Query 014002
Match_columns 432
No_of_seqs 245 out of 1676
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 00:53:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03036 glutamine synthetase; 100.0 4E-123 8E-128 957.5 43.0 432 1-432 1-432 (432)
2 PLN02284 glutamine synthetase 100.0 5E-98 1E-102 758.6 38.8 347 64-413 7-353 (354)
3 KOG0683 Glutamine synthetase [ 100.0 5.6E-85 1.2E-89 643.1 21.4 352 66-419 19-374 (380)
4 COG0174 GlnA Glutamine synthet 100.0 2.4E-83 5.2E-88 662.9 33.9 326 75-415 12-361 (443)
5 TIGR00653 GlnA glutamine synth 100.0 1.1E-79 2.3E-84 643.2 29.7 318 90-415 19-375 (460)
6 PRK09469 glnA glutamine synthe 100.0 1.7E-78 3.7E-83 635.1 30.9 326 82-416 16-384 (469)
7 TIGR03105 gln_synth_III glutam 100.0 8.8E-78 1.9E-82 625.2 28.3 317 82-415 11-354 (435)
8 PF00120 Gln-synt_C: Glutamine 100.0 6.8E-68 1.5E-72 517.5 18.3 240 163-411 1-259 (259)
9 COG3968 Uncharacterized protei 99.8 1.5E-17 3.2E-22 168.6 15.4 225 182-420 214-509 (724)
10 PF03951 Gln-synt_N: Glutamine 99.5 2.5E-14 5.5E-19 117.2 8.1 68 90-157 9-84 (84)
11 TIGR02050 gshA_cyan_rel unchar 98.6 2.3E-06 4.9E-11 85.5 18.7 130 185-348 1-156 (287)
12 PRK13517 carboxylate-amine lig 98.6 1.4E-06 3.1E-11 89.9 16.1 132 183-348 10-167 (373)
13 PRK13516 gamma-glutamyl:cystei 98.5 6.5E-06 1.4E-10 85.1 17.5 189 183-411 11-260 (373)
14 PRK13515 carboxylate-amine lig 98.4 9.9E-06 2.2E-10 83.6 16.4 131 183-348 5-161 (371)
15 PLN02611 glutamate--cysteine l 97.9 0.00015 3.3E-09 77.0 14.2 152 166-348 50-246 (482)
16 PRK13518 carboxylate-amine lig 97.7 0.00017 3.6E-09 74.2 10.1 95 247-348 49-169 (357)
17 TIGR01436 glu_cys_lig_pln glut 97.5 0.0019 4.2E-08 68.3 15.2 154 167-348 5-203 (446)
18 TIGR02048 gshA_cyano glutamate 97.5 0.00084 1.8E-08 69.6 11.6 92 248-346 31-148 (376)
19 PF04107 GCS2: Glutamate-cyste 97.5 0.00066 1.4E-08 67.6 10.5 96 246-347 34-158 (288)
20 COG2170 Uncharacterized conser 97.3 0.002 4.4E-08 65.3 11.2 188 183-413 2-253 (369)
21 TIGR03444 gshA_related glutama 93.5 0.23 5E-06 51.8 7.6 89 256-348 70-186 (390)
22 KOG0683 Glutamine synthetase [ 80.4 0.53 1.2E-05 48.3 -0.0 58 347-414 285-342 (380)
23 cd04869 ACT_GcvR_2 ACT domains 80.2 4 8.6E-05 32.1 5.1 65 230-296 11-81 (81)
24 COG3572 GshA Gamma-glutamylcys 77.7 6 0.00013 41.3 6.6 45 249-294 91-136 (456)
25 PF12224 Amidoligase_2: Putati 74.9 35 0.00076 32.8 10.9 22 386-407 224-245 (252)
26 PF13740 ACT_6: ACT domain; PD 74.8 7.1 0.00015 30.8 5.0 62 230-294 14-75 (76)
27 TIGR02778 ligD_pol DNA polymer 72.9 14 0.00031 36.3 7.6 110 254-380 113-225 (245)
28 PF06877 RraB: Regulator of ri 71.9 23 0.00049 29.5 7.7 94 167-291 3-98 (104)
29 cd04872 ACT_1ZPV ACT domain pr 71.5 7.1 0.00015 31.5 4.4 67 230-297 13-79 (88)
30 cd04870 ACT_PSP_1 CT domains f 71.3 9.6 0.00021 29.8 5.0 65 230-296 11-75 (75)
31 cd04863 MtLigD_Pol_like MtLigD 68.5 22 0.00048 34.7 7.8 111 253-380 100-213 (231)
32 PRK00194 hypothetical protein; 67.6 10 0.00022 30.6 4.6 66 230-296 15-80 (90)
33 cd04861 LigD_Pol_like LigD_Pol 63.8 51 0.0011 32.1 9.2 110 254-380 97-209 (227)
34 PRK02471 bifunctional glutamat 63.8 8.1 0.00018 43.9 4.3 16 183-198 18-33 (752)
35 KOG0558 Dihydrolipoamide trans 62.2 7.1 0.00015 40.2 3.1 27 271-297 276-302 (474)
36 cd04864 LigD_Pol_like_1 LigD_P 60.9 37 0.0008 33.1 7.7 110 253-380 98-210 (228)
37 cd04866 LigD_Pol_like_3 LigD_P 59.5 41 0.00089 32.7 7.7 112 253-380 91-205 (223)
38 cd04862 PaeLigD_Pol_like PaeLi 58.5 74 0.0016 31.0 9.3 112 252-380 95-209 (227)
39 cd04893 ACT_GcvR_1 ACT domains 55.4 35 0.00076 26.9 5.6 63 230-295 13-75 (77)
40 cd04865 LigD_Pol_like_2 LigD_P 53.3 60 0.0013 31.7 7.7 110 254-380 98-210 (228)
41 TIGR02776 NHEJ_ligase_prk DNA 47.2 77 0.0017 34.9 8.3 112 253-380 389-503 (552)
42 PRK05972 ligD ATP-dependent DN 44.0 1.3E+02 0.0028 35.0 9.7 110 254-380 683-795 (860)
43 PRK11191 RNase E inhibitor pro 38.8 2.4E+02 0.0052 25.4 8.7 92 169-291 13-107 (138)
44 PRK13011 formyltetrahydrofolat 35.5 69 0.0015 32.1 5.3 65 230-296 19-85 (286)
45 PF14395 COOH-NH2_lig: Phage p 33.6 67 0.0014 31.9 4.7 56 259-316 52-108 (261)
46 PF04468 PSP1: PSP1 C-terminal 30.7 57 0.0012 26.7 3.2 60 229-293 25-84 (88)
47 COG3285 Predicted eukaryotic-t 30.5 3.6E+02 0.0077 27.4 9.2 69 242-317 107-180 (299)
48 PRK09633 ligD ATP-dependent DN 30.3 1.5E+02 0.0033 33.1 7.3 111 254-380 431-544 (610)
49 PRK06027 purU formyltetrahydro 29.1 1.2E+02 0.0025 30.5 5.7 66 230-296 18-85 (286)
50 PRK11589 gcvR glycine cleavage 29.1 54 0.0012 30.9 3.1 73 220-297 100-178 (190)
51 cd04875 ACT_F4HF-DF N-terminal 27.6 78 0.0017 24.3 3.4 60 230-291 11-73 (74)
52 COG4456 VagC Virulence-associa 26.0 48 0.001 26.7 1.8 28 368-396 7-34 (74)
53 COG4519 Uncharacterized protei 25.6 2E+02 0.0043 23.7 5.3 24 165-194 34-57 (95)
54 COG3364 Zn-ribbon containing p 24.6 42 0.00092 28.7 1.4 23 240-263 55-77 (112)
55 cd04871 ACT_PSP_2 ACT domains 24.3 1.3E+02 0.0029 24.2 4.3 62 229-295 11-83 (84)
56 PF00311 PEPcase: Phosphoenolp 23.1 1.5E+02 0.0033 34.1 5.9 62 228-295 415-482 (794)
57 smart00874 B5 tRNA synthetase 20.8 1.8E+02 0.0038 22.2 4.2 48 235-290 24-71 (71)
58 TIGR00629 uvde UV damage endon 20.3 9.3E+02 0.02 24.6 10.6 94 229-346 52-147 (312)
No 1
>PLN03036 glutamine synthetase; Provisional
Probab=100.00 E-value=3.8e-123 Score=957.49 Aligned_cols=432 Identities=91% Similarity=1.475 Sum_probs=408.2
Q ss_pred CCccCCCCcceeeecccccCCCCCchhhhhhhHHHHHhhccCcccccceEEEEeecchhHHHHHHHHhccCCCCCCCeEE
Q 014002 1 MAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKII 80 (432)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (432)
|||||+||+||||||+|.++.+.++++++|+|+++||+|++......+||++++......+..++.|++++..+|.++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (432)
T PLN03036 1 MAQILAPSPQCQMRVPKNSAVAAPMTSKLWSSLVLKQKKKGTAKVSGKFRVLALQSENSTVNRVEDLLNLDTTPYTDRII 80 (432)
T ss_pred CCcccccccccccCCCCCCCcccccccceecccchhhhhhhhhhcccceeeeeccccchhhhhHHHHhhhcccccCCeEE
Confidence 99999999999999999999999999999999999999998877789999999776654577788888888777899999
Q ss_pred EEEEEEeCccccccceEEEEeccCCCCCCCCCccccCCCCCCCCCCCccEEEEEEeccccCCCCCCeEEEEEEEecCCCC
Q 014002 81 AEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGE 160 (432)
Q Consensus 81 ~~yvwidg~g~Dlrgk~r~~~~p~~~~~~~~~~~fdgss~g~~~~~~~D~~L~PD~~~~~P~~~~~~a~Vlcd~~~~dG~ 160 (432)
+|||||||++.|||||+|++.+|+++++++++|+|||||+||++++++|++|+||+++++||+++++++|+||+|++||+
T Consensus 81 ~~yiw~~g~~~dlrgk~r~~~~~~~~~~~~~~w~fDGSs~g~a~~~~sD~~l~PDTl~~~Pw~~~~~a~Vlcd~y~~dG~ 160 (432)
T PLN03036 81 AEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGE 160 (432)
T ss_pred EEEEEeCCCCCCCCCCeEEeCccccccccCCceeeecCccCCCcCCCCCEEEEccEEEECCcCCCCeEEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999876799999999999999
Q ss_pred cCCCCHHHHHHHHHHhhccCccccEEEeeeeEEEeccCCCCCCCCCCCCCCCCCCCcccccccChhhHHHHHHHHHHHHH
Q 014002 161 PIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACL 240 (432)
Q Consensus 161 P~~~~pR~~Lk~~l~~l~~~G~~~~~G~E~EF~L~~~~~~~~~g~p~~~~p~~~g~yy~~~~~~~~~~~~i~~~i~~al~ 240 (432)
|++.|||+.|++++++++..|+++++|+|+|||||+.+.+++.|||.+++|.++++|||..+.+..+.++++++|+++|+
T Consensus 161 P~~~dpR~~L~~vl~~~~~~g~~p~~G~E~EF~Lf~~~~~~~~G~~~~~~p~p~g~yy~~~~~d~~~~~~i~~~i~~a~~ 240 (432)
T PLN03036 161 PIPTNKRHRAAEIFSNKKVVDEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDISDAHYKACL 240 (432)
T ss_pred CCCCCHHHHHHHHHHHhcccCCeEEEEeeeEEEEEEcccccccCCCCCCccCCCCCcCCCchhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999889999999999999999876445778887788999999999998888888999999999999
Q ss_pred HcCCceeeecCCCCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCCCCceeeeeeccccccCC
Q 014002 241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREE 320 (432)
Q Consensus 241 ~~GI~ie~~h~E~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~~GsG~H~H~Sl~~~~~~ 320 (432)
++||+|+++|+|+|||||||+++|+++|+|||+++++|++||+||++||++|||||||+.++|+|||||+|+||++++++
T Consensus 241 ~~GI~Ie~~~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~gd~~GSGmHiH~Sl~d~r~~ 320 (432)
T PLN03036 241 YAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREE 320 (432)
T ss_pred HCCCCeEEEEcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCCCCcCCCCceeEechhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999877899999999999998766
Q ss_pred CchHHHHHHHHHHHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeecccCCCCCccEEEecCCCCCCCH
Q 014002 321 GGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDP 400 (432)
Q Consensus 321 ~g~~~~~~~iaGl~L~H~~al~a~~~nsYkRL~~~~~ap~~~~~sWG~~NR~a~IRvp~~~~~~~~~r~E~R~pda~aNP 400 (432)
+|.+.++++++||+|+|++||+||++||||||+|++|||+|++++||++||+++||||......+++|||+|+||++|||
T Consensus 321 gg~~~~~~~i~gl~l~H~~~i~A~~~NsykRL~~~~ea~~p~~~swG~~NR~asIRIP~~~~~~~~~riE~R~pda~aNP 400 (432)
T PLN03036 321 GGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDTFSWGVANRGCSIRVGRDTEKKGKGYLEDRRPASNMDP 400 (432)
T ss_pred chHHHHHHHHhhHHHHHHHHHHhhhcChhhccCCCccccCCccceEeccCCcceEEECCCCCCCcccEEEEeCCCCCCCH
Confidence 68899999999977999999999999999999999999888899999999999999998764444789999999999999
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHhhhhccC
Q 014002 401 YVVTSLLAETTILWEPTLEAEALAAQKLALNV 432 (432)
Q Consensus 401 YLalAailaagl~G~~~~~~~~~~~~~~~~~~ 432 (432)
|||+|+|+.++++.+|+||||+||||||+|||
T Consensus 401 YLv~aai~~t~~~~~~~~~~~~~~~~~~~~~~ 432 (432)
T PLN03036 401 YIVTSLLAETTILWEPTLEAEALAAQKLSLNV 432 (432)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHhhhhccCC
Confidence 99999999999999999999999999999997
No 2
>PLN02284 glutamine synthetase
Probab=100.00 E-value=5e-98 Score=758.60 Aligned_cols=347 Identities=82% Similarity=1.401 Sum_probs=322.0
Q ss_pred HHHHhccCCCCCCCeEEEEEEEEeCccccccceEEEEeccCCCCCCCCCccccCCCCCCCCCCCccEEEEEEeccccCCC
Q 014002 64 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR 143 (432)
Q Consensus 64 ~~~~~~~~~~~~~~~v~~~yvwidg~g~Dlrgk~r~~~~p~~~~~~~~~~~fdgss~g~~~~~~~D~~L~PD~~~~~P~~ 143 (432)
+++|+.+ ++.++++++|||||+.|+||+||+|++.+|++.+++.++|+|||||+|+..+++||++|+||+++++||+
T Consensus 7 ~~~~~~~---~~~~~~~~~y~wi~~~~~dl~g~~~~~~~~~~~~~~~~~~~fdGssi~~~~~~~sD~~l~PDt~~~~Pw~ 83 (354)
T PLN02284 7 LINLNLS---DSTDKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR 83 (354)
T ss_pred hHhhccc---CcCCeEEEEEEEEEEEecCCCCceEEecccccccccCCceeecCCCCCCccCCCceEEEEccEEEECCCC
Confidence 5555554 5689999999999999999999999999999999999999999999999888999999999999999998
Q ss_pred CCCeEEEEEEEecCCCCcCCCCHHHHHHHHHHhhccCccccEEEeeeeEEEeccCCCCCCCCCCCCCCCCCCCccccccc
Q 014002 144 GGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGA 223 (432)
Q Consensus 144 ~~~~a~Vlcd~~~~dG~P~~~~pR~~Lk~~l~~l~~~G~~~~~G~E~EF~L~~~~~~~~~g~p~~~~p~~~g~yy~~~~~ 223 (432)
++++++|+||++++||+|++.|||++|+++++++++.|+++++|+|+|||||+.+..++.||+.+++|.++++||+..+.
T Consensus 84 ~~~~~~vlcdv~~~dG~p~~~dPR~vL~r~~~~~~~~g~~~~~G~E~EF~lf~~~~~~~~g~~~~~~~~~~~~y~~~~~~ 163 (354)
T PLN02284 84 GGNNILVMCDAYTPAGEPIPTNKRAKAAKIFSHPDVAAEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGVGA 163 (354)
T ss_pred CCCeEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHhcCCceeEEeceEEEEEecCCcccCCCCCCCcccCCCCcccCcch
Confidence 76689999999999999999999999999999998899999999999999998654446677766688899999988887
Q ss_pred ChhhHHHHHHHHHHHHHHcCCceeeecCCCCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCC
Q 014002 224 DKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDW 303 (432)
Q Consensus 224 ~~~~~~~i~~~i~~al~~~GI~ie~~h~E~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~ 303 (432)
+..+.++++++|+++|+++||+|+++|||+|||||||+++|+++|++||+++++|++||+||++||++|||||||+.++|
T Consensus 164 ~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~~~~~ 243 (354)
T PLN02284 164 DKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIPGDW 243 (354)
T ss_pred hhHHHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCCCCCC
Confidence 77778999999999999999999999999999999999999999999999999999999999999999999999998768
Q ss_pred CCceeeeeeccccccCCCchHHHHHHHHHHHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeecccCCC
Q 014002 304 NGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEK 383 (432)
Q Consensus 304 ~GsG~H~H~Sl~~~~~~~g~~~~~~~iaGl~L~H~~al~a~~~nsYkRL~~~~~ap~~~~~sWG~~NR~a~IRvp~~~~~ 383 (432)
+|||||+|+||+++++++|.+.++++++|+.|+|+++|+||++||||||+|++|||.+.+++||.+||+++||||.....
T Consensus 244 ~GSGmH~H~SL~~~~~~gg~~~~~~~l~~~~l~h~~~l~a~~~NSYkRL~p~~eap~~~~~~wg~~NRsa~iRIP~~~~~ 323 (354)
T PLN02284 244 NGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINTFSWGVANRGASIRVGRDTEK 323 (354)
T ss_pred ccCcceeecChhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhcCcHhhcCCCccCcccccceeecCCCceeEEECCCCCC
Confidence 99999999999987666788999999999889999999999999999999999999877999999999999999977643
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHHHHhhc
Q 014002 384 QGKGYLEDRRPASNMDPYVVTSLLAETTIL 413 (432)
Q Consensus 384 ~~~~r~E~R~pda~aNPYLalAailaagl~ 413 (432)
++++|||+|+||++|||||++|++|+|++.
T Consensus 324 ~~~~riE~R~pd~~aNPYLa~aaila~~~~ 353 (354)
T PLN02284 324 EGKGYFEDRRPASNMDPYVVTSMIAETTIL 353 (354)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHHHhc
Confidence 346799999999999999999999999986
No 3
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-85 Score=643.07 Aligned_cols=352 Identities=62% Similarity=1.106 Sum_probs=339.7
Q ss_pred HHhccCCCCCCCeEEEEEEEEeCccccccceEEEEeccCCCCCCCCCccccCCCCCCCCCCCccEEEEEEeccccCCCCC
Q 014002 66 DLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGG 145 (432)
Q Consensus 66 ~~~~~~~~~~~~~v~~~yvwidg~g~Dlrgk~r~~~~p~~~~~~~~~~~fdgss~g~~~~~~~D~~L~PD~~~~~P~~~~ 145 (432)
.++.|. ++.++|+++|||||++|.++|+|+|+++.+++.++++|.|+|||||++|+++.+||++|+|..++++||+.|
T Consensus 19 ~~~~L~--~~~~kv~a~YVwidg~ge~~rsk~rt~d~~~~~~~~lp~wnydgsst~QA~g~nSd~~l~Pva~~~dPfr~g 96 (380)
T KOG0683|consen 19 EYLYLR--AKRKKVQAEYVWIDGTGENLRSKTRTLDAEPSSISELPIWNYDGSSTGQAPGENSDVYLRPVAIYPDPFRNG 96 (380)
T ss_pred hhcccc--ccCceEEEEEEEecCccccchhhcccccCCccCcccCccccccCcccccccCCCCceEEeehhhcCCcccCC
Confidence 455553 457999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEEecCCCCcCCCCHHHHHHHHHHhhccCccccEEEeeeeEEEeccCCCCCCCCCCCCCCCCCCCcccccccCh
Q 014002 146 NNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADK 225 (432)
Q Consensus 146 ~~a~Vlcd~~~~dG~P~~~~pR~~Lk~~l~~l~~~G~~~~~G~E~EF~L~~~~~~~~~g~p~~~~p~~~g~yy~~~~~~~ 225 (432)
++.+|+|++++.+|.|.+++.|..|.+++..+.-...+||||+|+||++++.+..+|+|||.++||.+||+|||+++.++
T Consensus 97 ~Nilv~c~~~~~~~~P~~tn~R~~c~~~~~~~~~~~~~PWfg~Eqeyt~l~~~~~~p~gwp~~GFp~Pqgpyyc~VGad~ 176 (380)
T KOG0683|consen 97 NNILVMCDTYDFDGKPTETNKRVACARIMPKLSTKDTEPWFGMEQEYTLLDALDGHPFGWPKGGFPGPQGPYYCGVGADR 176 (380)
T ss_pred CCEEEEeeccCCCCCcccccchhhHHHHhccccccccCCchhhhHHHhhhccccCCcccCCccCCCCCCCCceeeccccc
Confidence 99999999999999999999999999999998767899999999999999997688999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHcCCceeeecCCCCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCCCC
Q 014002 226 SFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNG 305 (432)
Q Consensus 226 ~~~~~i~~~i~~al~~~GI~ie~~h~E~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~~G 305 (432)
.|.+|++++||++|.++||++.++|.|++||||||+++||.|+.|||++|++|++|++||+++|+.|||.|||..++|+|
T Consensus 177 ~~~rdiveahy~acLyaGl~i~G~N~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~pKp~~g~Wng 256 (380)
T KOG0683|consen 177 VFGRDIVEAHYRACLYAGLNISGINVEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDPKPILGDWNG 256 (380)
T ss_pred cccchhhhhhHHHHHhhheeeccccccccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecCCCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeccccccCCCchHHHHHHHHHHHHhHHHHhhcc----cccccccCCCCCCCCCCCceeeccCCCcceeeecccC
Q 014002 306 AGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAY----GEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRET 381 (432)
Q Consensus 306 sG~H~H~Sl~~~~~~~g~~~~~~~iaGl~L~H~~al~a~----~~nsYkRL~~~~~ap~~~~~sWG~~NR~a~IRvp~~~ 381 (432)
+|||+|+|+.+|+.++|.+.++.++.+++++|..|+.+| +.+|-+||++.||++++++|+||+.||+++||||+.+
T Consensus 257 aG~Htn~ST~~mr~~~g~~~i~~a~~~ls~rh~~hi~~ydp~~G~dN~rrltg~hEt~~i~~Fs~GvAnr~~siri~r~v 336 (380)
T KOG0683|consen 257 AGCHTNFSTKEMREAGGLKIIEEAIPKLSKRHREHIAAYDPKGGKDNERRLTGRHETGSIDNFSWGVANRNPSIRIPRTV 336 (380)
T ss_pred cccccccchhHHHhccCHHHHHHHhhhcchhhhhhhhhcCccCCccchhhhcCCCccccccccccccccCCceeeechhh
Confidence 999999999999999999999999999999999999999 7799999999999999999999999999999999999
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCCCCch
Q 014002 382 EKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLE 419 (432)
Q Consensus 382 ~~~~~~r~E~R~pda~aNPYLalAailaagl~G~~~~~ 419 (432)
...+++++|+|+||++++||+|+.+++.+.|+.++.||
T Consensus 337 a~~~~Gy~edrrP~sN~Dpy~Vt~~~~~t~l~~~~~~~ 374 (380)
T KOG0683|consen 337 AAEGKGYFEDRRPSSNCDPYAVTLMIIPTTLLEAVELE 374 (380)
T ss_pred hcccccccccCCCcCCCCcceeeHHHhhHHHhcccchh
Confidence 88889999999999999999999999999999988755
No 4
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-83 Score=662.90 Aligned_cols=326 Identities=26% Similarity=0.413 Sum_probs=284.0
Q ss_pred CCCeEEEEEEEEeCccccccceEEEEeccCC----CCCCCC--CccccCCCC-CCCCCCCccEEEEEEe--ccccCCCCC
Q 014002 75 YTDKIIAEYIWIGGTGIDMRSKSKTISKPVE----HPSELP--KWNYDGSST-GQAPGEDSEVILYPQA--IFKDPFRGG 145 (432)
Q Consensus 75 ~~~~v~~~yvwidg~g~Dlrgk~r~~~~p~~----~~~~~~--~~~fdgss~-g~~~~~~~D~~L~PD~--~~~~P~~~~ 145 (432)
+.++..++++|+| +.|+.|++.+|++ .++... +..|||||+ |+...++||++|+||+ ++++||+++
T Consensus 12 ~~~V~~v~~~f~D-----~~G~~r~k~ip~~~~~~~~~~~~~~g~~fdgss~~g~~~i~~sDm~l~Pd~~T~~~~Pw~~~ 86 (443)
T COG0174 12 ENGVKFVDLRFTD-----LNGVLRGKTIPAEKPVSVLAQLFEGGVVFDGSSIAGFEGIGESDMVLKPDLSTLVVDPWREG 86 (443)
T ss_pred hCCceEEEEEEEC-----CCCCeeeEEEecccchhHHHhhhccCcCcCCccccccCCCCCCCEEEeeccCceeeCCCCCC
Confidence 3455566666665 5667777778877 343333 466999999 7777689999999996 999999997
Q ss_pred CeEEEEEEEecCCCCcCCCCHHHHHHHHHHhhccCccc-cEEEeeeeEEEeccCCCCCCCCCCCCCCCCCCCcccccccC
Q 014002 146 NNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEV-PWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGAD 224 (432)
Q Consensus 146 ~~a~Vlcd~~~~dG~P~~~~pR~~Lk~~l~~l~~~G~~-~~~G~E~EF~L~~~~~~~~~g~p~~~~p~~~g~yy~~~~~~ 224 (432)
++++|+||+++++|+|++.|||++|+|+++++++.|+. +++|+|+|||||+.+...+. .+.+.++|+||+..+.+
T Consensus 87 ~ta~v~cdv~~~~g~p~~~dPR~vlkr~~~~l~~~G~~~~~~g~E~EFfLfd~~~~~~~----~~~~~~~~~yf~~~~~~ 162 (443)
T COG0174 87 PTARVLCDVYDPDGTPYPRDPRSVLKRALARLKDEGLAPAVVGPELEFFLFDRDGRDPD----GGRPADKGGYFDVAPLD 162 (443)
T ss_pred CcEEEEEEEECCCCCcCCCChHHHHHHHHHHHHhcCCccceeecceeEEEeecccCCcc----cCccCCCCcccCccccc
Confidence 79999999999999999999999999999999999998 59999999999997533221 15688999999999998
Q ss_pred hhhHHHHHHHHHHHHHHcCCceeeecCCCCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCCC
Q 014002 225 KSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWN 304 (432)
Q Consensus 225 ~~~~~~i~~~i~~al~~~GI~ie~~h~E~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~~ 304 (432)
+ ..+++++|+.+|+++||+||.+|||+|||||||++++++++++||+++++|++||+||++||++|||||||+.|+ +
T Consensus 163 ~--~~~~~~di~~~l~~~Gi~ie~~hhEva~gQ~EI~~~~~~~l~~AD~~~~~K~vvk~vA~~hG~~aTFMpKP~~g~-~ 239 (443)
T COG0174 163 E--AEDFRRDIVEALEAAGIEIEAIHHEVAPGQFEINLRFDDALKAADQIVIFKYVVKEVAEKHGLTATFMPKPFFGD-N 239 (443)
T ss_pred c--HHHHHHHHHHHHHHCCCCcEeccccccCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEeCCCCCCC-C
Confidence 7 588888889999999999999999999999999999999999999999999999999999999999999999996 9
Q ss_pred Cceeeeeecccccc------CCC---ch-HHHHHHHHHHHHhHHHHhhcccc---cccccC-CCCCCCCCCCceeeccCC
Q 014002 305 GAGCHTNYSTKSMR------EEG---GY-ETIKKAILNLSLRHKEHISAYGE---GNERRL-TGKHETASIDSFSWGVAN 370 (432)
Q Consensus 305 GsG~H~H~Sl~~~~------~~~---g~-~~~~~~iaGl~L~H~~al~a~~~---nsYkRL-~~~~~ap~~~~~sWG~~N 370 (432)
|||||+|+|||+.+ +++ |+ ..+++||+|| |+|+++++||++ |||||| +|..|||+ +++||.+|
T Consensus 240 GSGMH~H~Sl~~~dg~nlF~d~~~~~~lS~~~~~~igGi-lkha~~~~ai~~PtvNSYkRl~vp~e~AP~--~~~wg~~N 316 (443)
T COG0174 240 GSGMHVHQSLWDKDGGNLFADEDGYAGLSETALHFIGGI-LKHAPALTAITAPTVNSYKRLGVPYEWAPT--YIAWGVRN 316 (443)
T ss_pred CCceeEEEEEecCCCCccccCCCCcccHHHHHHHHHHHH-HHHHHHHHhHhCCCcchhhhcCCCcccCcc--hhcccccC
Confidence 99999999999643 122 23 3468999999 999999999986 999999 66244888 99999999
Q ss_pred CcceeeecccCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCC
Q 014002 371 RGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWE 415 (432)
Q Consensus 371 R~a~IRvp~~~~~~~~~r~E~R~pda~aNPYLalAailaagl~G~ 415 (432)
|+|+||||.+.....+.|||+|+||++|||||++||+|+|||+|+
T Consensus 317 Rsa~iRIP~~~~~~~~~RiE~R~pd~~aNPYLa~AaiL~Agl~GI 361 (443)
T COG0174 317 RSASVRIPASGANGKARRVEFRVPDPDANPYLAFAAILAAGLDGI 361 (443)
T ss_pred cceEEEeCCCCCCCCcceeEeeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999998854334679999999999999999999999999995
No 5
>TIGR00653 GlnA glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation.
Probab=100.00 E-value=1.1e-79 Score=643.17 Aligned_cols=318 Identities=25% Similarity=0.348 Sum_probs=277.1
Q ss_pred cccccceEEEEeccCCCCCC-C--CCccccCCCC-CCCCCCCccEEEEEEe--ccccCCCCCCeEEEEEEEecC-CCCcC
Q 014002 90 GIDMRSKSKTISKPVEHPSE-L--PKWNYDGSST-GQAPGEDSEVILYPQA--IFKDPFRGGNNILVICDTYTP-AGEPI 162 (432)
Q Consensus 90 g~Dlrgk~r~~~~p~~~~~~-~--~~~~fdgss~-g~~~~~~~D~~L~PD~--~~~~P~~~~~~a~Vlcd~~~~-dG~P~ 162 (432)
++|+.|+.|+|.+|++.+++ . .|.+|+++++ |+...+++|++|+||+ ++++||.++++++|+||+++. ||+|+
T Consensus 19 ~~Dl~G~~rgk~vp~~~~~~~~~~~G~~~~~~~~~~~~~~~~~D~~l~PD~~Tl~~~pw~~~~~a~v~~d~~~~~dg~p~ 98 (460)
T TIGR00653 19 FTDIKGKPQHVEIPASALDKEAFEEGIMFDGSSIRGFQGIEESDMLLKPDPSTAVIDPWRAEKTLRVICDVYEPFTGEPY 98 (460)
T ss_pred EECCCCCEeeEEEeHHHhhHHHhcCCeecccccccccccCCCCcEEEeccCCcceeccCCCCCcEEEEEEEEECCCCCCC
Confidence 55688899999999998864 3 4789999988 7666678999999998 999999776799999999998 99999
Q ss_pred CCCHHHHHHHHHHhhc-cCccccEEEeeeeEEEeccCCCCC-------------------CCCCCCCCCCCCCCcccccc
Q 014002 163 PTNKRHRAAEIFSNSK-VSAEVPWFGIEQEYTLLQQNVKWP-------------------LGWPVGAYPGPQGPYYCGAG 222 (432)
Q Consensus 163 ~~~pR~~Lk~~l~~l~-~~G~~~~~G~E~EF~L~~~~~~~~-------------------~g~p~~~~p~~~g~yy~~~~ 222 (432)
+.|||++|++++++++ +.|+++++|+|+|||||+.+.... .++ .+..|..++.||+..+
T Consensus 99 ~~~PR~~L~r~~~~l~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 177 (460)
T TIGR00653 99 ERDPRSIAKRAEEYLKSGIGDTAYFGPEPEFFLFDSVEFGSLANGSFYEVDSEEGRWNEESGN-RGYKPRDKGGYFPVAP 177 (460)
T ss_pred CCCHHHHHHHHHHHHHhCCCCceeEEcceEEEEEecCccCcccccceeeeccccccccccCCc-CCCcccCCccccCCCC
Confidence 9999999999999999 899999999999999998643221 011 0224556666777776
Q ss_pred cChhhHHHHHHHHHHHHHHcCCceeeecCCCCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCC
Q 014002 223 ADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGD 302 (432)
Q Consensus 223 ~~~~~~~~i~~~i~~al~~~GI~ie~~h~E~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~ 302 (432)
.+. ..+++++++++|+.+||+|+++|+|+|||||||++.|+++|++||+++++|++||+||++||+.|||||||+.+
T Consensus 178 ~~~--~~~~~~~i~~~l~~~Gi~v~~~~~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k~~ik~vA~~~G~~ATFmpKP~~~- 254 (460)
T TIGR00653 178 TDT--AVDIRREMVLYLEQLGFDVEVHHHEVATGQHEIDFKFDTLLKTADDIQTYKYVVKNVARKHGKTATFMPKPLFG- 254 (460)
T ss_pred ccc--HHHHHHHHHHHHHHcCCCceeeecCcCCCceeEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEecccCCC-
Confidence 665 46788888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeecccccc-----C---CCch-HHHHHHHHHHHHhHHHHhhcccc---cccccCCCCCCCCCCCceeeccCC
Q 014002 303 WNGAGCHTNYSTKSMR-----E---EGGY-ETIKKAILNLSLRHKEHISAYGE---GNERRLTGKHETASIDSFSWGVAN 370 (432)
Q Consensus 303 ~~GsG~H~H~Sl~~~~-----~---~~g~-~~~~~~iaGl~L~H~~al~a~~~---nsYkRL~~~~~ap~~~~~sWG~~N 370 (432)
++|||+|+|+|||+.. + +.|+ ...++||+|| |+|+++++||++ ||||||+|++|||+ +++||.+|
T Consensus 255 ~~GSG~H~H~Sl~d~g~n~F~d~~~~~~lS~~~~~fiaGi-L~h~~~l~a~~~PtvNSYkRl~p~~~ap~--~~~WG~~N 331 (460)
T TIGR00653 255 DNGSGMHCHQSLWKDGENLFAGEEGYAGLSETALYYIGGI-LKHAKALAAFTNPTVNSYKRLVPGYEAPV--YLAYSARN 331 (460)
T ss_pred CCcCceeEEECccCCCeeccCCCCCCcccCHHHHHHHHHH-HHHHHHhhhHhcCCCcchhhcCCCCcCcc--eeecccCC
Confidence 5999999999999732 1 1234 3458999999 999999999986 99999999999999 99999999
Q ss_pred CcceeeecccCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCC
Q 014002 371 RGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWE 415 (432)
Q Consensus 371 R~a~IRvp~~~~~~~~~r~E~R~pda~aNPYLalAailaagl~G~ 415 (432)
|+++||||.... +..+|||+|+||++|||||++||+|+||++|+
T Consensus 332 R~a~iRvp~~~~-~~~~riE~R~~da~aNPYLalAa~laAGl~Gi 375 (460)
T TIGR00653 332 RSALIRIPASGN-PKAKRIEFRFPDPSANPYLAFAAMLMAGLDGI 375 (460)
T ss_pred CCceEEecCCCC-CcCceEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999997541 24679999999999999999999999999995
No 6
>PRK09469 glnA glutamine synthetase; Provisional
Probab=100.00 E-value=1.7e-78 Score=635.07 Aligned_cols=326 Identities=22% Similarity=0.318 Sum_probs=277.7
Q ss_pred EEEEEeCccccccceEEEEeccCCCCCC-C--CCccccCCCC-CCCCCCCccEEEEEEe--ccccCCCCCCeEEEEEEEe
Q 014002 82 EYIWIGGTGIDMRSKSKTISKPVEHPSE-L--PKWNYDGSST-GQAPGEDSEVILYPQA--IFKDPFRGGNNILVICDTY 155 (432)
Q Consensus 82 ~yvwidg~g~Dlrgk~r~~~~p~~~~~~-~--~~~~fdgss~-g~~~~~~~D~~L~PD~--~~~~P~~~~~~a~Vlcd~~ 155 (432)
++|.+. ++|+.|+.|+|.+|++.+++ . .|..||++++ |+...+++|++|+||+ ++++||.+.++++|+||++
T Consensus 16 ~~v~~~--~~Dl~G~~rgk~ip~~~~~~~~~~~G~~f~~~~~~g~~~~~~~D~~l~PD~~Tl~~~Pw~~~~~a~v~~d~~ 93 (469)
T PRK09469 16 KFVDLR--FTDTKGKEQHVTIPAHQVNADFFEEGKMFDGSSIGGWKGINESDMVLMPDASTAVLDPFFEDSTLIIRCDIL 93 (469)
T ss_pred CEEEEE--EECCCCCEeEEEEEHHHhhHHHhcCCceeccccccccCcCCCCCEEEEEcCCccEECCcCCCCcEEEEEEEE
Confidence 444444 56788899999999998874 3 5789999988 7766678999999998 9999996546999999999
Q ss_pred cCC-CCcCCCCHHHHHHHHHHhhccCcc--ccEEEeeeeEEEeccCCC--CC-----------CCCCC---------CCC
Q 014002 156 TPA-GEPIPTNKRHRAAEIFSNSKVSAE--VPWFGIEQEYTLLQQNVK--WP-----------LGWPV---------GAY 210 (432)
Q Consensus 156 ~~d-G~P~~~~pR~~Lk~~l~~l~~~G~--~~~~G~E~EF~L~~~~~~--~~-----------~g~p~---------~~~ 210 (432)
+.+ |+|++.|||++|+|++++++++|+ ++.+|+|+|||||+.+.. .+ ..|+. +..
T Consensus 94 ~~~~g~p~~~~PR~iLkr~~~~l~~~G~~~~~~~g~ElEF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (469)
T PRK09469 94 EPGTMQGYDRDPRSIAKRAEDYLRSTGIADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIEAAWNSGTKYEGGNKGHR 173 (469)
T ss_pred ECCCCCcCCcCHHHHHHHHHHHHHHcCCCcceeEecceEEEEEeccccccCccccccccccchhcccccccccCCCCCCc
Confidence 985 899999999999999999999999 999999999999985420 00 11211 112
Q ss_pred CCCCCCcccccccChhhHHHHHHHHHHHHHHcCCceeeecCCCC-CCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcC
Q 014002 211 PGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVM-PGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAG 289 (432)
Q Consensus 211 p~~~g~yy~~~~~~~~~~~~i~~~i~~al~~~GI~ie~~h~E~g-pGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~G 289 (432)
|...+.||...+.+. ..+++++++++|+.+||+|+++|+|+| ||||||++.|.++|++||+++++|++||+||++||
T Consensus 174 ~~~~~~~y~~~~~~~--~~~~~~~i~~~l~~~Gi~v~~~h~E~g~~GQ~Ei~l~~~d~L~aaD~~~~~k~~vk~va~~~g 251 (469)
T PRK09469 174 PGVKGGYFPVPPVDS--SQDIRSAMCLVMEEMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHAFG 251 (469)
T ss_pred cCCCccccCCCcccc--hHHHHHHHHHHHHHCCCCcEEeeCCCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344455777777666 578899999999999999999999999 59999999999999999999999999999999999
Q ss_pred cEEeecccccCCCCCCceeeeeeccccccC-------CCchH-HHHHHHHHHHHhHHHHhhcccc---cccccCCCCCCC
Q 014002 290 VVLSLDPKPIEGDWNGAGCHTNYSTKSMRE-------EGGYE-TIKKAILNLSLRHKEHISAYGE---GNERRLTGKHET 358 (432)
Q Consensus 290 l~aTFmPKP~~~~~~GsG~H~H~Sl~~~~~-------~~g~~-~~~~~iaGl~L~H~~al~a~~~---nsYkRL~~~~~a 358 (432)
+.|||||||+.+ ++|||||+|+|||+... .+|++ ..++||+|| |+|+++++||++ ||||||+|++||
T Consensus 252 ~~atFmpKP~~~-~~GsG~H~H~Sl~~~g~N~F~~~~~~~ls~~~~~fiaGl-L~h~~~l~a~~~PtvNSYkRl~p~~~a 329 (469)
T PRK09469 252 KTATFMPKPMFG-DNGSGMHCHMSLSKNGVNLFAGDKYAGLSEQALYYIGGI-IKHAKAINALANPTTNSYKRLVPGYEA 329 (469)
T ss_pred CEEEEeccccCC-CCCceeEEEEeecCCCccccCCCCcCCcCHHHHHHHHHH-HHHHHHHHhhhcCCCchHhhcCCCCcC
Confidence 999999999999 59999999999998421 13343 457999999 999999999975 999999999999
Q ss_pred CCCCceeeccCCCcceeeecccCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCCC
Q 014002 359 ASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 416 (432)
Q Consensus 359 p~~~~~sWG~~NR~a~IRvp~~~~~~~~~r~E~R~pda~aNPYLalAailaagl~G~~ 416 (432)
|+ +++||.+||+++||||.... +..+|||+|+||++|||||++||+|+|||+|+.
T Consensus 330 p~--~~~WG~~NR~a~iRvp~~~~-~~~~riE~R~~da~aNPYL~~AaiLaAGldGI~ 384 (469)
T PRK09469 330 PV--MLAYSARNRSASIRIPVVAS-PKARRIEVRFPDPAANPYLCFAALLMAGLDGIK 384 (469)
T ss_pred cC--cceecCCCCcceEEeccCCC-CCCceEEecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999995222 245799999999999999999999999999953
No 7
>TIGR03105 gln_synth_III glutamine synthetase, type III. This family consists of the type III isozyme of glutamine synthetase, originally described in Rhizobium meliloti, where types I and II also occur.
Probab=100.00 E-value=8.8e-78 Score=625.18 Aligned_cols=317 Identities=20% Similarity=0.245 Sum_probs=269.7
Q ss_pred EEEEEeCccccccceEEEEeccCCCCCCC--CCccccCCCCC--CCCCCCccEEEEEEe--ccccCCCCCCeEEEEEEEe
Q 014002 82 EYIWIGGTGIDMRSKSKTISKPVEHPSEL--PKWNYDGSSTG--QAPGEDSEVILYPQA--IFKDPFRGGNNILVICDTY 155 (432)
Q Consensus 82 ~yvwidg~g~Dlrgk~r~~~~p~~~~~~~--~~~~fdgss~g--~~~~~~~D~~L~PD~--~~~~P~~~~~~a~Vlcd~~ 155 (432)
+||++. ++|+.|+.|+|.+|++.++++ .|.+|++++++ ....+++|++|+||+ ++++||.+ ++++|+||++
T Consensus 11 ~~v~~~--~~D~~G~~r~k~vp~~~~~~~~~~G~~~~~~~~~~~~~~~~~~D~~l~PD~~Tl~~~pw~~-~~a~v~~d~~ 87 (435)
T TIGR03105 11 KYFLAS--FVDLHGVQKAKLVPAEAIDHMATGGAGFAGFAAWGLGQSPADPDLMAIPDLDSLTQLPWQP-GVAWVAADLH 87 (435)
T ss_pred CEEEEE--EECCCCCeeEEEEeHHHHHHHHcCCCcccchhhhccCCCCCCCCEEEEeccccceeCCCCC-CeEEEEEEEe
Confidence 444444 556888999999999988765 46889988773 223367999999997 99999988 5999999997
Q ss_pred cCCCCcCCCCHHHHHHHHHHhhccCccccEEEeeeeEEEeccCCCCCCCCCCCCCCCCCCCcccccccChhhHHHHHHHH
Q 014002 156 TPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAH 235 (432)
Q Consensus 156 ~~dG~P~~~~pR~~Lk~~l~~l~~~G~~~~~G~E~EF~L~~~~~~~~~g~p~~~~p~~~g~yy~~~~~~~~~~~~i~~~i 235 (432)
. ||+|++.|||++|++++++++++|+++++|+|+|||||+.+.+... .+.+..+....+||+..+.+. ..+++++|
T Consensus 88 ~-~G~p~~~~PR~vL~r~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i 163 (435)
T TIGR03105 88 V-NGKPYPQAPRVVLKRQLAEAAELGLTLNTGVECEFFLLRRDEDGSL-SIADRADTLAKPCYDQRGLMR--RYDVLTEI 163 (435)
T ss_pred e-CCCcCCCCHHHHHHHHHHHHHhcCCceeEEeceEEEEEecCCCCCc-ccCCCCCCCCccCCCCcchhh--hhHHHHHH
Confidence 6 8999999999999999999999999999999999999987532111 111111222334566665554 57899999
Q ss_pred HHHHHHcCCceeeecCCCCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCCCCceeeeeeccc
Q 014002 236 YKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTK 315 (432)
Q Consensus 236 ~~al~~~GI~ie~~h~E~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~~GsG~H~H~Sl~ 315 (432)
+++|+.+||+|+++|+|+|||||||++.|++++++||+++++|++||+||++||++|||||||+.+ ++|||+|+|+|||
T Consensus 164 ~~~l~~~gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~vk~vA~~~Gl~atFmpKP~~~-~~GsG~H~H~Sl~ 242 (435)
T TIGR03105 164 SDAMNALGWDPYQNDHEDANGQFEMNFTYADALTTADRHAFFRYMVKEIAEKHGMRATFMPKPFAD-LTGNGCHFHLSLW 242 (435)
T ss_pred HHHHHHCCCCeEEeecCcCCCceEEecCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEecCccCCC-CCccceEEEEeee
Confidence 999999999999999999999999999999999999999999999999999999999999999998 6999999999999
Q ss_pred cccC---------C--CchH-HHHHHHHHHHHhHHHHhhcccc---cccccCCCC------CCCCCCCceeeccCCCcce
Q 014002 316 SMRE---------E--GGYE-TIKKAILNLSLRHKEHISAYGE---GNERRLTGK------HETASIDSFSWGVANRGCS 374 (432)
Q Consensus 316 ~~~~---------~--~g~~-~~~~~iaGl~L~H~~al~a~~~---nsYkRL~~~------~~ap~~~~~sWG~~NR~a~ 374 (432)
+.++ + .+++ ..++||+|| |+|+++|+||++ ||||||+|+ +|||+ +++||++||+++
T Consensus 243 d~~g~n~f~d~~~~~~~~lS~~~~~fiaGl-L~h~~~l~a~~~PtvNSYkRl~p~~~~~~~~~AP~--~~~WG~~NR~a~ 319 (435)
T TIGR03105 243 DEDGRNLFADDSDPNGLGLSKLAYHFIGGI-LHHAPALCAVLAPTVNSYKRLNAPRTTSGATWAPN--FISYGGNNRTHM 319 (435)
T ss_pred cCCCcccccCCCCCccccccHHHHHHHHHH-HHHHHHHHHHHCCCCccccccCCCcCCcCcccCCc--eeeccCCCCcee
Confidence 6421 1 1243 347999999 999999999975 999999995 78888 999999999999
Q ss_pred eeecccCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCC
Q 014002 375 IRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWE 415 (432)
Q Consensus 375 IRvp~~~~~~~~~r~E~R~pda~aNPYLalAailaagl~G~ 415 (432)
|||| +.+|||+|+||++|||||++||+|+||++|+
T Consensus 320 iRv~------~~~riE~R~~da~aNPYL~lAailaAgl~Gi 354 (435)
T TIGR03105 320 VRIP------DPGRFELRLADGAANPYLAQAAILAAGLDGI 354 (435)
T ss_pred Eecc------CCCeeEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999 2469999999999999999999999999996
No 8
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=100.00 E-value=6.8e-68 Score=517.49 Aligned_cols=240 Identities=25% Similarity=0.451 Sum_probs=201.6
Q ss_pred CCCHHHHHHHHHHhhccCccccEEEeeeeEEEeccCCCCCCCCCC-CCCC----CCCCCcccccccChhhHHHHHHHHHH
Q 014002 163 PTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPV-GAYP----GPQGPYYCGAGADKSFGRDIADAHYK 237 (432)
Q Consensus 163 ~~~pR~~Lk~~l~~l~~~G~~~~~G~E~EF~L~~~~~~~~~g~p~-~~~p----~~~g~yy~~~~~~~~~~~~i~~~i~~ 237 (432)
+.|||++|+|+++++++.|+++++|+|+|||||+.+.. .++|. .+.+ ...++||.....+. ..++++++++
T Consensus 1 ~~~PR~~Lkr~~~~~~~~g~~~~~g~E~EF~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~ 76 (259)
T PF00120_consen 1 EACPRSILKRVLERLEEMGLSFKVGFELEFYLFDRDDD--GGWPRPSGYPDEPGQDYGGYYSLSPLDA--GEDFLEEIVD 76 (259)
T ss_dssp -T-HHHHHHHHHHHHHHTCCEEEEEEEEEEEEESTCEE--TTSSSTTSEESESSSTTTBSSTTTTTST--THHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCceEEEEeEEEEEeccCcc--cccccccccccccccccCCcCCCchhhH--HHHHHHHHHH
Confidence 47999999999999999999999999999999998632 23441 1222 23556777666554 5889999999
Q ss_pred HHHHcCCceeeecCCCCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCCCCceeeeeeccccc
Q 014002 238 ACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSM 317 (432)
Q Consensus 238 al~~~GI~ie~~h~E~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~~GsG~H~H~Sl~~~ 317 (432)
+|+++||+|+++|+|++||||||++.|++++++||+++++|++||+||++||++|||||||+.++ +|||+|+|+|||+.
T Consensus 77 ~l~~~Gi~ve~~h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~~~-~GsG~H~h~Sl~~~ 155 (259)
T PF00120_consen 77 ALEQAGIPVEQIHHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFSGD-NGSGMHLHISLWDA 155 (259)
T ss_dssp HHHHCT--EEEEEEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSSTTS-S--BEEEEEEECHH
T ss_pred HHHHhhccccccccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccCCc-Cccchhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999996 89999999999974
Q ss_pred -c------CCC---chHH-HHHHHHHHHHhHHHHhhcccc---cccccCCCCCCCCCCCceeeccCCCcceeeecccCCC
Q 014002 318 -R------EEG---GYET-IKKAILNLSLRHKEHISAYGE---GNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEK 383 (432)
Q Consensus 318 -~------~~~---g~~~-~~~~iaGl~L~H~~al~a~~~---nsYkRL~~~~~ap~~~~~sWG~~NR~a~IRvp~~~~~ 383 (432)
+ +++ +++. .++||+|| |+|+++|+||++ ||||||++++|+|. +++||.+||+++||||... .
T Consensus 156 ~~g~n~f~~~~~~~~ls~~~~~flaGl-l~h~~~l~a~~~pt~nsykRl~~~~~ap~--~~~wG~~NR~a~iRi~~~~-~ 231 (259)
T PF00120_consen 156 KDGKNLFYDPDGPAGLSELARHFLAGL-LKHAPALTAFTAPTVNSYKRLVPGSWAPT--YISWGYDNRSAAIRIPSGG-G 231 (259)
T ss_dssp HTTEETTBSTTSHGHHHHHHHHHHHHH-HCHHHHHHHCHSTSTTHHHHSSSTSSSSS--BEEEEESHTTSSEEE-HHH-H
T ss_pred cccccccccccccccccHHHHHHHHHH-HHHHHHHHhhhCccCcchhhCCCCcccee--ccchhhcccchhhheeccc-c
Confidence 1 122 3433 46899999 999999999964 99999999999998 9999999999999999871 1
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHHHHh
Q 014002 384 QGKGYLEDRRPASNMDPYVVTSLLAETT 411 (432)
Q Consensus 384 ~~~~r~E~R~pda~aNPYLalAailaag 411 (432)
++++|||+|+||++|||||++|++|+||
T Consensus 232 ~~~~~~E~R~~da~aNPYL~laailaAG 259 (259)
T PF00120_consen 232 PKGTRIENRLPDADANPYLALAAILAAG 259 (259)
T ss_dssp HGGSEEEEESSBTTSSHHHHHHHHHHHH
T ss_pred ccccEEeccCCCCCcCHHHHHHHHHhcC
Confidence 2468999999999999999999999997
No 9
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only]
Probab=99.75 E-value=1.5e-17 Score=168.65 Aligned_cols=225 Identities=26% Similarity=0.333 Sum_probs=154.5
Q ss_pred cccEEEeeeeEEEeccCCC--CCC----CCCCCCCCCCCC-----Cccccccc-ChhhHHHHHHHHHHHHHHcCCceeee
Q 014002 182 EVPWFGIEQEYTLLQQNVK--WPL----GWPVGAYPGPQG-----PYYCGAGA-DKSFGRDIADAHYKACLYAGINISGT 249 (432)
Q Consensus 182 ~~~~~G~E~EF~L~~~~~~--~~~----g~p~~~~p~~~g-----~yy~~~~~-~~~~~~~i~~~i~~al~~~GI~ie~~ 249 (432)
.-..+|.||||||.++..- +|. |.-.-|.|.+.| +||...+- -..|+.|+-+++| ..||++..-
T Consensus 214 V~s~~GaEQEYFlvd~~~~~~RpDLi~tGRTLFGa~ppkGQEldDHYFGaipeRV~~FM~Dve~~Ly----aLGIpaKTr 289 (724)
T COG3968 214 VFSNVGAEQEYFLVDKKSYDERPDLIFTGRTLFGAPPPKGQELDDHYFGAIPERVSAFMKDVEKELY----ALGIPAKTR 289 (724)
T ss_pred hccCCCccceeEEechhhcccCcceeeechhhcCCCCCCCccccchhccccHHHHHHHHHHHHHHHH----HcCCccccc
Confidence 4568999999999987521 111 111112233333 56655543 2467777777655 799999999
Q ss_pred cCCCCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCCCCceeeeeeccccccC-----CCch-
Q 014002 250 NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMRE-----EGGY- 323 (432)
Q Consensus 250 h~E~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~~GsG~H~H~Sl~~~~~-----~~g~- 323 (432)
|.|++||||||.--+.++--++|+-.+.-+++|.+|.+||+.+-++-|||.|. ||||-|+|+|+-...+ ++.+
T Consensus 290 HNEVAPgQfEIApife~~N~A~DhqQL~M~vLk~tA~KhGlVCLLHEKPFAGi-NGSGKH~NWSmGtd~g~NLLdPgD~P 368 (724)
T COG3968 290 HNEVAPGQFEIAPIFESGNLATDHQQLVMEVLKKTALKHGLVCLLHEKPFAGI-NGSGKHNNWSMGTDDGLNLLDPGDMP 368 (724)
T ss_pred ccccCCCceeeeeeeccccccchHHHHHHHHHHHHHHhcceEEEeecCCccCc-CCCCCccccccccCCCcccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999995 9999999999964321 1111
Q ss_pred ---HHH----HHHHHHHHHhHHHHhhccc--ccccccCCCCCCCCC-CCce-----------------------------
Q 014002 324 ---ETI----KKAILNLSLRHKEHISAYG--EGNERRLTGKHETAS-IDSF----------------------------- 364 (432)
Q Consensus 324 ---~~~----~~~iaGl~L~H~~al~a~~--~nsYkRL~~~~~ap~-~~~~----------------------------- 364 (432)
..| ..-|.++ -++.+-|.+-. +.|-.||..+ |+|. +..+
T Consensus 369 hdN~QFL~Fc~AvIkaV-dkY~~LlRa~~a~AsNDhRLGAN-EAPPAI~SVflGdqLedifEqi~~G~~~ssk~~g~mdL 446 (724)
T COG3968 369 HDNKQFLLFCTAVIKAV-DKYADLLRASAANASNDHRLGAN-EAPPAIISVFLGDQLEDIFEQIEKGKATSSKGNGKMDL 446 (724)
T ss_pred CccceeehhhHHHHHHH-HHHHHHHHHHHhccCCccccccC-CCCcceeEeeccchHHHHHHHHhcCCCcccccCccccc
Confidence 111 1234444 44444443332 2456777543 4443 2222
Q ss_pred ----------eeccCCCcceeeecccCCCCCccEEEecCCCCC---CCHHHHHHHHHHHhhcCC-CCchh
Q 014002 365 ----------SWGVANRGCSIRVGRETEKQGKGYLEDRRPASN---MDPYVVTSLLAETTILWE-PTLEA 420 (432)
Q Consensus 365 ----------sWG~~NR~a~IRvp~~~~~~~~~r~E~R~pda~---aNPYLalAailaagl~G~-~~~~~ 420 (432)
.-|..||+.++-.. ..+||+|.++++ +-|-.|+-++++--+..+ |-||+
T Consensus 447 g~~vlP~v~kdAgDRNRTSPFAFT-------GNkFEFRavgSSqSvs~P~tVLN~~vAesl~~i~drLe~ 509 (724)
T COG3968 447 GISVLPAVEKDAGDRNRTSPFAFT-------GNKFEFRAVGSSQSVSEPNTVLNVIVAESLSEIADRLEG 509 (724)
T ss_pred chhhccccccccccccCCCCceec-------cceeeEecCCcccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 23456666655543 358999999865 679999999998777653 44553
No 10
>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) has, currently, only been found in Bacteroides fragilis and in Butyrivibrio fibrisolvens. It is a hexamer of identical chains. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006542 glutamine biosynthetic process, 0006807 nitrogen compound metabolic process; PDB: 3NG0_A 2D3A_A 2D3C_E 2D3B_H 1LGR_C 2GLS_I 1F1H_B 1FPY_C 2LGS_D 1F52_A ....
Probab=99.53 E-value=2.5e-14 Score=117.16 Aligned_cols=68 Identities=34% Similarity=0.557 Sum_probs=58.5
Q ss_pred cccccceEEEEeccCCCC-CCC--CCccccCCCC-CCCCCCCccEEEEEEe--ccccCCCCCC--eEEEEEEEecC
Q 014002 90 GIDMRSKSKTISKPVEHP-SEL--PKWNYDGSST-GQAPGEDSEVILYPQA--IFKDPFRGGN--NILVICDTYTP 157 (432)
Q Consensus 90 g~Dlrgk~r~~~~p~~~~-~~~--~~~~fdgss~-g~~~~~~~D~~L~PD~--~~~~P~~~~~--~a~Vlcd~~~~ 157 (432)
|+|+.|+.|++.+|++.+ ++. .+++|||||+ ||+++++||++|+||+ ++++||++++ +++|+||+|+|
T Consensus 9 f~D~~G~~~~~~i~~~~~~~~~~~~g~~fDGSSi~g~~~~~~SDm~l~Pd~~t~~~~P~~~~~~~~~~v~cdv~~P 84 (84)
T PF03951_consen 9 FTDLFGRLKHVTIPASEFDEDALEDGIGFDGSSIRGFATIEESDMYLKPDPSTFFIDPWRPDPGKTARVICDVYDP 84 (84)
T ss_dssp EE-TTSSEEEEEEEGCCESCSGGGS-EEEECCGTTTSSBSCCEEEEEEEEGGEEEESTTTSTT-TEEEEEEEEEST
T ss_pred EEcCCCCcceEEEEHHHCCchHhhCCCCCCcccCcCcccCCCCCEEEecCcccEEECccCCCCceEEEEEEEeECc
Confidence 445788999999999988 554 3689999999 9999999999999995 9999999865 99999999975
No 11
>TIGR02050 gshA_cyan_rel uncharacterized enzyme. This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believe to make glutathione, and the function is unknown.
Probab=98.64 E-value=2.3e-06 Score=85.46 Aligned_cols=130 Identities=18% Similarity=0.142 Sum_probs=85.6
Q ss_pred EEEeeeeEEEeccCCCCCCCCCCCCCCCCCCCcccccccChhhHHHHHHHHHHHHHHcCCceeeecCCCCCCcEEEEecC
Q 014002 185 WFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGP 264 (432)
Q Consensus 185 ~~G~E~EF~L~~~~~~~~~g~p~~~~p~~~g~yy~~~~~~~~~~~~i~~~i~~al~~~GI~ie~~h~E~gpGQ~Ei~l~p 264 (432)
.+|+|.||+|.|.... .+.+. .. .+++++.- ...| ..+.+|...+|.||+..|
T Consensus 1 t~GvE~E~~lvD~~t~---------~~~~~---------~~---~~~l~~~~---~~~~---~~~~~El~~~qiEi~t~p 53 (287)
T TIGR02050 1 TLGVEEELLLVDPHTY---------DLAAS---------AS---AVLIGACR---EKIG---AGFKHELFESQVELATPV 53 (287)
T ss_pred CceeeeeeeeEcCCcc---------CcCcc---------Ch---HHHHHhhh---hhcc---cccChhhhccEEEecCCC
Confidence 3799999999997632 11111 01 24444321 1122 348899999999999999
Q ss_pred C-hHHHHhHHHHHHHHHHHHHHHHcCcEE---eecccccCCC----------------------CCCceeeeeecccccc
Q 014002 265 S-VGIDAGDHIWCSRYLLERITEQAGVVL---SLDPKPIEGD----------------------WNGAGCHTNYSTKSMR 318 (432)
Q Consensus 265 ~-~~l~aaD~l~~~R~~ik~VA~~~Gl~a---TFmPKP~~~~----------------------~~GsG~H~H~Sl~~~~ 318 (432)
+ +.-++.+.+...+..++++|+++|+.. ..+|.....+ ..-+|+|+|+++.+.
T Consensus 54 ~~~~~~l~~~l~~~~~~l~~~a~~~g~~l~~~G~hP~~~~~~~~~~~~~RY~~m~~~~g~~~~~~~~~g~hVhv~v~d~- 132 (287)
T TIGR02050 54 CTTLAEAAAQIRAVRARLVQAASDHGLRICGAGTHPFARWRRQEVADNPRYQRLLERYGYVARQQLVFGLHVHVGVPSP- 132 (287)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCCCCcHHHHHHHHHHHHHHHHhHceeeEEEEeCCCCH-
Confidence 8 577799999999999999999999764 3444421100 124789999999642
Q ss_pred CCCchHHHHHHHHHHHHhHHHHhhcccccc
Q 014002 319 EEGGYETIKKAILNLSLRHKEHISAYGEGN 348 (432)
Q Consensus 319 ~~~g~~~~~~~iaGl~L~H~~al~a~~~ns 348 (432)
..+-..+..+ ..++|.+.|+++||
T Consensus 133 -----~~~i~~~n~l-~~~lP~llALsANS 156 (287)
T TIGR02050 133 -----DDAVAVLNRL-LPWLPHLLALSASS 156 (287)
T ss_pred -----HHHHHHHHHH-HHHHHHHHHHHhCC
Confidence 1122233445 66788888887654
No 12
>PRK13517 carboxylate-amine ligase; Provisional
Probab=98.58 E-value=1.4e-06 Score=89.86 Aligned_cols=132 Identities=20% Similarity=0.165 Sum_probs=89.4
Q ss_pred ccEEEeeeeEEEeccCCCCCCCCCCCCCCCCCCCcccccccChhhHHHHHHHHHHHHHHcCCceeeecCCCCCCcEEEEe
Q 014002 183 VPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQV 262 (432)
Q Consensus 183 ~~~~G~E~EF~L~~~~~~~~~g~p~~~~p~~~g~yy~~~~~~~~~~~~i~~~i~~al~~~GI~ie~~h~E~gpGQ~Ei~l 262 (432)
.+.+|+|.||+++|..+. .+. ++ ..++++.+ ... -.-..+..|..-+|.||+.
T Consensus 10 ~~tiGvE~E~~lVD~~t~---------~~~---~~----------~~~vl~~~----~~~-~~~~~i~~El~~~qiEi~t 62 (373)
T PRK13517 10 RPTLGVEWELLLVDPETG---------ELS---PR----------AAEVLAAA----GED-DEGPHLQKELLRNTVEVVT 62 (373)
T ss_pred CCeeEeeeeEeeECCCcC---------CcC---cc----------HHHHHHhc----ccc-cCCCcccccccCCEEEECC
Confidence 569999999999997532 111 11 24444432 211 1124678899999999999
Q ss_pred cCC-hHHHHhHHHHHHHHHHHHHHHHcCcEE---eecccccCCC----------------------CCCceeeeeecccc
Q 014002 263 GPS-VGIDAGDHIWCSRYLLERITEQAGVVL---SLDPKPIEGD----------------------WNGAGCHTNYSTKS 316 (432)
Q Consensus 263 ~p~-~~l~aaD~l~~~R~~ik~VA~~~Gl~a---TFmPKP~~~~----------------------~~GsG~H~H~Sl~~ 316 (432)
.|+ +.-++.+.+.-.+..++++|+++|+.. ..+|.....+ ..-+|+|+|+++.+
T Consensus 63 ~p~~~~~el~~~L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~m~~~~~~~~~~~~~~g~hVhv~v~~ 142 (373)
T PRK13517 63 GVCDTVAEARADLRRTRALARRAAERRGARLAAAGTHPFSDWSEQPVTDKPRYAELIERTQWWARQQLICGVHVHVGVPS 142 (373)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeeCCCCCCCCccCCCCCchHHHHHHHHHHHHHHhheeeeeEEEeCCCC
Confidence 998 577799999999999999999999653 3455421110 02579999999964
Q ss_pred ccCCCchHHHHHHHHHHHHhHHHHhhcccccc
Q 014002 317 MREEGGYETIKKAILNLSLRHKEHISAYGEGN 348 (432)
Q Consensus 317 ~~~~~g~~~~~~~iaGl~L~H~~al~a~~~ns 348 (432)
. ...-..+..+ ..++|.+.|+++||
T Consensus 143 ~------~~~i~~~n~l-~~~lP~llALsAnS 167 (373)
T PRK13517 143 R------EKVVPVINRL-RPWLPHLLALSANS 167 (373)
T ss_pred H------HHHHHHHHHH-HHHHHHHHHHHhCC
Confidence 2 1122344555 77789999887654
No 13
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional
Probab=98.47 E-value=6.5e-06 Score=85.09 Aligned_cols=189 Identities=15% Similarity=0.079 Sum_probs=112.5
Q ss_pred ccEEEeeeeEEEeccCCCCCCCCCCCCCCCCCCCcccccccChhhHHHHHHHHHHHHHHcCCceeeecCCCCCCcEEEEe
Q 014002 183 VPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQV 262 (432)
Q Consensus 183 ~~~~G~E~EF~L~~~~~~~~~g~p~~~~p~~~g~yy~~~~~~~~~~~~i~~~i~~al~~~GI~ie~~h~E~gpGQ~Ei~l 262 (432)
.+.+|+|.||+|.|.++. .+.+. ..++++.+ ..... =+.+.+|..-+|.|++.
T Consensus 11 ~~t~GvE~E~~LVD~~t~---------~~~~~-------------~~~vl~~~----~~~~~-~~~v~~El~~~qIEi~T 63 (373)
T PRK13516 11 PFTLGVELELQLVNPHDY---------DLTQD-------------SSDLLRAV----KNQPT-AGEIKPEITESMIEIAT 63 (373)
T ss_pred CCeeEEEEEEEeEcCCCc---------CcCcc-------------HHHHHHhc----ccccc-ccccChhhhCceEEEcC
Confidence 459999999999997632 11110 24455432 11100 12578899999999999
Q ss_pred cCC-hHHHHhHHHHHHHHHHHHHHHHcCcEEe---eccc------ccCCC----------------CCCceeeeeecccc
Q 014002 263 GPS-VGIDAGDHIWCSRYLLERITEQAGVVLS---LDPK------PIEGD----------------WNGAGCHTNYSTKS 316 (432)
Q Consensus 263 ~p~-~~l~aaD~l~~~R~~ik~VA~~~Gl~aT---FmPK------P~~~~----------------~~GsG~H~H~Sl~~ 316 (432)
.|+ +.-++.+.+...|..++++|+++|+..- .+|- +.... ..-.|+|+|+.+-+
T Consensus 64 ~p~~~~~el~~eL~~~r~~l~~~A~~~G~~lva~GthP~~~~~~~~it~~~RY~~l~~~~~~~~~~~~i~G~HVHvg~~d 143 (373)
T PRK13516 64 GVCRDIDQALGQLSAMRDVLVQAADKLNIGICGGGTHPFQQWQRQRICDNPRFQYLSELYGYLAKQFTVFGQHVHIGCPS 143 (373)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeecCCCCCCccccCCCCcHHHHHHHHHhhhhhhhheeeeeEEEeCCCC
Confidence 998 6677999999999999999999998642 3332 11110 02458999999854
Q ss_pred ccCCCchHHHHHHHHHHHHhHHHHhhccccc------------ccccC----CCCCCCCCCCceeecc------------
Q 014002 317 MREEGGYETIKKAILNLSLRHKEHISAYGEG------------NERRL----TGKHETASIDSFSWGV------------ 368 (432)
Q Consensus 317 ~~~~~g~~~~~~~iaGl~L~H~~al~a~~~n------------sYkRL----~~~~~ap~~~~~sWG~------------ 368 (432)
. -..+ ..+..+ ..++|++.|+++| |||-. .|.. -+.+...+|..
T Consensus 144 ~-----~~av-~~~~~l-~~~lP~llALsAsSPf~~G~dTG~~S~R~~~~~~~P~~-G~pp~~~~~~~y~~~~~~l~~~G 215 (373)
T PRK13516 144 G-----DDAL-YLLHGL-SRYVPHFIALSASSPYVQGVDTGFASARLNSVSAFPLS-GRAPFVLNWQEFEAYFRKMSYTG 215 (373)
T ss_pred H-----HHHH-HHHHHH-HhHhHHHHHHHhCCccccCcCCcchhHHHHHHhcCCCC-CCCCCcCCHHHHHHHHHHHHHcC
Confidence 2 1111 233344 6667888888654 33322 1221 11122344440
Q ss_pred -CCCcc----eeeecccCCCCCccEEEecCCCCCCCHHHH--HHHHHHHh
Q 014002 369 -ANRGC----SIRVGRETEKQGKGYLEDRRPASNMDPYVV--TSLLAETT 411 (432)
Q Consensus 369 -~NR~a----~IRvp~~~~~~~~~r~E~R~pda~aNPYLa--lAailaag 411 (432)
-.-.. -|| |+ +.-+.+|+|++|...++--+ +|+++.+-
T Consensus 216 ~i~d~~~~~WdvR-p~----~~~~TvEiRv~D~~~~~~~~~~iaal~~al 260 (373)
T PRK13516 216 VIDSMKDFYWDIR-PK----PEFGTVEVRVMDTPLTLERAAAIAAYIQAL 260 (373)
T ss_pred CcCCCCeeEEEec-cC----CCCCCeEEecCCCCCCHHHHHHHHHHHHHH
Confidence 00001 244 22 24568999999999999866 44544443
No 14
>PRK13515 carboxylate-amine ligase; Provisional
Probab=98.39 E-value=9.9e-06 Score=83.61 Aligned_cols=131 Identities=16% Similarity=0.096 Sum_probs=86.8
Q ss_pred ccEEEeeeeEEEeccCCCCCCCCCCCCCCCCCCCcccccccChhhHHHHHHHHHHHHHHcCCceeeecCCCCCCcEEEEe
Q 014002 183 VPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQV 262 (432)
Q Consensus 183 ~~~~G~E~EF~L~~~~~~~~~g~p~~~~p~~~g~yy~~~~~~~~~~~~i~~~i~~al~~~GI~ie~~h~E~gpGQ~Ei~l 262 (432)
...+|+|.||++.|..+. .+.+. ..++++. +... .-..+.+|..-+|.||+.
T Consensus 5 ~~t~GvE~E~~lVD~~t~---------~l~~~-------------~~~~l~~----~~~~--~~~~i~~El~~~qiEi~T 56 (371)
T PRK13515 5 EFTLGIEEEYLLVDPETR---------DLRSY-------------PDALVEA----CRDT--LGEQVKPEMHQSQVEVGT 56 (371)
T ss_pred CCcceEeEeEEEecCCcc---------ccccc-------------HHHHHHh----chhh--cCCccCcchhccEEEECC
Confidence 468999999999997531 11100 1334332 1111 122688899999999999
Q ss_pred cCC-hHHHHhHHHHHHHHHHHHHHHHcCcEEe---ecccccC------------------C----CCCCceeeeeecccc
Q 014002 263 GPS-VGIDAGDHIWCSRYLLERITEQAGVVLS---LDPKPIE------------------G----DWNGAGCHTNYSTKS 316 (432)
Q Consensus 263 ~p~-~~l~aaD~l~~~R~~ik~VA~~~Gl~aT---FmPKP~~------------------~----~~~GsG~H~H~Sl~~ 316 (432)
.|+ +.-++.+.+...+..+.++|+++|+... .+|.... + ...-+|+|+|+++.+
T Consensus 57 ~p~~~~~el~~~L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~t~~~RY~~m~~~~~~~~~~~~~~g~HVhv~~~d 136 (371)
T PRK13515 57 PVCATIAEAREELGRLRQRVAQLAAQFGLRIIAAGTHPFADWRRQEITPKERYAQLVEDLQDVARRNLICGLHVHVGIPD 136 (371)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCCCCCchHHHHHHHHHHHHHHhhceeeeEEEeCCCC
Confidence 998 5666889999999999999999999763 4443110 0 012349999999964
Q ss_pred ccCCCchHHHHHHHHHHHHhHHHHhhcccccc
Q 014002 317 MREEGGYETIKKAILNLSLRHKEHISAYGEGN 348 (432)
Q Consensus 317 ~~~~~g~~~~~~~iaGl~L~H~~al~a~~~ns 348 (432)
. ..+-.++..+ ...+|.|.|+++||
T Consensus 137 ~------e~~~~~~n~~-~~~lP~llALsanS 161 (371)
T PRK13515 137 R------EDRIDLMNQV-RYFLPHLLALSTSS 161 (371)
T ss_pred H------HHHHHHHHHH-HHHHHHHHHHHcCC
Confidence 2 1222344455 66788888887665
No 15
>PLN02611 glutamate--cysteine ligase
Probab=97.93 E-value=0.00015 Score=77.05 Aligned_cols=152 Identities=15% Similarity=0.121 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhhccCccccEEEeeeeEEEeccCCCCCCCCCCCCCCCCCCCcccccccChhhHHHHHHHHHHHHHHcCCc
Q 014002 166 KRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGIN 245 (432)
Q Consensus 166 pR~~Lk~~l~~l~~~G~~~~~G~E~EF~L~~~~~~~~~g~p~~~~p~~~g~yy~~~~~~~~~~~~i~~~i~~al~~~GI~ 245 (432)
.+.-|-..++.--.-+-...+|+|+|.+.|+.++..|. +|+ -..++++.+.. ..|++
T Consensus 50 ~~~~lv~~~~~gck~~~~~~iG~E~E~f~~~~~~~~pv------------~y~--------~i~~lL~~l~~---~~gw~ 106 (482)
T PLN02611 50 TKEDLVAYLASGCKPKEKWRIGTEHEKFGFELATLRPM------------KYD--------QIAQLLEGLAE---RFGWE 106 (482)
T ss_pred CHHHHHHHHHhcCCCCCCCeeEEeeeeeeccCCCCCCC------------CHH--------HHHHHHHHHHH---hcCCc
Confidence 34444444544222345679999999999986532111 221 13445544321 12211
Q ss_pred -------e-------eeecCCCCCCcEEEEecCC-hHHHHhHHHHHHHHHHHHHHHHcCcEEe---ecccccCCC-----
Q 014002 246 -------I-------SGTNGEVMPGQWEYQVGPS-VGIDAGDHIWCSRYLLERITEQAGVVLS---LDPKPIEGD----- 302 (432)
Q Consensus 246 -------i-------e~~h~E~gpGQ~Ei~l~p~-~~l~aaD~l~~~R~~ik~VA~~~Gl~aT---FmPKP~~~~----- 302 (432)
| ..+.=|-| ||+|++..|+ +.-++++.+...+..++.+|+++|+... ++|+....+
T Consensus 107 ~~~e~g~iIgl~~~g~~ITlEPG-gQiElSt~p~~si~e~~~el~~~~~~l~~~a~~~Gl~l~g~G~hP~~~~~~~~i~p 185 (482)
T PLN02611 107 KIMEGDNIIGLKQDGQSVSLEPG-GQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWSVADIPIMP 185 (482)
T ss_pred eeccCCceecccCCCCceEeccc-ceEEecccCcCCHHHHHHHHHHHHHHHHHHHHHcCCCeEccCCCCCCccccccCCC
Confidence 0 23444777 9999999998 5778999999999999999999998532 355432110
Q ss_pred --------------------C--CCceeeeeeccccccCCCchHHHHHHHHHHHHhHHHHhhcccccc
Q 014002 303 --------------------W--NGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGN 348 (432)
Q Consensus 303 --------------------~--~GsG~H~H~Sl~~~~~~~g~~~~~~~iaGl~L~H~~al~a~~~ns 348 (432)
. .-+|+|+|+.+-+. + ..++ -+.-+ +.+.|.++|+++||
T Consensus 186 k~RY~~M~~y~~~~g~~g~~MM~~t~g~QVhvd~~se---e--d~v~-~~~~~-~~l~Pvl~ALfANS 246 (482)
T PLN02611 186 KGRYKIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSE---Q--DMVR-KFRVG-LALQPIATALFANS 246 (482)
T ss_pred ChHHHHHHHHHHHhhhhhhhhccceEEEEEEecCCCH---H--HHHH-HHHHH-HHHHHHHHHHHhCC
Confidence 0 25689999988542 1 1111 22233 67788888887654
No 16
>PRK13518 carboxylate-amine ligase; Provisional
Probab=97.72 E-value=0.00017 Score=74.19 Aligned_cols=95 Identities=18% Similarity=0.075 Sum_probs=67.5
Q ss_pred eeecCCCCCCcEEEEecCC-hHHHHhHHHHHHHHHHHHHHHHcCcEE---eec-----------ccccC-------CC--
Q 014002 247 SGTNGEVMPGQWEYQVGPS-VGIDAGDHIWCSRYLLERITEQAGVVL---SLD-----------PKPIE-------GD-- 302 (432)
Q Consensus 247 e~~h~E~gpGQ~Ei~l~p~-~~l~aaD~l~~~R~~ik~VA~~~Gl~a---TFm-----------PKP~~-------~~-- 302 (432)
..+++|...+|.||+..+| +.-++.+++...|..+.++|+++|+.. -++ |||.. +.
T Consensus 49 ~~~~~El~~~qvEi~T~~~~~~~el~~~L~~~r~~l~~aa~~~g~~l~a~GthP~~~~~~~~~t~~~RY~~m~~~~~~~~ 128 (357)
T PRK13518 49 GRLDHELFKFVIETQTPLIEDPSEAGAALREVRDALVDHAAAHGYRIAAAGLHPAAKWRELEHAEKPRYRSQLDRIQYPQ 128 (357)
T ss_pred CcccccccCceEEEcCcCcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEecCCCCCCCccccCCCCCcHHHHHHHhcccch
Confidence 4688999999999999998 777899999999999999999999863 233 34311 10
Q ss_pred --CCCceeeeeeccccccCCCchHHHHHHHHHHHHhHHHHhhcccccc
Q 014002 303 --WNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGN 348 (432)
Q Consensus 303 --~~GsG~H~H~Sl~~~~~~~g~~~~~~~iaGl~L~H~~al~a~~~ns 348 (432)
..-+|+|+|+.+-+. -..+ ..+..+ ...+|+|.|+++||
T Consensus 129 ~~~~~~G~HVHVg~~d~-----d~av-~v~n~l-r~~LP~LlALsAnS 169 (357)
T PRK13518 129 HRNTTAGLHVHVGVDDA-----DKAV-WIANEL-RWHLPILLALSANS 169 (357)
T ss_pred hcceeeEEEEEeCCCCH-----HHHH-HHHHHH-HhHHHHHHHHHcCC
Confidence 013589999988542 1101 123444 56679999887643
No 17
>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type. This model represents one of two highly dissimilar forms of glutamate--cysteine ligase (gamma-glutamylcysteine synthetase), an enzyme of glutathione biosynthesis. The other type is modeled by TIGR01434. This type is found in plants (with a probable transit peptide), root nodule and other bacteria, but not E. coli and closely related species.
Probab=97.55 E-value=0.0019 Score=68.29 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=90.8
Q ss_pred HHHHHHHHHhhccCccccEEEeeeeEEEeccCCCCCCCCCCCCCCCCCCCcccccccChhhHHHHHHHHHHHHHHcCCc-
Q 014002 167 RHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGIN- 245 (432)
Q Consensus 167 R~~Lk~~l~~l~~~G~~~~~G~E~EF~L~~~~~~~~~g~p~~~~p~~~g~yy~~~~~~~~~~~~i~~~i~~al~~~GI~- 245 (432)
+.-|-..+++-..-+-...+|+|+|-+.|+.++..|. +|+...+ ..++++.+. ...|++
T Consensus 5 ~~~l~~~~~~g~k~~~~~~iG~E~E~f~~~~~~~~~~------------~y~~~~g-----i~~~l~~l~---~~~g~~~ 64 (446)
T TIGR01436 5 RDDLIAYLAAGCKPKEQWRIGTEHEKFGFEKNTLRPM------------KYEQKGG-----IAELLNGIA---ERFGWQK 64 (446)
T ss_pred HHHHHHHHHhCCCcCCCCceEeeeeeeeeecCCCCCC------------CCCCchh-----HHHHHHHHH---hhcCCce
Confidence 4444444444322344678999999999987643222 2211111 344555432 122211
Q ss_pred ------e-------eeecCCCCCCcEEEEecCC-hHHHHhHHHHHHHHHHHHHHHHcCcEEe---ecccccCCC------
Q 014002 246 ------I-------SGTNGEVMPGQWEYQVGPS-VGIDAGDHIWCSRYLLERITEQAGVVLS---LDPKPIEGD------ 302 (432)
Q Consensus 246 ------i-------e~~h~E~gpGQ~Ei~l~p~-~~l~aaD~l~~~R~~ik~VA~~~Gl~aT---FmPKP~~~~------ 302 (432)
| ..+.=|-| ||+|++..|+ +.-++++.+...+..++.+|+++|+... ++|+....+
T Consensus 65 ~~e~g~~i~l~~~~~~itlEPg-gQlElS~~p~~~i~e~~~~l~~~~~~l~~~a~~~Gl~l~~~G~~P~~~~~~~~~~pk 143 (446)
T TIGR01436 65 VMEGDKIIGLKQDKQSISLEPG-GQFELSGAPLETIHETCDEINSHLYQVKEVAEEMGIGFLGLGFQPKWRREDIPLMPK 143 (446)
T ss_pred eccCCceeeecCCCCeEEEcCc-CeEEecccccCCHHHHHHHHHHHHHHHHHHHHhcCCCeEecCCCCCCCcccCCCCCc
Confidence 1 34444766 9999999998 5777999999999999999999998532 355432110
Q ss_pred -----------C--------C--CceeeeeeccccccCCCchHHHHHHHHHHHHhHHHHhhcccccc
Q 014002 303 -----------W--------N--GAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGN 348 (432)
Q Consensus 303 -----------~--------~--GsG~H~H~Sl~~~~~~~g~~~~~~~iaGl~L~H~~al~a~~~ns 348 (432)
+ - -+|+|+|+..-+. ...+ .-+.-+ +...|.++|+++||
T Consensus 144 ~RY~~M~~~~~~~G~~g~~mm~~t~g~qVhld~~~e-----~d~v-~~~~~~-~~l~Pvl~ALfANS 203 (446)
T TIGR01436 144 GRYDIMRNYMPKVGKLGLDMMLRTCTVQVNLDFSSE-----ADMV-RKFRAS-LALQPLATALFANS 203 (446)
T ss_pred hHHHHHHHHHhhcchHHHHHhHhheeEEEeeCCCCH-----HHHH-HHHHHH-HHHHHHHHHHHhCC
Confidence 0 0 3578888876432 1111 112222 56678888887654
No 18
>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative. This family consists of proteins believed (see Copley SD, Dhillon JK, 2002) to be the glutamate--cysteine ligases of several cyanobacteria, which are known to make glutathione.
Probab=97.51 E-value=0.00084 Score=69.62 Aligned_cols=92 Identities=17% Similarity=0.057 Sum_probs=63.8
Q ss_pred eecCCCCCCcEEEEecCC-hHHHHhHHHHHHHHHHHHHHHHcCc-E-Ee-----eccc-cc---CC--------------
Q 014002 248 GTNGEVMPGQWEYQVGPS-VGIDAGDHIWCSRYLLERITEQAGV-V-LS-----LDPK-PI---EG-------------- 301 (432)
Q Consensus 248 ~~h~E~gpGQ~Ei~l~p~-~~l~aaD~l~~~R~~ik~VA~~~Gl-~-aT-----FmPK-P~---~~-------------- 301 (432)
++.+|.-..|.|++.+|+ +.-++.+++...|..+..+|+++|. . +. |+.- ++ .+
T Consensus 31 ~~~~El~~~~IE~~T~~~~~~~el~~~L~~~r~~l~~~a~~~g~~~l~a~gthP~~~~~~~~~~t~~~rY~~~~~~~~~~ 110 (376)
T TIGR02048 31 GFVREPDSRNVEYTTPPLNSYDRLLCGLLRPRRQLRHYLSQLGDYTLIPGSTLSLGGTDRFYRSDPQNPYHTYIEQTYGT 110 (376)
T ss_pred CCccchhhcEEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeecccCCCCCCCccCcCCCcchHHHHHHHHhhh
Confidence 456688899999999998 6778999999999999999999997 3 21 1111 11 00
Q ss_pred CCCCceeeeeeccccccCCCchHHHHHHHHHHHHhHHHHhhcccc
Q 014002 302 DWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGE 346 (432)
Q Consensus 302 ~~~GsG~H~H~Sl~~~~~~~g~~~~~~~iaGl~L~H~~al~a~~~ 346 (432)
..+=+|||+|+.+-|. ...-..+..+ ..++|+|.|+.+
T Consensus 111 ~~~i~G~HVHVgv~d~------d~av~v~n~l-r~~LP~LlALSA 148 (376)
T TIGR02048 111 QVVTASVHINIGIPDP------EELMRACRLV-RMEAPLFLALSA 148 (376)
T ss_pred hheeeEEEEEcCCCCH------HHHHHHHHHH-HHHHHHHHHHhc
Confidence 0123589999999653 1122344556 777788887764
No 19
>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6.3.2.2 from EC). This enzyme catalyses the first and rate limiting step in de novo glutathione biosynthesis. Members of this family are found in archaea, bacteria and plants. May and Leaver [] discuss the possible evolutionary origins of glutamate-cysteine ligase enzymes in different organisms and suggest that it evolved independently in different eukaryotes, from an ancestral bacterial enzyme. They also state that Arabidopsis thaliana (Mouse-ear cress) gamma-glutamylcysteine synthetase is structurally unrelated to mammalian, yeast and Escherichia coli homologues. In plants, there are separate cytosolic and chloroplast forms of the enzyme.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 1R8G_A 2GWC_E 2GWD_A 1TT4_B.
Probab=97.50 E-value=0.00066 Score=67.65 Aligned_cols=96 Identities=16% Similarity=0.123 Sum_probs=64.8
Q ss_pred eeeecCCCCCCcEEEEecCC-hHHHHhHHHHHHHHHHHHHHHHcCcEEe---ecc--cccC----------------C--
Q 014002 246 ISGTNGEVMPGQWEYQVGPS-VGIDAGDHIWCSRYLLERITEQAGVVLS---LDP--KPIE----------------G-- 301 (432)
Q Consensus 246 ie~~h~E~gpGQ~Ei~l~p~-~~l~aaD~l~~~R~~ik~VA~~~Gl~aT---FmP--KP~~----------------~-- 301 (432)
-..+++|..-+|.||+..|+ +.-++.+.+...+..+..+|+++|+... ++| +|.. +
T Consensus 34 ~~~~~~E~~~~qvEi~t~p~~~~~el~~~l~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~~~~~~~~~ 113 (288)
T PF04107_consen 34 GGRVVTELPQSQVEISTPPCRSLAELREELRALRRALADAAAELGLRLVAAGTHPFARWRDQPITPKPRYRAMAEYFGRR 113 (288)
T ss_dssp SSEEEEESSTTEEEEE--SBSSHHHHHHHHHHHHHHHHHHHHCTTEEEE--SB-SS--GGGS---S-HHHHCHHHHHGGH
T ss_pred CCceeeccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEecCCCcCCCcccccCCCChhhhHHHHHHhhh
Confidence 34788899999999999998 5667999999999999999999998743 445 2211 1
Q ss_pred -----CCCCceeeeeeccccccCCCchHHHHHHHHHHHHhHHHHhhccccc
Q 014002 302 -----DWNGAGCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEG 347 (432)
Q Consensus 302 -----~~~GsG~H~H~Sl~~~~~~~g~~~~~~~iaGl~L~H~~al~a~~~n 347 (432)
+.--+|+|+|+++-+. -...-..+..+ ...+|.+.|+++|
T Consensus 114 g~~~~~~~~~g~hvhV~v~~~-----~e~~v~~~n~~-~~~~P~llALsAN 158 (288)
T PF04107_consen 114 GVLARRMMTCGAHVHVGVDDG-----DEAAVRVMNAL-RPWLPVLLALSAN 158 (288)
T ss_dssp -SGCCSHHBHEEEEEEEESSS-----HHHHHHHHHHH-HTTHHHHHHHH--
T ss_pred hhhhhhhhhcccceEEeCCCc-----cHHHHHHHHHH-HHHhHHHHHHHcC
Confidence 0123389999999652 11112344455 7778888888754
No 20
>COG2170 Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.002 Score=65.29 Aligned_cols=188 Identities=20% Similarity=0.246 Sum_probs=112.0
Q ss_pred ccEEEeeeeEEEeccCCCCCCCCCCCCCCCCCCCcccccccChhhHHHHHHHHHHHHHHcCCceeeec--CCCCCCcEEE
Q 014002 183 VPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTN--GEVMPGQWEY 260 (432)
Q Consensus 183 ~~~~G~E~EF~L~~~~~~~~~g~p~~~~p~~~g~yy~~~~~~~~~~~~i~~~i~~al~~~GI~ie~~h--~E~gpGQ~Ei 260 (432)
.+.+|+|.||++.++.. |..++.. ..|++++ .=++..-| +|.--.+-|+
T Consensus 2 ~ltlGvE~E~~lvd~~g------------------~dl~~~s----~~ii~~~-------~~~~~~~~~~~e~~e~~vE~ 52 (369)
T COG2170 2 RLTLGVELEFQLVDPQG------------------YDLVGSS----DAIIEAL-------KGKVTAGHLKHEITESTVEL 52 (369)
T ss_pred CcccceEEEEEecCCCC------------------ccccccc----HHHHHhc-------CCCCCCcchhHHHHHHhhcc
Confidence 36789999999998652 1222221 3444432 22222223 6666678888
Q ss_pred EecCChHH-HHhHHHHHHHHHHHHHHHHcCcEEe-ecccccCCCC-------C------------------Cceeeeeec
Q 014002 261 QVGPSVGI-DAGDHIWCSRYLLERITEQAGVVLS-LDPKPIEGDW-------N------------------GAGCHTNYS 313 (432)
Q Consensus 261 ~l~p~~~l-~aaD~l~~~R~~ik~VA~~~Gl~aT-FmPKP~~~~~-------~------------------GsG~H~H~S 313 (432)
..+.|..+ +|+-.+--.|..+++.|..||+..- =-.-||.+ | + =.|.|+|+.
T Consensus 53 ~t~vc~~~~eA~~~~r~~r~~l~q~a~d~gL~~~~~GtHPfad-w~~~~~~~~prY~~~ie~~~y~~~q~~v~G~HVHVG 131 (369)
T COG2170 53 ATGVCRLLAEAAAQLRALRDYLVQAASDHGLRICGGGTHPFAD-WRRQEVPDNPRYQRLIERTGYLGRQMTVAGQHVHVG 131 (369)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHhhhcCceecccCCCchhh-hhhccCCCChhHHHHHHHhhhHHhheeeeeEEEEec
Confidence 88888655 4666777889999999999999852 12223322 1 1 138999999
Q ss_pred cccccCCCchHHHHHHHHHHHHhHHHHhhccccc------------ccccCC----CCCCCCCCCceeec----------
Q 014002 314 TKSMREEGGYETIKKAILNLSLRHKEHISAYGEG------------NERRLT----GKHETASIDSFSWG---------- 367 (432)
Q Consensus 314 l~~~~~~~g~~~~~~~iaGl~L~H~~al~a~~~n------------sYkRL~----~~~~ap~~~~~sWG---------- 367 (432)
+-+. -.+ -..+-++ +.++|++.|+.++ |+|+-. |.. -+.+..-+|+
T Consensus 132 i~~~-----d~~-~~~l~~l-~~~~PhlLALSASSPf~~G~dTGyAS~R~~if~~~P~~-g~pp~f~sw~~f~~~~~~~~ 203 (369)
T COG2170 132 IPSP-----DDA-MYLLHRL-LRYVPHLLALSASSPFWQGTDTGYASARANIFSQLPTN-GLPPAFQSWAAFEAFFRDQL 203 (369)
T ss_pred CCCH-----HHH-HHHHHHH-HhhhhHHHhhhcCCccccCccchhhhhhHhhhhhCCcC-CCCccccCHHHHHHHHHHHH
Confidence 9653 111 1355677 9999999999652 444432 110 0111233454
Q ss_pred ----cCCCcc---eeeecccCCCCCccEEEecCCCCCCCHHHH--HHHHHHHhhc
Q 014002 368 ----VANRGC---SIRVGRETEKQGKGYLEDRRPASNMDPYVV--TSLLAETTIL 413 (432)
Q Consensus 368 ----~~NR~a---~IRvp~~~~~~~~~r~E~R~pda~aNPYLa--lAailaagl~ 413 (432)
.+|..- .|| | ++.=+++|.|++|.-.||=-+ +++++.|-+.
T Consensus 204 ~tG~I~~~~~lwwdIR-P----sph~gTlEvRi~D~~~~l~~~~aivaL~~Alv~ 253 (369)
T COG2170 204 ETGTIDSMGDLWWDIR-P----SPHLGTLEVRICDTVLNLAELLAIVALIHALVV 253 (369)
T ss_pred HhcccccccceEEecc-c----CCCCCceEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 233321 233 1 123479999999999999755 5667766553
No 21
>TIGR03444 gshA_related glutamate--cysteine ligase family protein. Members of this bacterial protein family bear homology to glutamate--cysteine ligase, an enzyme in the two-step pathway of glutathione (GSH) biosynthesis, but are distinctly different. Among the bacterial genomes that carry the uncharacterized methyltransferase (TIGR03438) and conserved hypothetical protein TIGR03440, this protein is found in a subset, always in the vicinity of these other genes. Conserved hypothetical protein TIGR03442 is found in these same genomes. The role of this cassette is probably biosynthetic, but the product is unknown.
Probab=93.52 E-value=0.23 Score=51.78 Aligned_cols=89 Identities=15% Similarity=0.054 Sum_probs=58.3
Q ss_pred CcEEEEecCC-hHHHHhHHHHHHHHHHHHHHHHcCcEE---eeccc---------c--------cC---CC----CCCce
Q 014002 256 GQWEYQVGPS-VGIDAGDHIWCSRYLLERITEQAGVVL---SLDPK---------P--------IE---GD----WNGAG 307 (432)
Q Consensus 256 GQ~Ei~l~p~-~~l~aaD~l~~~R~~ik~VA~~~Gl~a---TFmPK---------P--------~~---~~----~~GsG 307 (432)
||+|++..|+ +.-++++.+...+..++++|+++|+.. -++|+ | +. |. .-.+|
T Consensus 70 gQvELSt~P~~sl~el~~el~~~l~~l~~~a~~~Gl~lva~G~~P~~~~~~itpk~RY~~M~~~~~~~~G~~G~~MM~~t 149 (390)
T TIGR03444 70 GQLELSGPPADGLTAAVAALAADLAVLRAALAEDGLALVGLGADPLRPPRRVLPGPRYRAMEQFFATGIGPFGALMMCST 149 (390)
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEeccCCCCCccCCCchHHHHHHHHHhhhccCchHHHHhhCc
Confidence 6999999998 677799999999999999999999863 34555 2 11 10 12457
Q ss_pred eeeeeccccccCCCchHHHHHHHHHHHHhHHHHhhcccccc
Q 014002 308 CHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGEGN 348 (432)
Q Consensus 308 ~H~H~Sl~~~~~~~g~~~~~~~iaGl~L~H~~al~a~~~ns 348 (432)
+|+|+++-...+ -..+...+.=. ..-.|.+.|+++||
T Consensus 150 asVQV~ld~~~~---e~D~~~k~rva-~aL~PvLlALfANS 186 (390)
T TIGR03444 150 ASVQVNLDAGTD---PAEWAERWRLA-HALGPVLIAAFANS 186 (390)
T ss_pred eeEEEccCCCCC---HHHHHHHHHHH-HHHHHHHHHHHhCC
Confidence 999999954210 11222222111 22267888887654
No 22
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=80.36 E-value=0.53 Score=48.28 Aligned_cols=58 Identities=10% Similarity=-0.124 Sum_probs=47.0
Q ss_pred cccccCCCCCCCCCCCceeeccCCCcceeeecccCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 014002 347 GNERRLTGKHETASIDSFSWGVANRGCSIRVGRETEKQGKGYLEDRRPASNMDPYVVTSLLAETTILW 414 (432)
Q Consensus 347 nsYkRL~~~~~ap~~~~~sWG~~NR~a~IRvp~~~~~~~~~r~E~R~pda~aNPYLalAailaagl~G 414 (432)
++++|.....+. -.||.+|+....+ +.. .....++-...+++|||+.++..++++.+|
T Consensus 285 s~rh~~hi~~yd-----p~~G~dN~rrltg-~hE----t~~i~~Fs~GvAnr~~siri~r~va~~~~G 342 (380)
T KOG0683|consen 285 SKRHREHIAAYD-----PKGGKDNERRLTG-RHE----TGSIDNFSWGVANRNPSIRIPRTVAAEGKG 342 (380)
T ss_pred chhhhhhhhhcC-----ccCCccchhhhcC-CCc----cccccccccccccCCceeeechhhhccccc
Confidence 688888765443 5699999998888 222 345777888888899999999999999999
No 23
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=80.23 E-value=4 Score=32.05 Aligned_cols=65 Identities=22% Similarity=0.216 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCCceeeecCCCCC------CcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecc
Q 014002 230 DIADAHYKACLYAGINISGTNGEVMP------GQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDP 296 (432)
Q Consensus 230 ~i~~~i~~al~~~GI~ie~~h~E~gp------GQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmP 296 (432)
-++.++.+.|.+.|++|..+..+..+ ++|.+.+.-.-+ ...| .-.++.-++++|++.|+.++|.|
T Consensus 11 Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~~~-~~~l~~~l~~l~~~~~~~~~~~~ 81 (81)
T cd04869 11 GIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AGTD-LDALREELEELCDDLNVDISLEP 81 (81)
T ss_pred CHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CCCC-HHHHHHHHHHHHHHhcceEEecC
Confidence 34555666788999999999876655 777554443322 1112 44678889999999999988864
No 24
>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]
Probab=77.65 E-value=6 Score=41.32 Aligned_cols=45 Identities=20% Similarity=0.146 Sum_probs=35.0
Q ss_pred ecCCCCCCcEEEEecCChHHH-HhHHHHHHHHHHHHHHHHcCcEEee
Q 014002 249 TNGEVMPGQWEYQVGPSVGID-AGDHIWCSRYLLERITEQAGVVLSL 294 (432)
Q Consensus 249 ~h~E~gpGQ~Ei~l~p~~~l~-aaD~l~~~R~~ik~VA~~~Gl~aTF 294 (432)
+.-|.| ||+|+...|.+.|. .+-..-.--..||++|+..|+...+
T Consensus 91 IslEpg-gq~Elsgapletihq~~~e~n~hlavlr~~a~~~gl~fvG 136 (456)
T COG3572 91 ISLEPG-GQFELSGAPLETIHQTCGEMNQHLAVLREIAAELGLGFVG 136 (456)
T ss_pred EEeccC-ceEEecCCchHHHHHHHHHHHHHHHHHHHHHHhcCCceEe
Confidence 344777 99999999997665 5555556667899999999987654
No 25
>PF12224 Amidoligase_2: Putative amidoligase enzyme; InterPro: IPR022025 This family of proteins are likely to act as amidoligase enzymes [] Protein in this family are found in conserved gene neighbourhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes) [].
Probab=74.87 E-value=35 Score=32.76 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=18.3
Q ss_pred ccEEEecCCCCCCCHHHHHHHH
Q 014002 386 KGYLEDRRPASNMDPYVVTSLL 407 (432)
Q Consensus 386 ~~r~E~R~pda~aNPYLalAai 407 (432)
.+-||+|.|.++.|+--+.+.+
T Consensus 224 ~~TvEFR~~~~s~d~~~~~~wi 245 (252)
T PF12224_consen 224 RPTVEFRQPNGSLDAEEISAWI 245 (252)
T ss_pred CCeEEEecCCCCCCHHHHHHHH
Confidence 4589999999999998876554
No 26
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=74.76 E-value=7.1 Score=30.80 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHcCCceeeecCCCCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEee
Q 014002 230 DIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSL 294 (432)
Q Consensus 230 ~i~~~i~~al~~~GI~ie~~h~E~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTF 294 (432)
-++.++.++|.+.|.+|+..+.-...|+|-+.+--.-+ .|+.-..+..+.+++++.|+.+.|
T Consensus 14 Giv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~---~~~~~~l~~~L~~l~~~~~l~v~v 75 (76)
T PF13740_consen 14 GIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP---EDSLERLESALEELAEELGLDVSV 75 (76)
T ss_dssp THHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES---HHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred cHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC---cccHHHHHHHHHHHHHHCCcEEEE
Confidence 45666677888999999999999999998877765444 556677899999999999999876
No 27
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=72.89 E-value=14 Score=36.26 Aligned_cols=110 Identities=14% Similarity=0.167 Sum_probs=68.5
Q ss_pred CCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCCCCceeeeeeccccccCCCchHHHH---HHH
Q 014002 254 MPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIK---KAI 330 (432)
Q Consensus 254 gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~~GsG~H~H~Sl~~~~~~~g~~~~~---~~i 330 (432)
-|-+.=|.+.|.++..-.|-. -+=..+|++-++.|+. +| || .. -|.|+|+.+-|... -+....+ ++|
T Consensus 113 ~PD~lvfDLDP~~~~~f~~v~-~~A~~~r~~L~~lgL~-~f-~K--TS--G~kGlHV~vPl~~~---~~~~~~r~fa~~i 182 (245)
T TIGR02778 113 KPDRIVFDLDPGPGVAWKLVV-EAAQLIRELLDELGLE-SF-VK--TS--GGKGLHVYVPLRPT---LSWDEVKDFAKAL 182 (245)
T ss_pred CCCEEEEECCCCCCCCHHHHH-HHHHHHHHHHHHcCCc-cc-eE--cc--CCCeEEEEEECCCC---CCHHHHHHHHHHH
Confidence 589999999999887655444 4445589999999987 35 66 32 48899999999653 3344444 444
Q ss_pred HHHHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccc
Q 014002 331 LNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRE 380 (432)
Q Consensus 331 aGl~L~H~~al~a~~~nsYkRL~~~~~ap~~~~~sWG~~NR~a~IRvp~~ 380 (432)
+-...+..|.+.... -.|...++ - .++-|..++|+..+=-|.+
T Consensus 183 A~~l~~~~Pd~~t~~--~~k~~R~g----k-vfiDylqN~~g~T~vapYS 225 (245)
T TIGR02778 183 AQALAQQMPDRFTAE--MSKKNRVG----K-IFVDYLRNARGKTTVAPYS 225 (245)
T ss_pred HHHHHHHCchhhhhH--hhHHhCCC----C-EEEECccCCCCCeEEeccc
Confidence 443233334443332 11222222 1 2788888888877666644
No 28
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=71.86 E-value=23 Score=29.49 Aligned_cols=94 Identities=12% Similarity=0.037 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhccCccccEEEeeeeEEEeccCCCCCCCCCCCCCCCCCCCcccccccChhhHHHHHHHHHHHHHHcCCce
Q 014002 167 RHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINI 246 (432)
Q Consensus 167 R~~Lk~~l~~l~~~G~~~~~G~E~EF~L~~~~~~~~~g~p~~~~p~~~g~yy~~~~~~~~~~~~i~~~i~~al~~~GI~i 246 (432)
...-+++++.|++.|..+..-.++||++.-.+. +-++.+...+...|..|
T Consensus 3 ~~~n~~vl~~L~~~Gddl~~~r~ieh~~~f~~~------------------------------~~~~~f~~~~~~~g~~v 52 (104)
T PF06877_consen 3 IIENREVLEALEEDGDDLSKPRPIEHWFYFEDE------------------------------EDAEKFAEELEKLGYEV 52 (104)
T ss_dssp HHHHHHHHHHHHHHT--TTS-EEEEEEEEES-H------------------------------HHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEEEeCCH------------------------------HHHHHHHHHHHHCCCEE
Confidence 344567888888889999889999998875441 22233344567899999
Q ss_pred eeecC--CCCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcE
Q 014002 247 SGTNG--EVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVV 291 (432)
Q Consensus 247 e~~h~--E~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~ 291 (432)
+.... |-+.+.|.+.+.....+... .+.-.-.-+-.+|+++|..
T Consensus 53 ~~~~~~~~d~~~~~~~~~~~~~~~~~~-~I~~~~~~l~~lA~~~~g~ 98 (104)
T PF06877_consen 53 ESAEEDEEDGDGPYCLDISREMVLDYE-DINAITQELEDLAKEFGGE 98 (104)
T ss_dssp B----B-SS-SSBEEEEEEEEE-S-HH-HHHHHHHHHHHHHHHHT-E
T ss_pred EEeecccCCCCceEEEEEEEecCCCHH-HHHHHHHHHHHHHHHhCcE
Confidence 88765 67889999999876655433 3333344456788888764
No 29
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.45 E-value=7.1 Score=31.54 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCCceeeecCCCCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeeccc
Q 014002 230 DIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPK 297 (432)
Q Consensus 230 ~i~~~i~~al~~~GI~ie~~h~E~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPK 297 (432)
.++.++.+.|...|++|...+..+..|+|.+.+.-.-+ ...++.-.++.-+++++++.|+.+++.+.
T Consensus 13 Giva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~~~~~~~~L~~~l~~l~~~~~l~~~i~~~ 79 (88)
T cd04872 13 GIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-ESNLDFAELQEELEELGKELGVKIRIQHE 79 (88)
T ss_pred CHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-CCCCCHHHHHHHHHHHHHHcCCEEEEEhH
Confidence 45666667788999999999998888888766544322 11344667899999999999999998654
No 30
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.30 E-value=9.6 Score=29.81 Aligned_cols=65 Identities=12% Similarity=0.115 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCCceeeecCCCCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecc
Q 014002 230 DIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDP 296 (432)
Q Consensus 230 ~i~~~i~~al~~~GI~ie~~h~E~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmP 296 (432)
-++.++.+.|.+.|++|+.++.-...|+|-+.+.-.-+ ...+.-.++..+..+|++.|+.+++-|
T Consensus 11 Giv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p--~~~~~~~l~~~l~~l~~~l~l~i~~~~ 75 (75)
T cd04870 11 GLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP--DSADSEALLKDLLFKAHELGLQVRFEP 75 (75)
T ss_pred CHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC--CCCCHHHHHHHHHHHHHHcCceEEEeC
Confidence 45667777888999999999877777877666543211 111345679999999999999998754
No 31
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=68.55 E-value=22 Score=34.69 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=68.9
Q ss_pred CCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCCCCceeeeeeccccccCCCchHHHHH---H
Q 014002 253 VMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKK---A 329 (432)
Q Consensus 253 ~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~~GsG~H~H~Sl~~~~~~~g~~~~~~---~ 329 (432)
--|-+.=|.+.|.+++.-.|-.-. =..+|++-++.|+. +| || .. -|.|+|+.+-|... -+....+. +
T Consensus 100 e~PD~~vfDLDP~~~~~f~~v~~~-A~~~r~~L~~lgL~-s~-~K--TS--G~kGlHV~vPl~~~---~~~~~vr~fa~~ 169 (231)
T cd04863 100 GPPDRLVFDLDPGEPAGLVECARV-ALWLRDRLAALGLA-SF-PK--TS--GSKGLHLYVPLDGP---VSSDQTKEFAKA 169 (231)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHH-HHHHHHHHHHcCCc-cc-eE--CC--CCCeEEEEEEcCCC---CCHHHHHHHHHH
Confidence 359999999999988655554443 44588899999987 35 66 22 48999999999753 23444444 4
Q ss_pred HHHHHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccc
Q 014002 330 ILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRE 380 (432)
Q Consensus 330 iaGl~L~H~~al~a~~~nsYkRL~~~~~ap~~~~~sWG~~NR~a~IRvp~~ 380 (432)
|+-...+..|.+... .--|.-..+ - .++-|-.++|+..+=-|.+
T Consensus 170 ~A~~l~~~~P~~~t~--~~~k~~R~g----r-vfiDylqN~~g~T~vapYS 213 (231)
T cd04863 170 LARELEREHPDLVVS--RMTKSLRAG----K-VFVDWSQNDAAKTTIAPYS 213 (231)
T ss_pred HHHHHHHHCchhhhh--HhhHhhCCC----c-EEEECccCCCCCeEEeccc
Confidence 444323333544432 221211122 1 2788888888877666644
No 32
>PRK00194 hypothetical protein; Validated
Probab=67.58 E-value=10 Score=30.58 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHcCCceeeecCCCCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecc
Q 014002 230 DIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDP 296 (432)
Q Consensus 230 ~i~~~i~~al~~~GI~ie~~h~E~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmP 296 (432)
-++.++.+.|.+.|++|..++.....|.+.+.+.-.-+ ...+..-.++.-+++++++.|+.++|.+
T Consensus 15 Giva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 80 (90)
T PRK00194 15 GIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS-ESKKDFAELKEELEELGKELGVKIRIQH 80 (90)
T ss_pred CHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec-CCCCCHHHHHHHHHHHHHHcCCEEEEEh
Confidence 45566666788999999999998888887773322111 1122344568889999999999999854
No 33
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=63.80 E-value=51 Score=32.12 Aligned_cols=110 Identities=17% Similarity=0.251 Sum_probs=68.2
Q ss_pred CCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCCCCceeeeeeccccccCCCchHHHH---HHH
Q 014002 254 MPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIK---KAI 330 (432)
Q Consensus 254 gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~~GsG~H~H~Sl~~~~~~~g~~~~~---~~i 330 (432)
-|-+.=|.+.|.+++.-.| ++-+=..+|++-.+.|+. +| || .. -|.|+|+.+-|... -+....+ ++|
T Consensus 97 ~PD~lvfDLDP~~~~~f~~-v~~~A~~vr~~L~~lgL~-~f-~K--TS--G~kGlHV~vPl~~~---~~~~~~r~fa~~i 166 (227)
T cd04861 97 RPDRLVFDLDPGPGVPFED-VVEAALLLRELLDELGLE-SF-PK--TS--GGKGLHVYVPLAPR---YTWDEVRAFAKAL 166 (227)
T ss_pred CCCEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHcCCc-cc-eE--cc--CCCeEEEEEEcCCC---CCHHHHHHHHHHH
Confidence 5899999999998865444 345556778888899987 35 66 32 48899999999753 3344444 455
Q ss_pred HHHHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccc
Q 014002 331 LNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRE 380 (432)
Q Consensus 331 aGl~L~H~~al~a~~~nsYkRL~~~~~ap~~~~~sWG~~NR~a~IRvp~~ 380 (432)
+-...+..|.+......--+|- + - .++-|..++|+..+=-|.+
T Consensus 167 A~~l~~~~P~~~t~~~~k~~R~--g----r-vfiDy~qN~~g~T~vapYS 209 (227)
T cd04861 167 ARELARRLPDLFTAEMAKAKRG--G----K-IFVDYLQNARGKTTVAPYS 209 (227)
T ss_pred HHHHHHHCchhhhhHhhHHhCC--C----C-EEEECccCCCCCeEEeccc
Confidence 5442333354433321111222 1 1 2788888888877666544
No 34
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=63.77 E-value=8.1 Score=43.95 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=14.2
Q ss_pred ccEEEeeeeEEEeccC
Q 014002 183 VPWFGIEQEYTLLQQN 198 (432)
Q Consensus 183 ~~~~G~E~EF~L~~~~ 198 (432)
...+|+|-|+.+.+.+
T Consensus 18 ~~~~GiE~E~lrVd~~ 33 (752)
T PRK02471 18 QANFGLEKESLRVDSD 33 (752)
T ss_pred cCCcceEeeeeEECCC
Confidence 5689999999999876
No 35
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=62.19 E-value=7.1 Score=40.19 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHcCcEEeeccc
Q 014002 271 GDHIWCSRYLLERITEQAGVVLSLDPK 297 (432)
Q Consensus 271 aD~l~~~R~~ik~VA~~~Gl~aTFmPK 297 (432)
+|.++.+|+-+|++|.+.|++.||||-
T Consensus 276 ~~sLvklr~elk~~a~e~~IKltfmPf 302 (474)
T KOG0558|consen 276 CDSLVKLRQELKENAKERGIKLTFMPF 302 (474)
T ss_pred hHHHHHHHHHHhhhhhhcCceeeehHH
Confidence 699999999999999999999999985
No 36
>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=60.88 E-value=37 Score=33.12 Aligned_cols=110 Identities=10% Similarity=0.167 Sum_probs=69.4
Q ss_pred CCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCCCCceeeeeeccccccCCCchHHHH---HH
Q 014002 253 VMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIK---KA 329 (432)
Q Consensus 253 ~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~~GsG~H~H~Sl~~~~~~~g~~~~~---~~ 329 (432)
--|-+.=|.+.|. +. .=++.+-+=..+|++-++.|+.+ | || .. -|.|+|+.+-|... -+....+ ++
T Consensus 98 e~PD~~vfDLDP~-~~-~f~~v~~~A~~~r~~L~~~gL~~-f-~K--TS--G~kGlHv~vPl~~~---~~~~~~r~fa~~ 166 (228)
T cd04864 98 EHPDLMVFDLDPS-AD-DIEAVRTAALAVRELLDELGLPS-F-VK--TT--GSRGFHVVVPLDGR---GDFDDVRAFAAE 166 (228)
T ss_pred CCCCEEEEecCCC-CC-CHHHHHHHHHHHHHHHHHcCCcc-c-eE--cc--CCCeEEEEEEcCCC---CCHHHHHHHHHH
Confidence 4589999999998 44 44556667778899999999873 5 67 32 48899999999753 2344444 44
Q ss_pred HHHHHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccc
Q 014002 330 ILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRE 380 (432)
Q Consensus 330 iaGl~L~H~~al~a~~~nsYkRL~~~~~ap~~~~~sWG~~NR~a~IRvp~~ 380 (432)
|+-..-+..|.+.... -.|...++ - .++-|..++|+..+=-|.+
T Consensus 167 lA~~l~~~~P~~~t~~--~~k~~R~g----r-vfiDylqN~~g~T~vapYS 210 (228)
T cd04864 167 AADALAKRDPDLLTTE--ARKAKRGD----R-VFLDIGRNAYGQTAVAPYA 210 (228)
T ss_pred HHHHHHHHCchhhhHH--hhHHhCCC----c-EEEECccCCCCCeEEeccc
Confidence 4444233334443332 22222222 1 2788888888877666644
No 37
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=59.54 E-value=41 Score=32.69 Aligned_cols=112 Identities=11% Similarity=0.066 Sum_probs=69.0
Q ss_pred CCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCCCCceeeeeeccccccCCCchHHHHHHHHH
Q 014002 253 VMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILN 332 (432)
Q Consensus 253 ~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~~GsG~H~H~Sl~~~~~~~g~~~~~~~iaG 332 (432)
--|.+.=|.+.|.++..-.| ++-+=..+|++-++.|+. +| || .. -|.|+|+.+-|.+.+ .+....+.|...
T Consensus 91 e~PD~lvfDLDP~~~~~f~~-v~~~A~~vr~~L~~lgL~-~f-~K--TS--G~kGlHV~vPl~~~~--~~~~~~r~fa~~ 161 (223)
T cd04866 91 NKPSEIVFDLDPPSRDHFSL-AVEAANLLKEILDALGLT-SF-VK--TS--GNKGLQVYIPLPDNK--FTYDETRLFTEF 161 (223)
T ss_pred CCCCeEEEECCCCCCCCHHH-HHHHHHHHHHHHHHcCCc-cc-eE--cc--CCCeEEEEEEcCCCC--CCHHHHHHHHHH
Confidence 36999999999998865444 345566788889999987 45 66 32 488999999997211 234444444444
Q ss_pred H---HHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccc
Q 014002 333 L---SLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRE 380 (432)
Q Consensus 333 l---~L~H~~al~a~~~nsYkRL~~~~~ap~~~~~sWG~~NR~a~IRvp~~ 380 (432)
+ .-+..|.+.... --|...++ - .++-|..|+|+..+=-|.+
T Consensus 162 iA~~l~~~~P~~~t~~--~~k~~R~g----k-VfiDylqN~~g~T~vapYS 205 (223)
T cd04866 162 IAEYLCQQFPELFTTE--RLKKNRHN----R-LYLDYVQHAEGKTIIAPYS 205 (223)
T ss_pred HHHHHHHHCchhhhHH--hhHHhCCC----C-EEEECccCCCCCeEEeccc
Confidence 4 122234433222 11222222 1 2788888888887766654
No 38
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=58.48 E-value=74 Score=31.03 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=69.3
Q ss_pred CCCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCCCCceeeeeeccccccCCCchHHHH---H
Q 014002 252 EVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIK---K 328 (432)
Q Consensus 252 E~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~~GsG~H~H~Sl~~~~~~~g~~~~~---~ 328 (432)
.--|-+.=|.|.|.+++.-.|- +-+=..+|++-++.|+.+ | || .. -|.|+|+.+-|... -+....+ +
T Consensus 95 ~e~PD~lvfDLDP~~~~~f~~v-~~~A~~~r~~L~~lgL~~-~-~K--TS--G~kGlHV~vPl~~~---~~~~~~r~fa~ 164 (227)
T cd04862 95 LERPDRIVFDLDPGPGVPWKAV-VEAALLVRELLDELGLES-F-VK--TS--GGKGLHVVVPLAPR---AGWDEVKAFAK 164 (227)
T ss_pred CCCCCEEEEECCCCCCCCHHHH-HHHHHHHHHHHHHcCCcc-c-eE--cc--CCCeEEEEEEcCCC---CCHHHHHHHHH
Confidence 3469999999999987654443 455567888888999873 4 66 32 48899999999753 2333444 4
Q ss_pred HHHHHHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccc
Q 014002 329 AILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRE 380 (432)
Q Consensus 329 ~iaGl~L~H~~al~a~~~nsYkRL~~~~~ap~~~~~sWG~~NR~a~IRvp~~ 380 (432)
+|+...-+..|.+..... -|...++ - .++-|..|+|+..+=-|.+
T Consensus 165 ~lA~~l~~~~P~~~t~~~--~k~~R~g----k-vfiDylqN~~g~T~vapYS 209 (227)
T cd04862 165 ALAQHLARTNPDRFVATM--GKAKRVG----K-IFIDYLRNGRGATAVAPYS 209 (227)
T ss_pred HHHHHHHHHCchhhhHHh--hHHhCCC----c-EEEECccCCCCCeEEeccc
Confidence 444432233344433321 1222222 1 2788888888877666644
No 39
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=55.38 E-value=35 Score=26.87 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCCceeeecCCCCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeec
Q 014002 230 DIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLD 295 (432)
Q Consensus 230 ~i~~~i~~al~~~GI~ie~~h~E~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFm 295 (432)
-++.++.+.|.+.|.+|...+.-...|+|-+-+..... .+..-..+..++.+|+++|+.++.+
T Consensus 13 GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~~~~~~l~~~l~~~~~~~~l~i~v~ 75 (77)
T cd04893 13 GILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---WDAIAKLEAALPGLARRLDLTLMMK 75 (77)
T ss_pred hHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---cccHHHHHHHHHHHHHHcCCEEEEE
Confidence 46667777888999999998888888888665554432 1345567888999999999988753
No 40
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=53.34 E-value=60 Score=31.68 Aligned_cols=110 Identities=14% Similarity=0.217 Sum_probs=68.2
Q ss_pred CCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCCCCceeeeeeccccccCCCchHHHH---HHH
Q 014002 254 MPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIK---KAI 330 (432)
Q Consensus 254 gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~~GsG~H~H~Sl~~~~~~~g~~~~~---~~i 330 (432)
-|-+.=|.+.|.+++.-.| ++-+=..+|++-++.|+. +| || .. -|.|+|+.+-|... -+....+ ++|
T Consensus 98 ~PD~lvfDLDP~~~~~f~~-v~~~A~~vr~~L~~lgL~-sf-~K--TS--G~kGlHv~vPl~~~---~~~~~~r~fa~~i 167 (228)
T cd04865 98 HPDELVIDLDPQPGTSFED-VVEVALLVREVLDELGLR-GY-PK--TS--GARGLHIYVPIAPR---YTFEEVRRFAELL 167 (228)
T ss_pred CCCEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHcCCc-cc-eE--cc--CCCeEEEEEEcCCC---CCHHHHHHHHHHH
Confidence 5899999999998865444 445556788899999987 45 66 32 48899999999653 2334444 445
Q ss_pred HHHHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccc
Q 014002 331 LNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRE 380 (432)
Q Consensus 331 aGl~L~H~~al~a~~~nsYkRL~~~~~ap~~~~~sWG~~NR~a~IRvp~~ 380 (432)
+-..-+..|.+.-.. -.|.-.++ - .++-|..|+|+..+=-|.+
T Consensus 168 A~~l~~~~P~~~t~~--~~k~~R~g----r-vfiDylqN~~g~T~vapYS 210 (228)
T cd04865 168 AREVERRLPDLATTE--RWKKERGG----R-VYLDYLQNARGKTLAAPYS 210 (228)
T ss_pred HHHHHHHCchhhhhH--hhHHhCCC----C-EEEECccCCCCCeEEeccc
Confidence 444223334443322 11222222 1 2788888888876665544
No 41
>TIGR02776 NHEJ_ligase_prk DNA ligase D. Members of this protein family are DNA ligases involved in the repair of DNA double-stranded breaks by non-homologous end joining (NHEJ). The system of the bacterial Ku protein (TIGR02772) plus this DNA ligase is seen in about 20 % of bacterial genomes to date and at least one archaeon (Archeoglobus fulgidus). This model describes a central and a C-terminal domain. These two domains may be permuted, as in genus Mycobacterium, or divided into tandem ORFs, and therefore not be identified by this model. An additional N-terminal 3'-phosphoesterase (PE) domain present in some but not all examples of this ligase is not included in the seed alignment for this model; This alignment models only the central ATP-dependent ligase domain and the C-terminal polymerase domain. Most examples of genes for this ligase are adjacent to the gene for Ku.
Probab=47.18 E-value=77 Score=34.91 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=66.5
Q ss_pred CCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCCCCceeeeeeccccccCCCchHHHHHHHHH
Q 014002 253 VMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILN 332 (432)
Q Consensus 253 ~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~~GsG~H~H~Sl~~~~~~~g~~~~~~~iaG 332 (432)
--|.+.=|.|.|.++..-.|- +-+=..+|++-++.|+. +| || .. -|.|+|+.+-|... .-+....+.|...
T Consensus 389 ~~Pd~~v~DLDP~~~~~f~~v-~~~A~~~r~~L~~~gl~-~~-~K--tS--G~kGlhv~vPl~~~--~~~~~~~~~fa~~ 459 (552)
T TIGR02776 389 DKPDRIVFDLDPPPGVAFKLA-VEAAQLMKQLLDELGLV-SF-VK--TS--GGKGLHVVVPLRPN--TFTWDETKLFAKA 459 (552)
T ss_pred CCCCEEEEECCCCCCCCHHHH-HHHHHHHHHHHHHcCCc-cc-eE--cc--CCCeEEEEEEcCCC--CCCHHHHHHHHHH
Confidence 368999999999987654443 34445588889999987 35 66 22 48899999999751 1344455544444
Q ss_pred H---HHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccc
Q 014002 333 L---SLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRE 380 (432)
Q Consensus 333 l---~L~H~~al~a~~~nsYkRL~~~~~ap~~~~~sWG~~NR~a~IRvp~~ 380 (432)
| ..+..|.+.... -.|.-.++ - .++-|..++|+..+=-|.+
T Consensus 460 ~a~~~~~~~P~~~t~~--~~k~~R~g----r-v~iDy~qn~~~~T~~apYS 503 (552)
T TIGR02776 460 IAEYLARQFPERFTTE--MGKKNRVG----R-IFIDYLRNARGKTTVAPYS 503 (552)
T ss_pred HHHHHHHHCcceehhh--hhHhhCCC----C-EEEEcccCCCCCeEEeccc
Confidence 4 122223333221 11111122 1 2777888888766655543
No 42
>PRK05972 ligD ATP-dependent DNA ligase; Reviewed
Probab=44.02 E-value=1.3e+02 Score=35.02 Aligned_cols=110 Identities=13% Similarity=0.139 Sum_probs=66.3
Q ss_pred CCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCCCCceeeeeeccccccCCCchHHHHHHHHHH
Q 014002 254 MPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKKAILNL 333 (432)
Q Consensus 254 gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~~GsG~H~H~Sl~~~~~~~g~~~~~~~iaGl 333 (432)
-|.+.=|.|.|.+++.-.+ ++-+=..+|++-.+.|+. +| || .. -|.|+|+.+-|... -++...+.|...|
T Consensus 683 ~Pd~lvfDLDP~~~~~f~~-v~~aA~~~r~~L~~lgL~-sf-~K--TS--G~kGlHv~vPl~~~---~~~~~~~~fa~~i 752 (860)
T PRK05972 683 VPDRLVFDLDPGPGVPWKA-VVEAARLMRTRLDELGLE-SF-LK--TS--GGKGLHVVVPLARR---LDWDEVKAFAQAV 752 (860)
T ss_pred CCCEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHcCCc-ee-eE--CC--CCCeEEEEEEcCCC---CCHHHHHHHHHHH
Confidence 5899999999998865444 445555688999999987 45 66 32 48899999999753 3344444444444
Q ss_pred ---HHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccc
Q 014002 334 ---SLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRE 380 (432)
Q Consensus 334 ---~L~H~~al~a~~~nsYkRL~~~~~ap~~~~~sWG~~NR~a~IRvp~~ 380 (432)
.-+..|.+. +...-+...++- .++-|-.++|+..+=-|.+
T Consensus 753 a~~l~~~~P~~~--t~~~~k~~R~gr-----ifiDylqN~~g~T~vapYS 795 (860)
T PRK05972 753 CQHMARDLPERF--LAKMGKKNRVGK-----IFLDYLRNGRGATTVAALS 795 (860)
T ss_pred HHHHHHHCchhe--hhhhhHhhCCCc-----EEEEccccCCCCeEEeccc
Confidence 122223332 222222222221 1677777777766555543
No 43
>PRK11191 RNase E inhibitor protein; Provisional
Probab=38.77 E-value=2.4e+02 Score=25.35 Aligned_cols=92 Identities=13% Similarity=-0.010 Sum_probs=56.7
Q ss_pred HHHHHHHhhccCccccEEEeeeeEEEeccCCCCCCCCCCCCCCCCCCCcccccccChhhHHHHHHHHHHHHHHcCCceee
Q 014002 169 RAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISG 248 (432)
Q Consensus 169 ~Lk~~l~~l~~~G~~~~~G~E~EF~L~~~~~~~~~g~p~~~~p~~~g~yy~~~~~~~~~~~~i~~~i~~al~~~GI~ie~ 248 (432)
.=+++++.|.+.|-.|-.-.++|+++.-.+. +.++.+...+..+|.+|..
T Consensus 13 ~~~eVi~~L~edGsd~~~~~~IEH~~~f~d~------------------------------~~lek~a~~a~klGyeV~~ 62 (138)
T PRK11191 13 ETREIIEELLEDGSDPDALYTIEHHFSADDF------------------------------DKLEKAAVEAFKLGYEVTD 62 (138)
T ss_pred HHHHHHHHHHHcCCCcCCCEEEEEEEecCCH------------------------------HHHHHHHHHHHHcCCeeec
Confidence 3467777777789999888888888764331 1122333345679999843
Q ss_pred e---cCCCCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcE
Q 014002 249 T---NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVV 291 (432)
Q Consensus 249 ~---h~E~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~ 291 (432)
. ..|-+..-|-+.+.....+...+=--..+ -+-.+|+++|..
T Consensus 63 ~ee~e~edg~~~~~~~~~~e~~l~~e~I~~~~~-~L~~LA~k~~g~ 107 (138)
T PRK11191 63 AEELELEDGDVIFCCDAVSEVALNAELIDAQVE-QLLALAEKFDVE 107 (138)
T ss_pred ccccccCCCCeEEEEEEEecCCCCHHHHHHHHH-HHHHHHHHhCCC
Confidence 2 23445456666666666665444333333 445789999863
No 44
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=35.54 E-value=69 Score=32.14 Aligned_cols=65 Identities=17% Similarity=0.061 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHcCCceeeecCC--CCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecc
Q 014002 230 DIADAHYKACLYAGINISGTNGE--VMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDP 296 (432)
Q Consensus 230 ~i~~~i~~al~~~GI~ie~~h~E--~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmP 296 (432)
-|+.++.+.|.+.|++|+.++.. .+.++|.+.+.-..+ +..+.-.+|..+..+|++.|+.++.-+
T Consensus 19 GIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p--~~~~~~~L~~~L~~l~~~l~l~i~i~~ 85 (286)
T PRK13011 19 GIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE--EGLDEDALRAGFAPIAARFGMQWELHD 85 (286)
T ss_pred CHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC--CCCCHHHHHHHHHHHHHHhCcEEEEee
Confidence 56777777889999999999885 678899886553311 223366789999999999999887763
No 45
>PF14395 COOH-NH2_lig: Phage phiEco32-like COOH.NH2 ligase-type 2
Probab=33.64 E-value=67 Score=31.87 Aligned_cols=56 Identities=18% Similarity=0.143 Sum_probs=32.3
Q ss_pred EEEecCC-hHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCCCCceeeeeecccc
Q 014002 259 EYQVGPS-VGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKS 316 (432)
Q Consensus 259 Ei~l~p~-~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~~GsG~H~H~Sl~~ 316 (432)
|+--.|. ++.+..+++........+.....++.--==..|+.| --.|.|+|||-..
T Consensus 52 ElRP~P~~~P~~L~~~i~~~l~~A~~~i~~~~l~W~AG~mP~~g--fp~GGHiHfsgv~ 108 (261)
T PF14395_consen 52 ELRPAPSPDPAELFENIRRALREAARRIPDRSLEWLAGSMPFPG--FPLGGHIHFSGVP 108 (261)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEecCCCCCCC--CCcCCeEEecCCC
Confidence 4444454 677788887555555555555555442222235555 2568999998654
No 46
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=30.70 E-value=57 Score=26.74 Aligned_cols=60 Identities=7% Similarity=-0.064 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCCceeeecCCCCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEe
Q 014002 229 RDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLS 293 (432)
Q Consensus 229 ~~i~~~i~~al~~~GI~ie~~h~E~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aT 293 (432)
.+.+....+.+.+.|++++-+..|+--..--+.+-+. ||+-+=||.++|+++..++..+-
T Consensus 25 ~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~-----a~~rvDFR~Lvr~L~~~f~~RIe 84 (88)
T PF04468_consen 25 EEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYT-----AESRVDFRELVRDLAREFKTRIE 84 (88)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEE-----eCCcCcHHHHHHHHHHHhCceEE
Confidence 3444444445678999999999999877777777776 88889999999999999998764
No 47
>COG3285 Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]
Probab=30.50 E-value=3.6e+02 Score=27.41 Aligned_cols=69 Identities=17% Similarity=0.348 Sum_probs=47.5
Q ss_pred cCCceeeecCCC----CCC-cEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCCCCceeeeeecccc
Q 014002 242 AGINISGTNGEV----MPG-QWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKS 316 (432)
Q Consensus 242 ~GI~ie~~h~E~----gpG-Q~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~~GsG~H~H~Sl~~ 316 (432)
..|++.-+.++. .|+ |.-|.+.|.+++.-.-- +-+=..+|+.-+..|+. +| || .. -|.|.|+=.=|..
T Consensus 107 galE~H~w~~~~~~~e~pd~r~VfDLDP~~gv~~~~v-veaA~~lr~~Ld~lGL~-~f-~K--TS--GGKG~Hv~~PL~~ 179 (299)
T COG3285 107 GALEFHPWGATIDDLEHPDERIVFDLDPGPGVAFAEV-VEAALELRDLLDELGLV-SF-PK--TS--GGKGLHVYVPLAP 179 (299)
T ss_pred ceEEeecCCCcccccCCCCcceeEecCCCCCCCHHHH-HHHHHHHHHHHHHcCCc-cc-ee--cc--CCCeeEEEEecCC
Confidence 335555544443 367 88899999888765433 33444789999999986 56 66 32 4899999988866
Q ss_pred c
Q 014002 317 M 317 (432)
Q Consensus 317 ~ 317 (432)
.
T Consensus 180 ~ 180 (299)
T COG3285 180 K 180 (299)
T ss_pred c
Confidence 3
No 48
>PRK09633 ligD ATP-dependent DNA ligase; Reviewed
Probab=30.28 E-value=1.5e+02 Score=33.06 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=65.7
Q ss_pred CCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCCCCceeeeeeccccccCCCchHHHHH---HH
Q 014002 254 MPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGYETIKK---AI 330 (432)
Q Consensus 254 gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~~GsG~H~H~Sl~~~~~~~g~~~~~~---~i 330 (432)
-|.+.=|.+.|.+++.-.| ++-+=..+|++-.+.|+. +| || .. -|.|+|+.+-|.... -+....+. +|
T Consensus 431 ~pd~~v~DLDP~~~~~~~~-v~~~A~~~r~~L~~~gl~-~~-~k--tS--G~kGlhv~vPl~~~~--~~~~~~~~fa~~~ 501 (610)
T PRK09633 431 RPTEIVFDLDPPSRDEFPL-AVEAALELKRLFDQFGLT-SF-VK--TS--GNKGLQLYIPLSKNA--FTYEETRLFTEFI 501 (610)
T ss_pred CCCEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHcCCc-cc-eE--cc--CCCeEEEEEEcCCCC--CCHHHHHHHHHHH
Confidence 5889999999988875444 344556778888889986 45 66 32 488999999996520 23444444 44
Q ss_pred HHHHHhHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeeeccc
Q 014002 331 LNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVANRGCSIRVGRE 380 (432)
Q Consensus 331 aGl~L~H~~al~a~~~nsYkRL~~~~~ap~~~~~sWG~~NR~a~IRvp~~ 380 (432)
+-...+..|.+. +..-.|...++- .++-|..++|+..+=-|.+
T Consensus 502 a~~~~~~~P~~~--t~~~~k~~R~gr-----vfiDy~qN~~~~T~~apYS 544 (610)
T PRK09633 502 AEYLCSQFPELF--TTERLKKNRGNR-----LYLDYVQHAEGKTIIAPYS 544 (610)
T ss_pred HHHHHHHCccee--hhhhhHhhCCCC-----EEEEcccCCCCCeEEeccc
Confidence 443122224332 222222222221 2778888888766655543
No 49
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=29.15 E-value=1.2e+02 Score=30.50 Aligned_cols=66 Identities=17% Similarity=-0.023 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCceeeecCCC--CCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecc
Q 014002 230 DIADAHYKACLYAGINISGTNGEV--MPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDP 296 (432)
Q Consensus 230 ~i~~~i~~al~~~GI~ie~~h~E~--gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmP 296 (432)
-|+.++.+.|.+.|++|+.++... ..|+|.+.+.-.. -...+.+-.++..+..++++.|+.+++..
T Consensus 18 GIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~~~~~~L~~~L~~l~~~l~l~i~l~~ 85 (286)
T PRK06027 18 GIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLIFNLETLRADFAALAEEFEMDWRLLD 85 (286)
T ss_pred cHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCCCCHHHHHHHHHHHHHHhCCEEEEcc
Confidence 567777778899999999998887 7788877655321 01112255679999999999999988764
No 50
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=29.08 E-value=54 Score=30.95 Aligned_cols=73 Identities=12% Similarity=0.039 Sum_probs=51.1
Q ss_pred ccccChhhHHHHHHHHHHHHHHcCCceeeecCCCCCC------cEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEe
Q 014002 220 GAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPG------QWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLS 293 (432)
Q Consensus 220 ~~~~~~~~~~~i~~~i~~al~~~GI~ie~~h~E~gpG------Q~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aT 293 (432)
..+.|+ --|+.++.+.+...||+|+..+++..+. .|.+.+.-. +-+.-++-.+|.-+.++|.+.++.++
T Consensus 100 v~G~Dr---PGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~--lP~~~~~~~L~~~l~~l~~eL~vd~~ 174 (190)
T PRK11589 100 VEVADS---PHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAH--SPASQDAANIEQAFKALCTELNAQGS 174 (190)
T ss_pred EEECCC---CCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEE--cCCCCCHHHHHHHHHHHHHHhCceEE
Confidence 345665 4677778888999999999999986664 343333221 11111234578999999999999999
Q ss_pred eccc
Q 014002 294 LDPK 297 (432)
Q Consensus 294 FmPK 297 (432)
+-|.
T Consensus 175 l~~~ 178 (190)
T PRK11589 175 INVV 178 (190)
T ss_pred EEEe
Confidence 9876
No 51
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.57 E-value=78 Score=24.34 Aligned_cols=60 Identities=12% Similarity=-0.068 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCceeeecCC--CCCCcEEEEecCChHHHHh-HHHHHHHHHHHHHHHHcCcE
Q 014002 230 DIADAHYKACLYAGINISGTNGE--VMPGQWEYQVGPSVGIDAG-DHIWCSRYLLERITEQAGVV 291 (432)
Q Consensus 230 ~i~~~i~~al~~~GI~ie~~h~E--~gpGQ~Ei~l~p~~~l~aa-D~l~~~R~~ik~VA~~~Gl~ 291 (432)
-++.++.+.+.+.|++|..++.- ...+.|.+.+.-..+ .. .+.-.++..+..+|++.|+.
T Consensus 11 Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~l~~~l~~l~~~l~~~ 73 (74)
T cd04875 11 GIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE--GFDLSREALEAAFAPVAAEFDMD 73 (74)
T ss_pred CHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC--CCCCCHHHHHHHHHHHHHHcCCc
Confidence 45666667788999999998776 456666665543322 11 13456788889999888753
No 52
>COG4456 VagC Virulence-associated protein and related proteins [Function unknown]
Probab=25.98 E-value=48 Score=26.71 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=21.3
Q ss_pred cCCCcceeeecccCCCCCccEEEecCCCC
Q 014002 368 VANRGCSIRVGRETEKQGKGYLEDRRPAS 396 (432)
Q Consensus 368 ~~NR~a~IRvp~~~~~~~~~r~E~R~pda 396 (432)
..||+-+||+|....-++ .++|+++-+.
T Consensus 7 ~snrSQAVRLP~e~~f~~-~~VeI~r~G~ 34 (74)
T COG4456 7 RSNRSQAVRLPKEFRFPE-DRVEIIREGD 34 (74)
T ss_pred ecCCeeeEecchheecCC-cEEEEEEeCC
Confidence 479999999998754433 7888877664
No 53
>COG4519 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.61 E-value=2e+02 Score=23.72 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHhhccCccccEEEeeeeEEE
Q 014002 165 NKRHRAAEIFSNSKVSAEVPWFGIEQEYTL 194 (432)
Q Consensus 165 ~pR~~Lk~~l~~l~~~G~~~~~G~E~EF~L 194 (432)
=||..++.+++.+ +-.|+++||.-
T Consensus 34 wPRRT~QDvikAl------pglgi~l~FvQ 57 (95)
T COG4519 34 WPRRTAQDVIKAL------PGLGIVLEFVQ 57 (95)
T ss_pred CchhHHHHHHHhC------cCCCeEEEeee
Confidence 5899999999877 44566777754
No 54
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=24.58 E-value=42 Score=28.68 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=18.8
Q ss_pred HHcCCceeeecCCCCCCcEEEEec
Q 014002 240 LYAGINISGTNGEVMPGQWEYQVG 263 (432)
Q Consensus 240 ~~~GI~ie~~h~E~gpGQ~Ei~l~ 263 (432)
.++|=+|+++.-+ +|||||||+.
T Consensus 55 ~a~ge~ietIrI~-~pG~YeiNl~ 77 (112)
T COG3364 55 GAQGEPIETIRIL-RPGVYEINLE 77 (112)
T ss_pred hcccCcceEEEEe-cCceEEEehh
Confidence 4678788888766 7999999985
No 55
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=24.27 E-value=1.3e+02 Score=24.15 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHcCCceeeecCCCCC---------C--cEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeec
Q 014002 229 RDIADAHYKACLYAGINISGTNGEVMP---------G--QWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLD 295 (432)
Q Consensus 229 ~~i~~~i~~al~~~GI~ie~~h~E~gp---------G--Q~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFm 295 (432)
..++.++...|.+.|++|+.++.-.+- . =.|+.+...+ . +.--.|.-+..++++.|+.++|-
T Consensus 11 a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~--~---~~~~lr~~L~~la~elgvDIavQ 83 (84)
T cd04871 11 AEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQP--A---DLEALRAALLELASELNVDIAFQ 83 (84)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCC--C---CHHHHHHHHHHHhcccCceEEEe
Confidence 456677777889999999988875322 1 2244444222 1 22345888889999999998873
No 56
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=23.13 E-value=1.5e+02 Score=34.11 Aligned_cols=62 Identities=16% Similarity=0.106 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHcCCceeeecCCCCCCcEEEEecCChH------HHHhHHHHHHHHHHHHHHHHcCcEEeec
Q 014002 228 GRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVG------IDAGDHIWCSRYLLERITEQAGVVLSLD 295 (432)
Q Consensus 228 ~~~i~~~i~~al~~~GI~ie~~h~E~gpGQ~Ei~l~p~~~------l~aaD~l~~~R~~ik~VA~~~Gl~aTFm 295 (432)
..+|++++ ...++..-|-+.-.+..||-+||+|. +.+.=.+..++.-+.+||++||+.++|.
T Consensus 415 a~~im~~l------l~~p~yr~~l~~~~~~QeVMlGYSDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l~~F 482 (794)
T PF00311_consen 415 APDIMEEL------LSNPAYRAHLKARGNRQEVMLGYSDSNKDGGYLAANWALYKAQEALVAVARKHGVKLRFF 482 (794)
T ss_dssp HHHHHHHH------CCSHHHHHHCTT---EEEEEEECCCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EEEEE
T ss_pred HHHHHHHH------HcCHHHHHHHhcCcceEEEEeccccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 35666654 56677666666545678999999986 4466778889999999999999999975
No 57
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=20.76 E-value=1.8e+02 Score=22.19 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=30.4
Q ss_pred HHHHHHHcCCceeeecCCCCCCcEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCc
Q 014002 235 HYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGV 290 (432)
Q Consensus 235 i~~al~~~GI~ie~~h~E~gpGQ~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl 290 (432)
+.+.|..+|++++. ..+ .+++++...+-.. .+...--++-+||+-+|+
T Consensus 24 i~~~L~~lg~~~~~-~~~--~~~~~v~~P~~R~-----Di~~~~DliEei~r~~Gy 71 (71)
T smart00874 24 IEEILKRLGFEVEV-SGD--DDTLEVTVPSYRF-----DILIEADLIEEVARIYGY 71 (71)
T ss_pred HHHHHHHCCCeEEe-cCC--CCeEEEECCCCcc-----ccCcccHHHHHHHHHhCC
Confidence 44467889999964 111 4578887776421 233334477888888875
No 58
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.28 E-value=9.3e+02 Score=24.59 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHcCCceeeecCCCCCC--cEEEEecCChHHHHhHHHHHHHHHHHHHHHHcCcEEeecccccCCCCCCc
Q 014002 229 RDIADAHYKACLYAGINISGTNGEVMPG--QWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGA 306 (432)
Q Consensus 229 ~~i~~~i~~al~~~GI~ie~~h~E~gpG--Q~Ei~l~p~~~l~aaD~l~~~R~~ik~VA~~~Gl~aTFmPKP~~~~~~Gs 306 (432)
+++.. +.+.+...||..--+..+.-|- .-|+ ++.-.-.+++. -.-|.++|+++|+..||+|=.|..
T Consensus 52 ~~l~~-~L~~n~~~~I~f~RisS~l~P~ash~~~--~~~~~~~~~~~----l~~iG~~a~~~~iRLS~Hp~qfi~----- 119 (312)
T TIGR00629 52 RDTMK-TLHWNIGHGIPFYRFSSSIFPFASHPDV--GYDLVTFAQKE----LREIGELAKTHQHRLTFHPGQFTQ----- 119 (312)
T ss_pred HHHHH-HHHHHHHcCCcEEecCccccCcCcCchh--hhhHHHHHHHH----HHHHHHHHHHcCeEEEECCCcccc-----
Confidence 44443 4457888999999988887762 1122 22111122222 234778999999999999987653
Q ss_pred eeeeeeccccccCCCchHHHHHHHHHHHHhHHHHhhcccc
Q 014002 307 GCHTNYSTKSMREEGGYETIKKAILNLSLRHKEHISAYGE 346 (432)
Q Consensus 307 G~H~H~Sl~~~~~~~g~~~~~~~iaGl~L~H~~al~a~~~ 346 (432)
++- ..-..++..|.-| ..|+.-+.+++.
T Consensus 120 -----LnS------~~~evv~~Si~~L-~~ha~~l~~mg~ 147 (312)
T TIGR00629 120 -----FTS------PRESVVKSAIRDL-AYHDEMLSAMKL 147 (312)
T ss_pred -----CCC------CCHHHHHHHHHHH-HHHHHHHHHcCC
Confidence 222 1224556777777 888888777764
Done!