BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014003
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 108/252 (42%), Gaps = 13/252 (5%)
Query: 152 PKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGI-ALPLRSDKLYSG 210
P N Y L ++ E +W CG L ++ + G+ L K+ SG
Sbjct: 93 PPNSFYRALYPKIIQDIET-IESNWRCGRH--SLQRIHCRSETSKGVYCLQYDDQKIVSG 149
Query: 211 SRDGTVQLWDCHTGQSASVINLGAEVGSLIC----EGPWVFVGMPNVVKAWHIESSAEF- 265
RD T+++WD +T + + L GS++C E + + V+ W + +
Sbjct: 150 LRDNTIKIWDKNTLECKRI--LTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLN 207
Query: 266 SLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG 325
+L V + N M+ ++D +I VW T L +L GH V +
Sbjct: 208 TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD--ITLRRVLVGHRAAVNVVDFD 265
Query: 326 GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTE 385
K + S S D TI+VW+ T E V TLNGH L D+ ++S S DNTI++W +
Sbjct: 266 DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 325
Query: 386 EGNLEVAYTHNE 397
L V H E
Sbjct: 326 GACLRVLEGHEE 337
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 114/259 (44%), Gaps = 31/259 (11%)
Query: 188 LEGHKKAVSGIALPLRSDK--LYSGSRDGTVQLWDCHTGQSASVI--NLGAEVGSLICEG 243
L GH +G L L+ D+ + +GS D TV++WD +TG+ + + + A + G
Sbjct: 169 LTGH----TGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG 224
Query: 244 PWVFVGMPNVVKAWHIESSAEFSLD----GPVGEVYSMVVANEMLFAGAQDGNILVWKGI 299
V + W + S + +L G V + ++ + + + D I VW
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW--- 281
Query: 300 PNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAP 359
NT + + L GH R + CL + + SGS DNTIR+WD++ + L GH +
Sbjct: 282 -NT-STCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV 339
Query: 360 MSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPV---- 415
+ ++ ++S + D IKVW +L A G L L L + G
Sbjct: 340 RCIRFDNKRIVSGAYDGKIKVW------DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF 393
Query: 416 ----LICSCNDDSVHLYEL 430
++ S +DD++ +++
Sbjct: 394 DEFQIVSSSHDDTILIWDF 412
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 112/253 (44%), Gaps = 18/253 (7%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC--- 241
L L GH V + +R + + SGS D T+++W+ TG+ + L ++ C
Sbjct: 152 LRTLVGHTGGV--WSSQMRDNIIISGSTDRTLKVWNAETGEC--IHTLYGHTSTVRCMHL 207
Query: 242 -EGPWVFVGMPNVVKAWHIESSAEFS-LDGPVGEVYSMVVANEMLFAGAQDGNILVWKGI 299
E V ++ W IE+ L G V V + + +GA D + VW
Sbjct: 208 HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD-- 265
Query: 300 PNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAP 359
P T+ L+GHT V L G + SGS+D +IRVWD++T + TL GH
Sbjct: 266 PETETCLHT---LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT 322
Query: 360 MSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICS 419
+ D L+S + D+T+K+W + L+ N+ + N +I S
Sbjct: 323 SGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN----KNFVITS 378
Query: 420 CNDDSVHLYELPS 432
+D +V L++L +
Sbjct: 379 SDDGTVKLWDLKT 391
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 311 LLKGHT-RPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYL 369
+LKGH +TCL G R+ SGS DNT++VW T + + TL GHT S D +
Sbjct: 113 VLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNII 172
Query: 370 LSCSLDNTIKVW 381
+S S D T+KVW
Sbjct: 173 ISGSTDRTLKVW 184
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 83/208 (39%), Gaps = 47/208 (22%)
Query: 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC---EGP 244
L GH V + L ++ SGSRD T+++WD TGQ V L V ++ C +G
Sbjct: 195 LYGHTSTVR--CMHLHEKRVVSGSRDATLRVWDIETGQCLHV--LMGHVAAVRCVQYDGR 250
Query: 245 WVFVGMPN-VVKAWHIES-SAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVW------ 296
V G + +VK W E+ + +L G VYS+ + +G+ D +I VW
Sbjct: 251 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN 310
Query: 297 ------------KGIPNTQNPF-----------------QLAALLKG---HTRPVTCLAV 324
G+ N Q L+G H VTCL
Sbjct: 311 CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 370
Query: 325 GGKRLYSGSMDNTIRVWDLDTLEAVMTL 352
+ + S D T+++WDL T E + L
Sbjct: 371 NKNFVITSSDDGTVKLWDLKTGEFIRNL 398
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 120/265 (45%), Gaps = 27/265 (10%)
Query: 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241
+ ++ L GH KAVS + + L S S D +++W + G+ I+ G ++G I
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLG--IS 72
Query: 242 EGPW-------VFVGMPNVVKAWHIESSAEF-SLDGPVGEVY--SMVVANEMLFAGAQDG 291
+ W V +K W + S +L G V+ + + ++ +G+ D
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV 349
++ +W + + L L H+ PV+ + G + S S D R+WD + + +
Sbjct: 133 SVRIW----DVKTGMCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 350 MTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTH-NEDHGVLALG 405
TL + P+S + + +Y+L+ +LDNT+K+W ++ L+ H NE + + A
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 406 GLNDPDGNPVLICSCNDDSVHLYEL 430
+ G ++ D+ V+++ L
Sbjct: 248 SVT---GGKWIVSGSEDNMVYIWNL 269
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 88/223 (39%), Gaps = 40/223 (17%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG----------QSASVINLGA 234
L L+GH V +S+ + SGS D +V++WD TG S ++
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL----DGPVGEVYSMVVANEMLFAGAQD 290
+ GSLI + + + W S D P + + A D
Sbjct: 163 D-GSLIVSSSY-----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 291 GNILVWKGIPNTQNPFQLAALLK---GHTRPVTCL-----AVGGKRLYSGSMDNTIRVWD 342
+ +W + LK GH C+ GGK + SGS DN + +W+
Sbjct: 217 NTLKLWD--------YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Query: 343 LDTLEAVMTLNGHTDAPMSLLC--WDQYLLSCSLDN--TIKVW 381
L T E V L GHTD +S C + + S +L+N TIK+W
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 33/203 (16%)
Query: 188 LEGHKKAVSGIALPLRSDKLY--SGSRDGTVQLWDCHTGQSASVINLGAE-----VGSLI 240
EGH V + + + Y +GSRD T+ +W + +SV + G E V
Sbjct: 199 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL--PKESSVPDHGEEHDYPLVFHTP 256
Query: 241 CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIP 300
E P+ FVG+ L G + V ++ ++ +G+ D ++VW
Sbjct: 257 EENPY-FVGV----------------LRGHMASVRTVSGHGNIVVSGSYDNTLIVWD--- 296
Query: 301 NTQNPFQLAALLKGHTRPV--TCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA 358
+ +L GHT + T KR S SMD TIR+WDL+ E + TL GHT
Sbjct: 297 --VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 354
Query: 359 PMSLLCWDQYLLSCSLDNTIKVW 381
L D++L+S + D +I+ W
Sbjct: 355 VGLLRLSDKFLVSAAADGSIRGW 377
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 110/245 (44%), Gaps = 27/245 (11%)
Query: 184 MLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243
L +L GH V + L SGS D TV++WD G V EG
Sbjct: 154 FLLQLSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVF-----------EG 201
Query: 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQ 303
V ++V+ +I+ S D + V+ + + + G + LV+ +
Sbjct: 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTL-HVWKLPKESSVPDHGEEHDYPLVFH--TPEE 258
Query: 304 NPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLL 363
NP+ +L+GH V ++ G + SGS DNT+ VWD+ ++ + L+GHTD S +
Sbjct: 259 NPY-FVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI 317
Query: 364 CWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC 420
+D + +S S+D TI++W + N E+ YT ++ L L+D L+ +
Sbjct: 318 -YDHERKRCISASMDTTIRIWDLE---NGELMYTLQGHTALVGLLRLSD----KFLVSAA 369
Query: 421 NDDSV 425
D S+
Sbjct: 370 ADGSI 374
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Query: 312 LKGH-TRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSL-LCWDQYL 369
L+GH T +TCL + +G+ D IRV+D + ++ L+GH +L L
Sbjct: 117 LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 176
Query: 370 LSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429
+S S D T++VW + + V HN L + + ++ D+++H+++
Sbjct: 177 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI---KYIVTGSRDNTLHVWK 233
Query: 430 LP 431
LP
Sbjct: 234 LP 235
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 119/272 (43%), Gaps = 27/272 (9%)
Query: 177 FCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV 236
F + + L GH KAVS + + L S S D +++W + G+ I+ G ++
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKL 69
Query: 237 GSLICEGPW-------VFVGMPNVVKAWHIESSAEF-SLDGPVGEVY--SMVVANEMLFA 286
G I + W V +K W + S +L G V+ + + ++ +
Sbjct: 70 G--ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 287 GAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLD 344
G+ D ++ +W + L H+ PV+ + G + S S D R+WD
Sbjct: 128 GSFDESVRIWD-----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 345 TLEAVMTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTH-NEDHG 400
+ + + TL + P+S + + +Y+L+ +LDNT+K+W ++ L+ H NE +
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 242
Query: 401 VLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432
+ A + G ++ D+ V+++ L +
Sbjct: 243 IFANFSVT---GGKWIVSGSEDNLVYIWNLQT 271
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 88/220 (40%), Gaps = 34/220 (15%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ----------SASVINLGA 234
L L+GH V +S+ + SGS D +V++WD TG+ S ++
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL----DGPVGEVYSMVVANEMLFAGAQD 290
+ GSLI + + + W S D P + + A D
Sbjct: 163 D-GSLIVSSSY-----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 291 GNILVWKGIPNTQNPFQLAALLKGHTRPVTCL-----AVGGKRLYSGSMDNTIRVWDLDT 345
+ +W + + GH C+ GGK + SGS DN + +W+L T
Sbjct: 217 NTLKLWD-----YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 346 LEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDN--TIKVW 381
E V L GHTD +S C + + S +L+N TIK++
Sbjct: 272 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 119/272 (43%), Gaps = 27/272 (9%)
Query: 177 FCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV 236
F + + L GH KAVS + + L S S D +++W + G+ I+ G ++
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKL 69
Query: 237 GSLICEGPW-------VFVGMPNVVKAWHIESSAEF-SLDGPVGEVY--SMVVANEMLFA 286
G I + W V +K W + S +L G V+ + + ++ +
Sbjct: 70 G--ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 287 GAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLD 344
G+ D ++ +W + L H+ PV+ + G + S S D R+WD
Sbjct: 128 GSFDESVRIWD-----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 345 TLEAVMTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTH-NEDHG 400
+ + + TL + P+S + + +Y+L+ +LDNT+K+W ++ L+ H NE +
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 242
Query: 401 VLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432
+ A + G ++ D+ V+++ L +
Sbjct: 243 IFANFSVT---GGKWIVSGSEDNLVYIWNLQT 271
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 88/220 (40%), Gaps = 34/220 (15%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ----------SASVINLGA 234
L L+GH V +S+ + SGS D +V++WD TG+ S ++
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL----DGPVGEVYSMVVANEMLFAGAQD 290
+ GSLI + + + W S D P + + A D
Sbjct: 163 D-GSLIVSSSY-----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 291 GNILVWKGIPNTQNPFQLAALLKGHTRPVTCL-----AVGGKRLYSGSMDNTIRVWDLDT 345
+ +W + + GH C+ GGK + SGS DN + +W+L T
Sbjct: 217 NTLKLWD-----YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 346 LEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDN--TIKVW 381
E V L GHTD +S C + + S +L+N TIK++
Sbjct: 272 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLF 311
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 111/274 (40%), Gaps = 69/274 (25%)
Query: 180 EGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSL 239
+GF + + GH VS +++ D + S SRD T+++W+ TG V +
Sbjct: 180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC---------VKTF 230
Query: 240 ICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGI 299
WV + PN DG ++ + + D + VW +
Sbjct: 231 TGHREWVRMVRPN--------------QDGT------------LIASCSNDQTVRVW--V 262
Query: 300 PNTQNPFQLAALLKGHTRPVTCL-------------AVG---------GKRLYSGSMDNT 337
T+ + A L+ H V C+ A G G L SGS D T
Sbjct: 263 VATK---ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 338 IRVWDLDTLEAVMTLNGHTDAPMSLLCWD--QYLLSCSLDNTIKVWIMTEEGNLEVAYTH 395
I++WD+ T +MTL GH + +L +++LSC+ D T++VW + ++ H
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 379
Query: 396 NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429
+H V + L+ P ++ D +V ++E
Sbjct: 380 --EHFVTS---LDFHKTAPYVVTGSVDQTVKVWE 408
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 31/177 (17%)
Query: 260 ESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319
E+ EF+ GP+G Q + W IP + L+ GH PV
Sbjct: 74 EAKEEFTSGGPLG----------------QKRDPKEW--IPRPPEKYALS----GHRSPV 111
Query: 320 TCLAVGG--KRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA--PMSLLCWDQYLLSCSLD 375
T + + S S D TI+VWD +T + TL GHTD+ +S + L SCS D
Sbjct: 112 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD 171
Query: 376 NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432
TIK+W +G + H DH V ++ + P+G+ + + + D ++ ++E+ +
Sbjct: 172 MTIKLWDF--QGFECIRTMHGHDHNVSSVSIM--PNGDHI-VSASRDKTIKMWEVQT 223
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 45/209 (21%)
Query: 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVF 247
L GH+ V+ + + S S D T+++WD TG +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG--------------- 148
Query: 248 VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQ 307
H +S + S D + ++L + + D I +W F+
Sbjct: 149 ----------HTDSVQDISFDH----------SGKLLASCSADMTIKLWDF-----QGFE 183
Query: 308 LAALLKGHTRPVTCLAV--GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD-APMSLLC 364
+ GH V+ +++ G + S S D TI++W++ T V T GH + M
Sbjct: 184 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 365 WDQYLL-SCSLDNTIKVWIM-TEEGNLEV 391
D L+ SCS D T++VW++ T+E E+
Sbjct: 244 QDGTLIASCSNDQTVRVWVVATKECKAEL 272
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 118/267 (44%), Gaps = 27/267 (10%)
Query: 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241
+ + L GH KAVS + + L S S D +++W + G+ I+ G ++G I
Sbjct: 30 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLG--IS 86
Query: 242 EGPW-------VFVGMPNVVKAWHIESSAEF-SLDGPVGEVY--SMVVANEMLFAGAQDG 291
+ W V +K W + S +L G V+ + + ++ +G+ D
Sbjct: 87 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 146
Query: 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV 349
++ +W + L H+ PV+ + G + S S D R+WD + + +
Sbjct: 147 SVRIWD-----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 201
Query: 350 MTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTH-NEDHGVLALG 405
TL + P+S + + +Y+L+ +LDNT+K+W ++ L+ H NE + + A
Sbjct: 202 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 261
Query: 406 GLNDPDGNPVLICSCNDDSVHLYELPS 432
+ G ++ D+ V+++ L +
Sbjct: 262 SVT---GGKWIVSGSEDNLVYIWNLQT 285
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 89/223 (39%), Gaps = 40/223 (17%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ----------SASVINLGA 234
L L+GH V +S+ + SGS D +V++WD TG+ S ++
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 176
Query: 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL----DGPVGEVYSMVVANEMLFAGAQD 290
+ GSLI + + + W S D P + + A D
Sbjct: 177 D-GSLIVSSSY-----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 230
Query: 291 GNILVWKGIPNTQNPFQLAALLK---GHTRPVTCL-----AVGGKRLYSGSMDNTIRVWD 342
+ +W + LK GH C+ GGK + SGS DN + +W+
Sbjct: 231 NTLKLWD--------YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 282
Query: 343 LDTLEAVMTLNGHTDAPMSLLC--WDQYLLSCSLDN--TIKVW 381
L T E V L GHTD +S C + + S +L+N TIK+W
Sbjct: 283 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 117/265 (44%), Gaps = 27/265 (10%)
Query: 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241
+ + L GH KAVS + + L S S D +++W + G+ I+ G ++G I
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLG--IS 91
Query: 242 EGPW-------VFVGMPNVVKAWHIESSAEF-SLDGPVGEVY--SMVVANEMLFAGAQDG 291
+ W V +K W + S +L G V+ + + ++ +G+ D
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 151
Query: 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV 349
++ +W + L H+ PV+ + G + S S D R+WD + + +
Sbjct: 152 SVRIWD-----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206
Query: 350 MTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTH-NEDHGVLALG 405
TL + P+S + + +Y+L+ +LDNT+K+W ++ L+ H NE + + A
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 266
Query: 406 GLNDPDGNPVLICSCNDDSVHLYEL 430
+ G ++ D+ V+++ L
Sbjct: 267 SVT---GGKWIVSGSEDNLVYIWNL 288
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 89/223 (39%), Gaps = 40/223 (17%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ----------SASVINLGA 234
L L+GH V +S+ + SGS D +V++WD TG+ S ++
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 235 EVGSLICEGPWVFVGMPNVVKAWHIES----SAEFSLDGPVGEVYSMVVANEMLFAGAQD 290
+ GSLI V + + W S D P + + A D
Sbjct: 182 D-GSLI-----VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 235
Query: 291 GNILVWKGIPNTQNPFQLAALLK---GHTRPVTCL-----AVGGKRLYSGSMDNTIRVWD 342
+ +W + LK GH C+ GGK + SGS DN + +W+
Sbjct: 236 NTLKLWD--------YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
Query: 343 LDTLEAVMTLNGHTDAPMSLLC--WDQYLLSCSLDN--TIKVW 381
L T E V L GHTD +S C + + S +L+N TIK+W
Sbjct: 288 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 117/265 (44%), Gaps = 27/265 (10%)
Query: 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241
+ + L GH KAVS + + L S S D +++W + G+ I+ G ++G I
Sbjct: 37 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLG--IS 93
Query: 242 EGPW-------VFVGMPNVVKAWHIESSAEF-SLDGPVGEVY--SMVVANEMLFAGAQDG 291
+ W V +K W + S +L G V+ + + ++ +G+ D
Sbjct: 94 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 153
Query: 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV 349
++ +W + L H+ PV+ + G + S S D R+WD + + +
Sbjct: 154 SVRIWD-----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 208
Query: 350 MTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTH-NEDHGVLALG 405
TL + P+S + + +Y+L+ +LDNT+K+W ++ L+ H NE + + A
Sbjct: 209 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 268
Query: 406 GLNDPDGNPVLICSCNDDSVHLYEL 430
+ G ++ D+ V+++ L
Sbjct: 269 SVT---GGKWIVSGSEDNLVYIWNL 290
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 89/223 (39%), Gaps = 40/223 (17%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ----------SASVINLGA 234
L L+GH V +S+ + SGS D +V++WD TG+ S ++
Sbjct: 124 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 183
Query: 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL----DGPVGEVYSMVVANEMLFAGAQD 290
+ GSLI V + + W S D P + + A D
Sbjct: 184 D-GSLI-----VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 237
Query: 291 GNILVWKGIPNTQNPFQLAALLK---GHTRPVTCL-----AVGGKRLYSGSMDNTIRVWD 342
+ +W + LK GH C+ GGK + SGS DN + +W+
Sbjct: 238 NTLKLWD--------YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289
Query: 343 LDTLEAVMTLNGHTDAPMSLLC--WDQYLLSCSLDN--TIKVW 381
L T E V L GHTD +S C + + S +L+N TIK+W
Sbjct: 290 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 118/267 (44%), Gaps = 27/267 (10%)
Query: 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241
+ + L GH KAVS + + L S S D +++W + G+ I+ G ++G I
Sbjct: 14 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLG--IS 70
Query: 242 EGPW-------VFVGMPNVVKAWHIESSAEF-SLDGPVGEVY--SMVVANEMLFAGAQDG 291
+ W V +K W + S +L G V+ + + ++ +G+ D
Sbjct: 71 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 130
Query: 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV 349
++ +W + L H+ PV+ + G + S S D R+WD + + +
Sbjct: 131 SVRIWD-----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 185
Query: 350 MTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTH-NEDHGVLALG 405
TL + P+S + + +Y+L+ +LDNT+K+W ++ L+ H NE + + A
Sbjct: 186 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 245
Query: 406 GLNDPDGNPVLICSCNDDSVHLYELPS 432
+ G ++ D+ V+++ L +
Sbjct: 246 SVT---GGKWIVSGSEDNLVYIWNLQT 269
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 89/223 (39%), Gaps = 40/223 (17%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ----------SASVINLGA 234
L L+GH V +S+ + SGS D +V++WD TG+ S ++
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 160
Query: 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL----DGPVGEVYSMVVANEMLFAGAQD 290
+ GSLI + + + W S D P + + A D
Sbjct: 161 D-GSLIVSSSY-----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 214
Query: 291 GNILVWKGIPNTQNPFQLAALLK---GHTRPVTCL-----AVGGKRLYSGSMDNTIRVWD 342
+ +W + LK GH C+ GGK + SGS DN + +W+
Sbjct: 215 NTLKLWD--------YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 266
Query: 343 LDTLEAVMTLNGHTDAPMSLLC--WDQYLLSCSLDN--TIKVW 381
L T E V L GHTD +S C + + S +L+N TIK+W
Sbjct: 267 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 118/267 (44%), Gaps = 27/267 (10%)
Query: 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241
+ + L GH KAVS + + L S S D +++W + G+ I+ G ++G I
Sbjct: 9 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLG--IS 65
Query: 242 EGPW-------VFVGMPNVVKAWHIESSAEF-SLDGPVGEVY--SMVVANEMLFAGAQDG 291
+ W V +K W + S +L G V+ + + ++ +G+ D
Sbjct: 66 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 125
Query: 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV 349
++ +W + L H+ PV+ + G + S S D R+WD + + +
Sbjct: 126 SVRIWD-----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 180
Query: 350 MTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTH-NEDHGVLALG 405
TL + P+S + + +Y+L+ +LDNT+K+W ++ L+ H NE + + A
Sbjct: 181 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 240
Query: 406 GLNDPDGNPVLICSCNDDSVHLYELPS 432
+ G ++ D+ V+++ L +
Sbjct: 241 SVT---GGKWIVSGSEDNLVYIWNLQT 264
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 88/220 (40%), Gaps = 34/220 (15%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ----------SASVINLGA 234
L L+GH V +S+ + SGS D +V++WD TG+ S ++
Sbjct: 96 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 155
Query: 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL----DGPVGEVYSMVVANEMLFAGAQD 290
+ GSLI + + + W S D P + + A D
Sbjct: 156 D-GSLIVSSSY-----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 209
Query: 291 GNILVWKGIPNTQNPFQLAALLKGHTRPVTCL-----AVGGKRLYSGSMDNTIRVWDLDT 345
+ +W + + GH C+ GGK + SGS DN + +W+L T
Sbjct: 210 NTLKLWD-----YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 264
Query: 346 LEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDN--TIKVW 381
E V L GHTD +S C + + S +L+N TIK+W
Sbjct: 265 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 117/265 (44%), Gaps = 27/265 (10%)
Query: 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241
+ + L GH KAVS + + L S S D +++W + G+ I+ G ++G I
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLG--IS 75
Query: 242 EGPW-------VFVGMPNVVKAWHIESSAEF-SLDGPVGEVY--SMVVANEMLFAGAQDG 291
+ W V +K W + S +L G V+ + + ++ +G+ D
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV 349
++ +W + L H+ PV+ + G + S S D R+WD + + +
Sbjct: 136 SVRIWD-----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 350 MTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTH-NEDHGVLALG 405
TL + P+S + + +Y+L+ +LDNT+K+W ++ L+ H NE + + A
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 250
Query: 406 GLNDPDGNPVLICSCNDDSVHLYEL 430
+ G ++ D+ V+++ L
Sbjct: 251 SVT---GGKWIVSGSEDNLVYIWNL 272
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 89/223 (39%), Gaps = 40/223 (17%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ----------SASVINLGA 234
L L+GH V +S+ + SGS D +V++WD TG+ S ++
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL----DGPVGEVYSMVVANEMLFAGAQD 290
+ GSLI + + + W S D P + + A D
Sbjct: 166 D-GSLIVSSSY-----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 291 GNILVWKGIPNTQNPFQLAALLK---GHTRPVTCL-----AVGGKRLYSGSMDNTIRVWD 342
+ +W + LK GH C+ GGK + SGS DN + +W+
Sbjct: 220 NTLKLWD--------YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 343 LDTLEAVMTLNGHTDAPMSLLC--WDQYLLSCSLDN--TIKVW 381
L T E V L GHTD +S C + + S +L+N TIK+W
Sbjct: 272 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 117/265 (44%), Gaps = 27/265 (10%)
Query: 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241
+ + L GH KAVS + + L S S D +++W + G+ I+ G ++G I
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLG--IS 75
Query: 242 EGPW-------VFVGMPNVVKAWHIESSAEF-SLDGPVGEVY--SMVVANEMLFAGAQDG 291
+ W V +K W + S +L G V+ + + ++ +G+ D
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV 349
++ +W + L H+ PV+ + G + S S D R+WD + + +
Sbjct: 136 SVRIWD-----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 350 MTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTH-NEDHGVLALG 405
TL + P+S + + +Y+L+ +LDNT+K+W ++ L+ H NE + + A
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 250
Query: 406 GLNDPDGNPVLICSCNDDSVHLYEL 430
+ G ++ D+ V+++ L
Sbjct: 251 SVT---GGKWIVSGSEDNLVYIWNL 272
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 89/223 (39%), Gaps = 40/223 (17%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ----------SASVINLGA 234
L L+GH V +S+ + SGS D +V++WD TG+ S ++
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL----DGPVGEVYSMVVANEMLFAGAQD 290
+ GSLI + + + W S D P + + A D
Sbjct: 166 D-GSLIVSSSY-----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 291 GNILVWKGIPNTQNPFQLAALLK---GHTRPVTCL-----AVGGKRLYSGSMDNTIRVWD 342
+ +W + LK GH C+ GGK + SGS DN + +W+
Sbjct: 220 NTLKLWD--------YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 343 LDTLEAVMTLNGHTDAPMSLLC--WDQYLLSCSLDN--TIKVW 381
L T E V L GHTD +S C + + S +L+N TIK+W
Sbjct: 272 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 118/267 (44%), Gaps = 27/267 (10%)
Query: 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241
+ + L GH KAVS + + L S S D +++W + G+ I+ G ++G I
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLG--IS 69
Query: 242 EGPW-------VFVGMPNVVKAWHIESSAEF-SLDGPVGEVY--SMVVANEMLFAGAQDG 291
+ W V +K W + S +L G V+ + + ++ +G+ D
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV 349
++ +W + L H+ PV+ + G + S S D R+WD + + +
Sbjct: 130 SVRIWD-----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 184
Query: 350 MTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTH-NEDHGVLALG 405
TL + P+S + + +Y+L+ +LDNT+K+W ++ L+ H NE + + A
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244
Query: 406 GLNDPDGNPVLICSCNDDSVHLYELPS 432
+ G ++ D+ V+++ L +
Sbjct: 245 SVT---GGKWIVSGSEDNLVYIWNLQT 268
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 89/223 (39%), Gaps = 40/223 (17%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ----------SASVINLGA 234
L L+GH V +S+ + SGS D +V++WD TG+ S ++
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL----DGPVGEVYSMVVANEMLFAGAQD 290
+ GSLI + + + W S D P + + A D
Sbjct: 160 D-GSLIVSSSY-----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 213
Query: 291 GNILVWKGIPNTQNPFQLAALLK---GHTRPVTCL-----AVGGKRLYSGSMDNTIRVWD 342
+ +W + LK GH C+ GGK + SGS DN + +W+
Sbjct: 214 NTLKLWD--------YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Query: 343 LDTLEAVMTLNGHTDAPMSLLC--WDQYLLSCSLDN--TIKVW 381
L T E V L GHTD +S C + + S +L+N TIK+W
Sbjct: 266 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 118/267 (44%), Gaps = 27/267 (10%)
Query: 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241
+ + L GH KAVS + + L S S D +++W + G+ I+ G ++G I
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLG--IS 69
Query: 242 EGPW-------VFVGMPNVVKAWHIESSAEF-SLDGPVGEVY--SMVVANEMLFAGAQDG 291
+ W V +K W + S +L G V+ + + ++ +G+ D
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV 349
++ +W + L H+ PV+ + G + S S D R+WD + + +
Sbjct: 130 SVRIWD-----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 184
Query: 350 MTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTH-NEDHGVLALG 405
TL + P+S + + +Y+L+ +LDNT+K+W ++ L+ H NE + + A
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244
Query: 406 GLNDPDGNPVLICSCNDDSVHLYELPS 432
+ G ++ D+ V+++ L +
Sbjct: 245 SVT---GGKWIVSGSEDNLVYIWNLQT 268
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 89/223 (39%), Gaps = 40/223 (17%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ----------SASVINLGA 234
L L+GH V +S+ + SGS D +V++WD TG+ S ++
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 235 EVGSLICEGPWVFVGMPNVVKAWHIES----SAEFSLDGPVGEVYSMVVANEMLFAGAQD 290
+ GSLI + + + W S D P + + A D
Sbjct: 160 D-GSLIVSSSY-----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 213
Query: 291 GNILVWKGIPNTQNPFQLAALLK---GHTRPVTCL-----AVGGKRLYSGSMDNTIRVWD 342
+ +W + LK GH C+ GGK + SGS DN + +W+
Sbjct: 214 NTLKLWD--------YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Query: 343 LDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDN--TIKVW 381
L T E V L GHTD +S C + + S +L+N TIK+W
Sbjct: 266 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 119/272 (43%), Gaps = 27/272 (9%)
Query: 177 FCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV 236
F + + L GH KAVS + + L + S D +++W + G+ I+ G ++
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTIS-GHKL 69
Query: 237 GSLICEGPW-------VFVGMPNVVKAWHIESSAEF-SLDGPVGEVY--SMVVANEMLFA 286
G I + W V +K W + S +L G V+ + + ++ +
Sbjct: 70 G--ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 287 GAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLD 344
G+ D ++ +W + L H+ PV+ + G + S S D R+WD
Sbjct: 128 GSFDESVRIWD-----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 345 TLEAVMTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTH-NEDHG 400
+ + + TL + P+S + + +Y+L+ +LDNT+K+W ++ L+ H NE +
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 242
Query: 401 VLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432
+ A + G ++ D+ V+++ L +
Sbjct: 243 IFANFSVT---GGKWIVSGSEDNLVYIWNLQT 271
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 88/220 (40%), Gaps = 34/220 (15%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ----------SASVINLGA 234
L L+GH V +S+ + SGS D +V++WD TG+ S ++
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL----DGPVGEVYSMVVANEMLFAGAQD 290
+ GSLI + + + W S D P + + A D
Sbjct: 163 D-GSLIVSSSY-----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 291 GNILVWKGIPNTQNPFQLAALLKGHTRPVTCL-----AVGGKRLYSGSMDNTIRVWDLDT 345
+ +W + + GH C+ GGK + SGS DN + +W+L T
Sbjct: 217 NTLKLWD-----YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 346 LEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDN--TIKVW 381
E V L GHTD +S C + + S +L+N TIK+W
Sbjct: 272 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 118/267 (44%), Gaps = 27/267 (10%)
Query: 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241
+ + L GH KAVS + + L S S D +++W + G+ I+ G ++G I
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLG--IS 75
Query: 242 EGPW-------VFVGMPNVVKAWHIESSAEF-SLDGPVGEVY--SMVVANEMLFAGAQDG 291
+ W V +K W + S +L G V+ + + ++ +G+ D
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV 349
++ +W + L H+ PV+ + G + S S D R+WD + + +
Sbjct: 136 SVRIWD-----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 350 MTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTH-NEDHGVLALG 405
TL + P+S + + +Y+L+ +LDNT+K+W ++ L+ H NE + + A
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 250
Query: 406 GLNDPDGNPVLICSCNDDSVHLYELPS 432
+ G ++ D+ V+++ L +
Sbjct: 251 SVT---GGKWIVSGSEDNLVYIWNLQT 274
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 88/220 (40%), Gaps = 34/220 (15%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ----------SASVINLGA 234
L L+GH V +S+ + SGS D +V++WD TG+ S ++
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL----DGPVGEVYSMVVANEMLFAGAQD 290
+ GSLI + + + W S D P + + A D
Sbjct: 166 D-GSLIVSSSY-----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 291 GNILVWKGIPNTQNPFQLAALLKGHTRPVTCL-----AVGGKRLYSGSMDNTIRVWDLDT 345
+ +W + + GH C+ GGK + SGS DN + +W+L T
Sbjct: 220 NTLKLWD-----YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 274
Query: 346 LEAVMTLNGHTDAPMSLLC--WDQYLLSCSLDN--TIKVW 381
E V L GHTD +S C + + S +L+N TIK+W
Sbjct: 275 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 119/265 (44%), Gaps = 27/265 (10%)
Query: 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241
+ ++ L GH KAVS + + L S S D +++W + G+ I+ G ++G I
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLG--IS 72
Query: 242 EGPW-------VFVGMPNVVKAWHIESSAEF-SLDGPVGEVY--SMVVANEMLFAGAQDG 291
+ W V +K W + S +L G V+ + + ++ +G+ D
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV 349
++ +W + + L L H+ PV+ + G + S S D R+WD + + +
Sbjct: 133 SVRIW----DVKTGMCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 350 MTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTH-NEDHGVLALG 405
TL + P+S + + +Y+L+ +LDN +K+W ++ L+ H NE + + A
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 406 GLNDPDGNPVLICSCNDDSVHLYEL 430
+ G ++ D+ V+++ L
Sbjct: 248 SVT---GGKWIVSGSEDNMVYIWNL 269
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 89/223 (39%), Gaps = 40/223 (17%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG----------QSASVINLGA 234
L L+GH V +S+ + SGS D +V++WD TG S ++
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL----DGPVGEVYSMVVANEMLFAGAQD 290
+ GSLI + + + W S D P + + A D
Sbjct: 163 D-GSLIVSSSY-----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 291 GNILVWKGIPNTQNPFQLAALLK---GHTRPVTCL-----AVGGKRLYSGSMDNTIRVWD 342
++ +W + LK GH C+ GGK + SGS DN + +W+
Sbjct: 217 NDLKLWD--------YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Query: 343 LDTLEAVMTLNGHTDAPMSLLC--WDQYLLSCSLDN--TIKVW 381
L T E V L GHTD +S C + + S +L+N TIK+W
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 118/267 (44%), Gaps = 27/267 (10%)
Query: 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241
+ + L GH KAVS + + L S S D +++W + G+ I+ G ++G I
Sbjct: 18 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLG--IS 74
Query: 242 EGPW-------VFVGMPNVVKAWHIESSAEF-SLDGPVGEVY--SMVVANEMLFAGAQDG 291
+ W V +K W + S +L G V+ + + ++ +G+ D
Sbjct: 75 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 134
Query: 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV 349
++ +W + L H+ PV+ + G + S S D R+WD + + +
Sbjct: 135 SVRIWD-----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 189
Query: 350 MTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTH-NEDHGVLALG 405
TL + P+S + + +Y+L+ +LDNT+K+W ++ L+ H NE + + A
Sbjct: 190 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 249
Query: 406 GLNDPDGNPVLICSCNDDSVHLYELPS 432
+ G ++ D+ V+++ L +
Sbjct: 250 SVT---GGKWIVSGSEDNLVYIWNLQT 273
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 88/220 (40%), Gaps = 34/220 (15%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ----------SASVINLGA 234
L L+GH V +S+ + SGS D +V++WD TG+ S ++
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 164
Query: 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL----DGPVGEVYSMVVANEMLFAGAQD 290
+ GSLI + + + W S D P + + A D
Sbjct: 165 D-GSLIVSSSY-----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 218
Query: 291 GNILVWKGIPNTQNPFQLAALLKGHTRPVTCL-----AVGGKRLYSGSMDNTIRVWDLDT 345
+ +W + + GH C+ GGK + SGS DN + +W+L T
Sbjct: 219 NTLKLWD-----YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 273
Query: 346 LEAVMTLNGHTDAPMSLLC--WDQYLLSCSLDN--TIKVW 381
E V L GHTD +S C + + S +L+N TIK+W
Sbjct: 274 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 118/267 (44%), Gaps = 27/267 (10%)
Query: 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241
+ + L GH KAVS + + L S S D +++W + G+ I+ G ++G I
Sbjct: 12 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLG--IS 68
Query: 242 EGPW-------VFVGMPNVVKAWHIESSAEF-SLDGPVGEVY--SMVVANEMLFAGAQDG 291
+ W V +K W + S +L G V+ + + ++ +G+ D
Sbjct: 69 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV 349
++ +W + L H+ PV+ + G + S S D R+WD + + +
Sbjct: 129 SVRIWD-----VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 183
Query: 350 MTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTH-NEDHGVLALG 405
TL + P+S + + +Y+L+ +LDNT+K+W ++ L+ H NE + + A
Sbjct: 184 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 243
Query: 406 GLNDPDGNPVLICSCNDDSVHLYELPS 432
+ G ++ D+ V+++ L +
Sbjct: 244 SVT---GGKWIVSGSEDNLVYIWNLQT 267
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 88/220 (40%), Gaps = 34/220 (15%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ----------SASVINLGA 234
L L+GH V +S+ + SGS D +V++WD TG+ S ++
Sbjct: 99 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 158
Query: 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL----DGPVGEVYSMVVANEMLFAGAQD 290
+ GSLI + + + W S D P + + A D
Sbjct: 159 D-GSLIVSSSY-----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 212
Query: 291 GNILVWKGIPNTQNPFQLAALLKGHTRPVTCL-----AVGGKRLYSGSMDNTIRVWDLDT 345
+ +W + + GH C+ GGK + SGS DN + +W+L T
Sbjct: 213 NTLKLWD-----YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 267
Query: 346 LEAVMTLNGHTDAPMSLLC--WDQYLLSCSLDN--TIKVW 381
E V L GHTD +S C + + S +L+N TIK+W
Sbjct: 268 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 99/233 (42%), Gaps = 24/233 (10%)
Query: 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR 212
++VC+ G E R W E ++ L+GH++ + + DKL SGS
Sbjct: 127 RSVCFSPDGKFLATGAEDRLIRIWDI-ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 213 DGTVQLWDCHTGQSASVINLGAEVGSLIC---EGPWVFVG-MPNVVKAWHIES------- 261
D TV++WD TGQ + +++ V ++ +G ++ G + V+ W E+
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Query: 262 -SAEFSLDGPVGEVYSMVVAN--EMLFAGAQDGNILVW-------KGIPNTQNPFQLAAL 311
S S G VYS+V + + +G+ D ++ +W K T N
Sbjct: 246 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 305
Query: 312 LKGHTRPVTCLAVGGKRLY--SGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSL 362
GH V +A Y SGS D + WD + ++ L GH ++ +S+
Sbjct: 306 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 22/171 (12%)
Query: 242 EGPWVFVGMPN-VVKAWHIES-SAEFSLDGPVGEVYSM--VVANEMLFAGAQDGNILVWK 297
+G ++ G + +++ W IE+ L G ++YS+ + + L +G+ D + +W
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 193
Query: 298 GIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLN- 353
+ Q L+ VT +AV GK + +GS+D +RVWD +T V L+
Sbjct: 194 -LRTGQCSLTLSI-----EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247
Query: 354 ------GHTDAPMSLLCWD--QYLLSCSLDNTIKVWIMTEEGNLEVAYTHN 396
GH D+ S++ Q ++S SLD ++K+W + N + T N
Sbjct: 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 87/203 (42%), Gaps = 33/203 (16%)
Query: 188 LEGHKKAVSGIALPLRSDKLY--SGSRDGTVQLWDCHTGQSASVINLGAE-----VGSLI 240
EGH V + + + Y +GSRD T+ +W + +SV + G E V
Sbjct: 199 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL--PKESSVPDHGEEHDYPLVFHTP 256
Query: 241 CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIP 300
E P+ FVG+ L G V ++ ++ +G+ D ++VW
Sbjct: 257 EENPY-FVGV----------------LRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQ 299
Query: 301 NTQNPFQLAALLKGHTRPV--TCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA 358
+ +L GHT + T KR S S D TIR+WDL+ E TL GHT
Sbjct: 300 X-----KCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTAL 354
Query: 359 PMSLLCWDQYLLSCSLDNTIKVW 381
L D++L+S + D +I+ W
Sbjct: 355 VGLLRLSDKFLVSAAADGSIRGW 377
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 108/245 (44%), Gaps = 27/245 (11%)
Query: 184 MLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243
L +L GH V + L SGS D TV++WD G V EG
Sbjct: 154 FLLQLSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVF-----------EG 201
Query: 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQ 303
V ++V+ +I+ S D + V+ + + + G + LV+ +
Sbjct: 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTL-HVWKLPKESSVPDHGEEHDYPLVFH--TPEE 258
Query: 304 NPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLL 363
NP+ +L+GH V ++ G + SGS DNT+ VWD+ + + L+GHTD S +
Sbjct: 259 NPY-FVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTI 317
Query: 364 CWD---QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC 420
+D + +S S D TI++W + N E+ YT ++ L L+D L+ +
Sbjct: 318 -YDHERKRCISASXDTTIRIWDLE---NGELXYTLQGHTALVGLLRLSD----KFLVSAA 369
Query: 421 NDDSV 425
D S+
Sbjct: 370 ADGSI 374
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Query: 312 LKGH-TRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSL-LCWDQYL 369
L+GH T +TCL + +G+ D IRV+D + ++ L+GH +L L
Sbjct: 117 LRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 176
Query: 370 LSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429
+S S D T++VW + + V HN L + + ++ D+++H+++
Sbjct: 177 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI---KYIVTGSRDNTLHVWK 233
Query: 430 LP 431
LP
Sbjct: 234 LP 235
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 110/259 (42%), Gaps = 32/259 (12%)
Query: 184 MLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH-------TGQSASVINLG-AE 235
+L L GH +V+G+A + S S D TV+LW+ + TG S+SV + +
Sbjct: 254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP 313
Query: 236 VGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVA--NEMLFAGAQDGNI 293
G I VK W+ +L G V+ + + + + + + D +
Sbjct: 314 DGQTIASAS-----DDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 368
Query: 294 LVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMT 351
+W QL L GH+ V +A G+ + S S D T+++W+ + + + T
Sbjct: 369 KLWN------RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQT 421
Query: 352 LNGHTDA--PMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLND 409
L GH+ + ++ DQ + S S D T+K+W G L T H G
Sbjct: 422 LTGHSSSVWGVAFSPDDQTIASASDDKTVKLW--NRNGQLLQTLT---GHSSSVRGVAFS 476
Query: 410 PDGNPVLICSCNDDSVHLY 428
PDG + S +D +V L+
Sbjct: 477 PDGQTIASAS-DDKTVKLW 494
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 108/259 (41%), Gaps = 32/259 (12%)
Query: 184 MLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH-------TGQSASVINLG-AE 235
+L L GH +V G+A + S S D TV+LW+ + TG S+SV + +
Sbjct: 90 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP 149
Query: 236 VGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVA--NEMLFAGAQDGNI 293
G I VK W+ +L G V+ + + + + + + D +
Sbjct: 150 DGQTIASAS-----DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 204
Query: 294 LVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMT 351
+W QL L GH+ V +A G+ + S S D T+++W+ + + + T
Sbjct: 205 KLWN------RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQT 257
Query: 352 LNGHTDA--PMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLND 409
L GH+ + ++ Q + S S D T+K+W G L T H G
Sbjct: 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLW--NRNGQLLQTLT---GHSSSVWGVAFS 312
Query: 410 PDGNPVLICSCNDDSVHLY 428
PDG + S +D +V L+
Sbjct: 313 PDGQTIASAS-DDKTVKLW 330
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 107/259 (41%), Gaps = 32/259 (12%)
Query: 184 MLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH-------TGQSASVINLG-AE 235
+L L GH +V G+A + S S D TV+LW+ + TG S+SV + +
Sbjct: 49 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 108
Query: 236 VGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVA--NEMLFAGAQDGNI 293
G I VK W+ +L G V+ + + + + + + D +
Sbjct: 109 DGQTIASAS-----DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 163
Query: 294 LVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMT 351
+W QL L GH+ V +A G+ + S S D T+++W+ + + + T
Sbjct: 164 KLWN------RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQT 216
Query: 352 LNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLND 409
L GH+ + + Q + S S D T+K+W G L T H G
Sbjct: 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLW--NRNGQLLQTLT---GHSSSVNGVAFR 271
Query: 410 PDGNPVLICSCNDDSVHLY 428
PDG + S +D +V L+
Sbjct: 272 PDGQTIASAS-DDKTVKLW 289
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 106/256 (41%), Gaps = 32/256 (12%)
Query: 187 KLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH-------TGQSASVINLG-AEVGS 238
+LE H +V G+A + S S D TV+LW+ + TG S+SV + + G
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVA--NEMLFAGAQDGNILVW 296
I VK W+ +L G V + + + + + + D + +W
Sbjct: 71 TIASAS-----DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 125
Query: 297 KGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNG 354
QL L GH+ V +A G+ + S S D T+++W+ + + + TL G
Sbjct: 126 N------RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTG 178
Query: 355 HTDA--PMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDG 412
H+ + ++ Q + S S D T+K+W G L T H G PDG
Sbjct: 179 HSSSVWGVAFSPDGQTIASASDDKTVKLW--NRNGQLLQTLT---GHSSSVRGVAFSPDG 233
Query: 413 NPVLICSCNDDSVHLY 428
+ S +D +V L+
Sbjct: 234 QTIASAS-DDKTVKLW 248
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 24/211 (11%)
Query: 184 MLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH-------TGQSASVINLGAEV 236
+L L GH +V G+A + S S D TV+LW+ + TG S+SV +
Sbjct: 377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP 436
Query: 237 GSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVA--NEMLFAGAQDGNIL 294
VK W+ +L G V + + + + + + D +
Sbjct: 437 DDQTIAS----ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 492
Query: 295 VWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTL 352
+W QL L GH+ V +A G+ + S S D T+++W+ + + + TL
Sbjct: 493 LWN------RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL 545
Query: 353 NGHTDA--PMSLLCWDQYLLSCSLDNTIKVW 381
GH+ + ++ Q + S S D T+K+W
Sbjct: 546 TGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 23/171 (13%)
Query: 184 MLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH-------TGQSASVINLG-AE 235
+L L GH +V G+A + S S D TV+LW+ + TG S+SV + +
Sbjct: 418 LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 477
Query: 236 VGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVA--NEMLFAGAQDGNI 293
G I VK W+ +L G V + + + + + + D +
Sbjct: 478 DGQTIASAS-----DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 532
Query: 294 LVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWD 342
+W QL L GH+ V +A G+ + S S D T+++W+
Sbjct: 533 KLWN------RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 109/262 (41%), Gaps = 58/262 (22%)
Query: 187 KLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPW 245
+L GH+K G++ S L S S D TV LWD IN G + G ++ +
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWD---------INAGPKEGKIV-DAKA 223
Query: 246 VFVGMPNVVK--AWHIESSAEFSLDGPVGEVYSMVVANEMLFAG-AQDGNILVWKGIPNT 302
+F G VV+ AWH+ +E LF A D +++W NT
Sbjct: 224 IFTGHSAVVEDVAWHL--------------------LHESLFGSVADDQKLMIWDTRSNT 263
Query: 303 QNPFQLAALLKGHTRPVTCLAVGGKR---LYSGSMDNTIRVWDLDTLE-AVMTLNGHTDA 358
+ + + L+ HT V CL+ L +GS D T+ +WDL L+ + T H D
Sbjct: 264 TS--KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDE 321
Query: 359 PMSLLCWDQY----LLSCSLDNTIKVWIMT-----------EEGNLEVAYTHNEDHGVLA 403
+ + W + L S D + VW ++ E+G E+ + H ++
Sbjct: 322 -IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKIS 380
Query: 404 LGGLNDPDGNPVLICSCNDDSV 425
N P +ICS ++D++
Sbjct: 381 DFSWN--PNEPWVICSVSEDNI 400
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 108/262 (41%), Gaps = 58/262 (22%)
Query: 187 KLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPW 245
+L GH+K G++ S L S S D TV LWD IN G + G ++ +
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWD---------INAGPKEGKIV-DAKA 223
Query: 246 VFVGMPNVVK--AWHIESSAEFSLDGPVGEVYSMVVANEMLFAG-AQDGNILVWKGIPNT 302
+F G VV+ AWH+ +E LF A D + +W NT
Sbjct: 224 IFTGHSAVVEDVAWHL--------------------LHESLFGSVADDQKLXIWDTRSNT 263
Query: 303 QNPFQLAALLKGHTRPVTCLAVGGKR---LYSGSMDNTIRVWDLDTLE-AVMTLNGHTDA 358
+ + + L+ HT V CL+ L +GS D T+ +WDL L+ + T H D
Sbjct: 264 TS--KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDE 321
Query: 359 PMSLLCWDQY----LLSCSLDNTIKVWIMT-----------EEGNLEVAYTHNEDHGVLA 403
+ + W + L S D + VW ++ E+G E+ + H ++
Sbjct: 322 -IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKIS 380
Query: 404 LGGLNDPDGNPVLICSCNDDSV 425
N P +ICS ++D++
Sbjct: 381 DFSWN--PNEPWVICSVSEDNI 400
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 268 DGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-- 325
+G V ++ + +M+ + ++D I++WK + N L+GH+ V+ + +
Sbjct: 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD 97
Query: 326 GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVW 381
G+ SGS D T+R+WDL T GHT +S+ ++ ++S S D TIK+W
Sbjct: 98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 53/215 (24%)
Query: 180 EGFTMLAKLEGHKKAVSGIAL-PLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS 238
E T+ L+GH V+ IA P D + S SRD T+ +W ++
Sbjct: 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN----------- 74
Query: 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFA--GAQDGNILVW 296
G+P + +L G V +V++++ FA G+ DG + +W
Sbjct: 75 ---------YGIP------------QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113
Query: 297 KGIPNTQNPFQLAALLKGHTRPVTCLAVGG--KRLYSGSMDNTIRVWD-LDTLEAVMTLN 353
T GHT+ V +A +++ SGS D TI++W+ L + +
Sbjct: 114 DLTTGTT-----TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE 168
Query: 354 GHTD-------APMSLLCWDQYLLSCSLDNTIKVW 381
H++ +P S + ++SC D +KVW
Sbjct: 169 SHSEWVSCVRFSPNSS---NPIIVSCGWDKLVKVW 200
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 97/232 (41%), Gaps = 44/232 (18%)
Query: 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDC-----HTGQSASVINLGAEVG 237
T + GH K V +A + ++ SGSRD T++LW+ +T Q S +E
Sbjct: 119 TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES----HSEWV 174
Query: 238 SLICEGP------WVFVGMPNVVKAWHIES-SAEFSLDGPVGEVYSMVVA--NEMLFAGA 288
S + P V G +VK W++ + + + G G + ++ V+ + +G
Sbjct: 175 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG 234
Query: 289 QDGNILVW-----KGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDL 343
+DG ++W K + + AL R C A G +I++WDL
Sbjct: 235 KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATG----------PSIKIWDL 284
Query: 344 ------DTL-EAVMTLNGHTDAPM-SLLCWD---QYLLSCSLDNTIKVWIMT 384
D L + V++ + + P + L W Q L + DN ++VW +T
Sbjct: 285 EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 268 DGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-- 325
+G V ++ + +M+ + ++D I++WK + N L+GH+ V+ + +
Sbjct: 15 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD 74
Query: 326 GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVW 381
G+ SGS D T+R+WDL T GHT +S+ ++ ++S S D TIK+W
Sbjct: 75 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 132
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 53/215 (24%)
Query: 180 EGFTMLAKLEGHKKAVSGIAL-PLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS 238
E T+ L+GH V+ IA P D + S SRD T+ +W ++
Sbjct: 3 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN----------- 51
Query: 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFA--GAQDGNILVW 296
G+P + +L G V +V++++ FA G+ DG + +W
Sbjct: 52 ---------YGIP------------QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 90
Query: 297 KGIPNTQNPFQLAALLKGHTRPVTCLAVGG--KRLYSGSMDNTIRVWD-LDTLEAVMTLN 353
T GHT+ V +A +++ SGS D TI++W+ L + +
Sbjct: 91 DLTTGTT-----TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE 145
Query: 354 GHTD-------APMSLLCWDQYLLSCSLDNTIKVW 381
H++ +P S + ++SC D +KVW
Sbjct: 146 SHSEWVSCVRFSPNSS---NPIIVSCGWDKLVKVW 177
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 44/232 (18%)
Query: 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDC-----HTGQSASVINLGAEVG 237
T + GH K V +A + ++ SGSRD T++LW+ +T Q S +E
Sbjct: 96 TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES----HSEWV 151
Query: 238 SLICEGP------WVFVGMPNVVKAWHIES-SAEFSLDGPVGEVYSMVVANE--MLFAGA 288
S + P V G +VK W++ + + + G G + ++ V+ + + +G
Sbjct: 152 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG 211
Query: 289 QDGNILVW-----KGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDL 343
+DG ++W K + + AL R C A G +I++WDL
Sbjct: 212 KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATG----------PSIKIWDL 261
Query: 344 ------DTL-EAVMTLNGHTDAPM-SLLCWD---QYLLSCSLDNTIKVWIMT 384
D L + V++ + + P + L W Q L + DN ++VW +T
Sbjct: 262 EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 313
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 17/230 (7%)
Query: 175 SWFCGEGFTMLAKLE-----GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV 229
S +C E + + ++L+ GH V G+ + S D T+++W+ S
Sbjct: 860 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSA 919
Query: 230 INLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDG-PVGEVYSMVVANEMLFA-- 286
I L E+ + E + + + N ++ + + +D P +V ++ + +
Sbjct: 920 IVLKQEIDVVFQENETMVLAVDN-IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 978
Query: 287 GAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTL 346
G +DG I + + +PN + F K R + A GK L S S D+ I+VW+ T
Sbjct: 979 GDEDGAIKIIE-LPNNR-VFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTG 1035
Query: 347 EAVMTLNGHTDAPMSL-LCWDQYLLSCSLDNTIKVW-IMTEEGNLEVAYT 394
+ V L H + L D LLS S D T+KVW ++T G +E +T
Sbjct: 1036 DYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVIT--GRIERDFT 1082
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 70/196 (35%), Gaps = 46/196 (23%)
Query: 190 GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVG 249
GHKKAV I L S S D +Q+W+ TG +VF+
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-------------------YVFLQ 1041
Query: 250 MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLA 309
H E+ +F L + + L + + DG + VW I ++
Sbjct: 1042 A-------HQETVKDFRL-----------LQDSRLLSWSFDGTVKVWNVITG-----RIE 1078
Query: 310 ALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD-APMSLLCWD 366
H V A+ + S S D T ++W D L + L GH S D
Sbjct: 1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1138
Query: 367 QYLLSCSLDN-TIKVW 381
LL+ DN I++W
Sbjct: 1139 GILLATGDDNGEIRIW 1154
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 279 VANEMLFAGAQDGNI----LVWKGIPNTQNPFQLAALLKGHTRPV--TCLAVGGKRLYSG 332
V + Q+G+ L W +N +L +++ HT V C + G+R+ S
Sbjct: 576 VYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRL--VVRPHTDAVYHACFSQDGQRIASC 633
Query: 333 SMDNTIRVWDLDTLEAVMTLNGHTDAPM--SLLCWDQYLLSCSLDNTIKVWIMTEEGNLE 390
D T++V+ +T E ++ + H D + + D Y+ +CS D +K+W + +
Sbjct: 634 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW---DSATGK 690
Query: 391 VAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430
+ +T++E + + + +L ND + L++L
Sbjct: 691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 730
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 48/224 (21%)
Query: 166 KGDECRFWHSWFCGEGFTMLAKL--EGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT 223
+GD R + W + L++L H AV ++ S D T+Q++ T
Sbjct: 587 EGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET 646
Query: 224 GQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEM 283
G+ ++++ A ++C FS D +
Sbjct: 647 GEK--LLDIKAHEDEVLC---------------------CAFSSD------------DSY 671
Query: 284 LFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKR----LYSGSMDNTIR 339
+ + D + +W +L H+ V C K L +GS D ++
Sbjct: 672 IATCSADKKVKIWDSATG-----KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726
Query: 340 VWDLDTLEAVMTLNGHTDAP--MSLLCWDQYLLSCSLDNTIKVW 381
+WDL+ E T+ GHT++ D+ L SCS D T+++W
Sbjct: 727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 17/230 (7%)
Query: 175 SWFCGEGFTMLAKLE-----GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV 229
S +C E + + ++L+ GH V G+ + S D T+++W+ S
Sbjct: 867 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSA 926
Query: 230 INLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDG-PVGEVYSMVVANEMLFA-- 286
I L E+ + E + + + N ++ + + +D P +V ++ + +
Sbjct: 927 IVLKQEIDVVFQENETMVLAVDN-IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 985
Query: 287 GAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTL 346
G +DG I + + +PN + F K R + A GK L S S D+ I+VW+ T
Sbjct: 986 GDEDGAIKIIE-LPNNR-VFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTG 1042
Query: 347 EAVMTLNGHTDAPMSL-LCWDQYLLSCSLDNTIKVW-IMTEEGNLEVAYT 394
+ V L H + L D LLS S D T+KVW ++T G +E +T
Sbjct: 1043 DYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVIT--GRIERDFT 1089
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 70/196 (35%), Gaps = 46/196 (23%)
Query: 190 GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVG 249
GHKKAV I L S S D +Q+W+ TG +VF+
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-------------------YVFLQ 1048
Query: 250 MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLA 309
H E+ +F L + + L + + DG + VW I ++
Sbjct: 1049 A-------HQETVKDFRL-----------LQDSRLLSWSFDGTVKVWNVITG-----RIE 1085
Query: 310 ALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD-APMSLLCWD 366
H V A+ + S S D T ++W D L + L GH S D
Sbjct: 1086 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1145
Query: 367 QYLLSCSLDN-TIKVW 381
LL+ DN I++W
Sbjct: 1146 GILLATGDDNGEIRIW 1161
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 279 VANEMLFAGAQDGNI----LVWKGIPNTQNPFQLAALLKGHTRPV--TCLAVGGKRLYSG 332
V + Q+G+ L W +N +L +++ HT V C + G+R+ S
Sbjct: 583 VYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRL--VVRPHTDAVYHACFSQDGQRIASC 640
Query: 333 SMDNTIRVWDLDTLEAVMTLNGHTDAPM--SLLCWDQYLLSCSLDNTIKVWIMTEEGNLE 390
D T++V+ +T E ++ + H D + + D Y+ +CS D +K+W + +
Sbjct: 641 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW---DSATGK 697
Query: 391 VAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430
+ +T++E + + + +L ND + L++L
Sbjct: 698 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 737
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 48/224 (21%)
Query: 166 KGDECRFWHSWFCGEGFTMLAKL--EGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT 223
+GD R + W + L++L H AV ++ S D T+Q++ T
Sbjct: 594 EGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET 653
Query: 224 GQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEM 283
G+ ++++ A ++C FS D +
Sbjct: 654 GEK--LLDIKAHEDEVLC---------------------CAFSSD------------DSY 678
Query: 284 LFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKR----LYSGSMDNTIR 339
+ + D + +W +L H+ V C K L +GS D ++
Sbjct: 679 IATCSADKKVKIWDSATG-----KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 733
Query: 340 VWDLDTLEAVMTLNGHTDAP--MSLLCWDQYLLSCSLDNTIKVW 381
+WDL+ E T+ GHT++ D+ L SCS D T+++W
Sbjct: 734 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 27/141 (19%)
Query: 89 HKKSPPSYNCPKNNVRVSSGSEEGTTHVQN----RENPDRTVPNKSSLDCSTGSDDSGSK 144
H+++ + +++ R+ S S +GT V N R D T + L C+ SD +
Sbjct: 1050 HQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFS 1108
Query: 145 RTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRS 204
T T K + LS L +L+GH V A L
Sbjct: 1109 STSADKTAKIWSFDLLSP----------------------LHELKGHNGCVRCSAFSLDG 1146
Query: 205 DKLYSGSRDGTVQLWDCHTGQ 225
L +G +G +++W+ GQ
Sbjct: 1147 ILLATGDDNGEIRIWNVSDGQ 1167
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 106/262 (40%), Gaps = 58/262 (22%)
Query: 187 KLEGHKKAVSGIAL-PLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPW 245
+L GH+K G++ P S L S S D T+ LWD ++V G + +
Sbjct: 172 RLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDI-----SAVPKEGK-----VVDAKT 221
Query: 246 VFVGMPNVVK--AWHIESSAEFSLDGPVGEVYSMVVANEMLFAG-AQDGNILVWKGIPNT 302
+F G VV+ +WH+ +E LF A D +++W N
Sbjct: 222 IFTGHTAVVEDVSWHL--------------------LHESLFGSVADDQKLMIWDTRSN- 260
Query: 303 QNPFQLAALLKGHTRPVTCLAVGGKR---LYSGSMDNTIRVWDLDTLE-AVMTLNGHTDA 358
N + + + HT V CL+ L +GS D T+ +WDL L+ + + H D
Sbjct: 261 -NTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE 319
Query: 359 PMSLLCWDQY----LLSCSLDNTIKVWIMT-----------EEGNLEVAYTHNEDHGVLA 403
+ + W + L S D + VW ++ E+G E+ + H ++
Sbjct: 320 -IFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKIS 378
Query: 404 LGGLNDPDGNPVLICSCNDDSV 425
N P +ICS ++D++
Sbjct: 379 DFSWN--PNEPWVICSVSEDNI 398
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 82/210 (39%), Gaps = 55/210 (26%)
Query: 187 KLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWV 246
+LEGH VS +AL + S S D +++LW+ GQ C+ +
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQ---------------CQ--YK 104
Query: 247 FVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPF 306
F+G V S FS D N + +G +D + VW N +
Sbjct: 105 FLGHTKDVL------SVAFSPD------------NRQIVSGGRDNALRVW----NVKGEC 142
Query: 307 QLAALLKGHTRPVTCL----AVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD----- 357
HT V+C+ ++ + SG DN ++VWDL T V L GHT+
Sbjct: 143 MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
Query: 358 --APMSLLCWDQYLLSCSLDNTIKVWIMTE 385
+P LC S D ++W +T+
Sbjct: 203 TVSPDGSLC-----ASSDKDGVARLWDLTK 227
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 59/163 (36%), Gaps = 43/163 (26%)
Query: 184 MLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243
++ L+GH V+ + + S +DG +LWD G++ S + GA + IC
Sbjct: 188 LVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQ-ICFS 246
Query: 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQ 303
P N A + I ++ + N
Sbjct: 247 P------------------------------------NRYWMCAATEKGIRIFD-LENKD 269
Query: 304 NPFQLAALLKGHTRPV-TCLAVG----GKRLYSGSMDNTIRVW 341
+LA +G + V C+++ G LYSG DN IRVW
Sbjct: 270 IIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 106/263 (40%), Gaps = 60/263 (22%)
Query: 187 KLEGHKKAVSGIAL-PLRSDKLYSGSRDGTVQLWDCH-TGQSASVINLGAEVGSLICEGP 244
+L GH+K G++ P + L S S D T+ LWD + T + VI+
Sbjct: 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN---------- 225
Query: 245 WVFVGMPNVVK--AWHIESSAEFSLDGPVGEVYSMVVANEMLFAG-AQDGNILVWKGIPN 301
+F G VV+ AWH+ +E LF A D +++W N
Sbjct: 226 -IFTGHTAVVEDVAWHL--------------------LHESLFGSVADDQKLMIWDTRNN 264
Query: 302 TQNPFQLAALLKGHTRPVTCLAVGGKR---LYSGSMDNTIRVWDLDTLE-AVMTLNGHTD 357
N + + + HT V CL+ L +GS D T+ +WDL L+ + + H D
Sbjct: 265 --NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD 322
Query: 358 APMSLLCWDQY----LLSCSLDNTIKVWIMT-----------EEGNLEVAYTHNEDHGVL 402
+ + W + L S D + VW ++ E+G E+ + H +
Sbjct: 323 E-IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 381
Query: 403 ALGGLNDPDGNPVLICSCNDDSV 425
+ N P +ICS ++D++
Sbjct: 382 SDFSWN--PNEPWIICSVSEDNI 402
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 106/263 (40%), Gaps = 60/263 (22%)
Query: 187 KLEGHKKAVSGIAL-PLRSDKLYSGSRDGTVQLWDCH-TGQSASVINLGAEVGSLICEGP 244
+L GH+K G++ P + L S S D T+ LWD + T + VI+
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN---------- 227
Query: 245 WVFVGMPNVVK--AWHIESSAEFSLDGPVGEVYSMVVANEMLFAG-AQDGNILVWKGIPN 301
+F G VV+ AWH+ +E LF A D +++W N
Sbjct: 228 -IFTGHTAVVEDVAWHL--------------------LHESLFGSVADDQKLMIWDTRNN 266
Query: 302 TQNPFQLAALLKGHTRPVTCLAVGGKR---LYSGSMDNTIRVWDLDTLE-AVMTLNGHTD 357
N + + + HT V CL+ L +GS D T+ +WDL L+ + + H D
Sbjct: 267 --NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD 324
Query: 358 APMSLLCWDQY----LLSCSLDNTIKVWIMT-----------EEGNLEVAYTHNEDHGVL 402
+ + W + L S D + VW ++ E+G E+ + H +
Sbjct: 325 E-IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 383
Query: 403 ALGGLNDPDGNPVLICSCNDDSV 425
+ N P +ICS ++D++
Sbjct: 384 SDFSWN--PNEPWIICSVSEDNI 404
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 106/263 (40%), Gaps = 60/263 (22%)
Query: 187 KLEGHKKAVSGIAL-PLRSDKLYSGSRDGTVQLWDCH-TGQSASVINLGAEVGSLICEGP 244
+L GH+K G++ P + L S S D T+ LWD + T + VI+
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN---------- 229
Query: 245 WVFVGMPNVVK--AWHIESSAEFSLDGPVGEVYSMVVANEMLFAG-AQDGNILVWKGIPN 301
+F G VV+ AWH+ +E LF A D +++W N
Sbjct: 230 -IFTGHTAVVEDVAWHL--------------------LHESLFGSVADDQKLMIWDTRNN 268
Query: 302 TQNPFQLAALLKGHTRPVTCLAVGGKR---LYSGSMDNTIRVWDLDTLE-AVMTLNGHTD 357
N + + + HT V CL+ L +GS D T+ +WDL L+ + + H D
Sbjct: 269 --NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD 326
Query: 358 APMSLLCWDQY----LLSCSLDNTIKVWIMT-----------EEGNLEVAYTHNEDHGVL 402
+ + W + L S D + VW ++ E+G E+ + H +
Sbjct: 327 E-IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 385
Query: 403 ALGGLNDPDGNPVLICSCNDDSV 425
+ N P +ICS ++D++
Sbjct: 386 SDFSWN--PNEPWIICSVSEDNI 406
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 8/167 (4%)
Query: 266 SLDGPVGEVYSMVVAN---EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT-- 320
+L+G G V S+ + +L + ++D ++ WK + Q KGH+ V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 321 CLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQ--YLLSCSLDNTI 378
L G S S D T+R+WD+ T E GH MS+ + ++S S D TI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 379 KVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSV 425
KVW + + L HN+ + + D + V I S +D +
Sbjct: 132 KVWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 81/212 (38%), Gaps = 29/212 (13%)
Query: 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS--------ASVINLGAE-VGS 238
+GH V L S S D T++LWD TG++ + V+++ + S
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSM-VVANE-------MLFAGAQD 290
+I G +K W I+ +L G V + VV NE + + D
Sbjct: 121 MIISGS-----RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 291 GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA 348
+ W N FQ+ A GH + L G + S D I +W+L +A
Sbjct: 176 KMVKAWN-----LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 230
Query: 349 VMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKV 380
+ TL+ + ++Y L+ + IKV
Sbjct: 231 MYTLSAQDEVFSLAFSPNRYWLAAATATGIKV 262
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 13/129 (10%)
Query: 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241
F + A GH ++ + + S +DG + LW+ ++ ++ EV SL
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF 245
Query: 242 E--GPWVFVGMPNVVKAWHIESS-------AEFSLDGPVGEVYSMVVA----NEMLFAGA 288
W+ +K + ++ EF+ E +++ +A + LFAG
Sbjct: 246 SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305
Query: 289 QDGNILVWK 297
D I VW+
Sbjct: 306 TDNVIRVWQ 314
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 8/167 (4%)
Query: 266 SLDGPVGEVYSMVVAN---EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT-- 320
+L+G G V S+ + +L + ++D ++ WK + Q KGH+ V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 321 CLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQ--YLLSCSLDNTI 378
L G S S D T+R+WD+ T E GH MS+ + ++S S D TI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 379 KVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSV 425
KVW + + L HN+ + + D + V I S +D +
Sbjct: 132 KVWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 81/212 (38%), Gaps = 29/212 (13%)
Query: 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS--------ASVINLGAE-VGS 238
+GH V L S S D T++LWD TG++ + V+++ + S
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSM-VVANE-------MLFAGAQD 290
+I G +K W I+ +L G V + VV NE + + D
Sbjct: 121 MIISGS-----RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 291 GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA 348
+ W N FQ+ A GH + L G + S D I +W+L +A
Sbjct: 176 KMVKAWN-----LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 230
Query: 349 VMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKV 380
+ TL+ + ++Y L+ + IKV
Sbjct: 231 MYTLSAQDEVFSLAFSPNRYWLAAATATGIKV 262
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 13/129 (10%)
Query: 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241
F + A GH ++ + + S +DG + LW+ ++ ++ EV SL
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF 245
Query: 242 E--GPWVFVGMPNVVKAWHIESS-------AEFSLDGPVGEVYSMVVA----NEMLFAGA 288
W+ +K + ++ EF+ E +++ +A + LFAG
Sbjct: 246 SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305
Query: 289 QDGNILVWK 297
D I VW+
Sbjct: 306 TDNVIRVWQ 314
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 8/167 (4%)
Query: 266 SLDGPVGEVYSMVVAN---EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT-- 320
+L+G G V S+ + +L + ++D ++ WK + Q KGH+ V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 321 CLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQ--YLLSCSLDNTI 378
L G S S D T+R+WD+ T E GH MS+ + ++S S D TI
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 379 KVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSV 425
KVW + + L HN+ + + D + V I S +D +
Sbjct: 126 KVWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 171
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 81/212 (38%), Gaps = 29/212 (13%)
Query: 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS--------ASVINLGAE-VGS 238
+GH V L S S D T++LWD TG++ + V+++ + S
Sbjct: 55 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 114
Query: 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSM-VVANE-------MLFAGAQD 290
+I G +K W I+ +L G V + VV NE + + D
Sbjct: 115 MIISGS-----RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 169
Query: 291 GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA 348
+ W N FQ+ A GH + L G + S D I +W+L +A
Sbjct: 170 KMVKAWN-----LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 224
Query: 349 VMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKV 380
+ TL+ + ++Y L+ + IKV
Sbjct: 225 MYTLSAQDEVFSLAFSPNRYWLAAATATGIKV 256
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 96/226 (42%), Gaps = 38/226 (16%)
Query: 187 KLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH-------------TGQSASVINLG 233
+ GHK V + + ++ + SGSRD T+++W Q V N
Sbjct: 96 RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 155
Query: 234 AEVGSLICEGPWVFVGMPNVVKAWHI-ESSAEFSLDGPVGEVYSMVVANE--MLFAGAQD 290
A+ S+ + G +VKAW++ + E G + ++ + + ++ + +D
Sbjct: 156 ADDDSVTI----ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKD 211
Query: 291 GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNT-IRVWDLDTLEAV 349
G I++W + + + L+A V LA R + + T I+V+ LD V
Sbjct: 212 GEIMLWN-LAAKKAMYTLSA-----QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 265
Query: 350 MTLN----GHTDA--PMSL-LCWD---QYLLSCSLDNTIKVW-IMT 384
L G++ A P ++ L W Q L + DN I+VW +MT
Sbjct: 266 DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 311
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 13/129 (10%)
Query: 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241
F + A GH ++ + + S +DG + LW+ ++ ++ EV SL
Sbjct: 180 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF 239
Query: 242 E--GPWVFVGMPNVVKAWHIESS-------AEFSLDGPVGEVYSMVVA----NEMLFAGA 288
W+ +K + ++ EF+ E +++ +A + LFAG
Sbjct: 240 SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 299
Query: 289 QDGNILVWK 297
D I VW+
Sbjct: 300 TDNVIRVWQ 308
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 8/167 (4%)
Query: 266 SLDGPVGEVYSMVVAN---EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT-- 320
+L+G G V S+ + +L + ++D ++ WK + Q KGH+ V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 321 CLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQ--YLLSCSLDNTI 378
L G S S D T+R+WD+ T E GH MS+ + ++S S D TI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 379 KVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSV 425
KVW + + L HN+ + + D + V I S +D +
Sbjct: 132 KVWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 81/212 (38%), Gaps = 29/212 (13%)
Query: 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS--------ASVINLGAE-VGS 238
+GH V L S S D T++LWD TG++ + V+++ + S
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSM-VVANE-------MLFAGAQD 290
+I G +K W I+ +L G V + VV NE + + D
Sbjct: 121 MIISGS-----RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 291 GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA 348
+ W N FQ+ A GH + L G + S D I +W+L +A
Sbjct: 176 KMVKAWN-----LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 230
Query: 349 VMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKV 380
+ TL+ + ++Y L+ + IKV
Sbjct: 231 MYTLSAQDEVFSLAFSPNRYWLAAATATGIKV 262
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 13/129 (10%)
Query: 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241
F + A GH ++ + + S +DG + LW+ ++ ++ EV SL
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF 245
Query: 242 E--GPWVFVGMPNVVKAWHIESS-------AEFSLDGPVGEVYSMVVA----NEMLFAGA 288
W+ +K + ++ EF+ E +++ +A + LFAG
Sbjct: 246 SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305
Query: 289 QDGNILVWK 297
D I VW+
Sbjct: 306 TDNVIRVWQ 314
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 8/167 (4%)
Query: 266 SLDGPVGEVYSMVVAN---EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT-- 320
+L+G G V S+ + +L + ++D ++ WK + Q KGH+ V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 321 CLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQ--YLLSCSLDNTI 378
L G S S D T+R+WD+ T E GH MS+ + ++S S D TI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 379 KVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSV 425
KVW + + L HN+ + + D + V I S +D +
Sbjct: 132 KVWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 81/212 (38%), Gaps = 29/212 (13%)
Query: 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS--------ASVINLGAE-VGS 238
+GH V L S S D T++LWD TG++ + V+++ + S
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSM-VVANE-------MLFAGAQD 290
+I G +K W I+ +L G V + VV NE + + D
Sbjct: 121 MIISGS-----RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 291 GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA 348
+ W N FQ+ A GH + L G + S D I +W+L +A
Sbjct: 176 KMVKAWN-----LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA 230
Query: 349 VMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKV 380
+ TL+ + ++Y L+ + IKV
Sbjct: 231 MYTLSAQDEVFSLAFSPNRYWLAAATATGIKV 262
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 13/129 (10%)
Query: 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241
F + A GH ++ + + S +DG + LW+ ++ ++ EV SL
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF 245
Query: 242 E--GPWVFVGMPNVVKAWHIESS-------AEFSLDGPVGEVYSMVVA----NEMLFAGA 288
W+ +K + ++ EF+ E +++ +A + LFAG
Sbjct: 246 SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGY 305
Query: 289 QDGNILVWK 297
D I VW+
Sbjct: 306 TDNVIRVWQ 314
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 112/256 (43%), Gaps = 30/256 (11%)
Query: 181 GFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI 240
G+ + A L+GH + V + S K+ S SRDGTV+LW +V+ G + +
Sbjct: 7 GYQLSATLKGHDQDVRDVVAVDDS-KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSV 65
Query: 241 C----EGPWVFVGMPNVVKAWHI-ESSAE---FSLDGPVGEVYSMVVANEMLFAGAQDGN 292
C + +F G + + +S E ++L G G V S+ + ++ +G+ D
Sbjct: 66 CYDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKT 125
Query: 293 ILVWKGIPNTQNPFQLAALLKGHTRPV---TCLAVGGKRLYSGSMDNTIRVWDLDTLEAV 349
VWK L L+ H V ++ + + S D TI++W D + +
Sbjct: 126 AKVWK-------EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVI 176
Query: 350 MTLNG-HTDAPMSLLCWDQ-YLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGL 407
T +G H D L D + +SCS D IK+ + G++ Y +E V + L
Sbjct: 177 KTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKL-VDXHTGDVLRTYEGHESF-VYCIKLL 234
Query: 408 NDPDGNPVLICSCNDD 423
P+G+ I SC +D
Sbjct: 235 --PNGD---IVSCGED 245
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 37/196 (18%)
Query: 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVF 247
L+GH V + + + S S+DG + +W+ T Q I L PWV
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL---------HCPWVM 112
Query: 248 V-------------GMPNVVKAWHIESSAEFSLDGPVGEVYS---------MVVANE--M 283
G+ + +++ S A+ + PV V + V ++
Sbjct: 113 ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172
Query: 284 LFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV---GGKRLYSGSMDNTIRV 340
L G+ D ++W + + GHT V L++ SGS D T+R+
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 341 WDLD-TLEAVMTLNGH 355
WDL T AV T +GH
Sbjct: 233 WDLRITSRAVRTYHGH 248
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 66/176 (37%), Gaps = 42/176 (23%)
Query: 188 LEGHKKAVSGIA-LPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWV 246
L GHK S +P + +L +GS D T LWD TGQ S+ G+E S
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI--FGSEFPS-------- 202
Query: 247 FVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN---EMLFAGAQDGNILVWKGIPNTQ 303
G +V S+ + + M +G+ D + +W + +
Sbjct: 203 ----------------------GHTADVLSLSINSLNANMFISGSCDTTVRLW----DLR 236
Query: 304 NPFQLAALLKGHTRPVTCLAV--GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD 357
+ GH + + G+R +GS D T R++D+ T + N D
Sbjct: 237 ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD 292
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 9/173 (5%)
Query: 266 SLDGPVGEVYSMVVAN---EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT-- 320
+L+G G V S+ + +L + ++D ++ WK + Q KGH+ V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 321 CLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQ--YLLSCSLDNTI 378
L G S S D T+R+WD+ T E GH S+ + ++S S D TI
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 379 KVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC-NDDSVHLYEL 430
KVW + + L HN+ + + D + V I S ND V + L
Sbjct: 132 KVWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNL 183
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 78/207 (37%), Gaps = 19/207 (9%)
Query: 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS-ASVINLGAEVGSLICEGPWV 246
+GH V L S S D T++LWD TG++ + ++V S+ +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKAS 120
Query: 247 FV---GMPNVVKAWHIESSAEFSLDGPVGEVYSM-VVANE-------MLFAGAQDGNILV 295
+ +K W I+ +L G V + VV NE + + D +
Sbjct: 121 XIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 296 WKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN 353
W N FQ+ A GH + L G + S D I +W+L +A TL+
Sbjct: 181 WN-----LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLS 235
Query: 354 GHTDAPMSLLCWDQYLLSCSLDNTIKV 380
+ ++Y L+ + IKV
Sbjct: 236 AQDEVFSLAFSPNRYWLAAATATGIKV 262
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 82/231 (35%), Gaps = 66/231 (28%)
Query: 176 WFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH------------- 222
W G T + GHK V + + ++ + SGSRD T+++W
Sbjct: 92 WDVATGETY-QRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDW 150
Query: 223 TGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHI-ESSAEFSLDGPVGEVYSMVVAN 281
Q V N A+ S+ + G VKAW++ + E G + ++ +
Sbjct: 151 VSQVRVVPNEKADDDSVTI----ISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASP 206
Query: 282 E--MLFAGAQDGNILVWK-----------------GIPNTQNPFQLAAL----------- 311
+ ++ + +DG I +W + + N + LAA
Sbjct: 207 DGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLD 266
Query: 312 -----------LKGHTRPVTCLAVG------GKRLYSGSMDNTIRVWDLDT 345
G+++ AV G+ L++G DN IRVW + T
Sbjct: 267 PQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXT 317
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Query: 283 MLFAGAQDGNILVWKGIPNTQNPF--QLAALLKGHTRPVTCLAVGGKRLY--SGSMDNTI 338
+L +G++D +++WK QN + L GH V+ LA+ + + S S D T+
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 339 RVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN 396
R+WDL T GH S+ ++ +LS + IK+W + E A N
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKEN 160
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 72/180 (40%), Gaps = 27/180 (15%)
Query: 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS-ASVINLGAEVGSLICE---G 243
L GH VS +AL + S S D T++LWD TG + + +EV S+
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 244 PWVFVGMPNVVKAWHIESSAEFSLD--------------GPVGEVYSMVVANEMLFAG-A 288
+ G +K W+I +FS P+ + + V FA
Sbjct: 132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 289 QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL 346
DG + VW NT FQ+ K H V L++ GK + +G D + +WD+ L
Sbjct: 192 WDGRLKVW----NTN--FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 34/226 (15%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244
+A GH V G+ + S D T++LW+ S + L EV + E
Sbjct: 881 VADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENE 940
Query: 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN----------EMLFAGAQDGNIL 294
+ + + ++ + I +G G++ + A + + G ++G I
Sbjct: 941 VMVLAVDHIRRLQLI--------NGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIE 992
Query: 295 VWKGIPNT--QNPFQLAALLKGHTRPV--TCLAVGGKRLYSGSMDNTIRVWDLDTLEAVM 350
+ + + N Q+ FQ H + V K L S S D I+VW+ L+ +
Sbjct: 993 ILELVNNRIFQSRFQ-------HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQ-LDKCI 1044
Query: 351 TLNGHTDAPMSL-LCWDQYLLSCSLDNTIKVW-IMTEEGNLEVAYT 394
L GH + L + LLS S D T+KVW I+T GN E +
Sbjct: 1045 FLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIIT--GNKEKDFV 1088
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 276 SMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALL-KGHTRPV--TCLAVGGKRLYSG 332
S V L A + N +++ N +N L+ L+ + HT V C + G+R+ S
Sbjct: 580 SEVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVVRPHTDAVYHACFSEDGQRIASC 639
Query: 333 SMDNTIRVWDLDTLEAVMTLNGHTDAPM--SLLCWDQYLLSCSLDNTIKVW 381
D T++V+ +T E ++ + H D + + D+++ +CS+D +K+W
Sbjct: 640 GADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 290 DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKR----LYSGSMDNTIRVWDLDT 345
D + +W + +L H+ V C L +GS D +++WDL+
Sbjct: 684 DKKVKIWNSMTG-----ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQ 738
Query: 346 LEAVMTLNGHTDAPMSLLCW----DQYLLSCSLDNTIKVWIMT 384
E T+ GHT++ C D+ L SCS D T+K+W T
Sbjct: 739 KECRNTMFGHTNSVNH--CRFSPDDKLLASCSADGTLKLWDAT 779
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 83/234 (35%), Gaps = 50/234 (21%)
Query: 191 HKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGM 250
HKK V I L S S D +Q+W+ + + G
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKC------------IFLRG------- 1048
Query: 251 PNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIP-NTQNPFQLA 309
H E+ +F L + N L + + DG + VW I N + F
Sbjct: 1049 -------HQETVKDFRL-----------LKNSRLLSWSFDGTVKVWNIITGNKEKDF--- 1087
Query: 310 ALLKGHTRPVTC-LAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD-APMSLLCWDQ 367
+ ++C ++ + S S D T ++W D L + L GH S D
Sbjct: 1088 --VCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDS 1145
Query: 368 YLLSCSLDN-TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLND----PDGNPVL 416
LL+ DN I++W ++ L + +E+ G + D PDG ++
Sbjct: 1146 TLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLI 1199
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 23/184 (12%)
Query: 266 SLDGPVGEVYSMVVA--NEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLA 323
+L+G EV S+ A +L ++D ++ VW+ + ++ ++ ++L HT+ V +
Sbjct: 100 TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE--VDEEDEYECVSVLNSHTQDVKHVV 157
Query: 324 V--GGKRLYSGSMDNTIRVW--DLDTLEAVMTLNGHTDAPMSLLCWD---QYLLSCSLDN 376
+ L S S D+T++++ + D TL GH SL +D Q L SCS D
Sbjct: 158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA-FDPSGQRLASCSDDR 216
Query: 377 TIKVWIMTEEGNLEVAYTHNEDHG---VLALGGLNDPDGNPVLIC--------SCNDDSV 425
T+++W GN + D + L G + + C +C DD++
Sbjct: 217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAI 276
Query: 426 HLYE 429
+++
Sbjct: 277 RVFQ 280
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 43/167 (25%)
Query: 180 EGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG---QSASVINLGAEV 236
+ F + LEGH+ V +A + L + SRD +V +W+ + SV+N +
Sbjct: 93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ- 151
Query: 237 GSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVW 296
+ +VV WH + E+L + + D + ++
Sbjct: 152 ------------DVKHVV--WH--------------------PSQELLASASYDDTVKLY 177
Query: 297 KGIPNTQNPFQLAALLKGHTRPVTCLAV--GGKRLYSGSMDNTIRVW 341
+ ++ + A L+GH V LA G+RL S S D T+R+W
Sbjct: 178 R---EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 67/180 (37%), Gaps = 32/180 (17%)
Query: 180 EGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSL 239
+ + A LEGH+ V +A +L S S D TV++W + G E G +
Sbjct: 182 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLP--------GNEQG-V 232
Query: 240 ICEG---PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVW 296
C G W + + + I A L G L D I V+
Sbjct: 233 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-------------ALATACGDDAIRVF 279
Query: 297 KGIPNT---QNPFQLAA-LLKGHTRPVTCLAVGGKR---LYSGSMDNTIRVWDLDTLEAV 349
+ PN+ Q F L A L + H++ V C+A K L S S D + W E +
Sbjct: 280 QEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 303 QNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA-- 358
Q A L GH RP+T + G L+S S D++ VW E + TL+GHT
Sbjct: 19 QGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIW 78
Query: 359 PMSLLCWDQYLLSCSLDNTIKVW 381
+ + C+ +Y ++ S D +IK+W
Sbjct: 79 SIDVDCFTKYCVTGSADYSIKLW 101
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH 222
+C K W+S GE L L+GH + I + + +GS D +++LWD
Sbjct: 49 SCSKDSSASVWYS-LNGE---RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104
Query: 223 TGQ 225
GQ
Sbjct: 105 NGQ 107
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 282 EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIR 339
++LF+ ++D + VW + + L GHT + + V K +GS D +I+
Sbjct: 45 DLLFSCSKDSSASVWYSLNG-----ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99
Query: 340 VWDLDTLEAVMT 351
+WD+ + V T
Sbjct: 100 LWDVSNGQCVAT 111
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 73/192 (38%), Gaps = 46/192 (23%)
Query: 152 PKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGS 211
P ++SG C K S C + F E H+ V+ + D SGS
Sbjct: 206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAF------ETHESDVNSVRYYPSGDAFASGS 259
Query: 212 RDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPV 271
D T +L+D + ++ + + + G SS +FSL G
Sbjct: 260 DDATCRLYDLRADREVAIYSKES-----------IIFGA----------SSVDFSLSG-- 296
Query: 272 GEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRL 329
+LFAG D I VW + ++ ++L GH V+ L V G
Sbjct: 297 ----------RLLFAGYNDYTINVWDVLKGSR-----VSILFGHENRVSTLRVSPDGTAF 341
Query: 330 YSGSMDNTIRVW 341
SGS D+T+RVW
Sbjct: 342 CSGSWDHTLRVW 353
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 322 LAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSC--SLDNTIK 379
++ G+ L++G D TI VWD+ V L GH + +L C S D+T++
Sbjct: 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLR 351
Query: 380 VW 381
VW
Sbjct: 352 VW 353
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSL-IC 241
T++ + +GH S I + KL++G D TV+ WD G+ + +++ SL C
Sbjct: 174 TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYC 233
Query: 242 -EGPWVFVGMPNV-VKAWHIESSAEFSLDGPVGEVYSMVVA--NEMLFAGAQDGNILVWK 297
G W+ VGM + V+ H+ ++ L V S+ A + + +D + W+
Sbjct: 234 PTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293
Query: 298 GIPNTQNPFQLAALLKGHTRPVTC-LAVGGKRLYSGSMDNTIRVWDL 343
P + FQ K + ++C ++V K + +GS D V+++
Sbjct: 294 -TPYGASIFQ----SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 73/199 (36%), Gaps = 26/199 (13%)
Query: 224 GQSASVINLGAEVGSLICEGP--WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN 281
+ + +N G V ++ P V+ G VK W I S PV ++ + N
Sbjct: 42 ARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKS---PVSQLDCLNRDN 98
Query: 282 EM-----------LFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKR 328
+ L G + + +W T ++ A L LA+ K
Sbjct: 99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP---RIKAELTSSAPACYALAISPDSKV 155
Query: 329 LYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQ--YLLSCSLDNTIKVWIMTEE 386
+S D I VWDL V GHTD + + L + LDNT++ W + E
Sbjct: 156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG 215
Query: 387 GNLEVAYTHNEDHGVLALG 405
L+ H+ + +LG
Sbjct: 216 RQLQ---QHDFTSQIFSLG 231
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 26/170 (15%)
Query: 186 AKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT----------GQSASVINLGAE 235
A+L A +A+ S +S DG + +WD H AS I++ +
Sbjct: 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND 194
Query: 236 VGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSM--VVANEMLFAGAQDGNI 293
G+ + G G+ N V++W + + +++S+ E L G + N+
Sbjct: 195 -GTKLWTG-----GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNV 248
Query: 294 LVWKGIPNTQNPFQLAALLKGHTRPVTCL--AVGGKRLYSGSMDNTIRVW 341
V N + +QL H V L A GK S DN + W
Sbjct: 249 EVLH--VNKPDKYQLHL----HESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 41/208 (19%)
Query: 187 KLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWV 246
+ GH K V +A L + ++ S SRD T++LW+ G+ I+ G E WV
Sbjct: 467 RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT-LGECKYTISEGGE-----GHRDWV 520
Query: 247 FVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPF 306
S FS + + + + D + VW N N
Sbjct: 521 --------------SCVRFSPN----------TLQPTIVSASWDKTVKVW----NLSN-C 551
Query: 307 QLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLC 364
+L + L GHT V+ +AV G SG D + +WDL + + +L ++ + LC
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS--VIHALC 609
Query: 365 W--DQYLLSCSLDNTIKVWIMTEEGNLE 390
+ ++Y L + ++ IK+W + + +E
Sbjct: 610 FSPNRYWLCAATEHGIKIWDLESKSIVE 637
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 66/174 (37%), Gaps = 41/174 (23%)
Query: 187 KLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWV 246
+L GH V + L SGS DG ++LWD G S
Sbjct: 425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR-----------------R 467
Query: 247 FVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPF 306
FVG V S FSLD N + + ++D I +W + + +
Sbjct: 468 FVGHTKDV------LSVAFSLD------------NRQIVSASRDRTIKLWNTLGECK--Y 507
Query: 307 QLAALLKGHTRPVTCLAVGGKRL----YSGSMDNTIRVWDLDTLEAVMTLNGHT 356
++ +GH V+C+ L S S D T++VW+L + TL GHT
Sbjct: 508 TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT 561
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 107/262 (40%), Gaps = 35/262 (13%)
Query: 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP--- 244
LEGH+ V + + S S D ++LWD G+ I+ G + P
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ 135
Query: 245 ----WVFVGMPNVVKAWHIES-SAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGI 299
VG N+ +ES E+SLD + S+ A + DG L I
Sbjct: 136 YLATGTHVGKVNIFG---VESGKKEYSLDTRGKFILSI--------AYSPDGKYLASGAI 184
Query: 300 PNTQNPFQLAA-----LLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTL 352
N F +A L+GH P+ L + L + S D I+++D+ TL
Sbjct: 185 DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL 244
Query: 353 NGHTDAPMSL-LCWDQ-YLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDP 410
+GH +++ C D + +S S D ++KVW + + + H + + G+
Sbjct: 245 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD-----QVWGVK-Y 298
Query: 411 DGNPVLICSCNDDS-VHLYELP 431
+GN I S DD +H+Y+ P
Sbjct: 299 NGNGSKIVSVGDDQEIHIYDCP 320
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 283 MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV--TCLAVGGKRLYSGSMDNTIRV 340
L AG+ ++ W+ + Q + + HT PV C + G ++++ S D T ++
Sbjct: 56 FLIAGSWANDVRCWEVQDSGQT---IPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112
Query: 341 WDLDTLEAVMTLNGHTDAPMSLLCWDQY-----LLSCSLDNTIKVW 381
WDL + +A+ DAP+ + W + +++ S D T+K W
Sbjct: 113 WDLSSNQAIQI--AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 109/291 (37%), Gaps = 46/291 (15%)
Query: 149 RTTPKNVCYHWL-SGNC----VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLR 203
+TT + C W GN V+ E R W+ + +L L H+ + +
Sbjct: 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-----KTGALLNVLNFHRAPIVSVKWNKD 160
Query: 204 SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSA 263
+ S + LW+ +G L GS I ++
Sbjct: 161 GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI--------------------NAE 200
Query: 264 EFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLA 323
S DG +G V ++ + G + G I V++ T L GH P++ L
Sbjct: 201 NHSGDGSLGVDVEWVDDDKFVIPGPK-GAIFVYQITEKTP-----TGKLIGHHGPISVLE 254
Query: 324 VG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIK 379
K L S S D T+R+W + GH+ + +S W D ++SCS+D +++
Sbjct: 255 FNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSA-SWVGDDKVISCSMDGSVR 313
Query: 380 VWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430
+W + + L ++ GV G DG + D V++Y+L
Sbjct: 314 LWSLKQNTLLALSIV----DGVPIFAGRISQDGQKYAVAFM-DGQVNVYDL 359
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 299 IPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT 356
I ++PF L+A T VTCLA G + +G + +R+W+ T + LN H
Sbjct: 91 IAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHR 149
Query: 357 DAPMSLLCWDQ---YLLSCSLDNTIKVW 381
AP+ + W++ +++S ++N +W
Sbjct: 150 -APIVSVKWNKDGTHIISMDVENVTILW 176
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 25/206 (12%)
Query: 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE----VGSLICEG 243
L GH+ V+ IA+ R + S S DGT++LW+C TG + N V S+
Sbjct: 174 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSI---- 229
Query: 244 PWVFVGMPNVVKAWHIESSAEFSLD-GPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNT 302
+FVG + I +S + +L+ G G + + AG G I V + +
Sbjct: 230 -ALFVGTDR--QLHEISTSKKNNLEFGTYG---------KYVIAGHVSGVITV-HNVFSK 276
Query: 303 QNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLE---AVMTLNGHTDAP 359
+ QL + +T +Y+G + + WDL + E +N T
Sbjct: 277 EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPIN 336
Query: 360 MSLLCWDQYLLSCSLDNTIKVWIMTE 385
+S D +IK+ I+++
Sbjct: 337 NVYFAAGALFVSSGFDTSIKLDIISD 362
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 282 EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV--GGKRLYSGSMDNTIR 339
E L + +QD + +W + + NP L GH VT +A+ G+ + S S+D TIR
Sbjct: 149 EALISSSQDMQLKIW-SVKDGSNPRTLI----GHRATVTDIAIIDRGRNVLSASLDGTIR 203
Query: 340 VWDLDTLEAVMTLN 353
+W+ T + T N
Sbjct: 204 LWECGTGTTIHTFN 217
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 287 GAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV--GGKRLYSGSMDNTIRVWDLD 344
G +G+I V N Q A H +T L G+ L S S D +++W +
Sbjct: 112 GTTEGDIKVLDSNFNLQREIDQA-----HVSEITKLKFFPSGEALISSSQDMQLKIWSVK 166
Query: 345 TLEAVMTLNGH--TDAPMSLLCWDQYLLSCSLDNTIKVW 381
TL GH T ++++ + +LS SLD TI++W
Sbjct: 167 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 14/153 (9%)
Query: 283 MLFAGAQDGNILVWKGIPNTQNPFQ--LAALLKGHTRPVTCLAVG--GKRLYSGSMDNTI 338
+L AG+ D + +W + F+ L A+++GH V +A G L + S D ++
Sbjct: 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSV 131
Query: 339 RVWDLD----TLEAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEV 391
+W+ D E + L H+ + + W + L S S D+T+++W + + E
Sbjct: 132 WIWETDESGEEYECISVLQEHS-QDVKHVIWHPSEALLASSSYDDTVRIW-KDYDDDWEC 189
Query: 392 AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDS 424
N G + + +G +CS +DDS
Sbjct: 190 VAVLNGHEGTVWSSDFDKTEG-VFRLCSGSDDS 221
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 88/219 (40%), Gaps = 53/219 (24%)
Query: 180 EGFTMLAKLE--GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV-INLGAEV 236
+ FT++ L+ HKKA+ +A + L +GS D TV +W + ++L A
Sbjct: 44 DDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLA-- 101
Query: 237 GSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVW 296
+ G N VK +S DG L ++D ++ +W
Sbjct: 102 ---------IIEGHENEVKG------VAWSNDGY------------YLATCSRDKSVWIW 134
Query: 297 KGIPNTQNPFQLAALLKGHTRPVTCLAV--GGKRLYSGSMDNTIRVWD--LDTLEAVMTL 352
+ + ++ ++L+ H++ V + L S S D+T+R+W D E V L
Sbjct: 135 E-TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL 193
Query: 353 NGHTDAPMS----------LLCWDQYLLSCSLDNTIKVW 381
NGH S LC S S D+T++VW
Sbjct: 194 NGHEGTVWSSDFDKTEGVFRLC------SGSDDSTVRVW 226
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 25/206 (12%)
Query: 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE----VGSLICEG 243
L GH+ V+ IA+ R + S S DGT++LW+C TG + N V S+
Sbjct: 177 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSI---- 232
Query: 244 PWVFVGMPNVVKAWHIESSAEFSLD-GPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNT 302
+FVG + I +S + +L+ G G + + AG G I V + +
Sbjct: 233 -ALFVGTDR--QLHEISTSKKNNLEFGTYG---------KYVIAGHVSGVITV-HNVFSK 279
Query: 303 QNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLE---AVMTLNGHTDAP 359
+ QL + +T +Y+G + + WDL + E +N T
Sbjct: 280 EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPIN 339
Query: 360 MSLLCWDQYLLSCSLDNTIKVWIMTE 385
+S D +IK+ I+++
Sbjct: 340 NVYFAAGALFVSSGFDTSIKLDIISD 365
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 282 EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV--GGKRLYSGSMDNTIR 339
E L + +QD + +W + + NP L GH VT +A+ G+ + S S+D TIR
Sbjct: 152 EALISSSQDMQLKIW-SVKDGSNPRTLI----GHRATVTDIAIIDRGRNVLSASLDGTIR 206
Query: 340 VWDLDTLEAVMTLN 353
+W+ T + T N
Sbjct: 207 LWECGTGTTIHTFN 220
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 287 GAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV--GGKRLYSGSMDNTIRVWDLD 344
G +G+I V N Q A H +T L G+ L S S D +++W +
Sbjct: 115 GTTEGDIKVLDSNFNLQREIDQA-----HVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169
Query: 345 TLEAVMTLNGH--TDAPMSLLCWDQYLLSCSLDNTIKVW 381
TL GH T ++++ + +LS SLD TI++W
Sbjct: 170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 123/327 (37%), Gaps = 86/327 (26%)
Query: 90 KKSPPSYNCPKN----NVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKR 145
K SP Y C NVR+ ++ TTH+ P + P K D S DS SKR
Sbjct: 66 KTSPSGYYCASGDVHGNVRIWDTTQ--TTHILKTTIPVFSGPVK---DISW---DSESKR 117
Query: 146 TLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIAL-PLRS 204
V RF H + G T L G +A++ + P R
Sbjct: 118 IA----------------AVGEGRERFGHVFLFDTG-TSNGNLTGQARAMNSVDFKPSRP 160
Query: 205 DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAE 264
++ SGS D TV ++ EGP
Sbjct: 161 FRIISGSDDNTVAIF----------------------EGP-------------------P 179
Query: 265 FSLDGPVGEVYSMVVA-----NEMLFAG-AQDGNILVWKGIPNTQNPFQLAALLK--GHT 316
F GE V + + LFA DG I+++ G+ T+ LK H+
Sbjct: 180 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 239
Query: 317 RPVTCL--AVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT---DAPMSLLCWDQYLLS 371
V L + G ++ S S D TI++W++ TL+ T+ T D + ++ Q L+S
Sbjct: 240 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS 299
Query: 372 CSLDNTIKVWIMTEEGNL-EVAYTHNE 397
S + I ++ E G++ +V Y HN+
Sbjct: 300 ISANGFIN-FVNPELGSIDQVRYGHNK 325
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
Query: 272 GEVYSMVVANEMLFAGAQDGNILVWKGIP-NTQNPFQLAAL--LKGHTRPVTCLA--VGG 326
E+ S+ +N F A D + K IP + N F+LA HT V C++
Sbjct: 492 AEITSVAFSNNGAFLVATDQS---RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN 548
Query: 327 KRLYSGSMDNTIRVWDLD--TLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVW 381
RL +GS+DN++ VW+++ + ++ H + ++ + W + ++S D+ IK W
Sbjct: 549 VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 607
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 190 GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI 230
GH KA++ ++ L+S +G + WD TG S V
Sbjct: 322 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF 362
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 16/163 (9%)
Query: 191 HKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC---EGPWVF 247
H V ++L + SG+ D + +LWD G + IC G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 248 VGMPNVV-KAWHIESSAE---FSLDGPVGEVYSMVVAN--EMLFAGAQDGNILVWKGIPN 301
G + + + + + E +S D + + S+ + +L AG D N VW +
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 302 TQNPFQLAALLKGHTRPVTCLAV--GGKRLYSGSMDNTIRVWD 342
+ A +L GH V+CL V G + +GS D+ +++W+
Sbjct: 303 DR-----AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 17/187 (9%)
Query: 252 NVVKAWHIESSAEFSLDGPVGEVYSMV--VANEMLFAGAQDGNILVWKGIPNTQNPFQLA 309
N+ I+ +L G + ++Y+M + +L + +QDG +++W ++ ++
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIW----DSYTTNKVH 91
Query: 310 ALLKGHTRPVTC-LAVGGKRLYSGSMDNTIRVWDLDTLEAVM----TLNGHTD-APMSLL 363
A+ + +TC A G + G +DN +++L T E + L GHT
Sbjct: 92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 151
Query: 364 CWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD 423
D +++ S D T +W + H D L+L PD + +C D
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA----PDTRLFVSGAC-DA 206
Query: 424 SVHLYEL 430
S L+++
Sbjct: 207 SAKLWDV 213
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 16/163 (9%)
Query: 191 HKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC---EGPWVF 247
H V ++L + SG+ D + +LWD G + IC G
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 248 VGMPNVV-KAWHIESSAE---FSLDGPVGEVYSMVVAN--EMLFAGAQDGNILVWKGIPN 301
G + + + + + E +S D + + S+ + +L AG D N VW +
Sbjct: 254 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 313
Query: 302 TQNPFQLAALLKGHTRPVTCLAV--GGKRLYSGSMDNTIRVWD 342
+ A +L GH V+CL V G + +GS D+ +++W+
Sbjct: 314 DR-----AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 17/187 (9%)
Query: 252 NVVKAWHIESSAEFSLDGPVGEVYSMV--VANEMLFAGAQDGNILVWKGIPNTQNPFQLA 309
N+ I+ +L G + ++Y+M + +L + +QDG +++W ++ ++
Sbjct: 47 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW----DSYTTNKVH 102
Query: 310 ALLKGHTRPVTC-LAVGGKRLYSGSMDNTIRVWDLDTLEAVM----TLNGHTD-APMSLL 363
A+ + +TC A G + G +DN +++L T E + L GHT
Sbjct: 103 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 162
Query: 364 CWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD 423
D +++ S D T +W + H D L+L PD + +C D
Sbjct: 163 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA----PDTRLFVSGAC-DA 217
Query: 424 SVHLYEL 430
S L+++
Sbjct: 218 SAKLWDV 224
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 92/257 (35%), Gaps = 62/257 (24%)
Query: 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVF 247
L GH + + S L S S+DG + +WD +T I L WV
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL---------RSSWV- 111
Query: 248 VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQ 307
M A A GN + G+ N + +
Sbjct: 112 -----------------------------------MTCAYAPSGNYVACGGLDNICSIYN 136
Query: 308 LAAL---------LKGHTRPVTCLA-VGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD 357
L L GHT ++C + ++ + S D T +WD++T + T GHT
Sbjct: 137 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 196
Query: 358 APMSL-LCWDQYL-LSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPV 415
MSL L D L +S + D + K+W + E + H D + P+GN
Sbjct: 197 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF----PNGNAF 252
Query: 416 LICSCNDDSVHLYELPS 432
S +D + L++L +
Sbjct: 253 ATGS-DDATCRLFDLRA 268
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 16/163 (9%)
Query: 191 HKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC---EGPWVF 247
H V ++L + SG+ D + +LWD G + IC G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 248 VGMPNVV-KAWHIESSAE---FSLDGPVGEVYSMVVAN--EMLFAGAQDGNILVWKGIPN 301
G + + + + + E +S D + + S+ + +L AG D N VW +
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 302 TQNPFQLAALLKGHTRPVTCLAV--GGKRLYSGSMDNTIRVWD 342
+ A +L GH V+CL V G + +GS D+ +++W+
Sbjct: 303 DR-----AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 17/187 (9%)
Query: 252 NVVKAWHIESSAEFSLDGPVGEVYSMV--VANEMLFAGAQDGNILVWKGIPNTQNPFQLA 309
N+ I+ +L G + ++Y+M + +L + +QDG +++W ++ ++
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW----DSYTTNKVH 91
Query: 310 ALLKGHTRPVTC-LAVGGKRLYSGSMDNTIRVWDLDTLEAVM----TLNGHTD-APMSLL 363
A+ + +TC A G + G +DN +++L T E + L GHT
Sbjct: 92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 151
Query: 364 CWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD 423
D +++ S D T +W + H D L+L PD + +C D
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA----PDTRLFVSGAC-DA 206
Query: 424 SVHLYEL 430
S L+++
Sbjct: 207 SAKLWDV 213
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 92/257 (35%), Gaps = 62/257 (24%)
Query: 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVF 247
L GH + + S L S S+DG + +WD +T I L WV
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL---------RSSWV- 100
Query: 248 VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQ 307
M A A GN + G+ N + +
Sbjct: 101 -----------------------------------MTCAYAPSGNYVACGGLDNICSIYN 125
Query: 308 LAAL---------LKGHTRPVTCLA-VGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD 357
L L GHT ++C + ++ + S D T +WD++T + T GHT
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 358 APMSL-LCWDQYL-LSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPV 415
MSL L D L +S + D + K+W + E + H D + P+GN
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF----PNGNAF 241
Query: 416 LICSCNDDSVHLYELPS 432
S +D + L++L +
Sbjct: 242 ATGS-DDATCRLFDLRA 257
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 16/163 (9%)
Query: 191 HKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC---EGPWVF 247
H V ++L + SG+ D + +LWD G + IC G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 248 VGMPNVV-KAWHIESSAE---FSLDGPVGEVYSMVVAN--EMLFAGAQDGNILVWKGIPN 301
G + + + + + E +S D + + S+ + +L AG D N VW +
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 302 TQNPFQLAALLKGHTRPVTCLAV--GGKRLYSGSMDNTIRVWD 342
+ A +L GH V+CL V G + +GS D+ +++W+
Sbjct: 303 DR-----AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 17/187 (9%)
Query: 252 NVVKAWHIESSAEFSLDGPVGEVYSMV--VANEMLFAGAQDGNILVWKGIPNTQNPFQLA 309
N+ I+ +L G + ++Y+M + +L + +QDG +++W ++ ++
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW----DSYTTNKVH 91
Query: 310 ALLKGHTRPVTC-LAVGGKRLYSGSMDNTIRVWDLDTLEAVM----TLNGHTD-APMSLL 363
A+ + +TC A G + G +DN +++L T E + L GHT
Sbjct: 92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 151
Query: 364 CWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD 423
D +++ S D T +W + H D L+L PD + +C D
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA----PDTRLFVSGAC-DA 206
Query: 424 SVHLYEL 430
S L+++
Sbjct: 207 SAKLWDV 213
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 92/257 (35%), Gaps = 62/257 (24%)
Query: 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVF 247
L GH + + S L S S+DG + +WD +T I L WV
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL---------RSSWV- 100
Query: 248 VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQ 307
M A A GN + G+ N + +
Sbjct: 101 -----------------------------------MTCAYAPSGNYVACGGLDNICSIYN 125
Query: 308 LAAL---------LKGHTRPVTCLA-VGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD 357
L L GHT ++C + ++ + S D T +WD++T + T GHT
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 358 APMSL-LCWDQYL-LSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPV 415
MSL L D L +S + D + K+W + E + H D + P+GN
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF----PNGNAF 241
Query: 416 LICSCNDDSVHLYELPS 432
S +D + L++L +
Sbjct: 242 ATGS-DDATCRLFDLRA 257
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 16/163 (9%)
Query: 191 HKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC---EGPWVF 247
H V ++L + SG+ D + +LWD G + IC G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 248 VGMPNVV-KAWHIESSAE---FSLDGPVGEVYSMVVAN--EMLFAGAQDGNILVWKGIPN 301
G + + + + + E +S D + + S+ + +L AG D N VW +
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 302 TQNPFQLAALLKGHTRPVTCLAV--GGKRLYSGSMDNTIRVWD 342
+ A +L GH V+CL V G + +GS D+ +++W+
Sbjct: 303 DR-----AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 17/187 (9%)
Query: 252 NVVKAWHIESSAEFSLDGPVGEVYSMV--VANEMLFAGAQDGNILVWKGIPNTQNPFQLA 309
N+ I+ +L G + ++Y+M + +L + +QDG +++W ++ ++
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIW----DSYTTNKVH 91
Query: 310 ALLKGHTRPVTC-LAVGGKRLYSGSMDNTIRVWDLDTLEAVM----TLNGHTD-APMSLL 363
A+ + +TC A G + G +DN +++L T E + L GHT
Sbjct: 92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 151
Query: 364 CWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD 423
D +++ S D T +W + H D L+L PD + +C D
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA----PDTRLFVSGAC-DA 206
Query: 424 SVHLYEL 430
S L+++
Sbjct: 207 SAKLWDV 213
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 281 NEMLFAGAQDGNILVWKGIPNTQNPFQL---AALLKGHTRPVTCLA---VGGKRLYSGSM 334
+ ++ +G++D ++VW+ IP+ L L+GHT+ V +A L S
Sbjct: 94 DNVIASGSEDCTVMVWE-IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGX 152
Query: 335 DNTIRVWDLDTLEAVMTL 352
DN I VWD+ T AV+TL
Sbjct: 153 DNVILVWDVGTGAAVLTL 170
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 281 NEMLFAGAQDGNILVWKGIPNTQNPFQL---AALLKGHTRPVTCLA---VGGKRLYSGSM 334
+ ++ +G++D ++VW+ IP+ L L+GHT+ V +A L S
Sbjct: 94 DNVIASGSEDCTVMVWE-IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC 152
Query: 335 DNTIRVWDLDTLEAVMTL 352
DN I VWD+ T AV+TL
Sbjct: 153 DNVILVWDVGTGAAVLTL 170
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 38/217 (17%)
Query: 193 KAVSGIALPLRSDKLYS-------GSRDGTVQLWDCHTGQSASVINLGAE---VGSLICE 242
+++ P+R+ K + GS D +++++ +TG+ V++ A + S+
Sbjct: 49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK--VVDFEAHPDYIRSIAVH 106
Query: 243 --GPWVFVGMPNV-VKAWHIESSAEFSLDGPVGEVYSMVVA----NEMLFA-GAQDGNIL 294
P+V G ++ VK W+ E++ E + M VA + FA G D +
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 295 VWKGIPNTQNPFQLAALLKGHTRPVTCLAV----GGKRLYSGSMDNTIRVWDLDTLEAVM 350
VW +T N L G R V + + + S D TI++WD T V
Sbjct: 167 VWSLGQSTPN----FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Query: 351 TLNGHTDAPMSLLCWDQY------LLSCSLDNTIKVW 381
TL GH MS + + + ++S S D T+K+W
Sbjct: 223 TLEGH----MSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244
+A LEGH VS + SGS DGT+++W+ T + +N+G E I P
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 23/185 (12%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC--- 241
+ E H + IA+ + SGS D TV+LW+ + G E ++C
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE-HFVMCVAF 148
Query: 242 --EGPWVFVG--MPNVVKAWHI-ESSAEFSL----DGPVGEV-YSMVVANEMLFAGAQDG 291
+ P F + VK W + +S+ F+L + V V Y + + + D
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL 208
Query: 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRL---YSGSMDNTIRVWDLDTLEA 348
I +W A L+GH V+ AV L SGS D T+++W+ T +
Sbjct: 209 TIKIWD-----YQTKSCVATLEGHMSNVS-FAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 349 VMTLN 353
TLN
Sbjct: 263 EKTLN 267
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 332 GSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNL 389
GS D IRV++ +T E V+ H D S+ Y+LS S D T+K+W L
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 390 EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430
E + +E H V+ + +P C D +V ++ L
Sbjct: 133 EQTFEGHE-HFVMCVAF--NPKDPSTFASGCLDRTVKVWSL 170
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 38/217 (17%)
Query: 193 KAVSGIALPLRSDKLYS-------GSRDGTVQLWDCHTGQSASVINLGAE---VGSLICE 242
+++ P+R+ K + GS D +++++ +TG+ V++ A + S+
Sbjct: 49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK--VVDFEAHPDYIRSIAVH 106
Query: 243 --GPWVFVGMPNV-VKAWHIESSAEFSLDGPVGEVYSMVVA----NEMLFA-GAQDGNIL 294
P+V G ++ VK W+ E++ E + M VA + FA G D +
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 295 VWKGIPNTQNPFQLAALLKGHTRPVTCLAV----GGKRLYSGSMDNTIRVWDLDTLEAVM 350
VW +T N L G R V + + + S D TI++WD T V
Sbjct: 167 VWSLGQSTPN----FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Query: 351 TLNGHTDAPMSLLCWDQY------LLSCSLDNTIKVW 381
TL GH MS + + + ++S S D T+K+W
Sbjct: 223 TLEGH----MSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244
+A LEGH VS + SGS DGT+++W+ T + +N+G E I P
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 23/185 (12%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC--- 241
+ E H + IA+ + SGS D TV+LW+ + G E ++C
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE-HFVMCVAF 148
Query: 242 --EGPWVFVG--MPNVVKAWHI-ESSAEFSL----DGPVGEV-YSMVVANEMLFAGAQDG 291
+ P F + VK W + +S+ F+L + V V Y + + + D
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL 208
Query: 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRL---YSGSMDNTIRVWDLDTLEA 348
I +W A L+GH V+ AV L SGS D T+++W+ T +
Sbjct: 209 TIKIWD-----YQTKSCVATLEGHMSNVS-FAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 349 VMTLN 353
TLN
Sbjct: 263 EKTLN 267
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 332 GSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNL 389
GS D IRV++ +T E V+ H D S+ Y+LS S D T+K+W L
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 390 EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430
E + +E H V+ + +P C D +V ++ L
Sbjct: 133 EQTFEGHE-HFVMCVAF--NPKDPSTFASGCLDRTVKVWSL 170
>pdb|2RHK|C Chain C, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
pdb|2RHK|D Chain D, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
Length = 72
Score = 37.0 bits (84), Expect = 0.023, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 155 VCYHWLSGNCVKGDECRFWHSW 176
VC HWL G C KGD+C F H +
Sbjct: 18 VCKHWLRGLCKKGDQCEFLHEY 39
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244
+A LEGH VS + SGS DGT+++W+ T + +N+G E I P
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 38/217 (17%)
Query: 193 KAVSGIALPLRSDKLYS-------GSRDGTVQLWDCHTGQSASVINLGAE---VGSLICE 242
+++ P+R+ K + GS D +++++ +TG+ V++ A + S+
Sbjct: 49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK--VVDFEAHPDYIRSIAVH 106
Query: 243 --GPWVFVGMPNV-VKAWHIESSAEFSLDGPVGEVYSMVVA----NEMLFA-GAQDGNIL 294
P+V G ++ VK W+ E++ E + M VA + FA G D +
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 295 VWKGIPNTQNPFQLAALLKGHTRPVTCLAV----GGKRLYSGSMDNTIRVWDLDTLEAVM 350
VW +T N L G R V + + + S D TI++WD T V
Sbjct: 167 VWSLGQSTPN----FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Query: 351 TLNGHTDAPMSLLCWDQY------LLSCSLDNTIKVW 381
TL GH MS + + + ++S S D T+K+W
Sbjct: 223 TLEGH----MSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 332 GSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNL 389
GS D IRV++ +T E V+ H D S+ Y+LS S D T+K+W L
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 390 EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430
E + +E H V+ + +P C D +V ++ L
Sbjct: 133 EQTFEGHE-HFVMCVAF--NPKDPSTFASGCLDRTVKVWSL 170
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 23/185 (12%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC--- 241
+ E H + IA+ + SGS D TV+LW+ + G E ++C
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE-HFVMCVAF 148
Query: 242 --EGPWVFVG--MPNVVKAWHI-ESSAEFSL----DGPVGEV-YSMVVANEMLFAGAQDG 291
+ P F + VK W + +S+ F+L + V V Y + + + D
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL 208
Query: 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRL---YSGSMDNTIRVWDLDTLEA 348
I +W A L+GH V+ AV L SGS D T+++W+ T +
Sbjct: 209 TIKIWD-----YQTKSCVATLEGHMSNVS-FAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 349 VMTLN 353
TLN
Sbjct: 263 EKTLN 267
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 38/217 (17%)
Query: 193 KAVSGIALPLRSDKLYS-------GSRDGTVQLWDCHTGQSASVINLGAE---VGSLICE 242
+++ P+R+ K + GS D +++++ +TG+ V++ A + S+
Sbjct: 49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK--VVDFEAHPDYIRSIAVH 106
Query: 243 --GPWVFVGMPNV-VKAWHIESSAEFSLDGPVGEVYSMVVA----NEMLFA-GAQDGNIL 294
P+V G ++ VK W+ E++ E + M VA + FA G D +
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 295 VWKGIPNTQNPFQLAALLKGHTRPVTCLAV----GGKRLYSGSMDNTIRVWDLDTLEAVM 350
VW +T N L G R V + + + S D TI++WD T V
Sbjct: 167 VWSLGQSTPN----FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Query: 351 TLNGHTDAPMSLLCWDQY------LLSCSLDNTIKVW 381
TL GH MS + + + ++S S D T+K+W
Sbjct: 223 TLEGH----MSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244
+A LEGH VS + SGS DGT+++W+ T + +N+G E I P
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 332 GSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNL 389
GS D IRV++ +T E V+ H D S+ Y+LS S D T+K+W L
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 390 EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430
E + +E H V+ + +P C D +V ++ L
Sbjct: 133 EQTFEGHE-HFVMCVAF--NPKDPSTFASGCLDRTVKVWSL 170
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 75/185 (40%), Gaps = 23/185 (12%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC--- 241
+ E H + IA+ + SGS D TV+LW+ + G E ++C
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE-HFVMCVAF 148
Query: 242 --EGPWVFVG--MPNVVKAWHI-ESSAEFSL----DGPVGEV-YSMVVANEMLFAGAQDG 291
+ P F + VK W + +S+ F+L + V V Y + + + D
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL 208
Query: 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRL---YSGSMDNTIRVWDLDTLEA 348
I +W + A L+GH V+ AV L SGS D T+++W+ T +
Sbjct: 209 TIKIWDYQTKS-----CVATLEGHMSNVS-FAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 349 VMTLN 353
TLN
Sbjct: 263 EKTLN 267
>pdb|2D9N|A Chain A, Solution Structure Of Ccch Type Zinc-Finger Domain 2 In
Cleavage And Polyadenylation Specificity Factor
Length = 77
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 137 GSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFWHSW 176
GS S ++T+ VC HWL G C KGD+C F H +
Sbjct: 1 GSSGSSGEKTV-------VCKHWLRGLCKKGDQCEFLHEY 33
>pdb|4II1|A Chain A, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|B Chain B, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|C Chain C, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|D Chain D, Crystal Structure Of The Zinc Finger Of Zgpat
Length = 167
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 46 AGGRVGGGWPTKKVL--CVYFLEGRCN-RNPCRFAHTESQTL 84
AG RV +PT K L C +FLEG+C + CRF+H + +L
Sbjct: 62 AGVRVLYLYPTHKSLKPCPFFLEGKCRFKENCRFSHGQVVSL 103
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 297 KGIPNTQNPFQLAAL--LKGHTRPVTCLAVGGKR---LYSGSMDNTIRVWDL--DTLEAV 349
+GI NP + + GH + L + L S S D+ +R+W++ DTL A+
Sbjct: 94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI 153
Query: 350 MT-LNGHTDAPMS----LLCWDQYLLSCSLDNTIKVW 381
+ GH D +S LL + ++SC +D+++K+W
Sbjct: 154 FGGVEGHRDEVLSADYDLL--GEKIMSCGMDHSLKLW 188
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 297 KGIPNTQNPFQLAAL--LKGHTRPVTCLAVGGKR---LYSGSMDNTIRVWDL--DTLEAV 349
+GI NP + + GH + L + L S S D+ +R+W++ DTL A+
Sbjct: 93 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI 152
Query: 350 MT-LNGHTDAPMS----LLCWDQYLLSCSLDNTIKVW 381
+ GH D +S LL + ++SC +D+++K+W
Sbjct: 153 FGGVEGHRDEVLSADYDLL--GEKIMSCGMDHSLKLW 187
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 297 KGIPNTQNPFQLAAL--LKGHTRPVTCLAVGGKR---LYSGSMDNTIRVWDL--DTLEAV 349
+GI NP + + GH + L + L S S D+ +R+W++ DTL A+
Sbjct: 93 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI 152
Query: 350 MT-LNGHTDAPMS----LLCWDQYLLSCSLDNTIKVW 381
+ GH D +S LL + ++SC +D+++K+W
Sbjct: 153 FGGVEGHRDEVLSADYDLL--GEKIMSCGMDHSLKLW 187
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 297 KGIPNTQNPFQLAAL--LKGHTRPVTCLAVGGKR---LYSGSMDNTIRVWDL--DTLEAV 349
+GI NP + + GH + L + L S S D+ +R+W++ DTL A+
Sbjct: 89 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI 148
Query: 350 MT-LNGHTDAPMS----LLCWDQYLLSCSLDNTIKVW 381
+ GH D +S LL + ++SC +D+++K+W
Sbjct: 149 FGGVEGHRDEVLSADYDLL--GEKIMSCGMDHSLKLW 183
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 326 GKRLYSGSMDNTIRVWDL--DTLEAVMTLNGHTDAPMSLLCWDQ-----YLLSCSLDNTI 378
GKRL + S D TI+++++ +T + + TL GH + P+ + W L SCS D +
Sbjct: 23 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYDGKV 81
Query: 379 KVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430
+W E G H + + P+L+ + +D V + E
Sbjct: 82 LIW-KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF 132
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 297 KGIPNTQNPFQLAALLK--GHTRPVTCLAVGGKR---LYSGSMDNTIRVWDL--DTLEAV 349
+GI NP + + GH + L + L S S D+ +R+W++ DTL A+
Sbjct: 130 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI 189
Query: 350 MT-LNGHTDAPMS----LLCWDQYLLSCSLDNTIKVW 381
+ GH D +S LL + ++SC +D+++K+W
Sbjct: 190 FGGVEGHRDEVLSADYDLL--GEKIMSCGMDHSLKLW 224
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 84/219 (38%), Gaps = 29/219 (13%)
Query: 159 WLSGNCVKGDECRFWHSWFCGEG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQ 217
W SGN + + W G L ++E + +S +A + L G+ VQ
Sbjct: 124 WSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 183
Query: 218 LWDCHTGQS-ASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESS----AEF---SLDG 269
LWD + ++ + A VGSL W + + ++ HI AE +L G
Sbjct: 184 LWDVQQQKRLRNMTSHSARVGSL----SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG 239
Query: 270 PVGEVYSMVVA--NEMLFAGAQDGNILVWKGIPNTQN--PFQLAALLKGHTRPVT----- 320
EV + A L +G D + VW P P Q +G + V
Sbjct: 240 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 299
Query: 321 --CLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD 357
LA GG G+ D IR+W++ + + ++ H+
Sbjct: 300 SNVLATGG-----GTSDRHIRIWNVCSGACLSAVDAHSQ 333
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 70/180 (38%), Gaps = 34/180 (18%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV------INLGAEVGS 238
+A L GH + V G+ L SG D V +W G+ V + GA
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 239 LICEGPWVFVGMPNV-----------VKAWHIESSAEFSLDGPVGEVYSMVVA---NEML 284
C PW NV ++ W++ S A S +V S++ + E++
Sbjct: 294 AWC--PW----QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELI 347
Query: 285 FA-GAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVW 341
G +++WK P A LKGHT V L + G + S + D T+R+W
Sbjct: 348 SGHGFAQNQLVIWK-YPTMAK----VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 84/219 (38%), Gaps = 29/219 (13%)
Query: 159 WLSGNCVKGDECRFWHSWFCGEG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQ 217
W SGN + + W G L ++E + +S +A + L G+ VQ
Sbjct: 113 WSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 172
Query: 218 LWDCHTGQS-ASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESS----AEF---SLDG 269
LWD + ++ + A VGSL W + + ++ HI AE +L G
Sbjct: 173 LWDVQQQKRLRNMTSHSARVGSL----SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG 228
Query: 270 PVGEVYSMVVA--NEMLFAGAQDGNILVWKGIPNTQN--PFQLAALLKGHTRPVT----- 320
EV + A L +G D + VW P P Q +G + V
Sbjct: 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 288
Query: 321 --CLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD 357
LA GG G+ D IR+W++ + + ++ H+
Sbjct: 289 SNVLATGG-----GTSDRHIRIWNVCSGACLSAVDAHSQ 322
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 70/180 (38%), Gaps = 34/180 (18%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV------INLGAEVGS 238
+A L GH + V G+ L SG D V +W G+ V + GA
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 282
Query: 239 LICEGPWVFVGMPNV-----------VKAWHIESSAEFSLDGPVGEVYSMVVA---NEML 284
C PW NV ++ W++ S A S +V S++ + E++
Sbjct: 283 AWC--PW----QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELI 336
Query: 285 FA-GAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVW 341
G +++WK P A LKGHT V L + G + S + D T+R+W
Sbjct: 337 SGHGFAQNQLVIWK-YPTMAK----VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 326 GKRLYSGSMDNTIRVWDL--DTLEAVMTLNGHTDAPMSLLCWDQ-----YLLSCSLDNTI 378
GKRL + S D TI+++++ +T + + TL GH + P+ + W L SCS D +
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 379 KVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430
+W E G H + + P+L+ + +D V + E
Sbjct: 80 LIW-KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF 130
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 272 GEVYSMVVANEMLFAG-AQDGNILVWKGIPNTQNPFQLAALLKGH--TRPVTCLAVGGKR 328
G ++++ + FA D I VW T Q L K + V +A G R
Sbjct: 254 GGIFALSWLDSQKFATVGADATIRVWD--VTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311
Query: 329 LYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVW 381
+ S S+D T+ ++L E + T++GH +L L+S S D I W
Sbjct: 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV--NPLISGSYDGRIXEW 362
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 77/199 (38%), Gaps = 40/199 (20%)
Query: 185 LAKLEGHKKAVSGIALPLRSDK-LYSGSRDGTVQLWDCHT-------------GQSASVI 230
+A+ H +V + + D L SG +G + +WD + GQS S +
Sbjct: 106 MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV 165
Query: 231 NLGAEVGSLICEGPWVFV----GMPNVVKAWHIESSAE---FSLDGP---VGEVYSMVV- 279
+ EV SL V G N W +++ E S P + + S+V
Sbjct: 166 D---EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW 222
Query: 280 --ANEMLFAGA----QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLA---VGGKRLY 330
N A A D +IL+W + N P Q L +GH + + L L
Sbjct: 223 HPKNSTRVATATGSDNDPSILIWD-LRNANTPLQ--TLNQGHQKGILSLDWCHQDEHLLL 279
Query: 331 SGSMDNTIRVWDLDTLEAV 349
S DNT+ +W+ ++ E +
Sbjct: 280 SSGRDNTVLLWNPESAEQL 298
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 326 GKRLYSGSMDNTIRVWDL--DTLEAVMTLNGHTDAPMSLLCWDQ-----YLLSCSLDNTI 378
GKR+ + S D TI+++++ +T + + TL GH + P+ + W L SCS D +
Sbjct: 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 379 KVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430
+W E G H + + P+L+ + +D V + E
Sbjct: 80 MIW-KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEF 130
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 326 GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLC---WDQYLLSCSLDNTIKVW 381
G + SGS D I+VWDL + + H + D LSCS DN I +W
Sbjct: 139 GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 326 GKRLYSGSMDNTIRVWDL--DTLEAVMTLNGHTDAPMSLLCWDQ-----YLLSCSLDNTI 378
GKRL + S D TI+++++ +T + + TL GH + P+ + W L SCS D +
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 379 KVW 381
+W
Sbjct: 80 LIW 82
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 272 GEVYSMVVANEMLFAG-AQDGNILVWKGIPNTQNPFQLAALLKGH--TRPVTCLAVGGKR 328
G ++++ + FA D I VW T Q L K + V +A G R
Sbjct: 254 GGIFALSWLDSQKFATVGADATIRVWD--VTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311
Query: 329 LYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVW 381
+ S S+D T+ ++L E + T++GH +L L+S S D I W
Sbjct: 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV--NPLISGSYDGRIMEW 362
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 84/219 (38%), Gaps = 29/219 (13%)
Query: 159 WLSGNCVKGDECRFWHSWFCGEG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQ 217
W SGN + + W G L ++E + +S +A + L G+ VQ
Sbjct: 33 WSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 92
Query: 218 LWDCHTGQS-ASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESS----AEF---SLDG 269
LWD + ++ + A VGSL W + + ++ HI AE +L G
Sbjct: 93 LWDVQQQKRLRNMTSHSARVGSL----SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG 148
Query: 270 PVGEVYSMVVA--NEMLFAGAQDGNILVWKGIPNTQN--PFQLAALLKGHTRPVT----- 320
EV + A L +G D + VW P P Q +G + V
Sbjct: 149 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 208
Query: 321 --CLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD 357
LA GG G+ D IR+W++ + + ++ H+
Sbjct: 209 SNVLATGG-----GTSDRHIRIWNVCSGACLSAVDAHSQ 242
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 70/180 (38%), Gaps = 34/180 (18%)
Query: 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV------INLGAEVGS 238
+A L GH + V G+ L SG D V +W G+ V + GA
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 239 LICEGPWVFVGMPNV-----------VKAWHIESSAEFSLDGPVGEVYSMVVA---NEML 284
C PW NV ++ W++ S A S +V S++ + E++
Sbjct: 203 AWC--PW----QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELI 256
Query: 285 FA-GAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVW 341
G +++WK P A LKGHT V L + G + S + D T+R+W
Sbjct: 257 SGHGFAQNQLVIWK-YPTMAK----VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 15/150 (10%)
Query: 242 EGPWVFVGMPN-VVKAWHIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDGNILVWK-G 298
+G ++ VG+ N +V + +ES + ++ G V + +L +G++ G I
Sbjct: 145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVR 204
Query: 299 IPNTQNPFQLAALLKGHTRPVTCLA--VGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT 356
I N Q L+GH+ V LA G +L SG DN +++WD + T H
Sbjct: 205 IANHQ-----IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN 259
Query: 357 DAPMSLLC--WDQYLLSC---SLDNTIKVW 381
A ++ W LL+ ++D I W
Sbjct: 260 AAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 184 MLAKLEGHKKAVSGIALPLRSD--KLYSGSRDGTVQLWDCHT 223
+ L+GH V G+A RSD +L SG D VQ+WD +
Sbjct: 209 QIGTLQGHSSEVCGLAW--RSDGLQLASGGNDNVVQIWDARS 248
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 315 HTRPVTCLAV--GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLC---WDQYL 369
H V L+V G + SG D +++VWDL + + N H+ + D
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 370 LSCSLDNTIKVW 381
LSC D I +W
Sbjct: 198 LSCGEDGRILLW 209
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 326 GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD 357
G+ L S D +R WD+ T E + TLN H D
Sbjct: 313 GETLCSAGWDGKLRFWDVKTKERITTLNMHCD 344
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 314 GHTRPVTCLAV--GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD 357
H+ V L+ G+ L S D +R WD+ T E + TLN H D
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD 334
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 174 HSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLW 219
++ + GE TML +GH K V +LYSGSRD + W
Sbjct: 319 YTVYSGEQITML---KGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
>pdb|1KHX|A Chain A, Crystal Structure Of A Phosphorylated Smad2
Length = 227
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 19/133 (14%)
Query: 140 DSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGH-------K 192
D+GS L TT V H L V E FW C + L + G
Sbjct: 2 DTGSPAELSPTTLSPV-NHSLDLQPVTYSEPAFW----CSIAYYELNQRVGETFHASQPS 56
Query: 193 KAVSGIALPLRSDKLYSG-----SRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVF 247
V G P S++ G +R+ TV++ H G+ + +G EV + +F
Sbjct: 57 LTVDGFTDPSNSERFCLGLLSNVNRNATVEMTRRHIGRGVRLYYIGGEVFAECLSDSAIF 116
Query: 248 VGMPNVVK--AWH 258
V PN + WH
Sbjct: 117 VQSPNCNQRYGWH 129
>pdb|2E5S|A Chain A, Solution Structure Of The Zf-Ccchx2 Domain Of Muscleblind-
Like 2, Isoform 1 [homo Sapiens]
Length = 98
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 143 SKRTLERTTPKNVCYHWLSGNCVKGD-ECRFWH 174
+ + L RT VC + GNC +G+ +CRF H
Sbjct: 10 ATQKLLRTDKLEVCREFQRGNCARGETDCRFAH 42
>pdb|2CQE|A Chain A, Solution Structure Of The Zinc-Finger Domain In Kiaa1064
Protein
Length = 98
Score = 28.5 bits (62), Expect = 7.8, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 157 YHWLSGNCVKGDECRFWHSWFCGEGFTMLAKL 188
YH +GNC+ GD+C F H E +L K+
Sbjct: 42 YH-TTGNCINGDDCMFSHDPLTEETRELLDKM 72
>pdb|3D2Q|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2Q|B Chain B, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2Q|C Chain C, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2Q|D Chain D, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain
pdb|3D2S|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
pdb|3D2S|B Chain B, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
pdb|3D2S|C Chain C, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
pdb|3D2S|D Chain D, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
Domain In Complex With Cgcugu Rna
Length = 70
Score = 28.1 bits (61), Expect = 9.3, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 60 LCVYFLEGRCNR--NPCRFAHTESQTLPVSN 88
+C + G CNR N CRFAH T+ +N
Sbjct: 8 VCREYQRGNCNRGENDCRFAHPADSTMIDTN 38
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 364 CWDQYLLSCSLDNTIKVWIMTE-EGNLEVAYTHNEDHGVLALGGLNDPDGNPVL 416
C D +L + S+D T+K+W + + G Y+ H V A PDG +L
Sbjct: 262 CCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNA--ACFSPDGARLL 313
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 364 CWDQYLLSCSLDNTIKVWIMTE-EGNLEVAYTHNEDHGVLALGGLNDPDGNPVL 416
C D +L + S+D T+K+W + + G Y+ H V A PDG +L
Sbjct: 261 CCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNA--ACFSPDGARLL 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,844,633
Number of Sequences: 62578
Number of extensions: 598761
Number of successful extensions: 2234
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1497
Number of HSP's gapped (non-prelim): 372
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)