L 421 (432)
.|++.++..+++|+++|+ |..+|--
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Y 80 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHY 80 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEee
Confidence 489999999999999999 9998853
No 86
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=43.16 E-value=58 Score=33.47 Aligned_cols=58 Identities=19% Similarity=0.143 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHhcCcCeEEeecccc-------c--ccCCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 014001 186 KKLRDKAIDLILTECKEMEYDGIVLESWST-------W--TAYGILHDPELRNMALEFIKQLGNALHSV 245 (432)
Q Consensus 186 ~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~-------~--~~~e~~~~~~d~~~~~~fl~eL~~~L~~~ 245 (432)
++..+.|+.=|++.++.+.=.||.|+.-+| | +..|+ .+-+.+....||+.|+.+|++.
T Consensus 150 ~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W~~~~QEG--~~~~~~e~a~vI~~L~~~L~~~ 216 (384)
T PF14587_consen 150 PDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNWAGGSQEG--CHFTNEEQADVIRALDKALKKR 216 (384)
T ss_dssp TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-GG--SS-B------HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCCCCCCcCC--CCCCHHHHHHHHHHHHHHHHhc
Confidence 456888888888888888778888885432 2 12333 2334455678999999999974
No 87
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=42.84 E-value=1.3e+02 Score=30.32 Aligned_cols=95 Identities=17% Similarity=0.210 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHhcCcCeEEeecc---------ccc-----ccCCCCCCHHHH-HHHHHHHHHHHHHhhcccccccc
Q 014001 187 KLRDKAIDLILTECKEMEYDGIVLESW---------STW-----TAYGILHDPELR-NMALEFIKQLGNALHSVNSVRNR 251 (432)
Q Consensus 187 ~~r~~~i~~iv~~l~~~gfDGIdiD~w---------~~~-----~~~e~~~~~~d~-~~~~~fl~eL~~~L~~~~~~~~~ 251 (432)
+..+.|++.. ..+++-|||||+|..= ++. ..|+. +.+.| .-..+.|+.+|++...
T Consensus 138 ~ii~~f~~AA-~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGG--slenR~r~~~eiv~~ir~~vg~------- 207 (343)
T cd04734 138 EIIAAFADAA-RRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGG--SLENRMRFLLEVLAAVRAAVGP------- 207 (343)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCC--CHHHHhHHHHHHHHHHHHHcCC-------
Confidence 3456666554 3556689999999851 110 11221 23444 3344667777776643
Q ss_pred ccceEEEEEECCCCCCCCCCCC-CCCCCH-HHHhcc--ccEEEEeec
Q 014001 252 KQHLQLVYVIGPPHSEKFQPHD-FGPVDL-QSLSDA--VDGFSLMTY 294 (432)
Q Consensus 252 k~~~~lsvavpp~~~~~~~~~~-~~~~d~-~~l~~~--vD~v~lMtY 294 (432)
.+.+.+-+.+..... .+.. .+..++ +.|.+. +|++.|-.-
T Consensus 208 --~~~v~iRl~~~~~~~-~G~~~~e~~~~~~~l~~~G~vd~i~vs~g 251 (343)
T cd04734 208 --DFIVGIRISGDEDTE-GGLSPDEALEIAARLAAEGLIDYVNVSAG 251 (343)
T ss_pred --CCeEEEEeehhhccC-CCCCHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 566666676532110 0000 011122 344443 799998543
No 88
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=42.57 E-value=52 Score=30.60 Aligned_cols=93 Identities=20% Similarity=0.200 Sum_probs=54.2
Q ss_pred ChHHHHHHHhC-CCcEEeEEeeccCchhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHH
Q 014001 155 DAGWLLELRKG-DALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALE 233 (432)
Q Consensus 155 d~~~l~~~~~~-~~kv~P~v~~~g~~~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~ 233 (432)
.+.+++++++. ++.+= + +-|+.+|. ++++ .+.+.|.|-|.+-+| .. + ....
T Consensus 45 g~~~i~~i~~~~~~~~D--v------HLMv~~P~---~~i~----~~~~~g~~~i~~H~E-------~~---~---~~~~ 96 (201)
T PF00834_consen 45 GPDIIKAIRKITDLPLD--V------HLMVENPE---RYIE----EFAEAGADYITFHAE-------AT---E---DPKE 96 (201)
T ss_dssp -HHHHHHHHTTSSSEEE--E------EEESSSGG---GHHH----HHHHHT-SEEEEEGG-------GT---T---THHH
T ss_pred CHHHHHHHhhcCCCcEE--E------EeeeccHH---HHHH----HHHhcCCCEEEEccc-------ch---h---CHHH
Confidence 46788888762 22221 2 23566663 2443 456669999999853 21 1 1223
Q ss_pred HHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccC
Q 014001 234 FIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDF 296 (432)
Q Consensus 234 fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~ 296 (432)
+++.+|+ .+...-+++-|.++ -..++.+.+.+|++.+||-+-
T Consensus 97 ~i~~ik~------------~g~k~GialnP~T~---------~~~~~~~l~~vD~VlvMsV~P 138 (201)
T PF00834_consen 97 TIKYIKE------------AGIKAGIALNPETP---------VEELEPYLDQVDMVLVMSVEP 138 (201)
T ss_dssp HHHHHHH------------TTSEEEEEE-TTS----------GGGGTTTGCCSSEEEEESS-T
T ss_pred HHHHHHH------------hCCCEEEEEECCCC---------chHHHHHhhhcCEEEEEEecC
Confidence 5555554 25778889988653 234566788999999999763
No 89
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=42.14 E-value=84 Score=30.85 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCcCeEEeeccccc---ccCCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 014001 192 AIDLILTECKEMEYDGIVLESWSTW---TAYGILHDPELRNMALEFIKQLGNALHSV 245 (432)
Q Consensus 192 ~i~~iv~~l~~~gfDGIdiD~w~~~---~~~e~~~~~~d~~~~~~fl~eL~~~L~~~ 245 (432)
.+.+-.+-+.+.|||||-||+-..+ ..+..............|+.+|++..++.
T Consensus 127 ii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~ 183 (300)
T COG2342 127 IIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAA 183 (300)
T ss_pred HHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhc
Confidence 3445566677889999999964322 11111123345566788999999999875
No 90
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=41.60 E-value=93 Score=28.94 Aligned_cols=75 Identities=13% Similarity=0.206 Sum_probs=50.4
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEE
Q 014001 180 KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVY 259 (432)
Q Consensus 180 ~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsv 259 (432)
+-|+.+|+. .| .-+.+-|.+.+.+- +|.. ++ ..+|-+.+++ .+..+-+
T Consensus 70 HmMV~~Peq---~V----~~~a~agas~~tfH-------~E~~---q~-------~~~lv~~ir~--------~Gmk~G~ 117 (224)
T KOG3111|consen 70 HMMVENPEQ---WV----DQMAKAGASLFTFH-------YEAT---QK-------PAELVEKIRE--------KGMKVGL 117 (224)
T ss_pred EEeecCHHH---HH----HHHHhcCcceEEEE-------Eeec---cC-------HHHHHHHHHH--------cCCeeeE
Confidence 456777753 33 33445688888888 3532 11 3344444544 4788899
Q ss_pred EECCCCCCCCCCCCCCCCCHHHHhccccEEEEeecc
Q 014001 260 VIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYD 295 (432)
Q Consensus 260 avpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD 295 (432)
++-|.++ ..++..+++.+|.+.+||-.
T Consensus 118 alkPgT~---------Ve~~~~~~~~~D~vLvMtVe 144 (224)
T KOG3111|consen 118 ALKPGTP---------VEDLEPLAEHVDMVLVMTVE 144 (224)
T ss_pred EeCCCCc---------HHHHHHhhccccEEEEEEec
Confidence 9998753 35778888999999999986
No 91
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=41.04 E-value=93 Score=29.64 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=48.8
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccce--EE
Q 014001 180 KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHL--QL 257 (432)
Q Consensus 180 ~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~--~l 257 (432)
+-|+.+|. ++++ .+.+.|.|-|-+-. |.. .....+++.+++. +. ..
T Consensus 74 HLMv~~P~---~~i~----~~~~aGad~It~H~-------Ea~------~~~~~~l~~Ik~~------------g~~~ka 121 (228)
T PRK08091 74 HLMVRDQF---EVAK----ACVAAGADIVTLQV-------EQT------HDLALTIEWLAKQ------------KTTVLI 121 (228)
T ss_pred EeccCCHH---HHHH----HHHHhCCCEEEEcc-------cCc------ccHHHHHHHHHHC------------CCCceE
Confidence 34667764 3443 35556999999984 431 1123355555442 44 67
Q ss_pred EEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccC
Q 014001 258 VYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDF 296 (432)
Q Consensus 258 svavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~ 296 (432)
-+++-|.++ ...+..+.+.+|++.+||-+=
T Consensus 122 GlalnP~Tp---------~~~i~~~l~~vD~VLiMtV~P 151 (228)
T PRK08091 122 GLCLCPETP---------ISLLEPYLDQIDLIQILTLDP 151 (228)
T ss_pred EEEECCCCC---------HHHHHHHHhhcCEEEEEEECC
Confidence 788888753 245677888999999999863
No 92
>PRK09505 malS alpha-amylase; Reviewed
Probab=40.25 E-value=59 Score=36.14 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=27.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCcCeEEeec
Q 014001 182 LLRKKKLRDKAIDLILTECKEMEYDGIVLES 212 (432)
Q Consensus 182 ~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~ 212 (432)
.+.+++.|+.+++.+...++++|+||+-||.
T Consensus 432 ~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDa 462 (683)
T PRK09505 432 AIDGYTPRDYLTHWLSQWVRDYGIDGFRVDT 462 (683)
T ss_pred cccCHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 3467899999999999999999999999995
No 93
>PRK08005 epimerase; Validated
Probab=39.23 E-value=94 Score=29.18 Aligned_cols=94 Identities=9% Similarity=0.090 Sum_probs=56.5
Q ss_pred ChHHHHHHHhCCCcEEeEEeeccCchhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHH
Q 014001 155 DAGWLLELRKGDALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEF 234 (432)
Q Consensus 155 d~~~l~~~~~~~~kv~P~v~~~g~~~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~f 234 (432)
.+..++.+++. +. +| +-+ +-|+.+|+. +++ .+.+.|.|-|-+-+ |.. .....+
T Consensus 46 G~~~i~~l~~~-t~-~~-~Dv----HLMv~~P~~---~i~----~~~~~gad~It~H~-------Ea~------~~~~~~ 98 (210)
T PRK08005 46 GMKTIQAVAQQ-TR-HP-LSF----HLMVSSPQR---WLP----WLAAIRPGWIFIHA-------ESV------QNPSEI 98 (210)
T ss_pred CHHHHHHHHhc-CC-CC-eEE----EeccCCHHH---HHH----HHHHhCCCEEEEcc-------cCc------cCHHHH
Confidence 46677777652 11 11 111 346777753 443 45557899999984 421 112234
Q ss_pred HHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccC
Q 014001 235 IKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDF 296 (432)
Q Consensus 235 l~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~ 296 (432)
++.+|+ .|...-+|+-|.++ ...+..+.+.+|++.+||-+-
T Consensus 99 l~~Ik~------------~G~k~GlAlnP~Tp---------~~~i~~~l~~vD~VlvMsV~P 139 (210)
T PRK08005 99 LADIRA------------IGAKAGLALNPATP---------LLPYRYLALQLDALMIMTSEP 139 (210)
T ss_pred HHHHHH------------cCCcEEEEECCCCC---------HHHHHHHHHhcCEEEEEEecC
Confidence 554443 25667888988653 234567788999999999863
No 94
>PRK11649 putative peptidase; Provisional
Probab=39.07 E-value=30 Score=36.24 Aligned_cols=28 Identities=7% Similarity=0.215 Sum_probs=25.3
Q ss_pred eEeeccCCCChhHHHHhccccCCCCHHHHHHH
Q 014001 59 TKYSTRANRSATHMHQRGLVKTDVNYQEILTE 90 (432)
Q Consensus 59 ~~~~~~~gdt~~~i~~r~lv~~~~~~~~il~~ 90 (432)
..|++++||||.+|.+| .|++..++.+-
T Consensus 96 ~~~~Vk~GDTl~~iL~r----~Gi~~~di~~l 123 (439)
T PRK11649 96 HEYVVSTGDTLSSILNQ----YGIDMSDISQL 123 (439)
T ss_pred EEEEeCCCCCHHHHHHH----cCCCHHHHHHH
Confidence 58999999999999999 99998888655
No 95
>PLN02803 beta-amylase
Probab=38.25 E-value=53 Score=35.09 Aligned_cols=46 Identities=11% Similarity=0.227 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCcCeEEeecccccccCCCC-CCHHHHHHHHHHHHHHHHH
Q 014001 194 DLILTECKEMEYDGIVLESWSTWTAYGIL-HDPELRNMALEFIKQLGNA 241 (432)
Q Consensus 194 ~~iv~~l~~~gfDGIdiD~w~~~~~~e~~-~~~~d~~~~~~fl~eL~~~ 241 (432)
+.=+..+|..|.|||.+|.| |+.-|.- +..-|...|.++++-++++
T Consensus 110 ~~~L~~LK~~GVdGVmvDVW--WGiVE~~~p~~YdWsgY~~l~~mvr~~ 156 (548)
T PLN02803 110 NASLMALRSAGVEGVMVDAW--WGLVEKDGPMKYNWEGYAELVQMVQKH 156 (548)
T ss_pred HHHHHHHHHcCCCEEEEEee--eeeeccCCCCcCCcHHHHHHHHHHHHc
Confidence 33345578899999999987 2222321 1223667777777666653
No 96
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=37.80 E-value=1.5e+02 Score=26.92 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=38.4
Q ss_pred HHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCCC
Q 014001 196 ILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFG 275 (432)
Q Consensus 196 iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~ 275 (432)
.++.+.+.|.|||.+-- +. +++ ...+++.+++. +..+.+.+.+.+.
T Consensus 71 ~~~~~~~~gadgv~vh~-------~~---~~~---~~~~~~~~~~~------------g~~~~~~~~~~t~--------- 116 (210)
T TIGR01163 71 YIEDFAEAGADIITVHP-------EA---SEH---IHRLLQLIKDL------------GAKAGIVLNPATP--------- 116 (210)
T ss_pred HHHHHHHcCCCEEEEcc-------CC---chh---HHHHHHHHHHc------------CCcEEEEECCCCC---------
Confidence 36777799999988862 21 111 23344433332 2233444544321
Q ss_pred CCCHHHHhccccEEEEeeccC
Q 014001 276 PVDLQSLSDAVDGFSLMTYDF 296 (432)
Q Consensus 276 ~~d~~~l~~~vD~v~lMtYD~ 296 (432)
...+.++...+|++.+|+.+-
T Consensus 117 ~e~~~~~~~~~d~i~~~~~~~ 137 (210)
T TIGR01163 117 LEFLEYVLPDVDLVLLMSVNP 137 (210)
T ss_pred HHHHHHHHhhCCEEEEEEEcC
Confidence 234667777799999999764
No 97
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=37.28 E-value=51 Score=34.04 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCcCeEEeecccccccCCCC-CCHHHHHHHHHHHHHHHHH
Q 014001 192 AIDLILTECKEMEYDGIVLESWSTWTAYGIL-HDPELRNMALEFIKQLGNA 241 (432)
Q Consensus 192 ~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~-~~~~d~~~~~~fl~eL~~~ 241 (432)
-+++-++.+|..|.|||.+|.| |+.-|.. +..-|...|.++.+-++++
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvW--WGiVE~~~p~~ydWs~Y~~l~~~vr~~ 65 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVW--WGIVEGEGPQQYDWSGYRELFEMVRDA 65 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEE--HHHHTGSSTTB---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCcEEEEEeE--eeeeccCCCCccCcHHHHHHHHHHHHc
Confidence 3445566788999999999987 3322321 1234667777777776653
No 98
>PLN02161 beta-amylase
Probab=36.91 E-value=57 Score=34.67 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCcCeEEeecccccccCCC-CCCHHHHHHHHHHHHHHHHH
Q 014001 193 IDLILTECKEMEYDGIVLESWSTWTAYGI-LHDPELRNMALEFIKQLGNA 241 (432)
Q Consensus 193 i~~iv~~l~~~gfDGIdiD~w~~~~~~e~-~~~~~d~~~~~~fl~eL~~~ 241 (432)
++.=+..+|..|.|||.+|.| |+.-|. -+..-+...|.++++-++++
T Consensus 119 l~~~L~~LK~~GVdGVmvDVW--WGiVE~~~p~~YdWsgY~~l~~mvr~~ 166 (531)
T PLN02161 119 LTVSLKALKLAGVHGIAVEVW--WGIVERFSPLEFKWSLYEELFRLISEA 166 (531)
T ss_pred HHHHHHHHHHcCCCEEEEEee--eeeeecCCCCcCCcHHHHHHHHHHHHc
Confidence 344445578899999999987 222222 01223566777777666653
No 99
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=36.40 E-value=82 Score=27.42 Aligned_cols=68 Identities=18% Similarity=0.137 Sum_probs=49.0
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEEC
Q 014001 183 LRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIG 262 (432)
Q Consensus 183 l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavp 262 (432)
.-+|+.-..+.+.+++++++.+-.-|.||- .|++.-..+-+....||..|++..-.. +-.|.+++.
T Consensus 54 ~I~Pt~L~~l~~~i~~fl~~~~~~vViiD~------lEYL~l~NgF~~v~KFL~~LkD~~~~~--------~~~lIl~~~ 119 (136)
T PF05763_consen 54 AISPTNLHKLLDTIVRFLKENGNGVVIIDG------LEYLILENGFESVLKFLASLKDYALLN--------NGTLILVVD 119 (136)
T ss_pred ccCchhhHHHHHHHHHHHHhCCCcEEEEec------HHHHHHHcCHHHHHHHHHHhHHHeecc--------CCEEEEEEC
Confidence 346778889999999999996666788884 454434456677888999999877542 334666676
Q ss_pred CC
Q 014001 263 PP 264 (432)
Q Consensus 263 p~ 264 (432)
|.
T Consensus 120 ~~ 121 (136)
T PF05763_consen 120 PE 121 (136)
T ss_pred hh
Confidence 63
No 100
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=36.02 E-value=66 Score=34.01 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcCeEEeec
Q 014001 184 RKKKLRDKAIDLILTECKEMEYDGIVLES 212 (432)
Q Consensus 184 ~~~~~r~~~i~~iv~~l~~~gfDGIdiD~ 212 (432)
.+|+.|+.+++.+.-+++++|+||+-||.
T Consensus 206 ~np~V~~~l~~~~~~w~~~~giDGfRlDa 234 (479)
T PRK09441 206 RHPEVREELKYWAKWYMETTGFDGFRLDA 234 (479)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEhh
Confidence 57999999998776666679999999995
No 101
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=35.96 E-value=1.1e+02 Score=28.89 Aligned_cols=95 Identities=16% Similarity=0.111 Sum_probs=58.1
Q ss_pred ChHHHHHHHhCCCcEEeEEeeccCchhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHH
Q 014001 155 DAGWLLELRKGDALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEF 234 (432)
Q Consensus 155 d~~~l~~~~~~~~kv~P~v~~~g~~~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~f 234 (432)
.+..++.+|+...+ +| +-+ +-|+.+|. ++++. +.+.|.|=|.+-. |.. .....+
T Consensus 45 g~~~i~~i~~~~~~-~~-~dv----HLMv~~p~---~~i~~----~~~~gad~i~~H~-------Ea~------~~~~~~ 98 (220)
T PRK08883 45 GAPICKALRDYGIT-AP-IDV----HLMVKPVD---RIIPD----FAKAGASMITFHV-------EAS------EHVDRT 98 (220)
T ss_pred CHHHHHHHHHhCCC-CC-EEE----EeccCCHH---HHHHH----HHHhCCCEEEEcc-------cCc------ccHHHH
Confidence 46778888762111 11 111 34667764 35443 4456899888884 421 123345
Q ss_pred HHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccC
Q 014001 235 IKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDF 296 (432)
Q Consensus 235 l~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~ 296 (432)
++.+|+ .|....+++.|.++ ...+..+.+.+|.|.+||=+-
T Consensus 99 l~~ik~------------~g~k~GlalnP~Tp---------~~~i~~~l~~~D~vlvMtV~P 139 (220)
T PRK08883 99 LQLIKE------------HGCQAGVVLNPATP---------LHHLEYIMDKVDLILLMSVNP 139 (220)
T ss_pred HHHHHH------------cCCcEEEEeCCCCC---------HHHHHHHHHhCCeEEEEEecC
Confidence 555554 25667888988753 346778889999999999864
No 102
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=35.66 E-value=92 Score=29.70 Aligned_cols=47 Identities=23% Similarity=0.361 Sum_probs=33.8
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 014001 183 LRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHS 244 (432)
Q Consensus 183 l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~ 244 (432)
..+++.|+.+++ ++++..++++||+-+|. ...+ .. .|+++++++++.
T Consensus 141 ~~n~~v~~~i~~-~~~~w~~~giDGfR~D~------~~~~-~~-------~~~~~~~~~~~~ 187 (316)
T PF00128_consen 141 YENPEVREYIID-VLKFWIEEGIDGFRLDA------AKHI-PK-------EFWKEFRDEVKE 187 (316)
T ss_dssp TTSHHHHHHHHH-HHHHHHHTTESEEEETT------GGGS-SH-------HHHHHHHHHHHH
T ss_pred hhhhhhhhhhcc-cccchhhceEeEEEEcc------cccc-ch-------hhHHHHhhhhhh
Confidence 357888998888 77777778899999995 2222 22 577777777765
No 103
>PLN00197 beta-amylase; Provisional
Probab=35.65 E-value=61 Score=34.76 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCcCeEEeecccccccCCC-CCCHHHHHHHHHHHHHHHHH
Q 014001 194 DLILTECKEMEYDGIVLESWSTWTAYGI-LHDPELRNMALEFIKQLGNA 241 (432)
Q Consensus 194 ~~iv~~l~~~gfDGIdiD~w~~~~~~e~-~~~~~d~~~~~~fl~eL~~~ 241 (432)
..=+..+|..|.|||.+|.| |+.-|. -+..-+...|.++++-++++
T Consensus 130 ~~~L~~LK~~GVdGVmvDvW--WGiVE~~~p~~YdWsgY~~L~~mvr~~ 176 (573)
T PLN00197 130 KASLQALKSAGVEGIMMDVW--WGLVERESPGVYNWGGYNELLEMAKRH 176 (573)
T ss_pred HHHHHHHHHcCCCEEEEeee--eeeeccCCCCcCCcHHHHHHHHHHHHc
Confidence 33345578899999999987 222232 01223667777777666653
No 104
>PLN02705 beta-amylase
Probab=35.50 E-value=58 Score=35.37 Aligned_cols=45 Identities=18% Similarity=0.328 Sum_probs=27.7
Q ss_pred HHHHHHHhcCcCeEEeecccccccCCCC-CCHHHHHHHHHHHHHHHHH
Q 014001 195 LILTECKEMEYDGIVLESWSTWTAYGIL-HDPELRNMALEFIKQLGNA 241 (432)
Q Consensus 195 ~iv~~l~~~gfDGIdiD~w~~~~~~e~~-~~~~d~~~~~~fl~eL~~~ 241 (432)
.=+..+|..|.|||.+|.| |+.-|.- +..-+...|.+|+.-++++
T Consensus 272 a~L~aLK~aGVdGVmvDVW--WGiVE~~~P~~YdWsgY~~L~~mvr~~ 317 (681)
T PLN02705 272 QELSHMKSLNVDGVVVDCW--WGIVEGWNPQKYVWSGYRELFNIIREF 317 (681)
T ss_pred HHHHHHHHcCCCEEEEeee--eeEeecCCCCcCCcHHHHHHHHHHHHc
Confidence 3344568899999999987 3222320 1223666777777666653
No 105
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=35.49 E-value=88 Score=35.33 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=67.2
Q ss_pred EEEEcCCCCCCchhhhhcCCCCcEEEEEEEEeecCC-eEEEecCCCCCChHHHHHHHh--CCCcEEeEEeec-cCchhhc
Q 014001 108 LAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQG-TSLILEGRHNADAGWLLELRK--GDALVLPRVVLE-AFPKELL 183 (432)
Q Consensus 108 lgY~~~w~~~gy~~~~~~~~~lT~isp~w~~i~~~g-~~~~~~g~~d~d~~~l~~~~~--~~~kv~P~v~~~-g~~~~~l 183 (432)
.||-.-|++.++-...... .+.+...+...... ..+.+.|.. ..+.++.... +..-.+|.-++| .|.+.
T Consensus 201 ~gyg~~~~n~~~~~fd~~~---~~~~~~~~~~e~~~ldyyv~~G~~--~~~vi~~yt~lTGkp~l~P~Wa~G~~~~~~-- 273 (772)
T COG1501 201 RGYGLFVDNSAYGSFDVGS---EEYSYVQFSVEGGQLDYYVIAGPT--PKDVLEKYTDLTGKPPLPPKWALGWLWTSR-- 273 (772)
T ss_pred cceEEEEECCCceEEEcCC---cceEEEEEEecCCcEEEEEEeCCC--HHHHHHHHHHhhCCCCCCCceecCCCceec--
Confidence 4555555554333222211 44444433333211 233445542 2456665544 667789999998 44321
Q ss_pred CCHHHHHHHHHHHHHHHHhcC--cCeEEeecc--c-ccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEE
Q 014001 184 RKKKLRDKAIDLILTECKEME--YDGIVLESW--S-TWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLV 258 (432)
Q Consensus 184 ~~~~~r~~~i~~iv~~l~~~g--fDGIdiD~w--~-~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~ls 258 (432)
+....+.-+.+.++.+++.+ +|++.||++ . .|..|.. ++..-.+- ++|-+.||+ ++..|+
T Consensus 274 -~~~~~e~~v~~~i~~~~~~~IP~d~~~lD~~~~~~~~~~F~w--d~~~FP~p----k~mi~~l~~--------~Gikl~ 338 (772)
T COG1501 274 -YTYYDEDEVLEFIDEMRERDIPLDVFVLDIDFWMDNWGDFTW--DPDRFPDP----KQMIAELHE--------KGIKLI 338 (772)
T ss_pred -cccccHHHHHHHHhhcccccCcceEEEEeehhhhccccceEE--CcccCCCH----HHHHHHHHh--------cCceEE
Confidence 11122333445555576664 899999985 2 2222221 11100001 134455555 478888
Q ss_pred EEECCCC
Q 014001 259 YVIGPPH 265 (432)
Q Consensus 259 vavpp~~ 265 (432)
+.+-|..
T Consensus 339 ~~i~P~i 345 (772)
T COG1501 339 VIINPYI 345 (772)
T ss_pred EEecccc
Confidence 8888864
No 106
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=34.99 E-value=1.1e+02 Score=28.91 Aligned_cols=96 Identities=13% Similarity=0.060 Sum_probs=56.8
Q ss_pred ChHHHHHHHhCCCcEEeEEeeccCchhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHH
Q 014001 155 DAGWLLELRKGDALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEF 234 (432)
Q Consensus 155 d~~~l~~~~~~~~kv~P~v~~~g~~~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~f 234 (432)
.+..++.+|+...+ +| +-+ +-|+.+|. ++++. +.+.|.|=|-+-. |.. .....+
T Consensus 49 g~~~i~~lr~~~~~-~~-~dv----HLMv~~P~---~~i~~----~~~~gad~I~~H~-------Ea~------~~~~~~ 102 (223)
T PRK08745 49 GPMVCQALRKHGIT-AP-IDV----HLMVEPVD---RIVPD----FADAGATTISFHP-------EAS------RHVHRT 102 (223)
T ss_pred CHHHHHHHHhhCCC-CC-EEE----EeccCCHH---HHHHH----HHHhCCCEEEEcc-------cCc------ccHHHH
Confidence 45677777652111 11 111 34666764 34433 4456999888884 421 113345
Q ss_pred HHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCC
Q 014001 235 IKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFS 297 (432)
Q Consensus 235 l~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~ 297 (432)
++.+|+. |...-+++-|.++ ...+..+.+.+|.|.+||-+-.
T Consensus 103 l~~Ir~~------------g~k~GlalnP~T~---------~~~i~~~l~~vD~VlvMtV~PG 144 (223)
T PRK08745 103 IQLIKSH------------GCQAGLVLNPATP---------VDILDWVLPELDLVLVMSVNPG 144 (223)
T ss_pred HHHHHHC------------CCceeEEeCCCCC---------HHHHHHHHhhcCEEEEEEECCC
Confidence 5555542 5567788888653 2456778899999999998643
No 107
>PRK10785 maltodextrin glucosidase; Provisional
Probab=34.67 E-value=55 Score=35.75 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=36.2
Q ss_pred CCHHHHHHHHH---HHHH-HHHh-cCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 014001 184 RKKKLRDKAID---LILT-ECKE-MEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSV 245 (432)
Q Consensus 184 ~~~~~r~~~i~---~iv~-~l~~-~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~ 245 (432)
.+|+.|+.+++ +++. .+++ +|.||.-||.- ..+........-..|++++++++++.
T Consensus 303 ~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva------~~v~~~~~~~~~~~f~~~~~~~vk~~ 363 (598)
T PRK10785 303 QSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVV------HMLGEGGGARNNLQHVAGITQAAKEE 363 (598)
T ss_pred CCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecH------hHhccccCccccHHHHHHHHHHHHhh
Confidence 57899999996 3554 5665 79999999951 11100000111246999999999875
No 108
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=33.63 E-value=2.3e+02 Score=29.03 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=56.2
Q ss_pred CCCcEEEEEEEEeecCCeEEEecCCCCCChHHHHHHHhCCCcEEeEEee-ccCc----hhhcC-----CHHHHHHHHHHH
Q 014001 127 SKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRKGDALVLPRVVL-EAFP----KELLR-----KKKLRDKAIDLI 196 (432)
Q Consensus 127 ~~lT~isp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~~~~kv~P~v~~-~g~~----~~~l~-----~~~~r~~~i~~i 196 (432)
..+--+.|.+..-.+.|+-+ .|-.|.+..++.|++-.|.+.. -.++ ..++- .+..++.+++.+
T Consensus 53 ~~lvaa~P~YlK~hS~GEyv-------FD~~Wa~a~~r~g~~YYPKlv~avPfTPv~G~R~l~~~~~~~~~~~~~L~~~~ 125 (370)
T PF04339_consen 53 GRLVAAAPLYLKSHSYGEYV-------FDWAWADAYQRAGLRYYPKLVGAVPFTPVTGPRLLIAPGADRAALRAALLQAL 125 (370)
T ss_pred CEEEEEeeeeeecccCccee-------hhHHHHHHHHHhccccCcceEeeeCCCCCcccceeECCCCCHHHHHHHHHHHH
Confidence 55667788888877777743 3788998887766666664432 1232 23332 245689999999
Q ss_pred HHHHHhcCcCeEEeec
Q 014001 197 LTECKEMEYDGIVLES 212 (432)
Q Consensus 197 v~~l~~~gfDGIdiD~ 212 (432)
.+++++.|+.++.+-+
T Consensus 126 ~~~a~~~~~Ss~h~lF 141 (370)
T PF04339_consen 126 EQLAEENGLSSWHILF 141 (370)
T ss_pred HHHHHHcCCCcceeec
Confidence 9999999999999864
No 109
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=33.45 E-value=69 Score=23.39 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCcCeE-Eeec
Q 014001 194 DLILTECKEMEYDGI-VLES 212 (432)
Q Consensus 194 ~~iv~~l~~~gfDGI-diD~ 212 (432)
..++..+++.||||. .|++
T Consensus 3 ~~i~~~L~~~GYdG~~siE~ 22 (55)
T PF07582_consen 3 KRIFSALREIGYDGWLSIEH 22 (55)
T ss_dssp HHHHHHHHHTT--SEEEE--
T ss_pred HHHHHHHHHcCCCceEEEEe
Confidence 467888999999996 4564
No 110
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=33.24 E-value=73 Score=30.44 Aligned_cols=83 Identities=14% Similarity=0.086 Sum_probs=52.4
Q ss_pred cCchhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceE
Q 014001 177 AFPKELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQ 256 (432)
Q Consensus 177 g~~~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~ 256 (432)
+|-|-.+-||... .....+.+.+.+.|-|+|-|= +. ..-+-++..++++.+++...
T Consensus 15 ~~~H~tliDP~k~-~~~~ei~~~~~~~GTDaImIG--------GS--~gvt~~~~~~~v~~ik~~~~------------- 70 (240)
T COG1646 15 GKRHLTLIDPDKT-EEADEIAEAAAEAGTDAIMIG--------GS--DGVTEENVDNVVEAIKERTD------------- 70 (240)
T ss_pred cceEEEEeCcccc-cccHHHHHHHHHcCCCEEEEC--------Cc--ccccHHHHHHHHHHHHhhcC-------------
Confidence 3334445567655 677888999999999999985 21 11222455667777776332
Q ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccC
Q 014001 257 LVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDF 296 (432)
Q Consensus 257 lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~ 296 (432)
|-+.+-|. +...+.+++|.+.+|+-=.
T Consensus 71 lPvilfP~-------------~~~~is~~aDavff~svLN 97 (240)
T COG1646 71 LPVILFPG-------------SPSGISPYADAVFFPSVLN 97 (240)
T ss_pred CCEEEecC-------------ChhccCccCCeEEEEEEec
Confidence 23334442 3345778999999998643
No 111
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=33.20 E-value=1.8e+02 Score=27.74 Aligned_cols=70 Identities=14% Similarity=0.261 Sum_probs=45.5
Q ss_pred HHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCC
Q 014001 195 LILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDF 274 (432)
Q Consensus 195 ~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~ 274 (432)
..++.+++.|.||+-+--.. +|. .+ -+.++.+.+++ .++...+++.|.++
T Consensus 92 ~~i~~~~~~Gadgvii~dlp----~e~---~~-------~~~~~~~~~~~--------~Gl~~~~~v~p~T~-------- 141 (244)
T PRK13125 92 NFLNMARDVGADGVLFPDLL----IDY---PD-------DLEKYVEIIKN--------KGLKPVFFTSPKFP-------- 141 (244)
T ss_pred HHHHHHHHcCCCEEEECCCC----CCc---HH-------HHHHHHHHHHH--------cCCCEEEEECCCCC--------
Confidence 34555778999999984100 111 12 13445555555 47888889998642
Q ss_pred CCCCHHHHhccccEEEEeecc
Q 014001 275 GPVDLQSLSDAVDGFSLMTYD 295 (432)
Q Consensus 275 ~~~d~~~l~~~vD~v~lMtYD 295 (432)
...++.+.+.+|.|.+|+-+
T Consensus 142 -~e~l~~~~~~~~~~l~msv~ 161 (244)
T PRK13125 142 -DLLIHRLSKLSPLFIYYGLR 161 (244)
T ss_pred -HHHHHHHHHhCCCEEEEEeC
Confidence 23567888899999999853
No 112
>COG3170 FimV Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.91 E-value=28 Score=38.30 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=26.5
Q ss_pred eeeEeeccCCCChhHHHHhccccCCCCHHHHHHH
Q 014001 57 YCTKYSTRANRSATHMHQRGLVKTDVNYQEILTE 90 (432)
Q Consensus 57 ~~~~~~~~~gdt~~~i~~r~lv~~~~~~~~il~~ 90 (432)
=+.+|++++|||+|+|+.+.--..++|.++.+..
T Consensus 187 ~g~tyt~~~~Dtl~dIAs~~rp~~~vt~~Q~~lA 220 (755)
T COG3170 187 PGDTYTVRSGDTLWDIASRLRPQDHVTVEQMLLA 220 (755)
T ss_pred CCcccccCCcchHHHHHHhhcCcccccHHHHHHH
Confidence 3678999999999999998554578887766443
No 113
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=32.85 E-value=2e+02 Score=28.73 Aligned_cols=92 Identities=21% Similarity=0.250 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhcCcCeEEeecc---------ccc-----ccCCCCCCHHHHHHHH-HHHHHHHHHhhccccccccc
Q 014001 188 LRDKAIDLILTECKEMEYDGIVLESW---------STW-----TAYGILHDPELRNMAL-EFIKQLGNALHSVNSVRNRK 252 (432)
Q Consensus 188 ~r~~~i~~iv~~l~~~gfDGIdiD~w---------~~~-----~~~e~~~~~~d~~~~~-~fl~eL~~~L~~~~~~~~~k 252 (432)
..+.|++.. +.+++.|||||+|..= ++. ..|+. +.++|-.|. +.|+++|+++..
T Consensus 147 ~i~~~~~aA-~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGG--slenR~rf~~EiI~aIR~avG~-------- 215 (338)
T cd04733 147 VIDRFAHAA-RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGG--SLENRARLLLEIYDAIRAAVGP-------- 215 (338)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCC--CHHHHHHHHHHHHHHHHHHcCC--------
Confidence 455666544 4567889999999732 111 01221 345554443 577777777753
Q ss_pred cceEEEEEECCCCCCCCCCCCCCCCC----HHHHhcc-ccEEEEeec
Q 014001 253 QHLQLVYVIGPPHSEKFQPHDFGPVD----LQSLSDA-VDGFSLMTY 294 (432)
Q Consensus 253 ~~~~lsvavpp~~~~~~~~~~~~~~d----~~~l~~~-vD~v~lMtY 294 (432)
++.|.+-+.+.... .+. ++..+ .+.|.+. +|++.|..-
T Consensus 216 -d~~v~vris~~~~~--~~g-~~~eea~~ia~~Le~~Gvd~iev~~g 258 (338)
T cd04733 216 -GFPVGIKLNSADFQ--RGG-FTEEDALEVVEALEEAGVDLVELSGG 258 (338)
T ss_pred -CCeEEEEEcHHHcC--CCC-CCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 57778877652110 111 11111 2234444 788888654
No 114
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=32.70 E-value=3.6e+02 Score=28.61 Aligned_cols=112 Identities=17% Similarity=0.207 Sum_probs=69.2
Q ss_pred HHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccce--EEEEEECCCCCCCCCCCCCC
Q 014001 198 TECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHL--QLVYVIGPPHSEKFQPHDFG 275 (432)
Q Consensus 198 ~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~--~lsvavpp~~~~~~~~~~~~ 275 (432)
+.+.+.|+..+.|-. -+.. ....-+.+.+.++.+++..+. .+. .+.+.+.|- .
T Consensus 125 ~~~~~~G~~~i~Lvs------Ge~p-~~~~~eyi~e~i~~I~~~~~~--------~g~i~~v~inig~l----------t 179 (469)
T PRK09613 125 KALEDMGHKRLALVA------GEDP-PNCDIEYILESIKTIYSTKHG--------NGEIRRVNVNIAPT----------T 179 (469)
T ss_pred HHHHHCCCCEEEEEe------CCCC-CCCCHHHHHHHHHHHHHhccc--------cCcceeeEEEeecC----------C
Confidence 345778999999952 1221 223456677788888775433 132 355555542 3
Q ss_pred CCCHHHHhcc-ccEEEEe--eccC---CCCCCCCCCCCchhHHHHHHHHhcCCCCCCCCC--CCeEEEeecc
Q 014001 276 PVDLQSLSDA-VDGFSLM--TYDF---SGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSL--ARKIFLGINF 339 (432)
Q Consensus 276 ~~d~~~l~~~-vD~v~lM--tYD~---~~~~~pgp~aPl~wv~~~l~~~~~~~~~~~~ip--~~KivlGipf 339 (432)
..+|+.|.+. +|.+.++ ||+- ..-++.||.....|--++++.+.. +|++ -.-+++||+=
T Consensus 180 ~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~-----aGi~~Vg~G~L~GLge 246 (469)
T PRK09613 180 VENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAME-----AGIDDVGIGVLFGLYD 246 (469)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHH-----cCCCeeCeEEEEcCCC
Confidence 4578888877 8987665 7762 111344777778888788888876 4554 2456777664
No 115
>PRK13840 sucrose phosphorylase; Provisional
Probab=32.68 E-value=99 Score=33.01 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCcCeEEeeccc-ccc----cCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 014001 183 LRKKKLRDKAIDLILTECKEMEYDGIVLESWS-TWT----AYGILHDPELRNMALEFIKQLGNALHS 244 (432)
Q Consensus 183 l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~-~~~----~~e~~~~~~d~~~~~~fl~eL~~~L~~ 244 (432)
+.||+.++.+.+ ++.+..+.|.||+-||.-. -|. .+.. .|+.. .|++++|+.++.
T Consensus 166 ~~NP~V~~~i~~-il~fwl~~GVDgfRLDAv~~l~K~~gt~c~~--~pe~~----~~l~~lr~~~~~ 225 (495)
T PRK13840 166 VHSAAGWEYLMS-ILDRFAASHVTLIRLDAAGYAIKKAGTSCFM--IPETF----EFIDRLAKEARA 225 (495)
T ss_pred CCCHHHHHHHHH-HHHHHHHCCCCEEEEechhhhhcCCCCCcCC--ChHHH----HHHHHHHHHhhh
Confidence 578999988876 4566667899999999421 010 0111 13333 488888888875
No 116
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=32.37 E-value=63 Score=30.04 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEECCCCCC
Q 014001 188 LRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSE 267 (432)
Q Consensus 188 ~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~ 267 (432)
..+.+...|.+.+++.+.+-+.||--+... .. .++ ..+..|+..|...++.. +....++......
T Consensus 99 ~~~~l~~~i~~~i~~~~~~~vVIDsls~l~--~~-~~~---~~~r~~l~~l~~~l~~~--------~~t~llt~~~~~~- 163 (226)
T PF06745_consen 99 DLEELLSKIREAIEELKPDRVVIDSLSALL--LY-DDP---EELRRFLRALIKFLKSR--------GVTTLLTSEMPSG- 163 (226)
T ss_dssp CHHHHHHHHHHHHHHHTSSEEEEETHHHHT--TS-SSG---GGHHHHHHHHHHHHHHT--------TEEEEEEEEESSS-
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECHHHHh--hc-CCH---HHHHHHHHHHHHHHHHC--------CCEEEEEEccccC-
Confidence 456788999999999999999999533331 11 122 23556788888888763 4333333331101
Q ss_pred CCCCCCCCCCCHHHHhc-cccEEEEeeccCCCC
Q 014001 268 KFQPHDFGPVDLQSLSD-AVDGFSLMTYDFSGP 299 (432)
Q Consensus 268 ~~~~~~~~~~d~~~l~~-~vD~v~lMtYD~~~~ 299 (432)
.....-..+.. .+|.++.|.|+..+.
T Consensus 164 ------~~~~~~~~i~~~l~D~vI~L~~~~~~~ 190 (226)
T PF06745_consen 164 ------SEDDGTFGIEHYLADGVIELRYEEEGG 190 (226)
T ss_dssp ------SSSSSSTSHHHHHSSEEEEEEEEEETT
T ss_pred ------cccccccchhhhcccEEEEEEEEeeCC
Confidence 01112234556 899999999987653
No 117
>PLN02801 beta-amylase
Probab=32.30 E-value=74 Score=33.81 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCcCeEEeecccccccCCCC-CCHHHHHHHHHHHHHHHHH
Q 014001 193 IDLILTECKEMEYDGIVLESWSTWTAYGIL-HDPELRNMALEFIKQLGNA 241 (432)
Q Consensus 193 i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~-~~~~d~~~~~~fl~eL~~~ 241 (432)
+++=+..+|..|.|||.+|.| |+.-|.- +..-|...|.++++-++++
T Consensus 39 l~~~L~~LK~~GVdGVmvDVW--WGiVE~~~P~~YdWsgY~~l~~mvr~~ 86 (517)
T PLN02801 39 LEKQLKRLKEAGVDGVMVDVW--WGIVESKGPKQYDWSAYRSLFELVQSF 86 (517)
T ss_pred HHHHHHHHHHcCCCEEEEeee--eeeeccCCCCccCcHHHHHHHHHHHHc
Confidence 344455688999999999987 3222321 1223667777777666653
No 118
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=32.09 E-value=2.4e+02 Score=28.14 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhcCcCeEEeecc---------ccc-----ccCCCCCCHHHHHH-HHHHHHHHHHHhhccccccccc
Q 014001 188 LRDKAIDLILTECKEMEYDGIVLESW---------STW-----TAYGILHDPELRNM-ALEFIKQLGNALHSVNSVRNRK 252 (432)
Q Consensus 188 ~r~~~i~~iv~~l~~~gfDGIdiD~w---------~~~-----~~~e~~~~~~d~~~-~~~fl~eL~~~L~~~~~~~~~k 252 (432)
..+.|++.. ..+++-|||||+|..= ++. ..|+. +.+.|.. ..+.++.+|+++.+
T Consensus 152 ii~~~~~aA-~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGg--sl~nr~rf~~eiv~aIR~~vG~-------- 220 (336)
T cd02932 152 VVDAFVAAA-RRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGG--SLENRMRFLLEVVDAVRAVWPE-------- 220 (336)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCC--CHHHHhHHHHHHHHHHHHHcCC--------
Confidence 455565543 3445579999999831 110 01111 2233332 34566777777653
Q ss_pred cceEEEEEECCC
Q 014001 253 QHLQLVYVIGPP 264 (432)
Q Consensus 253 ~~~~lsvavpp~ 264 (432)
++.|.+-+.+.
T Consensus 221 -d~~v~vri~~~ 231 (336)
T cd02932 221 -DKPLFVRISAT 231 (336)
T ss_pred -CceEEEEEccc
Confidence 56777777763
No 119
>PTZ00334 trans-sialidase; Provisional
Probab=32.06 E-value=11 Score=42.03 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=27.2
Q ss_pred cCCCCCCCCCCchhhhhhhhhhcccCccccccceeEeeeeh
Q 014001 6 DRRVAPSPGRPKNRVESAARLDQFSDSASDRKLITIFVIFF 46 (432)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (432)
+|||+-|||||...-||--|+ .+-.|+..+--+.||
T Consensus 16 RRRVTGSSGRRREGrESEpQR-----PNMSRrvF~SAVLLL 51 (780)
T PTZ00334 16 RRRVTGSSGRRREGRESEPQR-----PNMSRRVFTSAVLLL 51 (780)
T ss_pred cCcCCCCCCCcCCCCCCCCCC-----CCcchhhHHHHHHHH
Confidence 479999999999998988887 566677666544343
No 120
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=31.90 E-value=2.9e+02 Score=26.21 Aligned_cols=98 Identities=8% Similarity=0.037 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEECCCCCCCC
Q 014001 190 DKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKF 269 (432)
Q Consensus 190 ~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~ 269 (432)
+.+++.|..++++++.+=|.||-...... ........+..+..++++|+.-.+. .+..+.+..........
T Consensus 126 ~~i~~~i~~~~~~~~~~~vvID~l~~l~~-~~~~~~~~~~~~~~~~~~L~~la~~--------~~vtvll~sq~~~~~~~ 196 (271)
T cd01122 126 DSVLEKVRYMAVSHGIQHIIIDNLSIMVS-DERASGDERKALDEIMTKLRGFATE--------HGIHITLVSHLRRPDGD 196 (271)
T ss_pred HHHHHHHHHHHhcCCceEEEECCHHHHhc-cCCCchhHHHHHHHHHHHHHHHHHH--------hCCEEEEEecccCccCC
Confidence 45666777777889999999994211100 0000122333455667777665554 24444444443321111
Q ss_pred -------CCCCCCCCCHHHHhccccEEEEeeccC
Q 014001 270 -------QPHDFGPVDLQSLSDAVDGFSLMTYDF 296 (432)
Q Consensus 270 -------~~~~~~~~d~~~l~~~vD~v~lMtYD~ 296 (432)
.........-..+...+|.+.+|.++-
T Consensus 197 ~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r~~ 230 (271)
T cd01122 197 KTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQ 230 (271)
T ss_pred CccccCCCceEEeccCcHhHhhhccEEEEEEecC
Confidence 000111122336788999999998764
No 121
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=30.78 E-value=5.3e+02 Score=25.36 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=19.5
Q ss_pred hhHHHHHHHHhcCCCCCCCCCCCeEEEee
Q 014001 309 KWISFTLQLLLGSPGIGTRSLARKIFLGI 337 (432)
Q Consensus 309 ~wv~~~l~~~~~~~~~~~~ip~~KivlGi 337 (432)
.|.++.++.+.. .|+++++|++=-
T Consensus 163 ~~l~~~i~~a~~-----~GI~~~~IilDP 186 (282)
T PRK11613 163 RYFIEQIARCEA-----AGIAKEKLLLDP 186 (282)
T ss_pred HHHHHHHHHHHH-----cCCChhhEEEeC
Confidence 467777888776 799999999965
No 122
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=30.73 E-value=3.1e+02 Score=24.74 Aligned_cols=67 Identities=13% Similarity=0.105 Sum_probs=37.9
Q ss_pred HHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCCC
Q 014001 196 ILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFG 275 (432)
Q Consensus 196 iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~ 275 (432)
.++.+.+.|.||+-+-. +. . +....+++.++. .+..+.+.+.+.+.
T Consensus 72 ~~~~~~~~g~dgv~vh~-------~~--~----~~~~~~~~~~~~------------~~~~~g~~~~~~~~--------- 117 (211)
T cd00429 72 YIEAFAKAGADIITFHA-------EA--T----DHLHRTIQLIKE------------LGMKAGVALNPGTP--------- 117 (211)
T ss_pred HHHHHHHcCCCEEEECc-------cc--h----hhHHHHHHHHHH------------CCCeEEEEecCCCC---------
Confidence 35556689999987742 11 1 112233333332 25566666655321
Q ss_pred CCCHHHHhccccEEEEeeccC
Q 014001 276 PVDLQSLSDAVDGFSLMTYDF 296 (432)
Q Consensus 276 ~~d~~~l~~~vD~v~lMtYD~ 296 (432)
...+.++...+|++.+|+++.
T Consensus 118 ~~~~~~~~~~~d~i~~~~~~~ 138 (211)
T cd00429 118 VEVLEPYLDEVDLVLVMSVNP 138 (211)
T ss_pred HHHHHHHHhhCCEEEEEEECC
Confidence 123556666789999999854
No 123
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=30.70 E-value=4e+02 Score=26.75 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhcCcCeEEeec
Q 014001 188 LRDKAIDLILTECKEMEYDGIVLES 212 (432)
Q Consensus 188 ~r~~~i~~iv~~l~~~gfDGIdiD~ 212 (432)
..+.|++. ...+++-|||||+|..
T Consensus 150 ii~~f~~a-A~~a~~aGfDgVeih~ 173 (338)
T cd02933 150 IVADFRQA-ARNAIEAGFDGVEIHG 173 (338)
T ss_pred HHHHHHHH-HHHHHHcCCCEEEEcc
Confidence 34556543 3556667999999973
No 124
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=30.51 E-value=96 Score=33.35 Aligned_cols=56 Identities=21% Similarity=0.254 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCcCeEEeeccccc-----ccCCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 014001 183 LRKKKLRDKAIDLILTECKEMEYDGIVLESWSTW-----TAYGILHDPELRNMALEFIKQLGNALHSV 245 (432)
Q Consensus 183 l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~-----~~~e~~~~~~d~~~~~~fl~eL~~~L~~~ 245 (432)
..+|+.|+.+++.+..+++ .|+||+-+|.-... +..+. .|.. ..|++++++.+++.
T Consensus 170 ~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~--~p~~----~~f~~~~~~~v~~~ 230 (539)
T TIGR02456 170 YDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCEN--LPET----HEFLKRLRKMVDRE 230 (539)
T ss_pred CCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCC--CchH----HHHHHHHHHHHHHh
Confidence 4578999999887777775 89999999941100 00000 1222 34888999888753
No 125
>PF00659 POLO_box: POLO box duplicated region; InterPro: IPR000959 A subgroup of serine/threonine protein kinases, Polo or Polo-like kinases play multiple roles during the cell cycle. Polo kinases are required at several key points through mitosis, starting from control of the G2/M transition through phosphorylation of Cdc25C and mitotic cyclins. Polo kinases are characterised by an amino terminal catalytic domain, and a carboxy terminal non-catalytic domain consisting of three blocks of conserved sequences known as polo boxes which form one single functional domain []. The domain is named after its founding member encoded by the polo gene of Drosophila melanogaster []. This domain of around 70 amino acids has been found in species ranging from yeast to mammals. Polo boxes appear to mediate interaction with multiple proteins through protein:protein interactions; some but not all of these proteins are substrates for the kinase domain of the molecule []. The crystal structure of the polo domain of the murine protein, Sak, is dimeric, consisting of two alpha-helices and two six-stranded beta-sheets []. The topology of one polypeptide subunit of the dimer consists of, from its N- to C terminus, an extended strand segment, five beta-strands, one alpha-helix (A) and a C-terminal beta-strand. Beta-strands from one subunit form a contiguous antiparallel beta-sheet with beta-strands from the second subunit. The two beta-sheets pack with a crossing angle of 110 degrees, orienting the hydrophobic surfaces inward and the hydrophilic surfaces outward. Helix A, which is colinear with beta-strand 6 of the same polypeptide, buries a large portion of the non-overlapping hydrophobic beta-sheet surfaces. Interactions involving helices A comprise a majority of the hydrophobic core structure and also the dimer interface. Point mutations in the Polo box of the budding yeast Cdc5 protein abolish the ability of overexpressed Cdc5 to interact with the spindle poles and to organise cytokinetic structures [].; GO: 0005515 protein binding; PDB: 1MBY_B 3P37_A 3MHN_A 1Q4K_A 3HIK_A 3Q1I_A 3P35_A 3MHQ_A 1UMW_B 3MQ8_B ....
Probab=30.34 E-value=2.2e+02 Score=21.15 Aligned_cols=39 Identities=10% Similarity=0.131 Sum_probs=25.4
Q ss_pred ceEeecCCCceeEEEEcCCCceEEEEeCC-----HHHHHHHHHHHH
Q 014001 370 ALQWEKNSGEHFFFFSDENQVKHAVFYPS-----LISISMRLEEAK 410 (432)
Q Consensus 370 ~~~wD~~~~~~y~~y~d~~g~~~~V~ydd-----~~Si~~K~~la~ 410 (432)
++...+... .+.|.+++|.......++ +..++.|+.++|
T Consensus 25 kivl~~~~~--~v~yi~~~~~~~~~~~~~~~~~~p~~l~~kl~~~k 68 (68)
T PF00659_consen 25 KIVLSPDGR--LVTYIDRDGERQTYSLSSLLEDFPEDLKKKLTYLK 68 (68)
T ss_dssp EEEEETTCC--EEEEE-TTS-EEEEECTCHHHH--HHHHHHHHHHH
T ss_pred EEEECCCCC--EEEEECCCCcEEEEEccccccCCCHHHHHHhhccC
Confidence 344444333 556767778777777788 799999999986
No 126
>PLN02411 12-oxophytodienoate reductase
Probab=30.24 E-value=3.6e+02 Score=27.77 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhcCcCeEEee
Q 014001 188 LRDKAIDLILTECKEMEYDGIVLE 211 (432)
Q Consensus 188 ~r~~~i~~iv~~l~~~gfDGIdiD 211 (432)
..+.|++. ...+++-|||||.|-
T Consensus 163 ii~~f~~A-A~rA~~AGFDGVEIH 185 (391)
T PLN02411 163 VVEHYRQA-ALNAIRAGFDGIEIH 185 (391)
T ss_pred HHHHHHHH-HHHHHHcCCCEEEEc
Confidence 34555554 345567899999996
No 127
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=29.92 E-value=85 Score=30.25 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeecc
Q 014001 224 DPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYD 295 (432)
Q Consensus 224 ~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD 295 (432)
++++.+.+..+|++|++.... ..++ | .+|++.+..+||++.+|.|-
T Consensus 181 n~~e~~~l~~~i~~i~~~~g~---------till---I--------------EHdM~~Vm~l~dri~Vl~~G 226 (250)
T COG0411 181 NPEETEELAELIRELRDRGGV---------TILL---I--------------EHDMKLVMGLADRIVVLNYG 226 (250)
T ss_pred CHHHHHHHHHHHHHHHhcCCc---------EEEE---E--------------EeccHHHhhhccEEEeccCC
Confidence 688888899999998875431 1111 1 47899999999999999974
No 128
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=29.75 E-value=3.1e+02 Score=27.93 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhcCcCeEEeec
Q 014001 188 LRDKAIDLILTECKEMEYDGIVLES 212 (432)
Q Consensus 188 ~r~~~i~~iv~~l~~~gfDGIdiD~ 212 (432)
..+.|++.. ..+++-|||||+|..
T Consensus 148 ii~~f~~AA-~ra~~aGfDgVEih~ 171 (370)
T cd02929 148 VRRWYVDAA-LRARDAGFDIVYVYA 171 (370)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEcc
Confidence 456676644 456668999999973
No 129
>PLN02905 beta-amylase
Probab=29.51 E-value=84 Score=34.32 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCcCeEEeecccccccCCCC-CCHHHHHHHHHHHHHHHHH
Q 014001 194 DLILTECKEMEYDGIVLESWSTWTAYGIL-HDPELRNMALEFIKQLGNA 241 (432)
Q Consensus 194 ~~iv~~l~~~gfDGIdiD~w~~~~~~e~~-~~~~d~~~~~~fl~eL~~~ 241 (432)
+.=+..+|..|.|||.+|.| |+.-|.- +..-+...|.+|+.-++++
T Consensus 289 ~a~L~aLK~aGVdGVmvDVW--WGiVE~~gP~~YdWsgY~~L~~mvr~~ 335 (702)
T PLN02905 289 LKQLRILKSINVDGVKVDCW--WGIVEAHAPQEYNWNGYKRLFQMVREL 335 (702)
T ss_pred HHHHHHHHHcCCCEEEEeee--eeeeecCCCCcCCcHHHHHHHHHHHHc
Confidence 33344578899999999987 2222320 1233667777777666653
No 130
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=29.35 E-value=49 Score=34.65 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=43.7
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 014001 180 KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHS 244 (432)
Q Consensus 180 ~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~ 244 (432)
...+++...|+..++.|+++++++|||| -|- ..++..|..+ .|....+.|...|++
T Consensus 97 pRplrdk~yqq~c~~~I~~yL~engfd~-pis-------~k~l~~PS~k-~F~~IFK~LY~~lDp 152 (622)
T COG5185 97 PRPLRDKNYQQACQEEIYDYLKENGFDI-PIS-------IKFLKQPSQK-GFIIIFKWLYLRLDP 152 (622)
T ss_pred CcccccchHHHHHHHHHHHHHHHcCCCc-chh-------HHHhcCCccc-cHHHHHHHHHhccCC
Confidence 4678899999999999999999999998 222 1233355655 488889999999885
No 131
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=29.25 E-value=1.5e+02 Score=29.15 Aligned_cols=71 Identities=4% Similarity=-0.071 Sum_probs=40.3
Q ss_pred hHHHHHHHhCCCcEEeEEee-ccCchhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHH
Q 014001 156 AGWLLELRKGDALVLPRVVL-EAFPKELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEF 234 (432)
Q Consensus 156 ~~~l~~~~~~~~kv~P~v~~-~g~~~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~f 234 (432)
++.++-+|++|++|+.-+.- ++|+-.- ..++. +.+.+.+++.|..||-+|+ ++. +.+..+++
T Consensus 76 ~elv~Ya~~KgVgi~lw~~~~~~~~~~~-----~~~~~-~~~f~~~~~~Gv~GvKidF------~~~-----d~Q~~v~~ 138 (273)
T PF10566_consen 76 PELVDYAKEKGVGIWLWYHSETGGNVAN-----LEKQL-DEAFKLYAKWGVKGVKIDF------MDR-----DDQEMVNW 138 (273)
T ss_dssp HHHHHHHHHTT-EEEEEEECCHTTBHHH-----HHCCH-HHHHHHHHHCTEEEEEEE--------SS-----TSHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEeCCcchhhHh-----HHHHH-HHHHHHHHHcCCCEEeeCc------CCC-----CCHHHHHH
Confidence 45666667788888733322 1222111 33333 8888899999999999997 333 22334455
Q ss_pred HHHHHHHhh
Q 014001 235 IKQLGNALH 243 (432)
Q Consensus 235 l~eL~~~L~ 243 (432)
.+++-+...
T Consensus 139 y~~i~~~AA 147 (273)
T PF10566_consen 139 YEDILEDAA 147 (273)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 132
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=29.05 E-value=3.2e+02 Score=24.98 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=22.3
Q ss_pred ceEEEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccC
Q 014001 254 HLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDF 296 (432)
Q Consensus 254 ~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~ 296 (432)
++.+.+++.|.+. ....+.+...+||+.+|+++-
T Consensus 109 ~~~~g~~~~~~t~---------~e~~~~~~~~~d~i~~~~~~~ 142 (220)
T PRK05581 109 GIKAGLVLNPATP---------LEPLEDVLDLLDLVLLMSVNP 142 (220)
T ss_pred CCEEEEEECCCCC---------HHHHHHHHhhCCEEEEEEECC
Confidence 5666667755321 224566777899999999764
No 133
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=28.86 E-value=2.5e+02 Score=27.16 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=39.9
Q ss_pred CChHHHHHHHh-CCCcEEeEEeeccCchhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeec
Q 014001 154 ADAGWLLELRK-GDALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEMEYDGIVLES 212 (432)
Q Consensus 154 ~d~~~l~~~~~-~~~kv~P~v~~~g~~~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~ 212 (432)
+..+.++.+++ -++.|.+||--. ...+.-++...+.+... +..+++.|.||+++=+
T Consensus 38 PS~g~i~~~~~~~~ipv~vMIRPR--~gdF~Ys~~E~~~M~~d-i~~~~~~GadGvV~G~ 94 (248)
T PRK11572 38 PSLGVLKSVRERVTIPVHPIIRPR--GGDFCYSDGEFAAMLED-IATVRELGFPGLVTGV 94 (248)
T ss_pred CCHHHHHHHHHhcCCCeEEEEecC--CCCCCCCHHHHHHHHHH-HHHHHHcCCCEEEEee
Confidence 56788988877 467777666322 23566677777777777 5677889999999853
No 134
>PLN02877 alpha-amylase/limit dextrinase
Probab=28.55 E-value=1.6e+02 Score=34.13 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCcCeEEeec
Q 014001 185 KKKLRDKAIDLILTECKEMEYDGIVLES 212 (432)
Q Consensus 185 ~~~~r~~~i~~iv~~l~~~gfDGIdiD~ 212 (432)
++..|+-+++++.-++++|++||.-+|.
T Consensus 533 ~~mvrklIlDsl~yW~~ey~VDGFRFDl 560 (970)
T PLN02877 533 HYMVDRLIVDDLLNWAVNYKVDGFRFDL 560 (970)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 3678999999999999999999999995
No 135
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=27.15 E-value=1.6e+02 Score=32.38 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=56.1
Q ss_pred hHHHHHHHhCCCcEEeEEeeccCc-----------------------------hh--hcCCHHHHHHHHHHHHHHHHhcC
Q 014001 156 AGWLLELRKGDALVLPRVVLEAFP-----------------------------KE--LLRKKKLRDKAIDLILTECKEME 204 (432)
Q Consensus 156 ~~~l~~~~~~~~kv~P~v~~~g~~-----------------------------~~--~l~~~~~r~~~i~~iv~~l~~~g 204 (432)
+.+|+++|+.|+-|+.=++-+.++ .. ....++.|+=|++|+.-.+.+|.
T Consensus 217 k~fVD~aH~~GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yH 296 (628)
T COG0296 217 KALVDAAHQAGIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYH 296 (628)
T ss_pred HHHHHHHHHcCCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhC
Confidence 567888898887776433333221 11 22367899999999999999999
Q ss_pred cCeEEeecccccc--cCC-----CCCC-HHHH--HHHHHHHHHHHHHhhcc
Q 014001 205 YDGIVLESWSTWT--AYG-----ILHD-PELR--NMALEFIKQLGNALHSV 245 (432)
Q Consensus 205 fDGIdiD~w~~~~--~~e-----~~~~-~~d~--~~~~~fl~eL~~~L~~~ 245 (432)
+||+-+|.-.... .|+ ...+ ...| -.-++|++++.+.++..
T Consensus 297 iDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~ 347 (628)
T COG0296 297 IDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEE 347 (628)
T ss_pred CcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhccc
Confidence 9999999432110 000 0000 0011 22457888888888864
No 136
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=27.12 E-value=1.3e+02 Score=29.83 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEEC
Q 014001 183 LRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIG 262 (432)
Q Consensus 183 l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavp 262 (432)
+..|+.-+.=+..|..... +| -+-|= ++.+.+.++-.....++++.++.|..++......-.+-+.+-+|
T Consensus 116 l~~p~~f~~QlrAilra~~-~g--~l~Im-------~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvP 185 (293)
T PF02896_consen 116 LAHPELFRTQLRAILRAAA-EG--NLRIM-------FPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVP 185 (293)
T ss_dssp HHSHHHHHHHHHHHHHHHH-HS--EEEEE-------ESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SH
T ss_pred ccchhhHHHHHHHHHHHHh-hc--CCEEE-------ecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechh
Confidence 4445444444455555544 23 44443 46666777777788899999888875432221122333444444
Q ss_pred CCCCCCCCCCCCCCCCHHHHhccccEEEEeeccC
Q 014001 263 PPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDF 296 (432)
Q Consensus 263 p~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~ 296 (432)
.. ....+.+++.+|||+|=|=|.
T Consensus 186 sa-----------al~~~~~~~~~DF~SIGtNDL 208 (293)
T PF02896_consen 186 SA-----------ALMADEFAKEVDFFSIGTNDL 208 (293)
T ss_dssp HH-----------HHTHHHHHTTSSEEEEEHHHH
T ss_pred HH-----------HHHHHHHHHHCCEEEEChhHH
Confidence 32 467789999999999988775
No 137
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=26.37 E-value=5.8e+02 Score=24.44 Aligned_cols=169 Identities=15% Similarity=0.141 Sum_probs=85.3
Q ss_pred hhhhcCCCCcEEEEEEEEeecCCeEEEecCCCCCChHHHHHHHhCCCcEEeEEeeccCc-hhhcCCHHHHHHHHHHHHHH
Q 014001 121 LAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRKGDALVLPRVVLEAFP-KELLRKKKLRDKAIDLILTE 199 (432)
Q Consensus 121 ~~~~~~~~lT~isp~w~~i~~~g~~~~~~g~~d~d~~~l~~~~~~~~kv~P~v~~~g~~-~~~l~~~~~r~~~i~~iv~~ 199 (432)
.++..+++++.|=+.|-+ .. +... ++-+..++.+|++++.+. .|||= ..++ .+.-++.-++.
T Consensus 17 ~Le~~g~yID~lKfg~Gt------~~-l~~~-~~l~eki~la~~~~V~v~----~GGtl~E~~~-----~q~~~~~Yl~~ 79 (237)
T TIGR03849 17 YLKVCGDYITFVKFGWGT------SA-LIDR-DIVKEKIEMYKDYGIKVY----PGGTLFEIAH-----SKGKFDEYLNE 79 (237)
T ss_pred HHHHhhhheeeEEecCce------Ee-eccH-HHHHHHHHHHHHcCCeEe----CCccHHHHHH-----HhhhHHHHHHH
Confidence 355566677777666622 21 2100 011333444566775554 46642 2222 33567888889
Q ss_pred HHhcCcCeEEeecccccccCCCC-CCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCCCCCC
Q 014001 200 CKEMEYDGIVLESWSTWTAYGIL-HDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVD 278 (432)
Q Consensus 200 l~~~gfDGIdiD~w~~~~~~e~~-~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~~~d 278 (432)
|++.|||.|.|.- +.+ .+.+++. .+++.+++. ++.+-.-+..+... .....+..+
T Consensus 80 ~k~lGf~~IEiS~-------G~~~i~~~~~~---rlI~~~~~~------------g~~v~~EvG~K~~~--~~~~~~~~~ 135 (237)
T TIGR03849 80 CDELGFEAVEISD-------GSMEISLEERC---NLIERAKDN------------GFMVLSEVGKKSPE--KDSELTPDD 135 (237)
T ss_pred HHHcCCCEEEEcC-------CccCCCHHHHH---HHHHHHHhC------------CCeEeccccccCCc--ccccCCHHH
Confidence 9999999999972 222 1445554 344444422 33322222221110 001122233
Q ss_pred HHH-----HhccccEEEEeeccCCCCCCCCCCC-CchhHHHHHHHHhcCCCCCCCCCCCeEEEeec
Q 014001 279 LQS-----LSDAVDGFSLMTYDFSGPHNPGPNA-PLKWISFTLQLLLGSPGIGTRSLARKIFLGIN 338 (432)
Q Consensus 279 ~~~-----l~~~vD~v~lMtYD~~~~~~pgp~a-Pl~wv~~~l~~~~~~~~~~~~ip~~KivlGip 338 (432)
+-. |..=+|+|++-+=+-... -|-.- --.|-.+.++.++ ..+|.+||+.--|
T Consensus 136 ~i~~~~~~LeAGA~~ViiEarEsg~~--~Gi~~~~g~~r~d~v~~i~------~~l~~eklifEAp 193 (237)
T TIGR03849 136 RIKLINKDLEAGADYVIIEGRESGKN--IGLFDEKGNVKEDELDVLA------ENVDINKVIFEAP 193 (237)
T ss_pred HHHHHHHHHHCCCcEEEEeehhcCCC--cceeCCCCCCchHHHHHHH------hhCChhcEEEECC
Confidence 322 445588998887332110 11111 1245667777777 4689999997766
No 138
>PLN02334 ribulose-phosphate 3-epimerase
Probab=26.17 E-value=3e+02 Score=25.73 Aligned_cols=69 Identities=7% Similarity=0.088 Sum_probs=39.2
Q ss_pred HHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCCC
Q 014001 196 ILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFG 275 (432)
Q Consensus 196 iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~ 275 (432)
.++.+.+.|.|||-+-. |. ...+ . ..+.++.... .++.+-+++.|.++
T Consensus 80 ~~~~~~~~gad~v~vH~-------~q--~~~d--~---~~~~~~~i~~---------~g~~iGls~~~~t~--------- 127 (229)
T PLN02334 80 YVPDFAKAGASIFTFHI-------EQ--ASTI--H---LHRLIQQIKS---------AGMKAGVVLNPGTP--------- 127 (229)
T ss_pred HHHHHHHcCCCEEEEee-------cc--ccch--h---HHHHHHHHHH---------CCCeEEEEECCCCC---------
Confidence 34556778999996653 21 0111 1 2233333333 25667777776432
Q ss_pred CCCHHHHhcc--ccEEEEeeccC
Q 014001 276 PVDLQSLSDA--VDGFSLMTYDF 296 (432)
Q Consensus 276 ~~d~~~l~~~--vD~v~lMtYD~ 296 (432)
......+.+. +|++.+|+..-
T Consensus 128 ~~~~~~~~~~~~~Dyi~~~~v~p 150 (229)
T PLN02334 128 VEAVEPVVEKGLVDMVLVMSVEP 150 (229)
T ss_pred HHHHHHHHhccCCCEEEEEEEec
Confidence 1234566677 99999999753
No 139
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=26.14 E-value=1.7e+02 Score=25.24 Aligned_cols=51 Identities=16% Similarity=0.066 Sum_probs=31.2
Q ss_pred HHHHHHhCCCcEEeEEeec----cCchhhcCCHHHHHHHHHHHHHHHHhcCcCeEEe
Q 014001 158 WLLELRKGDALVLPRVVLE----AFPKELLRKKKLRDKAIDLILTECKEMEYDGIVL 210 (432)
Q Consensus 158 ~l~~~~~~~~kv~P~v~~~----g~~~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdi 210 (432)
+|..+++.|++++ +++- -|..-.=-+.+.|+.+.+.|-..|+++||.=+|+
T Consensus 41 ~L~~~k~~g~~~l--fVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~ 95 (130)
T PF04914_consen 41 LLDVCKELGIDVL--FVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADF 95 (130)
T ss_dssp HHHHHHHTT-EEE--EEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-
T ss_pred HHHHHHHcCCceE--EEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 4555677676655 5442 2432333378899999999999999999955555
No 140
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=25.99 E-value=1.4e+02 Score=28.65 Aligned_cols=48 Identities=10% Similarity=0.103 Sum_probs=37.3
Q ss_pred hHHHHHHHhCCCcEEeEEeeccCchhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeeccc
Q 014001 156 AGWLLELRKGDALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEMEYDGIVLESWS 214 (432)
Q Consensus 156 ~~~l~~~~~~~~kv~P~v~~~g~~~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~ 214 (432)
+++++++|+.|+|+++.+ +|..|+-+.+.+.++..+.|+||+=+|+=+
T Consensus 69 ~~~i~~l~~~g~~~~~~~-----------~P~v~~w~~~~~~~~~~~~Gvdg~w~D~~E 116 (265)
T cd06589 69 KSMIDELHDNGVKLVLWI-----------DPYIREWWAEVVKKLLVSLGVDGFWTDMGE 116 (265)
T ss_pred HHHHHHHHHCCCEEEEEe-----------ChhHHHHHHHHHHHhhccCCCCEEeccCCC
Confidence 678999999899988543 233378887777777788999999999644
No 141
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=25.40 E-value=2.5e+02 Score=26.77 Aligned_cols=93 Identities=16% Similarity=0.244 Sum_probs=56.0
Q ss_pred ChHHHHHHHh-CCCcEEeEEeeccCchhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHH
Q 014001 155 DAGWLLELRK-GDALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALE 233 (432)
Q Consensus 155 d~~~l~~~~~-~~~kv~P~v~~~g~~~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~ 233 (432)
.+..++.+|+ .+..+= + +-|+.+|. ++++. +.+.|.|=|.+-. |.. .. ....
T Consensus 47 g~~~i~~ir~~t~~~~D--v------HLMv~~P~---~~i~~----~~~aGad~it~H~-------Ea~--~~---~~~~ 99 (229)
T PRK09722 47 SPFFVSQVKKLASKPLD--V------HLMVTDPQ---DYIDQ----LADAGADFITLHP-------ETI--NG---QAFR 99 (229)
T ss_pred CHHHHHHHHhcCCCCeE--E------EEEecCHH---HHHHH----HHHcCCCEEEECc-------cCC--cc---hHHH
Confidence 4667888876 221111 1 34667774 35544 4445899888884 421 11 1223
Q ss_pred HHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeecc
Q 014001 234 FIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYD 295 (432)
Q Consensus 234 fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD 295 (432)
+++.+++ .|...-+|+-|.++ ..++..+.+.+|+|.+||-+
T Consensus 100 ~i~~Ik~------------~G~kaGlalnP~T~---------~~~l~~~l~~vD~VLvMsV~ 140 (229)
T PRK09722 100 LIDEIRR------------AGMKVGLVLNPETP---------VESIKYYIHLLDKITVMTVD 140 (229)
T ss_pred HHHHHHH------------cCCCEEEEeCCCCC---------HHHHHHHHHhcCEEEEEEEc
Confidence 4444443 25667888988753 24567788899999999986
No 142
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=24.96 E-value=3.7e+02 Score=27.03 Aligned_cols=64 Identities=16% Similarity=0.251 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhcCcCeEEeecc---------ccc-----ccCCCCCCHHHHHH-HHHHHHHHHHHhhccccccccc
Q 014001 188 LRDKAIDLILTECKEMEYDGIVLESW---------STW-----TAYGILHDPELRNM-ALEFIKQLGNALHSVNSVRNRK 252 (432)
Q Consensus 188 ~r~~~i~~iv~~l~~~gfDGIdiD~w---------~~~-----~~~e~~~~~~d~~~-~~~fl~eL~~~L~~~~~~~~~k 252 (432)
..+.|++.. ..+++-|||||+|-.= ++. ..|++ +.+.|.. ..+.|+++|+++..
T Consensus 135 i~~~f~~aA-~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGG--slenR~r~~~eiv~aIR~~vG~-------- 203 (353)
T cd02930 135 TIEDFARCA-ALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGG--SFENRMRFPVEIVRAVRAAVGE-------- 203 (353)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCC--CHHHHhHHHHHHHHHHHHHcCC--------
Confidence 455565544 3456689999999631 110 01121 2344433 34677778877753
Q ss_pred cceEEEEEECC
Q 014001 253 QHLQLVYVIGP 263 (432)
Q Consensus 253 ~~~~lsvavpp 263 (432)
++.+.+-+.+
T Consensus 204 -d~~v~iRi~~ 213 (353)
T cd02930 204 -DFIIIYRLSM 213 (353)
T ss_pred -CceEEEEecc
Confidence 5666666654
No 143
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=24.35 E-value=5.9e+02 Score=23.78 Aligned_cols=85 Identities=15% Similarity=0.179 Sum_probs=55.8
Q ss_pred CCChHHHHHHHhCCCcEEeEEeeccCchhhcCCHHHHHHHHHHHHHHHHhcCcC-eEEe--ecccccccCCCCCCHHHHH
Q 014001 153 NADAGWLLELRKGDALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEMEYD-GIVL--ESWSTWTAYGILHDPELRN 229 (432)
Q Consensus 153 d~d~~~l~~~~~~~~kv~P~v~~~g~~~~~l~~~~~r~~~i~~iv~~l~~~gfD-GIdi--D~w~~~~~~e~~~~~~d~~ 229 (432)
.+.+++++.++++|++++|....++- ..-....+.=.+-..+.++.+++.||- |-.| |++ +.. ...+-..
T Consensus 52 ~lt~~e~~~i~~~Gl~~~pIyq~~~~-~~~~~~~~~G~~dA~~A~~~A~~lG~p~gs~IYfavD-----~d~-~~~~~~~ 124 (212)
T cd06418 52 NLTATELETITAAGLKVFPIYQGGGY-SLDYFGYEQGVKDARDAVAAARALGFPPGTIIYFAVD-----FDA-LDDEVTE 124 (212)
T ss_pred CCCHHHHHHHHHCCCEEEEEEECCCc-cccccCHHHHHHHHHHHHHHHHHcCCCCCCEEEEEee-----cCC-CcchhHH
Confidence 35688999999999999986533322 222334455566778889999999987 5443 332 121 1222334
Q ss_pred HHHHHHHHHHHHhhc
Q 014001 230 MALEFIKQLGNALHS 244 (432)
Q Consensus 230 ~~~~fl~eL~~~L~~ 244 (432)
.-+.+++.+.++|+.
T Consensus 125 ~v~~Y~~a~~~~l~~ 139 (212)
T cd06418 125 VILPYFRGWNDALHE 139 (212)
T ss_pred HHHHHHHHHHHHHHh
Confidence 567899999999986
No 144
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=23.86 E-value=1.5e+02 Score=32.01 Aligned_cols=61 Identities=10% Similarity=0.132 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccc---cCCCCC------CHHHHHHHHHHHHHHHHHhhc
Q 014001 183 LRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWT---AYGILH------DPELRNMALEFIKQLGNALHS 244 (432)
Q Consensus 183 l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~---~~e~~~------~~~d~~~~~~fl~eL~~~L~~ 244 (432)
..+|+.|+.+++.+. +..+.|+||.-||.-.... .+.... .-.+......|++++++.++.
T Consensus 166 ~~np~v~~~i~~~~~-~W~~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 235 (543)
T TIGR02403 166 WENPEVREELKDVVN-FWRDKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFG 235 (543)
T ss_pred CCCHHHHHHHHHHHH-HHHHcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhc
Confidence 357889998877555 5556899999999421110 000000 001223456799999998864
No 145
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=23.75 E-value=4.4e+02 Score=25.90 Aligned_cols=94 Identities=16% Similarity=0.232 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhcCcCeEEeeccc---------cc-----ccCCCCCCHHHHHH-HHHHHHHHHHHhhcccccccccc
Q 014001 189 RDKAIDLILTECKEMEYDGIVLESWS---------TW-----TAYGILHDPELRNM-ALEFIKQLGNALHSVNSVRNRKQ 253 (432)
Q Consensus 189 r~~~i~~iv~~l~~~gfDGIdiD~w~---------~~-----~~~e~~~~~~d~~~-~~~fl~eL~~~L~~~~~~~~~k~ 253 (432)
.+.|++.. +.+++-|||||+|..=. +. ..|+. +.+.|.. ..+.|+++|+++..
T Consensus 140 i~~~~~aA-~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGg--s~enr~r~~~eii~avr~~~g~--------- 207 (327)
T cd02803 140 IEDFAAAA-RRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGG--SLENRARFLLEIVAAVREAVGP--------- 207 (327)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCC--CHHHHHHHHHHHHHHHHHHcCC---------
Confidence 44454433 34455799999998410 00 00111 2233332 34566777776653
Q ss_pred ceEEEEEECCCCCCCCCCCCCCCCCH----HHHhcc-ccEEEEeeccCC
Q 014001 254 HLQLVYVIGPPHSEKFQPHDFGPVDL----QSLSDA-VDGFSLMTYDFS 297 (432)
Q Consensus 254 ~~~lsvavpp~~~~~~~~~~~~~~d~----~~l~~~-vD~v~lMtYD~~ 297 (432)
++.|.+-+.+..... . .+...+. +.|.+. +|++.|-.-++.
T Consensus 208 d~~i~vris~~~~~~--~-g~~~~e~~~la~~l~~~G~d~i~vs~g~~~ 253 (327)
T cd02803 208 DFPVGVRLSADDFVP--G-GLTLEEAIEIAKALEEAGVDALHVSGGSYE 253 (327)
T ss_pred CceEEEEechhccCC--C-CCCHHHHHHHHHHHHHcCCCEEEeCCCCCc
Confidence 567888787642110 0 0111222 234443 899998776543
No 146
>COG3410 Uncharacterized conserved protein [Function unknown]
Probab=23.64 E-value=2.1e+02 Score=25.90 Aligned_cols=47 Identities=19% Similarity=0.303 Sum_probs=37.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHH
Q 014001 182 LLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQL 238 (432)
Q Consensus 182 ~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL 238 (432)
.=.+++..+++|.|-+..+...|..|+.|-+ + +|+.++....+++..
T Consensus 143 ~~k~~eik~kiIkNsinvlmtRGIrGlyiya-------e---Dpelrerl~~l~~~~ 189 (191)
T COG3410 143 PEKNQEIKEKIIKNSINVLMTRGIRGLYIYA-------E---DPELRERLVELKRGK 189 (191)
T ss_pred hhhCHHHHHHHHHHHHHHHHhcccceEEEEE-------e---CHHHHHHHHHHHhhh
Confidence 3467888999999999999999999999984 3 678887766665543
No 147
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=22.82 E-value=3e+02 Score=30.03 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHh--cCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEECCCCCC
Q 014001 190 DKAIDLILTECKE--MEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSE 267 (432)
Q Consensus 190 ~~~i~~iv~~l~~--~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~ 267 (432)
+-|-.+|-.+++. +|-.||-+ +.+.+.++......++++....+.....+.+ .+..+.+-+--+
T Consensus 368 ~~f~~QlrAilra~~~G~~~Im~---------PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~--~~~~~g~mIE~p--- 433 (575)
T PRK11177 368 EILHDQLRAILRASAFGKLRIMF---------PMIISVEEVRELKAEIEILKQELRDEGKAFD--ESIEIGVMVETP--- 433 (575)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEE---------cCCCCHHHHHHHHHHHHHHHHHHHHhccccC--CCcEEEEEEeCH---
Confidence 4555555555544 45555554 4455677777777888877777753221111 123333333221
Q ss_pred CCCCCCCCCCCHHHHhccccEEEEeeccCCC
Q 014001 268 KFQPHDFGPVDLQSLSDAVDGFSLMTYDFSG 298 (432)
Q Consensus 268 ~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~ 298 (432)
-.....++|++.||+|++=|.|...
T Consensus 434 ------~a~~~~d~i~~~vDf~sIGtnDL~q 458 (575)
T PRK11177 434 ------AAAVIARHLAKEVDFFSIGTNDLTQ 458 (575)
T ss_pred ------HHHHhHHHHHhhCCEEEECcHHHHH
Confidence 1245788999999999999999764
No 148
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=21.95 E-value=4e+02 Score=30.01 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhcCcCeEEeec
Q 014001 188 LRDKAIDLILTECKEMEYDGIVLES 212 (432)
Q Consensus 188 ~r~~~i~~iv~~l~~~gfDGIdiD~ 212 (432)
..+.|++.. ..+++-|||||+|..
T Consensus 549 ~i~~f~~aA-~~a~~aGfDgveih~ 572 (765)
T PRK08255 549 VRDDFVAAA-RRAAEAGFDWLELHC 572 (765)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEec
Confidence 455666544 345668999999974
No 149
>PLN02591 tryptophan synthase
Probab=21.26 E-value=7.4e+02 Score=23.81 Aligned_cols=100 Identities=22% Similarity=0.324 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCC
Q 014001 194 DLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHD 273 (432)
Q Consensus 194 ~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~ 273 (432)
+..++.|++-|.||+-|- .+ +.+. ..++++++++ .++.++.-++|.++
T Consensus 96 ~~F~~~~~~aGv~Gviip---------DL-P~ee-------~~~~~~~~~~--------~gl~~I~lv~Ptt~------- 143 (250)
T PLN02591 96 DKFMATIKEAGVHGLVVP---------DL-PLEE-------TEALRAEAAK--------NGIELVLLTTPTTP------- 143 (250)
T ss_pred HHHHHHHHHcCCCEEEeC---------CC-CHHH-------HHHHHHHHHH--------cCCeEEEEeCCCCC-------
Confidence 344566899999999983 11 2232 2345555554 47888888877642
Q ss_pred CCCCCHHHHhccccEEEEeeccCCCCCCCCCCCCch-hHHHHHHHHhcCCCCCCCCCCCeEEEee
Q 014001 274 FGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLK-WISFTLQLLLGSPGIGTRSLARKIFLGI 337 (432)
Q Consensus 274 ~~~~d~~~l~~~vD~v~lMtYD~~~~~~pgp~aPl~-wv~~~l~~~~~~~~~~~~ip~~KivlGi 337 (432)
...++.+++..+.|+ |--+..+.+|..+.++ -+++.++.+.+ ...-.+++|.
T Consensus 144 --~~ri~~ia~~~~gFI---Y~Vs~~GvTG~~~~~~~~~~~~i~~vk~-------~~~~Pv~vGF 196 (250)
T PLN02591 144 --TERMKAIAEASEGFV---YLVSSTGVTGARASVSGRVESLLQELKE-------VTDKPVAVGF 196 (250)
T ss_pred --HHHHHHHHHhCCCcE---EEeeCCCCcCCCcCCchhHHHHHHHHHh-------cCCCceEEeC
Confidence 124677888775555 3222235566554432 35555666552 3344566663
No 150
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=21.23 E-value=5.1e+02 Score=23.16 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=67.8
Q ss_pred hHHHHHHHhCCCcEEeEEeeccCchhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCC------C---HH
Q 014001 156 AGWLLELRKGDALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILH------D---PE 226 (432)
Q Consensus 156 ~~~l~~~~~~~~kv~P~v~~~g~~~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~------~---~~ 226 (432)
...++++++.|+.|+ ..++... +-... ..+...||=|.+++ |... . ..
T Consensus 43 ~~nl~~L~~~g~~V~--~~VDat~--l~~~~------------~~~~~~FDrIiFNF-------PH~G~~~~~~~~~i~~ 99 (166)
T PF10354_consen 43 EENLEELRELGVTVL--HGVDATK--LHKHF------------RLKNQRFDRIIFNF-------PHVGGGSEDGKRNIRL 99 (166)
T ss_pred HHHHHHHhhcCCccc--cCCCCCc--ccccc------------cccCCcCCEEEEeC-------CCCCCCccchhHHHHH
Confidence 356777776777777 3333321 11111 44556799999984 5432 1 12
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccceEEEEEECCCCCCCCCCCCCCCCCHHHHhccccEEEEeeccCCCCCCCC
Q 014001 227 LRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPG 303 (432)
Q Consensus 227 d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsvavpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~~~pg 303 (432)
.++-+..|++..+..|++. |. +.|++.-. ..+...++.++++...++.+-..+|.....||
T Consensus 100 nr~Ll~~Ff~Sa~~~L~~~--------G~-IhVTl~~~-------~py~~W~i~~lA~~~gl~l~~~~~F~~~~ypg 160 (166)
T PF10354_consen 100 NRELLRGFFKSASQLLKPD--------GE-IHVTLKDG-------QPYDSWNIEELAAEAGLVLVRKVPFDPSDYPG 160 (166)
T ss_pred HHHHHHHHHHHHHHhcCCC--------CE-EEEEeCCC-------CCCccccHHHHHHhcCCEEEEEecCCHHHCCC
Confidence 3455677888888888863 32 34444321 11456799999999999999999987554454
No 151
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=21.11 E-value=3.4e+02 Score=25.72 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=48.0
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHHHHHhhccccccccccceEEEE
Q 014001 180 KELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVY 259 (432)
Q Consensus 180 ~~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL~~~L~~~~~~~~~k~~~~lsv 259 (432)
+-|+.+|+ +++ +...+.|.|-|.+-. |. . .+ .-..++.+|+ .|....+
T Consensus 67 HLMV~~p~---~~i----~~fa~agad~It~H~-------E~--~-~~---~~r~i~~Ik~------------~G~kaGv 114 (220)
T COG0036 67 HLMVENPD---RYI----EAFAKAGADIITFHA-------EA--T-EH---IHRTIQLIKE------------LGVKAGL 114 (220)
T ss_pred EEecCCHH---HHH----HHHHHhCCCEEEEEe-------cc--C-cC---HHHHHHHHHH------------cCCeEEE
Confidence 34677773 333 334556899999984 42 1 11 1224555554 2566788
Q ss_pred EECCCCCCCCCCCCCCCCCHHHHhccccEEEEeecc
Q 014001 260 VIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYD 295 (432)
Q Consensus 260 avpp~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD 295 (432)
++-|.++ -..++-+.+.||.+.+||-+
T Consensus 115 ~lnP~Tp---------~~~i~~~l~~vD~VllMsVn 141 (220)
T COG0036 115 VLNPATP---------LEALEPVLDDVDLVLLMSVN 141 (220)
T ss_pred EECCCCC---------HHHHHHHHhhCCEEEEEeEC
Confidence 8888754 23567788999999999976
No 152
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=21.07 E-value=4.9e+02 Score=26.04 Aligned_cols=65 Identities=20% Similarity=0.303 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhcCcCeEEeeccc---------cc-----ccCCCCCCHHHHHHHH-HHHHHHHHHhhccccccccc
Q 014001 188 LRDKAIDLILTECKEMEYDGIVLESWS---------TW-----TAYGILHDPELRNMAL-EFIKQLGNALHSVNSVRNRK 252 (432)
Q Consensus 188 ~r~~~i~~iv~~l~~~gfDGIdiD~w~---------~~-----~~~e~~~~~~d~~~~~-~fl~eL~~~L~~~~~~~~~k 252 (432)
..+.|++. ...+++=|||||.|..=. +. ..|++ +.+.|-.|. +.|+++|+++..
T Consensus 147 ii~~f~~A-A~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGG--s~ENR~Rf~~Eii~aIr~~vg~-------- 215 (341)
T PF00724_consen 147 IIEDFAQA-ARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGG--SLENRARFLLEIIEAIREAVGP-------- 215 (341)
T ss_dssp HHHHHHHH-HHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSS--SHHHHHHHHHHHHHHHHHHHTG--------
T ss_pred HHHHHHHH-HHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhh--hhchhhHHHHHHHHHHHHHhcC--------
Confidence 34555444 344566899999997321 10 11222 466776544 577777777764
Q ss_pred cceEEEEEECCC
Q 014001 253 QHLQLVYVIGPP 264 (432)
Q Consensus 253 ~~~~lsvavpp~ 264 (432)
++.|.+-+.+.
T Consensus 216 -d~~v~~Rls~~ 226 (341)
T PF00724_consen 216 -DFPVGVRLSPD 226 (341)
T ss_dssp -GGEEEEEEETT
T ss_pred -CceEEEEEeee
Confidence 57778888774
No 153
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=21.00 E-value=4.6e+02 Score=24.28 Aligned_cols=81 Identities=21% Similarity=0.186 Sum_probs=47.7
Q ss_pred ChHHHHHHHhCCCcEEeEEeeccCchhhcCCHHHHHHHHHHHHHHHHh-------cCc--CeEEeecccccccCCCCCCH
Q 014001 155 DAGWLLELRKGDALVLPRVVLEAFPKELLRKKKLRDKAIDLILTECKE-------MEY--DGIVLESWSTWTAYGILHDP 225 (432)
Q Consensus 155 d~~~l~~~~~~~~kv~P~v~~~g~~~~~l~~~~~r~~~i~~iv~~l~~-------~gf--DGIdiD~w~~~~~~e~~~~~ 225 (432)
++..+..+++.+..++- +...+-+..+-.+++.|...+..+++++.+ .|+ +=|-|| |.-+| ..++
T Consensus 105 ~~~~~~l~a~~~~~vV~-m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~D---Pgigf--~~~~ 178 (210)
T PF00809_consen 105 DPEMLPLAAEYGAPVVL-MHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERIILD---PGIGF--GKDP 178 (210)
T ss_dssp STTHHHHHHHHTSEEEE-ESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEEE---TTTTS--STTH
T ss_pred cchhhhhhhcCCCEEEE-EecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEeec---cccCc--CCCH
Confidence 66777777775555542 233433445666677777777777777777 798 889999 22222 1234
Q ss_pred HHHHHHHHHHHHHHHH
Q 014001 226 ELRNMALEFIKQLGNA 241 (432)
Q Consensus 226 ~d~~~~~~fl~eL~~~ 241 (432)
+..-.....+++++..
T Consensus 179 ~~~~~~l~~i~~~~~~ 194 (210)
T PF00809_consen 179 EQNLELLRNIEELKEL 194 (210)
T ss_dssp HHHHHHHHTHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4434444555555544
No 154
>cd07355 HN_L-delphilin-R2_like Second harmonin_N_like domain (repeat 2) of L-delphilin, and related domains. This subgroup contains the second of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin), and related domains. Delphilin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain in L-delphilin follows the second PDZ protein-binding domain, PDZ2; it is also found in the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta). It is a putative protein-binding module based on its sequence similarity to the harmonin N-domain. The first harmonin_N_like domain of L-delphilin belongs to a different subgroup and is missing from S-delphilin.
Probab=20.88 E-value=1.2e+02 Score=23.80 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=37.7
Q ss_pred hhcCCHHHHHHHHHHHHHHHHhcCcCeEEeecccccccCCCCCCHHHHHHHHHHHHHH
Q 014001 181 ELLRKKKLRDKAIDLILTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQL 238 (432)
Q Consensus 181 ~~l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~w~~~~~~e~~~~~~d~~~~~~fl~eL 238 (432)
+.+=++..|..+++.+.++-..-+.|++..|. |+.+..|+-+ ..-.|+.+|
T Consensus 13 ehlLt~~ER~~i~qaL~~y~~~Rnvd~Li~~v------~pVLDtPaK~-~iw~~i~~l 63 (80)
T cd07355 13 EHLLTPPERYGIKKALEDYFQHRNIDTLIVDV------YPVLDTPAKQ-VIWQYIYQL 63 (80)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhccHHHHHhhh------hhhcCCHHHH-HHHHHHHHH
Confidence 34557889999999999999999999999997 5666455544 344454443
No 155
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=20.80 E-value=33 Score=33.11 Aligned_cols=31 Identities=32% Similarity=0.340 Sum_probs=0.0
Q ss_pred hcccCccccccceeEeeeehhhhhhheeeee
Q 014001 27 DQFSDSASDRKLITIFVIFFIVIPTVSVLLY 57 (432)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (432)
...+++.--+-.|++.++|++||+.+.-++|
T Consensus 206 g~~~~~slq~~~iAL~sl~SLVIGFvlG~l~ 236 (273)
T PF02404_consen 206 GSISDSSLQWPAIALPSLFSLVIGFVLGALY 236 (273)
T ss_dssp -------------------------------
T ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455567778899999988776654443
No 156
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=20.55 E-value=3.5e+02 Score=32.41 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcCeEEeec
Q 014001 184 RKKKLRDKAIDLILTECKEMEYDGIVLES 212 (432)
Q Consensus 184 ~~~~~r~~~i~~iv~~l~~~gfDGIdiD~ 212 (432)
+++..|+-+++++.-+++ +|+||.-+|.
T Consensus 316 ~~p~v~~~i~d~lr~Wv~-~gVDGfRfDl 343 (1221)
T PRK14510 316 ERPFILRLPMDVLRSWAK-RGVDGFRLDL 343 (1221)
T ss_pred CCHHHHHHHHHHHHHHHH-hCCCEEEEec
Confidence 468888888888888888 9999999994
No 157
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=20.42 E-value=1.7e+02 Score=31.59 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=22.6
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCcCeEEeec
Q 014001 183 LRKKKLRDKAIDLILTECKEMEYDGIVLES 212 (432)
Q Consensus 183 l~~~~~r~~~i~~iv~~l~~~gfDGIdiD~ 212 (432)
..+|+.|+.+++.+.-++ +.|+||+-+|.
T Consensus 173 ~~np~V~~~l~~~~~~W~-~~GvDGfRlDa 201 (551)
T PRK10933 173 WENPAVRAELKKVCEFWA-DRGVDGLRLDV 201 (551)
T ss_pred CCCHHHHHHHHHHHHHHH-HCCCcEEEEcc
Confidence 357899988886555554 79999999994
No 158
>PRK10260 L,D-transpeptidase; Provisional
Probab=20.34 E-value=1.3e+02 Score=29.91 Aligned_cols=36 Identities=6% Similarity=0.053 Sum_probs=30.6
Q ss_pred eeEeeccCCC--ChhHHHHhccccCCCCHHHHHHHcCCCCCC
Q 014001 58 CTKYSTRANR--SATHMHQRGLVKTDVNYQEILTENSKVSEN 97 (432)
Q Consensus 58 ~~~~~~~~gd--t~~~i~~r~lv~~~~~~~~il~~~~~~~~~ 97 (432)
-+.|+++.|+ ++..|++| +++.+..|++.|....+.
T Consensus 40 ~~~~~v~~~~~~~le~iA~~----f~~g~~~l~~aNPgvdp~ 77 (306)
T PRK10260 40 NQVITIPEGNTQPLEYFAAE----YQMGLSNMMEANPGVDTF 77 (306)
T ss_pred cEEEEeCCCCCchHHHHHHH----hCCCHHHHHHhCcCCCCC
Confidence 4578999966 49999999 999999999999877643
No 159
>PRK10190 L,D-transpeptidase; Provisional
Probab=20.20 E-value=1.3e+02 Score=29.96 Aligned_cols=36 Identities=6% Similarity=0.038 Sum_probs=30.6
Q ss_pred eeEeeccCCC--ChhHHHHhccccCCCCHHHHHHHcCCCCCC
Q 014001 58 CTKYSTRANR--SATHMHQRGLVKTDVNYQEILTENSKVSEN 97 (432)
Q Consensus 58 ~~~~~~~~gd--t~~~i~~r~lv~~~~~~~~il~~~~~~~~~ 97 (432)
-+.|+++.+| ++..|++| +++.+..|++.|......
T Consensus 37 ~~~~~v~~~~~~~le~iA~~----f~~g~~~l~~aNPgvd~~ 74 (310)
T PRK10190 37 SLTVTVPDHNTQPLETFAAQ----YGQGLSNMLEANPGADVF 74 (310)
T ss_pred eEEEEecCCCCccHHHHHHH----hCCCHHHHHHhCCCCCCC
Confidence 4568898866 58899999 999999999999877653
No 160
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=20.06 E-value=7.9e+02 Score=23.67 Aligned_cols=87 Identities=10% Similarity=0.175 Sum_probs=53.9
Q ss_pred CCCCHHHHhccccEEEEeeccCCCC---------C-----CCCCCCCchhHHHHHHHHhcCCCCCCCCCCCeEEE---ee
Q 014001 275 GPVDLQSLSDAVDGFSLMTYDFSGP---------H-----NPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFL---GI 337 (432)
Q Consensus 275 ~~~d~~~l~~~vD~v~lMtYD~~~~---------~-----~pgp~aPl~wv~~~l~~~~~~~~~~~~ip~~Kivl---Gi 337 (432)
+..+.+.+.+++|.+-|=+.+.... + ..|....+.-+..+++++.. .|. ++|+| |+
T Consensus 98 d~~~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~-----~Gn--~~i~l~~rG~ 170 (260)
T TIGR01361 98 DPRDVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILS-----SGN--GNVILCERGI 170 (260)
T ss_pred ChhhHHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHH-----cCC--CcEEEEECCC
Confidence 3457788889999999999987664 2 23445456667788888874 232 46777 56
Q ss_pred ccc-ccccccCCCCCCCccCHHHHHHHHHhCCCceEeecC
Q 014001 338 NFY-GNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKN 376 (432)
Q Consensus 338 pfY-G~~w~~~~~~~~~~i~~~~~~~l~~~~~~~~~wD~~ 376 (432)
+.| ++.. ..+....+..+.+..+.++.+|..
T Consensus 171 s~y~~~~~--------~~~dl~~i~~lk~~~~~pV~~ds~ 202 (260)
T TIGR01361 171 RTFEKATR--------NTLDLSAVPVLKKETHLPIIVDPS 202 (260)
T ss_pred CCCCCCCc--------CCcCHHHHHHHHHhhCCCEEEcCC
Confidence 566 4321 223333333444445677777643
Done!