Query 014003
Match_columns 432
No_of_seqs 724 out of 4124
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 00:54:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 6.8E-47 1.5E-51 332.4 24.8 317 85-429 110-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-41 2.8E-46 302.8 17.5 276 87-429 172-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 1.5E-39 3.2E-44 286.2 24.4 274 148-432 112-440 (480)
4 KOG0273 Beta-transducin family 100.0 7.8E-37 1.7E-41 275.7 29.1 323 87-431 175-523 (524)
5 KOG0286 G-protein beta subunit 100.0 5.9E-37 1.3E-41 261.3 26.1 281 84-429 49-343 (343)
6 KOG0279 G protein beta subunit 100.0 3.3E-36 7.3E-41 255.2 26.1 290 84-431 9-313 (315)
7 KOG0272 U4/U6 small nuclear ri 100.0 5.6E-38 1.2E-42 279.7 14.7 253 59-382 197-458 (459)
8 KOG0315 G-protein beta subunit 100.0 1.6E-35 3.4E-40 247.2 26.2 286 101-404 9-308 (311)
9 KOG0281 Beta-TrCP (transducin 100.0 5E-37 1.1E-41 267.2 14.3 266 151-431 197-477 (499)
10 KOG0319 WD40-repeat-containing 100.0 9.4E-36 2E-40 282.0 21.4 324 87-432 101-578 (775)
11 KOG0645 WD40 repeat protein [G 100.0 8.7E-35 1.9E-39 245.6 24.6 291 84-431 8-311 (312)
12 KOG0293 WD40 repeat-containing 100.0 2.4E-35 5.1E-40 262.1 20.4 292 67-431 205-513 (519)
13 KOG0284 Polyadenylation factor 100.0 3.8E-36 8.3E-41 266.8 13.7 295 62-429 73-378 (464)
14 KOG0263 Transcription initiati 100.0 5.2E-35 1.1E-39 279.6 21.8 266 89-431 377-649 (707)
15 KOG0285 Pleiotropic regulator 100.0 5.2E-35 1.1E-39 255.6 19.5 283 85-429 146-437 (460)
16 KOG0274 Cdc4 and related F-box 100.0 9.3E-34 2E-38 276.2 30.0 271 150-432 207-483 (537)
17 KOG0295 WD40 repeat-containing 100.0 9.2E-35 2E-39 254.7 19.2 282 85-430 103-405 (406)
18 KOG0296 Angio-associated migra 100.0 3E-34 6.5E-39 251.6 22.1 303 58-431 85-398 (399)
19 KOG0265 U5 snRNP-specific prot 100.0 1.7E-33 3.7E-38 241.0 25.3 281 81-430 38-337 (338)
20 PLN00181 protein SPA1-RELATED; 100.0 8.2E-33 1.8E-37 289.3 35.1 292 84-430 477-792 (793)
21 KOG0291 WD40-repeat-containing 100.0 6.1E-32 1.3E-36 256.6 35.6 320 85-431 140-550 (893)
22 KOG0281 Beta-TrCP (transducin 100.0 1.2E-34 2.6E-39 252.4 13.2 291 59-389 175-482 (499)
23 KOG0318 WD40 repeat stress pro 100.0 2.5E-32 5.5E-37 249.7 28.7 317 87-431 232-602 (603)
24 KOG0318 WD40 repeat stress pro 100.0 2.6E-31 5.6E-36 243.1 35.3 322 85-431 142-560 (603)
25 KOG0315 G-protein beta subunit 100.0 8.2E-32 1.8E-36 225.0 28.9 260 162-432 11-289 (311)
26 KOG0266 WD40 repeat-containing 100.0 2.7E-32 5.8E-37 266.5 28.2 287 85-431 153-454 (456)
27 KOG0283 WD40 repeat-containing 100.0 3E-33 6.5E-38 269.7 20.4 294 73-384 249-576 (712)
28 KOG0319 WD40-repeat-containing 100.0 5.5E-32 1.2E-36 256.5 26.2 348 58-429 213-617 (775)
29 cd00200 WD40 WD40 domain, foun 100.0 1.9E-31 4.2E-36 244.6 28.7 279 84-429 3-289 (289)
30 KOG0282 mRNA splicing factor [ 100.0 6.5E-33 1.4E-37 251.4 16.8 280 85-429 209-503 (503)
31 KOG0316 Conserved WD40 repeat- 100.0 4.7E-32 1E-36 224.7 20.1 280 85-429 12-297 (307)
32 KOG0286 G-protein beta subunit 100.0 9.6E-31 2.1E-35 223.4 28.1 238 183-430 46-302 (343)
33 KOG0291 WD40-repeat-containing 100.0 1.4E-30 3.1E-35 247.3 31.8 318 89-430 95-507 (893)
34 KOG0263 Transcription initiati 100.0 1.8E-32 3.8E-37 262.3 19.0 201 85-387 446-652 (707)
35 KOG0273 Beta-transducin family 100.0 2.5E-30 5.4E-35 233.8 25.5 277 145-432 173-483 (524)
36 KOG0285 Pleiotropic regulator 100.0 1.3E-30 2.7E-35 228.2 21.2 242 141-432 141-390 (460)
37 KOG0316 Conserved WD40 repeat- 100.0 3.5E-30 7.7E-35 213.6 22.2 241 183-431 8-257 (307)
38 KOG1407 WD40 repeat protein [F 100.0 4.9E-30 1.1E-34 215.9 23.1 280 84-432 14-312 (313)
39 KOG0279 G protein beta subunit 100.0 9.7E-30 2.1E-34 216.0 24.6 222 161-432 28-263 (315)
40 KOG0306 WD40-repeat-containing 100.0 3.8E-30 8.2E-35 244.3 24.1 291 84-430 367-663 (888)
41 KOG0276 Vesicle coat complex C 100.0 3.9E-30 8.3E-35 239.7 22.8 278 85-427 8-295 (794)
42 KOG0313 Microtubule binding pr 100.0 1.9E-29 4E-34 222.6 23.1 273 88-384 103-418 (423)
43 KOG0643 Translation initiation 100.0 8.5E-30 1.9E-34 215.0 19.9 278 84-431 4-317 (327)
44 KOG0274 Cdc4 and related F-box 100.0 3E-29 6.6E-34 244.7 26.6 280 89-395 207-493 (537)
45 KOG0295 WD40 repeat-containing 100.0 3.6E-30 7.7E-35 226.0 17.4 232 153-432 112-365 (406)
46 KOG0276 Vesicle coat complex C 100.0 1.2E-29 2.5E-34 236.5 21.6 233 153-432 17-258 (794)
47 KOG0288 WD40 repeat protein Ti 100.0 8.3E-30 1.8E-34 227.0 16.3 276 85-381 170-458 (459)
48 KOG0266 WD40 repeat-containing 100.0 3.1E-28 6.8E-33 237.9 29.1 233 156-432 166-410 (456)
49 KOG0292 Vesicle coat complex C 100.0 1.8E-28 4E-33 236.5 24.6 283 88-431 7-321 (1202)
50 KOG0313 Microtubule binding pr 100.0 8.5E-28 1.8E-32 212.1 25.1 256 161-430 115-417 (423)
51 KOG0284 Polyadenylation factor 100.0 1.5E-29 3.3E-34 225.0 12.2 232 153-431 100-337 (464)
52 KOG0265 U5 snRNP-specific prot 100.0 6.2E-28 1.3E-32 207.0 21.5 243 183-432 38-297 (338)
53 KOG0301 Phospholipase A2-activ 100.0 5.2E-28 1.1E-32 228.2 22.7 275 85-431 9-288 (745)
54 KOG0278 Serine/threonine kinas 100.0 6.5E-29 1.4E-33 207.8 14.6 274 86-431 10-297 (334)
55 PTZ00421 coronin; Provisional 100.0 9.4E-27 2E-31 226.9 31.3 272 74-432 4-291 (493)
56 KOG0296 Angio-associated migra 100.0 1.8E-27 3.8E-32 209.2 22.6 278 83-432 57-357 (399)
57 KOG0278 Serine/threonine kinas 100.0 9.7E-29 2.1E-33 206.8 13.5 241 85-348 54-301 (334)
58 KOG0292 Vesicle coat complex C 100.0 1.7E-27 3.6E-32 230.0 22.8 272 85-387 46-324 (1202)
59 KOG0645 WD40 repeat protein [G 100.0 5.1E-26 1.1E-30 192.7 28.4 229 154-430 19-260 (312)
60 PTZ00420 coronin; Provisional 100.0 1E-25 2.2E-30 220.8 34.9 235 153-431 39-293 (568)
61 KOG0268 Sof1-like rRNA process 100.0 4.7E-28 1E-32 212.5 16.4 273 85-430 61-344 (433)
62 KOG0277 Peroxisomal targeting 100.0 5.7E-28 1.2E-32 202.7 15.6 222 162-429 74-307 (311)
63 KOG1446 Histone H3 (Lys4) meth 100.0 5.3E-26 1.2E-30 196.9 27.9 284 82-429 6-301 (311)
64 KOG0300 WD40 repeat-containing 100.0 1.8E-27 4E-32 205.5 18.6 287 84-431 142-476 (481)
65 PLN00181 protein SPA1-RELATED; 100.0 9E-26 1.9E-30 236.4 34.7 250 170-431 457-738 (793)
66 KOG0306 WD40-repeat-containing 100.0 3.2E-26 6.9E-31 217.8 27.4 238 187-431 368-622 (888)
67 KOG0647 mRNA export protein (c 100.0 2.6E-26 5.7E-31 197.2 23.3 269 89-422 26-315 (347)
68 KOG0308 Conserved WD40 repeat- 100.0 3.4E-27 7.5E-32 221.2 18.4 287 95-431 29-327 (735)
69 KOG0640 mRNA cleavage stimulat 100.0 7.6E-27 1.7E-31 201.1 18.8 293 85-429 107-424 (430)
70 cd00200 WD40 WD40 domain, foun 99.9 3.3E-25 7.1E-30 203.1 30.1 237 185-431 2-249 (289)
71 KOG0275 Conserved WD40 repeat- 99.9 2.4E-27 5.2E-32 205.3 13.1 280 87-382 210-507 (508)
72 KOG1332 Vesicle coat complex C 99.9 1.3E-26 2.8E-31 193.5 16.4 246 87-429 8-284 (299)
73 KOG0299 U3 snoRNP-associated p 99.9 6.8E-26 1.5E-30 204.8 21.1 291 85-425 137-450 (479)
74 KOG0305 Anaphase promoting com 99.9 3.2E-25 6.9E-30 209.1 26.5 262 157-430 183-460 (484)
75 KOG0277 Peroxisomal targeting 99.9 6.3E-27 1.4E-31 196.4 13.3 234 90-383 60-308 (311)
76 KOG0282 mRNA splicing factor [ 99.9 7.3E-27 1.6E-31 212.2 14.7 242 183-432 205-463 (503)
77 KOG0294 WD40 repeat-containing 99.9 1.9E-25 4.1E-30 193.1 22.1 238 82-346 35-283 (362)
78 KOG0293 WD40 repeat-containing 99.9 4.3E-26 9.4E-31 203.3 17.5 262 55-385 242-514 (519)
79 KOG0283 WD40 repeat-containing 99.9 2.7E-25 5.8E-30 215.0 23.8 240 183-431 257-576 (712)
80 PTZ00421 coronin; Provisional 99.9 4.5E-25 9.7E-30 215.2 25.5 227 84-405 69-312 (493)
81 KOG1408 WD40 repeat protein [F 99.9 9.2E-25 2E-29 206.7 25.6 325 99-432 267-714 (1080)
82 KOG0308 Conserved WD40 repeat- 99.9 5.9E-26 1.3E-30 212.9 17.0 230 161-432 37-286 (735)
83 KOG0973 Histone transcription 99.9 1.8E-24 3.8E-29 214.4 25.5 294 84-431 6-355 (942)
84 KOG0641 WD40 repeat protein [G 99.9 2.4E-23 5.2E-28 172.1 27.9 288 89-431 31-349 (350)
85 KOG0772 Uncharacterized conser 99.9 8.7E-25 1.9E-29 200.0 20.8 294 83-428 160-484 (641)
86 KOG0264 Nucleosome remodeling 99.9 1.3E-24 2.9E-29 196.4 21.1 235 163-431 139-404 (422)
87 KOG0288 WD40 repeat protein Ti 99.9 3.3E-25 7.1E-30 197.8 16.7 267 154-429 180-459 (459)
88 KOG0275 Conserved WD40 repeat- 99.9 2.3E-25 5E-30 193.0 15.3 242 145-431 209-467 (508)
89 KOG0289 mRNA splicing factor [ 99.9 9.6E-24 2.1E-28 189.5 25.0 268 153-431 221-506 (506)
90 KOG0305 Anaphase promoting com 99.9 9.6E-25 2.1E-29 205.9 19.6 255 73-388 197-465 (484)
91 PTZ00420 coronin; Provisional 99.9 8.9E-24 1.9E-28 207.1 26.5 210 83-387 67-296 (568)
92 KOG1446 Histone H3 (Lys4) meth 99.9 9.9E-23 2.1E-27 176.7 28.9 243 183-432 5-263 (311)
93 KOG1036 Mitotic spindle checkp 99.9 9.5E-24 2E-28 182.2 21.1 262 90-374 13-294 (323)
94 KOG1036 Mitotic spindle checkp 99.9 3.4E-23 7.3E-28 178.8 23.9 256 154-420 18-293 (323)
95 KOG0294 WD40 repeat-containing 99.9 3.8E-23 8.3E-28 178.8 23.5 235 148-431 40-281 (362)
96 KOG0310 Conserved WD40 repeat- 99.9 5.9E-24 1.3E-28 193.7 19.4 270 91-428 27-306 (487)
97 KOG0300 WD40 repeat-containing 99.9 7.5E-24 1.6E-28 183.2 18.9 254 161-431 160-428 (481)
98 KOG1539 WD repeat protein [Gen 99.9 2E-22 4.3E-27 194.2 29.6 265 162-432 173-607 (910)
99 KOG2096 WD40 repeat protein [G 99.9 4.5E-23 9.7E-28 178.6 21.3 297 74-429 71-400 (420)
100 KOG0639 Transducin-like enhanc 99.9 9.9E-24 2.1E-28 192.5 17.5 276 87-383 416-703 (705)
101 KOG1407 WD40 repeat protein [F 99.9 8.3E-23 1.8E-27 172.4 21.3 235 186-431 14-261 (313)
102 KOG0299 U3 snoRNP-associated p 99.9 5.8E-23 1.3E-27 185.9 21.7 244 145-432 136-411 (479)
103 KOG0301 Phospholipase A2-activ 99.9 4.7E-23 1E-27 194.9 21.4 233 182-430 4-248 (745)
104 KOG2445 Nuclear pore complex c 99.9 1.8E-22 4E-27 174.1 19.9 256 86-385 9-319 (361)
105 KOG0310 Conserved WD40 repeat- 99.9 1.5E-22 3.2E-27 184.6 20.3 238 84-384 62-309 (487)
106 KOG0289 mRNA splicing factor [ 99.9 7.3E-22 1.6E-26 177.5 24.4 269 92-383 221-505 (506)
107 KOG0270 WD40 repeat-containing 99.9 1.6E-22 3.4E-27 182.4 19.1 226 163-432 194-450 (463)
108 KOG4283 Transcription-coupled 99.9 4.3E-22 9.3E-27 170.8 20.6 293 88-430 41-364 (397)
109 KOG0973 Histone transcription 99.9 2.4E-22 5.3E-27 199.4 20.2 264 85-386 64-357 (942)
110 KOG2106 Uncharacterized conser 99.9 6.3E-20 1.4E-24 168.0 34.1 260 155-429 250-519 (626)
111 KOG0646 WD40 repeat protein [G 99.9 1.8E-21 3.9E-26 176.6 23.9 261 164-432 10-308 (476)
112 KOG0264 Nucleosome remodeling 99.9 2.8E-22 6.1E-27 181.5 18.1 210 82-385 169-405 (422)
113 KOG0640 mRNA cleavage stimulat 99.9 2.3E-22 4.9E-27 173.6 16.4 219 185-432 105-336 (430)
114 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1E-19 2.3E-24 169.2 34.5 256 163-432 3-280 (300)
115 KOG0772 Uncharacterized conser 99.9 6.8E-22 1.5E-26 181.2 18.9 243 185-431 160-445 (641)
116 KOG1408 WD40 repeat protein [F 99.9 3.4E-22 7.4E-27 189.4 16.9 246 87-385 456-714 (1080)
117 KOG1445 Tumor-specific antigen 99.9 3.6E-21 7.8E-26 180.4 23.3 139 288-432 600-751 (1012)
118 KOG1539 WD repeat protein [Gen 99.9 4.1E-21 8.9E-26 185.3 23.5 313 90-430 244-647 (910)
119 KOG0643 Translation initiation 99.9 9.6E-21 2.1E-25 160.5 21.9 198 187-432 5-221 (327)
120 KOG0267 Microtubule severing p 99.9 7.1E-23 1.5E-27 194.5 10.0 214 161-422 40-259 (825)
121 KOG0269 WD40 repeat-containing 99.9 1.1E-21 2.5E-26 187.7 16.4 222 160-426 99-335 (839)
122 KOG0641 WD40 repeat protein [G 99.9 1.9E-20 4.1E-25 155.1 21.4 247 87-384 86-349 (350)
123 KOG1274 WD40 repeat protein [G 99.9 2.7E-20 5.8E-25 181.6 26.0 236 189-432 10-263 (933)
124 KOG1063 RNA polymerase II elon 99.9 8.2E-21 1.8E-25 179.8 21.0 334 86-431 263-648 (764)
125 KOG0646 WD40 repeat protein [G 99.9 6.1E-21 1.3E-25 173.2 18.6 227 157-384 89-350 (476)
126 KOG0321 WD40 repeat-containing 99.9 8.3E-21 1.8E-25 178.2 19.5 305 99-431 61-391 (720)
127 KOG0302 Ribosome Assembly prot 99.9 1.3E-20 2.8E-25 166.8 19.5 256 87-428 148-435 (440)
128 KOG2445 Nuclear pore complex c 99.9 1E-19 2.2E-24 157.3 24.1 243 154-430 18-317 (361)
129 KOG0647 mRNA export protein (c 99.9 9.4E-20 2E-24 157.1 22.7 236 189-431 24-281 (347)
130 KOG2048 WD40 repeat protein [G 99.9 2.9E-19 6.4E-24 169.1 27.3 233 153-431 27-275 (691)
131 KOG2048 WD40 repeat protein [G 99.9 1.3E-19 2.9E-24 171.4 24.1 285 73-428 17-316 (691)
132 KOG1034 Transcriptional repres 99.9 2E-20 4.4E-25 162.9 16.5 298 85-430 33-382 (385)
133 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.8E-18 8.2E-23 158.7 32.3 275 103-404 2-298 (300)
134 KOG0650 WD40 repeat nucleolar 99.9 1.4E-20 3E-25 175.6 15.3 300 85-428 395-732 (733)
135 KOG0268 Sof1-like rRNA process 99.9 6.4E-21 1.4E-25 167.9 12.4 235 183-431 57-302 (433)
136 KOG0270 WD40 repeat-containing 99.8 2.7E-20 5.8E-25 168.1 15.6 268 73-391 162-456 (463)
137 KOG0302 Ribosome Assembly prot 99.8 7.4E-20 1.6E-24 162.0 17.9 216 187-431 146-378 (440)
138 KOG2055 WD40 repeat protein [G 99.8 2.5E-19 5.5E-24 162.5 21.4 272 153-431 217-512 (514)
139 KOG1274 WD40 repeat protein [G 99.8 3.4E-19 7.4E-24 174.0 23.7 243 87-385 10-263 (933)
140 KOG0321 WD40 repeat-containing 99.8 1.3E-19 2.7E-24 170.4 17.8 232 163-432 66-348 (720)
141 KOG1332 Vesicle coat complex C 99.8 5.6E-20 1.2E-24 154.0 13.9 205 188-430 7-240 (299)
142 KOG4283 Transcription-coupled 99.8 5.8E-19 1.3E-23 151.7 20.1 196 188-388 39-280 (397)
143 KOG0639 Transducin-like enhanc 99.8 9.1E-20 2E-24 166.8 15.7 232 90-343 465-703 (705)
144 KOG1273 WD40 repeat protein [G 99.8 1.4E-18 3.1E-23 150.6 22.1 266 154-430 28-321 (405)
145 KOG0307 Vesicle coat complex C 99.8 4.7E-20 1E-24 184.1 14.2 222 162-387 81-330 (1049)
146 KOG2096 WD40 repeat protein [G 99.8 5.5E-19 1.2E-23 153.4 18.5 208 185-431 79-308 (420)
147 KOG4328 WD40 protein [Function 99.8 2.4E-18 5.3E-23 156.0 22.7 277 150-430 185-494 (498)
148 KOG0267 Microtubule severing p 99.8 4.1E-20 8.9E-25 175.9 11.4 231 85-375 23-259 (825)
149 KOG2919 Guanine nucleotide-bin 99.8 1.9E-18 4E-23 150.4 20.6 270 94-421 53-360 (406)
150 KOG2055 WD40 repeat protein [G 99.8 7.5E-19 1.6E-23 159.5 18.8 279 91-384 214-512 (514)
151 KOG4378 Nuclear protein COP1 [ 99.8 1E-18 2.2E-23 159.8 19.6 254 93-405 37-302 (673)
152 KOG0303 Actin-binding protein 99.8 7.9E-19 1.7E-23 156.4 18.1 206 187-431 76-294 (472)
153 KOG2106 Uncharacterized conser 99.8 2E-17 4.3E-22 151.8 26.6 329 60-430 268-625 (626)
154 KOG0269 WD40 repeat-containing 99.8 1.3E-19 2.9E-24 173.7 12.8 195 194-431 89-296 (839)
155 KOG1188 WD40 repeat protein [G 99.8 4.3E-18 9.3E-23 149.3 19.2 261 162-430 41-345 (376)
156 KOG1063 RNA polymerase II elon 99.8 1.4E-17 3E-22 158.2 22.5 264 161-429 24-344 (764)
157 KOG0649 WD40 repeat protein [G 99.8 1.2E-17 2.5E-22 140.1 19.0 246 82-341 54-313 (325)
158 KOG0642 Cell-cycle nuclear pro 99.8 3E-18 6.5E-23 159.3 15.6 260 82-431 286-561 (577)
159 KOG4378 Nuclear protein COP1 [ 99.8 1.1E-17 2.4E-22 153.2 18.5 219 164-432 50-281 (673)
160 KOG0303 Actin-binding protein 99.8 2.7E-17 5.9E-22 146.7 20.3 204 85-302 76-297 (472)
161 COG2319 FOG: WD40 repeat [Gene 99.8 1.7E-15 3.7E-20 146.4 34.1 320 85-431 60-400 (466)
162 KOG1007 WD repeat protein TSSC 99.8 1.7E-17 3.7E-22 142.4 17.2 207 183-430 113-360 (370)
163 KOG1587 Cytoplasmic dynein int 99.8 1.2E-16 2.6E-21 155.4 24.8 254 171-431 222-516 (555)
164 KOG4227 WD40 repeat protein [G 99.8 3.2E-17 7E-22 146.0 18.9 297 73-429 39-385 (609)
165 KOG1517 Guanine nucleotide bin 99.8 1.3E-16 2.7E-21 158.1 23.4 270 152-431 1067-1381(1387)
166 KOG4328 WD40 protein [Function 99.8 9.1E-17 2E-21 145.9 20.7 243 183-431 177-450 (498)
167 KOG0650 WD40 repeat nucleolar 99.8 7.3E-17 1.6E-21 150.9 20.0 236 183-429 391-678 (733)
168 KOG1538 Uncharacterized conser 99.8 1.1E-16 2.4E-21 151.4 20.3 266 151-430 14-292 (1081)
169 KOG0322 G-protein beta subunit 99.7 1E-16 2.2E-21 136.1 17.2 263 161-430 25-322 (323)
170 KOG2919 Guanine nucleotide-bin 99.7 3.9E-16 8.4E-21 136.1 19.1 235 195-432 52-328 (406)
171 KOG0644 Uncharacterized conser 99.7 7.5E-18 1.6E-22 162.8 9.3 274 85-429 185-466 (1113)
172 KOG1273 WD40 repeat protein [G 99.7 3.8E-16 8.2E-21 135.7 18.1 234 195-431 26-280 (405)
173 KOG0649 WD40 repeat protein [G 99.7 4.7E-15 1E-19 124.6 23.2 279 92-428 12-313 (325)
174 COG2319 FOG: WD40 repeat [Gene 99.7 5.7E-14 1.2E-18 135.8 34.7 311 92-432 111-443 (466)
175 KOG1034 Transcriptional repres 99.7 3.7E-16 8.1E-21 136.5 16.7 241 188-432 34-338 (385)
176 KOG2110 Uncharacterized conser 99.7 1.5E-14 3.2E-19 128.6 26.4 233 192-431 5-248 (391)
177 KOG0307 Vesicle coat complex C 99.7 1.1E-16 2.4E-21 160.2 13.6 239 183-431 56-327 (1049)
178 KOG1334 WD40 repeat protein [G 99.7 2.2E-16 4.7E-21 144.6 14.3 295 84-430 136-465 (559)
179 KOG0322 G-protein beta subunit 99.7 3.9E-16 8.5E-21 132.5 14.3 275 85-383 9-322 (323)
180 KOG1240 Protein kinase contain 99.7 4.9E-15 1.1E-19 149.2 23.7 197 185-386 1091-1336(1431)
181 KOG1963 WD40 repeat protein [G 99.7 3.4E-14 7.4E-19 139.1 26.4 327 85-432 156-539 (792)
182 KOG2110 Uncharacterized conser 99.7 3.4E-13 7.4E-18 120.0 29.8 185 194-385 48-249 (391)
183 PRK11028 6-phosphogluconolacto 99.7 5E-13 1.1E-17 126.3 33.0 262 164-431 5-304 (330)
184 KOG1009 Chromatin assembly com 99.7 8.5E-15 1.8E-19 131.5 19.2 176 91-343 14-194 (434)
185 KOG0642 Cell-cycle nuclear pro 99.7 1.9E-16 4.2E-21 147.4 9.0 220 82-357 336-574 (577)
186 KOG1007 WD repeat protein TSSC 99.6 7.6E-15 1.6E-19 126.3 16.1 252 83-385 56-362 (370)
187 KOG1517 Guanine nucleotide bin 99.6 4.1E-14 8.8E-19 140.6 23.1 282 87-387 1061-1384(1387)
188 KOG0290 Conserved WD40 repeat- 99.6 2E-14 4.2E-19 123.9 18.0 198 190-428 148-362 (364)
189 KOG0290 Conserved WD40 repeat- 99.6 1.4E-14 3E-19 124.8 17.1 208 189-432 93-319 (364)
190 KOG0771 Prolactin regulatory e 99.6 1.2E-14 2.6E-19 131.4 15.8 197 153-386 148-356 (398)
191 KOG1240 Protein kinase contain 99.6 1.3E-13 2.9E-18 139.0 24.6 245 183-432 1039-1335(1431)
192 KOG1963 WD40 repeat protein [G 99.6 2.3E-13 4.9E-18 133.4 23.7 325 87-431 202-583 (792)
193 KOG1524 WD40 repeat-containing 99.6 2.6E-14 5.6E-19 132.5 15.8 265 89-427 13-282 (737)
194 KOG1310 WD40 repeat protein [G 99.6 1.8E-14 3.9E-19 133.9 14.0 211 183-431 41-303 (758)
195 KOG1445 Tumor-specific antigen 99.6 1.1E-14 2.4E-19 137.3 12.3 187 242-431 590-798 (1012)
196 KOG1272 WD40-repeat-containing 99.6 9.7E-15 2.1E-19 133.1 11.2 223 193-429 130-360 (545)
197 KOG1188 WD40 repeat protein [G 99.6 7.8E-14 1.7E-18 122.8 16.4 183 205-431 41-242 (376)
198 KOG2111 Uncharacterized conser 99.6 7.7E-12 1.7E-16 109.5 28.3 219 163-387 18-259 (346)
199 KOG2111 Uncharacterized conser 99.5 1.1E-11 2.3E-16 108.5 25.3 229 194-431 7-256 (346)
200 KOG1587 Cytoplasmic dynein int 99.5 9.2E-13 2E-17 128.6 20.7 227 154-385 247-517 (555)
201 TIGR03300 assembly_YfgL outer 99.5 1.9E-11 4.1E-16 117.7 29.4 292 101-428 64-376 (377)
202 KOG1009 Chromatin assembly com 99.5 6.1E-13 1.3E-17 119.7 17.3 280 85-387 60-375 (434)
203 KOG4227 WD40 repeat protein [G 99.5 1.7E-12 3.6E-17 116.3 19.4 243 185-431 49-322 (609)
204 KOG1409 Uncharacterized conser 99.5 7.4E-13 1.6E-17 116.8 16.9 243 85-346 19-272 (404)
205 PRK01742 tolB translocation pr 99.5 5.2E-12 1.1E-16 123.4 24.4 226 169-404 182-423 (429)
206 KOG1538 Uncharacterized conser 99.5 9.3E-13 2E-17 125.2 17.3 261 92-384 14-293 (1081)
207 KOG0644 Uncharacterized conser 99.5 4E-14 8.6E-19 137.5 7.1 229 150-430 189-425 (1113)
208 PRK11028 6-phosphogluconolacto 99.5 1.1E-10 2.4E-15 110.2 29.5 230 153-385 38-305 (330)
209 KOG3881 Uncharacterized conser 99.5 8.2E-12 1.8E-16 112.1 19.6 258 91-394 56-330 (412)
210 KOG2321 WD40 repeat protein [G 99.5 2.3E-11 5E-16 114.2 22.2 235 190-431 49-343 (703)
211 KOG1310 WD40 repeat protein [G 99.4 2.1E-12 4.5E-17 120.4 13.6 233 74-393 34-312 (758)
212 KOG2321 WD40 repeat protein [G 99.4 9.8E-12 2.1E-16 116.6 18.0 267 89-388 50-347 (703)
213 KOG1334 WD40 repeat protein [G 99.4 2.9E-12 6.3E-17 117.9 14.1 243 183-431 133-424 (559)
214 PF02239 Cytochrom_D1: Cytochr 99.4 3.8E-10 8.2E-15 107.1 28.2 259 164-432 9-303 (369)
215 TIGR03300 assembly_YfgL outer 99.4 6.9E-10 1.5E-14 106.9 30.3 259 161-432 65-339 (377)
216 KOG1523 Actin-related protein 99.4 2E-10 4.3E-15 100.8 23.5 223 153-375 12-269 (361)
217 KOG3881 Uncharacterized conser 99.4 4.1E-11 8.9E-16 107.7 19.3 231 191-432 54-321 (412)
218 KOG0771 Prolactin regulatory e 99.4 1.6E-11 3.5E-16 111.3 14.1 187 196-430 148-353 (398)
219 KOG0974 WD-repeat protein WDR6 99.4 6.9E-11 1.5E-15 118.2 19.6 179 242-431 99-288 (967)
220 PRK01742 tolB translocation pr 99.3 2.9E-11 6.3E-16 118.1 14.8 217 85-325 198-424 (429)
221 KOG1523 Actin-related protein 99.3 1.8E-10 3.9E-15 101.1 17.9 206 188-430 6-235 (361)
222 KOG1524 WD40 repeat-containing 99.3 3.9E-11 8.5E-16 111.7 14.4 216 190-421 12-246 (737)
223 PRK03629 tolB translocation pr 99.3 4.5E-09 9.7E-14 102.6 27.9 226 170-404 178-425 (429)
224 KOG1272 WD40-repeat-containing 99.3 2E-11 4.3E-16 111.8 10.5 219 154-382 134-360 (545)
225 KOG2394 WD40 protein DMR-N9 [G 99.3 2.6E-11 5.6E-16 113.0 10.6 102 183-326 281-384 (636)
226 PF02239 Cytochrom_D1: Cytochr 99.3 2.8E-09 6.1E-14 101.2 24.4 267 155-432 42-348 (369)
227 KOG4547 WD40 repeat-containing 99.3 3E-10 6.5E-15 107.4 17.4 213 201-430 2-219 (541)
228 TIGR02658 TTQ_MADH_Hv methylam 99.3 6.5E-08 1.4E-12 90.0 32.3 251 171-432 27-331 (352)
229 PRK11138 outer membrane biogen 99.2 1.1E-08 2.3E-13 99.2 28.2 254 161-431 120-394 (394)
230 KOG2394 WD40 protein DMR-N9 [G 99.2 2.8E-10 6.1E-15 106.2 16.2 155 192-366 219-384 (636)
231 KOG4190 Uncharacterized conser 99.2 1.8E-11 3.9E-16 114.4 8.2 216 84-386 729-950 (1034)
232 PRK04922 tolB translocation pr 99.2 4.6E-09 9.9E-14 102.9 25.3 219 171-400 184-426 (433)
233 KOG4497 Uncharacterized conser 99.2 2.1E-09 4.5E-14 94.8 19.5 300 95-423 13-424 (447)
234 KOG1354 Serine/threonine prote 99.2 3E-09 6.5E-14 94.4 19.0 261 154-430 30-358 (433)
235 KOG1064 RAVE (regulator of V-A 99.2 3.9E-10 8.5E-15 118.3 14.5 194 188-393 2204-2407(2439)
236 KOG1064 RAVE (regulator of V-A 99.2 2.8E-10 6E-15 119.4 13.3 209 156-377 2215-2439(2439)
237 KOG4547 WD40 repeat-containing 99.1 4.8E-09 1E-13 99.4 19.5 141 203-385 69-221 (541)
238 KOG1354 Serine/threonine prote 99.1 5.7E-10 1.2E-14 98.9 12.4 264 90-386 25-361 (433)
239 PRK05137 tolB translocation pr 99.1 3.9E-08 8.5E-13 96.4 26.8 209 170-431 181-412 (435)
240 PRK02889 tolB translocation pr 99.1 5.1E-08 1.1E-12 95.3 26.3 226 170-404 175-422 (427)
241 PF13360 PQQ_2: PQQ-like domai 99.1 1.3E-07 2.7E-12 84.9 26.9 211 170-390 2-236 (238)
242 PF13360 PQQ_2: PQQ-like domai 99.1 1.2E-07 2.6E-12 85.0 26.4 207 213-432 2-231 (238)
243 KOG2139 WD40 repeat protein [G 99.1 8.2E-09 1.8E-13 92.2 17.8 191 192-425 98-305 (445)
244 PRK11138 outer membrane biogen 99.1 1.9E-07 4.1E-12 90.4 27.7 259 161-432 69-354 (394)
245 KOG0974 WD-repeat protein WDR6 99.1 5.6E-09 1.2E-13 104.9 17.0 188 193-385 88-289 (967)
246 KOG2695 WD40 repeat protein [G 99.0 1.1E-09 2.3E-14 97.2 8.9 150 243-394 225-386 (425)
247 KOG0280 Uncharacterized conser 99.0 2.1E-08 4.5E-13 87.3 16.4 110 275-387 125-244 (339)
248 TIGR02800 propeller_TolB tol-p 99.0 3.3E-07 7.2E-12 89.6 26.5 197 170-376 169-386 (417)
249 KOG2139 WD40 repeat protein [G 99.0 1.4E-06 3.1E-11 78.2 25.7 262 158-430 107-430 (445)
250 PF08662 eIF2A: Eukaryotic tra 99.0 8.1E-08 1.8E-12 82.9 17.8 106 270-385 58-180 (194)
251 KOG2315 Predicted translation 99.0 7.5E-07 1.6E-11 84.3 25.1 260 154-431 38-390 (566)
252 PF10282 Lactonase: Lactonase, 99.0 7.2E-06 1.6E-10 77.8 32.7 255 170-430 12-321 (345)
253 PRK05137 tolB translocation pr 98.9 1.8E-07 3.9E-12 91.8 22.3 169 171-387 226-415 (435)
254 PRK03629 tolB translocation pr 98.9 1.2E-06 2.5E-11 85.7 27.8 202 215-430 180-405 (429)
255 PF08662 eIF2A: Eukaryotic tra 98.9 9.2E-08 2E-12 82.5 17.8 128 291-431 37-179 (194)
256 PRK04922 tolB translocation pr 98.9 5.5E-07 1.2E-11 88.3 25.4 205 214-431 184-411 (433)
257 KOG0280 Uncharacterized conser 98.9 1.4E-07 3.1E-12 82.2 18.0 226 163-429 87-331 (339)
258 PRK00178 tolB translocation pr 98.9 2.4E-06 5.3E-11 83.8 27.4 205 172-384 180-406 (430)
259 KOG1409 Uncharacterized conser 98.9 1.1E-07 2.4E-12 84.6 15.8 226 157-385 32-271 (404)
260 KOG4714 Nucleoporin [Nuclear s 98.9 3.5E-08 7.5E-13 84.6 11.4 203 175-382 72-316 (319)
261 KOG4190 Uncharacterized conser 98.8 4.4E-09 9.4E-14 98.7 6.4 209 184-429 727-946 (1034)
262 PRK02889 tolB translocation pr 98.8 1.1E-06 2.5E-11 85.8 23.7 200 214-424 176-394 (427)
263 PRK04792 tolB translocation pr 98.8 2.8E-06 6E-11 83.5 26.4 224 172-404 199-444 (448)
264 PF00400 WD40: WD domain, G-be 98.8 1.5E-08 3.2E-13 62.7 6.6 38 183-220 2-39 (39)
265 KOG2315 Predicted translation 98.8 1.6E-06 3.5E-11 82.1 22.2 205 171-385 146-391 (566)
266 TIGR02800 propeller_TolB tol-p 98.8 6E-06 1.3E-10 80.7 27.2 203 214-429 170-395 (417)
267 KOG3914 WD repeat protein WDR4 98.8 5.4E-07 1.2E-11 82.0 17.7 154 196-353 66-232 (390)
268 KOG0309 Conserved WD40 repeat- 98.8 4.3E-08 9.2E-13 95.2 11.3 189 192-385 24-233 (1081)
269 KOG4497 Uncharacterized conser 98.8 3.6E-08 7.9E-13 87.1 9.8 212 198-429 14-238 (447)
270 PLN02919 haloacid dehalogenase 98.8 1.5E-05 3.3E-10 85.8 31.4 230 196-432 571-889 (1057)
271 KOG0309 Conserved WD40 repeat- 98.8 7E-08 1.5E-12 93.7 12.2 277 91-385 25-340 (1081)
272 COG5354 Uncharacterized protei 98.8 2.4E-05 5.3E-10 73.5 27.4 317 89-431 31-395 (561)
273 PF15492 Nbas_N: Neuroblastoma 98.7 1.8E-05 3.9E-10 69.5 24.5 224 163-432 10-260 (282)
274 KOG1275 PAB-dependent poly(A) 98.7 2.1E-07 4.5E-12 92.6 14.1 179 243-429 148-340 (1118)
275 COG2706 3-carboxymuconate cycl 98.7 8.9E-05 1.9E-09 67.1 29.1 255 170-430 15-320 (346)
276 KOG2695 WD40 repeat protein [G 98.7 5.6E-08 1.2E-12 86.5 7.8 138 284-432 227-377 (425)
277 KOG4532 WD40-like repeat conta 98.7 1E-05 2.3E-10 70.0 21.2 213 173-394 54-292 (344)
278 TIGR02658 TTQ_MADH_Hv methylam 98.7 8.6E-05 1.9E-09 69.4 29.1 228 163-393 69-339 (352)
279 KOG4532 WD40-like repeat conta 98.7 4.6E-06 1E-10 72.1 18.4 193 161-353 84-291 (344)
280 PRK00178 tolB translocation pr 98.6 4E-05 8.6E-10 75.3 27.6 204 215-430 180-405 (430)
281 COG5354 Uncharacterized protei 98.6 1.4E-05 3.1E-10 75.0 21.8 207 171-387 152-398 (561)
282 KOG2041 WD40 repeat protein [G 98.6 1.6E-06 3.4E-11 84.3 16.1 266 92-404 16-316 (1189)
283 PF10282 Lactonase: Lactonase, 98.6 0.00031 6.7E-09 66.7 31.3 232 152-384 39-322 (345)
284 PLN02919 haloacid dehalogenase 98.6 0.00012 2.6E-09 79.1 30.3 234 153-388 571-892 (1057)
285 PRK04792 tolB translocation pr 98.6 6.5E-05 1.4E-09 73.9 26.1 204 215-430 199-424 (448)
286 KOG3914 WD repeat protein WDR4 98.5 5.2E-07 1.1E-11 82.1 9.8 100 166-303 127-227 (390)
287 KOG2066 Vacuolar assembly/sort 98.5 1.5E-05 3.2E-10 78.9 19.9 180 154-385 42-234 (846)
288 cd00216 PQQ_DH Dehydrogenases 98.5 0.00011 2.4E-09 73.0 26.9 257 161-432 61-425 (488)
289 COG4946 Uncharacterized protei 98.5 0.00024 5.1E-09 66.5 26.4 130 170-302 340-480 (668)
290 PRK01029 tolB translocation pr 98.5 6.8E-05 1.5E-09 73.2 24.3 214 171-431 165-403 (428)
291 KOG4714 Nucleoporin [Nuclear s 98.5 7E-07 1.5E-11 76.7 8.8 198 88-342 87-316 (319)
292 PRK01029 tolB translocation pr 98.5 7.6E-05 1.7E-09 72.9 23.6 110 275-389 284-408 (428)
293 KOG1912 WD40 repeat protein [G 98.5 0.00012 2.6E-09 72.3 24.1 325 85-432 50-552 (1062)
294 COG5170 CDC55 Serine/threonine 98.5 8.6E-06 1.9E-10 71.9 14.8 235 191-429 25-365 (460)
295 KOG1912 WD40 repeat protein [G 98.4 5.9E-05 1.3E-09 74.4 21.8 214 171-430 35-303 (1062)
296 COG4946 Uncharacterized protei 98.4 0.00023 4.9E-09 66.6 23.6 201 202-416 276-504 (668)
297 KOG2041 WD40 repeat protein [G 98.4 1.3E-05 2.9E-10 78.1 15.4 260 78-365 59-366 (1189)
298 cd00216 PQQ_DH Dehydrogenases 98.4 0.0018 3.9E-08 64.5 31.2 222 162-394 111-434 (488)
299 KOG2314 Translation initiation 98.3 9.4E-05 2E-09 70.4 19.6 230 193-431 250-525 (698)
300 PF08450 SGL: SMP-30/Gluconola 98.3 0.0022 4.8E-08 57.7 29.4 211 197-419 4-244 (246)
301 PF08450 SGL: SMP-30/Gluconola 98.3 0.0018 3.9E-08 58.3 26.8 195 163-365 14-233 (246)
302 KOG2114 Vacuolar assembly/sort 98.3 0.00024 5.2E-09 71.1 22.1 213 153-393 27-252 (933)
303 PF00780 CNH: CNH domain; Int 98.3 0.0011 2.4E-08 60.8 25.6 230 156-394 2-265 (275)
304 KOG1645 RING-finger-containing 98.2 4.6E-05 1E-09 69.7 14.7 92 173-303 175-270 (463)
305 KOG2314 Translation initiation 98.2 0.00037 8E-09 66.5 21.0 272 93-384 252-573 (698)
306 PF04762 IKI3: IKI3 family; I 98.2 0.0028 6.2E-08 67.4 30.3 331 91-429 121-562 (928)
307 PF00400 WD40: WD domain, G-be 98.2 5.6E-06 1.2E-10 50.9 5.9 35 308-342 3-39 (39)
308 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.001 2.3E-08 57.8 21.2 259 160-432 62-352 (354)
309 KOG3621 WD40 repeat-containing 98.2 0.0001 2.2E-09 72.2 17.0 284 82-386 24-355 (726)
310 PRK04043 tolB translocation pr 98.2 0.0023 5.1E-08 62.2 26.5 200 171-424 169-391 (419)
311 COG5170 CDC55 Serine/threonine 98.2 3.2E-05 7E-10 68.4 11.8 229 154-383 31-366 (460)
312 KOG1832 HIV-1 Vpr-binding prot 98.2 1.6E-06 3.5E-11 86.2 4.0 190 182-432 1091-1292(1516)
313 KOG1275 PAB-dependent poly(A) 98.1 0.00011 2.5E-09 73.8 15.7 178 161-342 147-340 (1118)
314 PF06433 Me-amine-dh_H: Methyl 98.1 0.0082 1.8E-07 55.3 28.9 254 171-432 17-321 (342)
315 PF04762 IKI3: IKI3 family; I 98.1 0.0017 3.7E-08 69.1 25.2 259 153-430 77-378 (928)
316 KOG0882 Cyclophilin-related pe 98.1 2.3E-05 5E-10 72.6 9.4 198 156-391 15-238 (558)
317 KOG0882 Cyclophilin-related pe 98.0 5.4E-05 1.2E-09 70.2 10.3 225 85-352 48-313 (558)
318 PF08596 Lgl_C: Lethal giant l 97.9 0.00094 2E-08 64.0 17.9 231 194-432 3-291 (395)
319 COG2706 3-carboxymuconate cycl 97.8 0.023 5E-07 51.9 24.0 266 83-364 32-344 (346)
320 PF15492 Nbas_N: Neuroblastoma 97.8 0.0023 5.1E-08 56.5 16.5 195 94-302 47-262 (282)
321 KOG1645 RING-finger-containing 97.8 0.005 1.1E-07 56.8 18.9 221 154-384 198-461 (463)
322 smart00320 WD40 WD40 repeats. 97.8 0.00011 2.4E-09 43.9 6.0 38 183-220 3-40 (40)
323 PF11768 DUF3312: Protein of u 97.8 0.036 7.8E-07 54.0 25.4 76 267-349 255-334 (545)
324 PF03178 CPSF_A: CPSF A subuni 97.7 0.029 6.4E-07 52.7 23.9 207 172-381 3-262 (321)
325 PF07433 DUF1513: Protein of u 97.7 0.042 9E-07 50.1 25.5 211 163-378 19-279 (305)
326 KOG3621 WD40 repeat-containing 97.7 0.00098 2.1E-08 65.6 13.6 158 191-385 32-198 (726)
327 KOG2066 Vacuolar assembly/sort 97.7 0.00032 7E-09 69.7 10.5 141 271-432 39-188 (846)
328 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0044 9.6E-08 47.1 14.2 95 326-427 15-110 (111)
329 KOG1832 HIV-1 Vpr-binding prot 97.6 2.3E-05 5.1E-10 78.3 2.3 198 142-354 1092-1301(1516)
330 PF08596 Lgl_C: Lethal giant l 97.6 0.0093 2E-07 57.2 19.6 204 181-419 75-324 (395)
331 PF04053 Coatomer_WDAD: Coatom 97.5 0.054 1.2E-06 52.9 23.3 221 186-431 26-262 (443)
332 PF03178 CPSF_A: CPSF A subuni 97.5 0.096 2.1E-06 49.2 25.0 167 215-385 3-203 (321)
333 PHA02713 hypothetical protein; 97.5 0.017 3.7E-07 58.5 20.0 208 215-432 273-534 (557)
334 PF00780 CNH: CNH domain; Int 97.4 0.099 2.2E-06 47.8 26.6 216 202-432 5-256 (275)
335 PF06433 Me-amine-dh_H: Methyl 97.4 0.096 2.1E-06 48.4 22.0 230 163-397 59-333 (342)
336 PF11768 DUF3312: Protein of u 97.4 0.0068 1.5E-07 58.9 15.2 91 173-302 238-332 (545)
337 PRK04043 tolB translocation pr 97.4 0.0081 1.8E-07 58.5 16.0 129 170-301 256-402 (419)
338 PF14583 Pectate_lyase22: Olig 97.3 0.15 3.3E-06 48.0 22.3 266 155-429 41-379 (386)
339 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.3 0.25 5.4E-06 49.7 28.9 81 336-419 441-522 (527)
340 PHA02713 hypothetical protein; 97.3 0.018 3.8E-07 58.4 17.6 182 203-387 303-536 (557)
341 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.11 2.4E-06 45.6 21.0 99 204-302 23-126 (354)
342 KOG1920 IkappaB kinase complex 97.3 0.11 2.4E-06 54.9 23.0 222 153-386 70-324 (1265)
343 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.3 0.26 5.6E-06 49.6 29.9 183 161-349 69-338 (527)
344 KOG2444 WD40 repeat protein [G 97.2 0.0012 2.6E-08 56.4 6.5 102 281-386 70-179 (238)
345 PF08553 VID27: VID27 cytoplas 97.1 0.012 2.6E-07 60.7 14.5 133 287-430 500-646 (794)
346 KOG2114 Vacuolar assembly/sort 97.1 0.078 1.7E-06 53.9 19.5 190 198-431 29-243 (933)
347 KOG1008 Uncharacterized conser 97.1 0.0002 4.4E-09 69.5 1.4 159 268-431 99-275 (783)
348 PF04053 Coatomer_WDAD: Coatom 97.1 0.14 3E-06 50.0 20.9 218 152-384 35-262 (443)
349 KOG4441 Proteins containing BT 97.1 0.054 1.2E-06 54.9 18.7 215 202-424 283-534 (571)
350 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.049 1.1E-06 41.5 13.8 86 283-379 17-109 (111)
351 KOG2444 WD40 repeat protein [G 97.1 0.001 2.2E-08 56.9 5.1 139 283-431 32-177 (238)
352 PF06977 SdiA-regulated: SdiA- 97.0 0.25 5.4E-06 44.2 24.3 199 186-428 15-247 (248)
353 PF08553 VID27: VID27 cytoplas 97.0 0.023 5E-07 58.6 14.8 96 283-383 544-646 (794)
354 KOG3617 WD40 and TPR repeat-co 97.0 0.016 3.5E-07 58.6 13.0 69 153-222 63-131 (1416)
355 KOG2079 Vacuolar assembly/sort 96.9 0.0056 1.2E-07 63.3 9.5 110 268-383 86-202 (1206)
356 KOG1008 Uncharacterized conser 96.9 0.00035 7.6E-09 67.9 0.9 182 163-385 72-276 (783)
357 PF04841 Vps16_N: Vps16, N-ter 96.8 0.53 1.2E-05 45.8 24.5 196 172-382 62-285 (410)
358 KOG4441 Proteins containing BT 96.8 0.13 2.9E-06 52.1 19.0 211 171-386 301-548 (571)
359 PRK02888 nitrous-oxide reducta 96.8 0.31 6.8E-06 48.9 20.7 61 366-432 288-352 (635)
360 PRK02888 nitrous-oxide reducta 96.7 0.48 1E-05 47.6 21.3 174 167-345 211-405 (635)
361 KOG4499 Ca2+-binding protein R 96.7 0.31 6.8E-06 42.2 17.3 194 171-367 37-264 (310)
362 TIGR03074 PQQ_membr_DH membran 96.6 0.65 1.4E-05 48.7 22.7 188 204-392 194-485 (764)
363 COG5276 Uncharacterized conser 96.6 0.51 1.1E-05 42.4 24.8 203 187-392 36-249 (370)
364 KOG1920 IkappaB kinase complex 96.6 0.46 9.9E-06 50.5 20.7 227 192-431 68-322 (1265)
365 PF07433 DUF1513: Protein of u 96.5 0.61 1.3E-05 42.7 22.9 226 94-342 8-283 (305)
366 smart00320 WD40 WD40 repeats. 96.5 0.0077 1.7E-07 35.3 5.0 35 348-382 4-40 (40)
367 KOG4640 Anaphase-promoting com 96.5 0.016 3.4E-07 56.7 8.9 73 155-229 26-99 (665)
368 KOG2395 Protein involved in va 96.4 0.22 4.8E-06 48.1 15.7 139 242-384 344-500 (644)
369 PF04841 Vps16_N: Vps16, N-ter 96.3 1.1 2.3E-05 43.7 20.9 166 253-429 62-244 (410)
370 KOG2079 Vacuolar assembly/sort 96.2 0.03 6.4E-07 58.2 9.9 109 317-429 90-201 (1206)
371 PF05096 Glu_cyclase_2: Glutam 96.2 0.88 1.9E-05 40.7 23.3 165 183-352 34-211 (264)
372 PF12894 Apc4_WD40: Anaphase-p 96.2 0.02 4.3E-07 36.4 5.4 33 192-225 11-43 (47)
373 PF14655 RAB3GAP2_N: Rab3 GTPa 96.0 0.17 3.7E-06 48.7 13.2 80 314-393 305-407 (415)
374 COG3386 Gluconolactonase [Carb 96.0 1.3 2.9E-05 41.0 22.6 194 166-366 42-264 (307)
375 KOG4640 Anaphase-promoting com 95.9 0.053 1.2E-06 53.2 9.5 90 270-365 19-114 (665)
376 PHA03098 kelch-like protein; P 95.9 0.64 1.4E-05 47.1 17.8 147 278-432 340-512 (534)
377 COG3386 Gluconolactonase [Carb 95.8 1.5 3.3E-05 40.6 23.6 212 199-422 31-277 (307)
378 PHA02790 Kelch-like protein; P 95.8 0.4 8.7E-06 47.7 15.9 167 203-375 271-456 (480)
379 TIGR03074 PQQ_membr_DH membran 95.7 3.4 7.4E-05 43.5 23.8 186 161-352 194-485 (764)
380 PHA03098 kelch-like protein; P 95.4 0.85 1.8E-05 46.2 16.8 181 203-386 294-513 (534)
381 PRK13616 lipoprotein LpqB; Pro 95.4 0.77 1.7E-05 46.8 16.1 129 170-340 429-564 (591)
382 KOG2395 Protein involved in va 95.4 0.4 8.6E-06 46.5 12.9 136 203-344 344-500 (644)
383 COG3204 Uncharacterized protei 95.3 2.1 4.5E-05 38.7 21.9 162 188-352 81-270 (316)
384 PHA02790 Kelch-like protein; P 95.3 0.94 2E-05 45.1 16.2 168 253-432 288-471 (480)
385 COG3490 Uncharacterized protei 95.0 0.91 2E-05 40.7 13.1 195 156-382 120-346 (366)
386 KOG3617 WD40 and TPR repeat-co 95.0 0.14 3E-06 52.1 9.0 68 273-345 61-132 (1416)
387 PF14781 BBS2_N: Ciliary BBSom 94.9 1.1 2.5E-05 35.4 12.1 103 198-300 4-126 (136)
388 PF00930 DPPIV_N: Dipeptidyl p 94.4 4.7 0.0001 38.3 17.9 215 201-430 1-265 (353)
389 PF02897 Peptidase_S9_N: Proly 94.3 5.6 0.00012 38.7 28.0 218 167-388 146-408 (414)
390 PLN02193 nitrile-specifier pro 93.9 7.3 0.00016 38.7 19.5 102 283-387 231-354 (470)
391 PRK13616 lipoprotein LpqB; Pro 93.9 8.6 0.00019 39.3 19.9 183 190-378 347-562 (591)
392 COG1520 FOG: WD40-like repeat 93.7 6.8 0.00015 37.5 23.0 191 162-355 69-279 (370)
393 PF05096 Glu_cyclase_2: Glutam 93.7 5.1 0.00011 36.0 21.1 190 225-420 34-250 (264)
394 COG3204 Uncharacterized protei 93.6 3.3 7.2E-05 37.5 13.8 127 80-222 75-210 (316)
395 COG0823 TolB Periplasmic compo 93.6 4.1 8.9E-05 39.7 15.8 155 266-430 187-357 (425)
396 KOG1897 Damage-specific DNA bi 93.5 12 0.00025 39.7 24.7 168 253-429 751-940 (1096)
397 KOG1897 Damage-specific DNA bi 93.3 13 0.00027 39.4 21.3 185 194-381 776-1001(1096)
398 PF02897 Peptidase_S9_N: Proly 92.9 9.9 0.00022 37.0 30.1 189 195-384 126-357 (414)
399 COG3391 Uncharacterized conser 92.8 9.6 0.00021 36.7 29.1 247 173-431 13-283 (381)
400 PF12234 Rav1p_C: RAVE protein 92.3 5.7 0.00012 40.5 15.0 97 326-429 41-154 (631)
401 PF12894 Apc4_WD40: Anaphase-p 92.2 0.76 1.6E-05 29.2 5.8 31 269-299 9-41 (47)
402 COG3391 Uncharacterized conser 92.1 12 0.00026 36.1 23.6 196 154-357 78-296 (381)
403 COG3823 Glutamine cyclotransfe 92.0 7.2 0.00016 33.5 13.7 148 203-353 55-213 (262)
404 smart00356 ZnF_C3H1 zinc finge 91.8 0.11 2.5E-06 28.4 1.5 23 57-79 3-26 (27)
405 PF00930 DPPIV_N: Dipeptidyl p 91.5 13 0.00028 35.4 23.6 239 171-421 23-348 (353)
406 PLN02153 epithiospecifier prot 91.5 13 0.00027 35.2 23.0 143 241-386 84-286 (341)
407 COG0823 TolB Periplasmic compo 91.3 15 0.00033 35.9 17.8 111 274-388 240-362 (425)
408 COG5167 VID27 Protein involved 91.3 13 0.00029 36.3 15.4 137 283-430 482-631 (776)
409 PF10313 DUF2415: Uncharacteri 91.0 1.3 2.7E-05 27.4 5.6 32 193-224 1-35 (43)
410 TIGR03548 mutarot_permut cycli 90.9 12 0.00025 35.1 15.1 111 277-387 69-197 (323)
411 PF10168 Nup88: Nuclear pore c 90.8 7.5 0.00016 40.6 14.5 42 190-231 144-189 (717)
412 PF07569 Hira: TUP1-like enhan 90.3 2.3 4.9E-05 37.4 9.1 69 317-386 13-97 (219)
413 KOG4499 Ca2+-binding protein R 90.1 12 0.00027 32.7 16.4 86 320-405 161-262 (310)
414 PF07569 Hira: TUP1-like enhan 90.1 2 4.3E-05 37.8 8.5 68 357-430 13-94 (219)
415 PLN02153 epithiospecifier prot 89.3 20 0.00042 33.9 20.3 106 278-387 83-228 (341)
416 PF12234 Rav1p_C: RAVE protein 89.0 8.5 0.00018 39.3 12.9 60 162-221 42-103 (631)
417 COG1520 FOG: WD40-like repeat 88.4 24 0.00052 33.7 23.8 185 205-394 69-278 (370)
418 KOG4460 Nuclear pore complex, 87.7 25 0.00053 34.7 14.2 121 163-302 54-201 (741)
419 PF05694 SBP56: 56kDa selenium 87.4 13 0.00029 35.8 12.3 144 283-428 89-274 (461)
420 KOG1898 Splicing factor 3b, su 87.4 42 0.0009 36.1 16.6 167 172-343 854-1047(1205)
421 PF00642 zf-CCCH: Zinc finger 87.2 0.16 3.5E-06 27.9 -0.2 23 58-80 3-27 (27)
422 TIGR03548 mutarot_permut cycli 87.0 26 0.00057 32.7 14.7 106 321-431 68-194 (323)
423 COG5276 Uncharacterized conser 87.0 24 0.00052 32.2 30.3 258 164-431 99-369 (370)
424 PF08728 CRT10: CRT10; InterP 87.0 42 0.0009 34.9 18.5 111 319-430 103-245 (717)
425 PF06977 SdiA-regulated: SdiA- 86.6 23 0.00051 31.7 20.6 188 163-381 36-247 (248)
426 KOG2280 Vacuolar assembly/sort 86.6 25 0.00054 36.2 14.2 174 171-353 64-255 (829)
427 PF14727 PHTB1_N: PTHB1 N-term 86.4 34 0.00073 33.3 26.9 135 203-343 36-203 (418)
428 PF11715 Nup160: Nucleoporin N 86.4 6.5 0.00014 40.0 10.7 74 280-353 157-257 (547)
429 PLN00033 photosystem II stabil 85.2 38 0.00082 32.8 17.5 143 195-341 241-396 (398)
430 PF14655 RAB3GAP2_N: Rab3 GTPa 85.1 11 0.00023 36.7 10.7 51 184-234 299-349 (415)
431 smart00564 PQQ beta-propeller 85.0 3.8 8.3E-05 23.2 5.0 27 326-352 6-32 (33)
432 KOG3522 Predicted guanine nucl 84.7 43 0.00094 35.0 14.9 134 162-299 548-697 (925)
433 KOG2714 SETA binding protein S 84.5 33 0.00073 32.9 13.2 140 190-349 216-376 (465)
434 COG5167 VID27 Protein involved 84.5 12 0.00026 36.7 10.4 136 242-384 478-632 (776)
435 PF10168 Nup88: Nuclear pore c 83.2 65 0.0014 33.9 22.0 90 193-301 85-181 (717)
436 TIGR03547 muta_rot_YjhT mutatr 82.5 44 0.00096 31.5 20.2 42 291-335 168-210 (346)
437 KOG1900 Nuclear pore complex, 82.3 20 0.00043 39.3 12.1 132 212-345 97-273 (1311)
438 PF14781 BBS2_N: Ciliary BBSom 82.2 24 0.00051 28.1 9.9 100 163-264 12-129 (136)
439 TIGR02276 beta_rpt_yvtn 40-res 81.5 9.2 0.0002 22.9 6.3 33 202-234 1-34 (42)
440 KOG2063 Vacuolar assembly/sort 81.4 77 0.0017 34.0 15.8 234 155-393 20-277 (877)
441 PF01011 PQQ: PQQ enzyme repea 80.9 4.7 0.0001 24.0 4.3 27 328-354 2-28 (38)
442 PF13570 PQQ_3: PQQ-like domai 80.6 6.1 0.00013 23.8 4.9 22 363-384 18-39 (40)
443 COG4590 ABC-type uncharacteriz 80.6 6.1 0.00013 38.0 6.9 171 185-388 213-390 (733)
444 PRK14131 N-acetylneuraminic ac 80.3 57 0.0012 31.3 20.6 40 292-334 190-230 (376)
445 PF11715 Nup160: Nucleoporin N 80.3 4.5 9.7E-05 41.1 6.6 41 193-233 215-259 (547)
446 PRK13684 Ycf48-like protein; P 79.6 56 0.0012 30.8 18.6 146 192-342 172-329 (334)
447 PF07676 PD40: WD40-like Beta 79.2 7.4 0.00016 23.1 4.9 24 405-428 13-38 (39)
448 TIGR03118 PEPCTERM_chp_1 conse 78.9 54 0.0012 30.2 20.7 198 155-358 28-293 (336)
449 TIGR03032 conserved hypothetic 78.6 50 0.0011 30.6 11.8 80 203-282 212-315 (335)
450 PF12341 DUF3639: Protein of u 78.1 6 0.00013 21.7 3.6 24 318-341 3-26 (27)
451 PF10313 DUF2415: Uncharacteri 77.5 13 0.00027 23.1 5.4 28 318-345 2-34 (43)
452 KOG2280 Vacuolar assembly/sort 77.0 57 0.0012 33.8 12.7 33 270-302 82-115 (829)
453 COG3490 Uncharacterized protei 76.8 60 0.0013 29.6 15.6 54 199-252 120-182 (366)
454 KOG1983 Tomosyn and related SN 75.7 1.1E+02 0.0024 33.7 15.5 31 193-223 36-66 (993)
455 PF12768 Rax2: Cortical protei 75.7 65 0.0014 29.5 12.2 56 169-225 14-75 (281)
456 KOG3616 Selective LIM binding 74.1 92 0.002 32.4 13.2 35 192-226 14-48 (1636)
457 KOG1916 Nuclear protein, conta 74.0 2.2 4.7E-05 44.4 2.2 60 325-385 194-256 (1283)
458 PF12341 DUF3639: Protein of u 74.0 11 0.00023 20.7 3.9 25 272-296 2-26 (27)
459 KOG2247 WD40 repeat-containing 73.4 0.52 1.1E-05 45.3 -2.1 138 197-378 39-182 (615)
460 PF13570 PQQ_3: PQQ-like domai 73.1 9.4 0.0002 22.9 4.2 25 321-345 16-40 (40)
461 PF05694 SBP56: 56kDa selenium 72.9 47 0.001 32.3 10.5 99 334-432 220-343 (461)
462 KOG2377 Uncharacterized conser 72.8 98 0.0021 30.2 13.4 112 190-301 64-187 (657)
463 PF14870 PSII_BNR: Photosynthe 72.0 84 0.0018 29.1 19.3 154 185-341 137-301 (302)
464 KOG1896 mRNA cleavage and poly 71.9 95 0.0021 34.1 13.3 146 283-430 1048-1212(1366)
465 KOG3630 Nuclear pore complex, 71.4 63 0.0014 35.2 11.8 99 286-385 119-229 (1405)
466 PF02333 Phytase: Phytase; In 71.0 1E+02 0.0022 29.6 22.3 183 202-386 66-292 (381)
467 KOG4791 Uncharacterized conser 70.9 0.84 1.8E-05 43.4 -1.3 26 59-84 62-88 (667)
468 KOG4460 Nuclear pore complex, 70.8 1.1E+02 0.0024 30.4 12.5 24 319-342 106-131 (741)
469 PF14761 HPS3_N: Hermansky-Pud 69.9 29 0.00063 30.1 7.8 73 255-331 1-76 (215)
470 PF08801 Nucleoporin_N: Nup133 69.1 42 0.00091 32.8 10.0 29 317-345 190-220 (422)
471 PF01011 PQQ: PQQ enzyme repea 68.7 17 0.00036 21.6 4.5 30 206-235 2-31 (38)
472 smart00564 PQQ beta-propeller 68.5 13 0.00028 20.9 4.0 25 205-229 7-31 (33)
473 KOG1900 Nuclear pore complex, 68.4 2E+02 0.0044 32.1 15.0 144 242-386 89-274 (1311)
474 TIGR03547 muta_rot_YjhT mutatr 67.8 1.1E+02 0.0024 28.8 19.0 40 336-375 168-210 (346)
475 PRK10115 protease 2; Provision 67.7 1.7E+02 0.0036 30.9 28.6 272 93-428 129-432 (686)
476 PRK14131 N-acetylneuraminic ac 67.2 1.2E+02 0.0026 29.0 19.5 40 293-335 314-353 (376)
477 PLN02193 nitrile-specifier pro 67.1 1.4E+02 0.003 29.7 23.4 66 322-387 325-413 (470)
478 PF12657 TFIIIC_delta: Transcr 65.0 29 0.00063 29.1 7.0 31 193-223 86-122 (173)
479 KOG1983 Tomosyn and related SN 64.7 65 0.0014 35.4 11.0 222 148-388 34-268 (993)
480 PF10433 MMS1_N: Mono-function 63.8 1.7E+02 0.0036 29.4 23.1 224 163-389 224-481 (504)
481 PF14727 PHTB1_N: PTHB1 N-term 63.6 1.5E+02 0.0033 28.9 27.5 172 204-386 145-362 (418)
482 TIGR03118 PEPCTERM_chp_1 conse 63.5 1.3E+02 0.0027 27.9 22.0 199 194-396 24-291 (336)
483 PF14779 BBS1: Ciliary BBSome 63.2 59 0.0013 29.2 8.7 66 315-381 175-255 (257)
484 PF08801 Nucleoporin_N: Nup133 62.4 1.6E+02 0.0034 28.7 14.6 22 409-431 198-219 (422)
485 COG5161 SFT1 Pre-mRNA cleavage 61.7 2.3E+02 0.0049 30.3 16.2 65 365-430 1101-1166(1319)
486 KOG1916 Nuclear protein, conta 59.7 15 0.00033 38.6 4.8 101 283-389 197-328 (1283)
487 COG3823 Glutamine cyclotransfe 58.6 1.2E+02 0.0027 26.3 12.0 91 171-262 68-160 (262)
488 KOG3522 Predicted guanine nucl 58.0 50 0.0011 34.6 8.1 115 271-386 581-699 (925)
489 PF01731 Arylesterase: Arylest 57.9 64 0.0014 23.5 6.7 50 375-431 35-84 (86)
490 PF10650 zf-C3H1: Putative zin 57.6 5.5 0.00012 20.9 0.7 20 60-79 2-22 (23)
491 KOG1896 mRNA cleavage and poly 57.2 1.7E+02 0.0037 32.4 11.9 136 205-344 1047-1213(1366)
492 PF08728 CRT10: CRT10; InterP 56.5 1.4E+02 0.0031 31.2 11.1 72 270-343 162-245 (717)
493 KOG3616 Selective LIM binding 55.4 2.2E+02 0.0047 29.9 11.8 67 270-342 13-81 (1636)
494 PF14779 BBS1: Ciliary BBSome 55.1 50 0.0011 29.7 6.8 59 367-428 196-255 (257)
495 KOG2247 WD40 repeat-containing 55.0 2 4.4E-05 41.5 -1.9 114 92-227 36-152 (615)
496 KOG2377 Uncharacterized conser 54.7 2.2E+02 0.0048 28.0 13.5 140 274-420 25-173 (657)
497 KOG1898 Splicing factor 3b, su 52.8 3.5E+02 0.0075 29.7 18.1 172 253-431 854-1048(1205)
498 PF10647 Gmad1: Lipoprotein Lp 52.5 1.8E+02 0.0038 26.2 17.3 206 82-339 14-232 (253)
499 PF12657 TFIIIC_delta: Transcr 52.4 1.1E+02 0.0025 25.5 8.5 29 272-300 86-122 (173)
500 PRK13684 Ycf48-like protein; P 51.7 2.1E+02 0.0046 26.9 24.4 140 241-383 182-330 (334)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-47 Score=332.39 Aligned_cols=317 Identities=21% Similarity=0.358 Sum_probs=273.1
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEee--ccC
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHW--LSG 162 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 162 (432)
.+.||.+.|.+++|+|+|++|||||.|-|+|+||+.+....... ..|..-..|..| .+.
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-------------------KgH~~WVlcvawsPDgk 170 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-------------------KGHKNWVLCVAWSPDGK 170 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-------------------cCCccEEEEEEECCCcc
Confidence 67999999999999999999999999999999987654331111 122223445554 555
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecC-----CCCEEEEEeCCCcEEEEeCCCCceeEEEe-CCCce
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-----RSDKLYSGSRDGTVQLWDCHTGQSASVIN-LGAEV 236 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~-----~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~ 236 (432)
.+++|+.||.|++||..++.+....|.+|+..|++++|.| ..++||+++.||+|+|||+..++++..+. +..++
T Consensus 171 ~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~V 250 (480)
T KOG0271|consen 171 KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASV 250 (480)
T ss_pred hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccce
Confidence 9999999999999999999888999999999999999954 67899999999999999999999998887 55678
Q ss_pred eeEEECC-CEEEE-EcCCeEEEEEccCCceE-eecCCcCCEEEEEEcC--------------------------------
Q 014003 237 GSLICEG-PWVFV-GMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVAN-------------------------------- 281 (432)
Q Consensus 237 ~~~~~~~-~~l~~-~~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~-------------------------------- 281 (432)
.|+...| .+++. +.|++|++|+...+... .+.+|...|+.++.+.
T Consensus 251 TCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~ 330 (480)
T KOG0271|consen 251 TCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA 330 (480)
T ss_pred EEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence 8888764 35544 48999999999988754 6788888898888771
Q ss_pred ------CEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEec
Q 014003 282 ------EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN 353 (432)
Q Consensus 282 ------~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~ 353 (432)
..+++|+.|.++.+|+....+ +++..+.+|..-|..+.|+ ++++|++|.|..|++||.++|+.+.+|.
T Consensus 331 ~~~~~~erlVSgsDd~tlflW~p~~~k----kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR 406 (480)
T KOG0271|consen 331 VLKDSGERLVSGSDDFTLFLWNPFKSK----KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR 406 (480)
T ss_pred hhccCcceeEEecCCceEEEecccccc----cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh
Confidence 149999999999999977664 4678889999999999997 9999999999999999999999999999
Q ss_pred CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 354 GHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 354 ~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
+|-++|..++|+ .++|++||.|.++++||+++.+....+.+|..++..+.+ +|||+ .+++|+.|..+++|.
T Consensus 407 GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDw----spDG~-rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 407 GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDW----SPDGQ-RVASGGKDKVLRLWR 479 (480)
T ss_pred hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEe----cCCCc-eeecCCCceEEEeec
Confidence 999999999999 469999999999999999999988888899888755555 99999 999999999999995
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-41 Score=302.77 Aligned_cols=276 Identities=24% Similarity=0.347 Sum_probs=245.5
Q ss_pred CCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCC--ceEEeecc-C-
Q 014003 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHWLS-G- 162 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~- 162 (432)
.|-..+|..+.||.|+..|||||.+|.++||+.+... ....+.+|... .+.|+|.. +
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-------------------~~~~l~gH~~~v~~~~fhP~~~~~ 232 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-------------------LLQTLRGHTSRVGAAVFHPVDSDL 232 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-------------------eeEEEeccccceeeEEEccCCCcc
Confidence 5666789999999999999999999999999654431 22334444444 44456652 3
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEEC
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICE 242 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~ 242 (432)
.+++++.||++++|++++. .++..|.+|...|..++|+|+|++|+|++.|.+-++||+++++.+.
T Consensus 233 ~lat~s~Dgtvklw~~~~e-~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL-------------- 297 (459)
T KOG0272|consen 233 NLATASADGTVKLWKLSQE-TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL-------------- 297 (459)
T ss_pred ceeeeccCCceeeeccCCC-cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhH--------------
Confidence 8999999999999999887 8899999999999999999999999999999999999999886543
Q ss_pred CCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeE
Q 014003 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (432)
Q Consensus 243 ~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 320 (432)
...+|...|.+++|+++ ++++|+.|..-++||++++. .+..+.+|..+|.
T Consensus 298 -----------------------~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-----~im~L~gH~k~I~ 349 (459)
T KOG0272|consen 298 -----------------------LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-----CIMFLAGHIKEIL 349 (459)
T ss_pred -----------------------hhcccccccceeEecCCCceeeccCccchhheeecccCc-----EEEEeccccccee
Confidence 34789999999999999 99999999999999999986 4788899999999
Q ss_pred EEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceeEEeec
Q 014003 321 CLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTH 395 (432)
Q Consensus 321 ~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 395 (432)
+++|+ |..||||+.|++++|||++..+++.++.+|..-|..+.+. |.+|+|++.|++++||..++..+++.+.+|
T Consensus 350 ~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH 429 (459)
T KOG0272|consen 350 SVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH 429 (459)
T ss_pred eEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC
Confidence 99998 8899999999999999999999999999999999999998 689999999999999999999999999999
Q ss_pred cCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 396 NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 396 ~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
...+-.+.+ +|++. .+++++.|.++++|.
T Consensus 430 e~kV~s~Di----s~d~~-~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 430 EGKVISLDI----SPDSQ-AIATSSFDRTIKLWR 458 (459)
T ss_pred ccceEEEEe----ccCCc-eEEEeccCceeeecc
Confidence 999877777 89999 999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-39 Score=286.24 Aligned_cols=274 Identities=24% Similarity=0.367 Sum_probs=235.9
Q ss_pred eecCCCceE--EeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 014003 148 ERTTPKNVC--YHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ 225 (432)
Q Consensus 148 ~~~~~~~~~--~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~ 225 (432)
..|....+| |.+.+..+++|+.|.++|+||+.+. .+..+.++|...|.+++|+|||+.||||+.||+|++||.++|+
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te-Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE-TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC-CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 344444555 5555669999999999999999988 7899999999999999999999999999999999999999988
Q ss_pred eeEE-Ee-CCCceeeEEE-------CCCEEE-EEcCCeEEEEEccCCce-EeecCCcCCEEEEEEcCC-EEEEEECCCcE
Q 014003 226 SASV-IN-LGAEVGSLIC-------EGPWVF-VGMPNVVKAWHIESSAE-FSLDGPVGEVYSMVVANE-MLFAGAQDGNI 293 (432)
Q Consensus 226 ~~~~-~~-~~~~~~~~~~-------~~~~l~-~~~~~~i~vwd~~~~~~-~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i 293 (432)
++.. +. +...+.++.. ....++ ++.||.++|||+..+.. +.+.+|..+|+|+.|.++ ++++|+.|++|
T Consensus 191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtI 270 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTI 270 (480)
T ss_pred cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceE
Confidence 6643 33 3445666553 334444 55899999999998875 578899999999999977 99999999999
Q ss_pred EEEECCCCCCCccccceeeeccccCeEEEEEe-------------CC-------------------------EEEEEeCC
Q 014003 294 LVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-------------GK-------------------------RLYSGSMD 335 (432)
Q Consensus 294 ~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-------------~~-------------------------~l~sgs~d 335 (432)
++|+...+. +.+++++|...|+.|+.+ ++ .|++|+.|
T Consensus 271 kvw~a~dG~-----~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 271 KVWRALDGK-----LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred EEEEccchh-----HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 999998864 588899999999988764 33 39999999
Q ss_pred CeEEEEECCC-CceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCC
Q 014003 336 NTIRVWDLDT-LEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDG 412 (432)
Q Consensus 336 g~I~vwd~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g 412 (432)
.++.+|+... .+++..+.+|..-|..+.|+ +.+++++|.|..|++||.++++.+..+.+|-..+..+++ +.|.
T Consensus 346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw----saDs 421 (480)
T KOG0271|consen 346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW----SADS 421 (480)
T ss_pred ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe----ccCc
Confidence 9999999754 45889999999999999999 689999999999999999999999999999888877777 7888
Q ss_pred CcEEEEEeCCCeEEEeeCCC
Q 014003 413 NPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 413 ~~~l~sg~~Dg~I~iwdl~s 432 (432)
+ +|++|+.|.++++||+++
T Consensus 422 R-LlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 422 R-LLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred c-EEEEcCCCceEEEEEeee
Confidence 8 999999999999999874
No 4
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.8e-37 Score=275.73 Aligned_cols=323 Identities=18% Similarity=0.249 Sum_probs=267.2
Q ss_pred CCCCCCCCCCCCCCCce-ecCCCCCCCcccccccCCCCCCCCC----CcccccCCCCCCCCCceeeeecCCCceEEeec-
Q 014003 87 SNHKKSPPSYNCPKNNV-RVSSGSEEGTTHVQNRENPDRTVPN----KSSLDCSTGSDDSGSKRTLERTTPKNVCYHWL- 160 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~-~las~~~Dg~i~iW~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 160 (432)
-+|+.+|.+.+|+|-.. .+|+|+.|-+.|+|++......... ..+...... ......+..|+.|+
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~---------s~~~nkdVT~L~Wn~ 245 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGK---------SVPSNKDVTSLDWNN 245 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcc---------cCCccCCcceEEecC
Confidence 45999999999988877 8999999999999988762111000 000000000 01122357899998
Q ss_pred -cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCce-ee
Q 014003 161 -SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV-GS 238 (432)
Q Consensus 161 -~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~-~~ 238 (432)
++.+++|..||.+++|+... ..+.+|..|+++|.+|.|+..|+||++++.|+++.+||..+++....+...... ..
T Consensus 246 ~G~~LatG~~~G~~riw~~~G--~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lD 323 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKDG--NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALD 323 (524)
T ss_pred CCCeEEEeecCcEEEEEecCc--hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccc
Confidence 66999999999999999866 457789999999999999999999999999999999999999999999876655 33
Q ss_pred EE--ECCCEEEEEcCCeEEEEEccCCce-EeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeee
Q 014003 239 LI--CEGPWVFVGMPNVVKAWHIESSAE-FSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLK 313 (432)
Q Consensus 239 ~~--~~~~~l~~~~~~~i~vwd~~~~~~-~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~ 313 (432)
+. .+..+...+.|+.|+++.+..... .++.+|.++|.++.|+|. +|++++.|+++++|...... ....+.
T Consensus 324 VdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-----~~~~l~ 398 (524)
T KOG0273|consen 324 VDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-----SVHDLQ 398 (524)
T ss_pred eEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc-----chhhhh
Confidence 44 567778888999999999987664 477889999999999987 99999999999999987764 467788
Q ss_pred ccccCeEEEEEe-----------CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEE
Q 014003 314 GHTRPVTCLAVG-----------GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKV 380 (432)
Q Consensus 314 ~h~~~v~~l~~~-----------~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~i 380 (432)
+|...|..+.|+ +..+++++.|++|++||+..+.++++|..|..+|++++|+ +.|+|+|+.||.|.+
T Consensus 399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~i 478 (524)
T KOG0273|consen 399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHI 478 (524)
T ss_pred hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEe
Confidence 999999999884 5679999999999999999999999999999999999999 899999999999999
Q ss_pred EEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 381 WIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 381 wd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
|+.++++.++....... .+.++|+.+|. .|..+-.||.+++-|++
T Consensus 479 ws~~~~~l~~s~~~~~~-----Ifel~Wn~~G~-kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 479 WSTKTGKLVKSYQGTGG-----IFELCWNAAGD-KLGACASDGSVCVLDLR 523 (524)
T ss_pred ccccchheeEeecCCCe-----EEEEEEcCCCC-EEEEEecCCCceEEEec
Confidence 99999887776655332 45566788998 67777789999999875
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.9e-37 Score=261.27 Aligned_cols=281 Identities=19% Similarity=0.271 Sum_probs=244.5
Q ss_pred CCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCc
Q 014003 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (432)
.+|+||...|.++.|++|.++++|+|.||.+.|||.-+.... ..-.+........++.|.+..
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-----------------haipl~s~WVMtCA~sPSg~~ 111 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-----------------HAIPLPSSWVMTCAYSPSGNF 111 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-----------------eEEecCceeEEEEEECCCCCe
Confidence 488999999999999999999999999999999974432210 001112223345678888899
Q ss_pred eeeCCCCCeEEEEeCCCC-----cEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceee
Q 014003 164 CVKGDECRFWHSWFCGEG-----FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS 238 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~-----~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~ 238 (432)
++.|+-|....||++.+. .+....+.+|++.+.++.|-+ ...|+|+|.|.+..+||+++++.+..+
T Consensus 112 VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f-------- 182 (343)
T KOG0286|consen 112 VACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVF-------- 182 (343)
T ss_pred EEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEe--------
Confidence 999999999999999632 245667999999999999976 567999999999999999999988766
Q ss_pred EEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcC-C--EEEEEECCCcEEEEECCCCCCCccccceeeecc
Q 014003 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN-E--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH 315 (432)
Q Consensus 239 ~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~-~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h 315 (432)
.+|.+.|.++.+.| + .+++|+.|+..++||++.+. .++.+.+|
T Consensus 183 -----------------------------~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-----c~qtF~gh 228 (343)
T KOG0286|consen 183 -----------------------------HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-----CVQTFEGH 228 (343)
T ss_pred -----------------------------cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-----eeEeeccc
Confidence 58999999999998 3 99999999999999999985 58999999
Q ss_pred ccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCC--CCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCce
Q 014003 316 TRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGH--TDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNL 389 (432)
Q Consensus 316 ~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~--~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~ 389 (432)
+..|.++.|. |.-+++|+.|++.++||++..+.+..+... ..+|++++|+ |++|++|..|.++.+||.-.++.+
T Consensus 229 esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~v 308 (343)
T KOG0286|consen 229 ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERV 308 (343)
T ss_pred ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceE
Confidence 9999999995 999999999999999999999998888633 3468999998 899999999999999999999999
Q ss_pred eEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 390 EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
..+.+|...++.+.. +|||. .+++|+.|.++|||.
T Consensus 309 g~L~GHeNRvScl~~----s~DG~-av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 309 GVLAGHENRVSCLGV----SPDGM-AVATGSWDSTLRIWA 343 (343)
T ss_pred EEeeccCCeeEEEEE----CCCCc-EEEecchhHheeecC
Confidence 999999999999998 89999 999999999999994
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-36 Score=255.20 Aligned_cols=290 Identities=20% Similarity=0.257 Sum_probs=240.0
Q ss_pred CCCCCCCCCCCCCCCCCC-ceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeee--ecCCCceEEeec
Q 014003 84 LPVSNHKKSPPSYNCPKN-NVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLE--RTTPKNVCYHWL 160 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~~-g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 160 (432)
-+++||++.|.+++..+. -..+.+++.|.++.+|++..-.. ......+.+. .|....+...+.
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~--------------~~G~~~r~~~GHsH~v~dv~~s~d 74 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI--------------KYGVPVRRLTGHSHFVSDVVLSSD 74 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc--------------ccCceeeeeeccceEecceEEccC
Confidence 378999999999999666 56789999999999998665411 0111223332 334456777888
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI 240 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~ 240 (432)
+...++++.|+++++||+.++ +..+.|.||...|.+++|++|.+.++|||.|++|++||.... +..++.
T Consensus 75 g~~alS~swD~~lrlWDl~~g-~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~--------- 143 (315)
T KOG0279|consen 75 GNFALSASWDGTLRLWDLATG-ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIH--------- 143 (315)
T ss_pred CceEEeccccceEEEEEecCC-cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEe---------
Confidence 889999999999999999999 889999999999999999999999999999999999998744 333221
Q ss_pred ECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC----EEEEEECCCcEEEEECCCCCCCccccceeeeccc
Q 014003 241 CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT 316 (432)
Q Consensus 241 ~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~ 316 (432)
...+.+.|.++.|+|+ +|++++.|++|++||+++- ++...+.+|+
T Consensus 144 --------------------------~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-----~l~~~~~gh~ 192 (315)
T KOG0279|consen 144 --------------------------EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-----QLRTTFIGHS 192 (315)
T ss_pred --------------------------cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-----chhhcccccc
Confidence 1223778999999998 8999999999999999985 4678888999
Q ss_pred cCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceeEEe
Q 014003 317 RPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 317 ~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (432)
+.++.++++ |...++|+.||.+.+||++.++.+..+. |...|.+++|+ +++.+++..+..|+|||+.+...+..+.
T Consensus 193 ~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 193 GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELK 271 (315)
T ss_pred ccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcc
Confidence 999999997 9999999999999999999999988886 88899999999 5777788888889999999988777665
Q ss_pred eccCC-----cceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 394 THNED-----HGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 394 ~~~~~-----~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
..... ....++.++|++||. .|++|-.|+.|++|.+.
T Consensus 272 ~d~~g~s~~~~~~~clslaws~dG~-tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 272 LDGIGPSSKAGDPICLSLAWSADGQ-TLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccccccCCcEEEEEEEcCCCc-EEEeeecCCcEEEEEee
Confidence 43222 245677778899999 89999999999999874
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.6e-38 Score=279.65 Aligned_cols=253 Identities=22% Similarity=0.308 Sum_probs=219.6
Q ss_pred eeeeeeecCccCCCCCccccccCCCCCCCCCCCCCCCCCCCCC--ceecCCCCCCCcccccccCCCCCCCCCCcccccCC
Q 014003 59 VLCVYFLEGRCNRNPCRFAHTESQTLPVSNHKKSPPSYNCPKN--NVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCST 136 (432)
Q Consensus 59 ~~~~~~~~~~~~~~p~~~l~~~~~~~~~~gh~~~v~~~~~s~~--g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~ 136 (432)
-+|..|....|+ . ..+|.||+..|.++.|+|. +.-+||++.||++++|+++.......-..+
T Consensus 197 G~~kvW~~~~~~-----~------~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH----- 260 (459)
T KOG0272|consen 197 GLVKVWSVPQCN-----L------LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGH----- 260 (459)
T ss_pred CceeEeecCCcc-----e------eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcc-----
Confidence 356667665442 2 3488999999999999887 678999999999999987664321111111
Q ss_pred CCCCCCCceeeeecCCCceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcE
Q 014003 137 GSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTV 216 (432)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v 216 (432)
......+.|+|.+..+.+++.|.+.++||+.++ ..+....||...|.+++|.+||.+++||+.|..-
T Consensus 261 ------------~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk-~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~ 327 (459)
T KOG0272|consen 261 ------------LARVSRVAFHPSGKFLGTASFDSTWRLWDLETK-SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLG 327 (459)
T ss_pred ------------hhhheeeeecCCCceeeecccccchhhcccccc-hhhHhhcccccccceeEecCCCceeeccCccchh
Confidence 112257899999999999999999999999988 5566678999999999999999999999999999
Q ss_pred EEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEE
Q 014003 217 QLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNIL 294 (432)
Q Consensus 217 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~ 294 (432)
+|||+++|.++..+ .+|..+|.++.|+|+ .+++|+.|++++
T Consensus 328 RvWDlRtgr~im~L-------------------------------------~gH~k~I~~V~fsPNGy~lATgs~Dnt~k 370 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFL-------------------------------------AGHIKEILSVAFSPNGYHLATGSSDNTCK 370 (459)
T ss_pred heeecccCcEEEEe-------------------------------------cccccceeeEeECCCceEEeecCCCCcEE
Confidence 99999999988655 689999999999999 899999999999
Q ss_pred EEECCCCCCCccccceeeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEE
Q 014003 295 VWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYL 369 (432)
Q Consensus 295 ~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l 369 (432)
|||++... .+..+.+|.+-|+.+.|+ |.+|++++.|++++||..+++.+++++.||.+.|.++..+ +++|
T Consensus 371 VWDLR~r~-----~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i 445 (459)
T KOG0272|consen 371 VWDLRMRS-----ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAI 445 (459)
T ss_pred Eeeecccc-----cceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceE
Confidence 99999865 488899999999999997 8999999999999999999999999999999999999988 7899
Q ss_pred EEEeCCCcEEEEE
Q 014003 370 LSCSLDNTIKVWI 382 (432)
Q Consensus 370 ~s~s~dg~i~iwd 382 (432)
++++.|.++++|.
T Consensus 446 ~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 446 ATSSFDRTIKLWR 458 (459)
T ss_pred EEeccCceeeecc
Confidence 9999999999995
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-35 Score=247.21 Aligned_cols=286 Identities=17% Similarity=0.268 Sum_probs=236.4
Q ss_pred CceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCCCCeEEEEeCCC
Q 014003 101 NNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGE 180 (432)
Q Consensus 101 ~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw~~~~ 180 (432)
+--+|||+|+|-|||+|...++.... +. .-.+...+..+..+....+++++ ...||+||+.+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~r----Ti-------------qh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S 70 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSR----TI-------------QHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNS 70 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEE----EE-------------ecCccceeeEEEcCCcchhhhcc-CCeeEEEEccC
Confidence 34579999999999999766655311 00 00112225667777777766665 36799999977
Q ss_pred CcE-EEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE---CCCEEEEEcCCeEEE
Q 014003 181 GFT-MLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC---EGPWVFVGMPNVVKA 256 (432)
Q Consensus 181 ~~~-~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~i~v 256 (432)
+.. ++.++.+|++.|+++.|..+|+.++|||+||+++|||++...+.+.+++..++.++.. .+.++++..+|.|++
T Consensus 71 ~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irv 150 (311)
T KOG0315|consen 71 NNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRV 150 (311)
T ss_pred CCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEE
Confidence 644 8999999999999999999999999999999999999999999999999999998884 455666779999999
Q ss_pred EEccCCceE--eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCC-CccccceeeeccccCeEEEEEe--CCEE
Q 014003 257 WHIESSAEF--SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQ-NPFQLAALLKGHTRPVTCLAVG--GKRL 329 (432)
Q Consensus 257 wd~~~~~~~--~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~l~~~--~~~l 329 (432)
||+...... ........|.++.+.++ +++++...|..++|++..... .+++++..++.|+.-+..+.++ +++|
T Consensus 151 WDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 151 WDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred EEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence 999987543 33455578889998888 999999999999999877532 3467888899999999988886 8999
Q ss_pred EEEeCCCeEEEEECCCC-ceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEE
Q 014003 330 YSGSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLAL 404 (432)
Q Consensus 330 ~sgs~dg~I~vwd~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 404 (432)
++++.|.+++||+.++. +....+++|...+..++|+ +.||++++.|+.+++||+..++.+....+|.....++++
T Consensus 231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred EeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 99999999999999988 7788899999999999999 799999999999999999999999888888765544443
No 9
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5e-37 Score=267.24 Aligned_cols=266 Identities=24% Similarity=0.383 Sum_probs=229.8
Q ss_pred CCCceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEE
Q 014003 151 TPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI 230 (432)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~ 230 (432)
.....|..+....+++|..|.+|+|||.++- .+...|.||++.|.|+.|. .+.+++||.|.+|++||+++++++.++
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~-~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSL-ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEeccccH-HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHH
Confidence 3457899999999999999999999999776 7788899999999999985 569999999999999999999999887
Q ss_pred eCC-CceeeEEE-CCCEEEEEcCCeEEEEEccCCceE----eecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCC
Q 014003 231 NLG-AEVGSLIC-EGPWVFVGMPNVVKAWHIESSAEF----SLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQN 304 (432)
Q Consensus 231 ~~~-~~~~~~~~-~~~~l~~~~~~~i~vwd~~~~~~~----~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~ 304 (432)
-++ +.+..+.. ++.++.++.|..+.+||+.....+ .+.+|...|..+.|+..++++++.|.+|++|++.+..
T Consensus 274 ihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~e-- 351 (499)
T KOG0281|consen 274 IHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCE-- 351 (499)
T ss_pred hhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEecccee--
Confidence 755 44555554 555666779999999999988754 4679999999999999999999999999999999864
Q ss_pred ccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcC
Q 014003 305 PFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMT 384 (432)
Q Consensus 305 ~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~ 384 (432)
.++++.+|...|.|+.+.++++++|++|.+|++||+..|.+++.++||..-|.++.|+++.+++|+.||+|++||+.
T Consensus 352 ---fvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 352 ---FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred ---eehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCce---------eEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 385 EEGNL---------EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 385 ~~~~~---------~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
..... .....|.+.+..+.| |.. -+++++.|.+|.|||+-
T Consensus 429 aaldpra~~~~~Cl~~lv~hsgRVFrLQF------D~f-qIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 429 AALDPRAPASTLCLRTLVEHSGRVFRLQF------DEF-QIISSSHDDTILIWDFL 477 (499)
T ss_pred cccCCcccccchHHHhhhhccceeEEEee------cce-EEEeccCCCeEEEEEcC
Confidence 76543 223334444444444 333 68888899999999974
No 10
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.4e-36 Score=281.98 Aligned_cols=324 Identities=23% Similarity=0.343 Sum_probs=235.9
Q ss_pred CC-CCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccC--c
Q 014003 87 SN-HKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG--N 163 (432)
Q Consensus 87 ~g-h~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 163 (432)
++ |+.+|.-++|.|.|..||+||.||.++|||+.....+..... .++.. ..++|++... .
T Consensus 101 Ka~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG----~gGvV-------------ssl~F~~~~~~~l 163 (775)
T KOG0319|consen 101 KAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKG----HGGVV-------------SSLLFHPHWNRWL 163 (775)
T ss_pred hhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecC----CCceE-------------EEEEeCCccchhh
Confidence 45 999999999999999999999999999999877654211111 11111 3455665554 6
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE--
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC-- 241 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~-- 241 (432)
+++|+.|+.+++||+.+...++.++..|.+.|++++|++|+..+++++.|..+.+||+.+.+..++.+..+.+.++..
T Consensus 164 L~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~ 243 (775)
T KOG0319|consen 164 LASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLR 243 (775)
T ss_pred eeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEec
Confidence 899999999999999877566888999999999999999999999999999999999976554444443322222210
Q ss_pred C------CCEEEEEcCCeEEEEE---------------------------------------------------------
Q 014003 242 E------GPWVFVGMPNVVKAWH--------------------------------------------------------- 258 (432)
Q Consensus 242 ~------~~~l~~~~~~~i~vwd--------------------------------------------------------- 258 (432)
+ ..++.+|.++.++.||
T Consensus 244 ~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~n 323 (775)
T KOG0319|consen 244 EELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYN 323 (775)
T ss_pred hhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCc
Confidence 0 0112222233333332
Q ss_pred -----------------------------ccCCceEeecCCcCCEEEEE-EcCC-EEEEEECCCcEEEEEC---------
Q 014003 259 -----------------------------IESSAEFSLDGPVGEVYSMV-VANE-MLFAGAQDGNILVWKG--------- 298 (432)
Q Consensus 259 -----------------------------~~~~~~~~~~~~~~~v~~l~-~~~~-~l~~g~~dg~i~~wd~--------- 298 (432)
..+.......+|...|.++. +... +|++|+.|.++++|.+
T Consensus 324 dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~ 403 (775)
T KOG0319|consen 324 DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLC 403 (775)
T ss_pred hhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhh
Confidence 22222223345555555555 2222 5555666666666644
Q ss_pred --------------------------------------CCCCCCccccc----eeeeccccCeEEEEEe--CCEEEEEeC
Q 014003 299 --------------------------------------IPNTQNPFQLA----ALLKGHTRPVTCLAVG--GKRLYSGSM 334 (432)
Q Consensus 299 --------------------------------------~~~~~~~~~~~----~~~~~h~~~v~~l~~~--~~~l~sgs~ 334 (432)
...+.....+. .....|...|+|++++ .+.+||||.
T Consensus 404 ~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq 483 (775)
T KOG0319|consen 404 VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ 483 (775)
T ss_pred hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccc
Confidence 33111111111 1345789999999997 789999999
Q ss_pred CCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCC
Q 014003 335 DNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDG 412 (432)
Q Consensus 335 dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g 412 (432)
|.+.+||+++......++.+|...+.++.|+ ++.++|+|.|++|+||.+.+..+++.+.+|...+....| -.+|
T Consensus 484 DktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F----~~~~ 559 (775)
T KOG0319|consen 484 DKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASF----IRNG 559 (775)
T ss_pred ccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeee----eeCC
Confidence 9999999999999999999999999999999 679999999999999999999999999999887766665 4677
Q ss_pred CcEEEEEeCCCeEEEeeCCC
Q 014003 413 NPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 413 ~~~l~sg~~Dg~I~iwdl~s 432 (432)
+ .|++++.||-|++|++++
T Consensus 560 ~-qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 560 K-QLISAGADGLIKLWNIKT 578 (775)
T ss_pred c-EEEeccCCCcEEEEeccc
Confidence 7 799999999999999875
No 11
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.7e-35 Score=245.63 Aligned_cols=291 Identities=22% Similarity=0.287 Sum_probs=232.2
Q ss_pred CCCCCCCCCCCCCCCCCC-ceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccC
Q 014003 84 LPVSNHKKSPPSYNCPKN-NVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG 162 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~~-g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (432)
..++||++.+++++|+|. |..|||+|.|..||||++.++.. +.....+ +. + ++.....++..|.+.
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-~~ck~vl------d~-~-----hkrsVRsvAwsp~g~ 74 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-WTCKTVL------DD-G-----HKRSVRSVAWSPHGR 74 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-EEEEEec------cc-c-----chheeeeeeecCCCc
Confidence 467899999999999999 99999999999999997665221 1000000 00 0 122235677888999
Q ss_pred ceeeCCCCCeEEEEeCC-CCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE
Q 014003 163 NCVKGDECRFWHSWFCG-EGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~-~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~ 241 (432)
.+++|+.|.++-||.-. ..++++.+|.||+..|.+++|+++|++|||++.|+.|-||.+..+......
T Consensus 75 ~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~----------- 143 (312)
T KOG0645|consen 75 YLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI----------- 143 (312)
T ss_pred EEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE-----------
Confidence 99999999999999875 457899999999999999999999999999999999999998755433222
Q ss_pred CCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCe
Q 014003 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (432)
Q Consensus 242 ~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v 319 (432)
-.++.|...|..+.|+|. +|+++++|.+|++|+-..+.. +.+.+++.+|...|
T Consensus 144 -----------------------aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~ddd--W~c~~tl~g~~~TV 198 (312)
T KOG0645|consen 144 -----------------------AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDD--WECVQTLDGHENTV 198 (312)
T ss_pred -----------------------eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCC--eeEEEEecCccceE
Confidence 135789999999999995 999999999999998774322 78899999999999
Q ss_pred EEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCC--Cc-----ee
Q 014003 320 TCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEE--GN-----LE 390 (432)
Q Consensus 320 ~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~-----~~ 390 (432)
.+++|+ |..|++++.|++++||-..+.-. ..|...+..+.+.+..|++++.|+.|++|.-... ++ ..
T Consensus 199 W~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~ 274 (312)
T KOG0645|consen 199 WSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAK 274 (312)
T ss_pred EEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHh
Confidence 999998 89999999999999998663211 2366778888888889999999999999976542 11 11
Q ss_pred EEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 391 VAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
....|...++.+.+ .|.+...|++|++||.|++|.+.
T Consensus 275 ~~~aHe~dVNsV~w----~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 275 KEGAHEVDVNSVQW----NPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred hhcccccccceEEE----cCCCCCceeecCCCceEEEEEec
Confidence 22346667777777 78655589999999999999975
No 12
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-35 Score=262.06 Aligned_cols=292 Identities=19% Similarity=0.298 Sum_probs=241.3
Q ss_pred CccCC--CCCccccccCCCCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCc
Q 014003 67 GRCNR--NPCRFAHTESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSK 144 (432)
Q Consensus 67 ~~~~~--~p~~~l~~~~~~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (432)
-.|.| +||+-.+ .+..|+++||-+.||++|+||||++.|.|.-||.+
T Consensus 205 h~c~~~qip~qt~q------il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v------------------------- 253 (519)
T KOG0293|consen 205 HFCGRLQIPSQTWQ------ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIV------------------------- 253 (519)
T ss_pred cccCcccCCchhhh------hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEE-------------------------
Confidence 34455 5666544 67889999999999999999999999999999932
Q ss_pred eeeeecCCCceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 014003 145 RTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG 224 (432)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~ 224 (432)
++|.. .+...++.+|..+|.-+.|+||.++|++++.|..+.+||+.+|
T Consensus 254 ------------------------------~~d~~--~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 254 ------------------------------VYDVH--FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG 301 (519)
T ss_pred ------------------------------ecCcc--eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence 22222 3778899999999999999999999999999999999999999
Q ss_pred ceeEEEeCC--CceeeEE--ECCCEEEEE-cCCeEEEEEccCCceEeecCCc-CCEEEEEEcCC--EEEEEECCCcEEEE
Q 014003 225 QSASVINLG--AEVGSLI--CEGPWVFVG-MPNVVKAWHIESSAEFSLDGPV-GEVYSMVVANE--MLFAGAQDGNILVW 296 (432)
Q Consensus 225 ~~~~~~~~~--~~~~~~~--~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~-~~v~~l~~~~~--~l~~g~~dg~i~~w 296 (432)
.....++.. ..+.+.. +++..+++| .|+.+..||++.+.....++.. ..|.+++..+| .+++.+.|..|++|
T Consensus 302 d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~ 381 (519)
T KOG0293|consen 302 DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLY 381 (519)
T ss_pred hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeee
Confidence 999888866 3444444 577766655 8999999999988765555443 56889998887 88888899999999
Q ss_pred ECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEE--Ec---CCEE
Q 014003 297 KGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLL--CW---DQYL 369 (432)
Q Consensus 297 d~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~--~~---~~~l 369 (432)
+..+... ..+.....+|++++.+ ++++++.-.+..|++||++..+.++.+.||...-.-+. |- ..++
T Consensus 382 ~~e~~~d------r~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fi 455 (519)
T KOG0293|consen 382 NREARVD------RGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFI 455 (519)
T ss_pred chhhhhh------hccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceE
Confidence 9877532 1133346789999887 88899999999999999999999999999988643333 33 3799
Q ss_pred EEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 370 LSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 370 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
++||+|+.|+||+..+++.+..+.+|...+.++++ +|....++|++++||+||||...
T Consensus 456 aSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVsw----NP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 456 ASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSW----NPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred EecCCCceEEEEEccCCceeEeecCCcceeeEEec----CCCCHHHhhccCCCCeEEEecCC
Confidence 99999999999999999999999999988888887 89888899999999999999764
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.8e-36 Score=266.81 Aligned_cols=295 Identities=22% Similarity=0.371 Sum_probs=243.2
Q ss_pred eeeecCccCCCCCccccccCCCCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCC
Q 014003 62 VYFLEGRCNRNPCRFAHTESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDS 141 (432)
Q Consensus 62 ~~~~~~~~~~~p~~~l~~~~~~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~ 141 (432)
..|.-.+|+.++-+|.|..... -+.+|..+.|.|+|+.|.+|+..|...|||...-
T Consensus 73 ~~~~~dp~~~~~tKf~h~s~NK-----vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f------------------- 128 (464)
T KOG0284|consen 73 SLYLDDPSSAFTTKFVHTSSNK-----VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF------------------- 128 (464)
T ss_pred hhccCCcccccccceEeccccc-----cccceeeEEEcCCCceeEeecccccEEEecCcee-------------------
Confidence 3445666677777777765333 3468999999999999999999999999964221
Q ss_pred CCceeeeecCCCceEEeec--cCceeeCCCCCeEEEEeCCCCcEEEEEEeccc-CcEEEEEecCCCCEEEEEeCCCcEEE
Q 014003 142 GSKRTLERTTPKNVCYHWL--SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHK-KAVSGIALPLRSDKLYSGSRDGTVQL 218 (432)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~-~~V~~l~~~~~~~~l~s~s~Dg~v~i 218 (432)
....+++.|.....+..|. +..+++|+.+|.|++|+.+-. .++.+++|. ..|++++|+|+...++|+|.||+|+|
T Consensus 129 nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn--nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~iki 206 (464)
T KOG0284|consen 129 NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN--NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKI 206 (464)
T ss_pred eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh--hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEE
Confidence 1223334444445555554 458999999999999998653 355566665 99999999999999999999999999
Q ss_pred EeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEE
Q 014003 219 WDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVW 296 (432)
Q Consensus 219 Wd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~w 296 (432)
||....+...++ .+|.-.|.+++|+|. ++++|+.|..|++|
T Consensus 207 Wdf~~~kee~vL-------------------------------------~GHgwdVksvdWHP~kgLiasgskDnlVKlW 249 (464)
T KOG0284|consen 207 WDFRMPKEERVL-------------------------------------RGHGWDVKSVDWHPTKGLIASGSKDNLVKLW 249 (464)
T ss_pred EeccCCchhhee-------------------------------------ccCCCCcceeccCCccceeEEccCCceeEee
Confidence 998776654433 678889999999998 99999999999999
Q ss_pred ECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc---CCEEEE
Q 014003 297 KGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW---DQYLLS 371 (432)
Q Consensus 297 d~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s 371 (432)
|.+++. .+.++.+|...|..+.|+ +++|+++|.|..++++|+++.+.++++++|...++++.|+ ..+|.+
T Consensus 250 DprSg~-----cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lfts 324 (464)
T KOG0284|consen 250 DPRSGS-----CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTS 324 (464)
T ss_pred cCCCcc-----hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceee
Confidence 999986 488899999999999997 9999999999999999999999999999999999999998 689999
Q ss_pred EeCCCcEEEEEcCCCCceeE-EeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 372 CSLDNTIKVWIMTEEGNLEV-AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 372 ~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
|+.||.|..|.+...+++.. -..|...+..+++ +|-|. +|++|+.|.++++|.
T Consensus 325 gg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~----hPlGh-il~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 325 GGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAY----HPLGH-ILATGSNDRTVRFWT 378 (464)
T ss_pred ccCCCceEEEeccccccccCCCcccccceeeeec----cccce-eEeecCCCcceeeec
Confidence 99999999999985554443 3456666655555 99999 999999999999995
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.2e-35 Score=279.62 Aligned_cols=266 Identities=22% Similarity=0.308 Sum_probs=223.5
Q ss_pred CCCCCCCCCCCCCceecCCCCCCCcccccccCCCCC-CCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeC
Q 014003 89 HKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDR-TVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKG 167 (432)
Q Consensus 89 h~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 167 (432)
-...+.+..|++|++.||.|-.|-.|++|.+...+. ..+.... -..+-++
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~-----------------------------l~~~d~~ 427 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASD-----------------------------LSNIDTE 427 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhh-----------------------------hcccccc
Confidence 335789999999999999999999999997664221 0000000 0011111
Q ss_pred CCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEE
Q 014003 168 DECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVF 247 (432)
Q Consensus 168 ~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (432)
+.|-.+..-|-.+. ....++.||+++|..+.|+|+.++|+++|+|++||+|.+.+..++-.+
T Consensus 428 sad~~~~~~D~~~~-~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y----------------- 489 (707)
T KOG0263|consen 428 SADVDVDMLDDDSS-GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY----------------- 489 (707)
T ss_pred ccchhhhhccccCC-ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEe-----------------
Confidence 22222444444444 345568999999999999999999999999999999999988776544
Q ss_pred EEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe
Q 014003 248 VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG 325 (432)
Q Consensus 248 ~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 325 (432)
.+|..+|+.+.|+|. ++|+++.|++-++|..... .+.+.+.+|.+.|.|++|+
T Consensus 490 --------------------~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-----~PlRifaghlsDV~cv~FH 544 (707)
T KOG0263|consen 490 --------------------KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-----KPLRIFAGHLSDVDCVSFH 544 (707)
T ss_pred --------------------cCCCcceeeEEecCCceEEEecCCCceeeeeecccC-----CchhhhcccccccceEEEC
Confidence 589999999999998 9999999999999998774 4688899999999999997
Q ss_pred --CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcce
Q 014003 326 --GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGV 401 (432)
Q Consensus 326 --~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 401 (432)
.+|+++||.|.+||+||+.+|..++.|.||.++|.+++++ |.+|++|+.||.|++||+.++..+..+.+|...+..
T Consensus 545 PNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~S 624 (707)
T KOG0263|consen 545 PNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYS 624 (707)
T ss_pred CcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeE
Confidence 8899999999999999999999999999999999999999 899999999999999999999999999999887777
Q ss_pred EEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 402 LALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 402 ~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+.| +.+|. +|++|+.|++|++||+.
T Consensus 625 lsF----S~dg~-vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 625 LSF----SRDGN-VLASGGADNSVRLWDLT 649 (707)
T ss_pred EEE----ecCCC-EEEecCCCCeEEEEEch
Confidence 777 89999 99999999999999974
No 15
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.2e-35 Score=255.60 Aligned_cols=283 Identities=21% Similarity=0.283 Sum_probs=238.9
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.+.||.+-|.++++.|...+++||+.|++|+|||+.+++.......+. . ....+.+....+.+
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi----~-------------~vr~vavS~rHpYl 208 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHI----E-------------TVRGVAVSKRHPYL 208 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchh----h-------------eeeeeeecccCceE
Confidence 569999999999999999999999999999999999887533222221 1 11345666677899
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCC
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (432)
++++.|+.|+.||++.. +.+..+.||-+.|.+++.+|.-+.|+||+.|.++++||+++...+..+
T Consensus 209 Fs~gedk~VKCwDLe~n-kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l-------------- 273 (460)
T KOG0285|consen 209 FSAGEDKQVKCWDLEYN-KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL-------------- 273 (460)
T ss_pred EEecCCCeeEEEechhh-hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe--------------
Confidence 99999999999999887 889999999999999999999999999999999999999988776654
Q ss_pred EEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEE
Q 014003 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (432)
Q Consensus 245 ~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l 322 (432)
.+|...|..+.+.+. .+++|+.|++|++||++.++. ...+..|...|.++
T Consensus 274 -----------------------~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt-----~~tlt~hkksvral 325 (460)
T KOG0285|consen 274 -----------------------SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT-----MITLTHHKKSVRAL 325 (460)
T ss_pred -----------------------cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCce-----eEeeecccceeeEE
Confidence 688999999988865 999999999999999999864 66788899999999
Q ss_pred EEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCc
Q 014003 323 AVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDH 399 (432)
Q Consensus 323 ~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 399 (432)
+.+ ...+|+++.| .|+-|++..++.++.+.+|+..+.+++.. +.++++|+..|.|.+||.+++-..+.......+.
T Consensus 326 ~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpG 404 (460)
T KOG0285|consen 326 CLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPG 404 (460)
T ss_pred ecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCC
Confidence 988 5667777766 59999999999999999999999999988 7899999999999999999987766553322221
Q ss_pred c----eEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 400 G----VLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 400 ~----~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
+ .-.++.+|+..|. .|++|..|.+|++|.
T Consensus 405 Sl~sEagI~as~fDktg~-rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 405 SLESEAGIFASCFDKTGS-RLITGEADKTIKMYK 437 (460)
T ss_pred ccccccceeEEeecccCc-eEEeccCCcceEEEe
Confidence 1 1225556677887 899999999999996
No 16
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=9.3e-34 Score=276.24 Aligned_cols=271 Identities=35% Similarity=0.568 Sum_probs=240.1
Q ss_pred cCCCceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 014003 150 TTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV 229 (432)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~ 229 (432)
+....+|..+..+.+++|+.|++|++|+..++......+.||.+.|.++++...+.+|++|+.|.++++||+.+|++..+
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~ 286 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS 286 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE
Confidence 34568899999999999999999999999999666666999999999999987889999999999999999999999999
Q ss_pred EeCCCceeeEEECCCEEEE--EcCCeEEEEEccCCceEeecC-CcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCcc
Q 014003 230 INLGAEVGSLICEGPWVFV--GMPNVVKAWHIESSAEFSLDG-PVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPF 306 (432)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~--~~~~~i~vwd~~~~~~~~~~~-~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~ 306 (432)
+..+..............+ +.|..|++|++.++..+.... |.++|.++..+.+++++|+.|++|.+||+.++
T Consensus 287 l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~----- 361 (537)
T KOG0274|consen 287 LQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTG----- 361 (537)
T ss_pred ecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhc-----
Confidence 9966665555544443333 499999999999999887665 99999999999889999999999999999965
Q ss_pred ccceeeeccccCeEEEEEeC-CEEEEEeCCCeEEEEECCCC-ceEEEecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcC
Q 014003 307 QLAALLKGHTRPVTCLAVGG-KRLYSGSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMT 384 (432)
Q Consensus 307 ~~~~~~~~h~~~v~~l~~~~-~~l~sgs~dg~I~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~ 384 (432)
+++..+.+|...|+++.+++ +.+++|+.|++|++||+++. +++.++.+|...+..+.+.+++|++++.|++|++||..
T Consensus 362 ~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 362 KCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred eeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecc
Confidence 57999999999999999998 99999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCCceeEEee-ccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 385 EEGNLEVAYT-HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 385 ~~~~~~~~~~-~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+++++..+.+ |...+..+.. ++..+++++.||.+++||+++
T Consensus 442 ~~~~~~~~~~~~~~~v~~l~~-------~~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 442 EGECLRTLEGRHVGGVSALAL-------GKEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred cCceeeeeccCCcccEEEeec-------CcceEEEEecCCeeEEEeccc
Confidence 9999999888 4454444443 234799999999999999975
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.2e-35 Score=254.69 Aligned_cols=282 Identities=24% Similarity=0.370 Sum_probs=245.8
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.+.||..+|+.+-|.|+-...|++++|++|++||..++..-....++. . ....+.++-.+..+
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt----~-------------sv~di~~~a~Gk~l 165 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHT----D-------------SVFDISFDASGKYL 165 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccc----c-------------ceeEEEEecCccEE
Confidence 668999999999999999999999999999999988876511111110 1 11355666667799
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCC
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (432)
++.+.|-.+++||.++..++++.+.+|+..|.+++|-|.|.+++|++.|.+|+.|++.++.++.++
T Consensus 166 ~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~-------------- 231 (406)
T KOG0295|consen 166 ATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTF-------------- 231 (406)
T ss_pred EecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEec--------------
Confidence 999999999999998877889999999999999999999999999999999999999999999877
Q ss_pred EEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEE
Q 014003 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (432)
Q Consensus 245 ~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l 322 (432)
.+|...|..+.++.| ++++++.|.++++|-+.++. ....+..|+.+|-|+
T Consensus 232 -----------------------~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~-----~k~~lR~hEh~vEci 283 (406)
T KOG0295|consen 232 -----------------------PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ-----CKAELREHEHPVECI 283 (406)
T ss_pred -----------------------cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch-----hhhhhhccccceEEE
Confidence 466778888888888 88999999999999988864 466788899999999
Q ss_pred EEe-----------------CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEc
Q 014003 323 AVG-----------------GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 323 ~~~-----------------~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~ 383 (432)
+|- +.++.+++.|++|++||+.++.++.++.+|...|..++++ |+||+++..|+++++||+
T Consensus 284 ~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 284 AWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDL 363 (406)
T ss_pred EecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence 881 3599999999999999999999999999999999999999 899999999999999999
Q ss_pred CCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 384 TEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
++.++...+..|..-+..+.+ +...+++++|+-|..+++|.-
T Consensus 364 ~~~~cmk~~~ah~hfvt~lDf-----h~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 364 KNLQCMKTLEAHEHFVTSLDF-----HKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ccceeeeccCCCcceeEEEec-----CCCCceEEeccccceeeeeec
Confidence 999999998888877777777 444559999999999999974
No 18
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3e-34 Score=251.60 Aligned_cols=303 Identities=16% Similarity=0.185 Sum_probs=235.1
Q ss_pred ceeeeeeecCccCCCCCccccccCCCCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCC
Q 014003 58 KVLCVYFLEGRCNRNPCRFAHTESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTG 137 (432)
Q Consensus 58 ~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~ 137 (432)
+..++.|+.+. ....-++.||+++|.++.||.||.|||||..+|.++||+..+....++-..
T Consensus 85 DD~AflW~~~~-----------ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~------- 146 (399)
T KOG0296|consen 85 DDLAFLWDIST-----------GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ------- 146 (399)
T ss_pred CceEEEEEccC-----------CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec-------
Confidence 67888998833 223347789999999999999999999999999999997665543221110
Q ss_pred CCCCCCceeeeecCCCceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEE
Q 014003 138 SDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQ 217 (432)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~ 217 (432)
....-...+.+|.+..+++|+.||.+.+|.+.++ ...+.+.||+.++++=.|.|+|++++++..||+|+
T Consensus 147 ----------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~ 215 (399)
T KOG0296|consen 147 ----------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII 215 (399)
T ss_pred ----------ccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence 0111146788888889999999999999999887 66888999999999999999999999999999999
Q ss_pred EEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEE
Q 014003 218 LWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILV 295 (432)
Q Consensus 218 iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~ 295 (432)
+||+.+++++..+.... ..+..++.++.. .++.|+.++.+++
T Consensus 216 ~Wn~ktg~p~~~~~~~e------------------------------------~~~~~~~~~~~~~~~~~~g~~e~~~~~ 259 (399)
T KOG0296|consen 216 VWNPKTGQPLHKITQAE------------------------------------GLELPCISLNLAGSTLTKGNSEGVACG 259 (399)
T ss_pred EEecCCCceeEEecccc------------------------------------cCcCCccccccccceeEeccCCccEEE
Confidence 99999999887765221 122233333333 6666777777666
Q ss_pred EECCCCCCCcc---ccceeeeccccCeEEEEE---e--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcC-
Q 014003 296 WKGIPNTQNPF---QLAALLKGHTRPVTCLAV---G--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD- 366 (432)
Q Consensus 296 wd~~~~~~~~~---~~~~~~~~h~~~v~~l~~---~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~- 366 (432)
-+..+++...- ........+...+.|+.+ + -.+.|+|+.||+|.|||+...++.+.+. |..+|+.+.|.+
T Consensus 260 ~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~t 338 (399)
T KOG0296|consen 260 VNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLNT 338 (399)
T ss_pred EccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcCc
Confidence 66555431000 001111234444444444 3 4568999999999999999888877776 888899999996
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 367 QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 367 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.+|++++.||.|+.||.++++.+..+.+|...+..+++ +|+++ +++++|.|++.+||+.+
T Consensus 339 ~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~l----s~~~~-~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFAL----SPQKR-LVVTVSDDNTALVFEVP 398 (399)
T ss_pred chheeeccCceEEeeeccccceEEEEecCchheeEEEE----cCCCc-EEEEecCCCeEEEEecC
Confidence 99999999999999999999999999999999877777 89998 99999999999999976
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.7e-33 Score=241.04 Aligned_cols=281 Identities=22% Similarity=0.291 Sum_probs=237.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeec
Q 014003 81 SQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWL 160 (432)
Q Consensus 81 ~~~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (432)
.|...+.||+++|..++|+|+|.++||||.|..|-||++-+
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g--------------------------------------- 78 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG--------------------------------------- 78 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc---------------------------------------
Confidence 46667899999999999999999999999999888884221
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI 240 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~ 240 (432)
..+-...+++|+++|..+.|.+|++.++++|.|++|+.||+++|++++.++.+.......
T Consensus 79 --------------------dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~ 138 (338)
T KOG0265|consen 79 --------------------DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSL 138 (338)
T ss_pred --------------------cccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeec
Confidence 113355677999999999999999999999999999999999999999998776655444
Q ss_pred E---CCCEEE-EE-cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeee
Q 014003 241 C---EGPWVF-VG-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLK 313 (432)
Q Consensus 241 ~---~~~~l~-~~-~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~ 313 (432)
. -+..++ ++ .|+++++||+++...+.......+++++.|... .+++|+-|+.|++||++.+. ....+.
T Consensus 139 ~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d-----~~~~ls 213 (338)
T KOG0265|consen 139 DPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND-----GLYTLS 213 (338)
T ss_pred CccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCc-----ceEEee
Confidence 2 334444 33 789999999999998888888899999999877 99999999999999998875 588899
Q ss_pred ccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCC----ceEEEecCCCCC----cEEEEEc--CCEEEEEeCCCcEEEE
Q 014003 314 GHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL----EAVMTLNGHTDA----PMSLLCW--DQYLLSCSLDNTIKVW 381 (432)
Q Consensus 314 ~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~----~~~~~~~~~~~~----v~~~~~~--~~~l~s~s~dg~i~iw 381 (432)
+|.++|+.+..+ |.++.+-+.|.++++||++.. +++..+.+|.-. ...++|+ +..+.+|+.|..+++|
T Consensus 214 Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvw 293 (338)
T KOG0265|consen 214 GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVW 293 (338)
T ss_pred cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEe
Confidence 999999999887 999999999999999999853 457777766432 3444444 6899999999999999
Q ss_pred EcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 382 IMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 382 d~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
|......+..+.+|...+..+.| +|... +|.+++.|++|.+=++
T Consensus 294 d~~~r~~lyklpGh~gsvn~~~F----hp~e~-iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 294 DTTSRRILYKLPGHYGSVNEVDF----HPTEP-IILSCSSDKTIYLGEI 337 (338)
T ss_pred ecccccEEEEcCCcceeEEEeee----cCCCc-EEEEeccCceeEeecc
Confidence 99999999999999988887777 88877 9999999999987443
No 20
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=8.2e-33 Score=289.26 Aligned_cols=292 Identities=17% Similarity=0.222 Sum_probs=223.0
Q ss_pred CCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeee-ecCCCceEEee-cc
Q 014003 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLE-RTTPKNVCYHW-LS 161 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~ 161 (432)
..+.+|.+.|.+++|+|+|.++|+|+.||+|+||+........ .........+. ......+++.+ ..
T Consensus 477 ~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~-----------~~~~~~~~~~~~~~~v~~l~~~~~~~ 545 (793)
T PLN00181 477 GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG-----------RDIHYPVVELASRSKLSGICWNSYIK 545 (793)
T ss_pred ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc-----------cccccceEEecccCceeeEEeccCCC
Confidence 3567799999999999999999999999999999865321100 00000000000 11112334433 24
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI 240 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~ 240 (432)
..+++++.|+.|++||+.++ +.+..+.+|.+.|++++|+| ++.+|+||+.||+|++||+.++..+..+.
T Consensus 546 ~~las~~~Dg~v~lWd~~~~-~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--------- 615 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARS-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK--------- 615 (793)
T ss_pred CEEEEEeCCCeEEEEECCCC-eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe---------
Confidence 58999999999999999887 77888999999999999986 78999999999999999999887665542
Q ss_pred ECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcC---CEEEEEECCCcEEEEECCCCCCCccccceeeecccc
Q 014003 241 CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN---EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 241 ~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~---~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
....+.++.+.+ ..+++|+.||.|++||++.... ....+.+|..
T Consensus 616 -----------------------------~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~----~~~~~~~h~~ 662 (793)
T PLN00181 616 -----------------------------TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL----PLCTMIGHSK 662 (793)
T ss_pred -----------------------------cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc----cceEecCCCC
Confidence 123567777743 2899999999999999987532 3566778999
Q ss_pred CeEEEEEe-CCEEEEEeCCCeEEEEECCC------CceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc
Q 014003 318 PVTCLAVG-GKRLYSGSMDNTIRVWDLDT------LEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN 388 (432)
Q Consensus 318 ~v~~l~~~-~~~l~sgs~dg~I~vwd~~~------~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~ 388 (432)
.|.++.|. +.++++++.|++|++||++. .+++.++.+|...+..+.++ +.+|++|+.|+.|++|+......
T Consensus 663 ~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~ 742 (793)
T PLN00181 663 TVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMP 742 (793)
T ss_pred CEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCc
Confidence 99999996 88999999999999999974 36788999999988888877 78999999999999999876654
Q ss_pred eeEEee-cc--------CCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 389 LEVAYT-HN--------EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 389 ~~~~~~-~~--------~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
+..... .. .........++|+|++. .|++|+.||.|+||++
T Consensus 743 ~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~-~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 743 VLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEM 792 (793)
T ss_pred eEEEecccCCcccccccCCCCcEEEEEEEcCCCC-eEEEecCCCcEEEEec
Confidence 432211 00 11122345566699998 8999999999999996
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.1e-32 Score=256.58 Aligned_cols=320 Identities=19% Similarity=0.317 Sum_probs=260.0
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCce-EEeeccC-
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNV-CYHWLSG- 162 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 162 (432)
+..||.+.|.++.|+.|.++|++||.|-++|||.++..... ....+..|....+ |++-...
T Consensus 140 ~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~-----------------~~~~l~gHkd~VvacfF~~~~~ 202 (893)
T KOG0291|consen 140 TYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL-----------------FTYALNGHKDYVVACFFGANSL 202 (893)
T ss_pred eecCCccceeEEEeccCCceEEeccccceEEEEEecccccc-----------------ceEeccCCCcceEEEEeccCcc
Confidence 67899999999999999999999999999999977665431 1122333333444 4433333
Q ss_pred ceeeCCCCCeEEEEeCCC-----------------------CcE---------E-EEEEecccCcEEEEEecCCCCEEEE
Q 014003 163 NCVKGDECRFWHSWFCGE-----------------------GFT---------M-LAKLEGHKKAVSGIALPLRSDKLYS 209 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~-----------------------~~~---------~-~~~l~~H~~~V~~l~~~~~~~~l~s 209 (432)
.+.+-+.||.+.+|.... +.+ . ..-+......|++.+|++..+.|++
T Consensus 203 ~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvv 282 (893)
T KOG0291|consen 203 DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVV 282 (893)
T ss_pred eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEE
Confidence 789999999999998861 001 0 1112233378999999999999999
Q ss_pred EeCCCcEEEEeCCCCceeEEEeCC-CceeeEEE--CCCEEEEEcC--CeEEEEEccCCc-eEeecCCcCCEEEEEEcCC-
Q 014003 210 GSRDGTVQLWDCHTGQSASVINLG-AEVGSLIC--EGPWVFVGMP--NVVKAWHIESSA-EFSLDGPVGEVYSMVVANE- 282 (432)
Q Consensus 210 ~s~Dg~v~iWd~~~~~~~~~~~~~-~~~~~~~~--~~~~l~~~~~--~~i~vwd~~~~~-~~~~~~~~~~v~~l~~~~~- 282 (432)
|=..|...++++..-.+++.+... .++..+.. .|.+++.+.. |.+.+|+.++.. .+..++|...+.+++++||
T Consensus 283 gFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg 362 (893)
T KOG0291|consen 283 GFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG 362 (893)
T ss_pred EecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCC
Confidence 999999999999999999999877 55666664 5999998755 599999998876 4578899999999999999
Q ss_pred -EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECC---------------
Q 014003 283 -MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLD--------------- 344 (432)
Q Consensus 283 -~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~--------------- 344 (432)
++++|++||+|++||...+- +..++..|+..|+.+.|. ++.++++|.||+|+.||+.
T Consensus 363 q~iaTG~eDgKVKvWn~~Sgf-----C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Q 437 (893)
T KOG0291|consen 363 QLIATGAEDGKVKVWNTQSGF-----CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQ 437 (893)
T ss_pred cEEEeccCCCcEEEEeccCce-----EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCcee
Confidence 99999999999999998874 688899999999999997 9999999999999999984
Q ss_pred -----------------------------CCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEe
Q 014003 345 -----------------------------TLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 345 -----------------------------~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (432)
+|+.+-.+.||.++|.+++++ ++.|+++|.|.+|++||+-.........
T Consensus 438 fscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl 517 (893)
T KOG0291|consen 438 FSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL 517 (893)
T ss_pred eeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE
Confidence 445566678999999998887 8999999999999999998765545555
Q ss_pred eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 394 THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 394 ~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.+...+..+++ +|+|+ -|+++..||.|.+||.+
T Consensus 518 ~i~sdvl~vsf----rPdG~-elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 518 EIRSDVLAVSF----RPDGK-ELAVATLDGQITFFDIK 550 (893)
T ss_pred eeccceeEEEE----cCCCC-eEEEEEecceEEEEEhh
Confidence 55555555555 89999 88899999999999975
No 22
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=252.40 Aligned_cols=291 Identities=21% Similarity=0.360 Sum_probs=242.8
Q ss_pred eeeeeeecCcc--CCCCCccccccCCCCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCC
Q 014003 59 VLCVYFLEGRC--NRNPCRFAHTESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCST 136 (432)
Q Consensus 59 ~~~~~~~~~~~--~~~p~~~l~~~~~~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~ 136 (432)
.....|+.||- +|+-|+.. ..++|.+++. |...++||..|.||+|||.++-.
T Consensus 175 ~idsNWr~Gr~~~~rinc~Se-----------~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~------------- 228 (499)
T KOG0281|consen 175 TIESNWRCGRHLLQRINCRSE-----------NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLE------------- 228 (499)
T ss_pred hhhcchhccceeeeeecCCcc-----------cCCceEEEEe--cchhhhcccccCceEEeccccHH-------------
Confidence 45667888874 23555532 3455677765 56679999999999999765433
Q ss_pred CCCCCCCceeeeecCCCceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcE
Q 014003 137 GSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTV 216 (432)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v 216 (432)
..+++.+|.+...|+.+....+++|+.|.+|+|||++++ +++.++-+|.+.|..+.|+ +.+++|+|.|.++
T Consensus 229 ------c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tg-e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsi 299 (499)
T KOG0281|consen 229 ------CLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTG-EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSI 299 (499)
T ss_pred ------HHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCC-chhhHHhhhcceeEEEEEe--CCEEEEecCCcee
Confidence 234556677789999999999999999999999999999 8899999999999999996 5699999999999
Q ss_pred EEEeCCCCcee---EEEe-CCCceeeEEECCCEEE-EEcCCeEEEEEccCCceE-eecCCcCCEEEEEEcCCEEEEEECC
Q 014003 217 QLWDCHTGQSA---SVIN-LGAEVGSLICEGPWVF-VGMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQD 290 (432)
Q Consensus 217 ~iWd~~~~~~~---~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~g~~d 290 (432)
.+||+.+...+ +++. +-+.+..+..+.++++ +++|.+|++|++.+.+.+ .+.+|...|.|+.+...++++|+.|
T Consensus 300 aVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSD 379 (499)
T KOG0281|consen 300 AVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSD 379 (499)
T ss_pred EEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCC
Confidence 99999865422 2222 3355666667777666 568999999999999866 6789999999999999999999999
Q ss_pred CcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCc---------eEEEecCCCCCcEE
Q 014003 291 GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLE---------AVMTLNGHTDAPMS 361 (432)
Q Consensus 291 g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~---------~~~~~~~~~~~v~~ 361 (432)
.+|++||+..+. +++.+++|+.-|.|+.|+.+.+++|..||+|+|||+.++. ++.++..|++.|..
T Consensus 380 ntIRlwdi~~G~-----cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFr 454 (499)
T KOG0281|consen 380 NTIRLWDIECGA-----CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFR 454 (499)
T ss_pred ceEEEEeccccH-----HHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEE
Confidence 999999999985 5888999999999999999999999999999999998754 45667789999999
Q ss_pred EEEcCCEEEEEeCCCcEEEEEcCCCCce
Q 014003 362 LLCWDQYLLSCSLDNTIKVWIMTEEGNL 389 (432)
Q Consensus 362 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 389 (432)
+.|+...+++++.|.+|.|||+.++...
T Consensus 455 LQFD~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 455 LQFDEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred EeecceEEEeccCCCeEEEEEcCCCCcc
Confidence 9999999999999999999999876543
No 23
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-32 Score=249.69 Aligned_cols=317 Identities=17% Similarity=0.250 Sum_probs=251.6
Q ss_pred CCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCC--CCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRT--VPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.+|+++|.+++|+||++.++|.|.|.++||||+...+.. ++... ......+-..|..+.+
T Consensus 232 ~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~------------------~v~dqqvG~lWqkd~l 293 (603)
T KOG0318|consen 232 DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGS------------------TVEDQQVGCLWQKDHL 293 (603)
T ss_pred CCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCC------------------chhceEEEEEEeCCeE
Confidence 489999999999999999999999999999998876431 11100 0112355566778999
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEE--eCCCceeeEEE-
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI--NLGAEVGSLIC- 241 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~--~~~~~~~~~~~- 241 (432)
++-+.+|+|..++.+.. .+...+.||...|++++.++++++|+||+.||.|.-||..++..-+.. .+...+..+..
T Consensus 294 ItVSl~G~in~ln~~d~-~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~ 372 (603)
T KOG0318|consen 294 ITVSLSGTINYLNPSDP-SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS 372 (603)
T ss_pred EEEEcCcEEEEecccCC-ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeec
Confidence 99999999999999888 488999999999999999999999999999999999999988776653 24555666664
Q ss_pred -CCCEEEEEcCCeEEEEEccCCceE--------------------------------eec--------CCcCCEEEEEEc
Q 014003 242 -EGPWVFVGMPNVVKAWHIESSAEF--------------------------------SLD--------GPVGEVYSMVVA 280 (432)
Q Consensus 242 -~~~~l~~~~~~~i~vwd~~~~~~~--------------------------------~~~--------~~~~~v~~l~~~ 280 (432)
.+.++.++.|..+++.++..+... .+. ...-...+++++
T Consensus 373 ~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~ 452 (603)
T KOG0318|consen 373 ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS 452 (603)
T ss_pred CCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEc
Confidence 367888889999999876432100 011 112234567777
Q ss_pred CC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEE-EecCC
Q 014003 281 NE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVM-TLNGH 355 (432)
Q Consensus 281 ~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~-~~~~~ 355 (432)
|+ .+++|++||.|++|.+..... ........|..+|++++++ +.+||+|...+.+.+||+.+.+... .+.-|
T Consensus 453 ~~~~~vaVGG~Dgkvhvysl~g~~l---~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FH 529 (603)
T KOG0318|consen 453 PDGSEVAVGGQDGKVHVYSLSGDEL---KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFH 529 (603)
T ss_pred CCCCEEEEecccceEEEEEecCCcc---cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeee
Confidence 77 999999999999999988653 2334566799999999997 9999999999999999999988743 33459
Q ss_pred CCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeE-EeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 356 TDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEV-AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 356 ~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+..|.+++|+ +.++|+||.|..|.||+++.+..... ...|...+..+.|. +.. .+++.+.|-.|++|+++
T Consensus 530 takI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-----de~-tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 530 TAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-----DES-TVVSSGQDANIKVWNVT 602 (603)
T ss_pred eeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-----cCc-eEEeccCcceeEEeccc
Confidence 9999999999 57999999999999999998765433 33577777777773 444 68889999999999875
No 24
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-31 Score=243.11 Aligned_cols=322 Identities=18% Similarity=0.295 Sum_probs=254.7
Q ss_pred CCCCCCCCCCCCCCC-CCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecC--CCceEEeecc
Q 014003 85 PVSNHKKSPPSYNCP-KNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTT--PKNVCYHWLS 161 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s-~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 161 (432)
++.||+..|++++|- ..-.+++|||+|+++-++. +|.+ . -+.....|. ...+-+.|.+
T Consensus 142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe--GPPF--------K---------Fk~s~r~HskFV~~VRysPDG 202 (603)
T KOG0318|consen 142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFE--GPPF--------K---------FKSSFREHSKFVNCVRYSPDG 202 (603)
T ss_pred eeeccceeEeeeeccCCCceEEEeccCCCeEEEee--CCCe--------e---------eeecccccccceeeEEECCCC
Confidence 789999999999995 4455699999999999983 2221 1 111112222 2456678888
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEe---cccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCc---
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLE---GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE--- 235 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~---~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~--- 235 (432)
..+++.+.||.+.+||-.++ +.+..|. +|++.|.+|+|+||++.++|+|.|.+++|||+.+.++++++.....
T Consensus 203 ~~Fat~gsDgki~iyDGktg-e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~d 281 (603)
T KOG0318|consen 203 SRFATAGSDGKIYIYDGKTG-EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVED 281 (603)
T ss_pred CeEEEecCCccEEEEcCCCc-cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhc
Confidence 89999999999999999988 7788887 8999999999999999999999999999999999999999987655
Q ss_pred --eeeEEECCCEEEEEcCCeEEEEEccCCceE-eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccc---
Q 014003 236 --VGSLICEGPWVFVGMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQ--- 307 (432)
Q Consensus 236 --~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~--- 307 (432)
+.++-....++.++.+|.|..++....... ...+|...|+++..+++ +|++|+.||.|.-||...+......
T Consensus 282 qqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~ 361 (603)
T KOG0318|consen 282 QQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKG 361 (603)
T ss_pred eEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccccc
Confidence 334445777888999999999999888743 67899999999999998 9999999999999998765432110
Q ss_pred ---cc--------------------------------------------------------------eeeeccc------
Q 014003 308 ---LA--------------------------------------------------------------ALLKGHT------ 316 (432)
Q Consensus 308 ---~~--------------------------------------------------------------~~~~~h~------ 316 (432)
.+ ..++.+.
T Consensus 362 h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~ 441 (603)
T KOG0318|consen 362 HTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIP 441 (603)
T ss_pred ccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeec
Confidence 00 0000000
Q ss_pred --cCeEEEEEe--CCEEEEEeCCCeEEEEECCCCce--EEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc
Q 014003 317 --RPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA--VMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN 388 (432)
Q Consensus 317 --~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~ 388 (432)
-...+++++ ++.++.|+.||.|+||.+..... ...+..|.+++++++++ +.||+++...+.+.+||+.+.+.
T Consensus 442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce
Confidence 011234443 78899999999999999987553 44567899999999999 68999999999999999998876
Q ss_pred eeEEee-ccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 389 LEVAYT-HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 389 ~~~~~~-~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
...... |...+.+++| +|+.+ ++|+|+.|-.|.||+++
T Consensus 522 ~~~~w~FHtakI~~~aW----sP~n~-~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 522 KTNRWAFHTAKINCVAW----SPNNK-LVATGSLDTNVIIYSVK 560 (603)
T ss_pred ecceeeeeeeeEEEEEe----CCCce-EEEeccccceEEEEEcc
Confidence 444443 7777777776 89999 99999999999999975
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.2e-32 Score=225.02 Aligned_cols=260 Identities=22% Similarity=0.327 Sum_probs=217.7
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCce--eEEEeCC-Cceee
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS--ASVINLG-AEVGS 238 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~--~~~~~~~-~~~~~ 238 (432)
-.+++++.|.+||+|+..++ .+..+++...+.|..+.+.|++++||+++. ..||+||++++.. +.++... ..+..
T Consensus 11 viLvsA~YDhTIRfWqa~tG-~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTG-ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred eEEEeccCcceeeeeehhcC-eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEE
Confidence 36899999999999999999 889999988899999999999999999886 5799999998764 6666654 45554
Q ss_pred EE--ECCCEEEEE-cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeee
Q 014003 239 LI--CEGPWVFVG-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLK 313 (432)
Q Consensus 239 ~~--~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~ 313 (432)
+. .+++++++| .||.++|||++.........+..+|+++..+|+ .|++|..+|.|++||+...... ...+.
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~----~~liP 164 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT----HELIP 164 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc----cccCC
Confidence 44 699998876 799999999999888888888999999999999 9999999999999999887431 12233
Q ss_pred ccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCC------ceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEc
Q 014003 314 GHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL------EAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 314 ~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~------~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~ 383 (432)
....+|.+++.. |.+++.+...|..++|++-+. +++.+++.|++.+..+.++ +++|+++|.|.+++||+.
T Consensus 165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 345678887774 999999999999999998653 5677889999999999888 699999999999999999
Q ss_pred CCC-CceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 384 TEE-GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 384 ~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
++. +.-..+.+| ....|.+.||.||+ +|++|+.|+.+++|+++.
T Consensus 245 ~~~~kle~~l~gh----~rWvWdc~FS~dg~-YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 245 DDFFKLELVLTGH----QRWVWDCAFSADGE-YLVTASSDHTARLWDLSA 289 (311)
T ss_pred CCceeeEEEeecC----CceEEeeeeccCcc-EEEecCCCCceeeccccc
Confidence 887 222233334 35678888899999 999999999999999863
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.7e-32 Score=266.49 Aligned_cols=287 Identities=23% Similarity=0.374 Sum_probs=234.7
Q ss_pred CCCCC-CCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCc
Q 014003 85 PVSNH-KKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (432)
Q Consensus 85 ~~~gh-~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (432)
.+.+| ...|.+++|+++|+++++++.|+++++|+...... . . .... .-+......+++.+.+..
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---~--~-----~~~l-----~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---N--L-----LREL-----SGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---h--h-----hccc-----cccccceeeeEECCCCcE
Confidence 34455 78899999999999999999999999998633321 0 0 0000 001112247788888889
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECC
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~ 243 (432)
+++++.|++|+|||+......++++.+|...|++++|+|+++++++|+.|++|+|||++++++...+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l------------- 284 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL------------- 284 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee-------------
Confidence 9999999999999996655889999999999999999999999999999999999999999888766
Q ss_pred CEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccC--e
Q 014003 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP--V 319 (432)
Q Consensus 244 ~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~--v 319 (432)
.+|...|.+++++++ .+++++.|+.|++||+.++... +...+..+..+ +
T Consensus 285 ------------------------~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~ 337 (456)
T KOG0266|consen 285 ------------------------KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSAPV 337 (456)
T ss_pred ------------------------eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCCce
Confidence 578889999999998 8999999999999999998521 24455555554 8
Q ss_pred EEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEE---c--CCEEEEEeCCCcEEEEEcCCCCceeEE
Q 014003 320 TCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLC---W--DQYLLSCSLDNTIKVWIMTEEGNLEVA 392 (432)
Q Consensus 320 ~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~---~--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 392 (432)
+++.|+ +.++++++.|+.+++||++.++++..+.+|...+.++.. . +.++++++.|+.|++||+.+...+..+
T Consensus 338 ~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 338 TSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL 417 (456)
T ss_pred eEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh
Confidence 999997 999999999999999999999999999999887533321 1 789999999999999999998888888
Q ss_pred eec-cCCcceEEEeeeeCCCCCcEEEEEe--CCCeEEEeeCC
Q 014003 393 YTH-NEDHGVLALGGLNDPDGNPVLICSC--NDDSVHLYELP 431 (432)
Q Consensus 393 ~~~-~~~~~~~~~~~~~sp~g~~~l~sg~--~Dg~I~iwdl~ 431 (432)
.+| ...+..+.+ +|... ++++++ .|+.|++|..+
T Consensus 418 ~~h~~~~~~~~~~----~~~~~-~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 418 EGHSKAAVSDLSS----HPTEN-LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCCCCCceecccc----CCCcC-eeeecCcCCCceEEEecCC
Confidence 888 554444444 78777 888887 79999999764
No 27
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-33 Score=269.70 Aligned_cols=294 Identities=15% Similarity=0.182 Sum_probs=213.5
Q ss_pred CCccccccCCCCCCC-CCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCccc-----ccCCCC------C-
Q 014003 73 PCRFAHTESQTLPVS-NHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSL-----DCSTGS------D- 139 (432)
Q Consensus 73 p~~~l~~~~~~~~~~-gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~-----~~~~~~------~- 139 (432)
.++.|......+.+. +|++.||+++||+||+||||||+||.||||.+........+.... .+.... .
T Consensus 249 ~~kelsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~ 328 (712)
T KOG0283|consen 249 SPKELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSS 328 (712)
T ss_pred CcccceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccc
Confidence 344445555566776 999999999999999999999999999999987722110000000 000000 0
Q ss_pred --CCCCceeeeecCCCceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEE
Q 014003 140 --DSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQ 217 (432)
Q Consensus 140 --~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~ 217 (432)
................|...... +.- -..+++..|.||.+.|.+|+|+. .++|+|+|.|+|||
T Consensus 329 ~~~~~~~~s~~~~~~~s~~~~~p~~------------~f~--f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVR 393 (712)
T KOG0283|consen 329 EEKISSRTSSSRKGSQSPCVLLPLK------------AFV--FSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVR 393 (712)
T ss_pred cccccccccccccccCCccccCCCc------------ccc--ccccchhhhhccchhheeccccc-CCeeEeccccccEE
Confidence 00000011111111111000000 000 11277899999999999999985 46899999999999
Q ss_pred EEeCCCCceeEEEeCCCceeeEEE----CCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCC
Q 014003 218 LWDCHTGQSASVINLGAEVGSLIC----EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDG 291 (432)
Q Consensus 218 iWd~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg 291 (432)
+|++...+|++.|.+...++|+++ +..+|.++.|+.+++|++...++.........|+++++.|+ ..++|+.+|
T Consensus 394 LWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G 473 (712)
T KOG0283|consen 394 LWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNG 473 (712)
T ss_pred eecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEecc
Confidence 999999999999999999999995 44566667999999999999999999999999999999999 999999999
Q ss_pred cEEEEECCCCCCCccccceeeecc------ccCeEEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCc--E
Q 014003 292 NILVWKGIPNTQNPFQLAALLKGH------TRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAP--M 360 (432)
Q Consensus 292 ~i~~wd~~~~~~~~~~~~~~~~~h------~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v--~ 360 (432)
.+++|++...+.. ....+..| ...|+.+.|. ...+++.+.|..|||+|.++..++..|+|+...- .
T Consensus 474 ~C~fY~t~~lk~~---~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~ 550 (712)
T KOG0283|consen 474 YCRFYDTEGLKLV---SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQI 550 (712)
T ss_pred EEEEEEccCCeEE---EeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcce
Confidence 9999998876531 11111111 2279999986 4468888999999999999999999999776543 2
Q ss_pred EEEE--cCCEEEEEeCCCcEEEEEcC
Q 014003 361 SLLC--WDQYLLSCSLDNTIKVWIMT 384 (432)
Q Consensus 361 ~~~~--~~~~l~s~s~dg~i~iwd~~ 384 (432)
...+ +|++|++++.|..|++|+..
T Consensus 551 ~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 551 SASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred eeeEccCCCEEEEeecCceEEEEeCC
Confidence 2333 38999999999999999974
No 28
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.5e-32 Score=256.55 Aligned_cols=348 Identities=18% Similarity=0.254 Sum_probs=258.9
Q ss_pred ceeeeeeecCccCCCCCccccccCCCCCCCCCCCCCCCCCCCCC-----ceecCCCCCCCcccccccCCCCCCCCCCc--
Q 014003 58 KVLCVYFLEGRCNRNPCRFAHTESQTLPVSNHKKSPPSYNCPKN-----NVRVSSGSEEGTTHVQNRENPDRTVPNKS-- 130 (432)
Q Consensus 58 ~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~gh~~~v~~~~~s~~-----g~~las~~~Dg~i~iW~~~~~~~~~~~~~-- 130 (432)
+++|+.|+--. |+-+...+--. .+-++.+-++ |.++.+.|.+|++++|+.++.........
T Consensus 213 Dkvi~vwd~~~-----~~~l~~lp~ye-------~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~ 280 (775)
T KOG0319|consen 213 DKVIIVWDLVQ-----YKKLKTLPLYE-------SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD 280 (775)
T ss_pred CcEEEEeehhh-----hhhhheechhh-------heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC
Confidence 48999999843 33333222111 2334444333 77999999999999999887653211100
Q ss_pred -----ccccCCCCC-----CCCCceeee------------ecCCCceEEe---eccCceeeCCCCCeEEEEeCCCCcEEE
Q 014003 131 -----SLDCSTGSD-----DSGSKRTLE------------RTTPKNVCYH---WLSGNCVKGDECRFWHSWFCGEGFTML 185 (432)
Q Consensus 131 -----~~~~~~~~~-----~~~~~~~~~------------~~~~~~~~~~---~~~~~~~~g~~d~~i~vw~~~~~~~~~ 185 (432)
+.....+.. .....-.+. +...+..-.- +..+.++.+...+.+++|+..+....
T Consensus 281 ~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~- 359 (775)
T KOG0319|consen 281 SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ- 359 (775)
T ss_pred chhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-
Confidence 000000000 000000110 1111111112 22358889999999999998776433
Q ss_pred EEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCce----eEEEe-CCCceeeEEE----CCCEEEEEcCCeEEE
Q 014003 186 AKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS----ASVIN-LGAEVGSLIC----EGPWVFVGMPNVVKA 256 (432)
Q Consensus 186 ~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~----~~~~~-~~~~~~~~~~----~~~~l~~~~~~~i~v 256 (432)
.+.||++.|.++....+|.+|+|||.|+++++|.++.+.. +.... +...+.++.. ..-++.++.|.++++
T Consensus 360 -ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 360 -IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred -EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 7899999999999666789999999999999998854432 22222 3445555553 223455679999999
Q ss_pred EEccCCce----E------eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEE
Q 014003 257 WHIESSAE----F------SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV 324 (432)
Q Consensus 257 wd~~~~~~----~------~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~ 324 (432)
|++...+. . ....|...|++++++|+ ++++|++|.+.++|++.. ..+...+.+|...|.|+.|
T Consensus 439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-----~~l~~vLsGH~RGvw~V~F 513 (775)
T KOG0319|consen 439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-----LRLLGVLSGHTRGVWCVSF 513 (775)
T ss_pred ecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC-----ceEEEEeeCCccceEEEEe
Confidence 99977321 1 34578899999999998 999999999999999994 3578899999999999999
Q ss_pred e--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcc
Q 014003 325 G--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHG 400 (432)
Q Consensus 325 ~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 400 (432)
+ .+.++++|.|++|+||.+.++.|+++|.||...|..+.|- +..|++++.||.|++|++++.++...+..|...+.
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvW 593 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVW 593 (775)
T ss_pred ccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeE
Confidence 8 6799999999999999999999999999999999999987 89999999999999999999999999999999987
Q ss_pred eEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 401 VLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 401 ~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
+++. +|.+. ++++|+.||.|.+|.
T Consensus 594 aL~~----~~~~~-~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 594 ALSV----SPLLD-MFVTGGGDGRIIFWK 617 (775)
T ss_pred EEee----cCccc-eeEecCCCeEEEEee
Confidence 7777 78888 999999999999996
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.9e-31 Score=244.61 Aligned_cols=279 Identities=28% Similarity=0.416 Sum_probs=228.4
Q ss_pred CCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCC--CceEEeecc
Q 014003 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLS 161 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 161 (432)
..+.+|+++|.+++|+|++.++++++.||.+++|+..+.... .....+.. ..+.+.+..
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-------------------~~~~~~~~~i~~~~~~~~~ 63 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-------------------RTLKGHTGPVRDVAASADG 63 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-------------------EEEecCCcceeEEEECCCC
Confidence 356789999999999999999999999999999987654310 01111111 133444445
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~ 241 (432)
..+++++.++.|++|++.++ +.+..+..|...|.+++|+++++++++++.|+.|.+||+.+++....+
T Consensus 64 ~~l~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----------- 131 (289)
T cd00200 64 TYLASGSSDKTIRLWDLETG-ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL----------- 131 (289)
T ss_pred CEEEEEcCCCeEEEEEcCcc-cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe-----------
Confidence 58999999999999999876 567788899999999999999999999988999999999876655433
Q ss_pred CCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCe
Q 014003 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (432)
Q Consensus 242 ~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v 319 (432)
..+...+.++.++++ ++++++.++.|++||++.++ ....+..|...+
T Consensus 132 --------------------------~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-----~~~~~~~~~~~i 180 (289)
T cd00200 132 --------------------------RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-----CVATLTGHTGEV 180 (289)
T ss_pred --------------------------ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-----cceeEecCcccc
Confidence 346678899999985 66667779999999998654 456677888899
Q ss_pred EEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeec
Q 014003 320 TCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTH 395 (432)
Q Consensus 320 ~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 395 (432)
.++.++ ++.+++++.|+.|++||+++++.+..+..|...+.++.+. +.++++++.|+.|++||+.+.+....+..|
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 260 (289)
T cd00200 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH 260 (289)
T ss_pred ceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc
Confidence 999997 5589999999999999999999999998899999999988 467777777999999999988887777777
Q ss_pred cCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 396 NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 396 ~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
...+..+.+ +|+++ +|++++.||.|++|+
T Consensus 261 ~~~i~~~~~----~~~~~-~l~~~~~d~~i~iw~ 289 (289)
T cd00200 261 TNSVTSLAW----SPDGK-RLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEE----CCCCC-EEEEecCCCeEEecC
Confidence 766666666 88888 899999999999996
No 30
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.5e-33 Score=251.36 Aligned_cols=280 Identities=19% Similarity=0.273 Sum_probs=234.2
Q ss_pred CCCCCCCCCCCCCCCC-CceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCc
Q 014003 85 PVSNHKKSPPSYNCPK-NNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~-~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (432)
.+.||+..|.++.|.| .+.+|+|+|.|+.|+||+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~--------------------------------------------- 243 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWN--------------------------------------------- 243 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEE---------------------------------------------
Confidence 7799999999999977 999999999999888884
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE--
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC-- 241 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~-- 241 (432)
+|+ ...++.++.+|..+|.+++|+++|..++|+|.|+.|++||+++|+++..+.......++.+
T Consensus 244 -----------vy~---~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~p 309 (503)
T KOG0282|consen 244 -----------VYD---DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHP 309 (503)
T ss_pred -----------Eec---CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCC
Confidence 222 2267899999999999999999999999999999999999999999999999988888874
Q ss_pred CC--CEEEEEcCCeEEEEEccCCceE-eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccc
Q 014003 242 EG--PWVFVGMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT 316 (432)
Q Consensus 242 ~~--~~l~~~~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~ 316 (432)
++ .+++++.|+.|+.||+++++.+ ....|.+.|..+.|-++ .+++.++|+++++|+.+.+-. .+.+.....|+
T Consensus 310 d~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~--ik~i~~~~~hs 387 (503)
T KOG0282|consen 310 DNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP--IKNIADPEMHT 387 (503)
T ss_pred CCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc--chhhcchhhcc
Confidence 33 3566669999999999999966 45678889999999887 999999999999999988754 33444445566
Q ss_pred cCeEEEEEeCCEEEEEeCCCeEEEEECCCC---ceEEEecCCCCC--cEEEEEc--CCEEEEEeCCCcEEEEEcCCCCce
Q 014003 317 RPVTCLAVGGKRLYSGSMDNTIRVWDLDTL---EAVMTLNGHTDA--PMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNL 389 (432)
Q Consensus 317 ~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~---~~~~~~~~~~~~--v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~ 389 (432)
.+...+..++++++.-+.|+.|.++.+... .....+++|..+ ...+.|+ |.+|++|+.||.+.+||.++-+.+
T Consensus 388 mP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~ 467 (503)
T KOG0282|consen 388 MPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLV 467 (503)
T ss_pred CcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhh
Confidence 665555566999999999999999997643 234567888765 4445555 799999999999999999999999
Q ss_pred eEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 390 EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
..+..|...+..+.| +|.....+|+++.||.|++||
T Consensus 468 ~~lkah~~~ci~v~w----HP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 468 SKLKAHDQPCIGVDW----HPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hccccCCcceEEEEe----cCCCcceeEecccCceeEecC
Confidence 999999776655555 888777899999999999997
No 31
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-32 Score=224.73 Aligned_cols=280 Identities=18% Similarity=0.230 Sum_probs=218.2
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.+..|++.|..+.|+-||.|..+.+.|.++|+||...+........+ ...+ -........+.+
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh-----------G~EV------lD~~~s~Dnskf 74 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH-----------GHEV------LDAALSSDNSKF 74 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCC-----------Ccee------eecccccccccc
Confidence 56899999999999999999988888999999975544332111111 0011 123344567789
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCC
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (432)
++++.|+.+.+||++++ +.+..+.+|.+.|+.++|+.+...+++|+.|.++++||.++......
T Consensus 75 ~s~GgDk~v~vwDV~TG-kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePi--------------- 138 (307)
T KOG0316|consen 75 ASCGGDKAVQVWDVNTG-KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPI--------------- 138 (307)
T ss_pred ccCCCCceEEEEEcccC-eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCcc---------------
Confidence 99999999999999999 88999999999999999999999999999999999999986542211
Q ss_pred EEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEE
Q 014003 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV 324 (432)
Q Consensus 245 ~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~ 324 (432)
..+......|.++.+....|++|+.||+++.||++.++. ... .-..+|+|++|
T Consensus 139 --------------------Qildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l-----~sD--y~g~pit~vs~ 191 (307)
T KOG0316|consen 139 --------------------QILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTL-----SSD--YFGHPITSVSF 191 (307)
T ss_pred --------------------chhhhhcCceeEEEecccEEEeeccCCcEEEEEeeccee-----ehh--hcCCcceeEEe
Confidence 122455677899999999999999999999999999853 222 23568999999
Q ss_pred e--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc----CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCC
Q 014003 325 G--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW----DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNED 398 (432)
Q Consensus 325 ~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 398 (432)
+ ++..++++.|+++++.|-++|+.+..+++|...-..+.+. ...+++||+||.|++||+.+...+..+..+...
T Consensus 192 s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v 271 (307)
T KOG0316|consen 192 SKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV 271 (307)
T ss_pred cCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce
Confidence 7 9999999999999999999999999999999876665554 679999999999999999998877766655543
Q ss_pred cceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 399 HGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 399 ~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
+.....++|.-. -++++. ++.+..|.
T Consensus 272 ---~v~dl~~hp~~~-~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 272 ---IVTDLSCHPTMD-DFITAT-GHGDLFWY 297 (307)
T ss_pred ---eEEeeecccCcc-ceeEec-CCceecee
Confidence 122333478766 344443 34455553
No 32
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.6e-31 Score=223.42 Aligned_cols=238 Identities=20% Similarity=0.353 Sum_probs=208.8
Q ss_pred EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCcee---eEEECCCEEEEE-cCCeEEEEE
Q 014003 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG---SLICEGPWVFVG-MPNVVKAWH 258 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~-~~~~i~vwd 258 (432)
+...+|+||...|.++.|++|.++++++|.||.+.|||.-+......++...... ++.+.++++++| .|+...||+
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 5568899999999999999999999999999999999999998888888776532 234788888876 799999999
Q ss_pred ccCC--c-----eEeecCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe---CC
Q 014003 259 IESS--A-----EFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GK 327 (432)
Q Consensus 259 ~~~~--~-----~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~ 327 (432)
+.+. + ...+.+|.+-+.++.|.++ .|++++.|.++.+||+++++ .+..+.+|...|.++++. ++
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~-----~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ-----QTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce-----EEEEecCCcccEEEEecCCCCCC
Confidence 9855 2 2357899999999999988 99999999999999999986 478899999999999885 79
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeec--cCCcceEE
Q 014003 328 RLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTH--NEDHGVLA 403 (432)
Q Consensus 328 ~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~ 403 (432)
.+++|+.|+..++||++.+.++++|.+|...|.++.|. |.-+++|+.|++.++||++..+.+..+... ..+++.++
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~ 280 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVA 280 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEE
Confidence 99999999999999999999999999999999999998 789999999999999999999888776532 23344445
Q ss_pred EeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 404 LGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 404 ~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
| |..|+ +|++|..|.++.+||.
T Consensus 281 F----S~SGR-lLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 281 F----SKSGR-LLFAGYDDFTCNVWDT 302 (343)
T ss_pred E----ccccc-EEEeeecCCceeEeec
Confidence 4 88999 9999999999999995
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-30 Score=247.34 Aligned_cols=318 Identities=19% Similarity=0.297 Sum_probs=248.8
Q ss_pred CCCCCCCCCCCCCceecCCCCCCCcccccccCCCCC--CCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccC--ce
Q 014003 89 HKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDR--TVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG--NC 164 (432)
Q Consensus 89 h~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 164 (432)
-+.+|.++.|||||+++|.|. ...+.||...+... ..|. ...+....+..+.++..|..+ .+
T Consensus 95 fk~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pF-------------vl~r~~~g~fddi~si~Ws~DSr~l 160 (893)
T KOG0291|consen 95 FKRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPF-------------VLHRTYLGHFDDITSIDWSDDSRLL 160 (893)
T ss_pred ecCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcc-------------eEeeeecCCccceeEEEeccCCceE
Confidence 456899999999999999998 77889996544322 1111 223445556678889999766 78
Q ss_pred eeCCCCCeEEEEeCCCCc-EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC-------------------
Q 014003 165 VKGDECRFWHSWFCGEGF-TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG------------------- 224 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~-~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~------------------- 224 (432)
++|+.|-.+++|.++... -....+.+|++.|-+.-|..+...++|.+.||.+.+|.....
T Consensus 161 ~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~ 240 (893)
T KOG0291|consen 161 VTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEM 240 (893)
T ss_pred EeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccc
Confidence 999999999999996542 235668899999999999999999999999999999987611
Q ss_pred ----ce---------eEEEeCC---CceeeEEE--CCCEEEEE-cCCeEEEEEccCCceEe-ecCCcCCEEEEEEc--CC
Q 014003 225 ----QS---------ASVINLG---AEVGSLIC--EGPWVFVG-MPNVVKAWHIESSAEFS-LDGPVGEVYSMVVA--NE 282 (432)
Q Consensus 225 ----~~---------~~~~~~~---~~~~~~~~--~~~~l~~~-~~~~i~vwd~~~~~~~~-~~~~~~~v~~l~~~--~~ 282 (432)
+. .+..-.. ..+.+..+ ...+++++ ..|...++.+.....+. +.-....|..+.++ ++
T Consensus 241 ~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGD 320 (893)
T KOG0291|consen 241 DEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGD 320 (893)
T ss_pred cccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCC
Confidence 00 0000001 22222222 34566666 67788899998887664 34445788899998 66
Q ss_pred EEEEEECC-CcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCc
Q 014003 283 MLFAGAQD-GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAP 359 (432)
Q Consensus 283 ~l~~g~~d-g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v 359 (432)
.++.|+.. |.+.+|+..... .+...++|...+++++++ |+++++|++||.|+|||.+++-|..+|..|+..|
T Consensus 321 WiA~g~~klgQLlVweWqsEs-----YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~V 395 (893)
T KOG0291|consen 321 WIAFGCSKLGQLLVWEWQSES-----YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGV 395 (893)
T ss_pred EEEEcCCccceEEEEEeeccc-----eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCce
Confidence 88777655 899999998875 366678999999999997 8899999999999999999999999999999999
Q ss_pred EEEEEc--CCEEEEEeCCCcEEEEEcC--------------------------------------------CCCceeEEe
Q 014003 360 MSLLCW--DQYLLSCSLDNTIKVWIMT--------------------------------------------EEGNLEVAY 393 (432)
Q Consensus 360 ~~~~~~--~~~l~s~s~dg~i~iwd~~--------------------------------------------~~~~~~~~~ 393 (432)
+.+.|. ++.++++|.||+|+.||+. +++.+..+.
T Consensus 396 t~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs 475 (893)
T KOG0291|consen 396 TAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS 475 (893)
T ss_pred EEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc
Confidence 999998 8999999999999999986 334444556
Q ss_pred eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 394 THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 394 ~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
+|.+++..+++ +|+|. .|++|+.|.+||+||+
T Consensus 476 GHEgPVs~l~f----~~~~~-~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 476 GHEGPVSGLSF----SPDGS-LLASGSWDKTVRIWDI 507 (893)
T ss_pred CCCCcceeeEE----ccccC-eEEeccccceEEEEEe
Confidence 67777777666 89999 9999999999999996
No 34
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-32 Score=262.32 Aligned_cols=201 Identities=24% Similarity=0.381 Sum_probs=184.4
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.+.||+++|.+..|+|+.++|.|+|+|+++|||.+.+-
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~------------------------------------------ 483 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW------------------------------------------ 483 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccc------------------------------------------
Confidence 47899999999999999999999999999999942211
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCC
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (432)
..+..++||..+|..+.|+|.|-|+||+|.|++.++|.....+..+.+
T Consensus 484 ------------------s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif-------------- 531 (707)
T KOG0263|consen 484 ------------------SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF-------------- 531 (707)
T ss_pred ------------------eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh--------------
Confidence 446678899999999999999999999999999999999887777655
Q ss_pred EEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEE
Q 014003 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (432)
Q Consensus 245 ~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l 322 (432)
.+|...|.|+.|+|+ ++++|+.|.+|++||+.++.. ++.+.||..+|+++
T Consensus 532 -----------------------aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-----VRiF~GH~~~V~al 583 (707)
T KOG0263|consen 532 -----------------------AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-----VRIFTGHKGPVTAL 583 (707)
T ss_pred -----------------------cccccccceEEECCcccccccCCCCceEEEEEcCCCcE-----EEEecCCCCceEEE
Confidence 588999999999999 999999999999999999864 88899999999999
Q ss_pred EEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCC
Q 014003 323 AVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEG 387 (432)
Q Consensus 323 ~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~ 387 (432)
+|+ |.+|++|+.||.|.+||+.+++++..+.+|.+.|.++.|+ |..|++|+.|.+|++||+....
T Consensus 584 ~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 584 AFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 998 9999999999999999999999999999999999999999 8999999999999999987543
No 35
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.98 E-value=2.5e-30 Score=233.79 Aligned_cols=277 Identities=20% Similarity=0.281 Sum_probs=230.2
Q ss_pred eeeeecCCCceEEeeccC---ceeeCCCCCeEEEEeCCCC-c--EEEEEEe------c----ccCcEEEEEecCCCCEEE
Q 014003 145 RTLERTTPKNVCYHWLSG---NCVKGDECRFWHSWFCGEG-F--TMLAKLE------G----HKKAVSGIALPLRSDKLY 208 (432)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~---~~~~g~~d~~i~vw~~~~~-~--~~~~~l~------~----H~~~V~~l~~~~~~~~l~ 208 (432)
+++. |.....|..|.+. .+++|+.|-..++|++... . .....|+ + -+..|++++|+.+|.+||
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 3434 6666777777654 7899999999999999641 0 1111111 1 236899999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE--CCCE-EEEEcCCeEEEEEccCCceEe-ecCCcCCEEEEEEcCC-E
Q 014003 209 SGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC--EGPW-VFVGMPNVVKAWHIESSAEFS-LDGPVGEVYSMVVANE-M 283 (432)
Q Consensus 209 s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~--~~~~-l~~~~~~~i~vwd~~~~~~~~-~~~~~~~v~~l~~~~~-~ 283 (432)
+|+.||.+++|+...+.....-.+..++.++.. .+.+ ++++.|+++.+||..++.... +.-|..+-..+.|..+ .
T Consensus 252 tG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~ 331 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE 331 (524)
T ss_pred EeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce
Confidence 999999999999875554444457788888885 3444 456699999999999888664 4445555577888877 9
Q ss_pred EEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEE
Q 014003 284 LFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMS 361 (432)
Q Consensus 284 l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~ 361 (432)
+++.+.||.|+++.+.... ++.++.+|.++|.+|.|+ +.+|+++|.|++++||+.....+...+.+|+..|..
T Consensus 332 F~ts~td~~i~V~kv~~~~-----P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t 406 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDR-----PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYT 406 (524)
T ss_pred EeecCCCceEEEEEecCCC-----cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceee
Confidence 9999999999999988754 688899999999999999 999999999999999999999999999999999999
Q ss_pred EEEc-----------CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 362 LLCW-----------DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 362 ~~~~-----------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
+.|+ +..+++++.|++|++||+..+.++..+..|..++..+++ +|+|+ ++++|+.||.|.+|++
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvaf----S~~g~-ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAF----SPNGR-YLASGSLDGCVHIWST 481 (524)
T ss_pred EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEe----cCCCc-EEEecCCCCeeEeccc
Confidence 9887 257999999999999999999999999999999988887 89999 9999999999999998
Q ss_pred CC
Q 014003 431 PS 432 (432)
Q Consensus 431 ~s 432 (432)
++
T Consensus 482 ~~ 483 (524)
T KOG0273|consen 482 KT 483 (524)
T ss_pred cc
Confidence 74
No 36
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=1.3e-30 Score=228.22 Aligned_cols=242 Identities=26% Similarity=0.406 Sum_probs=212.9
Q ss_pred CCCceeeeecCCC--ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEE
Q 014003 141 SGSKRTLERTTPK--NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQL 218 (432)
Q Consensus 141 ~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~i 218 (432)
+...+++..|..- ++.+.|....+++|+.|++++|||+.++ ++..++.||...|..+++++...||++++.|+.|+.
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg-~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG-QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC-eEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 3444666666654 4455666679999999999999999999 889999999999999999999999999999999999
Q ss_pred EeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEE
Q 014003 219 WDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVW 296 (432)
Q Consensus 219 Wd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~w 296 (432)
||++..+.++.+ .+|-..|++++.+|. .|++|+.|.++++|
T Consensus 220 wDLe~nkvIR~Y-------------------------------------hGHlS~V~~L~lhPTldvl~t~grDst~RvW 262 (460)
T KOG0285|consen 220 WDLEYNKVIRHY-------------------------------------HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVW 262 (460)
T ss_pred EechhhhhHHHh-------------------------------------ccccceeEEEeccccceeEEecCCcceEEEe
Confidence 999988877655 588999999999987 99999999999999
Q ss_pred ECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcC--CEEEEE
Q 014003 297 KGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD--QYLLSC 372 (432)
Q Consensus 297 d~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~ 372 (432)
|+++.. .+..+.+|..+|..+.+. ...+++||.|++|++||++.|+.+.++..|...+.+++.++ ..++++
T Consensus 263 DiRtr~-----~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASa 337 (460)
T KOG0285|consen 263 DIRTRA-----SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASA 337 (460)
T ss_pred eecccc-----eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhcc
Confidence 999975 488899999999999997 88899999999999999999999999999999999999883 556666
Q ss_pred eCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 373 SLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 373 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+.| .|+-|++..+..+..+.+|+..+..++. ..|| ++++|++.|.+.+||.++
T Consensus 338 s~d-nik~w~~p~g~f~~nlsgh~~iintl~~----nsD~--v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 338 SPD-NIKQWKLPEGEFLQNLSGHNAIINTLSV----NSDG--VLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred CCc-cceeccCCccchhhccccccceeeeeee----ccCc--eEEEcCCceEEEEEecCc
Confidence 665 5999999999998888889888888777 4444 799999999999999875
No 37
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.5e-30 Score=213.59 Aligned_cols=241 Identities=19% Similarity=0.275 Sum_probs=208.2
Q ss_pred EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC-CceeeEE--E-CCCEEEEEcCCeEEEEE
Q 014003 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG-AEVGSLI--C-EGPWVFVGMPNVVKAWH 258 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~-~~~~~~~--~-~~~~l~~~~~~~i~vwd 258 (432)
+....+..|+++|.++.|+-+|+|.++++.|.+|++|+...+.+++++..+ .++.... . +.++.++|.|..+.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 346678899999999999999999999999999999999999999999854 4454443 3 45566677999999999
Q ss_pred ccCCceE-eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCC
Q 014003 259 IESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD 335 (432)
Q Consensus 259 ~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~d 335 (432)
+.+++.. .+.+|.++|+.+.|+.+ .+++|+.|.++++||.+... .++++.+....+.|.++...+..+++|+.|
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s---~ePiQildea~D~V~Si~v~~heIvaGS~D 164 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS---FEPIQILDEAKDGVSSIDVAEHEIVAGSVD 164 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCC---CCccchhhhhcCceeEEEecccEEEeeccC
Confidence 9999976 67899999999999988 99999999999999999887 467888888889999999999999999999
Q ss_pred CeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCC
Q 014003 336 NTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGN 413 (432)
Q Consensus 336 g~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~ 413 (432)
|++|.||++.|+....+-+| +|++++++ ++..++++.|+++++.|-.+++.+..+.+|......+..+ ++....
T Consensus 165 GtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~--l~qsdt 240 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC--LNQSDT 240 (307)
T ss_pred CcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee--ecccce
Confidence 99999999999988777665 46666666 8999999999999999999999999999998765554443 333344
Q ss_pred cEEEEEeCCCeEEEeeCC
Q 014003 414 PVLICSCNDDSVHLYELP 431 (432)
Q Consensus 414 ~~l~sg~~Dg~I~iwdl~ 431 (432)
.+++|++||.|.+||+.
T Consensus 241 -hV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 241 -HVFSGSEDGKVYFWDLV 257 (307)
T ss_pred -eEEeccCCceEEEEEec
Confidence 89999999999999985
No 38
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=4.9e-30 Score=215.85 Aligned_cols=280 Identities=19% Similarity=0.246 Sum_probs=233.2
Q ss_pred CCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCc
Q 014003 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (432)
..+.+|.+.|.+++|+.+|.+||+|+.|+++++|+++....
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~--------------------------------------- 54 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF--------------------------------------- 54 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh---------------------------------------
Confidence 46789999999999999999999999999999997554322
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI-- 240 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~-- 240 (432)
..-..+.+|.+.|-.++|+| +..+|++++.|.+|++||.+++++........+...+.
T Consensus 55 -------------------~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~ws 115 (313)
T KOG1407|consen 55 -------------------RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWS 115 (313)
T ss_pred -------------------hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEc
Confidence 11223578999999999966 67899999999999999999999999888766554444
Q ss_pred ECCCEEEEE-cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeecccc
Q 014003 241 CEGPWVFVG-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 241 ~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
+++.+++++ .|..|...|.++.+..........+..+.|+.+ +++.....|.|.|..... .+++..+++|..
T Consensus 116 p~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps-----Lkpv~si~AH~s 190 (313)
T KOG1407|consen 116 PDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS-----LKPVQSIKAHPS 190 (313)
T ss_pred CCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccc-----cccccccccCCc
Confidence 566666655 889999999999998877777778888888744 777777779999998775 567999999999
Q ss_pred CeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEe
Q 014003 318 PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 318 ~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (432)
...|+.|+ |++||+|+.|-.+.+||++..-|++.+..+.-+|..++|+ |++||++|+|..|-|=+++++..+..+.
T Consensus 191 nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 191 NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee
Confidence 99999998 9999999999999999999999999999999999999998 8999999999999999999998887765
Q ss_pred eccCCcceEEEeeeeCCCCCcEEEEEeCC---------CeEEEeeCCC
Q 014003 394 THNEDHGVLALGGLNDPDGNPVLICSCND---------DSVHLYELPS 432 (432)
Q Consensus 394 ~~~~~~~~~~~~~~~sp~g~~~l~sg~~D---------g~I~iwdl~s 432 (432)
.. .+. +.++|+|... +||-+++| |.|++|-+++
T Consensus 271 ~~-~~t----~tVAWHPk~~-LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 271 CE-GPT----FTVAWHPKRP-LLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred cc-CCc----eeEEecCCCc-eeeEEecCCCCccccccceeEEecCCC
Confidence 43 333 4445589877 77766544 6788887653
No 39
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=9.7e-30 Score=216.02 Aligned_cols=222 Identities=24% Similarity=0.380 Sum_probs=189.1
Q ss_pred cCceeeCCCCCeEEEEeCCCC----cEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCce
Q 014003 161 SGNCVKGDECRFWHSWFCGEG----FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV 236 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~----~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~ 236 (432)
...+++++.|..+.+|++... ..+++.|.||+..|..++.+++|++.++++.|+++++||+.+++..+.+
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f------ 101 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF------ 101 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE------
Confidence 458899999999999998432 2568899999999999999999999999999999999999999777655
Q ss_pred eeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeee-
Q 014003 237 GSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLK- 313 (432)
Q Consensus 237 ~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~- 313 (432)
.+|...|.+++++++ .+++|+.|.+|.+|++.... ..++.
T Consensus 102 -------------------------------~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c------k~t~~~ 144 (315)
T KOG0279|consen 102 -------------------------------VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC------KYTIHE 144 (315)
T ss_pred -------------------------------EecCCceEEEEecCCCceeecCCCcceeeeeeecccE------EEEEec
Confidence 689999999999998 99999999999999988763 23333
Q ss_pred -ccccCeEEEEEe----CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCC
Q 014003 314 -GHTRPVTCLAVG----GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEE 386 (432)
Q Consensus 314 -~h~~~v~~l~~~----~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~ 386 (432)
.+.+.|.|+.|+ ..++++++.|++|++||+++.+....+.+|++.++.+.++ |...++|+.||.+.+||++.+
T Consensus 145 ~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 145 DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC
Confidence 237899999997 4589999999999999999999999999999999999888 789999999999999999999
Q ss_pred CceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 387 GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+.++.+ .+...+.+++| +|+.- .| +...+-.|+|||+++
T Consensus 225 k~lysl-~a~~~v~sl~f----spnry-wL-~~at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 225 KNLYSL-EAFDIVNSLCF----SPNRY-WL-CAATATSIKIWDLES 263 (315)
T ss_pred ceeEec-cCCCeEeeEEe----cCCce-eE-eeccCCceEEEeccc
Confidence 885544 45555666665 78754 44 444566799999875
No 40
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.8e-30 Score=244.34 Aligned_cols=291 Identities=19% Similarity=0.300 Sum_probs=240.6
Q ss_pred CCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCc
Q 014003 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (432)
.++.||+..|.++.+|.+...++||+ .+.++||++.+.+....-. ..-.-..||-|-...
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~-------------------~~y~l~~~Fvpgd~~ 426 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTIT-------------------CGYILASKFVPGDRY 426 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEec-------------------cccEEEEEecCCCce
Confidence 37799999999999999999999998 8899999877655421110 000014456666669
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECC
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~ 243 (432)
++.|...|.+.+||+.+. ..+.+.++|++.|.+++.+||+..++|||.|.+|++||..--.. .+ +
T Consensus 427 Iv~G~k~Gel~vfdlaS~-~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~---~~--g--------- 491 (888)
T KOG0306|consen 427 IVLGTKNGELQVFDLASA-SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS---VP--G--------- 491 (888)
T ss_pred EEEeccCCceEEEEeehh-hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec---cC--c---------
Confidence 999999999999999887 66778889999999999999999999999999999999741110 00 0
Q ss_pred CEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEE
Q 014003 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (432)
Q Consensus 244 ~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 321 (432)
.. -++..+... ........|.|+.++|| +++++--|.++++|-+.+- +..-.+-||.-||.|
T Consensus 492 ------t~--~k~lsl~~~---rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-----KFflsLYGHkLPV~s 555 (888)
T KOG0306|consen 492 ------TQ--KKVLSLKHT---RTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-----KFFLSLYGHKLPVLS 555 (888)
T ss_pred ------cc--ceeeeeccc---eEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-----eeeeeecccccceeE
Confidence 00 001111111 12344678999999999 9999999999999998874 456778899999999
Q ss_pred EEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccC
Q 014003 322 LAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE 397 (432)
Q Consensus 322 l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 397 (432)
|.++ ++.++|||.|.+|++|-++=|.|-+.+-+|...|+++.|. ...+.+++.|+.|+-||-..-+.++.+.+|..
T Consensus 556 mDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ 635 (888)
T KOG0306|consen 556 MDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS 635 (888)
T ss_pred EeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchh
Confidence 9886 9999999999999999999999999999999999999998 57899999999999999999999999999999
Q ss_pred CcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 398 DHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 398 ~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
.+.+++. +|+|. ++++++.|.+||+|.-
T Consensus 636 ev~cLav----~~~G~-~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 636 EVWCLAV----SPNGS-FVVSSSHDKSIRLWER 663 (888)
T ss_pred eeeeeEE----cCCCC-eEEeccCCceeEeeec
Confidence 9988888 89999 9999999999999974
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.9e-30 Score=239.70 Aligned_cols=278 Identities=19% Similarity=0.249 Sum_probs=224.2
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
++..|++.|.++.|.|.--.+..+=..|.+.|||.++-.. -....+ .+.+.....|-.-...+
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm----VksfeV-------------~~~PvRa~kfiaRknWi 70 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM----VKSFEV-------------SEVPVRAAKFIARKNWI 70 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEeccccee----eeeeee-------------cccchhhheeeeccceE
Confidence 4455889999999999999999999999999997654321 000000 01111222233345589
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC-ceeEEEeCCCceeeEEECC
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-QSASVINLGAEVGSLICEG 243 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~-~~~~~~~~~~~~~~~~~~~ 243 (432)
++|+.|..|+||+.++. +.+..+.+|.+-|.+|+.+|...+++|+|.|-+|++||.+.+ .+.+
T Consensus 71 v~GsDD~~IrVfnynt~-ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q--------------- 134 (794)
T KOG0276|consen 71 VTGSDDMQIRVFNYNTG-EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ--------------- 134 (794)
T ss_pred EEecCCceEEEEecccc-eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee---------------
Confidence 99999999999999998 789999999999999999999999999999999999998754 2333
Q ss_pred CEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeE
Q 014003 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (432)
Q Consensus 244 ~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 320 (432)
.+++|..-|.+++++|. .+++++-|++|++|.+.+.. +..++++|...|.
T Consensus 135 ----------------------tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-----~nfTl~gHekGVN 187 (794)
T KOG0276|consen 135 ----------------------TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-----PNFTLEGHEKGVN 187 (794)
T ss_pred ----------------------EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-----CceeeeccccCcc
Confidence 45789999999999987 99999999999999998864 5788999999999
Q ss_pred EEEEe----CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcC--CEEEEEeCCCcEEEEEcCCCCceeEEee
Q 014003 321 CLAVG----GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD--QYLLSCSLDNTIKVWIMTEEGNLEVAYT 394 (432)
Q Consensus 321 ~l~~~----~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 394 (432)
|+.+- ..+|++|+.|.+|+|||.++..|++++.||...|..+.+++ ..+++||+||+++||+..+-+....+.-
T Consensus 188 ~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~ 267 (794)
T KOG0276|consen 188 CVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY 267 (794)
T ss_pred eEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc
Confidence 99995 34999999999999999999999999999999999999995 6899999999999999888766555544
Q ss_pred ccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEE
Q 014003 395 HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHL 427 (432)
Q Consensus 395 ~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~i 427 (432)
..+.+.+++. .+.+. .++.|.+.|.|.+
T Consensus 268 gleRvW~I~~----~k~~~-~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 268 GLERVWCIAA----HKGDG-KIAVGFDEGSVTV 295 (794)
T ss_pred CCceEEEEee----cCCCC-eEEEeccCCcEEE
Confidence 4444443333 45444 5777877777653
No 42
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.9e-29 Score=222.57 Aligned_cols=273 Identities=21% Similarity=0.312 Sum_probs=214.0
Q ss_pred CCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEee-----ccC
Q 014003 88 NHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHW-----LSG 162 (432)
Q Consensus 88 gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 162 (432)
-|-+-|-+++-. ++++.||++||++|||+..+... ..+.++........| ...
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~--------------------~~~~Ght~~ik~v~~v~~n~~~~ 160 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSI--------------------KTIVGHTGPIKSVAWVIKNSSSC 160 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCceE--------------------EEEecCCcceeeeEEEecCCccc
Confidence 366777788777 88999999999999998665432 111111111111111 122
Q ss_pred ceeeCCCCCeEEEEeCCCCc---EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC---------------
Q 014003 163 NCVKGDECRFWHSWFCGEGF---TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG--------------- 224 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~---~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~--------------- 224 (432)
.+++++.|.++++|..+.+. +.+...+||+..|.+++..++|..+++||.|.+|+||+.++.
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~ 240 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKK 240 (423)
T ss_pred eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhh
Confidence 58999999999999987652 223334599999999999999999999999999999993221
Q ss_pred ----------ceeEEEe-CCCceeeEEE-C-CCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEEC
Q 014003 225 ----------QSASVIN-LGAEVGSLIC-E-GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQ 289 (432)
Q Consensus 225 ----------~~~~~~~-~~~~~~~~~~-~-~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~ 289 (432)
.++-.+. +.+++..+.. + +..+.++.|.+|+.||++++...........+.++...+. +|++|+.
T Consensus 241 ~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gss 320 (423)
T KOG0313|consen 241 QKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSS 320 (423)
T ss_pred hhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCC
Confidence 1111222 2344555553 3 3345567999999999999998887777888999999988 9999999
Q ss_pred CCcEEEEECCCCCCCccccceeeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCCc-eEEEecCCCCCcEEEEEc
Q 014003 290 DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLE-AVMTLNGHTDAPMSLLCW 365 (432)
Q Consensus 290 dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~-~~~~~~~~~~~v~~~~~~ 365 (432)
|..|++||.+++.. .-+.+++.+|.+.|.++.++ ...|++|+.|+++++||+|+-+ ++..+.+|...|.++.|+
T Consensus 321 dr~irl~DPR~~~g--s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 321 DRHIRLWDPRTGDG--SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN 398 (423)
T ss_pred CCceeecCCCCCCC--ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc
Confidence 99999999998854 34567789999999999997 6789999999999999999988 999999999999999999
Q ss_pred -CCEEEEEeCCCcEEEEEcC
Q 014003 366 -DQYLLSCSLDNTIKVWIMT 384 (432)
Q Consensus 366 -~~~l~s~s~dg~i~iwd~~ 384 (432)
+.+|++|+.|.+|+|+.-.
T Consensus 399 ~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 399 EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCceEEeccCcceEEEeccc
Confidence 6799999999999998643
No 43
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=8.5e-30 Score=215.04 Aligned_cols=278 Identities=19% Similarity=0.267 Sum_probs=229.8
Q ss_pred CCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCc
Q 014003 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (432)
..+.||+.+++.++++.+|..|.|.+.|.++.||-
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~--------------------------------------------- 38 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWY--------------------------------------------- 38 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEE---------------------------------------------
Confidence 35789999999999999999999999999988881
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--E
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--C 241 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~ 241 (432)
..++ +.+.++.||++.|+++..+.+.++|+||+.|.++++||+++|+++..++.+.++..+. .
T Consensus 39 --------------s~nG-erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~ 103 (327)
T KOG0643|consen 39 --------------SLNG-ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSF 103 (327)
T ss_pred --------------ecCC-ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeecc
Confidence 1112 5588899999999999999999999999999999999999999999999998887665 4
Q ss_pred CCCEEEEEc------CCeEEEEEccCCc--------eEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCc
Q 014003 242 EGPWVFVGM------PNVVKAWHIESSA--------EFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNP 305 (432)
Q Consensus 242 ~~~~l~~~~------~~~i~vwd~~~~~--------~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~ 305 (432)
++++++++. .+.|.++|++... ......+...++.+.|.+- .|++|.+||.|..||.+++.
T Consensus 104 ~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~--- 180 (327)
T KOG0643|consen 104 GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK--- 180 (327)
T ss_pred CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc---
Confidence 777776654 4589999988432 3456677788999999876 99999999999999999984
Q ss_pred cccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcC--CEEEEEeCCCc----
Q 014003 306 FQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD--QYLLSCSLDNT---- 377 (432)
Q Consensus 306 ~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~dg~---- 377 (432)
+.+...+.|...|+.|.++ ..+++++|.|.+-++||.++.++++++. -..++.+.++++ ++++.|+....
T Consensus 181 -~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVT 258 (327)
T KOG0643|consen 181 -ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVT 258 (327)
T ss_pred -eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeee
Confidence 4677778899999999997 8899999999999999999999999997 456777777773 44444433221
Q ss_pred ----------EEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 378 ----------IKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 378 ----------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.++|++-..+.+..+.+|-++++.+++ +|+|+ ..++|++||.||+..+.
T Consensus 259 TT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAf----hPdGk-sYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 259 TTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAF----HPDGK-SYSSGGEDGYVRLHHFD 317 (327)
T ss_pred eecccccchhhhHHHHHHHHHhccccccccCcceeEE----CCCCc-ccccCCCCceEEEEEec
Confidence 233444444567788899999999999 89999 89999999999997654
No 44
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=3e-29 Score=244.69 Aligned_cols=280 Identities=26% Similarity=0.398 Sum_probs=238.8
Q ss_pred CCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeec--cCceee
Q 014003 89 HKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWL--SGNCVK 166 (432)
Q Consensus 89 h~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 166 (432)
|...+.+..|. +.++.+++.|.+|++|+......... .+.+|....-++... ...+++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lvs 266 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLVS 266 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEEE
Confidence 44566666666 66788899999999998665543211 022233344444444 779999
Q ss_pred CCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEe-CCCceeeEEECCCE
Q 014003 167 GDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN-LGAEVGSLICEGPW 245 (432)
Q Consensus 167 g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~ 245 (432)
|+.|+++++||..++ ++...+.+|.+.|.++.. ...++++|+.|.+|++|++++++++..+. +...+.++..++.+
T Consensus 267 gS~D~t~rvWd~~sg-~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~ 343 (537)
T KOG0274|consen 267 GSTDKTERVWDCSTG-ECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPL 343 (537)
T ss_pred EecCCcEEeEecCCC-cEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCE
Confidence 999999999999888 889999999999999985 46689999999999999999999999999 88899999988777
Q ss_pred EEEE-cCCeEEEEEccCCceE-eecCCcCCEEEEEEcC-CEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEE
Q 014003 246 VFVG-MPNVVKAWHIESSAEF-SLDGPVGEVYSMVVAN-EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (432)
Q Consensus 246 l~~~-~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~-~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l 322 (432)
++++ .|+.|++||+.+++.+ .+.+|...|+++.+.+ +.+++|+.|++|++||+++.. +++..+.+|..-+..+
T Consensus 344 lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~----~c~~tl~~h~~~v~~l 419 (537)
T KOG0274|consen 344 LVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR----KCIHTLQGHTSLVSSL 419 (537)
T ss_pred EEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchh----hhhhhhcCCccccccc
Confidence 7655 8999999999988865 6789999999999999 799999999999999999873 4688999999999999
Q ss_pred EEeCCEEEEEeCCCeEEEEECCCCceEEEecC-CCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeec
Q 014003 323 AVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNG-HTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTH 395 (432)
Q Consensus 323 ~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 395 (432)
.+.+++|++++.|++|++||..++++++++.+ |...+..+......+++++.|+++++||++++.....+..+
T Consensus 420 ~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 420 LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred ccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhhhhhhc
Confidence 99999999999999999999999999999998 67888888877789999999999999999999887766443
No 45
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.6e-30 Score=225.96 Aligned_cols=232 Identities=24% Similarity=0.301 Sum_probs=207.4
Q ss_pred CceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC-ceeEEEe
Q 014003 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-QSASVIN 231 (432)
Q Consensus 153 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~-~~~~~~~ 231 (432)
..+-++|....++++++|.+|++||..++ +....|+||++.|.+|+|+..|++|++++.|-.+++||.++- ++++.
T Consensus 112 t~v~~hp~~~~v~~as~d~tikv~D~~tg-~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks-- 188 (406)
T KOG0295|consen 112 TRVIFHPSEALVVSASEDATIKVFDTETG-ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKS-- 188 (406)
T ss_pred eeeeeccCceEEEEecCCceEEEEEccch-hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHH--
Confidence 45667888889999999999999999998 779999999999999999999999999999999999998752 33332
Q ss_pred CCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccc
Q 014003 232 LGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLA 309 (432)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~ 309 (432)
+.+|...|.++.+-|. ++++++.|.+|+.||+.++- .+
T Consensus 189 -----------------------------------~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~-----cv 228 (406)
T KOG0295|consen 189 -----------------------------------LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY-----CV 228 (406)
T ss_pred -----------------------------------hcCcccceeeEEEEecCCeeeecccccceeEEecccce-----eE
Confidence 3567777778777665 99999999999999999974 58
Q ss_pred eeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc------------C-----CEEE
Q 014003 310 ALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW------------D-----QYLL 370 (432)
Q Consensus 310 ~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~------------~-----~~l~ 370 (432)
.++.+|...|..+..+ |..+++++.|.+|++|-+.++++...+..|.-+|-+++|- + +++.
T Consensus 229 ~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~ 308 (406)
T KOG0295|consen 229 KTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLG 308 (406)
T ss_pred EeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEE
Confidence 8999999999999886 8899999999999999999999999999999999888874 2 5999
Q ss_pred EEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 371 SCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 371 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+++.|++|++||+.++.++..+.+|..-+..+++ +|.|+ +|++..+|+++++||+++
T Consensus 309 s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af----~p~Gk-yi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 309 SGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAF----SPGGK-YILSCADDKTLRVWDLKN 365 (406)
T ss_pred eecccceEEEEeccCCeEEEEEecccceeeeeEE----cCCCe-EEEEEecCCcEEEEEecc
Confidence 9999999999999999999999999999988888 89999 899999999999999864
No 46
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-29 Score=236.53 Aligned_cols=233 Identities=21% Similarity=0.333 Sum_probs=216.2
Q ss_pred CceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC
Q 014003 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (432)
Q Consensus 153 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 232 (432)
+.+-++|..+.++++-..|.|+|||.++. .+++.++-.+-+|.+..|-+..+.+++|+.|..|+|++.++++.+..+
T Consensus 17 KsVd~HPtePw~la~LynG~V~IWnyetq-tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F-- 93 (794)
T KOG0276|consen 17 KSVDFHPTEPWILAALYNGDVQIWNYETQ-TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF-- 93 (794)
T ss_pred eeeecCCCCceEEEeeecCeeEEEecccc-eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe--
Confidence 56778888999999999999999999998 889999999999999999999999999999999999999999888766
Q ss_pred CCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccce
Q 014003 233 GAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAA 310 (432)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~ 310 (432)
..|..-|.+++.+|. ++++++.|-.|++||...+ +.+.+
T Consensus 94 -----------------------------------eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~----wa~~q 134 (794)
T KOG0276|consen 94 -----------------------------------EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE----WACEQ 134 (794)
T ss_pred -----------------------------------eccccceeeeeecCCCCeEEecCCccEEEEeeccCc----eeeee
Confidence 578899999999999 9999999999999999887 67889
Q ss_pred eeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc-C---CEEEEEeCCCcEEEEEc
Q 014003 311 LLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-D---QYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 311 ~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~-~---~~l~s~s~dg~i~iwd~ 383 (432)
++++|..-|.+++|+ .+.++++|-|++|+||.+.+..+..++++|...|.++.+- + .+|++|+.|.+|+|||.
T Consensus 135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDy 214 (794)
T KOG0276|consen 135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDY 214 (794)
T ss_pred EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeec
Confidence 999999999999997 7899999999999999999999999999999999999988 3 59999999999999999
Q ss_pred CCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 384 TEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.+..+++.+.+|...++.+.+ +|.=. ++++|++||+||||+-.|
T Consensus 215 Qtk~CV~TLeGHt~Nvs~v~f----hp~lp-iiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 215 QTKSCVQTLEGHTNNVSFVFF----HPELP-IIISGSEDGTVRIWNSKT 258 (794)
T ss_pred chHHHHHHhhcccccceEEEe----cCCCc-EEEEecCCccEEEecCcc
Confidence 999999999999999888777 77765 999999999999998654
No 47
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=8.3e-30 Score=226.97 Aligned_cols=276 Identities=18% Similarity=0.267 Sum_probs=228.0
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.+..|.+++..+.|-++...||+|+.|..|++|++.+.+.. ....+.-+.+.. ..+-+......+
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~--~~~tLaGs~g~i-------------t~~d~d~~~~~~ 234 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE--LISTLAGSLGNI-------------TSIDFDSDNKHV 234 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh--hhhhhhccCCCc-------------ceeeecCCCceE
Confidence 66889999999999999999999999999999998876621 111221111111 244555566789
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCC
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (432)
++++.|+.+++|+++.. +...+|.||++.|+++.|......+++|+.|.+|++||+....|.+++-.......+.+...
T Consensus 235 iAas~d~~~r~Wnvd~~-r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~ 313 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSL-RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSIS 313 (459)
T ss_pred EeecCCCceeeeeccch-hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecce
Confidence 99999999999999887 78899999999999999987777799999999999999999999999988888888888655
Q ss_pred EEEEE-cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeecc----cc
Q 014003 245 WVFVG-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH----TR 317 (432)
Q Consensus 245 ~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h----~~ 317 (432)
.++.+ .|+.|++||++...........+.|+++..+.+ .+++.+.|.++.+.|+++... ...+.+. ..
T Consensus 314 ~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI-----~~~~sA~g~k~as 388 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI-----RQTFSAEGFKCAS 388 (459)
T ss_pred eeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccE-----EEEeecccccccc
Confidence 55555 899999999999988877777779999999888 888889999999999998652 3333221 12
Q ss_pred CeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCC--cEEEEEc--CCEEEEEeCCCcEEEE
Q 014003 318 PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA--PMSLLCW--DQYLLSCSLDNTIKVW 381 (432)
Q Consensus 318 ~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~--v~~~~~~--~~~l~s~s~dg~i~iw 381 (432)
..+.+.|+ +.|+++||.||.|+||++.++++...+...... |++++|+ |..|++++.++.+.+|
T Consensus 389 DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 25666676 899999999999999999999999988765554 9999998 8999999999999999
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3.1e-28 Score=237.91 Aligned_cols=233 Identities=27% Similarity=0.424 Sum_probs=202.9
Q ss_pred EEeeccCceeeCCCCCeEEEEeCCCCc-EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeC-CCCceeEEEeCC
Q 014003 156 CYHWLSGNCVKGDECRFWHSWFCGEGF-TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDC-HTGQSASVINLG 233 (432)
Q Consensus 156 ~~~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~-~~~~~~~~~~~~ 233 (432)
-+++.+..+++++.++.+++|+..... .....+.+|...|.+++|+|+++++++++.|++|+|||+ ..+.+++++
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l--- 242 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL--- 242 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe---
Confidence 356777799999999999999996552 267777899999999999999999999999999999999 444666554
Q ss_pred CceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCcccccee
Q 014003 234 AEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAAL 311 (432)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~ 311 (432)
.+|...|++++|++. ++++|+.|++|++||+++++ +...
T Consensus 243 ----------------------------------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-----~~~~ 283 (456)
T KOG0266|consen 243 ----------------------------------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-----CVRK 283 (456)
T ss_pred ----------------------------------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-----EEEe
Confidence 689999999999998 99999999999999999964 6888
Q ss_pred eeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCc--eEEEecCCCCC--cEEEEEc--CCEEEEEeCCCcEEEEEc
Q 014003 312 LKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLE--AVMTLNGHTDA--PMSLLCW--DQYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 312 ~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~--~~~~~~~~~~~--v~~~~~~--~~~l~s~s~dg~i~iwd~ 383 (432)
+.+|.+.|++++|+ +++|++++.|+.|++||+.++. ++..+.++... +.++.++ +.++++++.|+.+++||+
T Consensus 284 l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l 363 (456)
T KOG0266|consen 284 LKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDL 363 (456)
T ss_pred eeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEc
Confidence 99999999999997 9999999999999999999999 67888777766 7888887 799999999999999999
Q ss_pred CCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 384 TEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.....+.....|.... .-.+....++.++ ++++|+.|+.|++||+.+
T Consensus 364 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 364 RSGKSVGTYTGHSNLV-RCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred cCCcceeeecccCCcc-eeEecccccCCCC-eEEEEeCCceEEEEeCCc
Confidence 9999999998888763 2223334467888 999999999999999874
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.8e-28 Score=236.51 Aligned_cols=283 Identities=20% Similarity=0.289 Sum_probs=232.1
Q ss_pred CCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeC
Q 014003 88 NHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKG 167 (432)
Q Consensus 88 gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 167 (432)
--+..|.+++|.|.--.+.++--.|.|++||-.-+...... +.+.+.. ..++|++..+.+++|
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF----deHdGpV-------------Rgv~FH~~qplFVSG 69 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF----DEHDGPV-------------RGVDFHPTQPLFVSG 69 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh----hccCCcc-------------ceeeecCCCCeEEec
Confidence 34566889999999999999999999999986654321111 1112222 678999999999999
Q ss_pred CCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEE
Q 014003 168 DECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVF 247 (432)
Q Consensus 168 ~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (432)
+.|..|+||+..+. +++.+|.||-+.|..+.|++.-..++|+|.|.||+||+..+++++..+
T Consensus 70 GDDykIkVWnYk~r-rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl----------------- 131 (1202)
T KOG0292|consen 70 GDDYKIKVWNYKTR-RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL----------------- 131 (1202)
T ss_pred CCccEEEEEecccc-eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE-----------------
Confidence 99999999999887 889999999999999999999999999999999999999999998876
Q ss_pred EEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCC---------------------
Q 014003 248 VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQN--------------------- 304 (432)
Q Consensus 248 ~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~--------------------- 304 (432)
.+|..-|.|..|+|. .+++++-|.+|++||+..-...
T Consensus 132 --------------------tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLf 191 (1202)
T KOG0292|consen 132 --------------------TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLF 191 (1202)
T ss_pred --------------------ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhc
Confidence 578888889889885 8899999999999997532110
Q ss_pred ---ccccceeeeccccCeEEEEEeC--CEEEEEeCCCeEEEEECCCCce--EEEecCCCCCcEEEEEcC--CEEEEEeCC
Q 014003 305 ---PFQLAALLKGHTRPVTCLAVGG--KRLYSGSMDNTIRVWDLDTLEA--VMTLNGHTDAPMSLLCWD--QYLLSCSLD 375 (432)
Q Consensus 305 ---~~~~~~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~vwd~~~~~~--~~~~~~~~~~v~~~~~~~--~~l~s~s~d 375 (432)
..-....+++|...|..++|++ ..+++|+.|..|++|.+..-+. +-+..+|.+.|.++.|++ +++++.|+|
T Consensus 192 g~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsED 271 (1202)
T KOG0292|consen 192 GQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSED 271 (1202)
T ss_pred CCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCC
Confidence 0112356789999999999995 7899999999999999876543 667889999999999995 899999999
Q ss_pred CcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 376 NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 376 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
++|+|||+.....++.+...++.-..++. +|..+ ++++| .|+-+.||.++
T Consensus 272 ksirVwDm~kRt~v~tfrrendRFW~laa----hP~lN-LfAAg-HDsGm~VFkle 321 (1202)
T KOG0292|consen 272 KSIRVWDMTKRTSVQTFRRENDRFWILAA----HPELN-LFAAG-HDSGMIVFKLE 321 (1202)
T ss_pred ccEEEEecccccceeeeeccCCeEEEEEe----cCCcc-eeeee-cCCceEEEEEc
Confidence 99999999999999888877666555555 89988 55555 66667777654
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=8.5e-28 Score=212.14 Aligned_cols=256 Identities=23% Similarity=0.354 Sum_probs=208.0
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecC---CCCEEEEEeCCCcEEEEeCCCCceeEEE-----eC
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL---RSDKLYSGSRDGTVQLWDCHTGQSASVI-----NL 232 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~---~~~~l~s~s~Dg~v~iWd~~~~~~~~~~-----~~ 232 (432)
...+++|+.||.+++|+... +....+.||.++|.+++|.. ....|+++|.|.++++|..+.+...... .+
T Consensus 115 ~~~IltgsYDg~~riWd~~G--k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GH 192 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKG--KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGH 192 (423)
T ss_pred CceEEEeecCCeeEEEecCC--ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccc
Confidence 56899999999999999865 56788999999999999833 3346999999999999999877533221 34
Q ss_pred CCceeeEE--ECCC-EEEEEcCCeEEEEEccCCc--------------------------eEeecCCcCCEEEEEEcCC-
Q 014003 233 GAEVGSLI--CEGP-WVFVGMPNVVKAWHIESSA--------------------------EFSLDGPVGEVYSMVVANE- 282 (432)
Q Consensus 233 ~~~~~~~~--~~~~-~l~~~~~~~i~vwd~~~~~--------------------------~~~~~~~~~~v~~l~~~~~- 282 (432)
...+.++. .++. ++.++.|..+++|+..... .+.+.+|..+|.++.|.+.
T Consensus 193 k~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~ 272 (423)
T KOG0313|consen 193 KRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDAT 272 (423)
T ss_pred ccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCC
Confidence 55666666 3444 5556699999999932110 2367899999999999987
Q ss_pred EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCc---eEEEecCCCC
Q 014003 283 MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLE---AVMTLNGHTD 357 (432)
Q Consensus 283 ~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~---~~~~~~~~~~ 357 (432)
.+++++.|.+|+.||+.++.. ...+. ...++.|++.. .++|++|+.|..|++||.+++. ..++|.+|.+
T Consensus 273 v~yS~SwDHTIk~WDletg~~-----~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n 346 (423)
T KOG0313|consen 273 VIYSVSWDHTIKVWDLETGGL-----KSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN 346 (423)
T ss_pred ceEeecccceEEEEEeecccc-----eeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh
Confidence 999999999999999999863 34443 35678888887 7889999999999999999763 4678999999
Q ss_pred CcEEEEEc---CCEEEEEeCCCcEEEEEcCCCC-ceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 358 APMSLLCW---DQYLLSCSLDNTIKVWIMTEEG-NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 358 ~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
.|.++.++ ...|++++.|+++++||+++.+ ++..+.+|...+-++.| .++. ++++|+.|++|+|+.-
T Consensus 347 wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW-----~~~~-~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 347 WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDW-----NEGG-LIVSGGADNKLRIFKG 417 (423)
T ss_pred hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEec-----cCCc-eEEeccCcceEEEecc
Confidence 99999999 4789999999999999999988 88899999887766555 3555 8999999999999864
No 51
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=1.5e-29 Score=224.99 Aligned_cols=232 Identities=19% Similarity=0.286 Sum_probs=203.0
Q ss_pred CceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC
Q 014003 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (432)
Q Consensus 153 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 232 (432)
..++..+.+..+++|+..|.+.+|+...- .....+++|.++|.++.|++++.+++||+.+|.|++|+.+-.....
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~f-nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~---- 174 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSF-NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI---- 174 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCcee-eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH----
Confidence 46677777889999999999999998432 3344578999999999999999999999999999999986432211
Q ss_pred CCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccce
Q 014003 233 GAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAA 310 (432)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~ 310 (432)
....|...|.+++|+|+ .+++++.||+|+|||....+. -.
T Consensus 175 ---------------------------------~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-----e~ 216 (464)
T KOG0284|consen 175 ---------------------------------IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-----ER 216 (464)
T ss_pred ---------------------------------hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-----hh
Confidence 11244588999999988 999999999999999988764 45
Q ss_pred eeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCC
Q 014003 311 LLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEE 386 (432)
Q Consensus 311 ~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~ 386 (432)
.+.+|.-.|.+++|+ ...+++|+.|..|++||.+++.++.++.+|...|+.+.|. +++|+++|.|..++++|+++.
T Consensus 217 vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m 296 (464)
T KOG0284|consen 217 VLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM 296 (464)
T ss_pred eeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh
Confidence 568999999999998 7789999999999999999999999999999999999999 799999999999999999999
Q ss_pred CceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 387 GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+.+..+.+|...+..+.+ +|-...+|.+|+.||.|..|.+.
T Consensus 297 kEl~~~r~Hkkdv~~~~W----hP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 297 KELFTYRGHKKDVTSLTW----HPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred HHHHHhhcchhhheeecc----ccccccceeeccCCCceEEEecc
Confidence 999999999999887777 78777799999999999999874
No 52
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=6.2e-28 Score=207.02 Aligned_cols=243 Identities=23% Similarity=0.393 Sum_probs=197.6
Q ss_pred EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC-ceeEEEe-CCCceeeEE--ECCC-EEEEEcCCeEEEE
Q 014003 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-QSASVIN-LGAEVGSLI--CEGP-WVFVGMPNVVKAW 257 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~-~~~~~~~-~~~~~~~~~--~~~~-~l~~~~~~~i~vw 257 (432)
.++..+.+|++.|..+.|+|+|.+||||+.|..|.+|++... +...+++ +.+.+..+. .++. ++.++.|..++.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 456678899999999999999999999999999999996522 2233333 334454444 3444 5557799999999
Q ss_pred EccCCceE-eecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEE
Q 014003 258 HIESSAEF-SLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYS 331 (432)
Q Consensus 258 d~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s 331 (432)
|.++++.. ....|..-|.++....- ++.+++.|+++++||+++... ++.+. ....++++.|. +..+.+
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-----~~t~~-~kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-----IKTFE-NKYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-----hhccc-cceeEEEEEecccccceee
Confidence 99999865 67888888998885533 888999999999999998642 44332 35678899997 889999
Q ss_pred EeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCC----CceeEEeeccCCcceEEEe
Q 014003 332 GSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEE----GNLEVAYTHNEDHGVLALG 405 (432)
Q Consensus 332 gs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~ 405 (432)
|+-|+.|++||++......++.||..+|+.+..+ |.++++-+.|.++++||++.. .++..+.++......-.+.
T Consensus 192 ggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 192 GGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred ccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 9999999999999999999999999999999888 899999999999999999853 3466677766655555666
Q ss_pred eeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 406 GLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 406 ~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+.|+|++. .+.+|+.|..+++||..+
T Consensus 272 cswsp~~~-~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 272 CSWSPNGT-KITAGSADRFVYVWDTTS 297 (338)
T ss_pred eeccCCCC-ccccccccceEEEeeccc
Confidence 77899999 899999999999999753
No 53
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=5.2e-28 Score=228.21 Aligned_cols=275 Identities=25% Similarity=0.376 Sum_probs=216.0
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeecc-Cc
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS-GN 163 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 163 (432)
.++||+..|..+++.++. .++++|.||++++|+-.+.+..... . .. +....+ ...+|+.... ..
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~----~---~~---~~~g~i----~~~i~y~e~~~~~ 73 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETH----A---FE---GPKGFI----ANSICYAESDKGR 73 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccce----e---cc---cCccee----eccceeccccCcc
Confidence 679999999888876665 6888888999999964443321100 0 00 000010 1236777533 36
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECC
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~ 243 (432)
++.|+.|.+|.+|..... .++.+|++|+..|.+++...++. ++|||.|.++++|-...- ..
T Consensus 74 l~~g~~D~~i~v~~~~~~-~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l--~~--------------- 134 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQA-EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL--VY--------------- 134 (745)
T ss_pred eEeecccceEEEEecCCC-CchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh--hc---------------
Confidence 999999999999999887 88999999999999999877777 999999999999986432 21
Q ss_pred CEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEE
Q 014003 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (432)
Q Consensus 244 ~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l 322 (432)
.+.+|...|+++..-|+ .+++|+.|.+|++|.-.+ .++++.+|++.|+.+
T Consensus 135 ----------------------~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~~-------~l~tf~gHtD~VRgL 185 (745)
T KOG0301|consen 135 ----------------------SLQGHTASVWAVASLPENTYVTGSADKTIKLWKGGT-------LLKTFSGHTDCVRGL 185 (745)
T ss_pred ----------------------ccCCcchheeeeeecCCCcEEeccCcceeeeccCCc-------hhhhhccchhheeee
Confidence 24789999999988887 999999999999998532 578899999999999
Q ss_pred EEe-CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCc
Q 014003 323 AVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDH 399 (432)
Q Consensus 323 ~~~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 399 (432)
++- +..+++++.||.|+.|++ +++++..+.+|+.-+.+++.. ++.++++++|++++||+.. ++.+.+......+
T Consensus 186 ~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsi 262 (745)
T KOG0301|consen 186 AVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSI 262 (745)
T ss_pred EEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccce
Confidence 885 779999999999999999 899999999999999999854 7899999999999999886 4444444332232
Q ss_pred ceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 400 GVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 400 ~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
|++..-++|. +++|+.||.||||...
T Consensus 263 ----Wsa~~L~NgD--Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 263 ----WSAKVLLNGD--IVVGGSDGRVRVFTVD 288 (745)
T ss_pred ----EEEEEeeCCC--EEEeccCceEEEEEec
Confidence 3333357887 8889999999999753
No 54
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=6.5e-29 Score=207.80 Aligned_cols=274 Identities=17% Similarity=0.309 Sum_probs=225.8
Q ss_pred CCCCCCCCCCCCC---CCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccC
Q 014003 86 VSNHKKSPPSYNC---PKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG 162 (432)
Q Consensus 86 ~~gh~~~v~~~~~---s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (432)
-.||+.+|..++| .|+|.+|.|++.||.-.+-+-+
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~------------------------------------------ 47 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGD------------------------------------------ 47 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCC------------------------------------------
Confidence 3789999999999 4899999999999966554211
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE-
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC- 241 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~- 241 (432)
++ .-+.++.||+++|.+..++.+..+.++++.|-+.++||.-+|..+..+++..-+..+..
T Consensus 48 -----------------tg-dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~ 109 (334)
T KOG0278|consen 48 -----------------TG-DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFS 109 (334)
T ss_pred -----------------CC-CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEec
Confidence 11 23778999999999999999999999999999999999999999999999888877764
Q ss_pred -CCC-EEEEEcCCeEEEEEccCCc--eEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeecc
Q 014003 242 -EGP-WVFVGMPNVVKAWHIESSA--EFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH 315 (432)
Q Consensus 242 -~~~-~l~~~~~~~i~vwd~~~~~--~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h 315 (432)
+.. ++.++.+..++++|++..+ .....+|.+.|..+.|... .++++++|++|++||.++++. ++.+. -
T Consensus 110 ~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~-----v~sL~-~ 183 (334)
T KOG0278|consen 110 QDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE-----VQSLE-F 183 (334)
T ss_pred ccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE-----EEEEe-c
Confidence 444 5556688999999998876 3467799999998888654 888889999999999999863 55554 4
Q ss_pred ccCeEEEEEe-CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEE
Q 014003 316 TRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVA 392 (432)
Q Consensus 316 ~~~v~~l~~~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 392 (432)
..+|+++.++ ...+++-..-+.|..||..+..+++.++- ...|.+.+.. ...+++|+.|..++.||..+++.+..+
T Consensus 184 ~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 184 NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred CCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeec
Confidence 6778898887 44555556678899999999999988863 3345555555 578999999999999999999998885
Q ss_pred -eeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 393 -YTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 393 -~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.+|..++.++.| +|+|. +.++|++||+|++|.+.
T Consensus 263 nkgh~gpVhcVrF----SPdGE-~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 263 NKGHFGPVHCVRF----SPDGE-LYASGSEDGTIRLWQTT 297 (334)
T ss_pred ccCCCCceEEEEE----CCCCc-eeeccCCCceEEEEEec
Confidence 778888877777 89999 99999999999999863
No 55
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=9.4e-27 Score=226.91 Aligned_cols=272 Identities=17% Similarity=0.189 Sum_probs=195.5
Q ss_pred CccccccCCCCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCC
Q 014003 74 CRFAHTESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK 153 (432)
Q Consensus 74 ~~~l~~~~~~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (432)
.+|-|.......-+.|-..|...+.++|+..+++++.+..+..|+..++.
T Consensus 4 sk~rh~~g~~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~------------------------------ 53 (493)
T PTZ00421 4 SRFRHTQGVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGST------------------------------ 53 (493)
T ss_pred ccccccccccCCcccceeccccccccCCCCCcEeECCceEEEEEecCCce------------------------------
Confidence 34555444444555677778888888888878888878888888533221
Q ss_pred ceEEeeccCceeeCCCCCeEEEEeCCCCc--EEEEEEecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeEEE
Q 014003 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGF--TMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVI 230 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~--~~~~~l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~~~~~ 230 (432)
..++..+.+. .....+.+|.+.|++++|+| ++++|++|+.|++|++||+.++......
T Consensus 54 -------------------~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~ 114 (493)
T PTZ00421 54 -------------------AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI 114 (493)
T ss_pred -------------------EEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc
Confidence 1111111110 11224689999999999999 8899999999999999999765321100
Q ss_pred eCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccc
Q 014003 231 NLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQ 307 (432)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~ 307 (432)
......+.+|...|.++.|+|+ +|++++.|+.|++||+.++.
T Consensus 115 ------------------------------~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~----- 159 (493)
T PTZ00421 115 ------------------------------SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK----- 159 (493)
T ss_pred ------------------------------CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-----
Confidence 0112345788999999999975 89999999999999998764
Q ss_pred cceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcE-EEEEc--CCEEEEEe----CCCcE
Q 014003 308 LAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPM-SLLCW--DQYLLSCS----LDNTI 378 (432)
Q Consensus 308 ~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~-~~~~~--~~~l~s~s----~dg~i 378 (432)
....+.+|...|.+++|+ +++|++++.|+.|++||+++++.+.++.+|..... .+.+. +..+++++ .|+.|
T Consensus 160 ~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 160 AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 466788899999999997 88999999999999999999999999999987643 44444 45666654 47999
Q ss_pred EEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEe-CCCeEEEeeCCC
Q 014003 379 KVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC-NDDSVHLYELPS 432 (432)
Q Consensus 379 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~-~Dg~I~iwdl~s 432 (432)
++||+++............ ........|++++. +|++++ .|+.|++||+.+
T Consensus 240 klWDlr~~~~p~~~~~~d~--~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 240 MLWDTRKMASPYSTVDLDQ--SSALFIPFFDEDTN-LLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred EEEeCCCCCCceeEeccCC--CCceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeC
Confidence 9999987654333322111 11223345689999 565555 699999999863
No 56
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=1.8e-27 Score=209.22 Aligned_cols=278 Identities=17% Similarity=0.250 Sum_probs=216.9
Q ss_pred CCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccC
Q 014003 83 TLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG 162 (432)
Q Consensus 83 ~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (432)
..+|.+|+++|.+++.+|+...+||||.|....||
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW--------------------------------------------- 91 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLW--------------------------------------------- 91 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEE---------------------------------------------
Confidence 34678899998888888888888888877766666
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEe-CCCceeeEE-
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN-LGAEVGSLI- 240 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~~~~~- 240 (432)
+..++ .....+.+|++.|+++.|+.+|.+||||+.+|.|+||+..++.....+. ....+.-+.
T Consensus 92 --------------~~~~g-e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~W 156 (399)
T KOG0296|consen 92 --------------DISTG-EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKW 156 (399)
T ss_pred --------------EccCC-cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEe
Confidence 44344 3577789999999999999999999999999999999999998888776 233343333
Q ss_pred -ECCCEEEEE-cCCeEEEEEccC-CceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeee-c
Q 014003 241 -CEGPWVFVG-MPNVVKAWHIES-SAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLK-G 314 (432)
Q Consensus 241 -~~~~~l~~~-~~~~i~vwd~~~-~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~-~ 314 (432)
+...++++| .||.+.+|.+.+ .....+.+|..++++=.+.|+ .++++..||+|++||..++.+ ...+. .
T Consensus 157 Hp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p-----~~~~~~~ 231 (399)
T KOG0296|consen 157 HPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP-----LHKITQA 231 (399)
T ss_pred cccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCce-----eEEeccc
Confidence 456666655 899999999998 556678899999999888888 999999999999999999853 33333 2
Q ss_pred cccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecC--------CCCCcEEEEEc---C--CEEEEEeCCCcEE
Q 014003 315 HTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNG--------HTDAPMSLLCW---D--QYLLSCSLDNTIK 379 (432)
Q Consensus 315 h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~--------~~~~v~~~~~~---~--~~l~s~s~dg~i~ 379 (432)
......++.++ +..++.|+.++.+++-+..+|+.+....+ +...+.++.+. . .+.|+|+.||+|.
T Consensus 232 e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~ 311 (399)
T KOG0296|consen 232 EGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIA 311 (399)
T ss_pred ccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEE
Confidence 23345677776 88999999999999999999999888773 33444444433 2 6789999999999
Q ss_pred EEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 380 VWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 380 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
|||+..... +....|...+..+.| .+ .. +|++++.||.|+.||.+|
T Consensus 312 iyD~a~~~~-R~~c~he~~V~~l~w----~~-t~-~l~t~c~~g~v~~wDaRt 357 (399)
T KOG0296|consen 312 IYDLAASTL-RHICEHEDGVTKLKW----LN-TD-YLLTACANGKVRQWDART 357 (399)
T ss_pred EEecccchh-heeccCCCceEEEEE----cC-cc-hheeeccCceEEeeeccc
Confidence 999987654 445566666655555 45 34 899999999999999875
No 57
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=9.7e-29 Score=206.77 Aligned_cols=241 Identities=22% Similarity=0.275 Sum_probs=210.8
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
+++||++.||+.....+..+.||++.|=+.+|||..++.... ..-++|-.+.+.|......+
T Consensus 54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelh------------------sf~hkhivk~~af~~ds~~l 115 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELH------------------SFEHKHIVKAVAFSQDSNYL 115 (334)
T ss_pred eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhh------------------hhhhhheeeeEEecccchhh
Confidence 779999999999999999999999999999999866554211 11122333566777788899
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--EC
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CE 242 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~~ 242 (432)
++|+.++.+||+|++....+...+.+|.+.|..+-|....+.+++++.|++||+||..++..++.+....++.++. .+
T Consensus 116 ltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~d 195 (334)
T KOG0278|consen 116 LTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQD 195 (334)
T ss_pred hccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccC
Confidence 9999999999999988878888999999999999999888999999999999999999999999999998887655 69
Q ss_pred CCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCcccccee-eeccccCe
Q 014003 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAAL-LKGHTRPV 319 (432)
Q Consensus 243 ~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~-~~~h~~~v 319 (432)
+.++.....+.|.+||.++-..+........|.+...+|+ .+++|++|..++.||..++.. +.. .++|-++|
T Consensus 196 G~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE-----i~~~nkgh~gpV 270 (334)
T KOG0278|consen 196 GRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE-----IGSYNKGHFGPV 270 (334)
T ss_pred CCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCce-----eeecccCCCCce
Confidence 9999999999999999999998888888888999888888 899999999999999999864 333 48999999
Q ss_pred EEEEEe--CCEEEEEeCCCeEEEEECCCCce
Q 014003 320 TCLAVG--GKRLYSGSMDNTIRVWDLDTLEA 348 (432)
Q Consensus 320 ~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~ 348 (432)
.|+.|+ |...++||+||+|++|.+..++.
T Consensus 271 hcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 271 HCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 999997 88999999999999999876554
No 58
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.7e-27 Score=229.95 Aligned_cols=272 Identities=19% Similarity=0.236 Sum_probs=211.4
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.|.+|.++|.+++|.|.+-+++|||.|-+|+||+.........-.++++.. ..+-|+.--+.+
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYV-----------------Rt~~FHheyPWI 108 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYV-----------------RTVFFHHEYPWI 108 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccccee-----------------EEeeccCCCceE
Confidence 678999999999999999999999999999999887766544444443221 234567777899
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC--CCceeeEEEC
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL--GAEVGSLICE 242 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~--~~~~~~~~~~ 242 (432)
++++.|.+|+||+..+. +++..+.||...|.|.+|+|...+++|+|-|.+||+||+..-+....-+. ....... ..
T Consensus 109 lSASDDQTIrIWNwqsr-~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~-~~ 186 (1202)
T KOG0292|consen 109 LSASDDQTIRIWNWQSR-KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ-QG 186 (1202)
T ss_pred EEccCCCeEEEEeccCC-ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcc-cc
Confidence 99999999999999998 88999999999999999999999999999999999999864322211111 0000000 00
Q ss_pred CCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeE
Q 014003 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (432)
Q Consensus 243 ~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 320 (432)
..-+..+.|-.|+ ..+++|...|+.++|+|. ++++|+.|..|++|.+...+. + -+.+..+|.+.|.
T Consensus 187 ~~dLfg~~DaVVK---------~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa--W-EvDtcrgH~nnVs 254 (1202)
T KOG0292|consen 187 NSDLFGQTDAVVK---------HVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA--W-EVDTCRGHYNNVS 254 (1202)
T ss_pred chhhcCCcCeeee---------eeecccccccceEEecCCcceEEecCCcceeeEEEeccccc--e-eehhhhcccCCcc
Confidence 0112222222222 356899999999999997 999999999999999887653 2 3456789999999
Q ss_pred EEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcC-CEEEEEeCCCcEEEEEcCCCC
Q 014003 321 CLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD-QYLLSCSLDNTIKVWIMTEEG 387 (432)
Q Consensus 321 ~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~s~dg~i~iwd~~~~~ 387 (432)
++-|+ .+.+++.++|++|+|||+...+.++++...++.-..++.++ --|++++.|+-+.+|.+....
T Consensus 255 svlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleREr 324 (1202)
T KOG0292|consen 255 SVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERER 324 (1202)
T ss_pred eEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccC
Confidence 99998 58999999999999999999999999987777777787773 345556678888899886544
No 59
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.1e-26 Score=192.71 Aligned_cols=229 Identities=27% Similarity=0.402 Sum_probs=189.1
Q ss_pred ceEEeec-cCceeeCCCCCeEEEEeCCC--CcEEEEEE-ecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 014003 154 NVCYHWL-SGNCVKGDECRFWHSWFCGE--GFTMLAKL-EGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV 229 (432)
Q Consensus 154 ~~~~~~~-~~~~~~g~~d~~i~vw~~~~--~~~~~~~l-~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~ 229 (432)
.+|.++. +..+++++.|+.|++|+... ...+...+ .+|+..|.+++|+|.|++|+++|.|.++.||.-..++....
T Consensus 19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv 98 (312)
T KOG0645|consen 19 SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECV 98 (312)
T ss_pred EEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEE
Confidence 4455555 33799999999999999974 23444444 47999999999999999999999999999998775543321
Q ss_pred EeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccc
Q 014003 230 INLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQ 307 (432)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~ 307 (432)
-.+++|..+|.+++|+++ +||+++.|.+|-+|.+..+.. ++
T Consensus 99 -----------------------------------~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE--fe 141 (312)
T KOG0645|consen 99 -----------------------------------ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE--FE 141 (312)
T ss_pred -----------------------------------eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc--EE
Confidence 245799999999999988 999999999999999985544 78
Q ss_pred cceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECC---CCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEE
Q 014003 308 LAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLD---TLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKV 380 (432)
Q Consensus 308 ~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~---~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~i 380 (432)
....++.|...|.-+.|+ ..+|++++.|.+|++|+-. ..++++++.+|+..|.+++|+ |..|++++.|++++|
T Consensus 142 c~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~I 221 (312)
T KOG0645|consen 142 CIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSI 221 (312)
T ss_pred EEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEe
Confidence 899999999999999998 5899999999999999876 457899999999999999999 789999999999999
Q ss_pred EEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 381 WIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 381 wd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
|..... ....|...+..+++ . +| .|++++.|+.|++|.-
T Consensus 222 w~~~~~----~~~~~sr~~Y~v~W----~-~~--~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 222 WRLYTD----LSGMHSRALYDVPW----D-NG--VIASGGGDDAIRLFKE 260 (312)
T ss_pred eeeccC----cchhcccceEeeee----c-cc--ceEeccCCCEEEEEEe
Confidence 986532 22234555555555 3 33 7999999999999864
No 60
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1e-25 Score=220.75 Aligned_cols=235 Identities=17% Similarity=0.226 Sum_probs=177.1
Q ss_pred CceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCC-CCEEEEEeCCCcEEEEeCCCCce-eEEE
Q 014003 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQS-ASVI 230 (432)
Q Consensus 153 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~-~~~l~s~s~Dg~v~iWd~~~~~~-~~~~ 230 (432)
..+++.|.. ..|+.++.|++|+.... ..+..+.+|.+.|.+++|+|+ +++|+||+.|++|++||+.++.. ...+
T Consensus 39 ~~~A~~w~~---~gGG~~gvI~L~~~~r~-~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i 114 (568)
T PTZ00420 39 GFVAVPWEV---EGGGLIGAIRLENQMRK-PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI 114 (568)
T ss_pred CeEEEEEEc---CCCCceeEEEeeecCCC-ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc
Confidence 344555532 34788999999999776 678889999999999999996 78999999999999999986432 1100
Q ss_pred eCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccc
Q 014003 231 NLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQ 307 (432)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~ 307 (432)
. .....+.+|...|.+++|+|+ .+++++.|+.|++||++++..
T Consensus 115 ~------------------------------~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~---- 160 (568)
T PTZ00420 115 K------------------------------DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR---- 160 (568)
T ss_pred c------------------------------cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE----
Confidence 0 011234678889999999997 567899999999999988742
Q ss_pred cceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEE-------cCCEEEEEeCCC--
Q 014003 308 LAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLC-------WDQYLLSCSLDN-- 376 (432)
Q Consensus 308 ~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~-------~~~~l~s~s~dg-- 376 (432)
...+. |...|.+++|+ |++|++++.|+.|+|||+++++.+.++.+|.+.+.+..+ .+++|++++.|+
T Consensus 161 -~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~ 238 (568)
T PTZ00420 161 -AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNN 238 (568)
T ss_pred -EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCC
Confidence 33443 56789999997 999999999999999999999999999999887544332 257899988775
Q ss_pred --cEEEEEcCCC-CceeEEeeccCCcceEEEeeeeCC-CCCcEEEEEeCCCeEEEeeCC
Q 014003 377 --TIKVWIMTEE-GNLEVAYTHNEDHGVLALGGLNDP-DGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 377 --~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~sp-~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+|+|||++.. +++... .+......+ ...+++ +|. ++++|+.|+.|++|++.
T Consensus 239 ~R~VkLWDlr~~~~pl~~~-~ld~~~~~L--~p~~D~~tg~-l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 239 MREMKLWDLKNTTSALVTM-SIDNASAPL--IPHYDESTGL-IYLIGKGDGNCRYYQHS 293 (568)
T ss_pred ccEEEEEECCCCCCceEEE-EecCCccce--EEeeeCCCCC-EEEEEECCCeEEEEEcc
Confidence 7999999964 444333 332222222 122344 466 89999999999999985
No 61
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.7e-28 Score=212.52 Aligned_cols=273 Identities=16% Similarity=0.214 Sum_probs=209.5
Q ss_pred CCCCCCCCCCCCCCCCCc-eecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCc
Q 014003 85 PVSNHKKSPPSYNCPKNN-VRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g-~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (432)
.|.||+++|.++|-.|.- ..+|||+.||.|+|||+..
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq------------------------------------------ 98 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ------------------------------------------ 98 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhh------------------------------------------
Confidence 669999999999998887 7788888888877775322
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE-C
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC-E 242 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~-~ 242 (432)
. .+..++++|.+.|..|++.. ..+++++.|++|+.|.++. ..++++.....+..+.. .
T Consensus 99 -----------------R-~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 99 -----------------R-ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHHR 157 (433)
T ss_pred -----------------h-hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecccccccccccc
Confidence 2 44667889999999999875 6788999999999998874 46666666555555553 2
Q ss_pred CCEEEEEcCCeEEEEEccCCceE-eecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccC
Q 014003 243 GPWVFVGMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (432)
Q Consensus 243 ~~~l~~~~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~ 318 (432)
..-+++.....|.+||......+ .+.-....|.++.++|. .|+++..|++|.+||+++++. +.... -...
T Consensus 158 ~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P-----l~KVi-~~mR 231 (433)
T KOG0268|consen 158 KNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP-----LKKVI-LTMR 231 (433)
T ss_pred ccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc-----cceee-eecc
Confidence 23344455567889998766544 45555677899999987 888899999999999999864 22221 1233
Q ss_pred eEEEEEe--CCEEEEEeCCCeEEEEECCCC-ceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEe
Q 014003 319 VTCLAVG--GKRLYSGSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 319 v~~l~~~--~~~l~sgs~dg~I~vwd~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (432)
-..|+|+ +-.+++|++|..++.||++.. +++....+|..+|+++.|+ |+-+++||.|.+|+||.++.+.....+.
T Consensus 232 TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh 311 (433)
T KOG0268|consen 232 TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH 311 (433)
T ss_pred ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh
Confidence 4567887 667899999999999999875 5688889999999999999 8999999999999999998876655443
Q ss_pred eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 394 THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 394 ~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
... ....+++.||.|.+ ++++||+|+.||+|..
T Consensus 312 tkR---Mq~V~~Vk~S~Dsk-yi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 312 TKR---MQHVFCVKYSMDSK-YIISGSDDGNVRLWKA 344 (433)
T ss_pred Hhh---hheeeEEEEecccc-EEEecCCCcceeeeec
Confidence 321 12245566789999 9999999999999975
No 62
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.7e-28 Score=202.68 Aligned_cols=222 Identities=20% Similarity=0.301 Sum_probs=187.1
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI 240 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~ 240 (432)
..++++..||.+++||......++..++.|+..|.++.|++ +.+.++++|.|++|++|+..-.+.+.++
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf---------- 143 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF---------- 143 (311)
T ss_pred ceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee----------
Confidence 37889999999999999777789999999999999999977 5567888999999999999887777654
Q ss_pred ECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeecccc
Q 014003 241 CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 241 ~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
.+|...|+...|+|. .+++++.|+.+++||++.... ...++.|..
T Consensus 144 ---------------------------~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk-----~~~i~ah~~ 191 (311)
T KOG0277|consen 144 ---------------------------NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK-----FMSIEAHNS 191 (311)
T ss_pred ---------------------------cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc-----eeEEEeccc
Confidence 578889999999876 999999999999999988643 333888999
Q ss_pred CeEEEEEe---CCEEEEEeCCCeEEEEECCCC-ceEEEecCCCCCcEEEEEcC---CEEEEEeCCCcEEEEEcCCCCc-e
Q 014003 318 PVTCLAVG---GKRLYSGSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEEGN-L 389 (432)
Q Consensus 318 ~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~-~~~~~~~~~~~~v~~~~~~~---~~l~s~s~dg~i~iwd~~~~~~-~ 389 (432)
.|.|+.|+ .+.+++|+.|+.|++||+++. .++..+.+|.-.|..+.+++ ..|++++.|-+++|||...+.. +
T Consensus 192 Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~ 271 (311)
T KOG0277|consen 192 EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI 271 (311)
T ss_pred eeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhh
Confidence 99999996 889999999999999999975 46889999999999999994 7899999999999999985543 4
Q ss_pred eEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 390 EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
.....|.+-+ +...||+-....+++.+.|+.++||+
T Consensus 272 e~~~~HtEFv----~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 272 ETVDHHTEFV----CGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hhhhccceEE----eccccccccCceeeecccccceeeec
Confidence 4444454443 34444554444899999999999998
No 63
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.3e-26 Score=196.93 Aligned_cols=284 Identities=16% Similarity=0.219 Sum_probs=222.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeecc
Q 014003 82 QTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (432)
Q Consensus 82 ~~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (432)
|...+..-.+.|.++.|+++|.+|++++.|.+++|+|...+... ..-...+.+.+..||....
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~-----------------~ti~skkyG~~~~~Fth~~ 68 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV-----------------KTINSKKYGVDLACFTHHS 68 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCcee-----------------eEeecccccccEEEEecCC
Confidence 34445556778999999999999999999999999987776541 1111233455788888888
Q ss_pred CceeeCCC--CCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeE
Q 014003 162 GNCVKGDE--CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSL 239 (432)
Q Consensus 162 ~~~~~g~~--d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~ 239 (432)
..++.++. |.+||.-++.+. +.++.+.||...|.+|+.+|-++.++|++.|++|++||++..++...+....
T Consensus 69 ~~~i~sStk~d~tIryLsl~dN-kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~----- 142 (311)
T KOG1446|consen 69 NTVIHSSTKEDDTIRYLSLHDN-KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG----- 142 (311)
T ss_pred ceEEEccCCCCCceEEEEeecC-ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-----
Confidence 88887776 889999999888 8899999999999999999999999999999999999999888776654222
Q ss_pred EECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeecccc
Q 014003 240 ICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 240 ~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
. ...+++|+ ++|++.....|++||++.-...++.....-.+...
T Consensus 143 --------------------------------~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ 188 (311)
T KOG1446|consen 143 --------------------------------R--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEA 188 (311)
T ss_pred --------------------------------C--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcc
Confidence 1 24556666 67777777799999999876544443333334466
Q ss_pred CeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCc---EEEEE--cCCEEEEEeCCCcEEEEEcCCCCcee
Q 014003 318 PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAP---MSLLC--WDQYLLSCSLDNTIKVWIMTEEGNLE 390 (432)
Q Consensus 318 ~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v---~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~ 390 (432)
..+.|.|+ |++++.++..+.+++.|.-+|..+.++..+...- .+..+ .++++++|+.||+|.+|+++++..+.
T Consensus 189 ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 189 EWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred ceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 78889997 9999999999999999999999999998776543 33444 38999999999999999999999998
Q ss_pred EEee-ccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 391 VAYT-HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 391 ~~~~-~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
.+.+ +..++.++.+ +|.-. +++++ +..+.+|=
T Consensus 269 ~~~~~~~~~~~~~~f----nP~~~-mf~sa--~s~l~fw~ 301 (311)
T KOG1446|consen 269 VLRGPNGGPVSCVRF----NPRYA-MFVSA--SSNLVFWL 301 (311)
T ss_pred EecCCCCCCcccccc----CCcee-eeeec--CceEEEEe
Confidence 8887 4666666665 78755 55555 55777774
No 64
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.8e-27 Score=205.46 Aligned_cols=287 Identities=18% Similarity=0.246 Sum_probs=227.2
Q ss_pred CCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCc
Q 014003 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (432)
..+.||+++||.++....-..+.++|.|-+.+||.++.+........+ .++. +.+.|+.....
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH----~GSV-------------Nsikfh~s~~L 204 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGH----TGSV-------------NSIKFHNSGLL 204 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeeccc----ccce-------------eeEEeccccce
Confidence 378999999999999777779999999999999998888765444333 2332 56777777789
Q ss_pred eeeCCCCCeEEEEeC------CC---------------------------------CcEEEEEEecccCcEEEEEecCCC
Q 014003 164 CVKGDECRFWHSWFC------GE---------------------------------GFTMLAKLEGHKKAVSGIALPLRS 204 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~------~~---------------------------------~~~~~~~l~~H~~~V~~l~~~~~~ 204 (432)
+++++.|++.+||.. .. -..++..|.+|.+.|.+..|-..|
T Consensus 205 ~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg 284 (481)
T KOG0300|consen 205 LLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG 284 (481)
T ss_pred EEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc
Confidence 999999999999972 00 013667889999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--
Q 014003 205 DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-- 282 (432)
Q Consensus 205 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~-- 282 (432)
+.+++++.|.+..+||+++++.+..+ .+|..+.+.+..+|+
T Consensus 285 ~Q~vTaSWDRTAnlwDVEtge~v~~L-------------------------------------tGHd~ELtHcstHptQr 327 (481)
T KOG0300|consen 285 QQMVTASWDRTANLWDVETGEVVNIL-------------------------------------TGHDSELTHCSTHPTQR 327 (481)
T ss_pred ceeeeeeccccceeeeeccCceeccc-------------------------------------cCcchhccccccCCcce
Confidence 99999999999999999999887654 678888888888888
Q ss_pred EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe-CCEEEEEeCCCeEEEEECCCCc-eEEEecCCCCCcE
Q 014003 283 MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLE-AVMTLNGHTDAPM 360 (432)
Q Consensus 283 ~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~vwd~~~~~-~~~~~~~~~~~v~ 360 (432)
++++++.|.+.++||++.. .+.+..+++|.+.|++..|+ +..+++|+.|.+|+|||+++.+ ++.++. ...++.
T Consensus 328 LVvTsSrDtTFRLWDFRea----I~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~N 402 (481)
T KOG0300|consen 328 LVVTSSRDTTFRLWDFREA----IQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPAN 402 (481)
T ss_pred EEEEeccCceeEeccchhh----cceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeee-cCCccc
Confidence 8888999999999999965 45688899999999999999 9999999999999999998764 566665 456677
Q ss_pred EEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeC---CCCCcEEEEEeCCCeEEEeeCC
Q 014003 361 SLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLND---PDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 361 ~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~s---p~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.++.+ +..|+.--.+..|++||+..................+..+++|. |-. -|++++.|..+.-|.+.
T Consensus 403 Rvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~c--nLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 403 RVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPAC--NLFTCGFDRMVAGWKIN 476 (481)
T ss_pred eeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCccc--ccccccccceeeeeEec
Confidence 77777 45777777788999999987665443332222223334444443 333 37778899999999875
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=9e-26 Score=236.38 Aligned_cols=250 Identities=17% Similarity=0.295 Sum_probs=196.4
Q ss_pred CCeEEEEeCCCCcEEEE-----EEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC----c----eeEEEeCCCce
Q 014003 170 CRFWHSWFCGEGFTMLA-----KLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG----Q----SASVINLGAEV 236 (432)
Q Consensus 170 d~~i~vw~~~~~~~~~~-----~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~----~----~~~~~~~~~~~ 236 (432)
+|.+++|+...- .... .+..|...|.+++|+|++++|++|+.|++|+|||+.+. . ....+.....+
T Consensus 457 ~gl~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKL-RVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKL 535 (793)
T ss_pred hhhhhhhcccce-EEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCce
Confidence 566777877543 2222 24469999999999999999999999999999998642 1 12223333444
Q ss_pred eeEEE---CCCEEE-EEcCCeEEEEEccCCceE-eecCCcCCEEEEEEcC-C--EEEEEECCCcEEEEECCCCCCCcccc
Q 014003 237 GSLIC---EGPWVF-VGMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVAN-E--MLFAGAQDGNILVWKGIPNTQNPFQL 308 (432)
Q Consensus 237 ~~~~~---~~~~l~-~~~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~-~--~l~~g~~dg~i~~wd~~~~~~~~~~~ 308 (432)
.++.. .+.+++ ++.|+.|++||+.+++.. .+.+|...|++++|++ + +|++|+.||.|++||++++. .
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-----~ 610 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-----S 610 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-----E
Confidence 44443 244454 558999999999987654 5678999999999985 3 89999999999999998764 3
Q ss_pred ceeeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCCc-eEEEecCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEc
Q 014003 309 AALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLE-AVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 309 ~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~-~~~~~~~~~~~v~~~~~~-~~~l~s~s~dg~i~iwd~ 383 (432)
...+..+ ..+.++.|. +.+|++|+.||.|++||+++.+ ++..+.+|...|.++.|. +.+|++++.|++|++||+
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeC
Confidence 4555544 578899884 8899999999999999998876 577888999999999987 789999999999999999
Q ss_pred CCC------CceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 384 TEE------GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 384 ~~~------~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+.. ..+..+.+|...+..+.+ +|++. +|++|+.||.|++|+..
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~----s~~~~-~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGL----SVSDG-YIATGSETNEVFVYHKA 738 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEE----cCCCC-EEEEEeCCCEEEEEECC
Confidence 753 455666677766666665 89988 99999999999999963
No 66
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=3.2e-26 Score=217.84 Aligned_cols=238 Identities=20% Similarity=0.373 Sum_probs=196.5
Q ss_pred EEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceee-EEECCCEEEEE-cCCeEEEEEccCCce
Q 014003 187 KLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS-LICEGPWVFVG-MPNVVKAWHIESSAE 264 (432)
Q Consensus 187 ~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~i~vwd~~~~~~ 264 (432)
++.||...|.+++++.+...++||+. +.+++|+..+.++++++...-...+ +.+.+.+++.| ..|.+.++|+.+...
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence 34589999999999988887777765 6899999999999999998743333 33555555555 789999999998875
Q ss_pred E-eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCc--------cccceeeeccccCeEEEEEe--CCEEEE
Q 014003 265 F-SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNP--------FQLAALLKGHTRPVTCLAVG--GKRLYS 331 (432)
Q Consensus 265 ~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~--------~~~~~~~~~h~~~v~~l~~~--~~~l~s 331 (432)
+ ....|.+.|++++..|+ .+++|+.|.+|++||..--...+ .+..++++ -.+.|.|+.++ +++|++
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaV 525 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAV 525 (888)
T ss_pred hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEE
Confidence 5 45689999999999998 99999999999999964321100 01112222 35678899887 999999
Q ss_pred EeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeC
Q 014003 332 GSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLND 409 (432)
Q Consensus 332 gs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~s 409 (432)
+--|.+++||-+.+.+..-++.||.-+|.|+..+ ++.++|||.|.+|+||-++-+.+-+.+..|...+..+.| -
T Consensus 526 sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F----~ 601 (888)
T KOG0306|consen 526 SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQF----L 601 (888)
T ss_pred EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEE----c
Confidence 9999999999999999999999999999998877 799999999999999999999999999999998877777 5
Q ss_pred CCCCcEEEEEeCCCeEEEeeCC
Q 014003 410 PDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 410 p~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
|+.. ++.++|.|+.|+-||-.
T Consensus 602 P~~~-~FFt~gKD~kvKqWDg~ 622 (888)
T KOG0306|consen 602 PKTH-LFFTCGKDGKVKQWDGE 622 (888)
T ss_pred ccce-eEEEecCcceEEeechh
Confidence 8777 89999999999999853
No 67
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.6e-26 Score=197.22 Aligned_cols=269 Identities=19% Similarity=0.240 Sum_probs=209.3
Q ss_pred CCCCCCCCCCCC-CceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeC
Q 014003 89 HKKSPPSYNCPK-NNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKG 167 (432)
Q Consensus 89 h~~~v~~~~~s~-~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 167 (432)
+.+.|-.++||| ...+++.||.||+||+|+++..+...|
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~---------------------------------------- 65 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP---------------------------------------- 65 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc----------------------------------------
Confidence 367788899988 455566888888888886554332111
Q ss_pred CCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE-C---C
Q 014003 168 DECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC-E---G 243 (432)
Q Consensus 168 ~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~-~---~ 243 (432)
+....|.++|.+++|+.+|..+++|+.|+.+++||+.+++....-.+..++..+.. . .
T Consensus 66 ------------------ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~ 127 (347)
T KOG0647|consen 66 ------------------KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNY 127 (347)
T ss_pred ------------------hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCc
Confidence 23457999999999999999999999999999999999999988889998887764 1 2
Q ss_pred CEEE-EEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEE
Q 014003 244 PWVF-VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (432)
Q Consensus 244 ~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l 322 (432)
..|+ ++.|++|+.||.+....+......+.++++..-..+++++..+..|.+|+++.+........ ..-.-.++|+
T Consensus 128 ~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~---SpLk~Q~R~v 204 (347)
T KOG0647|consen 128 QCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIE---SPLKWQTRCV 204 (347)
T ss_pred ceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhc---CcccceeeEE
Confidence 2344 55899999999999999888888999999999999999999999999999987643211111 1122345676
Q ss_pred EE--eCCEEEEEeCCCeEEEEECCCC--ceEEEecCCCC---------CcEEEEEc--CCEEEEEeCCCcEEEEEcCCCC
Q 014003 323 AV--GGKRLYSGSMDNTIRVWDLDTL--EAVMTLNGHTD---------APMSLLCW--DQYLLSCSLDNTIKVWIMTEEG 387 (432)
Q Consensus 323 ~~--~~~~l~sgs~dg~I~vwd~~~~--~~~~~~~~~~~---------~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~ 387 (432)
+. +....+.|+-+|.+.|..+..+ +.-.+|+.|.. .|.+++|+ ...|++++.||++.+||-+...
T Consensus 205 a~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~ 284 (347)
T KOG0647|consen 205 ACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART 284 (347)
T ss_pred EEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh
Confidence 65 3566699999999999999887 44556666653 36677887 5789999999999999999988
Q ss_pred ceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCC
Q 014003 388 NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND 422 (432)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~D 422 (432)
.+.....+..++.+-.| +.+|..+..+.+.|
T Consensus 285 kLk~s~~~~qpItcc~f----n~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 285 KLKTSETHPQPITCCSF----NRNGSIFAYALGYD 315 (347)
T ss_pred hhhccCcCCCccceeEe----cCCCCEEEEEeecc
Confidence 88888888888877666 78999555554544
No 68
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.4e-27 Score=221.15 Aligned_cols=287 Identities=20% Similarity=0.290 Sum_probs=216.7
Q ss_pred CCCC-CCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCCCCeE
Q 014003 95 SYNC-PKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFW 173 (432)
Q Consensus 95 ~~~~-s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 173 (432)
.+.- .|+++||.|||.||+|++|+........ ..... .. ...+..+.+.+...-.+..+++++.|-+|
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~-s~~~~---as-------me~HsDWVNDiiL~~~~~tlIS~SsDtTV 97 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP-STPYI---AS-------MEHHSDWVNDIILCGNGKTLISASSDTTV 97 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCc-ccchh---hh-------hhhhHhHHhhHHhhcCCCceEEecCCceE
Confidence 4444 4788899999999999999866543210 00000 00 00011111122222244589999999999
Q ss_pred EEEeCCCCc-EEEEEEecccCcEEEEEe-cCCCCEEEEEeCCCcEEEEeCCCCce--eEEEeCCCceeeEEECCCEEEEE
Q 014003 174 HSWFCGEGF-TMLAKLEGHKKAVSGIAL-PLRSDKLYSGSRDGTVQLWDCHTGQS--ASVINLGAEVGSLICEGPWVFVG 249 (432)
Q Consensus 174 ~vw~~~~~~-~~~~~l~~H~~~V~~l~~-~~~~~~l~s~s~Dg~v~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~ 249 (432)
++|+...+. -+..++..|++.|.|+++ .++..++||||.|+.|.+||++++.. +..+..
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~----------------- 160 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN----------------- 160 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc-----------------
Confidence 999997663 556788999999999999 78889999999999999999998843 222210
Q ss_pred cCCeEEEEEccCCceEeec-CCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe-
Q 014003 250 MPNVVKAWHIESSAEFSLD-GPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG- 325 (432)
Q Consensus 250 ~~~~i~vwd~~~~~~~~~~-~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~- 325 (432)
+. .-.+. ++...|++++.+++ .+++|+..+.+++||.++.+. +..+.+|+..|.++-.+
T Consensus 161 ----~t--------~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k-----imkLrGHTdNVr~ll~~d 223 (735)
T KOG0308|consen 161 ----VT--------VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK-----IMKLRGHTDNVRVLLVND 223 (735)
T ss_pred ----cc--------cccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccc-----eeeeeccccceEEEEEcC
Confidence 00 01112 78889999999998 899999999999999999864 66788999999999886
Q ss_pred -CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcC--CEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceE
Q 014003 326 -GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD--QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVL 402 (432)
Q Consensus 326 -~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 402 (432)
|+.++++++||+|++||+...+++.++..|...|.++..+. ..+++|+.||.|..=|+++......+.....++..+
T Consensus 224 DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l 303 (735)
T KOG0308|consen 224 DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKL 303 (735)
T ss_pred CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhh
Confidence 99999999999999999999999999999999999999885 689999999999999999976666666666666555
Q ss_pred EEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 403 ALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 403 ~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.. +-..+ -+-+++.|+.|+-|.++
T Consensus 304 ~~----~~~~~-~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 304 HL----HEHDN-SVWVTTTDSSIKRWKLE 327 (735)
T ss_pred hh----ccccC-CceeeeccccceecCCc
Confidence 55 22223 23556778888888653
No 69
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=7.6e-27 Score=201.07 Aligned_cols=293 Identities=19% Similarity=0.323 Sum_probs=224.0
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.+..|+++....+||+||.++|+||.|..|+|.+++.-... ..... +
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlak---s~~~e------------------------------m 153 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAK---SKPKE------------------------------M 153 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhh---cchhh------------------------------h
Confidence 45779999999999999999999999999999976632110 00000 0
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee---EEEeCCCceeeEE-
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSA---SVINLGAEVGSLI- 240 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~---~~~~~~~~~~~~~- 240 (432)
..|+.+ ..-..+.+|..|.++|+++.|+|....|++|+.|++|+++|....... +.++...++.++.
T Consensus 154 ~~~~~q---------a~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSf 224 (430)
T KOG0640|consen 154 ISGDTQ---------ARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISF 224 (430)
T ss_pred ccCCcc---------cCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEee
Confidence 001100 111568889999999999999999999999999999999999765433 3444455666666
Q ss_pred -ECCCEEEEEcC-CeEEEEEccCCceEe----ecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceee
Q 014003 241 -CEGPWVFVGMP-NVVKAWHIESSAEFS----LDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (432)
Q Consensus 241 -~~~~~l~~~~~-~~i~vwd~~~~~~~~----~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~ 312 (432)
+.|.++.++.+ ..+++||+.+-+.+. ..+|.+.|+++.++++ +.++|+.||.|++||--.+. ++.++
T Consensus 225 HPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r-----Cv~t~ 299 (430)
T KOG0640|consen 225 HPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR-----CVRTI 299 (430)
T ss_pred cCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH-----HHHHH
Confidence 58889988855 689999999988763 4578889999999988 89999999999999977764 34444
Q ss_pred -ecccc-CeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCC-----cEEEEEc--CCEEEEEeC-CCcEEE
Q 014003 313 -KGHTR-PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA-----PMSLLCW--DQYLLSCSL-DNTIKV 380 (432)
Q Consensus 313 -~~h~~-~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~-----v~~~~~~--~~~l~s~s~-dg~i~i 380 (432)
+.|.+ .|.+..|. ++++++.+.|..+++|.+.+++++..+.|.... -+...|+ .+|++.-.+ .+.+.-
T Consensus 300 ~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcs 379 (430)
T KOG0640|consen 300 GNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCS 379 (430)
T ss_pred HhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceee
Confidence 35554 57777785 999999999999999999999999999765221 2333444 567766654 567999
Q ss_pred EEcCCCCceeEEe-eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 381 WIMTEEGNLEVAY-THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 381 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
||.++...+.... +|++.+..+.- ||.+. .++++++|-.+|+|-
T Consensus 380 WdaRtadr~~l~slgHn~a~R~i~H----SP~~p-~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 380 WDARTADRVALLSLGHNGAVRWIVH----SPVEP-AFMTCSDDFRARFWY 424 (430)
T ss_pred ccccchhhhhhcccCCCCCceEEEe----CCCCC-ceeeecccceeeeee
Confidence 9999987665543 67777666655 88887 899999999999995
No 70
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=3.3e-25 Score=203.14 Aligned_cols=237 Identities=29% Similarity=0.474 Sum_probs=194.2
Q ss_pred EEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC-CceeeEE--ECCCEEE-EEcCCeEEEEEcc
Q 014003 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG-AEVGSLI--CEGPWVF-VGMPNVVKAWHIE 260 (432)
Q Consensus 185 ~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~-~~~~~~~--~~~~~l~-~~~~~~i~vwd~~ 260 (432)
+.++++|.++|++++|+|++++|++++.||.|++||+.+++....+... ..+..+. +++..++ ++.++.+++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 3457799999999999999999999999999999999988776666543 3333444 3554555 5579999999999
Q ss_pred CCc-eEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCC
Q 014003 261 SSA-EFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMD 335 (432)
Q Consensus 261 ~~~-~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d 335 (432)
+++ ......+...+.++.+.++ ++++++.+|.|.+||+.+.+ ....+..|...+.++.++ +.++++++.|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 156 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-----CLTTLRGHTDWVNSVAFSPDGTFVASSSQD 156 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-----EEEEeccCCCcEEEEEEcCcCCEEEEEcCC
Confidence 854 4456677789999999986 66677779999999998653 456667888999999997 5777877779
Q ss_pred CeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCC
Q 014003 336 NTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGN 413 (432)
Q Consensus 336 g~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~ 413 (432)
+.|++||+++++.+..+..|...+.++.+. ++.+++++.|+.|++||++..+.+..+..+...+..+.+ +|++.
T Consensus 157 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~----~~~~~ 232 (289)
T cd00200 157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAF----SPDGY 232 (289)
T ss_pred CcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEE----cCCCc
Confidence 999999999999999999999899999998 458999999999999999988777766667666666555 78866
Q ss_pred cEEEEEeCCCeEEEeeCC
Q 014003 414 PVLICSCNDDSVHLYELP 431 (432)
Q Consensus 414 ~~l~sg~~Dg~I~iwdl~ 431 (432)
++++++.||.|++||+.
T Consensus 233 -~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 233 -LLASGSEDGTIRVWDLR 249 (289)
T ss_pred -EEEEEcCCCcEEEEEcC
Confidence 88888889999999986
No 71
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=2.4e-27 Score=205.25 Aligned_cols=280 Identities=16% Similarity=0.186 Sum_probs=217.3
Q ss_pred CCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceee
Q 014003 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVK 166 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (432)
-|.+.-+-+..|||||+||+|||.||-|.+||..+++...... . .....-.+.+...-+++|.....-+++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk----Y-----QAqd~fMMmd~aVlci~FSRDsEMlAs 280 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK----Y-----QAQDNFMMMDDAVLCISFSRDSEMLAS 280 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhh----h-----hhhcceeecccceEEEeecccHHHhhc
Confidence 3455667899999999999999999999999987776421100 0 001111222222235566666778999
Q ss_pred CCCCCeEEEEeCCCCcEEEEEEe-cccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCc-eeeEE--EC
Q 014003 167 GDECRFWHSWFCGEGFTMLAKLE-GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE-VGSLI--CE 242 (432)
Q Consensus 167 g~~d~~i~vw~~~~~~~~~~~l~-~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-~~~~~--~~ 242 (432)
|+.||.|+||.+.++ .++..+. +|+..|+++.|+.|+..+++++.|.++++.-+.+|++++.+..+.. +.... .+
T Consensus 281 GsqDGkIKvWri~tG-~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 281 GSQDGKIKVWRIETG-QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD 359 (508)
T ss_pred cCcCCcEEEEEEecc-hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCC
Confidence 999999999999999 6666665 9999999999999999999999999999999999999999986544 33322 45
Q ss_pred CC-EEEEEcCCeEEEEEccCCceEe---ecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeec-
Q 014003 243 GP-WVFVGMPNVVKAWHIESSAEFS---LDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG- 314 (432)
Q Consensus 243 ~~-~l~~~~~~~i~vwd~~~~~~~~---~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~- 314 (432)
|. ++.++.|+.|++|+.++.+... ..+...+|.++..-|. .++++...++|++.++... .++.+..
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ------vVrsfsSG 433 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ------VVRSFSSG 433 (508)
T ss_pred CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce------EEeeeccC
Confidence 55 5557799999999999988653 3445567777777655 8999999999999998753 3444432
Q ss_pred --cccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEE
Q 014003 315 --HTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWI 382 (432)
Q Consensus 315 --h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd 382 (432)
..+...+...+ |.++++.++|+.++.|.+.+|++.+++..|...+..+.-+ .+.|++-+.||.+++|.
T Consensus 434 kREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 434 KREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 12233333344 9999999999999999999999999999999999999877 58899999999999994
No 72
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.3e-26 Score=193.47 Aligned_cols=246 Identities=24% Similarity=0.326 Sum_probs=191.7
Q ss_pred CCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceee
Q 014003 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVK 166 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (432)
.+|++-|..+...-.|++|||++.|++|||..+...+.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------------------------------ 45 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------------------------------ 45 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------------------------------
Confidence 45777777777777777777777777777764332211
Q ss_pred CCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEec-C-CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCC
Q 014003 167 GDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALP-L-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (432)
Q Consensus 167 g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~-~-~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (432)
.+++.+|.||+++|..++|. | .|..||+++.||.|.||.-++++-.+.
T Consensus 46 ---------------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~--------------- 95 (299)
T KOG1332|consen 46 ---------------SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA--------------- 95 (299)
T ss_pred ---------------ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhh---------------
Confidence 16788999999999999993 3 799999999999999999887743222
Q ss_pred EEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC----EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeE
Q 014003 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (432)
Q Consensus 245 ~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 320 (432)
.....|...|+++++.|. .|++++.||.|.+++.+.... .........|.-.|+
T Consensus 96 --------------------~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~--w~t~ki~~aH~~Gvn 153 (299)
T KOG1332|consen 96 --------------------YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG--WTTSKIVFAHEIGVN 153 (299)
T ss_pred --------------------hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC--ccchhhhhccccccc
Confidence 234678899999999988 899999999999999887622 344556778999999
Q ss_pred EEEEe-----C-----------CEEEEEeCCCeEEEEECCCC--ceEEEecCCCCCcEEEEEcC------CEEEEEeCCC
Q 014003 321 CLAVG-----G-----------KRLYSGSMDNTIRVWDLDTL--EAVMTLNGHTDAPMSLLCWD------QYLLSCSLDN 376 (432)
Q Consensus 321 ~l~~~-----~-----------~~l~sgs~dg~I~vwd~~~~--~~~~~~~~~~~~v~~~~~~~------~~l~s~s~dg 376 (432)
++++. | +.|++|+.|..|+||+..++ +..++|.+|.+.|..+++.+ .+|+++|.||
T Consensus 154 sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg 233 (299)
T KOG1332|consen 154 SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG 233 (299)
T ss_pred eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence 99884 2 57999999999999998875 44567899999999999873 5899999999
Q ss_pred cEEEEEcCCCCceeE-EeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 377 TIKVWIMTEEGNLEV-AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 377 ~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
++.||-.+....... ...+. -....+...||+.|. +|+.++.|+.|.+|.
T Consensus 234 ~viIwt~~~e~e~wk~tll~~--f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 234 TVIIWTKDEEYEPWKKTLLEE--FPDVVWRVSWSLSGN-ILAVSGGDNKVTLWK 284 (299)
T ss_pred cEEEEEecCccCccccccccc--CCcceEEEEEecccc-EEEEecCCcEEEEEE
Confidence 999998774322211 11122 234556667799999 999999999999996
No 73
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=6.8e-26 Score=204.79 Aligned_cols=291 Identities=19% Similarity=0.282 Sum_probs=216.3
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCC---CCCCcccccCCCCCCCCCceeeeecCCC--ceEEee
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRT---VPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHW 159 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 159 (432)
.+..|..+|.+++++||+++..+++.||+|.-|++..+... ++.. ...-+.+.. ....+ ..|... .+|..+
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-ev~k~~~~~-~k~~r--~~h~keil~~avS~ 212 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-EVLKSHGNP-LKESR--KGHVKEILTLAVSS 212 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc-hhhhhccCC-CCccc--ccccceeEEEEEcC
Confidence 45679999999999999999999999999999998887632 2221 100001111 00111 123333 456677
Q ss_pred ccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeE
Q 014003 160 LSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSL 239 (432)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~ 239 (432)
.+..+++|+.|..|+||+.++. +.++.+.+|.+.|.+++|-.....|++++.|++|++|+++....+.
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~-ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve----------- 280 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTL-EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE----------- 280 (479)
T ss_pred CCcEEEecCCCceEEEecCccc-chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH-----------
Confidence 7789999999999999999988 8889999999999999998888899999999999999998655443
Q ss_pred EECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeecccc
Q 014003 240 ICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 240 ~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
++.+|...|.++..... .+-+|+.|+++++|++.... ...+.+|.+
T Consensus 281 --------------------------tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees------qlifrg~~~ 328 (479)
T KOG0299|consen 281 --------------------------TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES------QLIFRGGEG 328 (479)
T ss_pred --------------------------HHhCCccceeeechhcccceEEeccccceeEEEeccccc------eeeeeCCCC
Confidence 34788999999977765 45556699999999996543 345678889
Q ss_pred CeEEEEE-eCCEEEEEeCCCeEEEEECCCCceEEEecC-C-----------CCCcEEEEEc--CCEEEEEeCCCcEEEEE
Q 014003 318 PVTCLAV-GGKRLYSGSMDNTIRVWDLDTLEAVMTLNG-H-----------TDAPMSLLCW--DQYLLSCSLDNTIKVWI 382 (432)
Q Consensus 318 ~v~~l~~-~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~-~-----------~~~v~~~~~~--~~~l~s~s~dg~i~iwd 382 (432)
.+.|++| +...+++|+.||.|.+|++...+++++... | ...|++++.. .+++++|+.+|.|++|-
T Consensus 329 sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 329 SIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred CeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 9999998 599999999999999999999999877632 2 1257777776 68999999999999999
Q ss_pred cCCCCc-eeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeE
Q 014003 383 MTEEGN-LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSV 425 (432)
Q Consensus 383 ~~~~~~-~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I 425 (432)
+.++-. +..+.... .....-..+|+++|+.+++..+....+
T Consensus 409 i~~g~r~i~~l~~ls--~~GfVNsl~f~~sgk~ivagiGkEhRl 450 (479)
T KOG0299|consen 409 IEDGLRAINLLYSLS--LVGFVNSLAFSNSGKRIVAGIGKEHRL 450 (479)
T ss_pred ecCCccccceeeecc--cccEEEEEEEccCCCEEEEeccccccc
Confidence 987732 22222211 222223334589999555555554444
No 74
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.2e-25 Score=209.14 Aligned_cols=262 Identities=23% Similarity=0.365 Sum_probs=220.7
Q ss_pred EeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC--CC
Q 014003 157 YHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL--GA 234 (432)
Q Consensus 157 ~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~--~~ 234 (432)
..|.....++-+....|.+|+..++ +......-++..|+++.|+++|.+|+.|..+|.|.|||..+.+.+..+.. ..
T Consensus 183 ldWss~n~laValg~~vylW~~~s~-~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~ 261 (484)
T KOG0305|consen 183 LDWSSANVLAVALGQSVYLWSASSG-SVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHAS 261 (484)
T ss_pred hhcccCCeEEEEecceEEEEecCCC-ceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCc
Confidence 4566666666666778999999887 33333344489999999999999999999999999999999888888776 56
Q ss_pred ceeeEEECCCEEEEE-cCCeEEEEEccCCceE--eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccc
Q 014003 235 EVGSLICEGPWVFVG-MPNVVKAWHIESSAEF--SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLA 309 (432)
Q Consensus 235 ~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~--~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~ 309 (432)
.+.++......+..| .++.|..+|++..+.. .+.+|..+|+.+.|+++ ++++|+.|+.+.|||.... ++.
T Consensus 262 rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-----~p~ 336 (484)
T KOG0305|consen 262 RVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-----EPK 336 (484)
T ss_pred eeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-----ccc
Confidence 788888877777665 8999999999887643 37889999999999999 9999999999999999553 467
Q ss_pred eeeeccccCeEEEEEe---CCEEEEE--eCCCeEEEEECCCCceEEEecCCCCCcEEEEEcC--CEEEEE--eCCCcEEE
Q 014003 310 ALLKGHTRPVTCLAVG---GKRLYSG--SMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD--QYLLSC--SLDNTIKV 380 (432)
Q Consensus 310 ~~~~~h~~~v~~l~~~---~~~l~sg--s~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~--s~dg~i~i 380 (432)
..+..|...|..++|+ ...||+| +.|++|++||..+++.+..+. -...|.++.|+. +-|+++ -.++.|.|
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 8888999999999997 7889986 479999999999999998886 456799999993 334443 35778999
Q ss_pred EEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 381 WIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 381 wd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
|+..+.+.+..+.+|...+-.+++ +|||. .+++|+.|.++++|++
T Consensus 416 w~~ps~~~~~~l~gH~~RVl~la~----SPdg~-~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 416 WKYPSMKLVAELLGHTSRVLYLAL----SPDGE-TIVTGAADETLRFWNL 460 (484)
T ss_pred EeccccceeeeecCCcceeEEEEE----CCCCC-EEEEecccCcEEeccc
Confidence 999999999999999988766666 99999 9999999999999986
No 75
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.3e-27 Score=196.43 Aligned_cols=234 Identities=19% Similarity=0.239 Sum_probs=191.2
Q ss_pred CCCCCCCCCCCCcee-cCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccC---cee
Q 014003 90 KKSPPSYNCPKNNVR-VSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG---NCV 165 (432)
Q Consensus 90 ~~~v~~~~~s~~g~~-las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 165 (432)
++.+..++|+++-.- +++++.||+++|||+..+. .+.+.+++|..+.....|... .++
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s------------------~Pi~~~kEH~~EV~Svdwn~~~r~~~l 121 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS------------------KPIHKFKEHKREVYSVDWNTVRRRIFL 121 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCC------------------cchhHHHhhhhheEEeccccccceeEE
Confidence 456788999655433 4455559999999844433 234456666777777777655 678
Q ss_pred eCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCC
Q 014003 166 KGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (432)
Q Consensus 166 ~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (432)
+++-|++|++|+...+ ..+.++.||...|...+|+| .+++++++|.|+++++||++....
T Consensus 122 tsSWD~TiKLW~~~r~-~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk------------------ 182 (311)
T KOG0277|consen 122 TSSWDGTIKLWDPNRP-NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK------------------ 182 (311)
T ss_pred eeccCCceEeecCCCC-cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc------------------
Confidence 8899999999999877 67889999999999999988 578999999999999999875322
Q ss_pred EEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEE
Q 014003 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (432)
Q Consensus 245 ~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 321 (432)
.+....|..++.++.|+.- .+++|+.|+.|+.||++.-. .++.++.+|.-.|..
T Consensus 183 -------------------~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----~pl~eL~gh~~AVRk 239 (311)
T KOG0277|consen 183 -------------------FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----TPLFELNGHGLAVRK 239 (311)
T ss_pred -------------------eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----ccceeecCCceEEEE
Confidence 1224567788999988753 99999999999999999875 468888999999999
Q ss_pred EEEe---CCEEEEEeCCCeEEEEECCCC-ceEEEecCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEc
Q 014003 322 LAVG---GKRLYSGSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 322 l~~~---~~~l~sgs~dg~I~vwd~~~~-~~~~~~~~~~~~v~~~~~~---~~~l~s~s~dg~i~iwd~ 383 (432)
++|+ ...|++++.|-+++|||...+ .++.+...|+.-+..+.++ +.++|+++.|+.++||+.
T Consensus 240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 240 VKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9997 678999999999999998844 4566777888888888887 789999999999999974
No 76
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=7.3e-27 Score=212.21 Aligned_cols=242 Identities=19% Similarity=0.263 Sum_probs=204.2
Q ss_pred EEEEEEecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCC-CceeEEEeCCC-ceeeEEE---CCCEEEEEcCCeEEE
Q 014003 183 TMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHT-GQSASVINLGA-EVGSLIC---EGPWVFVGMPNVVKA 256 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~-~~~~~~~---~~~~l~~~~~~~i~v 256 (432)
+.+.++.||+..|+++.|.| .+.+|++++.|+.|+||++-. +.+++++..+. ++..+.+ ...++.++.|+.+++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 56788999999999999998 899999999999999999976 88999988554 4555543 456888999999999
Q ss_pred EEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEE
Q 014003 257 WHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYS 331 (432)
Q Consensus 257 wd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s 331 (432)
||.+++++.........++++.++|+ .+++|+.|+.|+.||+++++ +++++..|-..|..+.|- +.++++
T Consensus 285 wDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-----vvqeYd~hLg~i~~i~F~~~g~rFis 359 (503)
T KOG0282|consen 285 WDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-----VVQEYDRHLGAILDITFVDEGRRFIS 359 (503)
T ss_pred eccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-----HHHHHHhhhhheeeeEEccCCceEee
Confidence 99999999988888888999999987 89999999999999999975 688899999999999994 999999
Q ss_pred EeCCCeEEEEECCCCceEEEe---cCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCc---eeEEeeccCCcceEEEe
Q 014003 332 GSMDNTIRVWDLDTLEAVMTL---NGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGN---LEVAYTHNEDHGVLALG 405 (432)
Q Consensus 332 gs~dg~I~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~ 405 (432)
.+.|++++||+.+...++... ..|+.+...+...++++++-+.|+.|.++.+...-. ...+.+|.. ...++.
T Consensus 360 sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v--aGys~~ 437 (503)
T KOG0282|consen 360 SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV--AGYSCQ 437 (503)
T ss_pred eccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec--cCceee
Confidence 999999999999988776544 446666666777799999999999999998765432 233444443 445566
Q ss_pred eeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 406 GLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 406 ~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+.|||||. +|++|+.||.+.+||.+|
T Consensus 438 v~fSpDG~-~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 438 VDFSPDGR-TLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred EEEcCCCC-eEEeecCCccEEEeechh
Confidence 67899999 999999999999999875
No 77
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-25 Score=193.05 Aligned_cols=238 Identities=19% Similarity=0.232 Sum_probs=195.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEe--e
Q 014003 82 QTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYH--W 159 (432)
Q Consensus 82 ~~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 159 (432)
|...+++|.++++++|+ +|.|+||||.|-+|+|+|....... +. +-.|.+...|+. .
T Consensus 35 ~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~ql----g~---------------ll~HagsitaL~F~~ 93 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQL----GI---------------LLSHAGSITALKFYP 93 (362)
T ss_pred ccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhh----cc---------------eeccccceEEEEecC
Confidence 55577899999999997 6889999999999999987765431 11 111122233332 2
Q ss_pred ccC--ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCcee
Q 014003 160 LSG--NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG 237 (432)
Q Consensus 160 ~~~--~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~ 237 (432)
..+ .+++|+.||.|.+|++..- ..+.++++|++.|+.++.+|.+++-++.+.|+.++.||+-.|+.....+......
T Consensus 94 ~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at 172 (362)
T KOG0294|consen 94 PLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKAT 172 (362)
T ss_pred CcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcce
Confidence 222 7999999999999999776 8899999999999999999999999999999999999999998877777665544
Q ss_pred e--EEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeec
Q 014003 238 S--LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG 314 (432)
Q Consensus 238 ~--~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~ 314 (432)
. ..+.|..++.+..+.|-+|.+++...+........+.++.|... .+++|..|+.|.+||..... +...+.+
T Consensus 173 ~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~-----~~~~~~A 247 (362)
T KOG0294|consen 173 LVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDT-----PLTEFLA 247 (362)
T ss_pred eeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCc-----cceeeec
Confidence 4 44688899999999999999998887766555577778877766 99999999999999988743 5788999
Q ss_pred cccCeEEEEEe----CCEEEEEeCCCeEEEEECCCC
Q 014003 315 HTRPVTCLAVG----GKRLYSGSMDNTIRVWDLDTL 346 (432)
Q Consensus 315 h~~~v~~l~~~----~~~l~sgs~dg~I~vwd~~~~ 346 (432)
|...|-.+.+- +.+|+++++||.|+|||++..
T Consensus 248 H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 248 HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred chhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99999999853 579999999999999999876
No 78
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.3e-26 Score=203.28 Aligned_cols=262 Identities=16% Similarity=0.192 Sum_probs=205.9
Q ss_pred CcCceeeeeeecCccCCCCCccccccCCCCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCccccc
Q 014003 55 PTKKVLCVYFLEGRCNRNPCRFAHTESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDC 134 (432)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~ 134 (432)
.+++.+.-+|..-.-.+ -+. ..++.||..+|.-+.||||.+||.+.+.|..+++||+.++.........+
T Consensus 242 aSkD~Taiiw~v~~d~~--~kl------~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~-- 311 (519)
T KOG0293|consen 242 ASKDSTAIIWIVVYDVH--FKL------KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGL-- 311 (519)
T ss_pred ccCCceEEEEEEecCcc--eee------eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCc--
Confidence 34667788888754443 222 23789999999999999999999999999999999988876432211111
Q ss_pred CCCCCCCCCceeeeecCCCceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecc-cCcEEEEEecCCCCEEEEEeCC
Q 014003 135 STGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGH-KKAVSGIALPLRSDKLYSGSRD 213 (432)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H-~~~V~~l~~~~~~~~l~s~s~D 213 (432)
+-.....|..|.+..+++|+.|+.+..|+++... ....++- ...|.+++.++||+++++...|
T Consensus 312 --------------~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 312 --------------GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred --------------CCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEcCCCcEEEEEecc
Confidence 1112345566667799999999999999997642 3334443 3679999999999999999999
Q ss_pred CcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCC
Q 014003 214 GTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDG 291 (432)
Q Consensus 214 g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg 291 (432)
..|++++.++...... .....+|+++.++.+ ++++--.+.
T Consensus 376 ~~i~l~~~e~~~dr~l--------------------------------------ise~~~its~~iS~d~k~~LvnL~~q 417 (519)
T KOG0293|consen 376 KKIRLYNREARVDRGL--------------------------------------ISEEQPITSFSISKDGKLALVNLQDQ 417 (519)
T ss_pred cceeeechhhhhhhcc--------------------------------------ccccCceeEEEEcCCCcEEEEEcccC
Confidence 9999999887654432 234567888888888 788888999
Q ss_pred cEEEEECCCCCCCccccceeeeccccCeEE--EEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc-
Q 014003 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTC--LAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW- 365 (432)
Q Consensus 292 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~--l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~- 365 (432)
.+++||+... ++++.+.||...-.- -+|. ..++++||+|+.|+||+..+++++.++.||...|.+++++
T Consensus 418 ei~LWDl~e~-----~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 418 EIHLWDLEEN-----KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP 492 (519)
T ss_pred eeEEeecchh-----hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC
Confidence 9999999954 467888888765332 2443 5799999999999999999999999999999999999999
Q ss_pred --CCEEEEEeCCCcEEEEEcCC
Q 014003 366 --DQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 366 --~~~l~s~s~dg~i~iwd~~~ 385 (432)
..++|++|.||+|+||....
T Consensus 493 ~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 493 ADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCHHHhhccCCCCeEEEecCCc
Confidence 47899999999999997754
No 79
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.7e-25 Score=214.99 Aligned_cols=240 Identities=15% Similarity=0.245 Sum_probs=187.0
Q ss_pred EEEEEEe-cccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee--------------------------E------E
Q 014003 183 TMLAKLE-GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSA--------------------------S------V 229 (432)
Q Consensus 183 ~~~~~l~-~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~--------------------------~------~ 229 (432)
...+.++ +|+++|.++.|++||+|||+||.|+.|+||.+...+.. . .
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 4455666 89999999999999999999999999999987651000 0 0
Q ss_pred -------------Ee----------------CCCceeeEEE--CCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEE
Q 014003 230 -------------IN----------------LGAEVGSLIC--EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMV 278 (432)
Q Consensus 230 -------------~~----------------~~~~~~~~~~--~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~ 278 (432)
++ +...+..+.. ++-+|.++.|.+|++|++.....+....|..-|+|++
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVa 416 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVA 416 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEE
Confidence 00 0011111111 3445667799999999999999999999999999999
Q ss_pred EcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEec
Q 014003 279 VANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN 353 (432)
Q Consensus 279 ~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~ 353 (432)
|+|. ++++|+-||+|+||++...+ +..+..-..-|++++|. |++.++|+.+|.+++|++...+....+.
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~------Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKK------VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCe------eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 9986 99999999999999998864 33333445789999886 9999999999999999999888766553
Q ss_pred CC--------CCCcEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCC
Q 014003 354 GH--------TDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND 422 (432)
Q Consensus 354 ~~--------~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~D 422 (432)
-+ ...|+.+.+. .+.+++.+.|..|+|+|.++...+..+.+....... ....|+.||+ +|+++++|
T Consensus 491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ--~~Asfs~Dgk-~IVs~seD 567 (712)
T KOG0283|consen 491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQ--ISASFSSDGK-HIVSASED 567 (712)
T ss_pred EeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcc--eeeeEccCCC-EEEEeecC
Confidence 21 2269999888 356888999999999999988888888775544332 3334578999 89999999
Q ss_pred CeEEEeeCC
Q 014003 423 DSVHLYELP 431 (432)
Q Consensus 423 g~I~iwdl~ 431 (432)
..|+||+++
T Consensus 568 s~VYiW~~~ 576 (712)
T KOG0283|consen 568 SWVYIWKND 576 (712)
T ss_pred ceEEEEeCC
Confidence 999999974
No 80
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=4.5e-25 Score=215.20 Aligned_cols=227 Identities=15% Similarity=0.157 Sum_probs=168.9
Q ss_pred CCCCCCCCCCCCCCCCC-CceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccC
Q 014003 84 LPVSNHKKSPPSYNCPK-NNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG 162 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~-~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (432)
+.+.||++.|.+++|+| ++.+||||+.||+|+||++...+...
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~------------------------------------ 112 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ------------------------------------ 112 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc------------------------------------
Confidence 45789999999999999 89999999999999999865432100
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCC-CEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~ 241 (432)
....++..+.+|...|.+++|+|++ ++|++++.|++|++||+++++....+
T Consensus 113 -----------------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l----------- 164 (493)
T PTZ00421 113 -----------------NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI----------- 164 (493)
T ss_pred -----------------ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE-----------
Confidence 0003466788999999999999975 79999999999999999988755433
Q ss_pred CCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCe
Q 014003 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (432)
Q Consensus 242 ~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v 319 (432)
..|...|.+++|+++ ++++++.|+.|++||+++++ .+..+.+|....
T Consensus 165 --------------------------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~-----~v~tl~~H~~~~ 213 (493)
T PTZ00421 165 --------------------------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT-----IVSSVEAHASAK 213 (493)
T ss_pred --------------------------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc-----EEEEEecCCCCc
Confidence 467788999999987 89999999999999999864 366677887653
Q ss_pred -EEEEEe--CCEEEEEe----CCCeEEEEECCCCc-eEEEecCCCCC-cEEEEEc--CCEEEEEe-CCCcEEEEEcCCCC
Q 014003 320 -TCLAVG--GKRLYSGS----MDNTIRVWDLDTLE-AVMTLNGHTDA-PMSLLCW--DQYLLSCS-LDNTIKVWIMTEEG 387 (432)
Q Consensus 320 -~~l~~~--~~~l~sgs----~dg~I~vwd~~~~~-~~~~~~~~~~~-v~~~~~~--~~~l~s~s-~dg~i~iwd~~~~~ 387 (432)
..+.|. +..+++++ .|+.|++||+++.. ++.....+... +....++ +++|++++ .|+.|++||+.+++
T Consensus 214 ~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 214 SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 344554 45665543 47999999998754 44444434333 3333444 67888877 59999999999887
Q ss_pred ceeEEee-ccCCcceEEEe
Q 014003 388 NLEVAYT-HNEDHGVLALG 405 (432)
Q Consensus 388 ~~~~~~~-~~~~~~~~~~~ 405 (432)
....... ....+..+++.
T Consensus 294 ~~~~~~~~s~~~~~g~~~~ 312 (493)
T PTZ00421 294 LTFCSSYSSVEPHKGLCMM 312 (493)
T ss_pred eEEEeeccCCCCCcceEec
Confidence 6554332 33445555553
No 81
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=9.2e-25 Score=206.70 Aligned_cols=325 Identities=17% Similarity=0.225 Sum_probs=235.9
Q ss_pred CCCceecCCCCCCCcccccccCCCCCC--CCCCccc--ccCCCCCCC-CCceeeeecCCCceEEeecc--CceeeCCCCC
Q 014003 99 PKNNVRVSSGSEEGTTHVQNRENPDRT--VPNKSSL--DCSTGSDDS-GSKRTLERTTPKNVCYHWLS--GNCVKGDECR 171 (432)
Q Consensus 99 s~~g~~las~~~Dg~i~iW~~~~~~~~--~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~ 171 (432)
+-..++++.|..+|+|||++-++-... +|-...+ +......+. ......+..-++.+++.+.. ..+..-..|.
T Consensus 267 cVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndh 346 (1080)
T KOG1408|consen 267 CVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDH 346 (1080)
T ss_pred eeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCc
Confidence 446789999999999999976553321 1111111 101111100 01111122334566655553 3666667789
Q ss_pred eEEEEeCCCCcE--EEEEEecccCcEEEEEecCC-----------CCEEEEEeCCCcEEEEeCCCCceeEEEe-------
Q 014003 172 FWHSWFCGEGFT--MLAKLEGHKKAVSGIALPLR-----------SDKLYSGSRDGTVQLWDCHTGQSASVIN------- 231 (432)
Q Consensus 172 ~i~vw~~~~~~~--~~~~l~~H~~~V~~l~~~~~-----------~~~l~s~s~Dg~v~iWd~~~~~~~~~~~------- 231 (432)
.+.|||+.+-.+ ....+-.|...|+++.--|. ...++|++.|++||+||++.+..-.++.
T Consensus 347 SlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~ 426 (1080)
T KOG1408|consen 347 SLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSAN 426 (1080)
T ss_pred eEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhh
Confidence 999999975433 23345579999999876441 2359999999999999997632111110
Q ss_pred ------C---------------------------CCceeeEEECCCEEEEE-cCCeEEEEEccCCce-EeecCCcCCEEE
Q 014003 232 ------L---------------------------GAEVGSLICEGPWVFVG-MPNVVKAWHIESSAE-FSLDGPVGEVYS 276 (432)
Q Consensus 232 ------~---------------------------~~~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~-~~~~~~~~~v~~ 276 (432)
. +-...++.++++.+++| .-|.++++++..-+. ..++.|..+|.|
T Consensus 427 l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilc 506 (1080)
T KOG1408|consen 427 LSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILC 506 (1080)
T ss_pred hhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEE
Confidence 0 00112344688888887 568999999988764 467899999999
Q ss_pred EEEcCC-----EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEE---------------------------
Q 014003 277 MVVANE-----MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV--------------------------- 324 (432)
Q Consensus 277 l~~~~~-----~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~--------------------------- 324 (432)
+.++.. +|++++.|.-|++||+..+ +.++.++.+|...|+++.|
T Consensus 507 LeyS~p~~~~kLLASasrdRlIHV~Dv~rn----y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~ 582 (1080)
T KOG1408|consen 507 LEYSFPVLTNKLLASASRDRLIHVYDVKRN----YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS 582 (1080)
T ss_pred EeecCchhhhHhhhhccCCceEEEEecccc----cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc
Confidence 999854 8999999999999998776 4467777777777777666
Q ss_pred ----------------------e--CCEEEEEeCCCeEEEEECCCCceEEEecC---CCCCcEEEEEc--CCEEEEEeCC
Q 014003 325 ----------------------G--GKRLYSGSMDNTIRVWDLDTLEAVMTLNG---HTDAPMSLLCW--DQYLLSCSLD 375 (432)
Q Consensus 325 ----------------------~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~---~~~~v~~~~~~--~~~l~s~s~d 375 (432)
+ .+++++++.|..|+|||+++++..+.|++ |.+....+..+ +.||++.+.|
T Consensus 583 ~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd 662 (1080)
T KOG1408|consen 583 SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD 662 (1080)
T ss_pred CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC
Confidence 1 24688999999999999999999999976 44555555554 8999999999
Q ss_pred CcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 376 NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 376 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.++.++|.-+++++...++|.+.++.+.| .+|-+ .|++.+.||.|.||.++.
T Consensus 663 ktl~~~Df~sgEcvA~m~GHsE~VTG~kF----~nDCk-HlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 663 KTLCFVDFVSGECVAQMTGHSEAVTGVKF----LNDCK-HLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CceEEEEeccchhhhhhcCcchheeeeee----cccch-hheeecCCceEEEEECch
Confidence 99999999999999999999999988888 78888 899999999999999873
No 82
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.9e-26 Score=212.91 Aligned_cols=230 Identities=25% Similarity=0.357 Sum_probs=193.2
Q ss_pred cCceeeCCCCCeEEEEeCCCCc-----EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc--eeEEEeCC
Q 014003 161 SGNCVKGDECRFWHSWFCGEGF-----TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ--SASVINLG 233 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~-----~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~--~~~~~~~~ 233 (432)
...+.+|+.||.|++|++.... ..+..++.|.+.|..++...+++.|+|+|.|-+|++|+...+. +..+
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~st---- 112 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMST---- 112 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhh----
Confidence 3469999999999999995432 2477889999999999999999999999999999999988663 2222
Q ss_pred CceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEE-cCC--EEEEEECCCcEEEEECCCCCC-----Cc
Q 014003 234 AEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVV-ANE--MLFAGAQDGNILVWKGIPNTQ-----NP 305 (432)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~-~~~--~l~~g~~dg~i~~wd~~~~~~-----~~ 305 (432)
+..|..-|.|+++ .++ ++++|+-|+.|.+||++++.. ..
T Consensus 113 ---------------------------------ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n 159 (735)
T KOG0308|consen 113 ---------------------------------IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN 159 (735)
T ss_pred ---------------------------------hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc
Confidence 3568888999988 444 899999999999999997732 00
Q ss_pred cccceeee-ccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEE
Q 014003 306 FQLAALLK-GHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKV 380 (432)
Q Consensus 306 ~~~~~~~~-~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~i 380 (432)
......+. ++..+|++++.+ +..+++|+..+.|++||.++.+.+..+.||...|..+..+ |..++++|+||+|++
T Consensus 160 ~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrl 239 (735)
T KOG0308|consen 160 NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRL 239 (735)
T ss_pred ccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEe
Confidence 11222333 888999999998 6699999999999999999999999999999999999888 799999999999999
Q ss_pred EEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 381 WIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 381 wd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
||+...+++..+..|.+.+.++.. +|+=. .+.+|+.||.|..=|+.+
T Consensus 240 WdLgqQrCl~T~~vH~e~VWaL~~----~~sf~-~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 240 WDLGQQRCLATYIVHKEGVWALQS----SPSFT-HVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred eeccccceeeeEEeccCceEEEee----CCCcc-eEEecCCCCcEEecccCC
Confidence 999999999999999988766665 56656 899999999998877653
No 83
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.8e-24 Score=214.43 Aligned_cols=294 Identities=19% Similarity=0.212 Sum_probs=223.1
Q ss_pred CCCCCCCC-CCCCCCCCCCceecCCCC--CCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEee-
Q 014003 84 LPVSNHKK-SPPSYNCPKNNVRVSSGS--EEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHW- 159 (432)
Q Consensus 84 ~~~~gh~~-~v~~~~~s~~g~~las~~--~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (432)
++.-+|.+ .|.+++.+|||..+|||+ .||.++||+.+.-......... . .....-.+..|.....|+.|
T Consensus 6 p~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~------~-l~k~l~~m~~h~~sv~CVR~S 78 (942)
T KOG0973|consen 6 PTWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNE------N-LPKHLCTMDDHDGSVNCVRFS 78 (942)
T ss_pred ccccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhc------c-cchhheeeccccCceeEEEEC
Confidence 45555654 578999999999999999 9999999975542211000000 0 11122233445555667655
Q ss_pred -ccCceeeCCCCCeEEEEeCCC-----------------CcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 014003 160 -LSGNCVKGDECRFWHSWFCGE-----------------GFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDC 221 (432)
Q Consensus 160 -~~~~~~~g~~d~~i~vw~~~~-----------------~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~ 221 (432)
++..+++|++|+.|.||+... .++.+..|.+|...|..++|+|++.+|+++|.|++|.|||.
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~ 158 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNA 158 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcc
Confidence 555999999999999999862 23578889999999999999999999999999999999999
Q ss_pred CCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECC
Q 014003 222 HTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGI 299 (432)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~ 299 (432)
.+.+.+.++ .+|.+.|..+.|+|- ++++-+.|++|++|++.
T Consensus 159 ~tF~~~~vl-------------------------------------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 159 KTFELLKVL-------------------------------------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS 201 (942)
T ss_pred ccceeeeee-------------------------------------ecccccccceEECCccCeeeeecCCceEEEEEcc
Confidence 988766654 688999999999997 99999999999999966
Q ss_pred CCCCCccccceeeecc------ccCeEEEEEe--CCEEEEEeC----CCeEEEEECCCCceEEEecCCCCCcEEEEEcC-
Q 014003 300 PNTQNPFQLAALLKGH------TRPVTCLAVG--GKRLYSGSM----DNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD- 366 (432)
Q Consensus 300 ~~~~~~~~~~~~~~~h------~~~v~~l~~~--~~~l~sgs~----dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~- 366 (432)
+- .+.+.+..+ ..-+..+.|+ |.+|++.-. -.++.|.+..+.+.-..|-||.+++.++.|++
T Consensus 202 dw-----~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 202 DW-----GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred cc-----eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChH
Confidence 52 223333322 2235567776 999988643 34799999999999999999999999999972
Q ss_pred ------C------------EEEEEeCCCcEEEEEcCCCCceeEEee-ccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEE
Q 014003 367 ------Q------------YLLSCSLDNTIKVWIMTEEGNLEVAYT-HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHL 427 (432)
Q Consensus 367 ------~------------~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~i 427 (432)
+ .+|+||.|++|.||.....+++..... .+..+..+ .|+|||. .|+++|.||+|.+
T Consensus 277 lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~Dm----sWspdG~-~LfacS~DGtV~~ 351 (942)
T KOG0973|consen 277 LFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDM----SWSPDGF-SLFACSLDGTVAL 351 (942)
T ss_pred HhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeee----eEcCCCC-eEEEEecCCeEEE
Confidence 2 688999999999999987777655543 23334344 4599999 7777889999999
Q ss_pred eeCC
Q 014003 428 YELP 431 (432)
Q Consensus 428 wdl~ 431 (432)
.+++
T Consensus 352 i~Fe 355 (942)
T KOG0973|consen 352 IHFE 355 (942)
T ss_pred EEcc
Confidence 8764
No 84
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.4e-23 Score=172.15 Aligned_cols=288 Identities=18% Similarity=0.222 Sum_probs=208.2
Q ss_pred CCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCC
Q 014003 89 HKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGD 168 (432)
Q Consensus 89 h~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 168 (432)
-++.|.+++|.|.|...|.||...+.||-.... ...+-..+ . ..+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~--l~~~r~~h-------e-------a~~------------------- 75 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPA--LIDLRHAH-------E-------AAK------------------- 75 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEcccc--ccCccccc-------c-------ccc-------------------
Confidence 456789999999999999999999888862111 00000000 0 000
Q ss_pred CCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee------EEEeCCCceeeEEE-
Q 014003 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSA------SVINLGAEVGSLIC- 241 (432)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~------~~~~~~~~~~~~~~- 241 (432)
.......+.-+.|.+.|.|.+|+|+|+++++|+.|++|++.-.+...+. ..-.+...+..+.+
T Consensus 76 ----------~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fl 145 (350)
T KOG0641|consen 76 ----------QPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFL 145 (350)
T ss_pred ----------CCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEe
Confidence 0000122334679999999999999999999999999999766543322 22223445554442
Q ss_pred -----CCCEEEEE--cCCeEEEEEccCCceE-eecCCcCCEEEE-EEcCCEEEEEECCCcEEEEECCCCCCCccccceee
Q 014003 242 -----EGPWVFVG--MPNVVKAWHIESSAEF-SLDGPVGEVYSM-VVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (432)
Q Consensus 242 -----~~~~l~~~--~~~~i~vwd~~~~~~~-~~~~~~~~v~~l-~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~ 312 (432)
.+.+++.+ .|..|++-|-..++.+ .+.+|.+.|.++ .|++-++++|++|.+|++||++-+.. +..+
T Consensus 146 d~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~-----v~~l 220 (350)
T KOG0641|consen 146 DDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSC-----VNTL 220 (350)
T ss_pred cCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccce-----eeec
Confidence 44566655 4556777777777754 678999999988 55555999999999999999987643 2222
Q ss_pred e----c---cccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEE
Q 014003 313 K----G---HTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVW 381 (432)
Q Consensus 313 ~----~---h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iw 381 (432)
. + ....|.+++.+ |+.|++|-.|....+||++.++.++.+..|...|.++.|+ -.|+++++.|..|++-
T Consensus 221 ~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~iklt 300 (350)
T KOG0641|consen 221 DNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLT 300 (350)
T ss_pred cCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEe
Confidence 1 1 13567778776 9999999999999999999999999999999999999999 3799999999999999
Q ss_pred EcCCCC----ceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 382 IMTEEG----NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 382 d~~~~~----~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
|+...- ++.....|... ++.+.|+|..- -+++.+.|.++.+|-++
T Consensus 301 dlqgdla~el~~~vv~ehkdk----~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 301 DLQGDLAHELPIMVVAEHKDK----AIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred ecccchhhcCceEEEEeccCc----eEEEEecCccc-eeeeccCcceEEEeccC
Confidence 987431 23333345544 34455688876 78888999999999875
No 85
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=8.7e-25 Score=200.01 Aligned_cols=294 Identities=17% Similarity=0.228 Sum_probs=207.2
Q ss_pred CCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccC
Q 014003 83 TLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG 162 (432)
Q Consensus 83 ~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (432)
...+.+|+..|.++++.|.|.+++|||.|-+++.||..+-....+....+.-. ..|..+...+.+.+.
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~------------E~h~i~sl~ys~Tg~ 227 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPC------------ETHQINSLQYSVTGD 227 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcc------------cccccceeeecCCCC
Confidence 34779999999999999999999999999999999987744322211111100 112223444555555
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEE------------EEecccCcEEEEEecCCC-CEEEEEeCCCcEEEEeCCCCc-eeE
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLA------------KLEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQ-SAS 228 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~------------~l~~H~~~V~~l~~~~~~-~~l~s~s~Dg~v~iWd~~~~~-~~~ 228 (432)
.++..+.....+++|-+.. +... .-+||...+++.+|+|.. +.++|++.||++||||++..+ ...
T Consensus 228 ~iLvvsg~aqakl~DRdG~-~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 228 QILVVSGSAQAKLLDRDGF-EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred eEEEEecCcceeEEccCCc-eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 5544444566777776432 2221 235899999999999965 679999999999999997654 223
Q ss_pred EEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCcc
Q 014003 229 VINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPF 306 (432)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~ 306 (432)
++... ...+..-.++.++|+++ +||+|+.||+|.+|+.......
T Consensus 307 Vik~k--------------------------------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-- 352 (641)
T KOG0772|consen 307 VIKTK--------------------------------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-- 352 (641)
T ss_pred EEeec--------------------------------cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc--
Confidence 33211 11345567889999998 9999999999999998654432
Q ss_pred ccceeeecccc--CeEEEEEe--CCEEEEEeCCCeEEEEECCCCc-eEEEecCCC--CCcEEEEEc--CCEEEEEeC---
Q 014003 307 QLAALLKGHTR--PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLE-AVMTLNGHT--DAPMSLLCW--DQYLLSCSL--- 374 (432)
Q Consensus 307 ~~~~~~~~h~~--~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~-~~~~~~~~~--~~v~~~~~~--~~~l~s~s~--- 374 (432)
.....-++|.. .|+|++|+ |++|++-+.|+++++||++..+ ++....+-. .+-+.+.|+ .++|++|..
T Consensus 353 p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~ 432 (641)
T KOG0772|consen 353 PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPN 432 (641)
T ss_pred cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccC
Confidence 22334457776 99999997 9999999999999999999754 455554432 234555566 678888864
Q ss_pred ---CCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEe
Q 014003 375 ---DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLY 428 (432)
Q Consensus 375 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iw 428 (432)
.|++.+||..+-..+..+.-... ....+.|+|.=+ -|+.|+.||.++||
T Consensus 433 ~~~~g~L~f~d~~t~d~v~ki~i~~a----Svv~~~WhpkLN-Qi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 433 GMTAGTLFFFDRMTLDTVYKIDISTA----SVVRCLWHPKLN-QIFAGSGDGTAHVY 484 (641)
T ss_pred CCCCceEEEEeccceeeEEEecCCCc----eEEEEeecchhh-heeeecCCCceEEE
Confidence 57899999988887777665533 334556689876 56677889999986
No 86
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1.3e-24 Score=196.39 Aligned_cols=235 Identities=21% Similarity=0.327 Sum_probs=180.5
Q ss_pred ceeeCCCCCeEEEEeCCCC---------cEEEEEEecccCcEEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeEEEeC
Q 014003 163 NCVKGDECRFWHSWFCGEG---------FTMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~---------~~~~~~l~~H~~~V~~l~~~~~-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 232 (432)
.++++...+.|.|||..+. ..+-..|.||++.=.+|+|++. .-+|++++.|++|.+||+........
T Consensus 139 iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~--- 215 (422)
T KOG0264|consen 139 IVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDK--- 215 (422)
T ss_pred EEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCc---
Confidence 3444555555666665321 1334478999998889999874 45799999999999999975432100
Q ss_pred CCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccc
Q 014003 233 GAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLA 309 (432)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~ 309 (432)
.......+.+|...|..++|++. ++++++.|+.+.|||+++++ .++.
T Consensus 216 ---------------------------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~---~~~~ 265 (422)
T KOG0264|consen 216 ---------------------------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT---SKPS 265 (422)
T ss_pred ---------------------------cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC---CCCc
Confidence 00112345789999999999876 89999999999999999742 3567
Q ss_pred eeeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCC-ceEEEecCCCCCcEEEEEc---CCEEEEEeCCCcEEEEE
Q 014003 310 ALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWI 382 (432)
Q Consensus 310 ~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~-~~~~~~~~~~~~v~~~~~~---~~~l~s~s~dg~i~iwd 382 (432)
...++|..+|.|++|+ +..||+||.|++|.+||+|+. +++.++.+|...|.++.|+ ...|++++.|+.+.|||
T Consensus 266 ~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 7788999999999997 888999999999999999985 4689999999999999999 47999999999999999
Q ss_pred cCCCC-----------ceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 383 MTEEG-----------NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 383 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+..-. +...++.|.+.... ...+.|+|.....+++.++|+.+.||++.
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~k-V~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAK-VSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccc-cccccCCCCCCeEEEEecCCceEEEeecc
Confidence 97432 23334444433222 23344589999899999999999999875
No 87
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=3.3e-25 Score=197.78 Aligned_cols=267 Identities=17% Similarity=0.222 Sum_probs=214.8
Q ss_pred ceEEeeccCceeeCCCCCeEEEEeCCCC-cEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC
Q 014003 154 NVCYHWLSGNCVKGDECRFWHSWFCGEG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~-~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 232 (432)
.+-+.+..+.+++|+.|..|++|++..+ ...+.+|.|-.++|+++.|.++++++++++.|+.+++|++.+.+...++..
T Consensus 180 ~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG 259 (459)
T KOG0288|consen 180 DVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG 259 (459)
T ss_pred eeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcc
Confidence 4445556679999999999999999544 357788889999999999999999999999999999999999998888875
Q ss_pred CC-ceeeEEE---CCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCcccc
Q 014003 233 GA-EVGSLIC---EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQL 308 (432)
Q Consensus 233 ~~-~~~~~~~---~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~ 308 (432)
+. .+.++.. ....+.++.|..++.||+.........-....+..+...+..+++|..|++|++||.+... +
T Consensus 260 HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~-----~ 334 (459)
T KOG0288|consen 260 HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSAD-----K 334 (459)
T ss_pred cccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCc-----e
Confidence 44 4444432 3345666789999999999988776666777778888877799999999999999999875 3
Q ss_pred ceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCC----CCcEEEEEc--CCEEEEEeCCCcEEE
Q 014003 309 AALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT----DAPMSLLCW--DQYLLSCSLDNTIKV 380 (432)
Q Consensus 309 ~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~----~~v~~~~~~--~~~l~s~s~dg~i~i 380 (432)
....+.+. .|+++..+ +..+.+++.|.++.+.|+++.+..+.+.... ...+.+.|+ +.|+++||.||.|+|
T Consensus 335 ~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~i 413 (459)
T KOG0288|consen 335 TRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYI 413 (459)
T ss_pred eeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEE
Confidence 56666654 88988775 8889999999999999999998888875422 125556666 799999999999999
Q ss_pred EEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 381 WIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 381 wd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
|++.+++....+....... ..+++.|+|.|. .|++++.++.+.+|.
T Consensus 414 W~v~tgKlE~~l~~s~s~~--aI~s~~W~~sG~-~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 414 WSVFTGKLEKVLSLSTSNA--AITSLSWNPSGS-GLLSADKQKAVTLWT 459 (459)
T ss_pred EEccCceEEEEeccCCCCc--ceEEEEEcCCCc-hhhcccCCcceEecC
Confidence 9999998877776544431 123344589999 788888999999994
No 88
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=2.3e-25 Score=193.02 Aligned_cols=242 Identities=18% Similarity=0.277 Sum_probs=199.8
Q ss_pred eeeeecCCCceEEeeccCceeeCCCCCeEEEEeCCCCcEEEE--------EEecccCcEEEEEecCCCCEEEEEeCCCcE
Q 014003 145 RTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLA--------KLEGHKKAVSGIALPLRSDKLYSGSRDGTV 216 (432)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~--------~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v 216 (432)
+...+...++.-|.|.+..+++|+.||.|.||+..++ +..+ .+--|..+|.|+.|+.|..+|++|+.||.|
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~G-KlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI 287 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTG-KLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI 287 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccc-hhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence 3344555667788999999999999999999999776 3333 234578999999999999999999999999
Q ss_pred EEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEE
Q 014003 217 QLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNIL 294 (432)
Q Consensus 217 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~ 294 (432)
++|.+++|+|++.+. ..|...|+++.|+.+ .+++++.|.+++
T Consensus 288 KvWri~tG~ClRrFd------------------------------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvR 331 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFD------------------------------------RAHTKGVTCLSFSRDNSQILSASFDQTVR 331 (508)
T ss_pred EEEEEecchHHHHhh------------------------------------hhhccCeeEEEEccCcchhhcccccceEE
Confidence 999999999998774 478888999999988 899999999999
Q ss_pred EEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCC--CCCcEEEEEc---CC
Q 014003 295 VWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGH--TDAPMSLLCW---DQ 367 (432)
Q Consensus 295 ~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~--~~~v~~~~~~---~~ 367 (432)
+.-+..++ .+..+.+|.+.|+...|. |.++++++.||+|+||+.++.+|+.+++.. ..+|.++... ..
T Consensus 332 iHGlKSGK-----~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe 406 (508)
T KOG0275|consen 332 IHGLKSGK-----CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE 406 (508)
T ss_pred Eeccccch-----hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc
Confidence 99998875 588899999999999985 999999999999999999999999998743 3457776665 57
Q ss_pred EEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 368 YLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 368 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.++.+...++|.|-++. ++.++.+...+.+... .++++.||.|. ++.+.++|+.++.|.+.
T Consensus 407 h~iVCNrsntv~imn~q-GQvVrsfsSGkREgGd-Fi~~~lSpkGe-wiYcigED~vlYCF~~~ 467 (508)
T KOG0275|consen 407 HFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGD-FINAILSPKGE-WIYCIGEDGVLYCFSVL 467 (508)
T ss_pred eEEEEcCCCeEEEEecc-ceEEeeeccCCccCCc-eEEEEecCCCc-EEEEEccCcEEEEEEee
Confidence 89999999999999884 4455555443333222 23444589999 89999999999988764
No 89
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=9.6e-24 Score=189.52 Aligned_cols=268 Identities=18% Similarity=0.253 Sum_probs=213.9
Q ss_pred CceEEeecc--CceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEE
Q 014003 153 KNVCYHWLS--GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI 230 (432)
Q Consensus 153 ~~~~~~~~~--~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~ 230 (432)
....+.... +.+.+|+.|..+-++|...+ +.+..|+||...|+++.|+++...+++++.|..|+||......+....
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 344455555 58999999999999999887 889999999999999999999999999999999999998766544443
Q ss_pred -eCCCceeeEE--ECCCEE-EEEcCCeEEEEEccCCceEeecCC---cCCEEEEEEcCC--EEEEEECCCcEEEEECCCC
Q 014003 231 -NLGAEVGSLI--CEGPWV-FVGMPNVVKAWHIESSAEFSLDGP---VGEVYSMVVANE--MLFAGAQDGNILVWKGIPN 301 (432)
Q Consensus 231 -~~~~~~~~~~--~~~~~l-~~~~~~~i~vwd~~~~~~~~~~~~---~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~ 301 (432)
.+.+++..+. +.+.++ .++.|+...+.|++++..+....+ .-.+++.+|+|| ++.+|..||.|++||+..+
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 3556666555 456555 566899999999999987654433 356899999999 8888999999999999987
Q ss_pred CCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCC-CCcEEEEEc--CCEEEEEeCCC
Q 014003 302 TQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT-DAPMSLLCW--DQYLLSCSLDN 376 (432)
Q Consensus 302 ~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~-~~v~~~~~~--~~~l~s~s~dg 376 (432)
.. +..+.+|.++|..++|+ |-+|++++.|+.|++||+|..+...++.-.. ..+.++.++ |.+|+.++.|=
T Consensus 380 ~~-----~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 380 TN-----VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred cc-----cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeeccee
Confidence 63 77899999999999997 8899999999999999999988888776433 257777777 89999998887
Q ss_pred cEEEEEcCCC--CceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 377 TIKVWIMTEE--GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 377 ~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+|++++-.+. .++..+..|.+....+.| ....+ ++++++.|..++++.++
T Consensus 455 ~Vy~~~k~~k~W~~~~~~~~~sg~st~v~F----g~~aq-~l~s~smd~~l~~~a~~ 506 (506)
T KOG0289|consen 455 QVYICKKKTKSWTEIKELADHSGLSTGVRF----GEHAQ-YLASTSMDAILRLYALT 506 (506)
T ss_pred EEEEEecccccceeeehhhhcccccceeee----cccce-EEeeccchhheEEeecC
Confidence 7777764333 344444455545555555 45555 99999999999998763
No 90
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9.6e-25 Score=205.92 Aligned_cols=255 Identities=18% Similarity=0.284 Sum_probs=207.1
Q ss_pred CCccccccCCCCCC---CCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeee
Q 014003 73 PCRFAHTESQTLPV---SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLER 149 (432)
Q Consensus 73 p~~~l~~~~~~~~~---~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (432)
+|.||......... +-++..|++++|+++|.+||.|-.+|++.|||+........... .
T Consensus 197 ~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~------------------~ 258 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG------------------S 258 (484)
T ss_pred ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC------------------C
Confidence 56666655554411 22378999999999999999999999999999776554211111 0
Q ss_pred cCCCceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 014003 150 TTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV 229 (432)
Q Consensus 150 ~~~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~ 229 (432)
+.....|..|....+.+|+.|+.|..+|+........++++|...|..++|++++++||+|+.|+.+.|||....+.+.
T Consensus 259 h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~- 337 (484)
T KOG0305|consen 259 HASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF- 337 (484)
T ss_pred cCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE-
Confidence 4456889999999999999999999999977655555689999999999999999999999999999999995544443
Q ss_pred EeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEE--ECCCcEEEEECCCCCCC
Q 014003 230 INLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAG--AQDGNILVWKGIPNTQN 304 (432)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g--~~dg~i~~wd~~~~~~~ 304 (432)
.+..|.+.|.+++|+|- +||+| +.|+.|++||..++..
T Consensus 338 ------------------------------------~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~- 380 (484)
T KOG0305|consen 338 ------------------------------------TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR- 380 (484)
T ss_pred ------------------------------------EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-
Confidence 34688999999999986 78885 5799999999998753
Q ss_pred ccccceeeeccccCeEEEEEe--CCEEEE--EeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcE
Q 014003 305 PFQLAALLKGHTRPVTCLAVG--GKRLYS--GSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTI 378 (432)
Q Consensus 305 ~~~~~~~~~~h~~~v~~l~~~--~~~l~s--gs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i 378 (432)
+.... -...|.+|.|+ .+.|++ |..++.|.||+..+.+.+..+.+|...|..++++ +..+++|+.|.++
T Consensus 381 ----i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETl 455 (484)
T KOG0305|consen 381 ----IDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETL 455 (484)
T ss_pred ----ecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcE
Confidence 34333 45679999998 333544 5567899999999999999999999999999998 6899999999999
Q ss_pred EEEEcCCCCc
Q 014003 379 KVWIMTEEGN 388 (432)
Q Consensus 379 ~iwd~~~~~~ 388 (432)
++|++-....
T Consensus 456 rfw~~f~~~~ 465 (484)
T KOG0305|consen 456 RFWNLFDERP 465 (484)
T ss_pred EeccccCCCC
Confidence 9999977533
No 91
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=8.9e-24 Score=207.14 Aligned_cols=210 Identities=19% Similarity=0.188 Sum_probs=157.3
Q ss_pred CCCCCCCCCCCCCCCCCCC-ceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeecc
Q 014003 83 TLPVSNHKKSPPSYNCPKN-NVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (432)
Q Consensus 83 ~~~~~gh~~~v~~~~~s~~-g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (432)
...+.||.+.|.+++|+|+ +.+||||+.||+|+||++....... .
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~---~------------------------------- 112 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV---K------------------------------- 112 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc---c-------------------------------
Confidence 3467899999999999996 8999999999999999865432100 0
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCE-EEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDK-LYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI 240 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~-l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~ 240 (432)
....++..+.+|...|.+++|+|++.. |++++.|++|++||+++++....+.
T Consensus 113 ------------------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--------- 165 (568)
T PTZ00420 113 ------------------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--------- 165 (568)
T ss_pred ------------------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe---------
Confidence 000234567899999999999998876 5799999999999999887554331
Q ss_pred ECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccC
Q 014003 241 CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (432)
Q Consensus 241 ~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~ 318 (432)
+...|.++.|+++ ++++++.|+.|++||++++. .+..+.+|.+.
T Consensus 166 -----------------------------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~-----~i~tl~gH~g~ 211 (568)
T PTZ00420 166 -----------------------------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE-----IASSFHIHDGG 211 (568)
T ss_pred -----------------------------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc-----EEEEEecccCC
Confidence 3356889999887 88889999999999999864 46778889876
Q ss_pred eEEEE-----E--eCCEEEEEeCCC----eEEEEECCC-CceEEEecCCCCC-cEEEEEc---CCEEEEEeCCCcEEEEE
Q 014003 319 VTCLA-----V--GGKRLYSGSMDN----TIRVWDLDT-LEAVMTLNGHTDA-PMSLLCW---DQYLLSCSLDNTIKVWI 382 (432)
Q Consensus 319 v~~l~-----~--~~~~l~sgs~dg----~I~vwd~~~-~~~~~~~~~~~~~-v~~~~~~---~~~l~s~s~dg~i~iwd 382 (432)
+.+.. | +++++++++.|+ .|+|||+++ .+++..+..+... +....++ +.++++|+.|+.|++|+
T Consensus 212 ~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e 291 (568)
T PTZ00420 212 KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQ 291 (568)
T ss_pred ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence 54322 2 367888887774 799999995 5666665433321 1111222 67899999999999999
Q ss_pred cCCCC
Q 014003 383 MTEEG 387 (432)
Q Consensus 383 ~~~~~ 387 (432)
+..+.
T Consensus 292 ~~~~~ 296 (568)
T PTZ00420 292 HSLGS 296 (568)
T ss_pred ccCCc
Confidence 97653
No 92
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9.9e-23 Score=176.74 Aligned_cols=243 Identities=14% Similarity=0.195 Sum_probs=192.3
Q ss_pred EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCce---eeEEE-CCCEEEEE--cCCeEEE
Q 014003 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV---GSLIC-EGPWVFVG--MPNVVKA 256 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~---~~~~~-~~~~l~~~--~~~~i~v 256 (432)
++.+.+..-...|+++.|+++|.+|++++.|.++++||..++++.+++.....- .+... +...+.++ .|..|+.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 455667777899999999999999999999999999999999999999876443 33333 44455555 4889999
Q ss_pred EEccCCceE-eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEe
Q 014003 257 WHIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGS 333 (432)
Q Consensus 257 wd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs 333 (432)
.++.+++.+ -+.+|...|.++..+|- .+++++.|++|++||++..+. ...+.....++.+....|-++|++.
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c-----qg~l~~~~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC-----QGLLNLSGRPIAAFDPEGLIFALAN 159 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC-----ceEEecCCCcceeECCCCcEEEEec
Confidence 999999876 46799999999999986 999999999999999997643 3333333445544444488899998
Q ss_pred CCCeEEEEECCCC--ceEEEec---CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEee
Q 014003 334 MDNTIRVWDLDTL--EAVMTLN---GHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGG 406 (432)
Q Consensus 334 ~dg~I~vwd~~~~--~~~~~~~---~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 406 (432)
....|++||+++. .+..++. +.......+.|+ |++|+.+...+.+++.|.-++..+..+..+.... .+...+
T Consensus 160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~-~~~~~a 238 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG-NLPLSA 238 (311)
T ss_pred CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC-CcceeE
Confidence 8889999999974 3444443 234556777777 8999999999999999999999777777665543 233566
Q ss_pred eeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 407 LNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 407 ~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.|+||++ ++++|+.||+|.+|++++
T Consensus 239 ~ftPds~-Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 239 TFTPDSK-FVLSGSDDGTIHVWNLET 263 (311)
T ss_pred EECCCCc-EEEEecCCCcEEEEEcCC
Confidence 7799999 999999999999999875
No 93
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=9.5e-24 Score=182.21 Aligned_cols=262 Identities=15% Similarity=0.124 Sum_probs=207.3
Q ss_pred CCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCC-ceEEeeccCceeeCC
Q 014003 90 KKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK-NVCYHWLSGNCVKGD 168 (432)
Q Consensus 90 ~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~ 168 (432)
++.|.++.|+|.+..|..++.||+++++++...... ...++... .-|.+-....+++|+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~--------------------~~~~~~~plL~c~F~d~~~~~~G~ 72 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK--------------------LKFKHGAPLLDCAFADESTIVTGG 72 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh--------------------hheecCCceeeeeccCCceEEEec
Confidence 677999999999999999999999999976654221 11111112 334444566899999
Q ss_pred CCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEE
Q 014003 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFV 248 (432)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (432)
.||.|+.+|++++. ...+..|.++|.+|.+++....+++||+|++|++||.+.......+.....+.++...+..|++
T Consensus 73 ~dg~vr~~Dln~~~--~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvV 150 (323)
T KOG1036|consen 73 LDGQVRRYDLNTGN--EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVV 150 (323)
T ss_pred cCceEEEEEecCCc--ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEE
Confidence 99999999998863 4456789999999999998899999999999999999988888888888888888876666655
Q ss_pred -EcCCeEEEEEccCCceEe---ecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccc------
Q 014003 249 -GMPNVVKAWHIESSAEFS---LDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT------ 316 (432)
Q Consensus 249 -~~~~~i~vwd~~~~~~~~---~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~------ 316 (432)
+.+..+.+||+++..... .....-++.+++..|+ -+++++-||.|.+=.+...... ......++.|.
T Consensus 151 g~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~-~skkyaFkCHr~~~~~~ 229 (323)
T KOG1036|consen 151 GTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA-QSKKYAFKCHRLSEKDT 229 (323)
T ss_pred eecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH-hhhceeEEeeecccCCc
Confidence 689999999999876543 4455667889988886 7899999999887665554111 12234455554
Q ss_pred ---cCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeC
Q 014003 317 ---RPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL 374 (432)
Q Consensus 317 ---~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~ 374 (432)
-+|.+|+|+ .+.|+||+.||.|.+||+.+.+.+..+......|.+++|+ |..||.++.
T Consensus 230 ~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 230 EIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 368899998 6789999999999999999999999998888889999998 788888875
No 94
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.4e-23 Score=178.82 Aligned_cols=256 Identities=14% Similarity=0.173 Sum_probs=205.1
Q ss_pred ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC
Q 014003 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~ 233 (432)
.+-|.+..+.++.++.||.+++|++... .+...+ .|..++++++|.+ ...+++|+.||.|+.+|+++++....-.+.
T Consensus 18 ~v~f~~~~~~LLvssWDgslrlYdv~~~-~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~igth~ 94 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSSWDGSLRLYDVPAN-SLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQIGTHD 94 (323)
T ss_pred eEEEcCcCCcEEEEeccCcEEEEeccch-hhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcceeeccCC
Confidence 4455566778888899999999999776 434444 5899999999975 567999999999999999999999888899
Q ss_pred CceeeEEE---CCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccce
Q 014003 234 AEVGSLIC---EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAA 310 (432)
Q Consensus 234 ~~~~~~~~---~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~ 310 (432)
..+.++.. .+.+++++.|+.|++||.+.............|.++....+.|++|+.+..+.+||+++..... ..
T Consensus 95 ~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~---q~ 171 (323)
T KOG1036|consen 95 EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF---QR 171 (323)
T ss_pred CceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchh---hh
Confidence 99988873 6788889999999999999766555555566999999999999999999999999999875421 11
Q ss_pred eeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCC----ceEEEecCCCC---------CcEEEEEc--CCEEEEEe
Q 014003 311 LLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL----EAVMTLNGHTD---------APMSLLCW--DQYLLSCS 373 (432)
Q Consensus 311 ~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~----~~~~~~~~~~~---------~v~~~~~~--~~~l~s~s 373 (432)
.-..-.-.+.|++.- +.-+++++-||.|.+=.++.. +....|+.|.. +|.+++|+ .+.|+||+
T Consensus 172 reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG 251 (323)
T KOG1036|consen 172 RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG 251 (323)
T ss_pred ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecC
Confidence 111223456677664 677889999999999887765 34456666643 58888888 47899999
Q ss_pred CCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEe
Q 014003 374 LDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC 420 (432)
Q Consensus 374 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~ 420 (432)
.||.|.+||+.+.+.+..+......+..+++ +.+|. .||.++
T Consensus 252 sDG~V~~Wd~~~rKrl~q~~~~~~SI~slsf----s~dG~-~LAia~ 293 (323)
T KOG1036|consen 252 SDGIVNIWDLFNRKRLKQLAKYETSISSLSF----SMDGS-LLAIAS 293 (323)
T ss_pred CCceEEEccCcchhhhhhccCCCCceEEEEe----ccCCC-eEEEEe
Confidence 9999999999999888888777666777777 78999 787775
No 95
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.8e-23 Score=178.84 Aligned_cols=235 Identities=14% Similarity=0.199 Sum_probs=191.5
Q ss_pred eecCCCceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCC--EEEEEeCCCcEEEEeCCCCc
Q 014003 148 ERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSD--KLYSGSRDGTVQLWDCHTGQ 225 (432)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~--~l~s~s~Dg~v~iWd~~~~~ 225 (432)
+.|.....|..-....+++|+.|-+|+|||+... ..+..+-.|.+.|+++.|.+.-. .|++|+.||.|.+|+.....
T Consensus 40 ~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~-~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~ 118 (362)
T KOG0294|consen 40 SAHAGSITALAVSGPYVASGSSDETIHIYDMRKR-KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE 118 (362)
T ss_pred cccccceeEEEecceeEeccCCCCcEEEEeccch-hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE
Confidence 3455567788888899999999999999999887 66778889999999999987654 89999999999999999887
Q ss_pred eeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCC
Q 014003 226 SASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQ 303 (432)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~ 303 (432)
++..+ ..|.+.|+.++++|. +.++.+.|+.+++||+-.+..
T Consensus 119 ~~~sl-------------------------------------K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 119 LLKSL-------------------------------------KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred Eeeee-------------------------------------cccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 77655 578888999999998 778899999999999998864
Q ss_pred CccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc-CCEEEEEeCCCcEEE
Q 014003 304 NPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKV 380 (432)
Q Consensus 304 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~s~dg~i~i 380 (432)
. .+..+. +. -+.+.|+ |.+++.+..+ .|-+|.+++.+....+.. ...+.++.|. +..|++|..|+.|.+
T Consensus 162 a---~v~~L~-~~--at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 162 A---FVLNLK-NK--ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFLDGSELLVGGDNEWISL 233 (362)
T ss_pred c---eeeccC-Cc--ceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeecCCceEEEecCCceEEE
Confidence 2 111121 22 2337776 8888888766 488999988777666653 2556777776 799999999999999
Q ss_pred EEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 381 WIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 381 wd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
||.+...++..+..|...+..+.+. -.|++. +|++++.||.|+|||+.
T Consensus 234 ~D~ds~~~~~~~~AH~~RVK~i~~~--~~~~~~-~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 234 KDTDSDTPLTEFLAHENRVKDIASY--TNPEHE-YLVTASSDGFIKVWDID 281 (362)
T ss_pred eccCCCccceeeecchhheeeeEEE--ecCCce-EEEEeccCceEEEEEcc
Confidence 9999988999999999998887743 256776 99999999999999985
No 96
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.9e-24 Score=193.68 Aligned_cols=270 Identities=20% Similarity=0.227 Sum_probs=200.6
Q ss_pred CCCCCCCCCCCcee-cCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCC
Q 014003 91 KSPPSYNCPKNNVR-VSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDE 169 (432)
Q Consensus 91 ~~v~~~~~s~~g~~-las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 169 (432)
..|.++.|||..-+ +|.++ .-.+.|++..+-+.. ..... .+.....+||-..+..+++|+.
T Consensus 27 ~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~----------------k~~sr-Fk~~v~s~~fR~DG~LlaaGD~ 88 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVR----------------KTFSR-FKDVVYSVDFRSDGRLLAAGDE 88 (487)
T ss_pred CcceeEecCCCCCCceEEec-ccEEEEEecchhhhh----------------hhHHh-hccceeEEEeecCCeEEEccCC
Confidence 56899999885544 44443 345666643322110 00000 1111236677778889999999
Q ss_pred CCeEEEEeCCCCcEEEEEEecccCcEEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEE
Q 014003 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFV 248 (432)
Q Consensus 170 d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (432)
.|.|+|+|..+ ...+..+++|+.+|..+.|+|+ +..|++|+.|+.+++||+.+....
T Consensus 89 sG~V~vfD~k~-r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~--------------------- 146 (487)
T KOG0310|consen 89 SGHVKVFDMKS-RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ--------------------- 146 (487)
T ss_pred cCcEEEecccc-HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE---------------------
Confidence 99999999654 3567788999999999999985 567888899999999999887642
Q ss_pred EcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe
Q 014003 249 GMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG 325 (432)
Q Consensus 249 ~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 325 (432)
..+.+|..-|.+.+++|- ++++|++||+|++||++.... .+.++ .|..+|..+.+-
T Consensus 147 ----------------~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~----~v~el-nhg~pVe~vl~l 205 (487)
T KOG0310|consen 147 ----------------AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS----RVVEL-NHGCPVESVLAL 205 (487)
T ss_pred ----------------EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc----eeEEe-cCCCceeeEEEc
Confidence 134688999999999876 899999999999999998742 34555 588999988874
Q ss_pred --CCEEEEEeCCCeEEEEECCCCc-eEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcc
Q 014003 326 --GKRLYSGSMDNTIRVWDLDTLE-AVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHG 400 (432)
Q Consensus 326 --~~~l~sgs~dg~I~vwd~~~~~-~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 400 (432)
|..+++++. ..|+|||+-+|. .+..+..|...|+|+.+. +..|++++.|+.|++||+.+-+.+.. .....++-
T Consensus 206 psgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s-~~~~~pvL 283 (487)
T KOG0310|consen 206 PSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHS-WKYPGPVL 283 (487)
T ss_pred CCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEe-eeccccee
Confidence 688888764 579999999554 455555699999999988 59999999999999999766544333 34455566
Q ss_pred eEEEeeeeCCCCCcEEEEEeCCCeEEEe
Q 014003 401 VLALGGLNDPDGNPVLICSCNDDSVHLY 428 (432)
Q Consensus 401 ~~~~~~~~sp~g~~~l~sg~~Dg~I~iw 428 (432)
.+++ +|+++ .++.|..||.+.+=
T Consensus 284 siav----s~dd~-t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 284 SIAV----SPDDQ-TVVIGMSNGLVSIR 306 (487)
T ss_pred eEEe----cCCCc-eEEEecccceeeee
Confidence 6666 78888 88999999987653
No 97
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7.5e-24 Score=183.22 Aligned_cols=254 Identities=20% Similarity=0.289 Sum_probs=194.7
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCC----Cc--eeEEEeCCC
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT----GQ--SASVINLGA 234 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~----~~--~~~~~~~~~ 234 (432)
.+.|.+++.|.+.++|.++++ .++.++.||.+.|++|+|++.+.++++++.|++..||...- .+ ........+
T Consensus 160 qpi~gtASADhTA~iWs~Esg-~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 160 QPICGTASADHTARIWSLESG-ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred CcceeecccccceeEEeeccc-cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 347888999999999999999 88999999999999999999999999999999999998321 11 111111111
Q ss_pred ceeeEEECCCEEEEE--cC-CeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccc
Q 014003 235 EVGSLICEGPWVFVG--MP-NVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLA 309 (432)
Q Consensus 235 ~~~~~~~~~~~l~~~--~~-~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~ 309 (432)
+..+..-+....-.+ .| ..|++ ....+.+|.+.|.+..|-.. .+++++.|.+-.+||+.++. ++
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRv------Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge-----~v 307 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRV------PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE-----VV 307 (481)
T ss_pred hhhcccccccccccccccCCceeee------eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc-----ee
Confidence 111111111111100 11 12221 13467789999999988655 99999999999999999985 58
Q ss_pred eeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCC-ceEEEecCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEcCC
Q 014003 310 ALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 310 ~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~-~~~~~~~~~~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~ 385 (432)
..+.+|....+.++-+ .+++++++.|-+.++||.+.. ..+..|.||...|++..|. +..+++|+.|.+|++||+++
T Consensus 308 ~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 308 NILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRN 387 (481)
T ss_pred ccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeecc
Confidence 8899999998877665 778899999999999999853 4478899999999999999 89999999999999999999
Q ss_pred CCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 386 EGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
............+++.+++ + .|.++++.--++..|++||+.
T Consensus 388 MRsplATIRtdS~~NRvav----s-~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 388 MRSPLATIRTDSPANRVAV----S-KGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred ccCcceeeecCCccceeEe----e-cCCceEEeccCCceEEEEecC
Confidence 8765555555566677777 3 455589999999999999985
No 98
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=2e-22 Score=194.24 Aligned_cols=265 Identities=18% Similarity=0.282 Sum_probs=208.5
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC-CceeeEE
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG-AEVGSLI 240 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~-~~~~~~~ 240 (432)
..++-|+..|.+++|++.++ +.+.+++++.+.|+++.-+|-=..++.|..+|+|.++|++.++.+..+++. +.+..+.
T Consensus 173 NKIvvGs~~G~lql~Nvrt~-K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslS 251 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTG-KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLS 251 (910)
T ss_pred eeEEEeecCCcEEEEEeccC-cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEE
Confidence 36889999999999999998 899999999999999999999899999999999999999999999999997 8888887
Q ss_pred E--CCC-EEEEE-cCCeEEEEEccCCceE--eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCC--------
Q 014003 241 C--EGP-WVFVG-MPNVVKAWHIESSAEF--SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQN-------- 304 (432)
Q Consensus 241 ~--~~~-~l~~~-~~~~i~vwd~~~~~~~--~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~-------- 304 (432)
+ +|. +++++ ..|.+.+||++..+.. ....|.+.+....+.+. .+++++.|..+++|=..++...
T Consensus 252 FrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~ 331 (910)
T KOG1539|consen 252 FRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG 331 (910)
T ss_pred eccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc
Confidence 5 455 44444 4588999999988765 34466677777777666 7777777777776633311000
Q ss_pred -------------------------------------------c-------------------cccc-------------
Q 014003 305 -------------------------------------------P-------------------FQLA------------- 309 (432)
Q Consensus 305 -------------------------------------------~-------------------~~~~------------- 309 (432)
+ .+++
T Consensus 332 GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W 411 (910)
T KOG1539|consen 332 GHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEW 411 (910)
T ss_pred CCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhh
Confidence 0 0000
Q ss_pred -------------------------eee-----eccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEe---cC
Q 014003 310 -------------------------ALL-----KGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTL---NG 354 (432)
Q Consensus 310 -------------------------~~~-----~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~---~~ 354 (432)
..+ +.-...+++++.+ |++.+.|++.|.|-+|++++|-...++ ..
T Consensus 412 ~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a 491 (910)
T KOG1539|consen 412 DNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA 491 (910)
T ss_pred cceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence 000 0011345666666 999999999999999999999999999 58
Q ss_pred CCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCC-----------------------------------------ceeE
Q 014003 355 HTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEG-----------------------------------------NLEV 391 (432)
Q Consensus 355 ~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~-----------------------------------------~~~~ 391 (432)
|..+|+.++.+ ++.+++++.+|-+++||..+.. .++.
T Consensus 492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~ 571 (910)
T KOG1539|consen 492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVRE 571 (910)
T ss_pred ccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHH
Confidence 99999999999 6889999999999999987543 1223
Q ss_pred EeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 392 AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 392 ~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+.+|...++.+.| ||||+ +|++++.|++||+||++|
T Consensus 572 f~gh~nritd~~F----S~Dgr-WlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 572 FWGHGNRITDMTF----SPDGR-WLISASMDSTIRTWDLPT 607 (910)
T ss_pred hhccccceeeeEe----CCCCc-EEEEeecCCcEEEEeccC
Confidence 3456666666666 99999 999999999999999986
No 99
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.5e-23 Score=178.58 Aligned_cols=297 Identities=17% Similarity=0.228 Sum_probs=198.7
Q ss_pred CccccccCCCCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCC
Q 014003 74 CRFAHTESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK 153 (432)
Q Consensus 74 ~~~l~~~~~~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (432)
-.|.|+. -...|+||+++|++++|+.||++|||.+.|++||||++.+.... ...++ ..+. .-..+.
T Consensus 71 ~~f~Hpl-~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~--eHr~~---R~nv--------e~dhpT 136 (420)
T KOG2096|consen 71 PTFVHPL-NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK--EHRCI---RQNV--------EYDHPT 136 (420)
T ss_pred CCcccch-hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh--hhhHh---hccc--------cCCCce
Confidence 4455643 34578999999999999999999999999999999998874321 00110 1111 001234
Q ss_pred ceEEeeccCc-eeeCCCCCeEEEEeCCC---CcE-----EEE---EEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 014003 154 NVCYHWLSGN-CVKGDECRFWHSWFCGE---GFT-----MLA---KLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDC 221 (432)
Q Consensus 154 ~~~~~~~~~~-~~~g~~d~~i~vw~~~~---~~~-----~~~---~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~ 221 (432)
.+.|.+.... +++.-....+++|.+.. +.- ..- .-+.|+-.|..+-...++.+++|++.|.+|.+|++
T Consensus 137 ~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~l 216 (420)
T KOG2096|consen 137 RVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDL 216 (420)
T ss_pred EEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEec
Confidence 5666666663 33444556788887732 100 011 11346677777777788999999999999999999
Q ss_pred CCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECC
Q 014003 222 HTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGI 299 (432)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~ 299 (432)
. |+.+..+... ...-+..+++|+ ++++++..-.|++|.+-
T Consensus 217 k-Gq~L~~idtn-------------------------------------q~~n~~aavSP~GRFia~~gFTpDVkVwE~~ 258 (420)
T KOG2096|consen 217 K-GQLLQSIDTN-------------------------------------QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPI 258 (420)
T ss_pred C-Cceeeeeccc-------------------------------------cccccceeeCCCCcEEEEecCCCCceEEEEE
Confidence 8 8877665421 122234455555 77777777788888764
Q ss_pred CCCC---CccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCC-------CceEEEe----cCCCCCcEEEE
Q 014003 300 PNTQ---NPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDT-------LEAVMTL----NGHTDAPMSLL 363 (432)
Q Consensus 300 ~~~~---~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~-------~~~~~~~----~~~~~~v~~~~ 363 (432)
-.+. .....+..+++|...|..++|+ ...+++.|.||+++|||++- .+.+++. ....+....+.
T Consensus 259 f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~ 338 (420)
T KOG2096|consen 259 FTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLE 338 (420)
T ss_pred eccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEE
Confidence 3332 2234466789999999999997 78899999999999999752 1222222 11223334555
Q ss_pred Ec--CCEEEEEeCCCcEEEEEcCCCCceeEEe-eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 364 CW--DQYLLSCSLDNTIKVWIMTEEGNLEVAY-THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 364 ~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
.+ ++.|+ .+....++++..++++....+. .|...+..+++ +++|+ ++++++ |..++++.
T Consensus 339 lsP~g~~lA-~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~----~~~g~-~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 339 LSPSGDSLA-VSFGSDLKVFASEDGKDYPELEDIHSTTISSISY----SSDGK-YIATCG-DRYVRVIR 400 (420)
T ss_pred eCCCCcEEE-eecCCceEEEEcccCccchhHHHhhcCceeeEEe----cCCCc-EEeeec-ceeeeeec
Confidence 55 45544 4556789999999877665544 47777777777 89999 666654 77888765
No 100
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=9.9e-24 Score=192.51 Aligned_cols=276 Identities=17% Similarity=0.241 Sum_probs=221.4
Q ss_pred CCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceE-EeeccCcee
Q 014003 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVC-YHWLSGNCV 165 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 165 (432)
-+|-.-|..++.|...+++++|+ .|.|+|||+..++...|....--+..++. -..| +.+++..++
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdny-------------iRSckL~pdgrtLi 481 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNY-------------IRSCKLLPDGRTLI 481 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccc-------------eeeeEecCCCceEE
Confidence 45667777888899999999999 89999999998865444332211122222 2334 456677999
Q ss_pred eCCCCCeEEEEeCCCC-cEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC-ceeeEE--E
Q 014003 166 KGDECRFWHSWFCGEG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA-EVGSLI--C 241 (432)
Q Consensus 166 ~g~~d~~i~vw~~~~~-~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~-~~~~~~--~ 241 (432)
.|++-.++.|||+... ......+..-.-...+++.+||.+..+++..||.|.|||+.+...++.++... ...|+. .
T Consensus 482 vGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~ 561 (705)
T KOG0639|consen 482 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK 561 (705)
T ss_pred eccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC
Confidence 9999999999999754 23333455445677889999999999999999999999999999999998543 344444 4
Q ss_pred CCCEEEE-EcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccC
Q 014003 242 EGPWVFV-GMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (432)
Q Consensus 242 ~~~~l~~-~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~ 318 (432)
+|.-|.+ |-|+.|+.||++++...........|.++...|+ ++++|-+++.+.+....... ...+..|..-
T Consensus 562 dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~------kyqlhlheSc 635 (705)
T KOG0639|consen 562 DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE------KYQLHLHESC 635 (705)
T ss_pred CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc------ceeecccccE
Confidence 6776665 5899999999999998888888899999988887 99999999999998877653 4567789999
Q ss_pred eEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEc
Q 014003 319 VTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 319 v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~ 383 (432)
|.++.|. |+++++.+.|..+..|.+.-|..+...+ ....|.++..+ +++|++||.|....||.+
T Consensus 636 VLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 636 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred EEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999997 9999999999999999999898888877 45567776665 899999999999888865
No 101
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=8.3e-23 Score=172.43 Aligned_cols=235 Identities=17% Similarity=0.222 Sum_probs=193.6
Q ss_pred EEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC---CCceeeEEE----CCCEEEEEcCCeEEEEE
Q 014003 186 AKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL---GAEVGSLIC----EGPWVFVGMPNVVKAWH 258 (432)
Q Consensus 186 ~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~---~~~~~~~~~----~~~~l~~~~~~~i~vwd 258 (432)
..+++|.+.|.+++|+.+|..|++|+.|+++.+|+++.......... ...+..+.+ ...+.+++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 45789999999999999999999999999999999988755544442 233444443 33456677999999999
Q ss_pred ccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeC
Q 014003 259 IESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM 334 (432)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~ 334 (432)
++.++........+.-.-+.|+|+ ++++++.|..|...|.++.+. ....+ ....+.-++|+ +++++....
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~-----~~~~~-~~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKI-----VNEEQ-FKFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccce-----eehhc-ccceeeeeeecCCCCEEEEecC
Confidence 999998776666666666777777 999999999999999988642 32222 23445566665 777777777
Q ss_pred CCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCC
Q 014003 335 DNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDG 412 (432)
Q Consensus 335 dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g 412 (432)
.|+|.|......+++.+++.|.....|+.++ |+++|+|+.|-.+.+||+.+.-+.+.+..+.-++..++| |.||
T Consensus 168 lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSF----S~dg 243 (313)
T KOG1407|consen 168 LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSF----SHDG 243 (313)
T ss_pred CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEe----ccCc
Confidence 8999999999999999999999999999998 899999999999999999999999999999999998888 8999
Q ss_pred CcEEEEEeCCCeEEEeeCC
Q 014003 413 NPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 413 ~~~l~sg~~Dg~I~iwdl~ 431 (432)
+ +||+|++|..|-|=+++
T Consensus 244 ~-~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 244 R-MLASASEDHFIDIAEVE 261 (313)
T ss_pred c-eeeccCccceEEeEecc
Confidence 9 99999999999765554
No 102
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=5.8e-23 Score=185.91 Aligned_cols=244 Identities=19% Similarity=0.279 Sum_probs=191.5
Q ss_pred eeeeecCCCceE--EeeccCceeeCCCCCeEEEEeCCCCcEE---EEE-------------E-ecccCcEEEEEecCCCC
Q 014003 145 RTLERTTPKNVC--YHWLSGNCVKGDECRFWHSWFCGEGFTM---LAK-------------L-EGHKKAVSGIALPLRSD 205 (432)
Q Consensus 145 ~~~~~~~~~~~~--~~~~~~~~~~g~~d~~i~vw~~~~~~~~---~~~-------------l-~~H~~~V~~l~~~~~~~ 205 (432)
++...|....+| +.+++....+++.+++|.-|++.++... +.. - ++|.+.|.+++.++||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 344444444444 4556669999999999999999776422 111 1 37899999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--E
Q 014003 206 KLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--M 283 (432)
Q Consensus 206 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~ 283 (432)
||++|+.|..|.||+.++.+.++.+ .+|.+.|.+++|-.. .
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~-------------------------------------~ghr~~V~~L~fr~gt~~ 258 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVF-------------------------------------KGHRGAVSSLAFRKGTSE 258 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcc-------------------------------------cccccceeeeeeecCccc
Confidence 9999999999999999998877654 688899999998755 9
Q ss_pred EEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEE
Q 014003 284 LFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMS 361 (432)
Q Consensus 284 l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~ 361 (432)
+++++.|++|++|++.... .+.++.+|.+.|..|... ++.+.+|+.|.++++|++. -+....+.+|.+.+-|
T Consensus 259 lys~s~Drsvkvw~~~~~s-----~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidc 332 (479)
T KOG0299|consen 259 LYSASADRSVKVWSIDQLS-----YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDC 332 (479)
T ss_pred eeeeecCCceEEEehhHhH-----HHHHHhCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeee
Confidence 9999999999999998753 577888999999999775 7777778899999999994 4455667788888999
Q ss_pred EEEc-CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcce--------EEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 362 LLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGV--------LALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 362 ~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+++- +..+++||.||.|.+|++.+.+++.......+.... +..+++-.|... ++++|+.+|.|++|.+.+
T Consensus 333 v~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 333 VAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIED 411 (479)
T ss_pred EEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecC
Confidence 9887 789999999999999999998887765532111111 222222256666 999999999999998753
No 103
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=4.7e-23 Score=194.91 Aligned_cols=233 Identities=26% Similarity=0.443 Sum_probs=194.1
Q ss_pred cEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE--------CCCEEEEEcCCe
Q 014003 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC--------EGPWVFVGMPNV 253 (432)
Q Consensus 182 ~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~ 253 (432)
++..+.+.||+..|..+++. ++..++++|.||++++|+-..++-+.......+...+.+ .+.+++++.|..
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~-~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVT-DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEec-CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 46778899999999999875 445899999999999999877776654444333332221 244667789999
Q ss_pred EEEEEccCCceE-eecCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEE-eCCEEE
Q 014003 254 VKAWHIESSAEF-SLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV-GGKRLY 330 (432)
Q Consensus 254 i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~ 330 (432)
+.+|.+.+...+ .+.+|...|+++....+ .+++|+.|.++++|-... +...+++|+.+|.+++. ..+.++
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~-------l~~~l~gH~asVWAv~~l~e~~~v 155 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE-------LVYSLQGHTASVWAVASLPENTYV 155 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh-------hhcccCCcchheeeeeecCCCcEE
Confidence 999999988754 78999999999998877 889999999999997654 45668999999998876 477999
Q ss_pred EEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeC
Q 014003 331 SGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLND 409 (432)
Q Consensus 331 sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~s 409 (432)
|||.|.+|++|. .++++++|.+|...|..++.- +..+++++.||.|++|++ +++.+....+|..-+..+.. .
T Consensus 156 TgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~----~ 228 (745)
T KOG0301|consen 156 TGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISM----A 228 (745)
T ss_pred eccCcceeeecc--CCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEe----c
Confidence 999999999998 488999999999999999988 459999999999999999 78888888888877666664 4
Q ss_pred CCCCcEEEEEeCCCeEEEeeC
Q 014003 410 PDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 410 p~g~~~l~sg~~Dg~I~iwdl 430 (432)
+++. +++++++|++++||+.
T Consensus 229 ~~~~-~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 229 LSDG-LIVSTGEDRTLRIWKK 248 (745)
T ss_pred CCCC-eEEEecCCceEEEeec
Confidence 5556 8999999999999985
No 104
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.8e-22 Score=174.07 Aligned_cols=256 Identities=16% Similarity=0.207 Sum_probs=191.0
Q ss_pred CCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEee----cc
Q 014003 86 VSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHW----LS 161 (432)
Q Consensus 86 ~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 161 (432)
-.||++-|+++.|.+-|+++|++|.|++++||+.+++...+.-+.+-. .+.....-..| .+
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr---------------ah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR---------------AHDGSIWRVVWAHPEFG 73 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEE---------------ecCCcEEEEEecCcccc
Confidence 378999999999999999999999999999998765554333332221 12222333333 34
Q ss_pred CceeeCCCCCeEEEEeCCC--------CcEEEEEEecccCcEEEEEecCC--CCEEEEEeCCCcEEEEeCCCCceeEEEe
Q 014003 162 GNCVKGDECRFWHSWFCGE--------GFTMLAKLEGHKKAVSGIALPLR--SDKLYSGSRDGTVQLWDCHTGQSASVIN 231 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~--------~~~~~~~l~~H~~~V~~l~~~~~--~~~l~s~s~Dg~v~iWd~~~~~~~~~~~ 231 (432)
..+++.+.|+++.||+-.. ......++..-.+.|+++.|.|. |-.||+++.||++|||+...--.+..
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~-- 151 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ-- 151 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc--
Confidence 5889999999999998621 23455677778899999999884 77899999999999999764433322
Q ss_pred CCCceeeEEECCCEEEEEcCCeEEEEEccCCce---EeecCCcCCEEEEEEcCC-----EEEEEECC-----CcEEEEEC
Q 014003 232 LGAEVGSLICEGPWVFVGMPNVVKAWHIESSAE---FSLDGPVGEVYSMVVANE-----MLFAGAQD-----GNILVWKG 298 (432)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~---~~~~~~~~~v~~l~~~~~-----~l~~g~~d-----g~i~~wd~ 298 (432)
|.+...-. .....+..+..|+.|++. +|++|+.+ +.++||..
T Consensus 152 -------------------------W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 152 -------------------------WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred -------------------------chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 33322111 122345566778888876 77777766 58899987
Q ss_pred CCCCCCccccceeeeccccCeEEEEEe------CCEEEEEeCCCeEEEEECCCC--------------------ceEEEe
Q 014003 299 IPNTQNPFQLAALLKGHTRPVTCLAVG------GKRLYSGSMDNTIRVWDLDTL--------------------EAVMTL 352 (432)
Q Consensus 299 ~~~~~~~~~~~~~~~~h~~~v~~l~~~------~~~l~sgs~dg~I~vwd~~~~--------------------~~~~~~ 352 (432)
..+... +..+.++.+|..+|+.++|. -..||+++.|| |+||.++.. +.+..+
T Consensus 207 ~e~~rK-w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~ 284 (361)
T KOG2445|consen 207 NENGRK-WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL 284 (361)
T ss_pred cCCcce-eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec
Confidence 765422 56677888999999999995 34689999999 999998731 235667
Q ss_pred cCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 014003 353 NGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 353 ~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~ 385 (432)
..|.+.|..+.|+ |..|.+.+.||.|++|...-
T Consensus 285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred cCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 8999999999999 99999999999999997653
No 105
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.5e-22 Score=184.60 Aligned_cols=238 Identities=21% Similarity=0.295 Sum_probs=184.8
Q ss_pred CCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeec--CCCceEEeecc
Q 014003 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERT--TPKNVCYHWLS 161 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 161 (432)
..+..-++.|.++.|-.||+.||.|.+.|-++|+|..+ .... +.+..| +...+-|.+..
T Consensus 62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL------------------R~~~ah~apv~~~~f~~~d 122 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL------------------RQLYAHQAPVHVTKFSPQD 122 (487)
T ss_pred hhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH------------------HHHhhccCceeEEEecccC
Confidence 34566778899999999999999999999999998333 1100 011111 11233344444
Q ss_pred C-ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCC-CCEEEEEeCCCcEEEEeCCCC-ceeEEEeCCCceee
Q 014003 162 G-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTG-QSASVINLGAEVGS 238 (432)
Q Consensus 162 ~-~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~-~~~l~s~s~Dg~v~iWd~~~~-~~~~~~~~~~~~~~ 238 (432)
. .+++|+.|+.+++||+.+.. ....+.+|++.|.+.+|+|. +..++|||.||+|++||+++. ..+..+
T Consensus 123 ~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-------- 193 (487)
T KOG0310|consen 123 NTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-------- 193 (487)
T ss_pred CeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe--------
Confidence 4 78999999999999999985 47789999999999999885 558999999999999999876 444443
Q ss_pred EEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeecccc
Q 014003 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 239 ~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
.|..+|..+.+-|. .+++......|++||+.++.+ .+..+..|..
T Consensus 194 ------------------------------nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~q----ll~~~~~H~K 239 (487)
T KOG0310|consen 194 ------------------------------NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQ----LLTSMFNHNK 239 (487)
T ss_pred ------------------------------cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCce----ehhhhhcccc
Confidence 45666777777666 444444567899999987743 4555666999
Q ss_pred CeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 014003 318 PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMT 384 (432)
Q Consensus 318 ~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~ 384 (432)
.|+|+.+. +..|++|+-|+.+++||+.+.+.++.+. ..++|.+++.+ ++.++.|-.||.+.+=+..
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhh
Confidence 99999996 6999999999999999999999999987 67889999888 5899999999988777443
No 106
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.90 E-value=7.3e-22 Score=177.53 Aligned_cols=269 Identities=19% Similarity=0.279 Sum_probs=212.8
Q ss_pred CCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCCCC
Q 014003 92 SPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECR 171 (432)
Q Consensus 92 ~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 171 (432)
.+.++...+....+.+|+.|.++-+.|....+......++ .+.+ ..+-+++....+++++.|.
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh-----------~kki------~~v~~~~~~~~v~~aSad~ 283 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGH-----------TKKI------TSVKFHKDLDTVITASADE 283 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCc-----------ceEE------EEEEeccchhheeecCCcc
Confidence 3466666666788999999999999986665542211111 1111 2445677788999999999
Q ss_pred eEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCc---eeeE--EECCCEE
Q 014003 172 FWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE---VGSL--ICEGPWV 246 (432)
Q Consensus 172 ~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~---~~~~--~~~~~~l 246 (432)
.|+||..... ........|+++|+.+..+|.|.||++++.||+....|++++.++........ ..+. .++|.++
T Consensus 284 ~i~vws~~~~-s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLif 362 (506)
T KOG0289|consen 284 IIRVWSVPLS-SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIF 362 (506)
T ss_pred eEEeeccccc-cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEE
Confidence 9999999766 34566789999999999999999999999999999999999999888877522 2333 3577777
Q ss_pred EEE-cCCeEEEEEccCCceE-eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeec-cccCeEE
Q 014003 247 FVG-MPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG-HTRPVTC 321 (432)
Q Consensus 247 ~~~-~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~-h~~~v~~ 321 (432)
.+| .|+.+++||+..+... .+.+|.++|.++.|+.+ ++++++.|+.|++||++..+. ..++.. ...++.+
T Consensus 363 gtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-----~kt~~l~~~~~v~s 437 (506)
T KOG0289|consen 363 GTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-----FKTIQLDEKKEVNS 437 (506)
T ss_pred eccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-----cceeecccccccee
Confidence 766 7999999999988744 67899999999999999 999999999999999998654 333322 2236888
Q ss_pred EEEe--CCEEEEEeCCCeEEEEEC--CCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEc
Q 014003 322 LAVG--GKRLYSGSMDNTIRVWDL--DTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 322 l~~~--~~~l~sgs~dg~I~vwd~--~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~ 383 (432)
+.|+ |.+|+.++.|=.|++++- .++.++..+..|.+..+.+.|. .++++++|.|..++++.+
T Consensus 438 ~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 438 LSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 8887 999999988877777773 3677888899999888888888 589999999999888754
No 107
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.6e-22 Score=182.38 Aligned_cols=226 Identities=22% Similarity=0.261 Sum_probs=178.0
Q ss_pred ceeeCCCCCeEEEEeCC--CCcEEEEEE------------------ecccCcEEEEEecCC-CCEEEEEeCCCcEEEEeC
Q 014003 163 NCVKGDECRFWHSWFCG--EGFTMLAKL------------------EGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDC 221 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~--~~~~~~~~l------------------~~H~~~V~~l~~~~~-~~~l~s~s~Dg~v~iWd~ 221 (432)
.++-|..|..|.|||++ ....+..+| .+|++.|.+|+|+.. .+.|||||.|.+|++||+
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~ 273 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV 273 (463)
T ss_pred eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence 78899999999999984 211222222 379999999999764 467999999999999999
Q ss_pred CCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEEC
Q 014003 222 HTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKG 298 (432)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~ 298 (432)
.++++..++ ..|...|.++.|++. .|++|+.|+++.+.|.
T Consensus 274 ~~g~p~~s~-------------------------------------~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 274 DTGKPKSSI-------------------------------------THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred CCCCcceeh-------------------------------------hhcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence 999988766 357788999999987 9999999999999999
Q ss_pred CCCCCCccccceeeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCC-ceEEEecCCCCCcEEEEEc---CCEEEE
Q 014003 299 IPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCW---DQYLLS 371 (432)
Q Consensus 299 ~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~-~~~~~~~~~~~~v~~~~~~---~~~l~s 371 (432)
+.... .-..++ -.+.|-.++|+ ...+++++.||+|+-+|+|.. +++.+++.|.+.|.+++++ ..++++
T Consensus 317 R~~~~----s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t 391 (463)
T KOG0270|consen 317 RDPSN----SGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLST 391 (463)
T ss_pred cCccc----cCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceee
Confidence 96432 122222 34567788886 778999999999999999975 9999999999999999998 589999
Q ss_pred EeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 372 CSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 372 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
++.|+.|++|++..... .....|...... ..+..+.|+-..+++.|+..+.++|||+.+
T Consensus 392 ~s~d~~Vklw~~~~~~~-~~v~~~~~~~~r-l~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDVDSP-KSVKEHSFKLGR-LHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred ccccceEEEEeecCCCC-cccccccccccc-eeecccCCCcceEEEecCccceEEEeeccc
Confidence 99999999999975543 222233322222 334455788777899999999999999753
No 108
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=4.3e-22 Score=170.82 Aligned_cols=293 Identities=19% Similarity=0.191 Sum_probs=212.5
Q ss_pred CCCCCCCCCCC-CCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceee
Q 014003 88 NHKKSPPSYNC-PKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVK 166 (432)
Q Consensus 88 gh~~~v~~~~~-s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (432)
-|.++|+++.. .-.|+|+.||+.||.|-|||++........ .-+|.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s------------------------~li~k--------- 87 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS------------------------GLIAK--------- 87 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc------------------------cceeh---------
Confidence 38899999999 678999999999999999987654321000 00110
Q ss_pred CCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE-----
Q 014003 167 GDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI----- 240 (432)
Q Consensus 167 g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~----- 240 (432)
.+.+ + -...-.+|+-.|.++.|-| |...+.++|.|.++++||.++.+....++.++.+....
T Consensus 88 -----~~c~--v-----~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a 155 (397)
T KOG4283|consen 88 -----HKCI--V-----AKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMA 155 (397)
T ss_pred -----eeee--c-----cccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhh
Confidence 0111 0 0112357999999999966 67789999999999999999999999999887765432
Q ss_pred ECCCEEEEE-cCCeEEEEEccCCce-EeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCC----------c
Q 014003 241 CEGPWVFVG-MPNVVKAWHIESSAE-FSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQN----------P 305 (432)
Q Consensus 241 ~~~~~l~~~-~~~~i~vwd~~~~~~-~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~----------~ 305 (432)
....+++++ .+-.|++.|+.++.. ..+.+|.+.|.++.|+|. .|++|+.||.|++||++..... .
T Consensus 156 ~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~ 235 (397)
T KOG4283|consen 156 MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKR 235 (397)
T ss_pred hcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCcc
Confidence 345567777 567999999999985 478999999999999998 8999999999999999875211 1
Q ss_pred cccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEE-e--cCCCCC---cEEEE-EcCCEEEEEeCCC
Q 014003 306 FQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMT-L--NGHTDA---PMSLL-CWDQYLLSCSLDN 376 (432)
Q Consensus 306 ~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~-~--~~~~~~---v~~~~-~~~~~l~s~s~dg 376 (432)
.+.++.-..|.+.+..++|. +.++++.+.|..+++|+..+|+.... + ..|+.. -.-+. .....++---.++
T Consensus 236 ~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~ 315 (397)
T KOG4283|consen 236 PPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDG 315 (397)
T ss_pred CccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCC
Confidence 12223345788899999996 99999999999999999988764211 1 011111 01111 1233444444568
Q ss_pred cEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 377 TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 377 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
.+.++.+-++..+..+..|...+.+.++ .|+=+ -..+|..|+.|..|-.
T Consensus 316 ~lall~~~sgs~ir~l~~h~k~i~c~~~----~~~fq-~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 316 SLALLNLLEGSFVRRLSTHLKRINCAAY----RPDFE-QCFTGDMNGNIYMWSP 364 (397)
T ss_pred eEEEEEccCceEEEeeecccceeeEEee----cCchh-hhhccccCCccccccc
Confidence 8999999999999888888655544444 56656 6788999999998853
No 109
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=2.4e-22 Score=199.37 Aligned_cols=264 Identities=16% Similarity=0.178 Sum_probs=199.6
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCC--ceEEeeccC
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHWLSG 162 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 162 (432)
...-|.+.|.++.|++||+|||+||+|+.|.||.....+.. +.....-.......+....++..|..+ .+|..|+..
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~-~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~ 142 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSG-TVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS 142 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCc-ccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence 45789999999999999999999999999999987751110 000000001112233444566666655 567777788
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEEC
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICE 242 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~ 242 (432)
.+++++.|++|.+|+..+. +.+..+++|.+.|-.+.|.|-|+||||-+.|++|++|++.+....+.+....
T Consensus 143 ~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf-------- 213 (942)
T KOG0973|consen 143 LLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF-------- 213 (942)
T ss_pred EEEEecccceEEEEccccc-eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch--------
Confidence 9999999999999999888 8999999999999999999999999999999999999987766665553211
Q ss_pred CCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEE----CCCcEEEEECCCCCCCccccceeeeccc
Q 014003 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA----QDGNILVWKGIPNTQNPFQLAALLKGHT 316 (432)
Q Consensus 243 ~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~----~dg~i~~wd~~~~~~~~~~~~~~~~~h~ 316 (432)
..........-+.|+|+ +|++.. .-..+.|.+-.+ ++.-..+-+|.
T Consensus 214 -----------------------~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t-----Wk~~~~LvGH~ 265 (942)
T KOG0973|consen 214 -----------------------EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT-----WKVDKDLVGHS 265 (942)
T ss_pred -----------------------hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC-----ceeeeeeecCC
Confidence 11223345667888888 666542 223566766533 45567788999
Q ss_pred cCeEEEEEe-------CC------------EEEEEeCCCeEEEEECCCCceEEEec-CCCCCcEEEEEc--CCEEEEEeC
Q 014003 317 RPVTCLAVG-------GK------------RLYSGSMDNTIRVWDLDTLEAVMTLN-GHTDAPMSLLCW--DQYLLSCSL 374 (432)
Q Consensus 317 ~~v~~l~~~-------~~------------~l~sgs~dg~I~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~s~s~ 374 (432)
.++.++.|+ .+ .+|+|+.|++|.||.....+++.... -....|..++|+ |-.|+++|.
T Consensus 266 ~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 266 APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEec
Confidence 999999995 12 68999999999999998888876653 345679999999 789999999
Q ss_pred CCcEEEEEcCCC
Q 014003 375 DNTIKVWIMTEE 386 (432)
Q Consensus 375 dg~i~iwd~~~~ 386 (432)
||+|.+..+...
T Consensus 346 DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 346 DGTVALIHFEEK 357 (942)
T ss_pred CCeEEEEEcchH
Confidence 999999998753
No 110
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=6.3e-20 Score=168.01 Aligned_cols=260 Identities=16% Similarity=0.247 Sum_probs=199.6
Q ss_pred eEEeeccC-ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC
Q 014003 155 VCYHWLSG-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (432)
Q Consensus 155 ~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~ 233 (432)
.|..+..+ .+++|+++|.|.||+..+. +..+....|.+.|.+++.-.+|.+ +||+.|..|..|| ..-+.++..+.+
T Consensus 250 l~v~F~engdviTgDS~G~i~Iw~~~~~-~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd-~~y~k~r~~elP 326 (626)
T KOG2106|consen 250 LCVTFLENGDVITGDSGGNILIWSKGTN-RISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWD-DNYRKLRETELP 326 (626)
T ss_pred EEEEEcCCCCEEeecCCceEEEEeCCCc-eEEeEeeecCCceEEEEEecCccE-eecCccceEEecc-ccccccccccCc
Confidence 34444443 7899999999999999776 555555599999999999888874 5599999999999 444455555544
Q ss_pred C---ceeeEEE-CCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccc
Q 014003 234 A---EVGSLIC-EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQ 307 (432)
Q Consensus 234 ~---~~~~~~~-~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~ 307 (432)
+ .+..+.. .+.++++...+.|..=+++++-.....+|..+...++.+|+ .+++++.|+.+++|+ .. +
T Consensus 327 e~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~-----k 399 (626)
T KOG2106|consen 327 EQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH-----K 399 (626)
T ss_pred hhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CC-----c
Confidence 3 3444553 34466666788888888888888888999999999999988 999999999999999 22 1
Q ss_pred cceeeeccccCeEEEEEe-CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 014003 308 LAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMT 384 (432)
Q Consensus 308 ~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~ 384 (432)
+... +.-..++.|+.|+ ...+|.|+..|...|.|.++...+..-.. +.++..+.++ |.+||.|+.|+.|+||-+.
T Consensus 400 ~~wt-~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 400 LEWT-KIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred eeEE-EEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 2222 2245778899998 33999999999999999999666655554 7888888887 8999999999999999998
Q ss_pred CCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 385 EEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
..+........... .......||+|++ ++.+-+.|-.|..|.
T Consensus 478 ~~g~~y~r~~k~~g--s~ithLDwS~Ds~-~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 478 ANGRKYSRVGKCSG--SPITHLDWSSDSQ-FLVSNSGDYEILYWK 519 (626)
T ss_pred CCCcEEEEeeeecC--ceeEEeeecCCCc-eEEeccCceEEEEEc
Confidence 77665554432222 2333445599999 999999999999994
No 111
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.8e-21 Score=176.63 Aligned_cols=261 Identities=20% Similarity=0.349 Sum_probs=200.5
Q ss_pred eeeCCCCC-eEEEEeCCCCcEEEEEEecc-cCcEEEEEecCCCCEEEEEeC-CCcEEEEeCCCCceeE-EEeCCCceeeE
Q 014003 164 CVKGDECR-FWHSWFCGEGFTMLAKLEGH-KKAVSGIALPLRSDKLYSGSR-DGTVQLWDCHTGQSAS-VINLGAEVGSL 239 (432)
Q Consensus 164 ~~~g~~d~-~i~vw~~~~~~~~~~~l~~H-~~~V~~l~~~~~~~~l~s~s~-Dg~v~iWd~~~~~~~~-~~~~~~~~~~~ 239 (432)
|.+++.|- .+.+||+.++ ....++++- ...-.++.. -++.+++++.. -..|.+|.+....... .+-.++++.++
T Consensus 10 ~sssS~d~~~~~~~dl~TG-t~~~~ykg~~~a~~~sl~~-l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al 87 (476)
T KOG0646|consen 10 CSSSSFDPINCIVWDLRTG-TSLLQYKGSYLAQAASLTA-LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHAL 87 (476)
T ss_pred EeccCCCCcceeEEecCCC-ceeEEecCcccccchhhhh-hchhheeeecccCccccccccCchhhhhhhcccccceeee
Confidence 44455554 4999999998 445556554 222222222 13466666654 4578999987655444 44466777777
Q ss_pred E--ECCCEEEEE-cCCeEEEEEccCCceE-eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCC----CCCccccc
Q 014003 240 I--CEGPWVFVG-MPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPN----TQNPFQLA 309 (432)
Q Consensus 240 ~--~~~~~l~~~-~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~----~~~~~~~~ 309 (432)
. +.|.++++| ..+.+++|.+.++..+ .+..|-..|+++.|+.| ++++|+.||.|.+|++..- .....++.
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 7 578899888 8999999999999965 46789999999999988 9999999999999986431 11124678
Q ss_pred eeeeccccCeEEEEEe----CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEc
Q 014003 310 ALLKGHTRPVTCLAVG----GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 310 ~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~ 383 (432)
..+..|.-+|+.+... ..+++++|.|.++++||+..+.++.++. ....+.+++.+ +..++.|+.+|.|.+.++
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeeh
Confidence 8899999999999986 4689999999999999999999998886 55667888877 789999999999999887
Q ss_pred CCCC----------------ceeEEeeccC--CcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 384 TEEG----------------NLEVAYTHNE--DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 384 ~~~~----------------~~~~~~~~~~--~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.... .+..+.+|.. .++++++ +-||. +|++|+.||.|+|||+.|
T Consensus 247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai----s~Dgt-lLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI----STDGT-LLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred hcCCcccccccccccccccceeeeeccccCCcceeEEEE----ecCcc-EEEeeCCCCCEEEEecch
Confidence 5432 3445566766 6777777 78999 999999999999999865
No 112
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=2.8e-22 Score=181.46 Aligned_cols=210 Identities=21% Similarity=0.325 Sum_probs=168.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCc-eecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeec
Q 014003 82 QTLPVSNHKKSPPSYNCPKNN-VRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWL 160 (432)
Q Consensus 82 ~~~~~~gh~~~v~~~~~s~~g-~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (432)
|...|.||+++=.++.|++.- -+|+||+.|++|++||+...... .
T Consensus 169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~---~------------------------------- 214 (422)
T KOG0264|consen 169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE---D------------------------------- 214 (422)
T ss_pred CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC---C-------------------------------
Confidence 445778888866778885443 34777777888888865543320 0
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCCC--ceeEEEeCCCcee
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTG--QSASVINLGAEVG 237 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~--~~~~~~~~~~~~~ 237 (432)
....+...+.+|++.|..++|++ +..+|++++.|+.+.|||++++ +..
T Consensus 215 -------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~---------- 265 (422)
T KOG0264|consen 215 -------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS---------- 265 (422)
T ss_pred -------------------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCc----------
Confidence 00144667899999999999987 5678999999999999999963 211
Q ss_pred eEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeec
Q 014003 238 SLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG 314 (432)
Q Consensus 238 ~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~ 314 (432)
....+|.+++.|++|+|- .||+|+.|++|.+||+++-.. ++..+.+
T Consensus 266 ---------------------------~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~----~lh~~e~ 314 (422)
T KOG0264|consen 266 ---------------------------HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK----PLHTFEG 314 (422)
T ss_pred ---------------------------ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc----CceeccC
Confidence 123678999999999986 899999999999999998753 6889999
Q ss_pred cccCeEEEEEe---CCEEEEEeCCCeEEEEECCCC--------------ceEEEecCCCCCcEEEEEc---CCEEEEEeC
Q 014003 315 HTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTL--------------EAVMTLNGHTDAPMSLLCW---DQYLLSCSL 374 (432)
Q Consensus 315 h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~--------------~~~~~~~~~~~~v~~~~~~---~~~l~s~s~ 374 (432)
|...|.++.|+ ...||+++.|+.+.|||+..- ++++.-.||...|..++|+ +-.|++++.
T Consensus 315 H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae 394 (422)
T KOG0264|consen 315 HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE 394 (422)
T ss_pred CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC
Confidence 99999999998 788999999999999998641 3467778999999999998 468999999
Q ss_pred CCcEEEEEcCC
Q 014003 375 DNTIKVWIMTE 385 (432)
Q Consensus 375 dg~i~iwd~~~ 385 (432)
|+.+.||.+..
T Consensus 395 DN~LqIW~~s~ 405 (422)
T KOG0264|consen 395 DNILQIWQMAE 405 (422)
T ss_pred CceEEEeeccc
Confidence 99999998863
No 113
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.89 E-value=2.3e-22 Score=173.62 Aligned_cols=219 Identities=19% Similarity=0.292 Sum_probs=169.1
Q ss_pred EEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc---eeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccC
Q 014003 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ---SASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIES 261 (432)
Q Consensus 185 ~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 261 (432)
...+..|++++.+.+|++||.+++|||.|..|+|.|++..- ....+..+.. +..-
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~----------------------qa~h 162 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDT----------------------QARH 162 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCc----------------------ccCC
Confidence 45678899999999999999999999999999999987321 1111100000 0000
Q ss_pred CceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCe
Q 014003 262 SAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNT 337 (432)
Q Consensus 262 ~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~ 337 (432)
.....+..|..+|.++.|+|. .|++|+.|++|++||+..... +.....-....+|.++.|+ |.+|++|..-.+
T Consensus 163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~sa---KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~ 239 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSA---KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPT 239 (430)
T ss_pred ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHH---HHHHHHhhccceeeeEeecCCCceEEEecCCCc
Confidence 112356789999999999998 999999999999999987542 1111222346789999997 999999999999
Q ss_pred EEEEECCCCceEEEe---cCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEee-ccCCcceEEEeeeeCCC
Q 014003 338 IRVWDLDTLEAVMTL---NGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYT-HNEDHGVLALGGLNDPD 411 (432)
Q Consensus 338 I~vwd~~~~~~~~~~---~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~sp~ 411 (432)
+++||+++.++...- ..|.+.|+++.++ +++.+++|.||.|++||--+++++..+.. |.+. -..+..|..+
T Consensus 240 ~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs---evcSa~Ftkn 316 (430)
T KOG0640|consen 240 LRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS---EVCSAVFTKN 316 (430)
T ss_pred eeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCc---eeeeEEEccC
Confidence 999999998886554 4688899999998 78999999999999999999988877764 3332 2233445889
Q ss_pred CCcEEEEEeCCCeEEEeeCCC
Q 014003 412 GNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 412 g~~~l~sg~~Dg~I~iwdl~s 432 (432)
|+ ++++++.|..|++|++.|
T Consensus 317 ~k-yiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 317 GK-YILSSGKDSTVKLWEIST 336 (430)
T ss_pred Ce-EEeecCCcceeeeeeecC
Confidence 99 888899999999999864
No 114
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1e-19 Score=169.17 Aligned_cols=256 Identities=14% Similarity=0.124 Sum_probs=178.2
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEE-EEEeCCCcEEEEeCCCCceeEEEeCCCceeeE--
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKL-YSGSRDGTVQLWDCHTGQSASVINLGAEVGSL-- 239 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l-~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~-- 239 (432)
.+++++.|+.+++||+.++ +.+..+..|.. +.+++|+|+++.+ ++++.|+.|++||..+++....+........+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~-~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATL-EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFAL 80 (300)
T ss_pred EEEEecCCCEEEEEECCCC-ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEE
Confidence 4678899999999999877 66777776654 6789999999876 56778999999999999887776654433333
Q ss_pred EECCCEEEEE--cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCC-cEEEEECCCCCCCccccceeeec
Q 014003 240 ICEGPWVFVG--MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDG-NILVWKGIPNTQNPFQLAALLKG 314 (432)
Q Consensus 240 ~~~~~~l~~~--~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg-~i~~wd~~~~~~~~~~~~~~~~~ 314 (432)
.++++.++++ .++.+++||+++.+.+........+.++.++++ .++++..++ .+..||..+... .....
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-----~~~~~- 154 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-----VDNVL- 154 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-----EEEEE-
Confidence 3567766543 578999999998776544443445678888887 777777665 467789876532 22222
Q ss_pred cccCeEEEEEe--CCEEEE-EeCCCeEEEEECCCCceEEEecCCCC-------CcEEEEEc--CCEEE-EEeCCCcEEEE
Q 014003 315 HTRPVTCLAVG--GKRLYS-GSMDNTIRVWDLDTLEAVMTLNGHTD-------APMSLLCW--DQYLL-SCSLDNTIKVW 381 (432)
Q Consensus 315 h~~~v~~l~~~--~~~l~s-gs~dg~I~vwd~~~~~~~~~~~~~~~-------~v~~~~~~--~~~l~-s~s~dg~i~iw 381 (432)
......+++|+ ++++++ +..++.|++||+++++.+..+..+.. ....+.++ +++++ +.+.++.+.+|
T Consensus 155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 22334567775 777754 45699999999999988776653211 12345555 66644 44567789999
Q ss_pred EcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEE-EeCCCeEEEeeCCC
Q 014003 382 IMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLIC-SCNDDSVHLYELPS 432 (432)
Q Consensus 382 d~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~s-g~~Dg~I~iwdl~s 432 (432)
|+++.+...... +...+..++ |+|+|+ .|++ ++.+|.|++||+.+
T Consensus 235 d~~~~~~~~~~~-~~~~~~~~~----~~~~g~-~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 235 DAKTYEVLDYLL-VGQRVWQLA----FTPDEK-YLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred ECCCCcEEEEEE-eCCCcceEE----ECCCCC-EEEEEcCCCCeEEEEECCC
Confidence 998876654432 333344444 489999 5555 46799999999874
No 115
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=6.8e-22 Score=181.21 Aligned_cols=243 Identities=20% Similarity=0.288 Sum_probs=177.9
Q ss_pred EEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc----eeEEEeC--CCceeeEE---ECCCEEEEEcCCeEE
Q 014003 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ----SASVINL--GAEVGSLI---CEGPWVFVGMPNVVK 255 (432)
Q Consensus 185 ~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~----~~~~~~~--~~~~~~~~---~~~~~l~~~~~~~i~ 255 (432)
...+++|+..|+++++.|.|-+|+|||.|.+|++||+.... .-+.+.. ...+.++. ..+.+|+++.....+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 45688999999999999999999999999999999997432 1122221 11223333 245677788888999
Q ss_pred EEEccCCceE-------------eecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCcccccee--eecccc
Q 014003 256 AWHIESSAEF-------------SLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAAL--LKGHTR 317 (432)
Q Consensus 256 vwd~~~~~~~-------------~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~--~~~h~~ 317 (432)
++|-...+.. ...+|...+++-+|+|. .+++++.||++++||+...+.. .+++.. ..+..-
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q-~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ-LQVIKTKPAGGKRV 318 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh-eeEEeeccCCCccc
Confidence 9987655433 45689999999999998 8999999999999999876532 222222 123445
Q ss_pred CeEEEEEe--CCEEEEEeCCCeEEEEECCCCce---EEEecCCCC--CcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc
Q 014003 318 PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA---VMTLNGHTD--APMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN 388 (432)
Q Consensus 318 ~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~---~~~~~~~~~--~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~ 388 (432)
++++++|+ ++.+|+|+.||.|.+||..+... ...-..|.. .|+++.|+ |++|++-+.|+++++||++..+.
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 78889997 99999999999999999865433 333456777 79999998 89999999999999999998765
Q ss_pred eeEEe-eccCCcceEEEeeeeCCCCCcEEEEEe------CCCeEEEeeCC
Q 014003 389 LEVAY-THNEDHGVLALGGLNDPDGNPVLICSC------NDDSVHLYELP 431 (432)
Q Consensus 389 ~~~~~-~~~~~~~~~~~~~~~sp~g~~~l~sg~------~Dg~I~iwdl~ 431 (432)
..... +.... .-...++|||+.+ +|++|. ..|.+.+||-.
T Consensus 399 pL~~~tgL~t~--~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~ 445 (641)
T KOG0772|consen 399 PLNVRTGLPTP--FPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRM 445 (641)
T ss_pred chhhhcCCCcc--CCCCccccCCCce-EEEecccccCCCCCceEEEEecc
Confidence 43322 21111 1122345699999 888884 35678888754
No 116
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=3.4e-22 Score=189.44 Aligned_cols=246 Identities=17% Similarity=0.246 Sum_probs=192.5
Q ss_pred CCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccC----
Q 014003 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG---- 162 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 162 (432)
-+.+-++.+++.||+|++||+|..-|++||+++...... ..+..|..+..|+.+...
T Consensus 456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~-------------------~~~eAHesEilcLeyS~p~~~~ 516 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT-------------------CFMEAHESEILCLEYSFPVLTN 516 (1080)
T ss_pred cCcccceEEEEECCCcceecccCccCceEEEEehhhhhh-------------------hheecccceeEEEeecCchhhh
Confidence 345568899999999999999999999999987654431 112233346778776554
Q ss_pred -ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCC--CEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeE
Q 014003 163 -NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRS--DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSL 239 (432)
Q Consensus 163 -~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~--~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~ 239 (432)
.+++++.|+.|+|||+...+.+++++.+|...|+++.|..+| ..+++++.|+.|..--.+.......+...
T Consensus 517 kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~------ 590 (1080)
T KOG1408|consen 517 KLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRH------ 590 (1080)
T ss_pred HhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccc------
Confidence 689999999999999999999999999999999999997666 77999999998764332211111111100
Q ss_pred EECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeecccc
Q 014003 240 ICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 240 ~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
...-....++.|++.|+ ++++++.|..|++||+..+++ .+..+.-.+|.+
T Consensus 591 --------------------------t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq--~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 591 --------------------------TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ--VKSFKGSRDHEG 642 (1080)
T ss_pred --------------------------ccccccceEEEeeeCCCcceEEEEecccceEEEeccccce--eeeecccccCCC
Confidence 11223456889999998 999999999999999999875 222333345656
Q ss_pred CeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcC--CEEEEEeCCCcEEEEEcCC
Q 014003 318 PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD--QYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 318 ~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~dg~i~iwd~~~ 385 (432)
....+..+ |.|+++.+.|.++.++|.-+++++.++.||...|+.+.|.+ +.|++++.||.|.||.+..
T Consensus 643 ~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 643 DLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 66666665 99999999999999999999999999999999999999994 7899999999999998863
No 117
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=3.6e-21 Score=180.37 Aligned_cols=139 Identities=24% Similarity=0.292 Sum_probs=108.9
Q ss_pred ECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCC-------ceEEEecCCCC
Q 014003 288 AQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTL-------EAVMTLNGHTD 357 (432)
Q Consensus 288 ~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~-------~~~~~~~~~~~ 357 (432)
+..|.|-||+++.....+.-.+..+. ....|+.+.|+ ...|++++.||.|++|-+..+ ++...+.+|..
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 33455666665543321111111221 23467888886 788999999999999998754 45677889999
Q ss_pred CcEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 358 APMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 358 ~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.|+++.|+ .+.|++++.|.+|++||+.+.+....+.+|...+-.++| ||+|+ .+++.+.||+|++|+-++
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AW----SpdGr-~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAW----SPDGR-RIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEE----CCCCc-ceeeeecCceEEEeCCCC
Confidence 99999999 589999999999999999999999999999998866666 99999 999999999999998653
No 118
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=4.1e-21 Score=185.30 Aligned_cols=313 Identities=18% Similarity=0.238 Sum_probs=233.4
Q ss_pred CCCCCCCCCCCCcee-cCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCC
Q 014003 90 KKSPPSYNCPKNNVR-VSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGD 168 (432)
Q Consensus 90 ~~~v~~~~~s~~g~~-las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 168 (432)
.+.|+++.|.-||.. +|+|+..|.+-+||++...........+ -+ .....-+.+..+.+++++
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah---~~-------------sv~~~~fl~~epVl~ta~ 307 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH---YG-------------SVTGATFLPGEPVLVTAG 307 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc---cC-------------CcccceecCCCceEeecc
Confidence 478999999999887 7888888999999998866532211110 01 112333445566899999
Q ss_pred CCCeEEEEeCCC--C-cEEEEEEecccCcEEEEEec-CCCCEEEEEeCCCcEEEEeCCCC-------c--------ee--
Q 014003 169 ECRFWHSWFCGE--G-FTMLAKLEGHKKAVSGIALP-LRSDKLYSGSRDGTVQLWDCHTG-------Q--------SA-- 227 (432)
Q Consensus 169 ~d~~i~vw~~~~--~-~~~~~~l~~H~~~V~~l~~~-~~~~~l~s~s~Dg~v~iWd~~~~-------~--------~~-- 227 (432)
.|..+++|=.++ + .+.+..-.||..+-.+|.|. .+|..+.+++.|++.+.+++... + .+
T Consensus 308 ~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~ 387 (910)
T KOG1539|consen 308 ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNV 387 (910)
T ss_pred CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccc
Confidence 999988886543 2 34555557999999999996 78899999999999888875321 0 00
Q ss_pred -----------EEE--------------------------------------eCC------Cce--eeEEECCCEEEEE-
Q 014003 228 -----------SVI--------------------------------------NLG------AEV--GSLICEGPWVFVG- 249 (432)
Q Consensus 228 -----------~~~--------------------------------------~~~------~~~--~~~~~~~~~l~~~- 249 (432)
..+ ... ..+ .++.+.|++.+.|
T Consensus 388 ~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~ 467 (910)
T KOG1539|consen 388 FSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY 467 (910)
T ss_pred cchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec
Confidence 000 000 001 1222355666655
Q ss_pred cCCeEEEEEccCCceEee----cCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEE
Q 014003 250 MPNVVKAWHIESSAEFSL----DGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLA 323 (432)
Q Consensus 250 ~~~~i~vwd~~~~~~~~~----~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~ 323 (432)
..|.|-+++++++..... ..|.++|.+++.+.. .+++++.+|-+.+||..... ++..+. -..++.++.
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-----l~~~l~-l~~~~~~iv 541 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-----LKKSLR-LGSSITGIV 541 (910)
T ss_pred cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-----eeeeec-cCCCcceee
Confidence 688999999999876543 478999999999876 89999999999999998764 334443 245567777
Q ss_pred Ee--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCc
Q 014003 324 VG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDH 399 (432)
Q Consensus 324 ~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 399 (432)
.+ ...++.+..|-.|+++|..+.+.++.|.+|.+.++++.|+ |+.|++++.|++|++||+.++..+-.+.... +.
T Consensus 542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~-~~ 620 (910)
T KOG1539|consen 542 YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDS-PC 620 (910)
T ss_pred eeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCC-cc
Confidence 76 7788999999999999999999999999999999999999 7999999999999999999998877665432 23
Q ss_pred ceEEEeeeeCCCCCcEEEEEeCC-CeEEEeeC
Q 014003 400 GVLALGGLNDPDGNPVLICSCND-DSVHLYEL 430 (432)
Q Consensus 400 ~~~~~~~~~sp~g~~~l~sg~~D-g~I~iwdl 430 (432)
..+. ++|+|. +||+...| .-|++|--
T Consensus 621 ~sls----~SPngD-~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 621 TSLS----FSPNGD-FLATVHVDQNGIYLWSN 647 (910)
T ss_pred eeeE----ECCCCC-EEEEEEecCceEEEEEc
Confidence 3444 499999 89998887 67999963
No 119
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=9.6e-21 Score=160.52 Aligned_cols=198 Identities=19% Similarity=0.331 Sum_probs=169.7
Q ss_pred EEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEe
Q 014003 187 KLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFS 266 (432)
Q Consensus 187 ~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~ 266 (432)
.++||+.+++.+.++.+|.+|+|++.|.+..+|-..+|+.+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty------------------------------------ 48 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY------------------------------------ 48 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee------------------------------------
Confidence 37899999999999999999999999999999999888888765
Q ss_pred ecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeC-----CCe
Q 014003 267 LDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM-----DNT 337 (432)
Q Consensus 267 ~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~-----dg~ 337 (432)
.+|.+.|+++.++.+ .+++|+.|.++++||+.+++. +..++ ...+|..+.|+ |++++..+. .+.
T Consensus 49 -~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~-----la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~ 121 (327)
T KOG0643|consen 49 -DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ-----LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCF 121 (327)
T ss_pred -cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE-----EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceE
Confidence 689999999998877 999999999999999999864 55555 45678888887 666665543 357
Q ss_pred EEEEECC-------CCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc-eeEEeeccCCcceEEEeee
Q 014003 338 IRVWDLD-------TLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN-LEVAYTHNEDHGVLALGGL 407 (432)
Q Consensus 338 I~vwd~~-------~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~ 407 (432)
|.++|++ ..++...+..+...++...|. +++|++|..||.|.+||++++.. +.....|...++.+.+
T Consensus 122 v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~--- 198 (327)
T KOG0643|consen 122 VSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQF--- 198 (327)
T ss_pred EEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccc---
Confidence 9999998 556788888888888888887 89999999999999999999754 4444668888888877
Q ss_pred eCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 408 NDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 408 ~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+||.. ++++|+.|.+-++||..+
T Consensus 199 -s~d~T-~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 199 -SRDRT-YFITGSKDTTAKLVDVRT 221 (327)
T ss_pred -cCCcc-eEEecccCccceeeeccc
Confidence 89988 999999999999999864
No 120
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=7.1e-23 Score=194.51 Aligned_cols=214 Identities=23% Similarity=0.404 Sum_probs=185.6
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI 240 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~ 240 (432)
...+++|+.|-.+.+|.+... ..+..|.+|+.+|.++.|++...+|++|+.||+|++||++.++.++++
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp-~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtL---------- 108 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKP-NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTL---------- 108 (825)
T ss_pred ceeeccCCCceeeccccccCC-chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhh----------
Confidence 347889999999999999776 445569999999999999999999999999999999999988776644
Q ss_pred ECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccC
Q 014003 241 CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (432)
Q Consensus 241 ~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~ 318 (432)
.+|...+.++.|+|- +.+.|+.|+.+.+||++... +...+.+|...
T Consensus 109 ---------------------------tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-----c~~~~~s~~~v 156 (825)
T KOG0267|consen 109 ---------------------------TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-----CSHTYKSHTRV 156 (825)
T ss_pred ---------------------------hccccCcceeeeccceEEeccccccccceehhhhccC-----ceeeecCCcce
Confidence 678888999999998 77889999999999998643 57888899999
Q ss_pred eEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEee
Q 014003 319 VTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYT 394 (432)
Q Consensus 319 v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 394 (432)
+.++.|+ |.++++|++|.+++|||+..|+.+..|+.|.+.+.++.++ .-++++|+.|+++++||+++-+.+.....
T Consensus 157 v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~ 236 (825)
T KOG0267|consen 157 VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP 236 (825)
T ss_pred eEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC
Confidence 9999997 8899999999999999999999999999999999999988 45788999999999999998776666655
Q ss_pred ccCCcceEEEeeeeCCCCCcEEEEEeCC
Q 014003 395 HNEDHGVLALGGLNDPDGNPVLICSCND 422 (432)
Q Consensus 395 ~~~~~~~~~~~~~~sp~g~~~l~sg~~D 422 (432)
....+.+..| +|+++ .+++|..+
T Consensus 237 ~~~~v~~~~f----n~~~~-~~~~G~q~ 259 (825)
T KOG0267|consen 237 ETDGVRSLAF----NPDGK-IVLSGEQI 259 (825)
T ss_pred ccCCceeeee----cCCce-eeecCchh
Confidence 5666666666 89999 78877544
No 121
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.1e-21 Score=187.71 Aligned_cols=222 Identities=19% Similarity=0.277 Sum_probs=177.3
Q ss_pred ccCceeeCCCCCeEEEEeCCC--CcEEEEEEecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCce
Q 014003 160 LSGNCVKGDECRFWHSWFCGE--GFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV 236 (432)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~--~~~~~~~l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~ 236 (432)
....+++++..|.|.+||+.. ..+.+..|..|+..|+++.|++ ...+|+|||.||+|++||++..+...++
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~------ 172 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF------ 172 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc------
Confidence 445789999999999999976 3466778899999999999976 5688999999999999999877665544
Q ss_pred eeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeee
Q 014003 237 GSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLK 313 (432)
Q Consensus 237 ~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~ 313 (432)
.+....|..+.|+|. .++++.+.|.+++||++... +....+.
T Consensus 173 -------------------------------~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~----r~~~k~~ 217 (839)
T KOG0269|consen 173 -------------------------------RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD----RCEKKLT 217 (839)
T ss_pred -------------------------------cccchhhhceeeccCCCceEEEecCCceEEEeeccCch----hHHHHhh
Confidence 345567778888775 89999999999999999875 4667788
Q ss_pred ccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecC-CCCCcEEEEEc---CCEEEEEeC--CCcEEEEEcCC
Q 014003 314 GHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNG-HTDAPMSLLCW---DQYLLSCSL--DNTIKVWIMTE 385 (432)
Q Consensus 314 ~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~-~~~~v~~~~~~---~~~l~s~s~--dg~i~iwd~~~ 385 (432)
+|.++|.|+.|+ +.+||+|+.|+.|+|||+.+.+......- ...++.++.|- ...|++++. |-.|+|||++.
T Consensus 218 AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 218 AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred cccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 999999999997 88999999999999999987655333322 34567788887 356777764 77899999988
Q ss_pred CCcee-EEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEE
Q 014003 386 EGNLE-VAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVH 426 (432)
Q Consensus 386 ~~~~~-~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~ 426 (432)
+-.+. .+..|...++.++|. +.|-. .+.+++.||+|.
T Consensus 298 PYIP~~t~~eH~~~vt~i~W~---~~d~~-~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 298 PYIPYATFLEHTDSVTGIAWD---SGDRI-NLWSCSKDGTVL 335 (839)
T ss_pred ccccceeeeccCccccceecc---CCCce-eeEeecCccHHH
Confidence 76544 455677777777774 33444 889999999875
No 122
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.9e-20 Score=155.06 Aligned_cols=247 Identities=19% Similarity=0.259 Sum_probs=184.4
Q ss_pred CCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeec--CCCceEEeeccC--
Q 014003 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERT--TPKNVCYHWLSG-- 162 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-- 162 (432)
+-|+++|.+.+|||+|..+|+||.|.+|++-..+...... -+....+..+ .....||.-...
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~--------------~g~dle~nmhdgtirdl~fld~~~s~ 151 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA--------------TGHDLEFNMHDGTIRDLAFLDDPESG 151 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccc--------------cCcceeeeecCCceeeeEEecCCCcC
Confidence 6799999999999999999999999999986332221100 0111111111 123445433222
Q ss_pred --cee-eCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeE
Q 014003 163 --NCV-KGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSL 239 (432)
Q Consensus 163 --~~~-~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~ 239 (432)
.++ .|..|-.|.+=|...+ +..+.+.||++.|.++- +-++-++++|+.|.+|+.||++-..++.++.....-.
T Consensus 152 ~~il~s~gagdc~iy~tdc~~g-~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~-- 227 (350)
T KOG0641|consen 152 GAILASAGAGDCKIYITDCGRG-QGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG-- 227 (350)
T ss_pred ceEEEecCCCcceEEEeecCCC-CcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCC--
Confidence 333 3445666777787777 77899999999999874 4468899999999999999999888777664221100
Q ss_pred EECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeecccc
Q 014003 240 ICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 240 ~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
.-....|.+++++|. ++++|-.|.+..+||++.+. +++.+..|..
T Consensus 228 ----------------------------glessavaav~vdpsgrll~sg~~dssc~lydirg~r-----~iq~f~phsa 274 (350)
T KOG0641|consen 228 ----------------------------GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR-----MIQRFHPHSA 274 (350)
T ss_pred ----------------------------CcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc-----eeeeeCCCcc
Confidence 012356788888887 89999999999999999874 5888999999
Q ss_pred CeEEEEEe--CCEEEEEeCCCeEEEEECCCC----ceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 014003 318 PVTCLAVG--GKRLYSGSMDNTIRVWDLDTL----EAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMT 384 (432)
Q Consensus 318 ~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~----~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~ 384 (432)
.|.|+.|+ ..++++++.|..|++-|++.. -++.....|...+..+.|. +-.+++.+.|.++.+|-+.
T Consensus 275 dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 275 DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999998 678999999999999998742 2355566788999999998 3468899999999999763
No 123
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.7e-20 Score=181.61 Aligned_cols=236 Identities=20% Similarity=0.259 Sum_probs=193.0
Q ss_pred ecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC-ceeEEEe-CCCceeeEEECCC-EEEEEcCCeEEEEEccCCceE
Q 014003 189 EGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-QSASVIN-LGAEVGSLICEGP-WVFVGMPNVVKAWHIESSAEF 265 (432)
Q Consensus 189 ~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~-~~~~~~~-~~~~~~~~~~~~~-~l~~~~~~~i~vwd~~~~~~~ 265 (432)
.+|+..-+.|+|.|+|+.|++++.||.|++|+..+. +....+. .+..+.++...+. +++++.++.|.+|.+..++.-
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 479999999999999999999999999999998776 5555665 6677778876554 555668999999999888755
Q ss_pred -eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEE
Q 014003 266 -SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRV 340 (432)
Q Consensus 266 -~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~v 340 (432)
.+.....++..++++.+ +++.|+.|-.|++.++.+... ...+.+|..+|.++.++ +++||+.+.||.|++
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~-----~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ-----EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI 164 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch-----heeecccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence 44555667888888877 999999999999999988764 67788999999999998 999999999999999
Q ss_pred EECCCCceEEEecCC--------CCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCC
Q 014003 341 WDLDTLEAVMTLNGH--------TDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDP 410 (432)
Q Consensus 341 wd~~~~~~~~~~~~~--------~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp 410 (432)
||++++.+..++.+- ...+..++|+ +..++..+.|+.|++|+....+....+........ ...+.|+|
T Consensus 165 w~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~--~~~~~wsP 242 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSK--FSDLQWSP 242 (933)
T ss_pred EEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccc--eEEEEEcC
Confidence 999999887777532 2234566677 57889999999999999998887776664332211 34456699
Q ss_pred CCCcEEEEEeCCCeEEEeeCCC
Q 014003 411 DGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 411 ~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.|+ +||+++.||.|.|||.++
T Consensus 243 nG~-YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 243 NGK-YIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCc-EEeeeccCCcEEEEeccc
Confidence 999 999999999999999874
No 124
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=8.2e-21 Score=179.82 Aligned_cols=334 Identities=19% Similarity=0.180 Sum_probs=223.4
Q ss_pred CCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCc-eEEeeccCce
Q 014003 86 VSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKN-VCYHWLSGNC 164 (432)
Q Consensus 86 ~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 164 (432)
+.||.+-|.++.|.|.+..|.|+|+|.++.||.-.+..-.+...-.+-...+ ...+.. .-+.++...+
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg-----------~a~GF~g~lw~~n~~~i 331 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGG-----------SAGGFWGGLWSPNSNVI 331 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccc-----------cccceeeEEEcCCCCEE
Confidence 4699999999999999999999999999999953222111111111000000 000011 1233344457
Q ss_pred eeCCCCCeEEEEeCCC--CcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee-EE----EeCCCcee
Q 014003 165 VKGDECRFWHSWFCGE--GFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSA-SV----INLGAEVG 237 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~--~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~-~~----~~~~~~~~ 237 (432)
++-+.-|-.+.|...+ ...+...+.||.+.|.+++|+|.|.+|+|.|.|.|-|++-.-..+.. .. ..++....
T Consensus 332 i~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~ 411 (764)
T KOG1063|consen 332 IAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLT 411 (764)
T ss_pred EEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccce
Confidence 8888889999999432 23555567899999999999999999999999999999875522211 11 12344555
Q ss_pred eEEE---CCCEEEEEcCCeEEEEEccCCceEe-------------ecCCcCCEEEEEEcCCEEEE-EECCCcE-EE-EEC
Q 014003 238 SLIC---EGPWVFVGMPNVVKAWHIESSAEFS-------------LDGPVGEVYSMVVANEMLFA-GAQDGNI-LV-WKG 298 (432)
Q Consensus 238 ~~~~---~~~~l~~~~~~~i~vwd~~~~~~~~-------------~~~~~~~v~~l~~~~~~l~~-g~~dg~i-~~-wd~ 298 (432)
++.. +-.++.++....+|+++....-... .......|..+-.+.+-+.- -..+|.. .. +..
T Consensus 412 c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et 491 (764)
T KOG1063|consen 412 CLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAET 491 (764)
T ss_pred eeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeec
Confidence 6653 3345555577889999876432110 11112233344444331110 1111111 00 110
Q ss_pred C-CCC---------------CCccccceeeeccccCeEEEEEe--CCEEEEEeCC-----CeEEEEECCCCceEEEecCC
Q 014003 299 I-PNT---------------QNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMD-----NTIRVWDLDTLEAVMTLNGH 355 (432)
Q Consensus 299 ~-~~~---------------~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d-----g~I~vwd~~~~~~~~~~~~~ 355 (432)
. ... ...+.-++.+-+|...|++++.+ ++++|+++.. ..|++|+..+...++.+.+|
T Consensus 492 ~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~H 571 (764)
T KOG1063|consen 492 PLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGH 571 (764)
T ss_pred ccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheeccc
Confidence 0 000 00123345677999999999998 9999998854 36999999999999999999
Q ss_pred CCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 356 TDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 356 ~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+-.|+.+.|+ +++|+++|.|.++.+|..........-+.....++.+.|.+.|+|++. +++++|.|++|++|..+
T Consensus 572 sLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 572 SLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-YFATASRDKKVKVWEEP 648 (764)
T ss_pred ceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc-eeEEecCCceEEEEecc
Confidence 9999999999 799999999999999998665544433444556678889999999999 79999999999999875
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=6.1e-21 Score=173.23 Aligned_cols=227 Identities=17% Similarity=0.252 Sum_probs=179.9
Q ss_pred EeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCC---------Ccee
Q 014003 157 YHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT---------GQSA 227 (432)
Q Consensus 157 ~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~---------~~~~ 227 (432)
..+.+..++.|...|.|++|.+.++ .++..+.+|-..|+++.|+-||.+|+|||.||.|.+|.+-. -+..
T Consensus 89 s~n~G~~l~ag~i~g~lYlWelssG-~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISGNLYLWELSSG-ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred cCCCceEEEeecccCcEEEEEeccc-cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 3444556777779999999999999 88888999999999999999999999999999999998632 2344
Q ss_pred EEEe-CCCceeeEEE-----CCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECC
Q 014003 228 SVIN-LGAEVGSLIC-----EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGI 299 (432)
Q Consensus 228 ~~~~-~~~~~~~~~~-----~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~ 299 (432)
..+. +.-++..+.. +.+++.++.|..+++||+..+..+........+.+++.+|. .+++|+.+|.|.+.++.
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehh
Confidence 4444 3344555552 45677788999999999999998888888889999999987 89999999999998876
Q ss_pred CCCCC-----------ccccceeeecccc--CeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEE
Q 014003 300 PNTQN-----------PFQLAALLKGHTR--PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLC 364 (432)
Q Consensus 300 ~~~~~-----------~~~~~~~~~~h~~--~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~ 364 (432)
.-... .......+.+|.+ +|+|++++ |..|++|+.||.+.|||+.+.++++++....++|+.+.+
T Consensus 248 ~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 248 KLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred cCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence 54311 1223455778888 99999986 999999999999999999999999999877888888888
Q ss_pred c---CCEEEEEeCCCcEEEEEcC
Q 014003 365 W---DQYLLSCSLDNTIKVWIMT 384 (432)
Q Consensus 365 ~---~~~l~s~s~dg~i~iwd~~ 384 (432)
. ...++.-...-.+-.|++.
T Consensus 328 ~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 328 NPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred eccccceecccccCccCCchHhh
Confidence 3 3444444444445555543
No 126
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=8.3e-21 Score=178.24 Aligned_cols=305 Identities=15% Similarity=0.222 Sum_probs=191.8
Q ss_pred CCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeecc--CceeeCCCCCeEEEE
Q 014003 99 PKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS--GNCVKGDECRFWHSW 176 (432)
Q Consensus 99 s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~vw 176 (432)
+...+.||-+-+||.|.|.|+..-.+.... .. .+....|.....-..|.. ..+++++.|.++++|
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee-~~------------lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRLEE-RQ------------LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcchhh-hh------------hcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 455667999999999999987665442110 00 011111222222233333 378999999999999
Q ss_pred eCCCCcEEEEE--EecccCcEEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCe
Q 014003 177 FCGEGFTMLAK--LEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNV 253 (432)
Q Consensus 177 ~~~~~~~~~~~--l~~H~~~V~~l~~~~~-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (432)
|+++. .++.. +.||+..|.+++|.+. ...|++|+.||.|.|||+.-...-........+ .....+.
T Consensus 128 dvk~s-~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~----------~~~~n~~ 196 (720)
T KOG0321|consen 128 DVKTS-RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRI----------YGRHNTA 196 (720)
T ss_pred eeccc-eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhh----------hccccCC
Confidence 99876 55555 8899999999999885 467899999999999998744311110000000 0000000
Q ss_pred EEEEEccCCceEeecCC----cCCEEEEEEcCC-EEEEEEC-CCcEEEEECCCCCCCc-cccc--eeeecc---ccCeEE
Q 014003 254 VKAWHIESSAEFSLDGP----VGEVYSMVVANE-MLFAGAQ-DGNILVWKGIPNTQNP-FQLA--ALLKGH---TRPVTC 321 (432)
Q Consensus 254 i~vwd~~~~~~~~~~~~----~~~v~~l~~~~~-~l~~g~~-dg~i~~wd~~~~~~~~-~~~~--~~~~~h---~~~v~~ 321 (432)
-.--.....+......+ ...|+.+.|..+ .|++++. |+.|++||++...... .++. ..+..| ...+++
T Consensus 197 ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 197 PTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence 00000000000111122 233556666655 8888777 9999999999865321 1111 222233 335667
Q ss_pred EEEe--CCEEEEEeCCCeEEEEECCCCc--eEEEecCCCCC---c-EEEEEcCCEEEEEeCCCcEEEEEcCCCCc-eeEE
Q 014003 322 LAVG--GKRLYSGSMDNTIRVWDLDTLE--AVMTLNGHTDA---P-MSLLCWDQYLLSCSLDNTIKVWIMTEEGN-LEVA 392 (432)
Q Consensus 322 l~~~--~~~l~sgs~dg~I~vwd~~~~~--~~~~~~~~~~~---v-~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~ 392 (432)
+..| |.+|++.+.|+.|+.||+.+.. ++..+.++... + ..+.+++.++++|+.|...++|.+.+.+. +..+
T Consensus 277 L~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l 356 (720)
T KOG0321|consen 277 LILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL 356 (720)
T ss_pred EEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh
Confidence 7776 8999999999999999998643 35555554332 2 33445589999999999999999988764 4455
Q ss_pred eeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 393 YTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 393 ~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.+|..++..+.+. .++... ++++++|..++||++.
T Consensus 357 ~Ght~eVt~V~w~--pS~~t~--v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 357 LGHTREVTTVRWL--PSATTP--VATCSDDFRVKIWRLS 391 (720)
T ss_pred hCcceEEEEEeec--cccCCC--ceeeccCcceEEEecc
Confidence 6787777666664 356666 5555999999999974
No 127
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=166.84 Aligned_cols=256 Identities=20% Similarity=0.309 Sum_probs=190.0
Q ss_pred CCCCCCCCCCCCCCC--ceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 87 SNHKKSPPSYNCPKN--NVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~--g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.+|.+.++.+..++- ..+.|+-++.|.++||++............
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~--------------------------------- 194 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGL--------------------------------- 194 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccc---------------------------------
Confidence 458888888877654 467888888999999976554331111100
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECC
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~ 243 (432)
.+=+ ...+++.++.+|...=.+|+|||- ...|+||..-+.|++|...++.
T Consensus 195 ---------~~~~--s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~------------------ 245 (440)
T KOG0302|consen 195 ---------EVKD--SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS------------------ 245 (440)
T ss_pred ---------cccc--cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCc------------------
Confidence 0000 223778899999999999999983 2348888888999999988765
Q ss_pred CEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeE
Q 014003 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (432)
Q Consensus 244 ~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 320 (432)
|.+.. ..+.+|...|..+.|+|. .+++++.||+|+|||++.+.. +.....+.|...|+
T Consensus 246 -------------W~vd~---~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~---~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 246 -------------WKVDQ---RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK---KAAVSTKAHNSDVN 306 (440)
T ss_pred -------------eeecC---ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc---cceeEeeccCCcee
Confidence 33222 234569999999999887 999999999999999999854 23344589999999
Q ss_pred EEEEe--CCEEEEEeCCCeEEEEECCC---CceEEEecCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEcCCCCc----
Q 014003 321 CLAVG--GKRLYSGSMDNTIRVWDLDT---LEAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGN---- 388 (432)
Q Consensus 321 ~l~~~--~~~l~sgs~dg~I~vwd~~~---~~~~~~~~~~~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~---- 388 (432)
.|+|+ ..+||+|+.||+++|||+++ ++++.+|+.|..+|+++.|+ ...|++++.|.+|.+||+.....
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 99998 45899999999999999986 56789999999999999999 57899999999999999864322
Q ss_pred ------------eeEEeeccC--CcceEEEeeeeCCCCCcEEEEEeCCCeEEEe
Q 014003 389 ------------LEVAYTHNE--DHGVLALGGLNDPDGNPVLICSCNDDSVHLY 428 (432)
Q Consensus 389 ------------~~~~~~~~~--~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iw 428 (432)
.+.++.|.. .+.-+.| ++.-..++++.+.|| +.||
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhW----H~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHW----HRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhhee----ccCCCCeEEEecccc-eeEE
Confidence 223333432 2333444 666555788888887 4444
No 128
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1e-19 Score=157.31 Aligned_cols=243 Identities=15% Similarity=0.246 Sum_probs=179.3
Q ss_pred ceEEeeccCceeeCCCCCeEEEEeCC---CCcEEEEEEecccCcEEEEEe-cC-CCCEEEEEeCCCcEEEEeCCCCceeE
Q 014003 154 NVCYHWLSGNCVKGDECRFWHSWFCG---EGFTMLAKLEGHKKAVSGIAL-PL-RSDKLYSGSRDGTVQLWDCHTGQSAS 228 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d~~i~vw~~~---~~~~~~~~l~~H~~~V~~l~~-~~-~~~~l~s~s~Dg~v~iWd~~~~~~~~ 228 (432)
.+.+.+.+..+++++.|++++|||.. .........+.|.+.|..+.| +| -|+.+|+++.|+++.||.-...+
T Consensus 18 dVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~--- 94 (361)
T KOG2445|consen 18 DVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS--- 94 (361)
T ss_pred eeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc---
Confidence 56677888899999999999999963 236777788999999999999 33 68999999999999999853111
Q ss_pred EEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC----EEEEEECCCcEEEEECCCCCC-
Q 014003 229 VINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQ- 303 (432)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~~wd~~~~~~- 303 (432)
....+ +-|. +...+......|+.+.|.|. .+++++.||.++||+......
T Consensus 95 -~~~~~--------------------~~Wv----~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL 149 (361)
T KOG2445|consen 95 -EEAHG--------------------RRWV----RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL 149 (361)
T ss_pred -ccccc--------------------ceeE----EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc
Confidence 00000 0011 11245677889999999987 899999999999999765422
Q ss_pred Cccccceeee-------ccccCeEEEEEe-----CCEEEEEeCC-----CeEEEEECCCC----ceEEEecCCCCCcEEE
Q 014003 304 NPFQLAALLK-------GHTRPVTCLAVG-----GKRLYSGSMD-----NTIRVWDLDTL----EAVMTLNGHTDAPMSL 362 (432)
Q Consensus 304 ~~~~~~~~~~-------~h~~~v~~l~~~-----~~~l~sgs~d-----g~I~vwd~~~~----~~~~~~~~~~~~v~~~ 362 (432)
..+.+..+++ .+..+..|+.|+ ..+||+|+.+ +.++||..... ..+.++.+|..+|..+
T Consensus 150 s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di 229 (361)
T KOG2445|consen 150 SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDI 229 (361)
T ss_pred ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceee
Confidence 2234444444 456677888886 5678888876 57888876543 3467788999999999
Q ss_pred EEcC------CEEEEEeCCCcEEEEEcCCCC--------------------ceeEEeeccCCcceEEEeeeeCCCCCcEE
Q 014003 363 LCWD------QYLLSCSLDNTIKVWIMTEEG--------------------NLEVAYTHNEDHGVLALGGLNDPDGNPVL 416 (432)
Q Consensus 363 ~~~~------~~l~s~s~dg~i~iwd~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~sp~g~~~l 416 (432)
+|.+ ..||+++.|| |+||.+.... .+..+..|+.++ +.+.|+-.|. +|
T Consensus 230 ~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V----Wrv~wNmtGt-iL 303 (361)
T KOG2445|consen 230 SWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV----WRVRWNMTGT-IL 303 (361)
T ss_pred eeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce----EEEEEeeeee-EE
Confidence 9983 5799999999 9999987311 122233455554 4444577888 99
Q ss_pred EEEeCCCeEEEeeC
Q 014003 417 ICSCNDDSVHLYEL 430 (432)
Q Consensus 417 ~sg~~Dg~I~iwdl 430 (432)
++.++||.||+|..
T Consensus 304 sStGdDG~VRLWka 317 (361)
T KOG2445|consen 304 SSTGDDGCVRLWKA 317 (361)
T ss_pred eecCCCceeeehhh
Confidence 99999999999974
No 129
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=9.4e-20 Score=157.07 Aligned_cols=236 Identities=17% Similarity=0.227 Sum_probs=175.6
Q ss_pred ecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCC-Ccee--EEEeCCCceeeEEE--CCCEEE-EEcCCeEEEEEccC
Q 014003 189 EGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHT-GQSA--SVINLGAEVGSLIC--EGPWVF-VGMPNVVKAWHIES 261 (432)
Q Consensus 189 ~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~-~~~~--~~~~~~~~~~~~~~--~~~~l~-~~~~~~i~vwd~~~ 261 (432)
..-++.|.+|+||| ...+++.+|.|++||+|+++. |... ....+..++.++.. ++..++ ++.|+.+++||+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 34578999999999 556677999999999999986 3333 23346677776664 555544 56999999999999
Q ss_pred CceEeecCCcCCEEEEEEcCC----EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCe
Q 014003 262 SAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNT 337 (432)
Q Consensus 262 ~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~ 337 (432)
++......|.++|..+.|-+. .|++|+.|.+|+.||++... ++..++ -.+.++++..-...++++..+..
T Consensus 104 ~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-----pv~t~~-LPeRvYa~Dv~~pm~vVata~r~ 177 (347)
T KOG0647|consen 104 GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-----PVATLQ-LPERVYAADVLYPMAVVATAERH 177 (347)
T ss_pred CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC-----eeeeee-ccceeeehhccCceeEEEecCCc
Confidence 999999999999999999876 67999999999999999764 355554 34667777777889999999999
Q ss_pred EEEEECCCCceEEEec--CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCC--CceeEEeeccCCc--c--eEE-Eee
Q 014003 338 IRVWDLDTLEAVMTLN--GHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEE--GNLEVAYTHNEDH--G--VLA-LGG 406 (432)
Q Consensus 338 I~vwd~~~~~~~~~~~--~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~--~--~~~-~~~ 406 (432)
|.+|+++++....... .-.-.+.++++. .+..+.|+-+|.+.|..+..+ +.-..+.-|.... . ..+ -..
T Consensus 178 i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 178 IAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred EEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence 9999998764432221 122346777766 456699999999999999876 3334444454211 1 111 123
Q ss_pred eeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 407 LNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 407 ~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.|+|.-. .|++++.||++.+||-.
T Consensus 258 ~FhP~hg-tlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 258 AFHPVHG-TLVTAGSDGTFSFWDKD 281 (347)
T ss_pred Eeecccc-eEEEecCCceEEEecch
Confidence 4588766 89999999999999953
No 130
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.9e-19 Score=169.11 Aligned_cols=233 Identities=20% Similarity=0.328 Sum_probs=187.5
Q ss_pred CceEEee--ccCceeeCCCCCeEEEEeCCCCcEEEEEEeccc-CcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 014003 153 KNVCYHW--LSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHK-KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV 229 (432)
Q Consensus 153 ~~~~~~~--~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~-~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~ 229 (432)
..+|+.+ ....++.+..+|.|.+|++..++-....+.+++ ..|.+|+|+ ++..|+|.+.+|+|..||+.+++....
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~ 105 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYN 105 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEE
Confidence 3444444 445789999999999999999888888888875 689999998 566799999999999999999887765
Q ss_pred EeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccc
Q 014003 230 INLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQ 307 (432)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~ 307 (432)
+ ....+.|++++.+|. .+++|++||.+..++...+. .+
T Consensus 106 ~-------------------------------------d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~---I~ 145 (691)
T KOG2048|consen 106 I-------------------------------------DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK---IT 145 (691)
T ss_pred e-------------------------------------cCCCcceeEEEeCCccceEEeecCCceEEEEecCCce---EE
Confidence 4 455678899999887 89999999977777776664 33
Q ss_pred cceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEec----CC----CCCcEEEEEc-CCEEEEEeCCC
Q 014003 308 LAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN----GH----TDAPMSLLCW-DQYLLSCSLDN 376 (432)
Q Consensus 308 ~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~----~~----~~~v~~~~~~-~~~l~s~s~dg 376 (432)
....+.-.++.|.+++|+ +..+++|+.||.|++||..++..++... +- ..-|.++.+- +..|++|.+-|
T Consensus 146 ~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G 225 (691)
T KOG2048|consen 146 YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAG 225 (691)
T ss_pred EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCc
Confidence 444555567899999998 7779999999999999999988776221 11 1225555555 78999999999
Q ss_pred cEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 377 TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 377 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+|.+||...+..++....|...+.+++. .+++. .+++++.|+.|--|...
T Consensus 226 ~V~FWd~~~gTLiqS~~~h~adVl~Lav----~~~~d-~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 226 TVTFWDSIFGTLIQSHSCHDADVLALAV----ADNED-RVFSAGVDPKIIQYSLT 275 (691)
T ss_pred eEEEEcccCcchhhhhhhhhcceeEEEE----cCCCC-eEEEccCCCceEEEEec
Confidence 9999999999999999999999888888 57767 88899999998877653
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.3e-19 Score=171.44 Aligned_cols=285 Identities=16% Similarity=0.168 Sum_probs=213.7
Q ss_pred CCccccccCCCCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCC
Q 014003 73 PCRFAHTESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP 152 (432)
Q Consensus 73 p~~~l~~~~~~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (432)
-|+|.... | .+|.++|++.+...||.+..||+|.|||+...=. ...++.....
T Consensus 17 rcrf~d~~-P--------s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~------------------~~~vi~g~~d 69 (691)
T KOG2048|consen 17 RCRFVDYK-P--------SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF------------------LEPVIHGPED 69 (691)
T ss_pred EEEEEeee-c--------cceEEEEEeccCCceeeeccCCcEEEEccCCCce------------------eeEEEecCCC
Confidence 47777643 2 2368999999999999999999999998665322 1122222111
Q ss_pred -CceEEeec-cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEE
Q 014003 153 -KNVCYHWL-SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI 230 (432)
Q Consensus 153 -~~~~~~~~-~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~ 230 (432)
....+.|. +..+.+.+-+|.|.-||+.+. ++...++.-.++|++++.+|.+..++.|+.||.+...+...++.....
T Consensus 70 rsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l-k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r 148 (691)
T KOG2048|consen 70 RSIESLAWAEGGRLFSSGLSGSITEWDLHTL-KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR 148 (691)
T ss_pred CceeeEEEccCCeEEeecCCceEEEEecccC-ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe
Confidence 12334455 669999999999999999988 777788888999999999999999999999997777777666544322
Q ss_pred eCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCcccc
Q 014003 231 NLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQL 308 (432)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~ 308 (432)
.+....+.+.++.|+++ .++.|+.||.|++||...+.... ..
T Consensus 149 -----------------------------------~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~-~~ 192 (691)
T KOG2048|consen 149 -----------------------------------SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH-II 192 (691)
T ss_pred -----------------------------------ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE-Ee
Confidence 12334688999999999 69999999999999998876421 00
Q ss_pred ceeeec----cccCeEEEEEe-CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEE
Q 014003 309 AALLKG----HTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVW 381 (432)
Q Consensus 309 ~~~~~~----h~~~v~~l~~~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iw 381 (432)
...+.. ..--|.++.+= ...+++|.+-|+|.+||...+.+++.+..|.+.|.+++.. ++++++++.|+.|..+
T Consensus 193 ~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 193 TMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQY 272 (691)
T ss_pred eecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEE
Confidence 111111 12234455543 8899999999999999999999999999999999999988 5899999999999999
Q ss_pred EcCCCCcee----EEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEe
Q 014003 382 IMTEEGNLE----VAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLY 428 (432)
Q Consensus 382 d~~~~~~~~----~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iw 428 (432)
...+.+.-. ....|...+..++. .++ .+++|+.|..+.+=
T Consensus 273 ~~~~~~~~wv~~~~r~~h~hdvrs~av----~~~---~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 273 SLTTNKSEWVINSRRDLHAHDVRSMAV----IEN---ALISGGRDFTLAIC 316 (691)
T ss_pred EecCCccceeeeccccCCcccceeeee----ecc---eEEecceeeEEEEc
Confidence 887765421 22346666666666 233 78899999888763
No 132
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=2e-20 Score=162.90 Aligned_cols=298 Identities=15% Similarity=0.171 Sum_probs=203.8
Q ss_pred CCCCCCCCCCCCCCCC-----CceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEee
Q 014003 85 PVSNHKKSPPSYNCPK-----NNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHW 159 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~-----~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (432)
-.++|+.+|..++|.+ .-..+|+.| ...+.+++.....-. ..+....++........- .-|+.-
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~i------r~lq~y~D~d~~Esfytc----sw~yd~ 101 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGI------RLLQSYADEDHDESFYTC----SWSYDS 101 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccce------eeeeeccCCCCCcceEEE----EEEecC
Confidence 5578999999999952 223355555 456666654443310 000000010000000000 111111
Q ss_pred c--cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeEEEeCCCce
Q 014003 160 L--SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV 236 (432)
Q Consensus 160 ~--~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~ 236 (432)
. .+.++.|+.-|.|+|.|+.++ +....+.+|...|+.|.+.|+ .++++++|.|.+||+||+++..++..+..
T Consensus 102 ~~~~p~la~~G~~GvIrVid~~~~-~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG---- 176 (385)
T KOG1034|consen 102 NTGNPFLAAGGYLGVIRVIDVVSG-QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG---- 176 (385)
T ss_pred CCCCeeEEeecceeEEEEEecchh-hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc----
Confidence 2 447888999999999999888 788899999999999999886 48999999999999999999999988752
Q ss_pred eeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCC-----------
Q 014003 237 GSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQ----------- 303 (432)
Q Consensus 237 ~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~----------- 303 (432)
..+|...|.++.|+.+ ++++++.|.+|.+|++...+-
T Consensus 177 ------------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~ 226 (385)
T KOG1034|consen 177 ------------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYS 226 (385)
T ss_pred ------------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence 3689999999999988 999999999999999873210
Q ss_pred -----C-------ccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEEC-CCCce-------------EEEecCCCC
Q 014003 304 -----N-------PFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDL-DTLEA-------------VMTLNGHTD 357 (432)
Q Consensus 304 -----~-------~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~-~~~~~-------------~~~~~~~~~ 357 (432)
. .+....+-..|...|.|+.|-|+++++=+-++.|..|.. +-.+. +..+.-...
T Consensus 227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c 306 (385)
T KOG1034|consen 227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC 306 (385)
T ss_pred CCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc
Confidence 0 011111334678888888888999999999999999987 22222 223333333
Q ss_pred CcEEEEEc----CCEEEEEeCCCcEEEEEcCCCCceeE-EeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 358 APMSLLCW----DQYLLSCSLDNTIKVWIMTEEGNLEV-AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 358 ~v~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
.+.-+.+. .+.||.|...|.|.+||++..++... ...|... ....-..+++.||. +|+..++|++|.-||-
T Consensus 307 ~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~-~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 307 DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKS-GSTVRQTSFSRDGS-ILVLVCDDGTVWRWDR 382 (385)
T ss_pred ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccc-cceeeeeeecccCc-EEEEEeCCCcEEEEEe
Confidence 34444433 68999999999999999998776422 2222222 11222233488999 8888889999999985
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.85 E-value=3.8e-18 Score=158.65 Aligned_cols=275 Identities=14% Similarity=0.081 Sum_probs=184.5
Q ss_pred eecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce-eeCCCCCeEEEEeCCCC
Q 014003 103 VRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC-VKGDECRFWHSWFCGEG 181 (432)
Q Consensus 103 ~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~d~~i~vw~~~~~ 181 (432)
..++|++.||.+++|++.++... .... .......+++.+.+..+ ++++.++.|++||..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~----~~~~--------------~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~ 63 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVT----RTFP--------------VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATG 63 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceE----EEEE--------------CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 46788889999999987654320 0000 00112345566666654 67788999999999877
Q ss_pred cEEEEEEecccCcEEEEEecCCCCEEEEE-eCCCcEEEEeCCCCceeEEEeCCCceeeE--EECCCEEEEEcC--CeEEE
Q 014003 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSG-SRDGTVQLWDCHTGQSASVINLGAEVGSL--ICEGPWVFVGMP--NVVKA 256 (432)
Q Consensus 182 ~~~~~~l~~H~~~V~~l~~~~~~~~l~s~-s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~--~~i~v 256 (432)
+....+..+.. +..++|+|+++.++++ +.|+.|++||+.+++.+..+........+ .+++.+++++.. ..+..
T Consensus 64 -~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~ 141 (300)
T TIGR03866 64 -EVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHF 141 (300)
T ss_pred -cEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEE
Confidence 55566665544 5678999999977654 56899999999998888777654433333 357888776643 35777
Q ss_pred EEccCCceEeecCCcCCEEEEEEcCC--EEE-EEECCCcEEEEECCCCCCCccccceeeecc-----cc--CeEEEEEe-
Q 014003 257 WHIESSAEFSLDGPVGEVYSMVVANE--MLF-AGAQDGNILVWKGIPNTQNPFQLAALLKGH-----TR--PVTCLAVG- 325 (432)
Q Consensus 257 wd~~~~~~~~~~~~~~~v~~l~~~~~--~l~-~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h-----~~--~v~~l~~~- 325 (432)
||.+++..............+.++++ .++ ++..++.|++||+.+++. ...+..+ .. ....++++
T Consensus 142 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~s~ 216 (300)
T TIGR03866 142 IDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV-----IKKITFEIPGVHPEAVQPVGIKLTK 216 (300)
T ss_pred EeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee-----eeeeeecccccccccCCccceEECC
Confidence 89888766543323344567788877 554 445699999999987642 2222211 11 12346665
Q ss_pred -CCEEEE-EeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEE-eCCCcEEEEEcCCCCceeEEeeccCCcc
Q 014003 326 -GKRLYS-GSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSC-SLDNTIKVWIMTEEGNLEVAYTHNEDHG 400 (432)
Q Consensus 326 -~~~l~s-gs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 400 (432)
++++++ ...++.|.+||+++++.+..+. +...+.++.++ +++|+++ +.++.|.+||+++.+.+..+..... ..
T Consensus 217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~ 294 (300)
T TIGR03866 217 DGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRL-PW 294 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccc-cc
Confidence 776544 4557789999999998877654 34467788886 6788776 5689999999999888877765433 24
Q ss_pred eEEE
Q 014003 401 VLAL 404 (432)
Q Consensus 401 ~~~~ 404 (432)
.+++
T Consensus 295 ~~~~ 298 (300)
T TIGR03866 295 GVVV 298 (300)
T ss_pred eeEe
Confidence 4443
No 134
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.4e-20 Score=175.56 Aligned_cols=300 Identities=17% Similarity=0.154 Sum_probs=205.2
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCC-----CCCcccccCCCCCC------CCCc-eeeeecCC
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTV-----PNKSSLDCSTGSDD------SGSK-RTLERTTP 152 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~-----~~~~~~~~~~~~~~------~~~~-~~~~~~~~ 152 (432)
.+.||++.|.++...|.|.+|||||.||++|||.+.++.... ....++........ .+.. -++....+
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence 349999999999999999999999999999999988876421 11111111111110 0000 00000000
Q ss_pred CceEEeeccCceee----CCCCCeEEEEeCCC---CcEEEEEEecccCcEEEEEecCCCCEEEEEeCC---CcEEEEeCC
Q 014003 153 KNVCYHWLSGNCVK----GDECRFWHSWFCGE---GFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD---GTVQLWDCH 222 (432)
Q Consensus 153 ~~~~~~~~~~~~~~----g~~d~~i~vw~~~~---~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~D---g~v~iWd~~ 222 (432)
+.+-..+....+++ ...+..+-.|.-.. ...-+...-.|...|..+.|+..|.||++...+ ..|.|.++.
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS 554 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS 554 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence 11111111112222 24566778887642 222244555799999999999999999998765 346666665
Q ss_pred CCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCC
Q 014003 223 TGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIP 300 (432)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~ 300 (432)
...... .+....+.+.++.|+|. ++++++ ...|++||+..
T Consensus 555 K~~sQ~-------------------------------------PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~k 596 (733)
T KOG0650|consen 555 KRKSQS-------------------------------------PFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSK 596 (733)
T ss_pred cccccC-------------------------------------chhhcCCceeEEEecCCCceEEEEe-ccceEEEehhH
Confidence 443221 23455678889999998 666665 46899999987
Q ss_pred CCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCC-ceEEEecCCCCCcEEEEEcC--CEEEEEeCC
Q 014003 301 NTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCWD--QYLLSCSLD 375 (432)
Q Consensus 301 ~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~-~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d 375 (432)
. .++..+......|..|+++ |..|+.|+.|+.+..+|+.-. ++.+++..|...+.+++++. .++++|+.|
T Consensus 597 q-----elvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD 671 (733)
T KOG0650|consen 597 Q-----ELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD 671 (733)
T ss_pred H-----HHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence 4 3566666667788888887 899999999999999999754 67889999999999999995 689999999
Q ss_pred CcEEEEEcC------CCC---ceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEe
Q 014003 376 NTIKVWIMT------EEG---NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLY 428 (432)
Q Consensus 376 g~i~iwd~~------~~~---~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iw 428 (432)
|++.|+.-. ..- ++..+.+|......-.+...|+|.-. +|++++.||+|++|
T Consensus 672 gtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp-WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 672 GTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP-WLFSAGADGTIRLF 732 (733)
T ss_pred CcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCc-eEEecCCCceEEee
Confidence 999998532 221 34455566554333345566899877 89999999999998
No 135
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=6.4e-21 Score=167.90 Aligned_cols=235 Identities=16% Similarity=0.253 Sum_probs=180.6
Q ss_pred EEEEEEecccCcEEEEEecCCC-CEEEEEeCCCcEEEEeCCCCceeEEEeCCC-ceeeEEE-CCCEEEEEcCCeEEEEEc
Q 014003 183 TMLAKLEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSASVINLGA-EVGSLIC-EGPWVFVGMPNVVKAWHI 259 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~~i~vwd~ 259 (432)
..+..|.||.+.|.+++=+|.. ..++||+.||.|++||+.+..+...+..+. .+..+.. .+.++.+|.|++|+.|.+
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKI 136 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeec
Confidence 4466789999999999998877 789999999999999999999999998655 6666663 477888999999999998
Q ss_pred cCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe---CCEEEEEeC
Q 014003 260 ESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSM 334 (432)
Q Consensus 260 ~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~ 334 (432)
+... .........+..+.-+.. .++++++ .|.|||..... ++..+.-..+.|.++.|+ ...|+++.+
T Consensus 137 ~~~p-~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~-----Pv~smswG~Dti~svkfNpvETsILas~~s 208 (433)
T KOG0268|consen 137 DGPP-LHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDN-----PVSSMSWGADSISSVKFNPVETSILASCAS 208 (433)
T ss_pred cCCc-ceeeeccccccccccccccccccccCc--eeeecccccCC-----ccceeecCCCceeEEecCCCcchheeeecc
Confidence 7742 222222334444444332 6666654 58999987754 577787778899999998 677888989
Q ss_pred CCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCC-ceeEEeeccCCcceEEEeeeeCCC
Q 014003 335 DNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEG-NLEVAYTHNEDHGVLALGGLNDPD 411 (432)
Q Consensus 335 dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~sp~ 411 (432)
|+.|.+||+++..+++.+. -...-..++|+ .-.+++|++|..++.||++... ++.....|...+ +.+.|||.
T Consensus 209 DrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV----~dVdfspt 283 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV----MDVDFSPT 283 (433)
T ss_pred CCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeE----EEeccCCC
Confidence 9999999999999987764 22334566676 4578899999999999998754 344444555444 44555999
Q ss_pred CCcEEEEEeCCCeEEEeeCC
Q 014003 412 GNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 412 g~~~l~sg~~Dg~I~iwdl~ 431 (432)
|+ -+++||.|.+||||.+.
T Consensus 284 G~-EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 284 GQ-EFVSGSYDKSIRIFPVN 302 (433)
T ss_pred cc-hhccccccceEEEeecC
Confidence 99 79999999999999864
No 136
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.7e-20 Score=168.12 Aligned_cols=268 Identities=18% Similarity=0.224 Sum_probs=184.4
Q ss_pred CCccccccCCCCCCCCCCCCCCCCCC-------CCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCC----C
Q 014003 73 PCRFAHTESQTLPVSNHKKSPPSYNC-------PKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDD----S 141 (432)
Q Consensus 73 p~~~l~~~~~~~~~~gh~~~v~~~~~-------s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~----~ 141 (432)
|.-|+|-....+.+ +.|++| ...|.|+|-|..|-.|.|||+.=-....|....= +..+.. .
T Consensus 162 ~nlYvHHD~ilpaf------PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LG--s~~sk~~~k~~ 233 (463)
T KOG0270|consen 162 ENLYVHHDFILPAF------PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLG--SKASKKKKKKG 233 (463)
T ss_pred cceeEecceeccCc------chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeec--hhhhhhhhhhc
Confidence 66777765544421 155555 2357799999999999999876533322221110 000000 0
Q ss_pred CCceeeeecCCCceEEeecc---CceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecC-CCCEEEEEeCCCcEE
Q 014003 142 GSKRTLERTTPKNVCYHWLS---GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQ 217 (432)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~---~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~ 217 (432)
........|......+.|+. ..+++|+.|.+|.+||++++ ++..++..|.+.|.+++|+| ....|++|+.|++|.
T Consensus 234 k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g-~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~ 312 (463)
T KOG0270|consen 234 KRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG-KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVA 312 (463)
T ss_pred ccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC-CcceehhhcCCceeEEEecCCCceEEEeccccceEE
Confidence 00011112332233334432 37999999999999999999 88889999999999999977 568999999999999
Q ss_pred EEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEE
Q 014003 218 LWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNIL 294 (432)
Q Consensus 218 iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~ 294 (432)
+.|++....... -| ...+.|..++|++. .+++++.||.|+
T Consensus 313 l~D~R~~~~s~~--------------------------~w-----------k~~g~VEkv~w~~~se~~f~~~tddG~v~ 355 (463)
T KOG0270|consen 313 LKDCRDPSNSGK--------------------------EW-----------KFDGEVEKVAWDPHSENSFFVSTDDGTVY 355 (463)
T ss_pred eeeccCccccCc--------------------------eE-----------EeccceEEEEecCCCceeEEEecCCceEE
Confidence 999984211110 01 12456667777765 889999999999
Q ss_pred EEECCCCCCCccccceeeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCCC---CcEEEEEc---
Q 014003 295 VWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD---APMSLLCW--- 365 (432)
Q Consensus 295 ~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~---~v~~~~~~--- 365 (432)
-+|++... +++.+++.|..+|.+|+++ .+.+++++.|+.|++|++..-.+.... .|.- ...|.++.
T Consensus 356 ~~D~R~~~----~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~-~~~~~~~rl~c~~~~~~~ 430 (463)
T KOG0270|consen 356 YFDIRNPG----KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK-EHSFKLGRLHCFALDPDV 430 (463)
T ss_pred eeecCCCC----CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc-cccccccceeecccCCCc
Confidence 99999874 5789999999999999997 778999999999999998754432211 1222 12333333
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeE
Q 014003 366 DQYLLSCSLDNTIKVWIMTEEGNLEV 391 (432)
Q Consensus 366 ~~~l~s~s~dg~i~iwd~~~~~~~~~ 391 (432)
.-.++.|+..+.++|||+.+...+..
T Consensus 431 a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 431 AFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred ceEEEecCccceEEEeecccChhHHH
Confidence 35788888888999999988765543
No 137
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=7.4e-20 Score=162.04 Aligned_cols=216 Identities=21% Similarity=0.317 Sum_probs=168.4
Q ss_pred EEecccCcEEEEEecCCC--CEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCce
Q 014003 187 KLEGHKKAVSGIALPLRS--DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAE 264 (432)
Q Consensus 187 ~l~~H~~~V~~l~~~~~~--~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~ 264 (432)
..-+|.+.|..+.-++-+ .+.++=+..|.|.|||+... +..+. +-.+.+-+.+...+
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~--l~~l~-------------------~~~~~~~~s~~~Pl 204 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPH--LNALS-------------------EPGLEVKDSEFRPL 204 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhh--hhhhc-------------------CccccccccccCce
Confidence 345788888888876654 55666678899999998532 11111 00111112333445
Q ss_pred EeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCcccc-ceeeeccccCeEEEEEe---CCEEEEEeCCCe
Q 014003 265 FSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQL-AALLKGHTRPVTCLAVG---GKRLYSGSMDNT 337 (432)
Q Consensus 265 ~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~-~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~ 337 (432)
+...+|...=++++|+|- .+++|..-+.|++|...++. ++. ...+.+|+..|-.|+|+ ...|++||.||+
T Consensus 205 ~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~---W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs 281 (440)
T KOG0302|consen 205 FTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS---WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS 281 (440)
T ss_pred EEecccCccceeeecccccccccccCccccceEeeeeccCc---eeecCccccccccchhhhccCCccCceEEeeecCce
Confidence 677899999999999995 78999999999999988864 221 23456799999999996 789999999999
Q ss_pred EEEEECCCC---ceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCC---CceeEEeeccCCcceEEEeeeeC
Q 014003 338 IRVWDLDTL---EAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEE---GNLEVAYTHNEDHGVLALGGLND 409 (432)
Q Consensus 338 I~vwd~~~~---~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~s 409 (432)
|+|||+|.+ .++.+ +.|.+.|.-++|+ -.+|++|+.||+++|||++.- +++..+..|..+++++.| +
T Consensus 282 IrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW----~ 356 (440)
T KOG0302|consen 282 IRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEW----H 356 (440)
T ss_pred EEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEe----c
Confidence 999999998 34444 8899999999999 358999999999999999864 567788899999998888 7
Q ss_pred CCCCcEEEEEeCCCeEEEeeCC
Q 014003 410 PDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 410 p~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
|.....|++++.|..|.|||+.
T Consensus 357 p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 357 PHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred cccCceEEeccCCCcEEEEEee
Confidence 8777789999999999999985
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.5e-19 Score=162.48 Aligned_cols=272 Identities=15% Similarity=0.145 Sum_probs=207.6
Q ss_pred CceEEeeccCceeeCCCCCeEEEEeCCCC-cEEEEEEecccCcEEEEEecCCCC-EEEEEeCCCcEEEEeCCCCceeEEE
Q 014003 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEG-FTMLAKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWDCHTGQSASVI 230 (432)
Q Consensus 153 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~-~~~~~~l~~H~~~V~~l~~~~~~~-~l~s~s~Dg~v~iWd~~~~~~~~~~ 230 (432)
..+-|++..+.+.+++.|+.+++|.++.. ...++.+.--..+|.+.+|.|+|. .+++++....+..||+++++..+.-
T Consensus 217 ~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~ 296 (514)
T KOG2055|consen 217 TSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK 296 (514)
T ss_pred eEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccccc
Confidence 46778899999999999999999999643 355667766789999999999998 8999999999999999998876555
Q ss_pred eCCCc------eeeEEECCCEEE-EEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCC
Q 014003 231 NLGAE------VGSLICEGPWVF-VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPN 301 (432)
Q Consensus 231 ~~~~~------~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~ 301 (432)
...+. .-.+..++++++ .|..|.|.+....+++.+......+.|..+.|+.+ .|++.+.+|.|.+||++..
T Consensus 297 ~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 297 PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN 376 (514)
T ss_pred CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc
Confidence 43221 123445666665 67899999999999998887788889999999987 8888889999999999987
Q ss_pred CCCccccceeeecccc-CeEEEE--EeCCEEEEEeCCCeEEEEECCC------CceEEEecCCCCCcEEEEEc--CCEEE
Q 014003 302 TQNPFQLAALLKGHTR-PVTCLA--VGGKRLYSGSMDNTIRVWDLDT------LEAVMTLNGHTDAPMSLLCW--DQYLL 370 (432)
Q Consensus 302 ~~~~~~~~~~~~~h~~-~v~~l~--~~~~~l~sgs~dg~I~vwd~~~------~~~~~~~~~~~~~v~~~~~~--~~~l~ 370 (432)
. +++.+..... .-++++ .++.+||+|+..|.|.|||.++ .+++.++..-...|.++.|+ .+.|+
T Consensus 377 ~-----~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA 451 (514)
T KOG2055|consen 377 S-----CLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILA 451 (514)
T ss_pred c-----eEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence 4 3444432111 123344 4599999999999999999754 56777887777889999998 56776
Q ss_pred EEe--CCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 371 SCS--LDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 371 s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.+| .+..+++-.+.+......+...+..+. ..-+..|||.|. +++.|..+|.|.+|.+.
T Consensus 452 iaS~~~knalrLVHvPS~TVFsNfP~~n~~vg-~vtc~aFSP~sG-~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 452 IASRVKKNALRLVHVPSCTVFSNFPTSNTKVG-HVTCMAFSPNSG-YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhccccceEEEeccceeeeccCCCCCCccc-ceEEEEecCCCc-eEEeecCCCceeeEeec
Confidence 666 467888888876543333333322222 223344599998 99999999999999874
No 139
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.4e-19 Score=173.99 Aligned_cols=243 Identities=17% Similarity=0.196 Sum_probs=186.4
Q ss_pred CCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceee
Q 014003 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVK 166 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (432)
.+|+.+-+.+.+.|+|.++.+.+.||.|++|+..... ..|.... .++....|+.-....+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P~ti~-----------------~~g~~v~~ia~~s~~f~~ 71 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-EEPETID-----------------ISGELVSSIACYSNHFLT 71 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-cCCchhh-----------------ccCceeEEEeecccceEE
Confidence 4577777899999999999999999999999755542 1111111 122245566666779999
Q ss_pred CCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEE
Q 014003 167 GDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWV 246 (432)
Q Consensus 167 g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (432)
|+.+++|++|...++ +.-..+.--+-++.+++|+-+|+++|.||.|-.|++-++........
T Consensus 72 ~s~~~tv~~y~fps~-~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~----------------- 133 (933)
T KOG1274|consen 72 GSEQNTVLRYKFPSG-EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV----------------- 133 (933)
T ss_pred eeccceEEEeeCCCC-CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhee-----------------
Confidence 999999999999765 32333444578899999999999999999999999999876654443
Q ss_pred EEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCc-cc-cceeeecc-ccCeEE
Q 014003 247 FVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNP-FQ-LAALLKGH-TRPVTC 321 (432)
Q Consensus 247 ~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~-~~-~~~~~~~h-~~~v~~ 321 (432)
+.+|.++|.++.++|+ +||+.+.||.|++||+.++.... +. +....... ...+..
T Consensus 134 --------------------lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~ 193 (933)
T KOG1274|consen 134 --------------------LRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTR 193 (933)
T ss_pred --------------------ecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeee
Confidence 4789999999999998 99999999999999999875310 00 00001111 344566
Q ss_pred EEEe--CCEEEEEeCCCeEEEEECCCCceEEEecC--CCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 014003 322 LAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNG--HTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 322 l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~--~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~ 385 (432)
++|+ +..++..+.|+.|++|+..+++....+.. +...+..+.|+ |.|||+++.||.|.|||+++
T Consensus 194 ~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 194 LAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 7887 67888888999999999999999888854 33446777777 89999999999999999987
No 140
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=1.3e-19 Score=170.41 Aligned_cols=232 Identities=22% Similarity=0.236 Sum_probs=168.6
Q ss_pred ceeeCCCCCeEEEEeCCCC-----cEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCcee
Q 014003 163 NCVKGDECRFWHSWFCGEG-----FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG 237 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~-----~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~ 237 (432)
.++.+.+||.|.++|.... ...+.....|...|.++.|-|....|++++.|.+++.||++++.+...-
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~------- 138 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR------- 138 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-------
Confidence 6788899999999998542 1224556789999999999998788999999999999999988766531
Q ss_pred eEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCc---------
Q 014003 238 SLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNP--------- 305 (432)
Q Consensus 238 ~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~--------- 305 (432)
...+|.+.|.+++|.+. .+++|+.||.|.|||++......
T Consensus 139 ----------------------------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~ 190 (720)
T KOG0321|consen 139 ----------------------------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIY 190 (720)
T ss_pred ----------------------------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhh
Confidence 23688899999988876 89999999999999987654110
Q ss_pred ---------c----ccceeeecccc----CeEEEEEe-CCEEEEEeC-CCeEEEEECCCCceEE--------EecCC---
Q 014003 306 ---------F----QLAALLKGHTR----PVTCLAVG-GKRLYSGSM-DNTIRVWDLDTLEAVM--------TLNGH--- 355 (432)
Q Consensus 306 ---------~----~~~~~~~~h~~----~v~~l~~~-~~~l~sgs~-dg~I~vwd~~~~~~~~--------~~~~~--- 355 (432)
. +.+...+++.. .|+.+.|. ...||+++. |+.|+|||++...... .+..|
T Consensus 191 ~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skr 270 (720)
T KOG0321|consen 191 GRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKR 270 (720)
T ss_pred ccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccc
Confidence 0 11112223333 35556664 888999888 9999999999765432 22233
Q ss_pred CCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc--eeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 356 TDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN--LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 356 ~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.-.++++..+ |.+|++.+.|+.|++|++..... +..+.++ .+..+...-..+|++. ++++|+.|...++|.+.
T Consensus 271 s~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~--~~~sf~vks~lSpd~~-~l~SgSsd~~ayiw~vs 347 (720)
T KOG0321|consen 271 SVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGK--LNSSFYVKSELSPDDC-SLLSGSSDEQAYIWVVS 347 (720)
T ss_pred eeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCc--ccceeeeeeecCCCCc-eEeccCCCcceeeeeec
Confidence 2245666665 78988888899999999987543 2222222 2233333344589999 99999999999999876
Q ss_pred C
Q 014003 432 S 432 (432)
Q Consensus 432 s 432 (432)
+
T Consensus 348 ~ 348 (720)
T KOG0321|consen 348 S 348 (720)
T ss_pred C
Confidence 3
No 141
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=5.6e-20 Score=153.98 Aligned_cols=205 Identities=20% Similarity=0.262 Sum_probs=165.1
Q ss_pred EecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEee
Q 014003 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL 267 (432)
Q Consensus 188 l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~ 267 (432)
-..|++.|.++...-.|++|+|++.|++|+|+.++....... ...+
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~l----------------------------------l~~L 52 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKL----------------------------------LAEL 52 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCcee----------------------------------eeEe
Confidence 357999999999988999999999999999999986543211 2356
Q ss_pred cCCcCCEEEEEEcC-C---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe----CCEEEEEeCCCeEE
Q 014003 268 DGPVGEVYSMVVAN-E---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG----GKRLYSGSMDNTIR 339 (432)
Q Consensus 268 ~~~~~~v~~l~~~~-~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~ 339 (432)
.+|.++|..++|.. . +|+++++||+|.+|.-.++. +........|...|++++|. |-.|++++.||.|.
T Consensus 53 ~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~---w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vs 129 (299)
T KOG1332|consen 53 TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR---WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVS 129 (299)
T ss_pred cCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc---hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEE
Confidence 89999999999964 2 99999999999999987773 66677888999999999984 78899999999999
Q ss_pred EEECCCC---ceEEEecCCCCCcEEEEEc-----C-----------CEEEEEeCCCcEEEEEcCCCCc--eeEEeeccCC
Q 014003 340 VWDLDTL---EAVMTLNGHTDAPMSLLCW-----D-----------QYLLSCSLDNTIKVWIMTEEGN--LEVAYTHNED 398 (432)
Q Consensus 340 vwd~~~~---~~~~~~~~~~~~v~~~~~~-----~-----------~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~ 398 (432)
|.+.++. ........|.-.|.++++. | +.|++|+.|..|+||+..+.+- -..+..|..-
T Consensus 130 vl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw 209 (299)
T KOG1332|consen 130 VLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW 209 (299)
T ss_pred EEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchh
Confidence 9998764 2234456788889998886 1 4699999999999999987632 2235678887
Q ss_pred cceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 399 HGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 399 ~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
+..++++.... -.+..|++++.||+|.||..
T Consensus 210 VRDVAwaP~~g-l~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 210 VRDVAWAPSVG-LPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred hhhhhhccccC-CCceeeEEecCCCcEEEEEe
Confidence 87777753321 23447999999999999964
No 142
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=5.8e-19 Score=151.70 Aligned_cols=196 Identities=23% Similarity=0.394 Sum_probs=154.4
Q ss_pred EecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCce----------eEEEe--C----CCceeeEE---E-CCCEE
Q 014003 188 LEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQS----------ASVIN--L----GAEVGSLI---C-EGPWV 246 (432)
Q Consensus 188 l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~----------~~~~~--~----~~~~~~~~---~-~~~~l 246 (432)
...|.+.|+++...+ .|+|+++|+.||.|.+||++.... +..+. + .-.+..+. . .|.+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 357899999999966 689999999999999999976431 11111 1 11122222 1 45555
Q ss_pred EEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC-----EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEE
Q 014003 247 FVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-----MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (432)
Q Consensus 247 ~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~-----~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 321 (432)
..+.|..+++||..+-+.......++.|++-+++|- ++++|..|-+|++.|+..+. ..+.+.+|.+.|.+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-----~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-----FSHTLSGHRDGVLA 193 (397)
T ss_pred cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-----ceeeeccccCceEE
Confidence 667999999999999988777777888888888764 88999999999999999986 47889999999999
Q ss_pred EEEe---CCEEEEEeCCCeEEEEECCCC-ceEEEe--------------cCCCCCcEEEEEc--CCEEEEEeCCCcEEEE
Q 014003 322 LAVG---GKRLYSGSMDNTIRVWDLDTL-EAVMTL--------------NGHTDAPMSLLCW--DQYLLSCSLDNTIKVW 381 (432)
Q Consensus 322 l~~~---~~~l~sgs~dg~I~vwd~~~~-~~~~~~--------------~~~~~~v~~~~~~--~~~l~s~s~dg~i~iw 381 (432)
+.|+ .-.|++|+.||.|++||++.. .+...+ ..|.+.+..+++. +.++++++.|..+++|
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w 273 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW 273 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence 9997 556899999999999999854 333333 3566778888887 7899999999999999
Q ss_pred EcCCCCc
Q 014003 382 IMTEEGN 388 (432)
Q Consensus 382 d~~~~~~ 388 (432)
+..+++.
T Consensus 274 n~~~G~n 280 (397)
T KOG4283|consen 274 NMESGRN 280 (397)
T ss_pred ecccCcc
Confidence 9987754
No 143
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.83 E-value=9.1e-20 Score=166.83 Aligned_cols=232 Identities=19% Similarity=0.259 Sum_probs=189.6
Q ss_pred CCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCC
Q 014003 90 KKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDE 169 (432)
Q Consensus 90 ~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 169 (432)
...|.++...|||+.|..|++-.++.|||+..|...... .+..+.-. .......+.+..|++...
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprika--eltssapa-------------CyALa~spDakvcFsccs 529 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKA--ELTSSAPA-------------CYALAISPDAKVCFSCCS 529 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhh--hcCCcchh-------------hhhhhcCCccceeeeecc
Confidence 356899999999999999999999999999887642211 11100111 123445566778889999
Q ss_pred CCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--ECCCEEE
Q 014003 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVF 247 (432)
Q Consensus 170 d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~l~ 247 (432)
||.|.|||+.+. ..+..|+||.+.+.||.++++|..|.||+-|.+||-||++++..+........+.++. +.+.+++
T Consensus 530 dGnI~vwDLhnq-~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWla 608 (705)
T KOG0639|consen 530 DGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLA 608 (705)
T ss_pred CCcEEEEEcccc-eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCcccee
Confidence 999999999887 8899999999999999999999999999999999999999999888887777776665 5888999
Q ss_pred EE-cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEE
Q 014003 248 VG-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV 324 (432)
Q Consensus 248 ~~-~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~ 324 (432)
+| .++.+.+......+...+..|...|.++.|.+- ++++.+.|.-+..|.+.-+.. +...+ ...+|.+..+
T Consensus 609 vGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas-----iFqsk-E~SsVlsCDI 682 (705)
T KOG0639|consen 609 VGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS-----IFQSK-ESSSVLSCDI 682 (705)
T ss_pred eecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccc-----eeecc-ccCcceeeee
Confidence 88 677899999988888999999999999999876 999999999999999887753 33333 3567777766
Q ss_pred e--CCEEEEEeCCCeEEEEEC
Q 014003 325 G--GKRLYSGSMDNTIRVWDL 343 (432)
Q Consensus 325 ~--~~~l~sgs~dg~I~vwd~ 343 (432)
+ .+++++|+.|....||.+
T Consensus 683 S~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 683 SFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCceEEEecCCCcceEEEEE
Confidence 5 899999999998888864
No 144
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.4e-18 Score=150.63 Aligned_cols=266 Identities=15% Similarity=0.183 Sum_probs=190.0
Q ss_pred ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC
Q 014003 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~ 233 (432)
+.-|..-+..++.|..+|.|-|||+.+- .+...+.+|..+|++++|+++|+.|+|+|.|..|.+||+..|.+++.+...
T Consensus 28 ~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~ 106 (405)
T KOG1273|consen 28 CCQFSRWGDYLAVGCANGRVVIYDFDTF-RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD 106 (405)
T ss_pred eEEeccCcceeeeeccCCcEEEEEcccc-chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc
Confidence 4446667789999999999999999886 577789999999999999999999999999999999999999999999999
Q ss_pred CceeeEEE----CCCEEEEEcCCeEEEEEccCCceEeec-CCcCC---EEE-EEEc--CCEEEEEECCCcEEEEECCCCC
Q 014003 234 AEVGSLIC----EGPWVFVGMPNVVKAWHIESSAEFSLD-GPVGE---VYS-MVVA--NEMLFAGAQDGNILVWKGIPNT 302 (432)
Q Consensus 234 ~~~~~~~~----~~~~l~~~~~~~i~vwd~~~~~~~~~~-~~~~~---v~~-l~~~--~~~l~~g~~dg~i~~wd~~~~~ 302 (432)
.++..... .+..+++-.+..-.+.++..+....+. ...+. +.+ ..++ ++++++|...|.+.++|..+-
T Consensus 107 spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~- 185 (405)
T KOG1273|consen 107 SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL- 185 (405)
T ss_pred CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh-
Confidence 88876653 344555555555555565544322111 11111 111 1233 449999999999999999885
Q ss_pred CCccccceeeeccc-cCeEEEEEe--CCEEEEEeCCCeEEEEECCCC-------c--eEEEecC--CCCCcEEEEEc--C
Q 014003 303 QNPFQLAALLKGHT-RPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL-------E--AVMTLNG--HTDAPMSLLCW--D 366 (432)
Q Consensus 303 ~~~~~~~~~~~~h~-~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~-------~--~~~~~~~--~~~~v~~~~~~--~ 366 (432)
+++..++-.. ..|..+-++ |..|+.-+.|..||.|+++.- + +.+++.. ....=.++.|+ |
T Consensus 186 ----e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 186 ----ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred ----eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 3566655444 667777776 999999999999999998631 1 1122211 11112344444 6
Q ss_pred CEEEEEeC-CCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 367 QYLLSCSL-DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 367 ~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
.|+++++. ...++||.-..+..++.+.+..+.. -....|+|-.. ++++- ..|.|+||..
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~---l~DV~whp~rp-~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEE---LLDVNWHPVRP-IIASI-ASGVVYIWAV 321 (405)
T ss_pred cEEEeccccceeEEEEecCCcceeeeecCCchhh---eeeccccccee-eeeec-cCCceEEEEe
Confidence 78877764 4579999999999888887766321 12333467655 66665 7899999975
No 145
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.7e-20 Score=184.07 Aligned_cols=222 Identities=18% Similarity=0.228 Sum_probs=179.2
Q ss_pred CceeeCCCCCeEEEEeCCC-----CcEEEEEEecccCcEEEEEecCCC-CEEEEEeCCCcEEEEeCCCCceeEEEe---C
Q 014003 162 GNCVKGDECRFWHSWFCGE-----GFTMLAKLEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSASVIN---L 232 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~-----~~~~~~~l~~H~~~V~~l~~~~~~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~---~ 232 (432)
+.++.|.+||.|-+||... ....+.++..|++.|..+.|++.. ++||+|+.||.|.|||++.-+...... .
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~ 160 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP 160 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC
Confidence 3589999999999999854 245567788999999999999865 499999999999999998755444442 3
Q ss_pred CCceeeEEECCC---EEEE-EcCCeEEEEEccCCceE-eecCC--cCCEEEEEEcCC---EEEEEECCC---cEEEEECC
Q 014003 233 GAEVGSLICEGP---WVFV-GMPNVVKAWHIESSAEF-SLDGP--VGEVYSMVVANE---MLFAGAQDG---NILVWKGI 299 (432)
Q Consensus 233 ~~~~~~~~~~~~---~l~~-~~~~~i~vwd~~~~~~~-~~~~~--~~~v~~l~~~~~---~l~~g~~dg---~i~~wd~~ 299 (432)
..++.++..+.+ +++. +.++.+.+||++..+.+ .+..+ ...+..+.|+|+ .+++++.|. .|.+||++
T Consensus 161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR 240 (1049)
T KOG0307|consen 161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR 240 (1049)
T ss_pred cccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence 455666665433 4444 46779999999988754 33333 245789999998 666666654 59999999
Q ss_pred CCCCCccccceeeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc---CCEEEEEe
Q 014003 300 PNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW---DQYLLSCS 373 (432)
Q Consensus 300 ~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~s 373 (432)
.... +.+++.+|...|.++.|. ..+|++++.|+.|.+|+.++++.+..+......+..+.|. ...+++++
T Consensus 241 ~ass----P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 241 FASS----PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred ccCC----chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhhe
Confidence 8753 678889999999999996 5889999999999999999999999999888889999998 46899999
Q ss_pred CCCcEEEEEcCCCC
Q 014003 374 LDNTIKVWIMTEEG 387 (432)
Q Consensus 374 ~dg~i~iwd~~~~~ 387 (432)
.||.|.|+.+....
T Consensus 317 fdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 317 FDGKISIYSLQGTD 330 (1049)
T ss_pred eccceeeeeeecCC
Confidence 99999999987654
No 146
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.5e-19 Score=153.37 Aligned_cols=208 Identities=16% Similarity=0.258 Sum_probs=149.5
Q ss_pred EEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCce
Q 014003 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAE 264 (432)
Q Consensus 185 ~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~ 264 (432)
+..|++|.+.|++++|+.||++|+|++.|++|++|+++.-... ..+.
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~---------------------------------eHr~ 125 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK---------------------------------EHRC 125 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh---------------------------------hhhH
Confidence 4458999999999999999999999999999999998752211 0011
Q ss_pred EeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCcccc-------ceeeeccccCeEEEEEe--CCEEEEE
Q 014003 265 FSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQL-------AALLKGHTRPVTCLAVG--GKRLYSG 332 (432)
Q Consensus 265 ~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~-------~~~~~~h~~~v~~l~~~--~~~l~sg 332 (432)
+...-..+..+.+.|.|| .+++.-...++++|.+...+...... ...-+.|.-.+..+-.. +.+++++
T Consensus 126 ~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsa 205 (420)
T KOG2096|consen 126 IRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSA 205 (420)
T ss_pred hhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEe
Confidence 112222334567888888 66666677789999876543321111 11122344555554443 8899999
Q ss_pred eCCCeEEEEECCCCceEEEecCCCCCcE--EEEEcCCEEEEEeCCCcEEEEEcCC--------CCceeEEeeccCCcceE
Q 014003 333 SMDNTIRVWDLDTLEAVMTLNGHTDAPM--SLLCWDQYLLSCSLDNTIKVWIMTE--------EGNLEVAYTHNEDHGVL 402 (432)
Q Consensus 333 s~dg~I~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s~s~dg~i~iwd~~~--------~~~~~~~~~~~~~~~~~ 402 (432)
+.|..|.+||++ |+.+..+......-. .++.+|+++++++.---|++|.+-- -..+..+.+|...+...
T Consensus 206 s~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~ 284 (420)
T KOG2096|consen 206 SLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAA 284 (420)
T ss_pred cCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeee
Confidence 999999999999 899888876554433 4445589999999999999998632 22355667787777666
Q ss_pred EEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 403 ALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 403 ~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+| +|+.. .+++.+.||+++|||+.
T Consensus 285 aF----sn~S~-r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 285 AF----SNSST-RAVTVSKDGKWRIWDTD 308 (420)
T ss_pred ee----CCCcc-eeEEEecCCcEEEeecc
Confidence 66 88888 89999999999999974
No 147
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=2.4e-18 Score=156.04 Aligned_cols=277 Identities=16% Similarity=0.161 Sum_probs=197.3
Q ss_pred cCCCceE--EeeccC--ceeeCCCCCeEEEEeCC---CCcEEEEEEecccCcEEEEEecCC-CCEEEEEeCCCcEEEEeC
Q 014003 150 TTPKNVC--YHWLSG--NCVKGDECRFWHSWFCG---EGFTMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDC 221 (432)
Q Consensus 150 ~~~~~~~--~~~~~~--~~~~g~~d~~i~vw~~~---~~~~~~~~l~~H~~~V~~l~~~~~-~~~l~s~s~Dg~v~iWd~ 221 (432)
+.....| ++|... .+++|+.-|.|-+||+. ....-+..+..|..+|.+|.|+|. ...+++.|+||+|+.=|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 3334444 444443 68899999999999993 344556778899999999999884 578999999999999999
Q ss_pred CCCceeEEEeCCCceeeEE-----E-CCCEEEEEcCCeEEEEEccCCce--EeecCCcCCEEEEEEcCC---EEEEEECC
Q 014003 222 HTGQSASVINLGAEVGSLI-----C-EGPWVFVGMPNVVKAWHIESSAE--FSLDGPVGEVYSMVVANE---MLFAGAQD 290 (432)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~-----~-~~~~l~~~~~~~i~vwd~~~~~~--~~~~~~~~~v~~l~~~~~---~l~~g~~d 290 (432)
+.+.....+........+. . +...+++..-|...+||++++.. ..+.-|...|.+++++|- ++++++.|
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D 344 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLD 344 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccC
Confidence 9876555555432222221 1 44566666777999999988764 355667779999999987 99999999
Q ss_pred CcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECC----CCceEEEecCCCCC------
Q 014003 291 GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLD----TLEAVMTLNGHTDA------ 358 (432)
Q Consensus 291 g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~----~~~~~~~~~~~~~~------ 358 (432)
++.+|||++.-....- +....-.|..+|.+..|+ +..|++.+.|..|+|||.. ...+..++. |+..
T Consensus 345 ~T~kIWD~R~l~~K~s-p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT 422 (498)
T KOG4328|consen 345 QTAKIWDLRQLRGKAS-PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLT 422 (498)
T ss_pred cceeeeehhhhcCCCC-cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCccccccc
Confidence 9999999987544211 233344699999999997 4459999999999999983 334444443 3221
Q ss_pred cEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 359 PMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 359 v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
.....|. ..++++|-.-..|-|+|-..++.+..+. ......+.....++|-+..+++.|+..|.|+||--
T Consensus 423 ~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~--~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 423 PFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH--DPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred chhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc--CccccccccceeecccccceeccCCccceEEEEec
Confidence 2333444 5788999888899999987766444433 33333333334458988756777778899999864
No 148
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=4.1e-20 Score=175.88 Aligned_cols=231 Identities=19% Similarity=0.291 Sum_probs=191.8
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.+..|+..|.+...-..++.+++|+.|-.+-||.+..+..... +. .++...+.+-++.....+
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S----~~-------------~hespIeSl~f~~~E~Ll 85 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS----LT-------------GHESPIESLTFDTSERLL 85 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe----ee-------------ccCCcceeeecCcchhhh
Confidence 5566888888888888889999999999999997666543111 11 111222455666677799
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCC
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (432)
++|..+|+|++||++.. +.+.+|.+|...+.++.|+|.+.++++|+.|+.+++||.+...|...+
T Consensus 86 aagsasgtiK~wDleeA-k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~-------------- 150 (825)
T KOG0267|consen 86 AAGSASGTIKVWDLEEA-KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY-------------- 150 (825)
T ss_pred cccccCCceeeeehhhh-hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeee--------------
Confidence 99999999999999987 778899999999999999999999999999999999999866666554
Q ss_pred EEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEE
Q 014003 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (432)
Q Consensus 245 ~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l 322 (432)
.+|...+..+.+.|+ +++.|++|..+++||...++ +...++.|...+.++
T Consensus 151 -----------------------~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk-----~~~ef~~~e~~v~sl 202 (825)
T KOG0267|consen 151 -----------------------KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK-----LSKEFKSHEGKVQSL 202 (825)
T ss_pred -----------------------cCCcceeEEEeecCCCceeeccCCcceeeeecccccc-----ccccccccccccccc
Confidence 457777888999998 89999999999999998875 578899999999999
Q ss_pred EEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCC
Q 014003 323 AVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLD 375 (432)
Q Consensus 323 ~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d 375 (432)
.|+ .-.+++|+.|+++++||+++.+.+.........|.+..|+ +..+++|..+
T Consensus 203 e~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 203 EFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 997 5678899999999999999999999999888999999998 4555555443
No 149
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=1.9e-18 Score=150.44 Aligned_cols=270 Identities=19% Similarity=0.258 Sum_probs=197.1
Q ss_pred CCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCCCCeE
Q 014003 94 PSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFW 173 (432)
Q Consensus 94 ~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 173 (432)
.+..|||||..+.+-++|.++++|++............ ...
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~-----~~~---------------------------------- 93 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGP-----LNF---------------------------------- 93 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCc-----ccc----------------------------------
Confidence 67899999999999999999999976554321100000 000
Q ss_pred EEEeCCCCcEEEEEEe-cccCcEEEEEe-------cCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC--------cee
Q 014003 174 HSWFCGEGFTMLAKLE-GHKKAVSGIAL-------PLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA--------EVG 237 (432)
Q Consensus 174 ~vw~~~~~~~~~~~l~-~H~~~V~~l~~-------~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~--------~~~ 237 (432)
+...+++ .....|...+| .|+..++++.+.|.-|++||.-+|+....+..-. ...
T Consensus 94 ---------~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL 164 (406)
T KOG2919|consen 94 ---------SKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSL 164 (406)
T ss_pred ---------ccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeE
Confidence 0000010 01233444444 3778899999999999999999999887776432 223
Q ss_pred eEEECCCEEEEEcCCeEEEEEc-cCCceE---e-----ecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCc
Q 014003 238 SLICEGPWVFVGMPNVVKAWHI-ESSAEF---S-----LDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNP 305 (432)
Q Consensus 238 ~~~~~~~~l~~~~~~~i~vwd~-~~~~~~---~-----~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~ 305 (432)
++.++|..|++|....|+++|+ +.+... . ..+..+.+.+++++|. .+++|+....+-||.-...
T Consensus 165 ~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~---- 240 (406)
T KOG2919|consen 165 QFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR---- 240 (406)
T ss_pred EecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC----
Confidence 4457999999999999999999 444321 1 2344677889999987 8899999999888876654
Q ss_pred cccceeeeccccCeEEEEEe--CCEEEEEeC-CCeEEEEECCC-CceEEEecCCCC-CcEEEEEc----CCEEEEEeCCC
Q 014003 306 FQLAALLKGHTRPVTCLAVG--GKRLYSGSM-DNTIRVWDLDT-LEAVMTLNGHTD-APMSLLCW----DQYLLSCSLDN 376 (432)
Q Consensus 306 ~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~-dg~I~vwd~~~-~~~~~~~~~~~~-~v~~~~~~----~~~l~s~s~dg 376 (432)
.++..+.+|.+.|+.+.|. |+.|++|+. |-.|.+||++. +.++..+..|.. .-..+.|+ +++|++|+.||
T Consensus 241 -~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG 319 (406)
T KOG2919|consen 241 -RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG 319 (406)
T ss_pred -CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc
Confidence 3577788999999999996 999999885 67899999986 556778888876 44455555 79999999999
Q ss_pred cEEEEEcCCC-CceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeC
Q 014003 377 TIKVWIMTEE-GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCN 421 (432)
Q Consensus 377 ~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~ 421 (432)
.|++||+++. ..+..+..+...+..+++ +|- .+++++++.
T Consensus 320 ~V~vwdlk~~gn~~sv~~~~sd~vNgvsl----nP~-mpilatssG 360 (406)
T KOG2919|consen 320 SVRVWDLKDLGNEVSVTGNYSDTVNGVSL----NPI-MPILATSSG 360 (406)
T ss_pred cEEEEecCCCCCcccccccccccccceec----Ccc-cceeeeccC
Confidence 9999999984 446666667777777777 676 447777654
No 150
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.5e-19 Score=159.46 Aligned_cols=279 Identities=12% Similarity=0.128 Sum_probs=215.1
Q ss_pred CCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccC-ceeeCCC
Q 014003 91 KSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG-NCVKGDE 169 (432)
Q Consensus 91 ~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~ 169 (432)
+.|+++.|.|.-..|.+++.||+++|+.+.+-....... ..+.+..-...|+++.+. .+++++.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS---------------~~l~~fPi~~a~f~p~G~~~i~~s~r 278 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQS---------------IHLEKFPIQKAEFAPNGHSVIFTSGR 278 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhhee---------------eeeccCccceeeecCCCceEEEeccc
Confidence 578999999999999999999999999776644321111 112233335778888888 8999999
Q ss_pred CCeEEEEeCCCC-cEEEEEEeccc-CcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--ECCCE
Q 014003 170 CRFWHSWFCGEG-FTMLAKLEGHK-KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPW 245 (432)
Q Consensus 170 d~~i~vw~~~~~-~~~~~~l~~H~-~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~ 245 (432)
..+.++||+.+. ...+..+.+++ ..+.....++++++|+..+..|.|.+-...+++.+..++..+.+..+. .+++.
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKE 358 (514)
T ss_pred ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcE
Confidence 999999999764 33444555665 467778889999999999999999999999999999999998887666 45555
Q ss_pred E-EEEcCCeEEEEEccCCceEeecCCcCCE--EEEE--EcCCEEEEEECCCcEEEEECCCCCC-CccccceeeeccccCe
Q 014003 246 V-FVGMPNVVKAWHIESSAEFSLDGPVGEV--YSMV--VANEMLFAGAQDGNILVWKGIPNTQ-NPFQLAALLKGHTRPV 319 (432)
Q Consensus 246 l-~~~~~~~i~vwd~~~~~~~~~~~~~~~v--~~l~--~~~~~l~~g~~dg~i~~wd~~~~~~-~~~~~~~~~~~h~~~v 319 (432)
+ +++.+|.|.+||++....+......+.| ++++ .++.++|+|+..|.|.|||..+... ...+++..+..-...|
T Consensus 359 l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~I 438 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAI 438 (514)
T ss_pred EEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheee
Confidence 4 5668999999999999876544444444 3344 4445999999999999999654311 1135666677778899
Q ss_pred EEEEEe--CCEEEEEeC--CCeEEEEECCCCceEEEecCCCC---CcEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 014003 320 TCLAVG--GKRLYSGSM--DNTIRVWDLDTLEAVMTLNGHTD---APMSLLCW--DQYLLSCSLDNTIKVWIMT 384 (432)
Q Consensus 320 ~~l~~~--~~~l~sgs~--dg~I~vwd~~~~~~~~~~~~~~~---~v~~~~~~--~~~l~s~s~dg~i~iwd~~ 384 (432)
++|+|+ .+.||.+|. +..+++--+.+......+..... .++|++|+ +.+|+.|..+|.+.+|.+.
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999997 777776664 67899998888777777765443 47899998 6899999999999999874
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=1e-18 Score=159.80 Aligned_cols=254 Identities=15% Similarity=0.206 Sum_probs=194.7
Q ss_pred CCCCCCCCCc-eecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEE--eeccCceeeCCC
Q 014003 93 PPSYNCPKNN-VRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCY--HWLSGNCVKGDE 169 (432)
Q Consensus 93 v~~~~~s~~g-~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~ 169 (432)
+.++.|+... --.|+.+.|..+++|.-.++....|-.. ........|. ....-.+++|+.
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~-----------------k~~gd~~~Cv~~~s~S~y~~sgG~ 99 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVR-----------------KLTGDNAFCVACASQSLYEISGGQ 99 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceee-----------------ccccchHHHHhhhhcceeeeccCc
Confidence 6899997777 4577888899999996444422111111 1111122333 333458899999
Q ss_pred CCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEE
Q 014003 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVG 249 (432)
Q Consensus 170 d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (432)
.+.|+|||+... .+.+.+++|++.|+++.++....|||+++..|.|.|..+.+++....+.++
T Consensus 100 ~~~Vkiwdl~~k-l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~---------------- 162 (673)
T KOG4378|consen 100 SGCVKIWDLRAK-LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID---------------- 162 (673)
T ss_pred CceeeehhhHHH-HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC----------------
Confidence 999999999854 567788999999999999999999999999999999999988776665432
Q ss_pred cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe-
Q 014003 250 MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG- 325 (432)
Q Consensus 250 ~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~- 325 (432)
....|.-+.+++. +|.+++.+|.|.+||+..... ...-.+.|..+...++|+
T Consensus 163 --------------------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~~~~HsAP~~gicfsp 218 (673)
T KOG4378|consen 163 --------------------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHASEAHSAPCRGICFSP 218 (673)
T ss_pred --------------------CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccchhhhccCCcCcceecC
Confidence 1223446667765 788899999999999987643 344567899999989886
Q ss_pred --CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCC-ceeEEeeccCCcc
Q 014003 326 --GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEG-NLEVAYTHNEDHG 400 (432)
Q Consensus 326 --~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~ 400 (432)
..+|++-+.|..|.+||.+..+....+. ...+..+++|. |.+|++|+..|.|..||++..+ ++.....|...++
T Consensus 219 sne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt 297 (673)
T KOG4378|consen 219 SNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVT 297 (673)
T ss_pred CccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccccee
Confidence 7789999999999999999888777775 44566777777 8899999999999999999754 5666777888887
Q ss_pred eEEEe
Q 014003 401 VLALG 405 (432)
Q Consensus 401 ~~~~~ 405 (432)
.++|.
T Consensus 298 ~vafq 302 (673)
T KOG4378|consen 298 RVAFQ 302 (673)
T ss_pred EEEee
Confidence 77774
No 152
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=7.9e-19 Score=156.41 Aligned_cols=206 Identities=19% Similarity=0.250 Sum_probs=160.8
Q ss_pred EEecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceE
Q 014003 187 KLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEF 265 (432)
Q Consensus 187 ~l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~ 265 (432)
.+.||+++|..++|+| +.+.+||||.|.+|.||++..+.....+. .-..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------------------------------epvv 125 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------------------------------EPVV 125 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------------------------------cceE
Confidence 4679999999999988 56789999999999999997665443221 1134
Q ss_pred eecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEE
Q 014003 266 SLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRV 340 (432)
Q Consensus 266 ~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~v 340 (432)
.+.+|...|--+.|+|. .|++++.|.+|.+||+.++.. +..+. |.+.|+++.|+ |.+|++.+.|..|||
T Consensus 126 ~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea-----li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv 199 (472)
T KOG0303|consen 126 ELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA-----LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRV 199 (472)
T ss_pred EEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce-----eeecC-CCCeEEEEEeccCCceeeeecccceeEE
Confidence 56899999999999987 899999999999999999863 34455 99999999997 999999999999999
Q ss_pred EECCCCceEEEecCCCCCc-EEEEEc--CCEEEEEe----CCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCC
Q 014003 341 WDLDTLEAVMTLNGHTDAP-MSLLCW--DQYLLSCS----LDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGN 413 (432)
Q Consensus 341 wd~~~~~~~~~~~~~~~~v-~~~~~~--~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~ 413 (432)
||.++++.+..-.+|.+.- ....|- +. +++.+ ++.++-+||..+-+....+....... -.+...|+||.+
T Consensus 200 ~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn--Gvl~PFyD~dt~ 276 (472)
T KOG0303|consen 200 IDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN--GVLLPFYDPDTS 276 (472)
T ss_pred EcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCC--ceEEeeecCCCC
Confidence 9999999999998888753 333333 45 55444 47789999988766554443322221 123345689999
Q ss_pred cEEEEEeCCCeEEEeeCC
Q 014003 414 PVLICSCNDDSVHLYELP 431 (432)
Q Consensus 414 ~~l~sg~~Dg~I~iwdl~ 431 (432)
.+.++|-.|+.||.|.+.
T Consensus 277 ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 277 IVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred EEEEEecCCcceEEEEec
Confidence 788899999999999875
No 153
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.81 E-value=2e-17 Score=151.80 Aligned_cols=329 Identities=15% Similarity=0.164 Sum_probs=229.1
Q ss_pred eeeeeecCccCCCCCccccccCCCCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCC
Q 014003 60 LCVYFLEGRCNRNPCRFAHTESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSD 139 (432)
Q Consensus 60 ~~~~~~~~~~~~~p~~~l~~~~~~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~ 139 (432)
+-..|..+-| ++.. +.+ +|.+.|.++.--.+|..|. |+.|..|.+||-+-... .+ ....+
T Consensus 268 ~i~Iw~~~~~-----~~~k-----~~~-aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~--r~------~elPe 327 (626)
T KOG2106|consen 268 NILIWSKGTN-----RISK-----QVH-AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKL--RE------TELPE 327 (626)
T ss_pred eEEEEeCCCc-----eEEe-----Eee-ecCCceEEEEEecCccEee-cCccceEEecccccccc--cc------ccCch
Confidence 5567777443 3322 233 7999999999999999777 99999999997211111 00 01111
Q ss_pred CCCCceeeeecCCCceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEE
Q 014003 140 DSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLW 219 (432)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iW 219 (432)
.-+..|.+.. ..+.+..|.....|.-=.++.+.. ...++|.+....++.+|+.+.++|++.|+++++|
T Consensus 328 ~~G~iRtv~e----------~~~di~vGTtrN~iL~Gt~~~~f~--~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW 395 (626)
T KOG2106|consen 328 QFGPIRTVAE----------GKGDILVGTTRNFILQGTLENGFT--LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLW 395 (626)
T ss_pred hcCCeeEEec----------CCCcEEEeeccceEEEeeecCCce--EEEEecccceeeEEcCCChhheeeccCcceEEEc
Confidence 1122222222 222355555556666666666543 3457899999999999999999999999999999
Q ss_pred eCCCCceeEEEeCCCceeeEE--ECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEE
Q 014003 220 DCHTGQSASVINLGAEVGSLI--CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILV 295 (432)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~ 295 (432)
+ ..+.+-+.....+..+.. +.+.++++...|...+.|.++...+.......++.++.++|+ ++|+|+.|+.|++
T Consensus 396 ~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 396 N--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYI 473 (626)
T ss_pred c--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEE
Confidence 9 566666666666666555 566344445889999999999888877766999999999998 9999999999999
Q ss_pred EECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEE-----------------ec-CC
Q 014003 296 WKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMT-----------------LN-GH 355 (432)
Q Consensus 296 wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~-----------------~~-~~ 355 (432)
|-+..+.. +..+.-+.+..+|+.+.|+ ++++.+-+-|-.|..|....-+.+.. +- .+
T Consensus 474 y~Vs~~g~---~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~ 550 (626)
T KOG2106|consen 474 YRVSANGR---KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSD 550 (626)
T ss_pred EEECCCCc---EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccC
Confidence 99887653 2233334455899999997 89999999999999995433222111 11 12
Q ss_pred CCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc---eeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 356 TDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN---LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 356 ~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
...+..++-+ .+.+++|...|+|++|...-.+. ...+.+|...+..++| ..+.. .+++.+.|..|..|++
T Consensus 551 ~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~F----l~~d~-~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 551 GTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAF----LCKDS-HLISTGKDTSIMQWRL 625 (626)
T ss_pred CchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEE----eeCCc-eEEecCCCceEEEEEe
Confidence 2223333333 68899999999999998654332 3445567777777777 44555 5666669999999987
No 154
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.3e-19 Score=173.71 Aligned_cols=195 Identities=17% Similarity=0.316 Sum_probs=155.7
Q ss_pred cEEEEEec-CCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcC
Q 014003 194 AVSGIALP-LRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVG 272 (432)
Q Consensus 194 ~V~~l~~~-~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~ 272 (432)
.+..+.|. -+.++|||++..|.|.+||+...- +......+..|.-
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~----------------------------------rnk~l~~f~EH~R 134 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI----------------------------------RNKLLTVFNEHER 134 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc----------------------------------cchhhhHhhhhcc
Confidence 34556674 357899999999999999997521 1112234568888
Q ss_pred CEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCC
Q 014003 273 EVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTL 346 (432)
Q Consensus 273 ~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~ 346 (432)
.+.++.|++. +|++|++||.|++||++..+. ...+.+....|..++|+ +++++++.+.|.+++||+|..
T Consensus 135 s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-----~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp 209 (839)
T KOG0269|consen 135 SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-----KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP 209 (839)
T ss_pred ceeeeeeccCCccEEEecCCCceEEEEeeecccc-----cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCc
Confidence 9999999865 999999999999999998764 55566778899999997 889999999999999999864
Q ss_pred -ceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEe-eccCCcceEEEeeeeCCCCCcEEEEEe--
Q 014003 347 -EAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAY-THNEDHGVLALGGLNDPDGNPVLICSC-- 420 (432)
Q Consensus 347 -~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~sp~g~~~l~sg~-- 420 (432)
++...+.+|.++|.++.|+ ..+||||+.|+.|+|||+.+.+...... ....++..+.| -|+..+.|++++
T Consensus 210 ~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkW----RP~~~~hLAtcsmv 285 (839)
T KOG0269|consen 210 DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKW----RPARSYHLATCSMV 285 (839)
T ss_pred hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeee----ccCccchhhhhhcc
Confidence 5688899999999999999 5799999999999999998765443333 33445556666 688877788774
Q ss_pred CCCeEEEeeCC
Q 014003 421 NDDSVHLYELP 431 (432)
Q Consensus 421 ~Dg~I~iwdl~ 431 (432)
.|-.|+|||++
T Consensus 286 ~dtsV~VWDvr 296 (839)
T KOG0269|consen 286 VDTSVHVWDVR 296 (839)
T ss_pred ccceEEEEeec
Confidence 68889999985
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.3e-18 Score=149.26 Aligned_cols=261 Identities=15% Similarity=0.209 Sum_probs=188.6
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecC--CCCEEEEEeCCCcEEEEeCCCCceeEEEeCC----Cc
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL--RSDKLYSGSRDGTVQLWDCHTGQSASVINLG----AE 235 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~--~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~----~~ 235 (432)
+.++++-..|.|++||..++ +.+..+++|...+..+.|.. ....+.+|+.||+|++||+++......+... .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg-~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG-QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccch-hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 56888889999999999996 78999999999999999955 5678999999999999999987766555533 23
Q ss_pred eeeEE--ECCCEEEEE-----cCCeEEEEEccCCce-E--eecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCC
Q 014003 236 VGSLI--CEGPWVFVG-----MPNVVKAWHIESSAE-F--SLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNT 302 (432)
Q Consensus 236 ~~~~~--~~~~~l~~~-----~~~~i~vwd~~~~~~-~--~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~ 302 (432)
..++. +...+++++ .+-.|.+||++..+. + -...|...|+++.|+|. +|++|+.||-|.+||+....
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 44554 366777776 456899999998876 3 35689999999999987 99999999999999998764
Q ss_pred CCccccceeeeccccCeEEEEEeC---CEEEEEeCCCeEEEEECCCCceEEEecCCC------------CCcEEEEEc--
Q 014003 303 QNPFQLAALLKGHTRPVTCLAVGG---KRLYSGSMDNTIRVWDLDTLEAVMTLNGHT------------DAPMSLLCW-- 365 (432)
Q Consensus 303 ~~~~~~~~~~~~h~~~v~~l~~~~---~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~------------~~v~~~~~~-- 365 (432)
. -..+...-.|...|.++.|.+ +.+.+-+..++..+|+++.+.+...+.... ..+......
T Consensus 200 E--eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~ 277 (376)
T KOG1188|consen 200 E--EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGD 277 (376)
T ss_pred c--hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCC
Confidence 3 223333345788899999972 368888999999999999988766554321 111222211
Q ss_pred CCEEEEEeC-CCcEEEEEcCC---C---CceeEEee-ccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 366 DQYLLSCSL-DNTIKVWIMTE---E---GNLEVAYT-HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 366 ~~~l~s~s~-dg~i~iwd~~~---~---~~~~~~~~-~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
....+.++. -+...++-+.. + +.+..+.+ |...+..+.+ ...+. ++.+|++||.+.+|..
T Consensus 278 ~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~----~~~~~-~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 278 KDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILF----DVKND-VLYTGGEDGLLQAWKV 345 (376)
T ss_pred cceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhh----hcccc-eeeccCCCceEEEEec
Confidence 244444444 56666665542 1 22333333 3333444444 44555 8999999999999984
No 156
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.80 E-value=1.4e-17 Score=158.21 Aligned_cols=264 Identities=22% Similarity=0.285 Sum_probs=189.6
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCC---EEEEEeCCCcEEEEeCCCCceeEEEeCCC---
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSD---KLYSGSRDGTVQLWDCHTGQSASVINLGA--- 234 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~---~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~--- 234 (432)
...+++-+....|.+||..+. ..+.++.||..+|+|+.|-|..+ ++++|+.|++|++|.++............
T Consensus 24 ~~~~vafGa~~~Iav~dp~k~-~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~ 102 (764)
T KOG1063|consen 24 PGGLVAFGAGPAIAVADPEKI-LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCK 102 (764)
T ss_pred ccceEEecCCceEEEeCcccc-eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcce
Confidence 334444455678999999876 67888999999999999988877 89999999999999999665555554433
Q ss_pred ceeeEEECCCEEEE-EcCCeEEEEEccCCceE-----eecCCcCCEEEEEEcC--C--EEEEEECCCcEEEEECCCCCCC
Q 014003 235 EVGSLICEGPWVFV-GMPNVVKAWHIESSAEF-----SLDGPVGEVYSMVVAN--E--MLFAGAQDGNILVWKGIPNTQN 304 (432)
Q Consensus 235 ~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~-----~~~~~~~~v~~l~~~~--~--~l~~g~~dg~i~~wd~~~~~~~ 304 (432)
.+.++........+ +.++.+.+||.+..+.. .+.....-..|++..+ + .++.|+.+..|.++.-...
T Consensus 103 ~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d--- 179 (764)
T KOG1063|consen 103 ECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSAD--- 179 (764)
T ss_pred eEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCc---
Confidence 33344333333333 58999999999665522 2222222223444444 3 6777888888888876633
Q ss_pred ccccceeeeccccCeEEEEEe-----CCEEEEEeCCCeEEEEECCCCc---------------------eE---------
Q 014003 305 PFQLAALLKGHTRPVTCLAVG-----GKRLYSGSMDNTIRVWDLDTLE---------------------AV--------- 349 (432)
Q Consensus 305 ~~~~~~~~~~h~~~v~~l~~~-----~~~l~sgs~dg~I~vwd~~~~~---------------------~~--------- 349 (432)
.+..+..+.+|.+.|.+++|. .-+|+++|.|..||||.+.-+. ..
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 377889999999999999996 3478999999999999874322 11
Q ss_pred -EEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEee---ccCCcceEEEeeeeCCCCCcEEEEEeCCC
Q 014003 350 -MTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYT---HNEDHGVLALGGLNDPDGNPVLICSCNDD 423 (432)
Q Consensus 350 -~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg 423 (432)
..+.||.+.|.++.|. +..|+++|.|.++.+|...+..-+..-.. .......--+.+.|+|++. .+++-+.-|
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~-~ii~~g~~G 338 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN-VIIAHGRTG 338 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC-EEEEecccC
Confidence 1234999999999999 45799999999999998876643333222 1121122246778899998 888888999
Q ss_pred eEEEee
Q 014003 424 SVHLYE 429 (432)
Q Consensus 424 ~I~iwd 429 (432)
..++|.
T Consensus 339 g~hlWk 344 (764)
T KOG1063|consen 339 GFHLWK 344 (764)
T ss_pred cEEEEe
Confidence 999997
No 157
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.2e-17 Score=140.10 Aligned_cols=246 Identities=14% Similarity=0.163 Sum_probs=174.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeecc
Q 014003 82 QTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (432)
Q Consensus 82 ~~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (432)
+..+..+|.++|..++|. ..+|.|++ ||-|+-|.-.+..... ...-.+....+...........+..-..|..
T Consensus 54 ~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~----~~K~lwe~~~P~~~~~~evPeINam~ldP~e 126 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESL----ATKRLWEVKIPMQVDAVEVPEINAMWLDPSE 126 (325)
T ss_pred ceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhc----cchhhhhhcCccccCcccCCccceeEeccCC
Confidence 334568999999999998 55777777 7999987433321100 0000011110000001111112344556667
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCc------
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE------ 235 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~------ 235 (432)
+.++.++.|+.++-||++++ +...+++||++.|.+++--.....++||++||++|+||+++++++..+.....
T Consensus 127 nSi~~AgGD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp 205 (325)
T KOG0649|consen 127 NSILFAGGDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRP 205 (325)
T ss_pred CcEEEecCCeEEEEEEecCC-EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCc
Confidence 78888889999999999999 88999999999999999855556799999999999999999999988874322
Q ss_pred -----eeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccce
Q 014003 236 -----VGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAA 310 (432)
Q Consensus 236 -----~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~ 310 (432)
+.++..+..++++|....+.+|+++..+......-...+..+.|..+.++++++.+.+.-|.+..- +..
T Consensus 206 ~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gv------l~a 279 (325)
T KOG0649|consen 206 DWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNGV------LQA 279 (325)
T ss_pred ccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeeccE------EEE
Confidence 345667889999999999999999999988888888899999999999999999999999987653 222
Q ss_pred eeeccccCeEEEEEe---CCEEEEEeCCCeEEEE
Q 014003 311 LLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVW 341 (432)
Q Consensus 311 ~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vw 341 (432)
..+......++..++ -+++-.++....+.|+
T Consensus 280 ~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 280 NIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred eccCCccceeeecccCCceEEEEecccceeeeee
Confidence 333333444555554 3344455555566554
No 158
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=3e-18 Score=159.30 Aligned_cols=260 Identities=17% Similarity=0.274 Sum_probs=183.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeecc
Q 014003 82 QTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (432)
Q Consensus 82 ~~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (432)
+..++.-|.+.|..++|.+-.--|+++++||++++|++.... +..
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~----~s~------------------------------- 330 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK----KSA------------------------------- 330 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC----Ccc-------------------------------
Confidence 344667788899999998888889999999999999773310 000
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~ 241 (432)
....+++.+|++|+++|.|++++++++.+++|+-||+|+.|++....-.
T Consensus 331 -----------------~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp-------------- 379 (577)
T KOG0642|consen 331 -----------------EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP-------------- 379 (577)
T ss_pred -----------------ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc--------------
Confidence 0112778999999999999999999999999999999999987632211
Q ss_pred CCCEEEEEcCCeEEEEEccCCce--EeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeecccc
Q 014003 242 EGPWVFVGMPNVVKAWHIESSAE--FSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 242 ~~~~l~~~~~~~i~vwd~~~~~~--~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
+|...... -.+.+|.+.++.+++++. .|++++.||+++.|+....... .....+.| .
T Consensus 380 ---------------~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~---~f~~~~e~-g 440 (577)
T KOG0642|consen 380 ---------------DDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC---TFGEPKEH-G 440 (577)
T ss_pred ---------------ccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcc---ccCCcccc-C
Confidence 11111111 145789999999999876 9999999999999998766431 01111222 2
Q ss_pred CeEEEEEeCCEEEEEeCCCeEE---EEECCCCceEEEecCCCC-------CcEEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 014003 318 PVTCLAVGGKRLYSGSMDNTIR---VWDLDTLEAVMTLNGHTD-------APMSLLCW--DQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 318 ~v~~l~~~~~~l~sgs~dg~I~---vwd~~~~~~~~~~~~~~~-------~v~~~~~~--~~~l~s~s~dg~i~iwd~~~ 385 (432)
.-.++++-....+-...+.... ++|++....+..+..... .+..+... ..+.+++..|+.|+++|..+
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 2245555433322222333333 444444444444432211 23344444 57899999999999999999
Q ss_pred CCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 386 EGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+..+.....|...++.+++ .|+|- +|++|+.||.+++|.+.
T Consensus 521 ~~~l~s~~a~~~svtslai----~~ng~-~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 521 GKILHSMVAHKDSVTSLAI----DPNGP-YLMSGSHDGSVRLWKLD 561 (577)
T ss_pred cccchheeeccceecceee----cCCCc-eEEeecCCceeehhhcc
Confidence 9999999999999999998 79988 99999999999999874
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.78 E-value=1.1e-17 Score=153.17 Aligned_cols=219 Identities=15% Similarity=0.191 Sum_probs=166.5
Q ss_pred eeeCCCCCeEEEEeCCCC---cEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE
Q 014003 164 CVKGDECRFWHSWFCGEG---FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI 240 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~---~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~ 240 (432)
+++-+.|+.+++|.-... ...+..+.+. .-.|++......|+++|+..+.|+|||++...+.+.
T Consensus 50 vas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~----------- 116 (673)
T KOG4378|consen 50 VASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRF----------- 116 (673)
T ss_pred EeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhh-----------
Confidence 455678889999987544 2223333333 334455445568999999999999999985444433
Q ss_pred ECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeecc-cc
Q 014003 241 CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH-TR 317 (432)
Q Consensus 241 ~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h-~~ 317 (432)
+.+|...|+++.++.+ +|++++..|.|.+..+.++.. ...+... ..
T Consensus 117 --------------------------lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-----tt~f~~~sgq 165 (673)
T KOG4378|consen 117 --------------------------LKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-----TTTFTIDSGQ 165 (673)
T ss_pred --------------------------ccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-----ccceecCCCC
Confidence 3678899999999876 999999999999999988753 3334322 34
Q ss_pred CeEEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEe-cCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEcCCCCcee
Q 014003 318 PVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTL-NGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLE 390 (432)
Q Consensus 318 ~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~-~~~~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~ 390 (432)
.|.-+.|+ ..+|.+++.+|.|.+||+....+++.+ +.|..+...++|+ ..+|++.+.|..|.+||........
T Consensus 166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence 55677776 456788999999999999988887766 6788888888887 5789999999999999998766554
Q ss_pred EEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 391 VAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.+. ...+...++| +++|. +|++|...|.|..||+++
T Consensus 246 ~l~-y~~Plstvaf----~~~G~-~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 246 RLT-YSHPLSTVAF----SECGT-YLCAGNSKGELIAYDMRS 281 (673)
T ss_pred eee-ecCCcceeee----cCCce-EEEeecCCceEEEEeccc
Confidence 443 3445566777 79998 999999999999999874
No 160
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=2.7e-17 Score=146.73 Aligned_cols=204 Identities=16% Similarity=0.156 Sum_probs=152.0
Q ss_pred CCCCCCCCCCCCCCC-CCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCC--ceEEeecc
Q 014003 85 PVSNHKKSPPSYNCP-KNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHWLS 161 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s-~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 161 (432)
.+-||+++|..++|. .+..-+||||+|.+|+||.+..++...+.. .....+..|... .+..++.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------------epvv~L~gH~rrVg~V~wHPtA 143 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------------EPVVELYGHQRRVGLVQWHPTA 143 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------------cceEEEeecceeEEEEeecccc
Confidence 558999999999994 677779999999999999888877643332 222334444433 44555555
Q ss_pred C-ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC---cee
Q 014003 162 G-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA---EVG 237 (432)
Q Consensus 162 ~-~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~---~~~ 237 (432)
. .+++++.|.+|.+|++.++ +.+.++. |.+.|+++.|+.+|.+|+|.+.|+.|||||.++++.+..-..+. +..
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tg-eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~R 221 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTG-EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPAR 221 (472)
T ss_pred hhhHhhccCCceEEEEeccCC-ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcce
Confidence 5 7889999999999999999 4455566 99999999999999999999999999999999999888774322 222
Q ss_pred eEE-ECCCEEEEE----cCCeEEEEEccCCce---EeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCC
Q 014003 238 SLI-CEGPWVFVG----MPNVVKAWHIESSAE---FSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNT 302 (432)
Q Consensus 238 ~~~-~~~~~l~~~----~~~~i~vwd~~~~~~---~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~ 302 (432)
.+. .++.++.+| .+..+-+||...-+. +........|.--.++++ ..++|-.|+.|+-|.+....
T Consensus 222 aifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 222 AIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 232 477777776 567899998765432 222233444555566666 66778889999999987764
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=1.7e-15 Score=146.44 Aligned_cols=320 Identities=27% Similarity=0.416 Sum_probs=228.7
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEE-eeccC-
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCY-HWLSG- 162 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 162 (432)
...+|...+..+.+.+.+..++.++.|+.+.+|+...+... ...+. ... . ......+. .....
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~---~~~--~-------~~~~~~~~~~~~~~~ 124 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKL---IKSLE---GLH--D-------SSVSKLALSSPDGNS 124 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCcee---EEEEe---ccC--C-------CceeeEEEECCCcce
Confidence 45789999999999999999999999999999987766410 00000 000 0 00011222 33333
Q ss_pred ceee-CCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeC-CCcEEEEeCCCCceeEEEeC-CCceeeE
Q 014003 163 NCVK-GDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR-DGTVQLWDCHTGQSASVINL-GAEVGSL 239 (432)
Q Consensus 163 ~~~~-g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~-~~~~~~~ 239 (432)
.++. +..|+.+.+|+..........+..|...|.+++|+|++..+++++. |+.+++|++..+..+..+.. ...+..+
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 204 (466)
T COG2319 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204 (466)
T ss_pred EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE
Confidence 3333 4458999999998744778889999999999999999999999986 99999999998888777775 4455555
Q ss_pred E--ECCC-EEEE-EcCCeEEEEEccCCceEe--ecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCcccccee
Q 014003 240 I--CEGP-WVFV-GMPNVVKAWHIESSAEFS--LDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAAL 311 (432)
Q Consensus 240 ~--~~~~-~l~~-~~~~~i~vwd~~~~~~~~--~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~ 311 (432)
. +++. ++++ +.++.+++||...+.... ...|.... ...+.++ .+++++.|+.+++||...... ....
T Consensus 205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~~~~ 279 (466)
T COG2319 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS----LLRT 279 (466)
T ss_pred EEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----EEEE
Confidence 4 3554 4444 689999999988776654 56666664 2256665 778899999999999987653 1233
Q ss_pred eeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEec--CCCCCcEEEEEc-C-CEEEEE-eCCCcEEEEEcC
Q 014003 312 LKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN--GHTDAPMSLLCW-D-QYLLSC-SLDNTIKVWIMT 384 (432)
Q Consensus 312 ~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~--~~~~~v~~~~~~-~-~~l~s~-s~dg~i~iwd~~ 384 (432)
+..|...+.++.++ +..+++++.|+.+.+||.++........ .|...+..+.+. + ..++.+ ..|+.+.+|++.
T Consensus 280 ~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecC
Confidence 36788999999987 5788889999999999999888777766 787778888773 1 455555 688999999998
Q ss_pred CCCceeEEeeccCCcceEEEeeeeCCCCCcEEEE-EeCCCeEEEeeCC
Q 014003 385 EEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLIC-SCNDDSVHLYELP 431 (432)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~s-g~~Dg~I~iwdl~ 431 (432)
............ ....+.+ ++ .. .+.. +..++.+.+|+.+
T Consensus 360 ~~~~~~~~~~~~-~~~~~~~----~~-~~-~~~~~~~~~~~~~~~~~~ 400 (466)
T COG2319 360 TGKPLKTLEGHS-NVLSVSF----SP-DG-RVVSSGSTDGTVRLWDLS 400 (466)
T ss_pred CCceeEEecCCc-eEEEEEE----CC-CC-CEEEEecCCCceEEEecc
Confidence 877222222111 1233333 55 43 4444 7899999999976
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.77 E-value=1.7e-17 Score=142.36 Aligned_cols=207 Identities=19% Similarity=0.202 Sum_probs=154.1
Q ss_pred EEEEEEe-cccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCce-eEEEeCCCceeeEEECCCEEEEEcCCeEEEEEcc
Q 014003 183 TMLAKLE-GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS-ASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIE 260 (432)
Q Consensus 183 ~~~~~l~-~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~ 260 (432)
+.+..|. .|-+.|.|+.|.|++..+++-. |..|.+|+++.+.. ...+.....
T Consensus 113 E~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s------------------------- 166 (370)
T KOG1007|consen 113 ECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSES------------------------- 166 (370)
T ss_pred hHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccc-------------------------
Confidence 3344454 5667999999999999999876 78899999987765 333221111
Q ss_pred CCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe---CCEEEEEeC
Q 014003 261 SSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSM 334 (432)
Q Consensus 261 ~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~ 334 (432)
.++....++-.|+|. ..+....|+++..||+++... ....-.+|...|..+.|+ ..+|++|+.
T Consensus 167 -------~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~----~~sI~dAHgq~vrdlDfNpnkq~~lvt~gD 235 (370)
T KOG1007|consen 167 -------AEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKK----NNSIEDAHGQRVRDLDFNPNKQHILVTCGD 235 (370)
T ss_pred -------ccccceecccccCCCCccceEEEeCCCcEEEEEccchhh----hcchhhhhcceeeeccCCCCceEEEEEcCC
Confidence 123445566677774 566777899999999997653 344456788899999998 557999999
Q ss_pred CCeEEEEECCC-CceEEEecCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEcCCC------------------------
Q 014003 335 DNTIRVWDLDT-LEAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEE------------------------ 386 (432)
Q Consensus 335 dg~I~vwd~~~-~~~~~~~~~~~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~------------------------ 386 (432)
||.|++||.+. ..+++++.+|.-.|.++.|+ +++|++++.|..|.+|....-
T Consensus 236 dgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~ 315 (370)
T KOG1007|consen 236 DGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERV 315 (370)
T ss_pred CccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhc
Confidence 99999999986 45799999999999999998 689999999999999965421
Q ss_pred -----CceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 387 -----GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 387 -----~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
..+..+..|...+.+.+ ||.-...++++-+.||.+.|=.+
T Consensus 316 kpL~dg~l~tydehEDSVY~~a----WSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 316 KPLQDGQLETYDEHEDSVYALA----WSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccccccccccceEEEe----eccCCCeeEEEeccCceEEeecC
Confidence 11223444555554444 46777778999999999987554
No 163
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.77 E-value=1.2e-16 Score=155.44 Aligned_cols=254 Identities=15% Similarity=0.236 Sum_probs=185.3
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCcee-------EEEeCCCceeeEEE-
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSA-------SVINLGAEVGSLIC- 241 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~~-------~~~~~~~~~~~~~~- 241 (432)
+.+.+|++.....+...+.. ...|++++|+| +.++++.|..+|+|.+||+..+... ....+..++..+..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999877666666654 68899999988 5688899999999999999877642 22224445555442
Q ss_pred ----CCCEEEEEcCCeEEEEEccCCceE-------e------ecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCC
Q 014003 242 ----EGPWVFVGMPNVVKAWHIESSAEF-------S------LDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPN 301 (432)
Q Consensus 242 ----~~~~l~~~~~~~i~vwd~~~~~~~-------~------~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~ 301 (432)
+..++.++.||.|..|+++.-... . .......++++.|.+. .+++|+++|.|..-+-...
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 345888889999999987654321 0 1123446778888755 9999999999988443332
Q ss_pred CCC---ccccceeeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECC-CCceEEEecCCCCCcEEEEEc---CCEEEE
Q 014003 302 TQN---PFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLD-TLEAVMTLNGHTDAPMSLLCW---DQYLLS 371 (432)
Q Consensus 302 ~~~---~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~-~~~~~~~~~~~~~~v~~~~~~---~~~l~s 371 (432)
+.. .++....+..|.++|+++.++ ...+++++ |.+++||... ...++..+..+...+.+++|+ ...+++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 211 123445667789999999987 45555555 9999999988 778888888888889999999 578999
Q ss_pred EeCCCcEEEEEcCCCCc--eeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 372 CSLDNTIKVWIMTEEGN--LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 372 ~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+..||.|.+||+..... +........... ...|++.|+ +|++|...|.+++|++.
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~----~~~~s~~g~-~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALT----RVRWSPNGK-LLAVGDANGTTHILKLS 516 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccc----eeecCCCCc-EEEEecCCCcEEEEEcC
Confidence 99999999999976543 222222222222 233478898 99999999999999985
No 164
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.2e-17 Score=146.04 Aligned_cols=297 Identities=18% Similarity=0.179 Sum_probs=208.3
Q ss_pred CCccccccCCCCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCC
Q 014003 73 PCRFAHTESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP 152 (432)
Q Consensus 73 p~~~l~~~~~~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (432)
.-+++|..+-...+.||.+-|+.+.||.+|++||||+.|.-++||+++..-..
T Consensus 39 ~~~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~--------------------------- 91 (609)
T KOG4227|consen 39 RPDFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR--------------------------- 91 (609)
T ss_pred chhhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh---------------------------
Confidence 34455655555678999999999999999999999999999999964432110
Q ss_pred CceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEE-ecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEe
Q 014003 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKL-EGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN 231 (432)
Q Consensus 153 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l-~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~ 231 (432)
...+++... ..|.+.|.+++|...+..|++|+.+++|...|+++.+.+.++.
T Consensus 92 ---------------------------k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~ 144 (609)
T KOG4227|consen 92 ---------------------------KTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVAN 144 (609)
T ss_pred ---------------------------cCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeec
Confidence 000333333 3466999999999999999999999999999999999999988
Q ss_pred CCC---ceeeEE---ECCCEEEEEcCCeEEEEEccCCc----eEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEEC
Q 014003 232 LGA---EVGSLI---CEGPWVFVGMPNVVKAWHIESSA----EFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKG 298 (432)
Q Consensus 232 ~~~---~~~~~~---~~~~~l~~~~~~~i~vwd~~~~~----~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~ 298 (432)
+.. .+..+. .++.+++++.++.|.+||.+..+ .+-..........+.|+|. +|++.+..+-+-+||.
T Consensus 145 ~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~ 224 (609)
T KOG4227|consen 145 ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDR 224 (609)
T ss_pred ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceee
Confidence 776 333332 26667778899999999998765 3344455566778888877 8999999999999999
Q ss_pred CCCCCCccccc--eeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCce-EEEecCCCC-------CcEEEEEc-
Q 014003 299 IPNTQNPFQLA--ALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA-VMTLNGHTD-------APMSLLCW- 365 (432)
Q Consensus 299 ~~~~~~~~~~~--~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~-~~~~~~~~~-------~v~~~~~~- 365 (432)
+.......+.- ..++.....-....|+ |+.|.+--.-..-.+||+-+.++ +.++. |+. .+.++.|-
T Consensus 225 R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~ 303 (609)
T KOG4227|consen 225 RMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFID 303 (609)
T ss_pred ccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeec
Confidence 87653211100 0111111122345565 77777766666667888877554 44443 322 34555555
Q ss_pred CCEEEEEeCCCcEEEEEcCCC-----------------------CceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCC
Q 014003 366 DQYLLSCSLDNTIKVWIMTEE-----------------------GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND 422 (432)
Q Consensus 366 ~~~l~s~s~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~D 422 (432)
+.-+++|+.+-.|++|.+... +.+..+.+|...+..+.| +|... +|++++-.
T Consensus 304 D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF----~~H~~-~l~SSGVE 378 (609)
T KOG4227|consen 304 DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRF----SQHNN-LLVSSGVE 378 (609)
T ss_pred ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceee----cCCcc-eEeccchh
Confidence 456899999999999987531 123345566666666666 77776 88888999
Q ss_pred CeEEEee
Q 014003 423 DSVHLYE 429 (432)
Q Consensus 423 g~I~iwd 429 (432)
+.++||.
T Consensus 379 ~~~KlWS 385 (609)
T KOG4227|consen 379 NSFKLWS 385 (609)
T ss_pred hheeccc
Confidence 9999995
No 165
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.3e-16 Score=158.08 Aligned_cols=270 Identities=19% Similarity=0.290 Sum_probs=190.3
Q ss_pred CCceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecc---cCcEEEEEec--CCCCEEEEEeCCCcEEEEeCC-CC-
Q 014003 152 PKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGH---KKAVSGIALP--LRSDKLYSGSRDGTVQLWDCH-TG- 224 (432)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H---~~~V~~l~~~--~~~~~l~s~s~Dg~v~iWd~~-~~- 224 (432)
+..+-++++.+.+++++..-.|+|||.+.+ +....|..+ ...|+.+.+- .|..+|++|+.||.||||+-- .+
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~-~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKG-RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccC-ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 567888999999999999999999999887 555556544 3679999983 356789999999999999742 21
Q ss_pred ---ceeEEEe-------CCCceeeEE----ECCCEEEEEcCCeEEEEEccCCceEe--ecCCcCCEEEEEEc---CCEEE
Q 014003 225 ---QSASVIN-------LGAEVGSLI----CEGPWVFVGMPNVVKAWHIESSAEFS--LDGPVGEVYSMVVA---NEMLF 285 (432)
Q Consensus 225 ---~~~~~~~-------~~~~~~~~~----~~~~~l~~~~~~~i~vwd~~~~~~~~--~~~~~~~v~~l~~~---~~~l~ 285 (432)
+.+.-.. .......+. ..|.++++|.-..|++||........ ..+....++++..+ .+.++
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 1221111 011112222 25667777788999999998877653 33445566666554 34999
Q ss_pred EEECCCcEEEEECCCCCCCccccceeeeccccC--eEEEEEe--C-CEEEEEeCCCeEEEEECCCCceE--EEecCCC--
Q 014003 286 AGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP--VTCLAVG--G-KRLYSGSMDNTIRVWDLDTLEAV--MTLNGHT-- 356 (432)
Q Consensus 286 ~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~--v~~l~~~--~-~~l~sgs~dg~I~vwd~~~~~~~--~~~~~~~-- 356 (432)
+|..||.|++||.+..... -.+...+.|+.. |..+.+. | ..|++|+.||.|++||++..... .++..|.
T Consensus 1226 AGfaDGsvRvyD~R~a~~d--s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPD--SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred EeecCCceEEeecccCCcc--ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc
Confidence 9999999999999887542 356677788877 8888886 3 35999999999999999984322 2223333
Q ss_pred C-CcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEee-------ccCCcceEEEeeeeCCCCCcEEEEEeCCCeEE
Q 014003 357 D-APMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYT-------HNEDHGVLALGGLNDPDGNPVLICSCNDDSVH 426 (432)
Q Consensus 357 ~-~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~ 426 (432)
+ ..+++..+ ...+|+|+. +.|+||++..... ..+.. ....+ .+..|+|--- ++++|+.|.+|.
T Consensus 1304 Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~----scL~FHP~~~-llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSV----SCLAFHPHRL-LLAAGSADSTVS 1376 (1387)
T ss_pred CccceeeeeccCCCeeeecCc-ceEEEEecChhhh-cccccCcccccCcCCCc----ceeeecchhH-hhhhccCCceEE
Confidence 3 47777777 578888888 9999999965432 22221 11223 3444588766 899999999999
Q ss_pred EeeCC
Q 014003 427 LYELP 431 (432)
Q Consensus 427 iwdl~ 431 (432)
||..+
T Consensus 1377 iYs~~ 1381 (1387)
T KOG1517|consen 1377 IYSCE 1381 (1387)
T ss_pred EeecC
Confidence 99754
No 166
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.76 E-value=9.1e-17 Score=145.94 Aligned_cols=243 Identities=19% Similarity=0.248 Sum_probs=180.5
Q ss_pred EEEEEEecccCcEEEEEecCCC--CEEEEEeCCCcEEEEeCCCCc-----eeEEEeCCCceeeEEE----CCCEEEEEcC
Q 014003 183 TMLAKLEGHKKAVSGIALPLRS--DKLYSGSRDGTVQLWDCHTGQ-----SASVINLGAEVGSLIC----EGPWVFVGMP 251 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~--~~l~s~s~Dg~v~iWd~~~~~-----~~~~~~~~~~~~~~~~----~~~~l~~~~~ 251 (432)
......+-|.+.|++++|+|.. +++++|+.-|+|-+||+.+.+ ...-..+..++.++.+ ...+++++.|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 4455667899999999999865 578999999999999995322 2222235566777764 4568888999
Q ss_pred CeEEEEEccCCce---EeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe-
Q 014003 252 NVVKAWHIESSAE---FSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG- 325 (432)
Q Consensus 252 ~~i~vwd~~~~~~---~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~- 325 (432)
|.|+.-|++.... +........+.++.++.+ .++.+..=|...+||++++... ...+..|...|.+++++
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~----~~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE----YENLRLHKKKITSVALNP 332 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc----chhhhhhhcccceeecCC
Confidence 9999999988753 334444556677777766 6666666669999999998642 44566788899999998
Q ss_pred --CCEEEEEeCCCeEEEEECCCCce----EEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcC----CCCceeEEe
Q 014003 326 --GKRLYSGSMDNTIRVWDLDTLEA----VMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMT----EEGNLEVAY 393 (432)
Q Consensus 326 --~~~l~sgs~dg~I~vwd~~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~----~~~~~~~~~ 393 (432)
..+||+++.|++.+|||++.... +-....|...|.+..|+ +..|++.+.|..|+|||.. ...+...+
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I- 411 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI- 411 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee-
Confidence 77899999999999999986432 23345689999999988 4559999999999999984 33333333
Q ss_pred eccCC--cceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 394 THNED--HGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 394 ~~~~~--~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.|+.. .....+...|.|+.. ++++|-.-..|-|+|-.
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGN 450 (498)
T ss_pred eccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCC
Confidence 34333 234456778899887 89999888888888743
No 167
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=7.3e-17 Score=150.94 Aligned_cols=236 Identities=16% Similarity=0.185 Sum_probs=182.7
Q ss_pred EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE----CCCEEEEEcCCeEEEEE
Q 014003 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC----EGPWVFVGMPNVVKAWH 258 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~i~vwd 258 (432)
.+...+.||++.|.+|+..|.|..|++|+.||+|+||.+.+|.|++++.....+.++.. +..+|+++....+.+.+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 44556889999999999999999999999999999999999999999999999998884 34456666555555554
Q ss_pred ccCCc--------------------------------------eEeecCCcCCEEEEEEcCC--EEEEEECC---CcEEE
Q 014003 259 IESSA--------------------------------------EFSLDGPVGEVYSMVVANE--MLFAGAQD---GNILV 295 (432)
Q Consensus 259 ~~~~~--------------------------------------~~~~~~~~~~v~~l~~~~~--~l~~g~~d---g~i~~ 295 (432)
..-+. +.....+...|..+.|+.. +|++..-+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 32220 0122345667888889866 77776543 46889
Q ss_pred EECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEE
Q 014003 296 WKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLS 371 (432)
Q Consensus 296 wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s 371 (432)
+++..... ...+....+.|.++.|+ ..+|++++ -..|+|||+...++++++......+.+++.+ |+.|+.
T Consensus 551 HQLSK~~s-----Q~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 551 HQLSKRKS-----QSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred Eecccccc-----cCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 99877643 12233345678889998 55666665 4679999999988888888888888888887 799999
Q ss_pred EeCCCcEEEEEcCCC-CceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 372 CSLDNTIKVWIMTEE-GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 372 ~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
++.|+.+..+|+.-. ++.+.+..|...+..+++ ++.-. ++++|+.||++.|+.
T Consensus 625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~----H~ryP-Lfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAF----HKRYP-LFASGSDDGTVIVFH 678 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhh----ccccc-eeeeecCCCcEEEEe
Confidence 999999999999865 455666778888888887 56555 999999999999875
No 168
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.75 E-value=1.1e-16 Score=151.43 Aligned_cols=266 Identities=14% Similarity=0.196 Sum_probs=194.8
Q ss_pred CCCceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEE
Q 014003 151 TPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI 230 (432)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~ 230 (432)
....+|+.|.++.++-+.. ..+.+||.+++ ..+.++++|++.|.+++|+.||++++||+.|+.|.+|+.. -+-+-.+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG-~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDG-TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKY 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCc-ccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeee
Confidence 3457899999996554442 46889999998 7899999999999999999999999999999999999865 3344456
Q ss_pred eCCCceeeEEE--CCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCcc
Q 014003 231 NLGAEVGSLIC--EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPF 306 (432)
Q Consensus 231 ~~~~~~~~~~~--~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~ 306 (432)
.+...+.|+.. -+..++++.-+..-+|..+...... ......+.+++|..| +++.|-.+|+|.+-+-.....
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek--- 166 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK--- 166 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc---
Confidence 67777877774 4456666666677788877655432 234567889999988 999999999999986544322
Q ss_pred ccceeeeccccCeEEEEEe-------CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCc
Q 014003 307 QLAALLKGHTRPVTCLAVG-------GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNT 377 (432)
Q Consensus 307 ~~~~~~~~h~~~v~~l~~~-------~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~ 377 (432)
-.+..-.+.+++|.+++|+ ...+++..-..++..+.+. |+.+..-+.-.-...|+++. |.+++.|+.|+.
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCc
Confidence 1233334577899999996 3467788888888888764 45544333333344566655 899999999999
Q ss_pred EEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 378 IKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 378 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
+++|-- .+-.+...-. ...+.|.+...|+++ .++.|+.||+|-.|++
T Consensus 246 L~~fTR-~GvrLGTvg~----~D~WIWtV~~~PNsQ-~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 246 LSLFTR-DGVRLGTVGE----QDSWIWTVQAKPNSQ-YVVVGCQDGTIACYNL 292 (1081)
T ss_pred eEEEee-cCeEEeeccc----cceeEEEEEEccCCc-eEEEEEccCeeehhhh
Confidence 999943 3333333322 334455555589999 8999999999998876
No 169
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.75 E-value=1e-16 Score=136.06 Aligned_cols=263 Identities=17% Similarity=0.228 Sum_probs=183.2
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEe-cccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCcee--
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLE-GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG-- 237 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~-~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~-- 237 (432)
...+.+|..-|.|++|++.+. .....++ .|...|+.+.--|+ ..|.+-+.|+.+.+|++.-+..+..-....+..
T Consensus 25 ~~rL~sg~~~G~V~~w~lqt~-r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgF 102 (323)
T KOG0322|consen 25 NERLMSGLSVGIVKMWVLQTE-RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGF 102 (323)
T ss_pred chhhhcccccceEEEEEeecC-ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeecccccc
Confidence 336999999999999999887 5566677 67889999998887 668999999999999998765443332111100
Q ss_pred ---eEEECC----CEEEEEcCC--eEEEEEccCCceE-----eecCCcCCEEEEEEcCC-----EEEEEECCCcEEEEEC
Q 014003 238 ---SLICEG----PWVFVGMPN--VVKAWHIESSAEF-----SLDGPVGEVYSMVVANE-----MLFAGAQDGNILVWKG 298 (432)
Q Consensus 238 ---~~~~~~----~~l~~~~~~--~i~vwd~~~~~~~-----~~~~~~~~v~~l~~~~~-----~l~~g~~dg~i~~wd~ 298 (432)
++...+ ..+..-..+ .+.+-|......+ ......+.+.+..+.-+ ++++|-++|.+.+||+
T Consensus 103 CrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~ 182 (323)
T KOG0322|consen 103 CRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDL 182 (323)
T ss_pred ccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEc
Confidence 011111 111111111 1222222222111 12344567777775433 7888999999999999
Q ss_pred CCCCCC-----ccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCC--ce----EEEecCCCCCcEEEEEc
Q 014003 299 IPNTQN-----PFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL--EA----VMTLNGHTDAPMSLLCW 365 (432)
Q Consensus 299 ~~~~~~-----~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~--~~----~~~~~~~~~~v~~~~~~ 365 (432)
.++... ..+.......|..+|.++.++ -+.=++|+.+..+..|++... .+ ..+++.....-..+..+
T Consensus 183 S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD 262 (323)
T KOG0322|consen 183 STGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPD 262 (323)
T ss_pred cCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccC
Confidence 986321 123344556799999999997 444577888888999988642 22 22333223334566667
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 366 DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 366 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
++.+|+++.|+.|+||..++..++..+..|...+..++| +|+.. ++++++.|++|-+|++
T Consensus 263 ~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAf----spd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 263 GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAF----SPDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEe----CCCCc-hhhhccCCceEEeeec
Confidence 899999999999999999999999999999999888888 89877 9999999999999986
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.73 E-value=3.9e-16 Score=136.13 Aligned_cols=235 Identities=17% Similarity=0.199 Sum_probs=166.7
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEeCCCCc--------------eeEEEeCCCceee---------EEECCCEEE-EEc
Q 014003 195 VSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ--------------SASVINLGAEVGS---------LICEGPWVF-VGM 250 (432)
Q Consensus 195 V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~--------------~~~~~~~~~~~~~---------~~~~~~~l~-~~~ 250 (432)
...+.|+|||..|++-+.|..+++|++...- ....+..+..+-. ..++..+++ ++.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4467899999999999999999999985311 1111111222211 112444544 458
Q ss_pred CCeEEEEEccCCceE---eecCCcCC---EEEEEEcCC-EEEEEECCCcEEEEEC-CCCCCCcccc-c-eeeeccccCeE
Q 014003 251 PNVVKAWHIESSAEF---SLDGPVGE---VYSMVVANE-MLFAGAQDGNILVWKG-IPNTQNPFQL-A-ALLKGHTRPVT 320 (432)
Q Consensus 251 ~~~i~vwd~~~~~~~---~~~~~~~~---v~~l~~~~~-~l~~g~~dg~i~~wd~-~~~~~~~~~~-~-~~~~~h~~~v~ 320 (432)
+.-|++||.-+++.. ....|..+ -.++.|+++ .-+.++....|++||+ +.+....... + +.-.+..+-|.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 899999999988754 33344444 358999999 5555677889999999 4443211100 1 11123456778
Q ss_pred EEEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeC-CCcEEEEEcCCCCc-eeEEe
Q 014003 321 CLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL-DNTIKVWIMTEEGN-LEVAY 393 (432)
Q Consensus 321 ~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~-dg~i~iwd~~~~~~-~~~~~ 393 (432)
|++|+ ...++.|+.-.++-|+.-..+.++..+-+|.+.|+.+.|. |+.|.+|+. |-.|..||++..+. +..+.
T Consensus 212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~ 291 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE 291 (406)
T ss_pred eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence 89997 6689999999999999998999999999999999999998 788888875 78899999997653 44454
Q ss_pred eccC-CcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 394 THNE-DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 394 ~~~~-~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.|.. ....+.| ...|+|+ +|++|+.||.|++||++.
T Consensus 292 rhv~~TNQRI~F--Dld~~~~-~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 292 RHVGDTNQRILF--DLDPKGE-ILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hhccCccceEEE--ecCCCCc-eeeccCCCccEEEEecCC
Confidence 5544 2233333 3378999 999999999999999864
No 171
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=7.5e-18 Score=162.84 Aligned_cols=274 Identities=18% Similarity=0.244 Sum_probs=195.0
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.+-||...|.++.|...|+++.+|+.|..++||..++....... .+. ++.. ...+.......+
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-------rGh--s~di--------tdlavs~~n~~i 247 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-------RGH--SGDI--------TDLAVSSNNTMI 247 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-------CCC--cccc--------chhccchhhhhh
Confidence 45899999999999999999999999999999975554331111 111 0111 123333455578
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCC
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (432)
++++.|..|++|.+.++ .++..|+||+++|++|+|+|-. +.+.||++++||.+ -......+ .+
T Consensus 248 aaaS~D~vIrvWrl~~~-~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~p--rp--------- 310 (1113)
T KOG0644|consen 248 AAASNDKVIRVWRLPDG-APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVP--RP--------- 310 (1113)
T ss_pred hhcccCceEEEEecCCC-chHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCC--CC---------
Confidence 89999999999999988 7899999999999999999865 78899999999987 11111000 00
Q ss_pred EEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEE
Q 014003 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (432)
Q Consensus 245 ~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l 322 (432)
... .....+.++.+..+ .+++++.|+.-..|.+..-. .+...+.-+
T Consensus 311 --------------------~~~-~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~-----------~~~~~lif~ 358 (1113)
T KOG0644|consen 311 --------------------LKF-TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA-----------WRSNLLIFV 358 (1113)
T ss_pred --------------------CCc-ccccceeeeeccccccccccccCCcccccchhhHhh-----------hhccceEEE
Confidence 000 11123344444444 78889999888888654321 111111111
Q ss_pred EEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceeEEeecc
Q 014003 323 AVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN 396 (432)
Q Consensus 323 ~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 396 (432)
..+ ..+.+++-.+-.+.+|++.+|..++.+.+|...+..+.++ .....+++.||...|||+-.+.+++.+...
T Consensus 359 t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g- 437 (1113)
T KOG0644|consen 359 TRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG- 437 (1113)
T ss_pred eccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-
Confidence 111 3567777788899999999999999999999998888887 467789999999999999999888777633
Q ss_pred CCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 397 EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 397 ~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
..-.+.+.||+||. -++...+-|.++|..
T Consensus 438 ---h~kl~d~kFSqdgt-s~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 438 ---HGKLVDGKFSQDGT-SIALSDDHGQLYILG 466 (1113)
T ss_pred ---cceeeccccCCCCc-eEecCCCCCceEEec
Confidence 22235566799998 677777778888764
No 172
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.8e-16 Score=135.73 Aligned_cols=234 Identities=16% Similarity=0.180 Sum_probs=167.9
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC-CceeeEE--ECCCEEE-EEcCCeEEEEEccCCceEeecCC
Q 014003 195 VSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG-AEVGSLI--CEGPWVF-VGMPNVVKAWHIESSAEFSLDGP 270 (432)
Q Consensus 195 V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~-~~~~~~~--~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~ 270 (432)
-.++.|++.|.+||.|..||.|.|||+.+....+.+..+ .++.++. .+++.+. ++.|..+.+||+..+........
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 789999999999999999999999999998877777643 4555555 4666655 56899999999999998887888
Q ss_pred cCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCcccccee-eecccc-CeEEEEEe--CCEEEEEeCCCeEEEEEC
Q 014003 271 VGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAAL-LKGHTR-PVTCLAVG--GKRLYSGSMDNTIRVWDL 343 (432)
Q Consensus 271 ~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~-~~~h~~-~v~~l~~~--~~~l~sgs~dg~I~vwd~ 343 (432)
..+|+...|+|. ..++.-.+..-.+.++..... ..+.. -.+..+ .-.+..|+ |+++++|...|.+.++|.
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h---~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH---SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred cCccceeeeccccCCeEEEEEecCCcEEEEecCCce---eeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 899999999986 555555555566666655321 01110 011111 11223455 999999999999999999
Q ss_pred CCCceEEEecCCC-CCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCC------ceeEEeeccCCcceEEE-eeeeCCCCC
Q 014003 344 DTLEAVMTLNGHT-DAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEG------NLEVAYTHNEDHGVLAL-GGLNDPDGN 413 (432)
Q Consensus 344 ~~~~~~~~~~~~~-~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~-~~~~sp~g~ 413 (432)
.+.+++..++-.. ..|..+.+. +++|+.-+.|..|+.|+++.-- .+........-++...| .++||.+|.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge 262 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE 262 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence 9999999988666 667777776 8999999999999999987311 11111111222333333 345688999
Q ss_pred cEEEEEeCCCeEEEeeCC
Q 014003 414 PVLICSCNDDSVHLYELP 431 (432)
Q Consensus 414 ~~l~sg~~Dg~I~iwdl~ 431 (432)
+++++......++||.-.
T Consensus 263 Yv~a~s~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 263 YVCAGSARAHALYIWEKS 280 (405)
T ss_pred EEEeccccceeEEEEecC
Confidence 666666677889999743
No 173
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4.7e-15 Score=124.62 Aligned_cols=279 Identities=14% Similarity=0.186 Sum_probs=189.0
Q ss_pred CCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceee--eecCCCceEEeeccCceeeCCC
Q 014003 92 SPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTL--ERTTPKNVCYHWLSGNCVKGDE 169 (432)
Q Consensus 92 ~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~ 169 (432)
.|.+-+++|.++||+.|..+|+|-+..+.+-.. ....+.+...+. +.+........+....+.+|+.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s-----------~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd 80 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS-----------GSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD 80 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc-----------cccCCCCCcceeeccccCCCeeeeeeehhheeeccC
Confidence 356778999999999999999999986554322 111222333333 2344444444445667777765
Q ss_pred CCeEEEEeCCCCcE-----EEEEE--eccc-----CcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCcee
Q 014003 170 CRFWHSWFCGEGFT-----MLAKL--EGHK-----KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG 237 (432)
Q Consensus 170 d~~i~vw~~~~~~~-----~~~~l--~~H~-----~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~ 237 (432)
|.|+-|......+ .+..+ .-|. -.|+++.+.|..+-++.++.|+.+.-||+++|+..+++
T Consensus 81 -G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~------- 152 (325)
T KOG0649|consen 81 -GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY------- 152 (325)
T ss_pred -ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE-------
Confidence 9999998754322 11111 1232 46889999998888888889999999999999887766
Q ss_pred eEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEc-CC-EEEEEECCCcEEEEECCCCCCCcccccee----
Q 014003 238 SLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVA-NE-MLFAGAQDGNILVWKGIPNTQNPFQLAAL---- 311 (432)
Q Consensus 238 ~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~-~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~---- 311 (432)
.+|..-+.++.-- .+ .+++|++||++++||.++++.. +.+..
T Consensus 153 ------------------------------rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v--~~ie~yk~~ 200 (325)
T KOG0649|consen 153 ------------------------------RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHV--SMIEPYKNP 200 (325)
T ss_pred ------------------------------cCCcceeeeeeecccCcceeecCCCccEEEEecccccee--EEeccccCh
Confidence 5788888888773 33 8999999999999999988642 11111
Q ss_pred --eecc-ccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCc
Q 014003 312 --LKGH-TRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGN 388 (432)
Q Consensus 312 --~~~h-~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 388 (432)
+..| ...|.+++.+..++++|+. ..+.+|.+++.++...|. -.+.+..+.|..+.+++++..+.|.-|.+...
T Consensus 201 ~~lRp~~g~wigala~~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gv-- 276 (325)
T KOG0649|consen 201 NLLRPDWGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVHLVDFVDDCVLIGGEGNHVQSYTLNGV-- 276 (325)
T ss_pred hhcCcccCceeEEEeccCceEEecCC-CceeEEeccCCCceEEEe-cccceeEeeeecceEEEeccccceeeeeeccE--
Confidence 2222 3457888888999988864 569999999999988876 45667888899999999999999999977432
Q ss_pred eeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEe
Q 014003 389 LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLY 428 (432)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iw 428 (432)
+.... ..+...+......-+| -.++..++..+.+.|+
T Consensus 277 l~a~i-p~~s~~c~s~s~~~~p--~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 277 LQANI-PVESTACYSASWQTSP--IKFISIAGFSNKLHIL 313 (325)
T ss_pred EEEec-cCCccceeeecccCCc--eEEEEecccceeeeee
Confidence 11111 1111122222222234 2267777777777775
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.72 E-value=5.7e-14 Score=135.78 Aligned_cols=311 Identities=27% Similarity=0.415 Sum_probs=215.7
Q ss_pred CCCCCCC-CCCce-ecCC-CCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCC--CceEEeeccCceee
Q 014003 92 SPPSYNC-PKNNV-RVSS-GSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLSGNCVK 166 (432)
Q Consensus 92 ~v~~~~~-s~~g~-~las-~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 166 (432)
.+..+.+ ++++. +++. +..|+++++|+..... .....+..+.. ..+++.+....++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~ 172 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG------------------KLIRTLEGHSESVTSLAFSPDGKLLAS 172 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCCC------------------eEEEEEecCcccEEEEEECCCCCEEEe
Confidence 5566666 77777 5555 4449999999866511 00111111111 24566666767777
Q ss_pred CCC-CCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCC-EEEEEeCCCcEEEEeCCCCceeE-EEeCCCce--eeEEE
Q 014003 167 GDE-CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWDCHTGQSAS-VINLGAEV--GSLIC 241 (432)
Q Consensus 167 g~~-d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~-~l~s~s~Dg~v~iWd~~~~~~~~-~~~~~~~~--~~~~~ 241 (432)
++. |+.+++|+.... ..+..+.+|...|.+++|+|++. .+++++.|++|++||...+.... .+...... ..+..
T Consensus 173 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 251 (466)
T COG2319 173 GSSLDGTIKLWDLRTG-KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP 251 (466)
T ss_pred cCCCCCceEEEEcCCC-ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECC
Confidence 775 999999999875 67888889999999999999998 56666999999999998777777 34433332 23445
Q ss_pred CCCEEE-EEcCCeEEEEEccCCce--EeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceee--ec
Q 014003 242 EGPWVF-VGMPNVVKAWHIESSAE--FSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALL--KG 314 (432)
Q Consensus 242 ~~~~l~-~~~~~~i~vwd~~~~~~--~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~--~~ 314 (432)
++.+++ ++.++.+++|+...... .....|...+.++.+.|+ .+++++.|+.+.+||...... .... ..
T Consensus 252 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~~ 326 (466)
T COG2319 252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL-----LSSLTLKG 326 (466)
T ss_pred CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce-----EEEeeecc
Confidence 554554 66899999999987663 333577889999999984 667788889999998877643 2222 36
Q ss_pred cccCeEEEEEe--CCEEEEE-eCCCeEEEEECCCCceEEEecCCCCCcEEEEEcC-CEEE-EEeCCCcEEEEEcCCCCce
Q 014003 315 HTRPVTCLAVG--GKRLYSG-SMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD-QYLL-SCSLDNTIKVWIMTEEGNL 389 (432)
Q Consensus 315 h~~~v~~l~~~--~~~l~sg-s~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~l~-s~s~dg~i~iwd~~~~~~~ 389 (432)
|...+..+.+. +..++.+ ..|+.+.+|+............... +..+.+.. ..+. .+..++.+.+|+.......
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
T COG2319 327 HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL 405 (466)
T ss_pred cCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECCCCCEEEEecCCCceEEEecccCeee
Confidence 77778888884 1455555 6889999999998874344333332 44554443 2233 3789999999999887766
Q ss_pred eEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 390 EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.....+...+.. ..+++++. .+++++.++.+++|+..+
T Consensus 406 ~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 406 RNLDGHTSRVTS----LDFSPDGK-SLASGSSDNTIRLWDLKT 443 (466)
T ss_pred eeccCCCCcEEE----EEECCCCc-EEEEecCCCcEEEEeccC
Confidence 655544322222 33377887 788889999999999763
No 175
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.72 E-value=3.7e-16 Score=136.49 Aligned_cols=241 Identities=17% Similarity=0.283 Sum_probs=171.4
Q ss_pred EecccCcEEEEEecC-----CCCEEEEEeCCCcEEEEeCCCCceeEEEe---CC---CceeeEEE------CCCEEE-EE
Q 014003 188 LEGHKKAVSGIALPL-----RSDKLYSGSRDGTVQLWDCHTGQSASVIN---LG---AEVGSLIC------EGPWVF-VG 249 (432)
Q Consensus 188 l~~H~~~V~~l~~~~-----~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~---~~---~~~~~~~~------~~~~l~-~~ 249 (432)
...|+.+|.+++|++ ..+.++|++. ..+.+|.....--++.++ .. +..-.+.. ...+++ +|
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 357899999999974 3355666665 568889876544333333 22 11111111 244555 55
Q ss_pred cCCeEEEEEccCCceE-eecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe
Q 014003 250 MPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG 325 (432)
Q Consensus 250 ~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 325 (432)
.-|.|++.|+.+++.. .+.+|...|..+.+.|+ ++++++.|.+|++|++++... .-...-+.+|.+.|.++.|+
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C--v~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC--VAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE--EEEecccccccCcEEEEEEc
Confidence 7899999999998865 57799999999999987 899999999999999999754 22333457899999999998
Q ss_pred --CCEEEEEeCCCeEEEEECCCCce------E---------------------E-EecCCCCCcEEEEEcCCEEEEEeCC
Q 014003 326 --GKRLYSGSMDNTIRVWDLDTLEA------V---------------------M-TLNGHTDAPMSLLCWDQYLLSCSLD 375 (432)
Q Consensus 326 --~~~l~sgs~dg~I~vwd~~~~~~------~---------------------~-~~~~~~~~v~~~~~~~~~l~s~s~d 375 (432)
+.++++++.|..|++|++...+. . . +-.-|...|-|+.|.|+++++-|-+
T Consensus 191 ~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSksce 270 (385)
T KOG1034|consen 191 LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCE 270 (385)
T ss_pred CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccC
Confidence 89999999999999999973210 0 0 2234777788888889999999999
Q ss_pred CcEEEEEc-CCCCc---------eeEEeeccC--CcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 376 NTIKVWIM-TEEGN---------LEVAYTHNE--DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 376 g~i~iwd~-~~~~~---------~~~~~~~~~--~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+.|..|.. +-.+. -.....+-. .-....+...++|-++ +|+.|...|.|.+|||+.
T Consensus 271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVWDLDN 338 (385)
T ss_pred ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEEECCC
Confidence 99999977 21111 111111111 1122333445678888 999999999999999963
No 176
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=1.5e-14 Score=128.59 Aligned_cols=233 Identities=18% Similarity=0.218 Sum_probs=174.8
Q ss_pred cCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCce-eEEEeCCCceeeEEECCCEEE-EEc--CCeEEEEEccCCceEee
Q 014003 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS-ASVINLGAEVGSLICEGPWVF-VGM--PNVVKAWHIESSAEFSL 267 (432)
Q Consensus 192 ~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~-~~~~~~~~~~~~~~~~~~~l~-~~~--~~~i~vwd~~~~~~~~~ 267 (432)
...+..+.|+.+...|..|+.|| -+++..+.-.. ......+..+........+++ ++. ...+++++++.+..+-.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEE
Confidence 45566777998999999999998 57787764332 222222223334445555554 443 35699999998888766
Q ss_pred cCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEe--CCCeEEEEEC
Q 014003 268 DGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGS--MDNTIRVWDL 343 (432)
Q Consensus 268 ~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs--~dg~I~vwd~ 343 (432)
.....+|.++..+.+.|++.-++. |++||+++.+. ...+.....+...+.+++++ +.+++--+ ..|.|.|||+
T Consensus 84 ~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~Mkl--LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 84 IFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKL--LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred EecCCceEEEEEccceEEEEEccc-EEEEeccccee--ehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 777889999999999888887766 99999998643 22223333455567777776 45776532 4699999999
Q ss_pred CCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCc-EEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEe
Q 014003 344 DTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNT-IKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC 420 (432)
Q Consensus 344 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~ 420 (432)
.+.+++..+..|.+.+.+++++ |.+||++|..|+ |||+.+.+++.+..+......+.. ...+|+|+++ +|++.+
T Consensus 161 ~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~I--ySL~Fs~ds~-~L~~sS 237 (391)
T KOG2110|consen 161 INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSI--YSLSFSPDSQ-FLAASS 237 (391)
T ss_pred ccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEE--EEEEECCCCC-eEEEec
Confidence 9999999999999999999998 899999999997 799999999998888765544333 3445699999 999999
Q ss_pred CCCeEEEeeCC
Q 014003 421 NDDSVHLYELP 431 (432)
Q Consensus 421 ~Dg~I~iwdl~ 431 (432)
+.++|+||.++
T Consensus 238 ~TeTVHiFKL~ 248 (391)
T KOG2110|consen 238 NTETVHIFKLE 248 (391)
T ss_pred CCCeEEEEEec
Confidence 99999999986
No 177
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.1e-16 Score=160.24 Aligned_cols=239 Identities=20% Similarity=0.295 Sum_probs=179.7
Q ss_pred EEEEEEecccCcEEEEEecCCCCE----EEEEeCCCcEEEEeCCC---Cce---eEE-EeCCCceeeEEE---CCCEEEE
Q 014003 183 TMLAKLEGHKKAVSGIALPLRSDK----LYSGSRDGTVQLWDCHT---GQS---ASV-INLGAEVGSLIC---EGPWVFV 248 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~~~----l~s~s~Dg~v~iWd~~~---~~~---~~~-~~~~~~~~~~~~---~~~~l~~ 248 (432)
+++..+. -....+.|+|.+.+.. ++.|..||.|.+||... +.. +.. -.+.+.+..+.. .+++++.
T Consensus 56 k~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLAS 134 (1049)
T KOG0307|consen 56 KPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLAS 134 (1049)
T ss_pred ccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeec
Confidence 3444443 2567889999887765 89999999999999865 221 122 235566666553 4557776
Q ss_pred E-cCCeEEEEEccCCceE-e--ecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeecccc--Ce
Q 014003 249 G-MPNVVKAWHIESSAEF-S--LDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR--PV 319 (432)
Q Consensus 249 ~-~~~~i~vwd~~~~~~~-~--~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~--~v 319 (432)
| .+|.|.+||+...+.- . .......|.+++|+.. .|++++.+|.+.+||++..+. +..+..+.. .+
T Consensus 135 Ga~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p-----ii~ls~~~~~~~~ 209 (1049)
T KOG0307|consen 135 GADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP-----IIKLSDTPGRMHC 209 (1049)
T ss_pred cCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-----ccccccCCCccce
Confidence 5 7899999999875532 2 2345678999999987 899999999999999998753 333433333 46
Q ss_pred EEEEEe---CCEEEEEeCCC---eEEEEECCC-CceEEEecCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEcCCCCce
Q 014003 320 TCLAVG---GKRLYSGSMDN---TIRVWDLDT-LEAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNL 389 (432)
Q Consensus 320 ~~l~~~---~~~l~sgs~dg---~I~vwd~~~-~~~~~~~~~~~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~ 389 (432)
..++|+ ...+++++.|. .|.+||+|. ..+++.+.+|...|.++.|. ..+|++++.|+.|.+|+.++++.+
T Consensus 210 S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 210 SVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL 289 (1049)
T ss_pred eeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe
Confidence 678887 45566666553 799999886 45688889999999999998 489999999999999999998877
Q ss_pred eEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 390 EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
..+-.. ....+...|.|....++++++-||.|-||.+.
T Consensus 290 ~~~p~~----~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 290 GELPAQ----GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred eecCCC----CcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 776653 33455666678777689999999999999875
No 178
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.2e-16 Score=144.56 Aligned_cols=295 Identities=16% Similarity=0.148 Sum_probs=204.3
Q ss_pred CCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccC-
Q 014003 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG- 162 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 162 (432)
..|.+|.+-|..+.|...|..|+|||.|..+.+|+-.......... .+....+++ .-|.|..+
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~----------SGH~~NvfQ------aKFiP~s~d 199 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE----------SGHCNNVFQ------AKFIPFSGD 199 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc----------cccccchhh------hhccCCCCC
Confidence 3779999999999999999999999999999999744433211110 011112211 11444443
Q ss_pred -ceeeCCCCCeEEEEeCCC-Cc-EEEEEEecccCcEEEEEecCCC-CEEEEEeCCCcEEEEeCCCCceeEEEeCCCceee
Q 014003 163 -NCVKGDECRFWHSWFCGE-GF-TMLAKLEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS 238 (432)
Q Consensus 163 -~~~~g~~d~~i~vw~~~~-~~-~~~~~l~~H~~~V~~l~~~~~~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~ 238 (432)
.+++.+.||.+++=.+.. +. +....+..|.++|..++.-|+. .-|.|++.|+.+.-.|+..+.....+.....
T Consensus 200 ~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~--- 276 (559)
T KOG1334|consen 200 RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREA--- 276 (559)
T ss_pred cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeecc---
Confidence 789999999999988743 32 2245677899999999998865 5699999999999999887765444321000
Q ss_pred EEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCc-ccccee---
Q 014003 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNP-FQLAAL--- 311 (432)
Q Consensus 239 ~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~-~~~~~~--- 311 (432)
+ ....-..++++.+|. .+++|+.|..+++||.+.-.... ..++..
T Consensus 277 ------------~----------------~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p 328 (559)
T KOG1334|consen 277 ------------D----------------EKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCP 328 (559)
T ss_pred ------------C----------------CccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCC
Confidence 0 000124556666665 89999999999999987643210 001111
Q ss_pred ---eeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCC--C----------ceEE-EecCCCC--CcEEEEEcC---CE
Q 014003 312 ---LKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDT--L----------EAVM-TLNGHTD--APMSLLCWD---QY 368 (432)
Q Consensus 312 ---~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~--~----------~~~~-~~~~~~~--~v~~~~~~~---~~ 368 (432)
.....-.|++++|+ +.-|+++..|-.|+++.-.. | ..+. .+++|.. .|..+-|+| .|
T Consensus 329 ~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy 408 (559)
T KOG1334|consen 329 HHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY 408 (559)
T ss_pred ccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce
Confidence 12233468999997 66777777888899995432 2 1223 3788876 478888885 79
Q ss_pred EEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 369 LLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 369 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
+++||.-|.|.||+-.+.+.+..+.+...-+.++ -.+|--. +||+++-|..|+||-.
T Consensus 409 VvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCL----EpHP~~P-vLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 409 VVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCL----EPHPHLP-VLASSGIDHDVKIWTP 465 (559)
T ss_pred EEecCccceEEEEecchhHHHHHhhcccceEecc----CCCCCCc-hhhccCCccceeeecC
Confidence 9999999999999999988887776655433333 3366655 9999999999999964
No 179
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.70 E-value=3.9e-16 Score=132.49 Aligned_cols=275 Identities=16% Similarity=0.158 Sum_probs=176.4
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeec-cCc
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWL-SGN 163 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 163 (432)
.+.+|.+.|+++-|-.+++ |.+|..-|.+++|.+.+... .......... ...-+... ++.
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~----~~~~r~~g~~--------------~it~lq~~p~d~ 69 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERD----LPLIRLFGRL--------------FITNLQSIPNDS 69 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCcc----chhhhhhccc--------------eeeceeecCCcc
Confidence 5678999999999988887 89999999999998766432 0010000000 01111112 257
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCC---------CEEEEEeCCC-cEEEEeCCCCceeEEEeCC
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRS---------DKLYSGSRDG-TVQLWDCHTGQSASVINLG 233 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~---------~~l~s~s~Dg-~v~iWd~~~~~~~~~~~~~ 233 (432)
+.+-+.|..+..|++..+ . ...-|.-.++++.|.+.. +.++.-+... .+.+=|......+......
T Consensus 70 l~tqgRd~~L~lw~ia~s-~---~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~ 145 (323)
T KOG0322|consen 70 LDTQGRDPLLILWTIAYS-A---FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDS 145 (323)
T ss_pred hhhcCCCceEEEEEccCc-c---eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCch
Confidence 888899999999999764 1 123355556666664321 1111111100 0111121111111111111
Q ss_pred -----CceeeEE----ECCC-EEEEE-cCCeEEEEEccCCce-----------EeecCCcCCEEEEEEcCC--EEEEEEC
Q 014003 234 -----AEVGSLI----CEGP-WVFVG-MPNVVKAWHIESSAE-----------FSLDGPVGEVYSMVVANE--MLFAGAQ 289 (432)
Q Consensus 234 -----~~~~~~~----~~~~-~l~~~-~~~~i~vwd~~~~~~-----------~~~~~~~~~v~~l~~~~~--~l~~g~~ 289 (432)
+.+.+.. +... ++++| .+|.+.+||+.++.. .....|..+|.++.+.+. .=++|+.
T Consensus 146 ~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga 225 (323)
T KOG0322|consen 146 ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGA 225 (323)
T ss_pred hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCc
Confidence 1122222 1223 34455 789999999998632 244578889999999865 6678888
Q ss_pred CCcEEEEECCCCCCCccccceeeeccccCeE--EEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc-C
Q 014003 290 DGNILVWKGIPNTQNPFQLAALLKGHTRPVT--CLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-D 366 (432)
Q Consensus 290 dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~-~ 366 (432)
+-.+..|.+...... .+...........|. .|..+++.+|+++-|+.||||+.+++.++..++.|.+.|.+++|+ +
T Consensus 226 ~dkl~~~Sl~~s~gs-lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd 304 (323)
T KOG0322|consen 226 DDKLVMYSLNHSTGS-LQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD 304 (323)
T ss_pred cccceeeeeccccCc-ccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC
Confidence 889999988765321 222222222223333 455579999999999999999999999999999999999999999 3
Q ss_pred -CEEEEEeCCCcEEEEEc
Q 014003 367 -QYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 367 -~~l~s~s~dg~i~iwd~ 383 (432)
+.+|++|.|++|.+|++
T Consensus 305 ~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 305 CELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhccCCceEEeeec
Confidence 79999999999999986
No 180
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.69 E-value=4.9e-15 Score=149.17 Aligned_cols=197 Identities=16% Similarity=0.210 Sum_probs=135.1
Q ss_pred EEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-------eeEEEeCC--CceeeEEE-----CC-CEEEEE
Q 014003 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ-------SASVINLG--AEVGSLIC-----EG-PWVFVG 249 (432)
Q Consensus 185 ~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~-------~~~~~~~~--~~~~~~~~-----~~-~~l~~~ 249 (432)
..++..-...+.++...+.++.+|.++.||.|++.+++... +.+..... +.+..+.. .. .++++.
T Consensus 1091 ~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1091 ELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred eEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEE
Confidence 34444457889999999999999999999999999987621 11222211 22222221 22 244455
Q ss_pred cCCeEEEEEccCCceE---eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceee-eccccCeEEEE
Q 014003 250 MPNVVKAWHIESSAEF---SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALL-KGHTRPVTCLA 323 (432)
Q Consensus 250 ~~~~i~vwd~~~~~~~---~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~-~~h~~~v~~l~ 323 (432)
.-+.+..||++..... ......+.|++++.++. +++.|+..|.+.+||++-+.. +..+ ..+..+++.+.
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~-----i~sw~~P~~~~i~~v~ 1245 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP-----ILSWEHPARAPIRHVW 1245 (1431)
T ss_pred eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce-----eecccCcccCCcceEE
Confidence 7789999999877643 45566789999999987 999999999999999998642 3322 24456777766
Q ss_pred Ee---C--CEEEEEe--CCCeEEEEECCCCceEEEecCCC-C-------------------CcEEEEEc-CCEEEEEeCC
Q 014003 324 VG---G--KRLYSGS--MDNTIRVWDLDTLEAVMTLNGHT-D-------------------APMSLLCW-DQYLLSCSLD 375 (432)
Q Consensus 324 ~~---~--~~l~sgs--~dg~I~vwd~~~~~~~~~~~~~~-~-------------------~v~~~~~~-~~~l~s~s~d 375 (432)
.+ + ...++++ ..+.|.+|++.+|.+..++.... . .+.+.... +.++++|+.|
T Consensus 1246 ~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd 1325 (1431)
T KOG1240|consen 1246 LCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSD 1325 (1431)
T ss_pred eeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCc
Confidence 64 3 4544444 57899999999997766664331 0 11222222 5799999999
Q ss_pred CcEEEEEcCCC
Q 014003 376 NTIKVWIMTEE 386 (432)
Q Consensus 376 g~i~iwd~~~~ 386 (432)
..|+.||....
T Consensus 1326 ~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1326 MKIRKWDPTRP 1336 (1431)
T ss_pred cceeeccCCCc
Confidence 99999997643
No 181
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=3.4e-14 Score=139.05 Aligned_cols=327 Identities=16% Similarity=0.194 Sum_probs=213.2
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.+.+|+. ..++..++.|.+.+-.- +..+.+|+.+.... .. ...... ..+.+. .....+++....+
T Consensus 156 ~~~~~~~-~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~---~~----~~~~~~---~~Htf~---~t~~~~spn~~~~ 220 (792)
T KOG1963|consen 156 FLKEHQE-PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTK---HT----SSRDIT---VHHTFN---ITCVALSPNERYL 220 (792)
T ss_pred hhhhhcC-CccEEEcCCceEEEEEE-eeeEEEEEecccce---ee----ccchhh---hhhccc---ceeEEeccccceE
Confidence 3355555 47778888888766666 56678887655331 00 000000 000000 2467788899999
Q ss_pred eeCCCCCeEEEEeCCC---CcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE-
Q 014003 165 VKGDECRFWHSWFCGE---GFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI- 240 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~---~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~- 240 (432)
++|..||.|.+|.--. .......+.-|...|++++|+++|.+|+||+..|.+.+|.+++++....-..+.++..+.
T Consensus 221 Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~v 300 (792)
T KOG1963|consen 221 AAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVV 300 (792)
T ss_pred EEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEE
Confidence 9999999999997632 234456788899999999999999999999999999999999998544445677777665
Q ss_pred -ECCCEEE-EEcCCeEEEEEccCCceEe------------ecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCC
Q 014003 241 -CEGPWVF-VGMPNVVKAWHIESSAEFS------------LDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQN 304 (432)
Q Consensus 241 -~~~~~l~-~~~~~~i~vwd~~~~~~~~------------~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~ 304 (432)
+++...+ +..|+.|.+....+..... .....+-.+.+.++|. .++-.+..|.|.+||+.+....
T Consensus 301 S~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 301 SPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred cCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 4665554 5589999998775443221 1122344566777774 7888899999999999887542
Q ss_pred ccccceeee------ccccCeEEEEEe--CCEEEEEe--------CC--CeEEEEECCCCce----EEE-ecCCCCCcEE
Q 014003 305 PFQLAALLK------GHTRPVTCLAVG--GKRLYSGS--------MD--NTIRVWDLDTLEA----VMT-LNGHTDAPMS 361 (432)
Q Consensus 305 ~~~~~~~~~------~h~~~v~~l~~~--~~~l~sgs--------~d--g~I~vwd~~~~~~----~~~-~~~~~~~v~~ 361 (432)
..-.+.... .+.-.++.++.+ |++++|.- .| -.++.|-...... ... ...|......
T Consensus 381 ~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~va 460 (792)
T KOG1963|consen 381 YKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVA 460 (792)
T ss_pred eeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEE
Confidence 100111111 122335555544 88888864 23 3577887654333 222 2567777666
Q ss_pred EEEc----CCEEEEEeCCCcEEEEEcCCCCce------eEE----eeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEE
Q 014003 362 LLCW----DQYLLSCSLDNTIKVWIMTEEGNL------EVA----YTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHL 427 (432)
Q Consensus 362 ~~~~----~~~l~s~s~dg~i~iwd~~~~~~~------~~~----~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~i 427 (432)
..+. ....++++.||.++||-+...+.+ ... .-|..++...+| +.||. +++.+.|++|.+
T Consensus 461 t~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~f----s~dGs--lla~s~~~~Iti 534 (792)
T KOG1963|consen 461 TIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCF----SQDGS--LLAVSFDDTITI 534 (792)
T ss_pred EEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhh----cCCCc--EEEEecCCEEEE
Confidence 5555 348999999999999988433221 111 124555555555 89997 445567899999
Q ss_pred eeCCC
Q 014003 428 YELPS 432 (432)
Q Consensus 428 wdl~s 432 (432)
||..+
T Consensus 535 wd~~~ 539 (792)
T KOG1963|consen 535 WDYDT 539 (792)
T ss_pred ecCCC
Confidence 99753
No 182
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=3.4e-13 Score=120.00 Aligned_cols=185 Identities=15% Similarity=0.196 Sum_probs=150.0
Q ss_pred cEEEEEecCCCCEEEEEeCCC--cEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEe----e
Q 014003 194 AVSGIALPLRSDKLYSGSRDG--TVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFS----L 267 (432)
Q Consensus 194 ~V~~l~~~~~~~~l~s~s~Dg--~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~----~ 267 (432)
.|--+-|+ ..++|..+.+. .+++.+.+.+..+..+....++.++.-+.+.+++.....|.|+|+++.+.+. .
T Consensus 48 ~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~ 125 (391)
T KOG2110|consen 48 SIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETT 125 (391)
T ss_pred EEEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhcc
Confidence 34444455 34555555443 4999999999999999999999999999998888888889999999988763 2
Q ss_pred cCCcCCEEEEEEcCC--EEEE--EECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCe-EEE
Q 014003 268 DGPVGEVYSMVVANE--MLFA--GAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNT-IRV 340 (432)
Q Consensus 268 ~~~~~~v~~l~~~~~--~l~~--g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~-I~v 340 (432)
..+...+.++.+++. +++. ....|.|.+||..+- +++..+..|.+++.+++|+ |.+||++|+.|+ |||
T Consensus 126 ~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl-----~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRV 200 (391)
T KOG2110|consen 126 PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL-----QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRV 200 (391)
T ss_pred CCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc-----eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEE
Confidence 244556788888776 6665 345789999999874 4688899999999999997 999999999996 789
Q ss_pred EECCCCceEEEecCCCC--CcEEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 014003 341 WDLDTLEAVMTLNGHTD--APMSLLCW--DQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 341 wd~~~~~~~~~~~~~~~--~v~~~~~~--~~~l~s~s~dg~i~iwd~~~ 385 (432)
+.+.+|+.+.+|..... .|.+++|+ +++|++.|..++|.+|.+.+
T Consensus 201 f~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 201 FSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 99999999999975443 47888888 68999999999999998864
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.67 E-value=5e-13 Score=126.29 Aligned_cols=262 Identities=15% Similarity=0.212 Sum_probs=161.7
Q ss_pred eeeCCCCCeEEEEeCCCC--cEEEEEEecccCcEEEEEecCCCCEEEEEe-CCCcEEEEeCC-CCce--eEEEeCCCcee
Q 014003 164 CVKGDECRFWHSWFCGEG--FTMLAKLEGHKKAVSGIALPLRSDKLYSGS-RDGTVQLWDCH-TGQS--ASVINLGAEVG 237 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~--~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s-~Dg~v~iWd~~-~~~~--~~~~~~~~~~~ 237 (432)
.++...++.|.+|++.+. .+.+..+. +.+....++++|++++|+.++ .++.|.+|+++ +++. ...........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 355577899999999642 23455554 346677899999999987765 47889999997 3432 23333332333
Q ss_pred eE--EECCCEEEEE--cCCeEEEEEccCCc----eEeecCCcCCEEEEEEcCC--EE-EEEECCCcEEEEECCCCCCCcc
Q 014003 238 SL--ICEGPWVFVG--MPNVVKAWHIESSA----EFSLDGPVGEVYSMVVANE--ML-FAGAQDGNILVWKGIPNTQNPF 306 (432)
Q Consensus 238 ~~--~~~~~~l~~~--~~~~i~vwd~~~~~----~~~~~~~~~~v~~l~~~~~--~l-~~g~~dg~i~~wd~~~~~~~~~ 306 (432)
.+ .+++++++++ .++.+.+|++++.. .............+.++|+ ++ ++...++.|.+||+.+......
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 33 3578877766 47899999997432 1221122234566778877 55 4555679999999976321000
Q ss_pred c--cceeeeccccCeEEEEEe--CCEEEEEeC-CCeEEEEECCC--C--ceEEEecCCC------CCcEEEEEc--CCEE
Q 014003 307 Q--LAALLKGHTRPVTCLAVG--GKRLYSGSM-DNTIRVWDLDT--L--EAVMTLNGHT------DAPMSLLCW--DQYL 369 (432)
Q Consensus 307 ~--~~~~~~~h~~~v~~l~~~--~~~l~sgs~-dg~I~vwd~~~--~--~~~~~~~~~~------~~v~~~~~~--~~~l 369 (432)
. ....... ......+.|+ +++++++.. ++.|.+||++. + +.+.++..+. .....+.++ ++++
T Consensus 164 ~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred cCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 0 0011111 2334567776 788888876 89999999973 3 3344443221 112234444 6788
Q ss_pred EEEeC-CCcEEEEEcCCCCceeEEeeccC---CcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 370 LSCSL-DNTIKVWIMTEEGNLEVAYTHNE---DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 370 ~s~s~-dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+++.. ++.|.+|++........+..+.. ....+.+ +|+|+.++++...+++|.+|++.
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~----~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNI----DHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEE----CCCCCEEEEEEccCCcEEEEEEc
Confidence 88754 78999999976543222222211 2233444 89999555556569999999863
No 184
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.66 E-value=8.5e-15 Score=131.45 Aligned_cols=176 Identities=19% Similarity=0.297 Sum_probs=125.4
Q ss_pred CCCCCCCCCCCce-ecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCC
Q 014003 91 KSPPSYNCPKNNV-RVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDE 169 (432)
Q Consensus 91 ~~v~~~~~s~~g~-~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 169 (432)
.+|.++.|.+++. ++|||+.|..||||.++.... . + .
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~---~--------~-------------------------------~ 51 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEP---G--------G-------------------------------G 51 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCC---C--------C-------------------------------C
Confidence 4578889977777 999999999999996544322 0 0 0
Q ss_pred CCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEE
Q 014003 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVG 249 (432)
Q Consensus 170 d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (432)
+.. .+....|..|..+|+++.|+|+|+.|+||+.+|.|.+|....-... .... ..-.....
T Consensus 52 ~~~---------V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~---~~d~--e~~~~ke~----- 112 (434)
T KOG1009|consen 52 DMK---------VEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF---DADT--EADLNKEK----- 112 (434)
T ss_pred cee---------EEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc---cccc--hhhhCccc-----
Confidence 001 1556778899999999999999999999999999999987641110 0000 00000000
Q ss_pred cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--
Q 014003 250 MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-- 325 (432)
Q Consensus 250 ~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-- 325 (432)
|- ......+|...++.++|.++ .+++++.|..+++||+..+. ....+..|...+.-++|+
T Consensus 113 -------w~----v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~-----l~~~~~dh~~yvqgvawDpl 176 (434)
T KOG1009|consen 113 -------WV----VKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ-----LLAILDDHEHYVQGVAWDPL 176 (434)
T ss_pred -------eE----EEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce-----eEeeccccccccceeecchh
Confidence 00 01245678999999999998 89999999999999999975 467777888888888887
Q ss_pred CCEEEEEeCCCeEEEEEC
Q 014003 326 GKRLYSGSMDNTIRVWDL 343 (432)
Q Consensus 326 ~~~l~sgs~dg~I~vwd~ 343 (432)
.+++++-+.|...+++++
T Consensus 177 ~qyv~s~s~dr~~~~~~~ 194 (434)
T KOG1009|consen 177 NQYVASKSSDRHPEGFSA 194 (434)
T ss_pred hhhhhhhccCcccceeee
Confidence 777777777765555554
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.9e-16 Score=147.37 Aligned_cols=220 Identities=23% Similarity=0.301 Sum_probs=156.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeecc
Q 014003 82 QTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (432)
Q Consensus 82 ~~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (432)
|-.++.||+++|.++..++++....|||-||+|+.|++. +.. -|.
T Consensus 336 pi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p-~n~-dp~--------------------------------- 380 (577)
T KOG0642|consen 336 PILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLP-PNQ-DPD--------------------------------- 380 (577)
T ss_pred eeEEEecccCceEEEEecCCceEEEeeccCceeeeeccC-CCC-Ccc---------------------------------
Confidence 444789999999999999999999999999999999766 221 000
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC---Cceee
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG---AEVGS 238 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~---~~~~~ 238 (432)
|..+.......+.||++.|+.+++++....|++++.||+++.|+...... .++... .....
T Consensus 381 ---------------ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 381 ---------------DSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred ---------------cccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 00011123456889999999999999999999999999999999876665 333322 11122
Q ss_pred EEE-CCC--EEEEE-cCCeEEEEEccCCceEeec--------CCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCC
Q 014003 239 LIC-EGP--WVFVG-MPNVVKAWHIESSAEFSLD--------GPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQN 304 (432)
Q Consensus 239 ~~~-~~~--~l~~~-~~~~i~vwd~~~~~~~~~~--------~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~ 304 (432)
+.. ..+ ..+++ .-+.-.+.+++....+... .....+.-+..+++ +.+++..|+.|+++|..++.
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~-- 522 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK-- 522 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc--
Confidence 222 111 11111 2222333344433322211 11234566677776 89999999999999998875
Q ss_pred ccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCC
Q 014003 305 PFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD 357 (432)
Q Consensus 305 ~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~ 357 (432)
++.....|...+++++++ |-+|++++.|+.+++|.+....++.....|..
T Consensus 523 ---~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 523 ---ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred ---cchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccccc
Confidence 578888999999999997 89999999999999999988888877776654
No 186
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.65 E-value=7.6e-15 Score=126.28 Aligned_cols=252 Identities=17% Similarity=0.182 Sum_probs=180.6
Q ss_pred CCCCCCCCCCCCCCCCCCCceecCCCCC-----C---CcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCc
Q 014003 83 TLPVSNHKKSPPSYNCPKNNVRVSSGSE-----E---GTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKN 154 (432)
Q Consensus 83 ~~~~~gh~~~v~~~~~s~~g~~las~~~-----D---g~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (432)
...|.-|.++|+.++-+|-.+.+.+.-. . -.+-||.++.+..... ..++.+.. +.-.....+.
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~-~~tlE~v~--------~Ldteavg~i 126 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN-SSTLECVA--------SLDTEAVGKI 126 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc-cchhhHhh--------cCCHHHhCce
Confidence 3456668899999999877666443221 1 2356898877665311 11110000 0001122234
Q ss_pred eEE--eeccCceeeCCCCCeEEEEeCCCCcEEEEEEe-----cccCcEEEEEecC--CCCEEEEEeCCCcEEEEeCCCCc
Q 014003 155 VCY--HWLSGNCVKGDECRFWHSWFCGEGFTMLAKLE-----GHKKAVSGIALPL--RSDKLYSGSRDGTVQLWDCHTGQ 225 (432)
Q Consensus 155 ~~~--~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~-----~H~~~V~~l~~~~--~~~~l~s~s~Dg~v~iWd~~~~~ 225 (432)
.|. .|+...+++-. |..|.+|+++.+.+.+..+. +|....++-+|+| +++.+++.+ |+++..||+++.+
T Consensus 127 ~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~ 204 (370)
T KOG1007|consen 127 NCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMK 204 (370)
T ss_pred eeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchh
Confidence 444 45555666655 88899999987755454443 4677788899988 677777764 7899999999776
Q ss_pred eeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCC
Q 014003 226 SASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNT 302 (432)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~ 302 (432)
+...+. ..|...|..+.++|+ +|++++.||.|++||.+..+
T Consensus 205 ~~~sI~------------------------------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk 248 (370)
T KOG1007|consen 205 KNNSIE------------------------------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK 248 (370)
T ss_pred hhcchh------------------------------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC
Confidence 554432 567788999999999 89999999999999999875
Q ss_pred CCccccceeeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCC-----------------------------ceEE
Q 014003 303 QNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTL-----------------------------EAVM 350 (432)
Q Consensus 303 ~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~-----------------------------~~~~ 350 (432)
.++..+.+|...|.++.|+ .+++++|+.|..|.+|...+- ..+.
T Consensus 249 ----~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ 324 (370)
T KOG1007|consen 249 ----FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLE 324 (370)
T ss_pred ----ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccc
Confidence 4788999999999999997 889999999999999976321 1245
Q ss_pred EecCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEcCC
Q 014003 351 TLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 351 ~~~~~~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~ 385 (432)
++..|...|.+++|+ +=.+++-|.||.+.|=.+..
T Consensus 325 tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 325 TYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 677899999999999 35788889999998876543
No 187
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4.1e-14 Score=140.62 Aligned_cols=282 Identities=14% Similarity=0.172 Sum_probs=189.1
Q ss_pred CCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEe--eccCce
Q 014003 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYH--WLSGNC 164 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 164 (432)
.|..+....+.|+|=...++++...-.|+|||-+.+......... . ...+.....|+- -....+
T Consensus 1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~------~--------~~~t~Vs~l~liNe~D~aLl 1126 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNG------A--------FPDTRVSDLELINEQDDALL 1126 (1387)
T ss_pred hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCC------C--------CCCCccceeeeecccchhhe
Confidence 344445677888888888999987889999987766542111110 0 111111223322 233478
Q ss_pred eeCCCCCeEEEEeCC----CCcEEEEEEec---cc----CcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC
Q 014003 165 VKGDECRFWHSWFCG----EGFTMLAKLEG---HK----KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~----~~~~~~~~l~~---H~----~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~ 233 (432)
.+|+.||.|+||+-. ...+++....+ +. +.=.-+.|.....+|+++|.-..|+|||.+..++...+..+
T Consensus 1127 Ltas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1127 LTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred eeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC
Confidence 899999999999863 22344444332 11 11133567666667777777899999999999888888765
Q ss_pred Cc--eeeEEE---CCCEEEEE-cCCeEEEEEccCCce----EeecCCcCC--EEEEEEcCC---EEEEEECCCcEEEEEC
Q 014003 234 AE--VGSLIC---EGPWVFVG-MPNVVKAWHIESSAE----FSLDGPVGE--VYSMVVANE---MLFAGAQDGNILVWKG 298 (432)
Q Consensus 234 ~~--~~~~~~---~~~~l~~~-~~~~i~vwd~~~~~~----~~~~~~~~~--v~~l~~~~~---~l~~g~~dg~i~~wd~ 298 (432)
.. +..+.+ .+..+++| .||.|++||.+.... .....|... |..+.+.+. .+++|+.+|.|++||+
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~Dl 1286 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDL 1286 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEec
Confidence 33 334432 56777777 899999999876543 344556655 888888875 7999999999999999
Q ss_pred CCCCCCccccceeeeccc---cCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCC-------CCCcEEEEEcC
Q 014003 299 IPNTQNPFQLAALLKGHT---RPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGH-------TDAPMSLLCWD 366 (432)
Q Consensus 299 ~~~~~~~~~~~~~~~~h~---~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~ 366 (432)
+.... +.......|. +..+++..+ ...+|+|+. +.|+||++. |+.+..++.+ .+.+.++.|+.
T Consensus 1287 R~~~~---e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1287 RMSSK---ETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred ccCcc---cccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc
Confidence 98522 1122222232 248888887 788999988 999999986 4444444322 23578889984
Q ss_pred --CEEEEEeCCCcEEEEEcCCCC
Q 014003 367 --QYLLSCSLDNTIKVWIMTEEG 387 (432)
Q Consensus 367 --~~l~s~s~dg~i~iwd~~~~~ 387 (432)
-.+++|+.|.+|.||.....+
T Consensus 1362 ~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1362 HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhHhhhhccCCceEEEeecCCcC
Confidence 578888999999999876543
No 188
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.64 E-value=2e-14 Score=123.88 Aligned_cols=198 Identities=15% Similarity=0.186 Sum_probs=146.5
Q ss_pred cccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeec
Q 014003 190 GHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLD 268 (432)
Q Consensus 190 ~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~ 268 (432)
.+..++++..|+. +.+++.++|-|-|..|||++++..-.. ..++.
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~v----------------------------------kTQLI 193 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTV----------------------------------KTQLI 193 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccce----------------------------------eeEEE
Confidence 4567999999965 778999999999999999998732100 12456
Q ss_pred CCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe---CCEEEEEeCC-CeEEEE
Q 014003 269 GPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMD-NTIRVW 341 (432)
Q Consensus 269 ~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~d-g~I~vw 341 (432)
.|..+|..++|..+ .+++.+.||++++||++.... -.++.+-.....+...++++ .+++|+-..| ..|.|.
T Consensus 194 AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH--STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 194 AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH--STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL 271 (364)
T ss_pred ecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc--ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence 88999999999875 999999999999999998643 12333333334567788886 6788876655 579999
Q ss_pred ECCC-CceEEEecCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEcCCCCc-----eeEEeeccCCcceEEEeeeeCCCC
Q 014003 342 DLDT-LEAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGN-----LEVAYTHNEDHGVLALGGLNDPDG 412 (432)
Q Consensus 342 d~~~-~~~~~~~~~~~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~sp~g 412 (432)
|++. ..++..+.+|.+.|..++|. ...|++++.|..+.+||+.+.-. ....+....++..+.| +|.-
T Consensus 272 DiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~W----s~~~ 347 (364)
T KOG0290|consen 272 DIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQW----SSSQ 347 (364)
T ss_pred EecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeee----cccC
Confidence 9986 46799999999999999998 58999999999999999976432 2223335566777777 4332
Q ss_pred CcEEEEEeCCCeEEEe
Q 014003 413 NPVLICSCNDDSVHLY 428 (432)
Q Consensus 413 ~~~l~sg~~Dg~I~iw 428 (432)
...++++. ++.+.+.
T Consensus 348 ~Dwiai~~-~kkleiL 362 (364)
T KOG0290|consen 348 PDWIAICF-GKKLEIL 362 (364)
T ss_pred CCEEEEEe-cCeeeEE
Confidence 22666653 4455443
No 189
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.64 E-value=1.4e-14 Score=124.79 Aligned_cols=208 Identities=15% Similarity=0.190 Sum_probs=156.4
Q ss_pred ecccCcEEEEEecCCC-----CEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCc
Q 014003 189 EGHKKAVSGIALPLRS-----DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSA 263 (432)
Q Consensus 189 ~~H~~~V~~l~~~~~~-----~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~ 263 (432)
..|.-+++.+.|.|+. ++|||++ ..+|+|.+...+.....+. .+.+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~-------------------------~L~~~- 144 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQS-------------------------VLNNN- 144 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhh-------------------------hhccC-
Confidence 3689999999998876 3566654 3699999874321111100 00000
Q ss_pred eEeecCCcCCEEEEEEcC---CEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe---CCEEEEEeCCCe
Q 014003 264 EFSLDGPVGEVYSMVVAN---EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNT 337 (432)
Q Consensus 264 ~~~~~~~~~~v~~l~~~~---~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~ 337 (432)
....+..+++++.|+. +++.+.+-|-+..+||+.++.. .....++-+|...|..++|. -+.+|+.+.||.
T Consensus 145 --kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~--~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS 220 (364)
T KOG0290|consen 145 --KNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS--GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS 220 (364)
T ss_pred --cccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc--cceeeEEEecCcceeEEEeccCccceEEEecCCCc
Confidence 1235567889998874 4999999999999999998732 33566778999999999997 478999999999
Q ss_pred EEEEECCCCceEEEec---CCCCCcEEEEEc---CCEEEEEeCCC-cEEEEEcCCCC-ceeEEeeccCCcceEEEeeeeC
Q 014003 338 IRVWDLDTLEAVMTLN---GHTDAPMSLLCW---DQYLLSCSLDN-TIKVWIMTEEG-NLEVAYTHNEDHGVLALGGLND 409 (432)
Q Consensus 338 I~vwd~~~~~~~~~~~---~~~~~v~~~~~~---~~~l~s~s~dg-~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~s 409 (432)
+|+||++..+.-..+. ....+...++++ .+++|+-..|+ .|.|-|++.+. .+..+..|...+..++| .
T Consensus 221 vRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaW----a 296 (364)
T KOG0290|consen 221 VRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAW----A 296 (364)
T ss_pred EEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEe----c
Confidence 9999999876544332 224567788887 47888877765 69999999875 56678889999999998 5
Q ss_pred CCCCcEEEEEeCCCeEEEeeCCC
Q 014003 410 PDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 410 p~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
|.....|+++++|..+.|||+++
T Consensus 297 PhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 297 PHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCCCceeeecCCcceEEEEeccc
Confidence 87777999999999999999864
No 190
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.2e-14 Score=131.35 Aligned_cols=197 Identities=18% Similarity=0.181 Sum_probs=142.4
Q ss_pred CceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC
Q 014003 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (432)
Q Consensus 153 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 232 (432)
..+|+...++.+++|+.||++|||+.... ..+.....|.+.|.+|.|+|||+.|++-+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc-hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 57888888899999999999999997665 5566778899999999999999999999999 899999999965544331
Q ss_pred CCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC------EEE-EEECCCcEEEEECCCCCCCc
Q 014003 233 GAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE------MLF-AGAQDGNILVWKGIPNTQNP 305 (432)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~------~l~-~g~~dg~i~~wd~~~~~~~~ 305 (432)
. ........+.|..+ +++ .....+.|..||+.......
T Consensus 226 ~-----------------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~ 270 (398)
T KOG0771|consen 226 F-----------------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN 270 (398)
T ss_pred c-----------------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc
Confidence 1 11111122222211 222 22334455555554332210
Q ss_pred cccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEe-cCCCCCcEEEEEc--CCEEEEEeCCCcEEE
Q 014003 306 FQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTL-NGHTDAPMSLLCW--DQYLLSCSLDNTIKV 380 (432)
Q Consensus 306 ~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~s~s~dg~i~i 380 (432)
.-...+...-...|++++.+ |++++.|+.||.|.|++..+.+.++-. +.|...|+.+.|+ .+++++.+.|.++.+
T Consensus 271 ~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 271 FLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred ccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 11122222234578899886 999999999999999999988887765 5788899999999 589999999999999
Q ss_pred EEcCCC
Q 014003 381 WIMTEE 386 (432)
Q Consensus 381 wd~~~~ 386 (432)
..+.-.
T Consensus 351 ~~l~vd 356 (398)
T KOG0771|consen 351 TKLAVD 356 (398)
T ss_pred EEEeec
Confidence 877653
No 191
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=1.3e-13 Score=139.01 Aligned_cols=245 Identities=18% Similarity=0.225 Sum_probs=167.0
Q ss_pred EEEEEEecccCcEEEEEecCC-CCEEEEEeCCCcEEEEeCCCC-------ceeEEEe-CCCceeeEE--ECCC-EEEEEc
Q 014003 183 TMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTG-------QSASVIN-LGAEVGSLI--CEGP-WVFVGM 250 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~-~~~l~s~s~Dg~v~iWd~~~~-------~~~~~~~-~~~~~~~~~--~~~~-~l~~~~ 250 (432)
..+..+..|+..|..++.++. +.+|+|||.||+|++||+..- ....++. ....+.++. ..+. +.+++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 778899999999999998654 599999999999999998642 2333333 334444443 3444 455568
Q ss_pred CCeEEEEEccCCc--eE-------eecCCcCCEEEEE-EcC---C-EEEEEECCCcEEEEECCCCCCCccccceeeeccc
Q 014003 251 PNVVKAWHIESSA--EF-------SLDGPVGEVYSMV-VAN---E-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT 316 (432)
Q Consensus 251 ~~~i~vwd~~~~~--~~-------~~~~~~~~v~~l~-~~~---~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~ 316 (432)
||.|.+.+++... .. .-....+.+.+|. +.. . .++.+..-+.|..||++..... + ..+.....
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~-w--~lk~~~~h 1195 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA-W--RLKNQLRH 1195 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH-H--hhhcCccc
Confidence 9999999987621 11 1112334444443 322 2 7888999999999999876431 1 11223345
Q ss_pred cCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEec-CCCCCcEEEEEc---C--CEEEEEe--CCCcEEEEEcCCC
Q 014003 317 RPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN-GHTDAPMSLLCW---D--QYLLSCS--LDNTIKVWIMTEE 386 (432)
Q Consensus 317 ~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~-~~~~~v~~~~~~---~--~~l~s~s--~dg~i~iwd~~~~ 386 (432)
+.|++++.+ ++++++|+..|.+.+||+|=+.++..+. ++..++..+..+ + ...++++ ..+.|.+|++.++
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 789999998 8899999999999999999998888774 345667777665 3 4555444 5788999999988
Q ss_pred CceeEEeeccC--------Cc--------ceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 387 GNLEVAYTHNE--------DH--------GVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 387 ~~~~~~~~~~~--------~~--------~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.....+..... +. ....+++ -++++.++.+|+.|..||.||..+
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~--~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCG--VCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeee--cccCCceeeecCCccceeeccCCC
Confidence 66555544311 00 0111111 245556899999999999999753
No 192
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2.3e-13 Score=133.38 Aligned_cols=325 Identities=16% Similarity=0.153 Sum_probs=207.2
Q ss_pred CCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecC--CCceEEeeccCce
Q 014003 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTT--PKNVCYHWLSGNC 164 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 164 (432)
.-|.-.++++++||+++++|+|..||.|.+|.--+. .+.....+.++=|. .....+...+..+
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~---------------~~~~~t~t~lHWH~~~V~~L~fS~~G~~L 266 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS---------------SDDSETCTLLHWHHDEVNSLSFSSDGAYL 266 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEecccc---------------ccccccceEEEecccccceeEEecCCceE
Confidence 447777899999999999999999999999942211 11112223333332 2345566677799
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCce--------
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV-------- 236 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~-------- 236 (432)
.+|+..+.+-+|.++++. .+-|.--.++|..+.++||+.+.+....|..|.+-...+.....++..-.+.
T Consensus 267 lSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~ 344 (792)
T KOG1963|consen 267 LSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRP 344 (792)
T ss_pred eecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccc
Confidence 999999999999999874 4445666899999999999999999999999999988766555554432222
Q ss_pred ------eeEEE-CCCEEEEEcCCeEEEEEccCCceE------eecCCcC------CEEEEEEcCC--EEEEEE-------
Q 014003 237 ------GSLIC-EGPWVFVGMPNVVKAWHIESSAEF------SLDGPVG------EVYSMVVANE--MLFAGA------- 288 (432)
Q Consensus 237 ------~~~~~-~~~~l~~~~~~~i~vwd~~~~~~~------~~~~~~~------~v~~l~~~~~--~l~~g~------- 288 (432)
.++.+ .+..+..+..+.|.+||+.+...+ ....+.+ .+++++.+-. ++++.-
T Consensus 345 ~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~ 424 (792)
T KOG1963|consen 345 QSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFN 424 (792)
T ss_pred cccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhh
Confidence 12222 345666788999999999876643 1111122 2333333332 555432
Q ss_pred -CC--CcEEEEECCCCCCCccccceeeeccccCeEEEEEe----CCEEEEEeCCCeEEEEECCCC----------ceEEE
Q 014003 289 -QD--GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG----GKRLYSGSMDNTIRVWDLDTL----------EAVMT 351 (432)
Q Consensus 289 -~d--g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~vwd~~~~----------~~~~~ 351 (432)
.| -.+++|-.....+...-.......|...+....+. ...+++++.||.+++|-+... .+...
T Consensus 425 ~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i 504 (792)
T KOG1963|consen 425 FFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI 504 (792)
T ss_pred ccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee
Confidence 23 35778877665543222233345677776666553 448999999999999988322 23222
Q ss_pred ecCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEcCCC-CceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 352 LNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEE-GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 352 ~~~~~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
-..|..++.+++|+ +.-+++++.|++|.+||..+. +..........++....+....-.++ .+.......+.+|+
T Consensus 505 ~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~WN 581 (792)
T KOG1963|consen 505 GSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDG---ALVHATQQRLSVWN 581 (792)
T ss_pred eccccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccccchHhHhhhccccccc---ceeeccCceEehHh
Confidence 23477888888888 457888889999999999884 32222222222222222211111222 22333566788887
Q ss_pred CC
Q 014003 430 LP 431 (432)
Q Consensus 430 l~ 431 (432)
+-
T Consensus 582 ll 583 (792)
T KOG1963|consen 582 LL 583 (792)
T ss_pred hh
Confidence 63
No 193
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.60 E-value=2.6e-14 Score=132.51 Aligned_cols=265 Identities=13% Similarity=0.071 Sum_probs=172.6
Q ss_pred CCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCC
Q 014003 89 HKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGD 168 (432)
Q Consensus 89 h~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 168 (432)
|...|-++.|+.+...+.+++.+-.++-|++........+...... ......+. ...-.---...++-.+
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~-pt~~h~~~---------rs~~~g~~~d~~~i~s 82 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFV-PTDMHLGG---------RSSGGGKGSDTLLICS 82 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccC-Cccccccc---------cccCCCCCcceEEEEc
Confidence 5555678888888877777774444444444433222111111000 00000000 0000001234566778
Q ss_pred CCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEE
Q 014003 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFV 248 (432)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 248 (432)
.||.+.+-+-.. +......+|.++|.+-.|+|+|.-|+|+++||.|++|.-. |-...
T Consensus 83 ~DGkf~il~k~~--rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRS-------------------- 139 (737)
T KOG1524|consen 83 NDGRFVILNKSA--RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRS-------------------- 139 (737)
T ss_pred CCceEEEecccc--hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHH--------------------
Confidence 889988877543 4455678999999999999999999999999999999843 32111
Q ss_pred EcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe
Q 014003 249 GMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG 325 (432)
Q Consensus 249 ~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 325 (432)
.+.....+|+|++|.|+ .+++ ..+.+.+=-+..+. .+-..++|.+-|.++.|+
T Consensus 140 -----------------tl~Q~~~~v~c~~W~p~S~~vl~c--~g~h~~IKpL~~n~-----k~i~WkAHDGiiL~~~W~ 195 (737)
T KOG1524|consen 140 -----------------TVVQNEESIRCARWAPNSNSIVFC--QGGHISIKPLAANS-----KIIRWRAHDGLVLSLSWS 195 (737)
T ss_pred -----------------HHhhcCceeEEEEECCCCCceEEe--cCCeEEEeeccccc-----ceeEEeccCcEEEEeecC
Confidence 12345678999999998 3443 34455555444432 245678999999999998
Q ss_pred --CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEE
Q 014003 326 --GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLA 403 (432)
Q Consensus 326 --~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 403 (432)
.+.+++|++|-..+|||.. |..+.+-..|..+|++++|.++.++..++-++.++= .+.....
T Consensus 196 ~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~---------------~p~~GSi 259 (737)
T KOG1524|consen 196 TQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFS---------------SPRVGSI 259 (737)
T ss_pred ccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccccceeeeeeeeeeec---------------CCCccce
Confidence 8899999999999999965 778888888999999999995444433333444411 1112223
Q ss_pred EeeeeCCCCCcEEEEEeCCCeEEE
Q 014003 404 LGGLNDPDGNPVLICSCNDDSVHL 427 (432)
Q Consensus 404 ~~~~~sp~g~~~l~sg~~Dg~I~i 427 (432)
|...|||||. -+++|+..|.+.+
T Consensus 260 fnlsWS~DGT-Q~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 260 FNLSWSADGT-QATCGTSTGQLIV 282 (737)
T ss_pred EEEEEcCCCc-eeeccccCceEEE
Confidence 5556699999 8999988888754
No 194
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.8e-14 Score=133.86 Aligned_cols=211 Identities=20% Similarity=0.217 Sum_probs=150.4
Q ss_pred EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCC
Q 014003 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESS 262 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~ 262 (432)
...+.|.||++.|.+++|+.+|.+|++||.|-.+.|||.-..+.+..+.
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~------------------------------- 89 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS------------------------------- 89 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-------------------------------
Confidence 4456789999999999999999999999999999999998777666553
Q ss_pred ceEeecCCcCCEEEEEEcCC----EEEEEECCCcEEEEECCCCCCC-----ccccceeeeccccCeEEEEEe---CCEEE
Q 014003 263 AEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQN-----PFQLAALLKGHTRPVTCLAVG---GKRLY 330 (432)
Q Consensus 263 ~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~~wd~~~~~~~-----~~~~~~~~~~h~~~v~~l~~~---~~~l~ 330 (432)
.+|...|.++.|-|. .+++|..|..|+++|+...+.. .......+..|...|..|+.. .+.+.
T Consensus 90 -----TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfw 164 (758)
T KOG1310|consen 90 -----TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFW 164 (758)
T ss_pred -----cccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEE
Confidence 688899999999875 8999999999999999863221 123455667788888888774 58899
Q ss_pred EEeCCCeEEEEECCCCceE-------EEe---cCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEcCCCC----------
Q 014003 331 SGSMDNTIRVWDLDTLEAV-------MTL---NGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEG---------- 387 (432)
Q Consensus 331 sgs~dg~I~vwd~~~~~~~-------~~~---~~~~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~---------- 387 (432)
++++||+|+-+|++....- ..+ ...--...++..+ +.+|+.|+.|-..++||.+...
T Consensus 165 sasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~ 244 (758)
T KOG1310|consen 165 SASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMN 244 (758)
T ss_pred EecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcccc
Confidence 9999999999999863211 111 1111123445555 5899999999999999943110
Q ss_pred --------ceeEEe-eccC--------CcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 388 --------NLEVAY-THNE--------DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 388 --------~~~~~~-~~~~--------~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
++..+. +|.. .+. ......|+|+|..+|++=+.+ .|+++|+.
T Consensus 245 ~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~-~~t~vtfnpNGtElLvs~~gE-hVYlfdvn 303 (758)
T KOG1310|consen 245 TCPPKDCRCVRYFSPGHLKNSQGNLDRYIT-CCTYVTFNPNGTELLVSWGGE-HVYLFDVN 303 (758)
T ss_pred CCCCcccchhheecCccccCccccccccee-eeEEEEECCCCcEEEEeeCCe-EEEEEeec
Confidence 111111 1110 011 123356799999777766544 68888874
No 195
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.59 E-value=1.1e-14 Score=137.26 Aligned_cols=187 Identities=22% Similarity=0.266 Sum_probs=141.5
Q ss_pred CCCEEEE---EcCCeEEEEEccCCceE-----eecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCC--Ccccc
Q 014003 242 EGPWVFV---GMPNVVKAWHIESSAEF-----SLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQ--NPFQL 308 (432)
Q Consensus 242 ~~~~l~~---~~~~~i~vwd~~~~~~~-----~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~--~~~~~ 308 (432)
+...+++ +..|.|-|+++.....+ .-......|+.+.|+|- .|++++.||.|++|.+..+.. ....+
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP 669 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP 669 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc
Confidence 4444443 46789999999875432 22334567899999875 999999999999999876543 22445
Q ss_pred ceeeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEc
Q 014003 309 AALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 309 ~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~ 383 (432)
-..+..|...|+++.|+ .+.|++++.|-+|++||+++++....+.+|.+.|..++|+ |+.+++.+.||+|++|+.
T Consensus 670 e~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 670 EKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP 749 (1012)
T ss_pred ceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence 67788999999999998 7899999999999999999999999999999999999999 899999999999999998
Q ss_pred CCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCC----CeEEEeeCC
Q 014003 384 TEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND----DSVHLYELP 431 (432)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~D----g~I~iwdl~ 431 (432)
+..+.. ++..+..+..-.....|--||+ ++++.+.| ..|.+||.+
T Consensus 750 rs~e~p--v~Eg~gpvgtRgARi~wacdgr-~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 750 RSREQP--VYEGKGPVGTRGARILWACDGR-IVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred CCCCCc--cccCCCCccCcceeEEEEecCc-EEEEecccccchhhhhhhhhh
Confidence 876532 2233333332222333456898 55544444 456777654
No 196
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=9.7e-15 Score=133.14 Aligned_cols=223 Identities=17% Similarity=0.213 Sum_probs=182.3
Q ss_pred CcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--ECCCEEEEEcCCeEEEEEccCCceEeecCC
Q 014003 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVFVGMPNVVKAWHIESSAEFSLDGP 270 (432)
Q Consensus 193 ~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~ 270 (432)
-.-..+.++.+|++|+.|+.-|.|-.+|..+++....+...+.+..+. .+.+++++...+.+.+||-...+ +.....
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE-lHClk~ 208 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE-LHCLKR 208 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcE-Eeehhh
Confidence 344568889999999999999999999999999999998888777665 47788888999999999965444 344445
Q ss_pred cCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCC
Q 014003 271 VGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL 346 (432)
Q Consensus 271 ~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~ 346 (432)
...|..+.|-|. +|++++..|.+.--|+.+++ ++..+....+.+..|.-+ ...+-+|..+|+|.+|...+.
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk-----lVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK-----LVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeechhh-----hhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 567888999988 78889999999999999986 466666667777777777 667889999999999999999
Q ss_pred ceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCe
Q 014003 347 EAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDS 424 (432)
Q Consensus 347 ~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~ 424 (432)
+++..+..|.++|.++++. |+|++|.+.|..++|||++.-..+..+.. ..+...+++ |..| +|+.+ ....
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~----Sqkg--lLA~~-~G~~ 355 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSL----SQKG--LLALS-YGDH 355 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccc----cccc--ceeee-cCCe
Confidence 9999999999999999998 89999999999999999999887766665 344455555 4444 45554 4457
Q ss_pred EEEee
Q 014003 425 VHLYE 429 (432)
Q Consensus 425 I~iwd 429 (432)
|.||.
T Consensus 356 v~iw~ 360 (545)
T KOG1272|consen 356 VQIWK 360 (545)
T ss_pred eeeeh
Confidence 88884
No 197
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=7.8e-14 Score=122.77 Aligned_cols=183 Identities=19% Similarity=0.354 Sum_probs=135.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEE----c
Q 014003 205 DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVV----A 280 (432)
Q Consensus 205 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~----~ 280 (432)
..+|++-..|+|++||..+++.+..++ ++...+..+.| +
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk-------------------------------------~~~~~~N~vrf~~~ds 83 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFK-------------------------------------GPPATTNGVRFISCDS 83 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheec-------------------------------------CCCCcccceEEecCCC
Confidence 567888888999999999888777664 33344444444 3
Q ss_pred CCEEEEEECCCcEEEEECCCCCCCccccceeeeccc-cCeEEEEEe--CCEEEEEeC----CCeEEEEECCCCce-EEEe
Q 014003 281 NEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT-RPVTCLAVG--GKRLYSGSM----DNTIRVWDLDTLEA-VMTL 352 (432)
Q Consensus 281 ~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~-~~v~~l~~~--~~~l~sgs~----dg~I~vwd~~~~~~-~~~~ 352 (432)
++.+.+++.||+|++||++.... .......++. .+..|++.+ ++.+++|+. |-.|.+||+|..+. +..+
T Consensus 84 ~h~v~s~ssDG~Vr~wD~Rs~~e---~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~ 160 (376)
T KOG1188|consen 84 PHGVISCSSDGTVRLWDIRSQAE---SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL 160 (376)
T ss_pred CCeeEEeccCCeEEEEEeecchh---hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh
Confidence 45899999999999999998764 2334445554 567788775 777888764 67899999998776 5554
Q ss_pred -cCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEcCCCCc---eeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeE
Q 014003 353 -NGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGN---LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSV 425 (432)
Q Consensus 353 -~~~~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I 425 (432)
..|...|+++.|. ++.|++||.||.|.+||++.... +.....+...+..+.| ..++-.-+.|-+...+.
T Consensus 161 ~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw----~~~~ykrI~clTH~Etf 236 (376)
T KOG1188|consen 161 NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGW----LSKKYKRIMCLTHMETF 236 (376)
T ss_pred hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeee----ecCCcceEEEEEccCce
Confidence 6799999999998 58999999999999999987633 2222334444444444 45553358888899999
Q ss_pred EEeeCC
Q 014003 426 HLYELP 431 (432)
Q Consensus 426 ~iwdl~ 431 (432)
.+|+++
T Consensus 237 ~~~ele 242 (376)
T KOG1188|consen 237 AIYELE 242 (376)
T ss_pred eEEEcc
Confidence 999986
No 198
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=7.7e-12 Score=109.45 Aligned_cols=219 Identities=14% Similarity=0.233 Sum_probs=159.3
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCc--EEEEEecCCCCEEEE-EeCC------CcEEEEeCCCCceeEEEeCC
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKA--VSGIALPLRSDKLYS-GSRD------GTVQLWDCHTGQSASVINLG 233 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~--V~~l~~~~~~~~l~s-~s~D------g~v~iWd~~~~~~~~~~~~~ 233 (432)
.|.+.+.|.=.+||+.+.- +.....+-+.+. +..+-| ..++|+- |+.+ ..|.|||=....++.++...
T Consensus 18 ScFava~~~Gfriyn~~P~-ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~ 94 (346)
T KOG2111|consen 18 SCFAVATDTGFRIYNCDPF-KESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFN 94 (346)
T ss_pred ceEEEEecCceEEEecCch-hhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecccCcEEEEEEec
Confidence 4555555566899998652 222222222222 222222 2344443 3333 47999998888999999999
Q ss_pred CceeeEEECCCEEEEEcCCeEEEEEccCC-ceE---eecCCcCCEEEEEEcCC--EEEE-EECCCcEEEEECCCCCCCcc
Q 014003 234 AEVGSLICEGPWVFVGMPNVVKAWHIESS-AEF---SLDGPVGEVYSMVVANE--MLFA-GAQDGNILVWKGIPNTQNPF 306 (432)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~i~vwd~~~~-~~~---~~~~~~~~v~~l~~~~~--~l~~-g~~dg~i~~wd~~~~~~~~~ 306 (432)
.++..+......+++-..+.|.+|...+. +.+ ........+.++....+ .|+. |..-|.|++-|+......
T Consensus 95 ~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~-- 172 (346)
T KOG2111|consen 95 SEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN-- 172 (346)
T ss_pred cceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC--
Confidence 99999999999999999999999998744 322 22232333666665555 3333 677899999999876531
Q ss_pred ccceeeeccccCeEEEEEe--CCEEEEEeCCCe-EEEEECCCCceEEEecCCC--CCcEEEEEc--CCEEEEEeCCCcEE
Q 014003 307 QLAALLKGHTRPVTCLAVG--GKRLYSGSMDNT-IRVWDLDTLEAVMTLNGHT--DAPMSLLCW--DQYLLSCSLDNTIK 379 (432)
Q Consensus 307 ~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~-I~vwd~~~~~~~~~~~~~~--~~v~~~~~~--~~~l~s~s~dg~i~ 379 (432)
....+++|...|.|++.+ |..+||+|..|+ |||||.++|+.+..+.... ..+.+++|+ ..+|+++|..|++.
T Consensus 173 -~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlH 251 (346)
T KOG2111|consen 173 -APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLH 251 (346)
T ss_pred -CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEE
Confidence 356788999999999998 999999999996 8999999999999996433 458999998 58999999999999
Q ss_pred EEEcCCCC
Q 014003 380 VWIMTEEG 387 (432)
Q Consensus 380 iwd~~~~~ 387 (432)
||.++...
T Consensus 252 iF~l~~~~ 259 (346)
T KOG2111|consen 252 IFSLRDTE 259 (346)
T ss_pred EEEeecCC
Confidence 99987643
No 199
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=1.1e-11 Score=108.54 Aligned_cols=229 Identities=13% Similarity=0.194 Sum_probs=162.6
Q ss_pred cEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC---CCceeeEEECCCEEE-EE-c------CCeEEEEEccCC
Q 014003 194 AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL---GAEVGSLICEGPWVF-VG-M------PNVVKAWHIESS 262 (432)
Q Consensus 194 ~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~l~-~~-~------~~~i~vwd~~~~ 262 (432)
...+++|+.|...++.|..+| .+||+++--+.....+. +..+..+....++++ +| . .+.+.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345599999998888888777 89999876333222211 111222223344433 33 2 258999997777
Q ss_pred ceEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeecc--ccCeEEEEEe-C-CEEEE-EeCCCe
Q 014003 263 AEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH--TRPVTCLAVG-G-KRLYS-GSMDNT 337 (432)
Q Consensus 263 ~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h--~~~v~~l~~~-~-~~l~s-gs~dg~ 337 (432)
..+.......+|.++.+.++.+++.. .+.|++|...++- +.++.+... .....+++.. + .+||. |-.-|.
T Consensus 86 ~~i~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~----k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNP----KLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cEEEEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCCh----hheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 77777788899999999999887775 4689999988652 233333322 2234444444 3 33443 445699
Q ss_pred EEEEECCCCce--EEEecCCCCCcEEEEEc--CCEEEEEeCCCc-EEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCC
Q 014003 338 IRVWDLDTLEA--VMTLNGHTDAPMSLLCW--DQYLLSCSLDNT-IKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDG 412 (432)
Q Consensus 338 I~vwd~~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g 412 (432)
|+|-|+...+. -..+.+|...|.+++.. |..+||+|..|+ |+|||..+++.+.++...... +-..+..|||++
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~--A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR--ADIYCIAFSPNS 238 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch--heEEEEEeCCCc
Confidence 99999987665 47888999999999988 899999999997 899999999999888754432 223344559999
Q ss_pred CcEEEEEeCCCeEEEeeCC
Q 014003 413 NPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 413 ~~~l~sg~~Dg~I~iwdl~ 431 (432)
. +|+++|+-|+|+||.++
T Consensus 239 s-~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 239 S-WLAVSSDKGTLHIFSLR 256 (346)
T ss_pred c-EEEEEcCCCeEEEEEee
Confidence 9 99999999999999875
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.53 E-value=9.2e-13 Score=128.58 Aligned_cols=227 Identities=15% Similarity=0.112 Sum_probs=156.9
Q ss_pred ceEEeeccC-ceeeCCCCCeEEEEeCCCCcEE-E----EEEecccCcEEEEEecCC--CCEEEEEeCCCcEEEEeCCCCc
Q 014003 154 NVCYHWLSG-NCVKGDECRFWHSWFCGEGFTM-L----AKLEGHKKAVSGIALPLR--SDKLYSGSRDGTVQLWDCHTGQ 225 (432)
Q Consensus 154 ~~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~-~----~~l~~H~~~V~~l~~~~~--~~~l~s~s~Dg~v~iWd~~~~~ 225 (432)
..++.+..+ .++.|..+|.|-+||+..+... . .....|..+|+.+.|..+ +.-+++++.||.|..|+++.-.
T Consensus 247 ~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~ 326 (555)
T KOG1587|consen 247 CLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLS 326 (555)
T ss_pred EEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccc
Confidence 455666555 7888899999999999654321 1 122468999999999543 3559999999999999876433
Q ss_pred eeE------EEe-------CCCceeeEEE----CCCEEEEEcCCeEEEEEcc---CCc------eEeecCCcCCEEEEEE
Q 014003 226 SAS------VIN-------LGAEVGSLIC----EGPWVFVGMPNVVKAWHIE---SSA------EFSLDGPVGEVYSMVV 279 (432)
Q Consensus 226 ~~~------~~~-------~~~~~~~~~~----~~~~l~~~~~~~i~vwd~~---~~~------~~~~~~~~~~v~~l~~ 279 (432)
... ... .......+.. ...+++++..|.|..-+-. ... ......|.+.|+++.+
T Consensus 327 ~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~ 406 (555)
T KOG1587|consen 327 LPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSR 406 (555)
T ss_pred cchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeec
Confidence 211 111 0111222221 3345666677887773332 222 2245678899999998
Q ss_pred cCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCC--CceEEE
Q 014003 280 ANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDT--LEAVMT 351 (432)
Q Consensus 280 ~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~--~~~~~~ 351 (432)
+|- .+++++ |-.+++|...... .++..+..+...+++++|+ ...|+++..||.|.+||+.. ..++.+
T Consensus 407 nPF~~k~fls~g-DW~vriWs~~~~~----~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s 481 (555)
T KOG1587|consen 407 NPFYPKNFLSVG-DWTVRIWSEDVIA----SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLS 481 (555)
T ss_pred CCCccceeeeec-cceeEeccccCCC----CcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccc
Confidence 876 455555 9999999876332 3566777788889999998 66899999999999999865 345666
Q ss_pred ecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 014003 352 LNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 352 ~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~ 385 (432)
...+......+.+. ++.|+.|...|++.+|++..
T Consensus 482 ~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 482 QKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 65554444444444 78999999999999999964
No 201
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.53 E-value=1.9e-11 Score=117.75 Aligned_cols=292 Identities=13% Similarity=0.067 Sum_probs=185.4
Q ss_pred CceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCCCCeEEEEeCCC
Q 014003 101 NNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGE 180 (432)
Q Consensus 101 ~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw~~~~ 180 (432)
.+.++..++.+|.+.-+|..++...+...... ... ... ....+.++.++.++.+..+|..+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~----~~~-------------~~p--~v~~~~v~v~~~~g~l~ald~~t 124 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDE----RLS-------------GGV--GADGGLVFVGTEKGEVIALDAED 124 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCC----Ccc-------------cce--EEcCCEEEEEcCCCEEEEEECCC
Confidence 34566666678888888876666543221110 000 001 11345677788899999999988
Q ss_pred CcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCcee-------eEEECCCEEEEEcCCe
Q 014003 181 GFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG-------SLICEGPWVFVGMPNV 253 (432)
Q Consensus 181 ~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~ 253 (432)
+ +.+...... +.+.+.-.. .+..++.++.||.|..||.++|+.+.......+.. .+..++.+++...++.
T Consensus 125 G-~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~ 201 (377)
T TIGR03300 125 G-KELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGK 201 (377)
T ss_pred C-cEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCE
Confidence 7 444443322 222211111 35577788889999999999999887776544321 1223444444557789
Q ss_pred EEEEEccCCceEeecC---CcC---------CEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEE
Q 014003 254 VKAWHIESSAEFSLDG---PVG---------EVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (432)
Q Consensus 254 i~vwd~~~~~~~~~~~---~~~---------~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 321 (432)
+..+|+++++...... ..+ ...+..+.++.+++++.+|.++.||..+++. +.... ......
T Consensus 202 v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~-----~W~~~--~~~~~~ 274 (377)
T TIGR03300 202 LVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV-----LWKRD--ASSYQG 274 (377)
T ss_pred EEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE-----EEeec--cCCccC
Confidence 9999999887542211 000 0112233456888899999999999988753 22222 112233
Q ss_pred EEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCC-CCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcc
Q 014003 322 LAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT-DAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHG 400 (432)
Q Consensus 322 l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 400 (432)
....+..++.++.||.+..+|..+++.+....... ....+....+..+++++.+|.+.++|..+++.+.....+...+.
T Consensus 275 p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~ 354 (377)
T TIGR03300 275 PAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIA 354 (377)
T ss_pred ceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccc
Confidence 45568889999999999999999999887764322 22333344588999999999999999999988877765543322
Q ss_pred -eEEEeeeeCCCCCcEEEEEeCCCeEEEe
Q 014003 401 -VLALGGLNDPDGNPVLICSCNDDSVHLY 428 (432)
Q Consensus 401 -~~~~~~~~sp~g~~~l~sg~~Dg~I~iw 428 (432)
...+ .+++ |+.++.||.|..|
T Consensus 355 ~sp~~-----~~~~--l~v~~~dG~l~~~ 376 (377)
T TIGR03300 355 SPPVV-----VGDG--LLVQTRDGDLYAF 376 (377)
T ss_pred cCCEE-----ECCE--EEEEeCCceEEEe
Confidence 2222 2444 6678899999876
No 202
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.53 E-value=6.1e-13 Score=119.69 Aligned_cols=280 Identities=17% Similarity=0.144 Sum_probs=174.3
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCc--eEEeeccC
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKN--VCYHWLSG 162 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 162 (432)
.|.+|...|+.+.|+|+|..||||+.+|.+.+|....-... +...+.. .....+..+++...+..+. .|..+...
T Consensus 60 ~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-~~d~e~~--~~ke~w~v~k~lr~h~~diydL~Ws~d~~ 136 (434)
T KOG1009|consen 60 SLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-DADTEAD--LNKEKWVVKKVLRGHRDDIYDLAWSPDSN 136 (434)
T ss_pred cccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-cccchhh--hCccceEEEEEecccccchhhhhccCCCc
Confidence 67899999999999999999999999999999975542211 0000100 0011123334445455554 45555666
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEEC
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICE 242 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~ 242 (432)
.+++|+.|..+++||+..+ +....+.+|...|..++|.|-++++++-+.|...+...+...+.+..............
T Consensus 137 ~l~s~s~dns~~l~Dv~~G-~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~- 214 (434)
T KOG1009|consen 137 FLVSGSVDNSVRLWDVHAG-QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFN- 214 (434)
T ss_pred eeeeeeccceEEEEEeccc-eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccC-
Confidence 8999999999999999998 88999999999999999999999999999999777777765554443331000000000
Q ss_pred CCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEE----CC-----CcEEEEECCCCCCCcccccee
Q 014003 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA----QD-----GNILVWKGIPNTQNPFQLAAL 311 (432)
Q Consensus 243 ~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~----~d-----g~i~~wd~~~~~~~~~~~~~~ 311 (432)
-+.....+++.-++.+. -..-++|+|+ ++++.. .+ +..++|+-..- .++...
T Consensus 215 -----~~e~~s~rLfhDeTlks--------FFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l----~rP~~~ 277 (434)
T KOG1009|consen 215 -----EREGKSTRLFHDETLKS--------FFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL----KRPAAR 277 (434)
T ss_pred -----CCCcceeeeeecCchhh--------hhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccc----cCceee
Confidence 00111222222222211 1122334444 333211 11 22334432221 234444
Q ss_pred eeccccCeEEEEEe--------------------CCEEEEEeCCCeEEEEECCCCceEEEe-cCCCCCcEEEEEc--CCE
Q 014003 312 LKGHTRPVTCLAVG--------------------GKRLYSGSMDNTIRVWDLDTLEAVMTL-NGHTDAPMSLLCW--DQY 368 (432)
Q Consensus 312 ~~~h~~~v~~l~~~--------------------~~~l~sgs~dg~I~vwd~~~~~~~~~~-~~~~~~v~~~~~~--~~~ 368 (432)
+.....+...+.++ .-.+|.++ ...|+|||.++.+++... .-|-..++.++|+ |.+
T Consensus 278 lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~ 356 (434)
T KOG1009|consen 278 LPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSV 356 (434)
T ss_pred cCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcE
Confidence 44444443333321 23455555 457999999998887766 4588889999999 679
Q ss_pred EEEEeCCCcEEEEEcCCCC
Q 014003 369 LLSCSLDNTIKVWIMTEEG 387 (432)
Q Consensus 369 l~s~s~dg~i~iwd~~~~~ 387 (432)
++..|.||...+--++..+
T Consensus 357 l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 357 LLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEEeccCCceEEEEEcchh
Confidence 9999999998877666543
No 203
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.7e-12 Score=116.31 Aligned_cols=243 Identities=14% Similarity=0.137 Sum_probs=166.5
Q ss_pred EEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCC------CceeEEEeCC--CceeeEEE--CCCEEEEE-cCCe
Q 014003 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT------GQSASVINLG--AEVGSLIC--EGPWVFVG-MPNV 253 (432)
Q Consensus 185 ~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~------~~~~~~~~~~--~~~~~~~~--~~~~l~~~-~~~~ 253 (432)
.+.+.+|.+.|.+|.|+.++++|++|+.|..+++|+++. .+.+....++ ..+.++.. .+.+++.| .++.
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 345679999999999999999999999999999999864 3444444433 44556654 45556554 7899
Q ss_pred EEEEEccCCceEeecCCc---CCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe---
Q 014003 254 VKAWHIESSAEFSLDGPV---GEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--- 325 (432)
Q Consensus 254 i~vwd~~~~~~~~~~~~~---~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--- 325 (432)
|..-|+++.+.+....+. +.|+.+..+|. .+++.+.++.|.+||.+..... ..++. .........++.|+
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~-~~~~~-~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP-ISLVL-PANSGKNFYTAEFHPET 206 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC-Cceee-ecCCCccceeeeecCCC
Confidence 999999999877555444 58999999886 9999999999999999876531 12221 22334556677777
Q ss_pred CCEEEEEeCCCeEEEEECCCCce-EEEecC---C---CCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeecc
Q 014003 326 GKRLYSGSMDNTIRVWDLDTLEA-VMTLNG---H---TDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN 396 (432)
Q Consensus 326 ~~~l~sgs~dg~I~vwd~~~~~~-~~~~~~---~---~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 396 (432)
..+|++.+..+-+-+||.+.... +....+ - ...-++..|+ |+.|++--.-..-.+||+....+......|+
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N 286 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN 286 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence 77899999999999999986432 222211 1 1112455555 6777776666667788888766554444444
Q ss_pred CCc--ceE-EEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 397 EDH--GVL-ALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 397 ~~~--~~~-~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
... ..- .-.++|- + .+-+++|+++-.|++|.++
T Consensus 287 ~~GY~N~~T~KS~~F~-~-D~~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFI-D-DYTVATGSDHWGIHIWKLP 322 (609)
T ss_pred CCcceeeeeeeeeeee-c-ceeeeccCcccceEEEecC
Confidence 311 110 1112222 2 2359999999999999986
No 204
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.52 E-value=7.4e-13 Score=116.81 Aligned_cols=243 Identities=21% Similarity=0.259 Sum_probs=174.5
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.++||.+.|+..-.-|...-+.+.++|.++|||--.+.+..+|...+..-+ ......+......+
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~---------------~~~~~~y~~e~~~L 83 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPS---------------PCSAMEYVSESRRL 83 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCC---------------CceEeeeeccceEE
Confidence 569999999998888888889999999999999766666666543331111 11223333344466
Q ss_pred eeCCCCCeEEEEeCCCC---cEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE
Q 014003 165 VKGDECRFWHSWFCGEG---FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~---~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~ 241 (432)
+.|-..|.+.-+.+... ....+.+..|...|..+-|+.....+++.+.|..+.---.+.+..+..+.......+...
T Consensus 84 ~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~ 163 (404)
T KOG1409|consen 84 YVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQF 163 (404)
T ss_pred EEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCce
Confidence 77777777777766432 234556678999999999999999999999998776545566665555544333333332
Q ss_pred CCCEEEEE-cCCeEEEEEccC---CceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeecc
Q 014003 242 EGPWVFVG-MPNVVKAWHIES---SAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH 315 (432)
Q Consensus 242 ~~~~l~~~-~~~~i~vwd~~~---~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h 315 (432)
+-.+...| ..+.+....+.. +......+|.+.+.++.|.+. .+++|..|..+.+||+...+. ....+.+|
T Consensus 164 d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g----~~~el~gh 239 (404)
T KOG1409|consen 164 DALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG----TAYELQGH 239 (404)
T ss_pred eeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc----eeeeeccc
Confidence 22244444 445555544433 335578899999999999988 999999999999999987653 46677899
Q ss_pred ccCeEEEEEe--CCEEEEEeCCCeEEEEECCCC
Q 014003 316 TRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL 346 (432)
Q Consensus 316 ~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~ 346 (432)
.+.|..+..- -+.+.+++.||.|.+||++..
T Consensus 240 ~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 240 NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 9999888764 788999999999999998753
No 205
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=5.2e-12 Score=123.38 Aligned_cols=226 Identities=13% Similarity=0.032 Sum_probs=149.9
Q ss_pred CCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCC---CcEEEEeCCCCceeEEEeCCC--ceeeEEECC
Q 014003 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD---GTVQLWDCHTGQSASVINLGA--EVGSLICEG 243 (432)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~D---g~v~iWd~~~~~~~~~~~~~~--~~~~~~~~~ 243 (432)
.+..|.+||.+... ...+..|...+.+.+|+|+|+.|+.++.+ .+|.+||+.+++......... ....+.+++
T Consensus 182 ~~~~i~i~d~dg~~--~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG 259 (429)
T PRK01742 182 QPYEVRVADYDGFN--QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDG 259 (429)
T ss_pred ceEEEEEECCCCCC--ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCC
Confidence 35789999987653 34567888899999999999999988754 369999999886544333222 223445688
Q ss_pred CEEEEE--cCCeE--EEEEccCCceEeecCCcCCEEEEEEcCC--EEE-EEECCCcEEEEECCCCCCCccccceeeeccc
Q 014003 244 PWVFVG--MPNVV--KAWHIESSAEFSLDGPVGEVYSMVVANE--MLF-AGAQDGNILVWKGIPNTQNPFQLAALLKGHT 316 (432)
Q Consensus 244 ~~l~~~--~~~~i--~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~-~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~ 316 (432)
..++.+ .++.+ .+||+.++....+..+...+.+..|+|+ .++ ++..+|...+|++...... ...+ .+.
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~----~~~l-~~~ 334 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG----ASLV-GGR 334 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----eEEe-cCC
Confidence 876654 46654 4557777777777777777888999998 444 4456788888887554321 1112 232
Q ss_pred cCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcC--CCCceeEE
Q 014003 317 RPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMT--EEGNLEVA 392 (432)
Q Consensus 317 ~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~ 392 (432)
. ....|+ |+.++..+.++ +.+||+.+++.......+...-.+++.++++|+.++.++.+.+|++. +++....+
T Consensus 335 ~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 335 G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence 2 234454 88888887765 55699998876543333322222333348899999999999988863 45566666
Q ss_pred eeccCCcceEEE
Q 014003 393 YTHNEDHGVLAL 404 (432)
Q Consensus 393 ~~~~~~~~~~~~ 404 (432)
..+...+...+|
T Consensus 412 ~~~~g~~~~p~w 423 (429)
T PRK01742 412 PGSDGQVKFPAW 423 (429)
T ss_pred cCCCCCCCCccc
Confidence 666555544444
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.50 E-value=9.3e-13 Score=125.22 Aligned_cols=261 Identities=11% Similarity=0.143 Sum_probs=190.0
Q ss_pred CCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceE--EeeccCceeeCCC
Q 014003 92 SPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVC--YHWLSGNCVKGDE 169 (432)
Q Consensus 92 ~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~ 169 (432)
.|..++|-|||.-|.-+. +..+-|+|.++++...+-+++ .+...| +.-++..+++|+.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgH-------------------KDtVycVAys~dGkrFASG~a 73 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGH-------------------KDTVYCVAYAKDGKRFASGSA 73 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccc-------------------cceEEEEEEccCCceeccCCC
Confidence 789999999999877776 567888988877654333332 223444 4445669999999
Q ss_pred CCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--ECCCEEE
Q 014003 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVF 247 (432)
Q Consensus 170 d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~l~ 247 (432)
|+.|.+|+..-.. +.. ..|.+.|.|+.|+|-.+.|+|++.. ..-+|..+..... .......+.+.. .+|.+++
T Consensus 74 DK~VI~W~~klEG--~Lk-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~kss~R~~~CsWtnDGqyla 148 (1081)
T KOG1538|consen 74 DKSVIIWTSKLEG--ILK-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KHKSSSRIICCSWTNDGQYLA 148 (1081)
T ss_pred ceeEEEecccccc--eee-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hhhhheeEEEeeecCCCcEEE
Confidence 9999999974321 222 2699999999999999999999875 4678887643322 222333444444 4888888
Q ss_pred EE-cCCeEEEEEccCCceEe---ecCCcCCEEEEEEcCC-------EEEEEECCCcEEEEECCCCCCCccccceeeeccc
Q 014003 248 VG-MPNVVKAWHIESSAEFS---LDGPVGEVYSMVVANE-------MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT 316 (432)
Q Consensus 248 ~~-~~~~i~vwd~~~~~~~~---~~~~~~~v~~l~~~~~-------~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~ 316 (432)
.| .+|+|.+-+-....... ..+...+|.+++++|+ .+++.....++.+|.+.... +..-+.-.
T Consensus 149 lG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~------Igk~r~L~ 222 (1081)
T KOG1538|consen 149 LGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ------IGKDRALN 222 (1081)
T ss_pred EeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee------ecccccCC
Confidence 87 88999888655444433 3457889999999875 78899999999999876542 11111122
Q ss_pred cCeEEEEE--eCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 014003 317 RPVTCLAV--GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMT 384 (432)
Q Consensus 317 ~~v~~l~~--~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~ 384 (432)
-.-.|+.+ +|.+++.|+.|+.+++|- +.|-.+.++......|.++... +++++.|+.||+|-.|++-
T Consensus 223 FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 223 FDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 23346655 599999999999999997 5577778887777788888776 7999999999999999864
No 207
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.49 E-value=4e-14 Score=137.47 Aligned_cols=229 Identities=18% Similarity=0.334 Sum_probs=173.8
Q ss_pred cCCCceEE--eeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee
Q 014003 150 TTPKNVCY--HWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSA 227 (432)
Q Consensus 150 ~~~~~~~~--~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~ 227 (432)
|.....|. ...+..+++|+.|..++||..++. .++..+.||++.|+.++.+.+..+++++|.|..|++|.+..+..+
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv 267 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV 267 (1113)
T ss_pred hhhheeeeeeccccceEeecCccceeeeeeccch-hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchH
Confidence 43334454 444558999999999999998887 778899999999999999999999999999999999999988876
Q ss_pred EEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccc
Q 014003 228 SVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQ 307 (432)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~ 307 (432)
..+ .+|.+.|++++|+|-. +.+.||++++||.+-... ..
T Consensus 268 svL-------------------------------------rghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~--~y 306 (1113)
T KOG0644|consen 268 SVL-------------------------------------RGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPR--IY 306 (1113)
T ss_pred HHH-------------------------------------hccccceeeeccCccc--cCCCCCceEecccccccc--cc
Confidence 554 6899999999999965 788999999999882211 00
Q ss_pred cceeee-ccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEE---EcCCEEEEEeCCCcEEEE
Q 014003 308 LAALLK-GHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLL---CWDQYLLSCSLDNTIKVW 381 (432)
Q Consensus 308 ~~~~~~-~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~---~~~~~l~s~s~dg~i~iw 381 (432)
+....+ .....+.++.+. +..+++++.|+.-..|.+..... +.....-+. -.+.+.+++-.+-.+.+|
T Consensus 307 ~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vw 380 (1113)
T KOG0644|consen 307 VPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVW 380 (1113)
T ss_pred CCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeee
Confidence 111111 122445555554 78899999999998887653222 111111111 113567777788899999
Q ss_pred EcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 382 IMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 382 d~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
++.++.......+|.....++.+ +|-+..+..+++.||..-|||+
T Consensus 381 nl~~g~l~H~l~ghsd~~yvLd~----Hpfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 381 NLYTGQLLHNLMGHSDEVYVLDV----HPFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred ecccchhhhhhcccccceeeeee----cCCCcHhhhhccCCCceEeeec
Confidence 99999888888889888877777 7877778899999999999996
No 208
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.47 E-value=1.1e-10 Score=110.24 Aligned_cols=230 Identities=12% Similarity=0.099 Sum_probs=141.2
Q ss_pred CceEEeeccCce-eeCCCCCeEEEEeCCC-C-cEEEEEEecccCcEEEEEecCCCCEEEEEeC-CCcEEEEeCCCC-c--
Q 014003 153 KNVCYHWLSGNC-VKGDECRFWHSWFCGE-G-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSR-DGTVQLWDCHTG-Q-- 225 (432)
Q Consensus 153 ~~~~~~~~~~~~-~~g~~d~~i~vw~~~~-~-~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~-Dg~v~iWd~~~~-~-- 225 (432)
..+.+.+....+ +++..++.|.+|+++. + ...+.... ..+....++|+|++++|++++. ++.|.+|++++. .
T Consensus 38 ~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~ 116 (330)
T PRK11028 38 QPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV 116 (330)
T ss_pred ccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC
Confidence 355666666655 3445688999999963 2 22233322 3345678999999999988875 889999999742 2
Q ss_pred -eeEEEeCCCce--eeEEECCCEEEEE--cCCeEEEEEccCCceEe-------ecCCcCCEEEEEEcCC--EEEEEEC-C
Q 014003 226 -SASVINLGAEV--GSLICEGPWVFVG--MPNVVKAWHIESSAEFS-------LDGPVGEVYSMVVANE--MLFAGAQ-D 290 (432)
Q Consensus 226 -~~~~~~~~~~~--~~~~~~~~~l~~~--~~~~i~vwd~~~~~~~~-------~~~~~~~v~~l~~~~~--~l~~g~~-d 290 (432)
....+...... ..+.++++++++. .++.|.+||+.+...+. ..........+.++++ +++++.. +
T Consensus 117 ~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~ 196 (330)
T PRK11028 117 APIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN 196 (330)
T ss_pred CceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC
Confidence 22322222222 2344677777654 57899999997643221 1112234567888888 6766665 8
Q ss_pred CcEEEEECCCCCCCccccceeeeccc------cCeEEEEEe--CCEEEEEeC-CCeEEEEECCCCc----eEEEecCCCC
Q 014003 291 GNILVWKGIPNTQNPFQLAALLKGHT------RPVTCLAVG--GKRLYSGSM-DNTIRVWDLDTLE----AVMTLNGHTD 357 (432)
Q Consensus 291 g~i~~wd~~~~~~~~~~~~~~~~~h~------~~v~~l~~~--~~~l~sgs~-dg~I~vwd~~~~~----~~~~~~~~~~ 357 (432)
++|.+||+...... .+....+..+. .....+.++ +++++++.. ++.|.+|+++... .+...... .
T Consensus 197 ~~v~v~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~ 274 (330)
T PRK11028 197 SSVDVWQLKDPHGE-IECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-T 274 (330)
T ss_pred CEEEEEEEeCCCCC-EEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-c
Confidence 99999999743211 22333332211 112245555 888888854 7899999986533 22222211 1
Q ss_pred CcEEEEEc--CCEEEEEeC-CCcEEEEEcCC
Q 014003 358 APMSLLCW--DQYLLSCSL-DNTIKVWIMTE 385 (432)
Q Consensus 358 ~v~~~~~~--~~~l~s~s~-dg~i~iwd~~~ 385 (432)
....+.++ +++|+++.. +++|.+|+++.
T Consensus 275 ~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 275 QPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred cCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 23345554 788887765 89999998864
No 209
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=8.2e-12 Score=112.06 Aligned_cols=258 Identities=13% Similarity=0.149 Sum_probs=169.5
Q ss_pred CCCCCCCCCCCce--ecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCC
Q 014003 91 KSPPSYNCPKNNV--RVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGD 168 (432)
Q Consensus 91 ~~v~~~~~s~~g~--~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 168 (432)
..|.+++|-.+++ .+..-+.|..+......++...........++.+. ....-.......++++-
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~-------------~~I~gl~~~dg~Litc~ 122 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGT-------------KSIKGLKLADGTLITCV 122 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCcccccccccccccccc-------------ccccchhhcCCEEEEEe
Confidence 4567777754433 34444456666655555544321110000011111 11223334566788889
Q ss_pred CCCeEEEEeCCCCc---EEEEEEecccCcEEEEEecCCCC-EEEEEeCC--CcEEEEeCCCCceeEEEeCCCceeeEEEC
Q 014003 169 ECRFWHSWFCGEGF---TMLAKLEGHKKAVSGIALPLRSD-KLYSGSRD--GTVQLWDCHTGQSASVINLGAEVGSLICE 242 (432)
Q Consensus 169 ~d~~i~vw~~~~~~---~~~~~l~~H~~~V~~l~~~~~~~-~l~s~s~D--g~v~iWd~~~~~~~~~~~~~~~~~~~~~~ 242 (432)
.+|.+++|....+. .+...+..| ..+..+.-++... .+++|+.. ..+++||++..+.+..-+ ......
T Consensus 123 ~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK--NvpnD~--- 196 (412)
T KOG3881|consen 123 SSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK--NVPNDR--- 196 (412)
T ss_pred cCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeecc--CCCCcc---
Confidence 99999999987331 334444443 4566666655444 45668888 889999998774332221 110000
Q ss_pred CCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC----EEEEEECCCcEEEEECCCCCCCccccceeeeccccC
Q 014003 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (432)
Q Consensus 243 ~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~ 318 (432)
.+=.|.+|+ +++.|-+. .+++++.-+.+++||.+.+ .+++..+.--..+
T Consensus 197 -------L~LrVPvW~----------------tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q----RRPV~~fd~~E~~ 249 (412)
T KOG3881|consen 197 -------LGLRVPVWI----------------TDIRFLEGSPNYKFATITRYHQVRLYDTRHQ----RRPVAQFDFLENP 249 (412)
T ss_pred -------ccceeeeee----------------ccceecCCCCCceEEEEecceeEEEecCccc----CcceeEeccccCc
Confidence 001222232 34444332 8999999999999999976 3578888777888
Q ss_pred eEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEE-ecCCCCCcEEEEEcC--CEEEEEeCCCcEEEEEcCCCCceeEEe
Q 014003 319 VTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMT-LNGHTDAPMSLLCWD--QYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 319 v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~-~~~~~~~v~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (432)
++++... ++.+++|..-|.+..||++.++.... +.+-.+.+.++.+++ +++++++.|..++|+|+++.+.+...+
T Consensus 250 is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 250 ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred ceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence 8887764 99999999999999999999999877 899999999999994 699999999999999999976655544
Q ss_pred e
Q 014003 394 T 394 (432)
Q Consensus 394 ~ 394 (432)
-
T Consensus 330 v 330 (412)
T KOG3881|consen 330 V 330 (412)
T ss_pred h
Confidence 3
No 210
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=2.3e-11 Score=114.17 Aligned_cols=235 Identities=17% Similarity=0.251 Sum_probs=162.7
Q ss_pred cccCcEEEEEecCCCCEE-EEEeCCCcEEEEeCCCCceeEEEeCCCceeeE-----------------------------
Q 014003 190 GHKKAVSGIALPLRSDKL-YSGSRDGTVQLWDCHTGQSASVINLGAEVGSL----------------------------- 239 (432)
Q Consensus 190 ~H~~~V~~l~~~~~~~~l-~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~----------------------------- 239 (432)
+|...-+.|..+|||+|+ +||..--.|++||+..-.....-.....+..+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 577888999999999985 56667889999999754322111111111100
Q ss_pred --------------EECCCEEEEEcCCeEEEEEccCCceEee-cCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCC
Q 014003 240 --------------ICEGPWVFVGMPNVVKAWHIESSAEFSL-DGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNT 302 (432)
Q Consensus 240 --------------~~~~~~l~~~~~~~i~vwd~~~~~~~~~-~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~ 302 (432)
.+...+++++....|+-++++.+.-+.. ....+.++++.+++- +|++|+.+|.|..||.+...
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 0134567788888999999999987644 344478888888876 89999999999999998865
Q ss_pred CCc-cccceeeecccc-----CeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEec-CCCCCcEEEEEc----CCEE
Q 014003 303 QNP-FQLAALLKGHTR-----PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN-GHTDAPMSLLCW----DQYL 369 (432)
Q Consensus 303 ~~~-~~~~~~~~~h~~-----~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~-~~~~~v~~~~~~----~~~l 369 (432)
... .........|.. .|+++.|+ |-.+++|+.+|.+.|||+++.+++..-. +..-+|..+.|. .+.+
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v 288 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKV 288 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceE
Confidence 310 111111222332 48999996 7789999999999999999998876553 233467777775 2344
Q ss_pred EEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 370 LSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 370 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
++. ....++|||-.+++....+.... .+..+++ -|++. +++++-+++.+..|=++
T Consensus 289 ~S~-Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~----~p~sG-m~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 289 VSM-DKRILKIWDECTGKPMASIEPTS-DLNDFCF----VPGSG-MFFTANESSKMHTYYIP 343 (703)
T ss_pred Eec-chHHhhhcccccCCceeeccccC-CcCceee----ecCCc-eEEEecCCCcceeEEcc
Confidence 443 45679999999988776554333 3455554 47777 88888888888776554
No 211
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=2.1e-12 Score=120.40 Aligned_cols=233 Identities=15% Similarity=0.174 Sum_probs=150.3
Q ss_pred CccccccCCCCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCC
Q 014003 74 CRFAHTESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK 153 (432)
Q Consensus 74 ~~~l~~~~~~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (432)
..++...-...+|.||++-|++++|+.||.+|+|||.|--+.|||
T Consensus 34 s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd----------------------------------- 78 (758)
T KOG1310|consen 34 STWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWD----------------------------------- 78 (758)
T ss_pred cHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeec-----------------------------------
Confidence 345555556779999999999999999999999999888777774
Q ss_pred ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEE-ecccCcEEEEEecC--CCCEEEEEeCCCcEEEEeCCCCceeEEE
Q 014003 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKL-EGHKKAVSGIALPL--RSDKLYSGSRDGTVQLWDCHTGQSASVI 230 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l-~~H~~~V~~l~~~~--~~~~l~s~s~Dg~v~iWd~~~~~~~~~~ 230 (432)
.-.. +++..+ .||...|.++.|-| +.+.++||+.|..|+++|+...+.-..-
T Consensus 79 ------------------------~~~~-KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d 133 (758)
T KOG1310|consen 79 ------------------------PFEY-KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMD 133 (758)
T ss_pred ------------------------chhc-ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccc
Confidence 2111 333333 58999999999976 5678999999999999999753321100
Q ss_pred eCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCcc-
Q 014003 231 NLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPF- 306 (432)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~- 306 (432)
++.. ..+ .....|...|..++..|+ .+.++++||+|+-+|++.......
T Consensus 134 -~~~~----------------~~~----------~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~ 186 (758)
T KOG1310|consen 134 -HGME----------------ETT----------RCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD 186 (758)
T ss_pred -cCcc----------------chh----------hhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc
Confidence 0000 000 112456666767776655 899999999999999998532100
Q ss_pred ----ccceeeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCC--------c----------eEEEe-cCCC----
Q 014003 307 ----QLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTL--------E----------AVMTL-NGHT---- 356 (432)
Q Consensus 307 ----~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~--------~----------~~~~~-~~~~---- 356 (432)
.....+...--...|+.++ ..+|++|+.|-..++||.+.. + ++..+ .+|.
T Consensus 187 ~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~ 266 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQ 266 (758)
T ss_pred ccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcc
Confidence 0111111222344577776 789999999999999995421 1 22222 1222
Q ss_pred ----CCc---EEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEe
Q 014003 357 ----DAP---MSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 357 ----~~v---~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (432)
..+ +-+.|+ |.-|+..-....|+++|+...+.+..+.
T Consensus 267 gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 267 GNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred cccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 113 233444 3344444444579999998877655443
No 212
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=9.8e-12 Score=116.58 Aligned_cols=267 Identities=15% Similarity=0.201 Sum_probs=179.8
Q ss_pred CCCCCCCCCCCCCcee-cCCCCCCCcccccccCCCCCCCC-C--CcccccCCCCCCC------------------CC-ce
Q 014003 89 HKKSPPSYNCPKNNVR-VSSGSEEGTTHVQNRENPDRTVP-N--KSSLDCSTGSDDS------------------GS-KR 145 (432)
Q Consensus 89 h~~~v~~~~~s~~g~~-las~~~Dg~i~iW~~~~~~~~~~-~--~~~~~~~~~~~~~------------------~~-~~ 145 (432)
|...-+.+.++|||+| +|+|-+.-.|+++++..-..-.. . ........-++.. |. .+
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 4445589999999999 78899999999998876432100 0 0000000000000 00 01
Q ss_pred eeeecCCCceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 014003 146 TLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ 225 (432)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~ 225 (432)
+-....+..+|++...-.+..++....|.-.+++.+ ..+..|....+.++++..++-..+|++|+.||.|..||.+...
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG-RFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eecCcCCccccccCCCccEEEeecCcceEEEEcccc-ccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 111122335555555555555555566777888887 6777788788999999999999999999999999999999887
Q ss_pred eeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCC
Q 014003 226 SASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQ 303 (432)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~ 303 (432)
.+..+.....+.+. ........|+++.|..+ .+++|+.+|.+.+||++..+.
T Consensus 209 rv~~l~~~~~v~s~--------------------------pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 209 RVGTLDAASSVNSH--------------------------PGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred hheeeecccccCCC--------------------------ccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence 77766543332111 01223446999999997 899999999999999999763
Q ss_pred CccccceeeeccccCeEEEEEe----CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCc
Q 014003 304 NPFQLAALLKGHTRPVTCLAVG----GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNT 377 (432)
Q Consensus 304 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~ 377 (432)
++..-.+...+|..+.|. ++.+++ .....++|||-.+|+....+..... +..+++. +.+++++-.++.
T Consensus 263 ----l~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~~-lND~C~~p~sGm~f~Ane~~~ 336 (703)
T KOG2321|consen 263 ----LLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTSD-LNDFCFVPGSGMFFTANESSK 336 (703)
T ss_pred ----eeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccCC-cCceeeecCCceEEEecCCCc
Confidence 333333445678888884 344554 4467899999999999988875443 5444443 678999998888
Q ss_pred EEEEEcCCCCc
Q 014003 378 IKVWIMTEEGN 388 (432)
Q Consensus 378 i~iwd~~~~~~ 388 (432)
+..|=+..-.+
T Consensus 337 m~~yyiP~LGP 347 (703)
T KOG2321|consen 337 MHTYYIPSLGP 347 (703)
T ss_pred ceeEEccccCC
Confidence 88876655443
No 213
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=2.9e-12 Score=117.88 Aligned_cols=243 Identities=17% Similarity=0.198 Sum_probs=171.7
Q ss_pred EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceee----EE---ECCCEEEEEcCCeEE
Q 014003 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS----LI---CEGPWVFVGMPNVVK 255 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~----~~---~~~~~l~~~~~~~i~ 255 (432)
.....|..|.+.|..+.|+..|..|+|||.|..|.+||..+++....+..+....- +. .+..++..+.||.++
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 44566889999999999999999999999999999999998887777664322211 11 245566677999999
Q ss_pred EEEccCCce----EeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeecccc---CeEEEEEe
Q 014003 256 AWHIESSAE----FSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR---PVTCLAVG 325 (432)
Q Consensus 256 vwd~~~~~~----~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~---~v~~l~~~ 325 (432)
+=.+..... ..+..|.+.|..++..|+ .+.+++.|+.+.-+|++.+... .....-..+.. ....++.+
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa--~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPA--EKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcc--ceeeeeccCCccceeeeeEecC
Confidence 876654332 356788899999998877 8999999999999999987542 11222233333 34566665
Q ss_pred ---CCEEEEEeCCCeEEEEECCCCce------EEEecCC------CCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCC--
Q 014003 326 ---GKRLYSGSMDNTIRVWDLDTLEA------VMTLNGH------TDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEE-- 386 (432)
Q Consensus 326 ---~~~l~sgs~dg~I~vwd~~~~~~------~~~~~~~------~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~-- 386 (432)
.+.+++|+.|..+++||.+.-.. +.++..| ...|+++.++ +.-|+++-.|-.|+++.-..+
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 56899999999999999875322 2333322 2358999998 455666666778999943321
Q ss_pred ----------CceeE-EeeccCC--cceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 387 ----------GNLEV-AYTHNED--HGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 387 ----------~~~~~-~~~~~~~--~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
..+.. +.+|... +..+.| |-|..+ ++++|++=|.|.||+=.
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNF---fGPrsE-yVvSGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNF---FGPRSE-YVVSGSDCGHIFIWDKK 424 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeee---ccCccc-eEEecCccceEEEEecc
Confidence 11122 4455443 333333 578888 99999999999999854
No 214
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.41 E-value=3.8e-10 Score=107.10 Aligned_cols=259 Identities=17% Similarity=0.188 Sum_probs=163.5
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--E
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--C 241 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~ 241 (432)
+++-..++.|.+.|..+. +.+.++......-..+.|+|||+++++++.||.|.++|+.+++.+.++..+.....+. .
T Consensus 9 ~V~~~~~~~v~viD~~t~-~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATN-KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred EEEecCCCEEEEEECCCC-eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence 355667799999999886 7778887655544557899999999999999999999999999999999887766555 6
Q ss_pred CCCEEEEE--cCCeEEEEEccCCceEeec--------CCcCCEEEEEEcCC--EEEEE-ECCCcEEEEECCCCCCCcccc
Q 014003 242 EGPWVFVG--MPNVVKAWHIESSAEFSLD--------GPVGEVYSMVVANE--MLFAG-AQDGNILVWKGIPNTQNPFQL 308 (432)
Q Consensus 242 ~~~~l~~~--~~~~i~vwd~~~~~~~~~~--------~~~~~v~~l~~~~~--~l~~g-~~dg~i~~wd~~~~~~~~~~~ 308 (432)
++++++++ .++.+.++|.++.+.+... .....+.++..++. .+++. -+.+.|.+.|....+. ..
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~---~~ 164 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN---LK 164 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC---EE
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc---cc
Confidence 89988877 6899999999998765321 13456777766655 44444 4458888888777532 11
Q ss_pred ceeeeccccCeEEEEEe--CCEEEEE-eCCCeEEEEECCCCceEEEecC----CCCCcEEEE-------E----cCCEEE
Q 014003 309 AALLKGHTRPVTCLAVG--GKRLYSG-SMDNTIRVWDLDTLEAVMTLNG----HTDAPMSLL-------C----WDQYLL 370 (432)
Q Consensus 309 ~~~~~~h~~~v~~l~~~--~~~l~sg-s~dg~I~vwd~~~~~~~~~~~~----~~~~v~~~~-------~----~~~~l~ 370 (432)
...+. .........|+ +++++++ ..+..|-++|.++++.+..+.. |......+- | .+...+
T Consensus 165 ~~~i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~ 243 (369)
T PF02239_consen 165 VTTIK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAI 243 (369)
T ss_dssp EEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEE
T ss_pred eeeec-ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceec
Confidence 22222 23445566776 7776654 5577999999999988776632 322222221 1 133333
Q ss_pred EEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEE---EeCCCeEEEeeCCC
Q 014003 371 SCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLIC---SCNDDSVHLYELPS 432 (432)
Q Consensus 371 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~s---g~~Dg~I~iwdl~s 432 (432)
+.-....+.+||....+.++.+...... -.+.. +|+++++.+. +...+.|.++|.++
T Consensus 244 ~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~t----hP~s~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 244 PLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKT----HPDSRYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp EEEE--TTT-STTTBTSEEEEEE-SSSS---EE------TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred ccccCCccccchhhcCeEEEEEECCCCc-ceeec----CCCCccEEeeccCCCCCceEEEEECcC
Confidence 3334456778898888888888876555 33344 8999954444 36678999999864
No 215
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.41 E-value=6.9e-10 Score=106.88 Aligned_cols=259 Identities=17% Similarity=0.155 Sum_probs=169.2
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceee--
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS-- 238 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~-- 238 (432)
.+.++.++.++.+..+|..++ +.+...+-........+ .++..++.++.|+.+..+|.++|+.+..........+
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG-~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETG-KRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCC-cEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence 557778888899999999888 55555543332222222 2467888899999999999999999887776554332
Q ss_pred EEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCE------EEEEEcCCEEEEEECCCcEEEEECCCCCCCcccc-cee
Q 014003 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEV------YSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQL-AAL 311 (432)
Q Consensus 239 ~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v------~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~-~~~ 311 (432)
+..++.+++...++.+..+|.++++..-........ .+.....+.++++..+|.+..+|..+++.. ++. ...
T Consensus 142 ~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~-W~~~~~~ 220 (377)
T TIGR03300 142 LVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPL-WEQRVAL 220 (377)
T ss_pred EEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEe-eeecccc
Confidence 223555666668899999999998865322221111 112233457788889999999999887531 110 000
Q ss_pred eecccc-----Ce-EEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCC
Q 014003 312 LKGHTR-----PV-TCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 312 ~~~h~~-----~v-~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~ 385 (432)
..+... .+ .+..+.+..+++++.+|.++.||.++++.+...... ........++.++.++.||.+..+|..+
T Consensus 221 ~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~~~~~vyv~~~~G~l~~~d~~t 298 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAVDDNRLYVTDADGVVVALDRRS 298 (377)
T ss_pred CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceEeCCEEEEECCCCeEEEEECCC
Confidence 000000 01 122335778888999999999999999988877522 2233445688899999999999999998
Q ss_pred CCceeEEeeccC-CcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 386 EGNLEVAYTHNE-DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 386 ~~~~~~~~~~~~-~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
++.+........ ......+ .+. .+++++.+|.|+++|..+
T Consensus 299 G~~~W~~~~~~~~~~ssp~i------~g~-~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 299 GSELWKNDELKYRQLTAPAV------VGG-YLVVGDFEGYLHWLSRED 339 (377)
T ss_pred CcEEEccccccCCccccCEE------ECC-EEEEEeCCCEEEEEECCC
Confidence 876654422111 1111122 244 678888999999998754
No 216
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.41 E-value=2e-10 Score=100.80 Aligned_cols=223 Identities=16% Similarity=0.166 Sum_probs=158.2
Q ss_pred CceEEeeccC--ceeeCCCCCeEEEEeCCCC--cEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeC-CCCc--
Q 014003 153 KNVCYHWLSG--NCVKGDECRFWHSWFCGEG--FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDC-HTGQ-- 225 (432)
Q Consensus 153 ~~~~~~~~~~--~~~~g~~d~~i~vw~~~~~--~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~-~~~~-- 225 (432)
...|..|..+ .++.+-....|+||..... .+...+++.|...|++|.|+|..+.|++++.|..-.+|.. ..++
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wk 91 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWK 91 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeec
Confidence 3556666554 7788888889999998543 6889999999999999999999999999999999999998 4443
Q ss_pred -eeEEEeCCCceeeEE--ECCC-EEEEEcCCeEEEEEccCCceE-----eecCCcCCEEEEEEcCC--EEEEEECCCcEE
Q 014003 226 -SASVINLGAEVGSLI--CEGP-WVFVGMPNVVKAWHIESSAEF-----SLDGPVGEVYSMVVANE--MLFAGAQDGNIL 294 (432)
Q Consensus 226 -~~~~~~~~~~~~~~~--~~~~-~l~~~~~~~i~vwd~~~~~~~-----~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~ 294 (432)
.+-.+.+.....++. +.++ +.+.+....|.+|-.+..... .-......|.+++|+++ ++++|+.|++.+
T Consensus 92 ptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~r 171 (361)
T KOG1523|consen 92 PTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCR 171 (361)
T ss_pred cceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCccee
Confidence 223334555566665 4444 444557788999988877765 33455678899999999 899999999999
Q ss_pred EEECCCCCC-------------CccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCc-eEEEecCCCCC
Q 014003 295 VWKGIPNTQ-------------NPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLE-AVMTLNGHTDA 358 (432)
Q Consensus 295 ~wd~~~~~~-------------~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~-~~~~~~~~~~~ 358 (432)
++..--... ...+++.++....+.+..+.|+ |+.|+-.+.|..+.+-|..... .+.......-+
T Consensus 172 VfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP 251 (361)
T KOG1523|consen 172 VFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLP 251 (361)
T ss_pred EEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCC
Confidence 996422110 0112333444556788889997 9999999999999999987654 34444333345
Q ss_pred cEEEEEc-CCEEEEEeCC
Q 014003 359 PMSLLCW-DQYLLSCSLD 375 (432)
Q Consensus 359 v~~~~~~-~~~l~s~s~d 375 (432)
-.++.|- .+.++.++.|
T Consensus 252 ~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 252 LLSVSWISENSVVAAGYD 269 (361)
T ss_pred ceeeEeecCCceeecCCC
Confidence 5555554 3333333333
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=4.1e-11 Score=107.66 Aligned_cols=231 Identities=11% Similarity=0.111 Sum_probs=163.2
Q ss_pred ccCcEEEEEecCCC--CEEEEEeCCCcEEEEeCCCCceeEEEe-------CCCceeeEE-ECCCEEEEEcCCeEEEEEcc
Q 014003 191 HKKAVSGIALPLRS--DKLYSGSRDGTVQLWDCHTGQSASVIN-------LGAEVGSLI-CEGPWVFVGMPNVVKAWHIE 260 (432)
Q Consensus 191 H~~~V~~l~~~~~~--~~l~s~s~Dg~v~iWd~~~~~~~~~~~-------~~~~~~~~~-~~~~~l~~~~~~~i~vwd~~ 260 (432)
-...|++++|..++ +.|...+.|..+.........+..... ....+..+. .++.++++-.+|.+.+|..+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEecc
Confidence 45677888885443 456666677777777776665554431 112222332 47777888899999999998
Q ss_pred CCc-----eEeecCCcCCEEEEEEcCC---EEEEEECC--CcEEEEECCCCCCCccccceeeec-------cc--cCeEE
Q 014003 261 SSA-----EFSLDGPVGEVYSMVVANE---MLFAGAQD--GNILVWKGIPNTQNPFQLAALLKG-------HT--RPVTC 321 (432)
Q Consensus 261 ~~~-----~~~~~~~~~~v~~l~~~~~---~l~~g~~d--g~i~~wd~~~~~~~~~~~~~~~~~-------h~--~~v~~ 321 (432)
.+. ...+. ....+..+.-.+. .+++|+.. ..+.+||+.+.++ +...+. -. -.++.
T Consensus 134 ~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q-----iw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 134 SGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ-----IWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred CCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeeccccee-----eeeccCCCCccccceeeeeecc
Confidence 543 22222 2244555544433 77789999 8999999988732 111111 11 23445
Q ss_pred EEEe----CCEEEEEeCCCeEEEEECCCC-ceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeE-Ee
Q 014003 322 LAVG----GKRLYSGSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEV-AY 393 (432)
Q Consensus 322 l~~~----~~~l~sgs~dg~I~vwd~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~-~~ 393 (432)
+.|- ...|++++.-+.+++||.+.+ +++..+.--..+++++... +++|++|..-+.+..||++.+..+.. +.
T Consensus 208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k 287 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK 287 (412)
T ss_pred ceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccC
Confidence 6663 568999999999999999875 5688887777777777655 89999999999999999999887776 55
Q ss_pred eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 394 THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 394 ~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+..+.+..+.. +|.++ ++++++-|..|||+|+++
T Consensus 288 g~tGsirsih~----hp~~~-~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 288 GITGSIRSIHC----HPTHP-VLASCGLDRYVRIHDIKT 321 (412)
T ss_pred CccCCcceEEE----cCCCc-eEEeeccceeEEEeeccc
Confidence 66677777776 78877 999999999999999875
No 218
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.6e-11 Score=111.29 Aligned_cols=187 Identities=17% Similarity=0.191 Sum_probs=129.4
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEE
Q 014003 196 SGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVY 275 (432)
Q Consensus 196 ~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~ 275 (432)
..++|+.+|..|++++.||++|+|+..+...+. ....|..+|.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l-------------------------------------~e~~~~~eV~ 190 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL-------------------------------------EEIAHHAEVK 190 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh-------------------------------------hhHhhcCccc
Confidence 778999999999999999999999976654432 2357889999
Q ss_pred EEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceee--eccccCeEEEEEe--C---C-EEEEE-eCCCeEEEEECC
Q 014003 276 SMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALL--KGHTRPVTCLAVG--G---K-RLYSG-SMDNTIRVWDLD 344 (432)
Q Consensus 276 ~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~--~~h~~~v~~l~~~--~---~-~l~sg-s~dg~I~vwd~~ 344 (432)
++.|++| .|++-+.| ..++|+.+++.. +... .........+.|. + . ++++. ..-+.|+.||+.
T Consensus 191 DL~FS~dgk~lasig~d-~~~VW~~~~g~~-----~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~ 264 (398)
T KOG0771|consen 191 DLDFSPDGKFLASIGAD-SARVWSVNTGAA-----LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDIS 264 (398)
T ss_pred cceeCCCCcEEEEecCC-ceEEEEeccCch-----hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEee
Confidence 9999999 78888888 999999998832 1111 1122233344453 2 1 23332 233566666654
Q ss_pred CCce-----EEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEe-eccCCcceEEEeeeeCCCCCcEE
Q 014003 345 TLEA-----VMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAY-THNEDHGVLALGGLNDPDGNPVL 416 (432)
Q Consensus 345 ~~~~-----~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~sp~g~~~l 416 (432)
..+- .++.......+.+++.+ |++++.|+.||.|-|++..+-+.++... .|..-++.+.| +||.+ .+
T Consensus 265 ~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF----~Pdsr-~~ 339 (398)
T KOG0771|consen 265 LWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTF----SPDSR-YL 339 (398)
T ss_pred eeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEE----cCCcC-cc
Confidence 3221 12222223456777766 8999999999999999998877666554 46666666666 89988 78
Q ss_pred EEEeCCCeEEEeeC
Q 014003 417 ICSCNDDSVHLYEL 430 (432)
Q Consensus 417 ~sg~~Dg~I~iwdl 430 (432)
++-+.|..+.|..+
T Consensus 340 ~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 340 ASVSSDNEAAVTKL 353 (398)
T ss_pred cccccCCceeEEEE
Confidence 77888888887654
No 219
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=6.9e-11 Score=118.21 Aligned_cols=179 Identities=24% Similarity=0.326 Sum_probs=137.7
Q ss_pred CCCEEEEEcCCeEEEEEccCCceEeecCCcCCEE--EEE---EcCC--EEEEEECCCcEEEEECCCCCCCccccceeeec
Q 014003 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVY--SMV---VANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG 314 (432)
Q Consensus 242 ~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~--~l~---~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~ 314 (432)
+.....+..++.+.+||...........+..... ++. .+++ ++++|+.-+.|.+|+....+. ...+.+
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~-----p~~l~G 173 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK-----PIRLKG 173 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC-----cceecc
Confidence 3445556789999999998887765544444332 222 2333 899999999999999984321 225789
Q ss_pred cccCeEEEEE--eCCEEEEEeCCCeEEEEECCCCceEE-EecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeE
Q 014003 315 HTRPVTCLAV--GGKRLYSGSMDNTIRVWDLDTLEAVM-TLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEV 391 (432)
Q Consensus 315 h~~~v~~l~~--~~~~l~sgs~dg~I~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 391 (432)
|.+.|..+.+ +|.++++.|+|.++|+|++++.+... +.-+|+..+..+.+.++.+++++.|-+.++|+... ..+..
T Consensus 174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~-~~l~~ 252 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNG-TQLEV 252 (967)
T ss_pred cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEeccc-ceehh
Confidence 9999999999 49999999999999999999998877 77789999999999988999999999999997644 33445
Q ss_pred EeeccCC-cceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 392 AYTHNED-HGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 392 ~~~~~~~-~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+..|... +..++. +.+..++++++.||.+++||+.
T Consensus 253 y~~h~g~~iw~~~~-----~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 253 YDEHSGKGIWKIAV-----PIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred hhhhhhcceeEEEE-----cCCceEEEeeccCcchhhhhhh
Confidence 5555443 333333 4455599999999999999974
No 220
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=2.9e-11 Score=118.12 Aligned_cols=217 Identities=13% Similarity=0.059 Sum_probs=138.8
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCC---CcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeecc
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEE---GTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~D---g~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (432)
.+.+|...+.+.+|||||++||..+.+ ..|.+|++.++.... +....+. .....+.+.+
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-----l~~~~g~-------------~~~~~wSPDG 259 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-----VASFRGH-------------NGAPAFSPDG 259 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-----EecCCCc-------------cCceeECCCC
Confidence 456788889999999999999987654 368999876543210 0000000 0235566666
Q ss_pred CceeeC-CCCCeEEEE--eCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEe-CCCcEEEEeCCCC-ceeEEEeCCCce
Q 014003 162 GNCVKG-DECRFWHSW--FCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGS-RDGTVQLWDCHTG-QSASVINLGAEV 236 (432)
Q Consensus 162 ~~~~~g-~~d~~i~vw--~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s-~Dg~v~iWd~~~~-~~~~~~~~~~~~ 236 (432)
..++.+ +.++.+.+| |+.++ ....+..|...+...+|+|||+.|+.++ .+|...||+++.. .....+......
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~ 337 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGG--TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYS 337 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCC--CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCC
Confidence 666654 467766665 55444 2455667788889999999999877555 5788888886532 222222222222
Q ss_pred eeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeec
Q 014003 237 GSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG 314 (432)
Q Consensus 237 ~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~ 314 (432)
..+.++++.++......+.+||+.++....+... ....+..|+|+ +++.++.++.+.+|++.... ......+..
T Consensus 338 ~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~---G~~~~~l~~ 413 (429)
T PRK01742 338 AQISADGKTLVMINGDNVVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSAD---GRFKARLPG 413 (429)
T ss_pred ccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC---CCceEEccC
Confidence 3345688888766556677799988875544322 23356678887 88888889988888764321 123566667
Q ss_pred cccCeEEEEEe
Q 014003 315 HTRPVTCLAVG 325 (432)
Q Consensus 315 h~~~v~~l~~~ 325 (432)
|...+...+|+
T Consensus 414 ~~g~~~~p~ws 424 (429)
T PRK01742 414 SDGQVKFPAWS 424 (429)
T ss_pred CCCCCCCcccC
Confidence 77777777775
No 221
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.32 E-value=1.8e-10 Score=101.07 Aligned_cols=206 Identities=16% Similarity=0.154 Sum_probs=153.7
Q ss_pred EecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEee
Q 014003 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL 267 (432)
Q Consensus 188 l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~ 267 (432)
+.--.++|+|.+|++|...+|.+-....|.||.....+.-... -.+
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~----------------------------------htl 51 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPA----------------------------------HTL 51 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceec----------------------------------eeh
Confidence 3334689999999999999999999999999988765522111 135
Q ss_pred cCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEEC
Q 014003 268 DGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDL 343 (432)
Q Consensus 268 ~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~ 343 (432)
..|...|+.++|.+. .|++++.|..-++|....+.. +++...+..++...+++.|+ ++.||+|+.-..|.||-+
T Consensus 52 s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~--WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~ 129 (361)
T KOG1523|consen 52 SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT--WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYY 129 (361)
T ss_pred hhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe--eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEE
Confidence 678899999999987 999999999999999854433 67777788899999999998 899999999999999988
Q ss_pred CCCce----EEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcC-----CCC---------ceeEEeeccCCcceEE
Q 014003 344 DTLEA----VMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMT-----EEG---------NLEVAYTHNEDHGVLA 403 (432)
Q Consensus 344 ~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~-----~~~---------~~~~~~~~~~~~~~~~ 403 (432)
+...- .+.-+.+...|.+++|. +-+|++||.|+..+||..- +.. +...+...........
T Consensus 130 E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwv 209 (361)
T KOG1523|consen 130 EQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWV 209 (361)
T ss_pred ecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCce
Confidence 75433 12334567789999999 4578889999999999642 110 0011111111223344
Q ss_pred EeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 404 LGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 404 ~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
....|+|+|. .|+-.+.|..+.+=|.
T Consensus 210 h~v~fs~sG~-~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 210 HGVLFSPSGN-RLAWVGHDSTVSFVDA 235 (361)
T ss_pred eeeEeCCCCC-EeeEecCCCceEEeec
Confidence 4556699999 7888889999887664
No 222
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.31 E-value=3.9e-11 Score=111.73 Aligned_cols=216 Identities=14% Similarity=0.179 Sum_probs=156.4
Q ss_pred cccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCc-e------eeEE-----ECCCEEEEEcCCeEEEE
Q 014003 190 GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE-V------GSLI-----CEGPWVFVGMPNVVKAW 257 (432)
Q Consensus 190 ~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-~------~~~~-----~~~~~l~~~~~~~i~vw 257 (432)
.|...|.++.|+.+...+.+++.+..+.-||+.+. .......... + .... ....+++++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 46677778999877776666665555555555433 2222222111 1 1111 13347778899999998
Q ss_pred EccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe---CCEEEEE
Q 014003 258 HIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSG 332 (432)
Q Consensus 258 d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sg 332 (432)
+-....+.....|.+.+.+-.|+++ -|+++++||.|++|.-... +...+-....+|+|++|. .+.+++.
T Consensus 91 ~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM------LRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 91 NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM------LRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch------HHHHHhhcCceeEEEEECCCCCceEEec
Confidence 8776666677899999999999999 8999999999999984432 233344457789999996 4555554
Q ss_pred eCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCC
Q 014003 333 SMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDP 410 (432)
Q Consensus 333 s~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp 410 (432)
.+.+.|=-+.....+-.++.|.+-|.++.|+ ++.+++|++|-..+|||.. +..+.....|..+++.++| .|
T Consensus 165 --g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~----np 237 (737)
T KOG1524|consen 165 --GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAF----NP 237 (737)
T ss_pred --CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeee----cc
Confidence 3667777777777788899999999999999 7999999999999999985 4555666678888888888 78
Q ss_pred CCCcEEEEEeC
Q 014003 411 DGNPVLICSCN 421 (432)
Q Consensus 411 ~g~~~l~sg~~ 421 (432)
+ + .++.++.
T Consensus 238 d-~-~~~v~S~ 246 (737)
T KOG1524|consen 238 E-K-DYLLWSY 246 (737)
T ss_pred c-c-ceeeeee
Confidence 8 4 5555653
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=4.5e-09 Score=102.60 Aligned_cols=226 Identities=9% Similarity=-0.073 Sum_probs=141.3
Q ss_pred CCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeC---CCcEEEEeCCCCceeEEEeCCCce--eeEEECCC
Q 014003 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR---DGTVQLWDCHTGQSASVINLGAEV--GSLICEGP 244 (432)
Q Consensus 170 d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~---Dg~v~iWd~~~~~~~~~~~~~~~~--~~~~~~~~ 244 (432)
...|.+||.+... ...+..+...+.+.+|+|||+.|+..+. +..|.+||+.+++........... ..+.++++
T Consensus 178 ~~~l~~~d~dg~~--~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 178 PYELRVSDYDGYN--QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred ceeEEEEcCCCCC--CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCC
Confidence 3468888887542 2334456788999999999999886543 457999999988755544333322 34557888
Q ss_pred EEEEE--cCC--eEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEEC-CCc--EEEEECCCCCCCccccceeeecc
Q 014003 245 WVFVG--MPN--VVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQ-DGN--ILVWKGIPNTQNPFQLAALLKGH 315 (432)
Q Consensus 245 ~l~~~--~~~--~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~-dg~--i~~wd~~~~~~~~~~~~~~~~~h 315 (432)
.++.. .++ .|.+||++++....+......+....|+|+ .|+..+. ++. |+++|+.++.. ..+..+
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~------~~lt~~ 329 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP------QRITWE 329 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe------EEeecC
Confidence 77643 233 688999998887776666667788899988 5655554 444 44446655431 222222
Q ss_pred ccCeEEEEEe--CCEEEEEeCC---CeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeCCCc---EEEEEcCCCC
Q 014003 316 TRPVTCLAVG--GKRLYSGSMD---NTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNT---IKVWIMTEEG 387 (432)
Q Consensus 316 ~~~v~~l~~~--~~~l~sgs~d---g~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg~---i~iwd~~~~~ 387 (432)
........|+ |++++..+.+ ..|.+||+.+++...-...+...-.+++.+|++|+.++.++. +.++++. ++
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~ 408 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GR 408 (429)
T ss_pred CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CC
Confidence 3334445554 8888776543 368899998886543222222222233344788988888765 6667773 44
Q ss_pred ceeEEeeccCCcceEEE
Q 014003 388 NLEVAYTHNEDHGVLAL 404 (432)
Q Consensus 388 ~~~~~~~~~~~~~~~~~ 404 (432)
....+..+...+...+|
T Consensus 409 ~~~~l~~~~~~~~~p~W 425 (429)
T PRK03629 409 FKARLPATDGQVKFPAW 425 (429)
T ss_pred CeEECccCCCCcCCccc
Confidence 44555555555444444
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.28 E-value=2e-11 Score=111.83 Aligned_cols=219 Identities=14% Similarity=0.221 Sum_probs=170.4
Q ss_pred ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC
Q 014003 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~ 233 (432)
.+-+.-++..++.|+.-|.+-.+|..+. ++...+.. ...|.++.|-.+.+++|.+- ...+.|||-. |..+.-+...
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~-~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~-GtElHClk~~ 209 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTK-KLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNN-GTELHCLKRH 209 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccc-eeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCC-CcEEeehhhc
Confidence 4445556779999999999999999887 66666643 57799999987888777765 4679999954 6666666555
Q ss_pred CceeeEE--ECCCEEEE-EcCCeEEEEEccCCceE-eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccc
Q 014003 234 AEVGSLI--CEGPWVFV-GMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQ 307 (432)
Q Consensus 234 ~~~~~~~--~~~~~l~~-~~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~ 307 (432)
..+..+. +..-+|++ +..|.++--|+..++.+ .+....+.+..|.-+|- .+-+|...|+|.+|......
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske----- 284 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE----- 284 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc-----
Confidence 5555444 33344443 46788999999999876 34556677778888776 88889999999999987753
Q ss_pred cceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeCCCcEEEEE
Q 014003 308 LAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWI 382 (432)
Q Consensus 308 ~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd 382 (432)
++..+..|.++|.+++++ |++++|.+.|..++|||+++...+.++.. .-+...++++.+-+++.+....+.||.
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeecCCeeeeeh
Confidence 566777899999999998 99999999999999999999888777764 445677888877788888888999994
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.27 E-value=2.6e-11 Score=113.01 Aligned_cols=102 Identities=19% Similarity=0.286 Sum_probs=86.4
Q ss_pred EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCC
Q 014003 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESS 262 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~ 262 (432)
.++..+.--++.|...+|+|||++||+.|.||.+||+|..+.+.+..+
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m-------------------------------- 328 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM-------------------------------- 328 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH--------------------------------
Confidence 445555555679999999999999999999999999999877655443
Q ss_pred ceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeC
Q 014003 263 AEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGG 326 (432)
Q Consensus 263 ~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 326 (432)
...-+...|++|+|| +|++|++|--|.+|.+... +++..-++|...|..++||.
T Consensus 329 -----kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er-----RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 329 -----KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER-----RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred -----HhhccceEEEEEcCCccEEEecCCcceEEEEEeccc-----eEEEeccccccceeeEeecc
Confidence 344567889999999 9999999999999999885 46888899999999999985
No 226
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.26 E-value=2.8e-09 Score=101.18 Aligned_cols=267 Identities=14% Similarity=0.099 Sum_probs=162.3
Q ss_pred eEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCceeEEEeCC
Q 014003 155 VCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGS-RDGTVQLWDCHTGQSASVINLG 233 (432)
Q Consensus 155 ~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~ 233 (432)
.++.+.+..+...+.|+.|.++|+.+. +.+.+++.-. ...++++++||++++++. .++++.++|.++.+.++.+...
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~-~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLATG-KVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTSS-SEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCcc-cEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence 345556666666678999999999988 6777777544 467899999999998775 5899999999999999988754
Q ss_pred C--------ceeeEE--ECCC-EEEEEc-CCeEEEEEccCCceE--eecCCcCCEEEEEEcCC--E-EEEEECCCcEEEE
Q 014003 234 A--------EVGSLI--CEGP-WVFVGM-PNVVKAWHIESSAEF--SLDGPVGEVYSMVVANE--M-LFAGAQDGNILVW 296 (432)
Q Consensus 234 ~--------~~~~~~--~~~~-~l~~~~-~~~i~vwd~~~~~~~--~~~~~~~~v~~l~~~~~--~-l~~g~~dg~i~~w 296 (432)
. .+..+. +... +++.-. .+.|.+.|....... .............++++ + +++...+..|-++
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~vi 199 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVI 199 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEE
Confidence 2 233443 2444 555554 478888887665432 33344556778888888 4 4555677899999
Q ss_pred ECCCCCCCccccceee----eccccCeEEEE-------E----eCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEE
Q 014003 297 KGIPNTQNPFQLAALL----KGHTRPVTCLA-------V----GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMS 361 (432)
Q Consensus 297 d~~~~~~~~~~~~~~~----~~h~~~v~~l~-------~----~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~ 361 (432)
|..+++. +..+ ..|..+...+- | .+...++.-....+.+||..+.+.++++.....+ .-
T Consensus 200 D~~~~k~-----v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lF 273 (369)
T PF02239_consen 200 DTKTGKL-----VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LF 273 (369)
T ss_dssp ETTTTEE-----EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---
T ss_pred eeccceE-----EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ce
Confidence 9887642 2221 12333332221 2 1333333333456778999999999999876666 44
Q ss_pred EEEc--CCEEEEE----eCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCC-eEEEeeCCC
Q 014003 362 LLCW--DQYLLSC----SLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD-SVHLYELPS 432 (432)
Q Consensus 362 ~~~~--~~~l~s~----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg-~I~iwdl~s 432 (432)
+..+ ++++.+. ...++|.++|.++.+....+...... -.....|+++|+.+.+|.-.++ .|.|||.+|
T Consensus 274 i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~---~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 274 IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGK---RVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT-----EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred eecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCC---cEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence 4444 6888887 45689999999998655544332221 1344456999997777776555 899999875
No 227
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.26 E-value=3e-10 Score=107.38 Aligned_cols=213 Identities=16% Similarity=0.135 Sum_probs=154.0
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEc
Q 014003 201 PLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVA 280 (432)
Q Consensus 201 ~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~ 280 (432)
+|...++|....||.+++||...++....+...... +..+.-..|.+.-.....-...........-.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~------------s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL------------SGTCTYTKWGLSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhc------------cCcceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence 456789999999999999999999887777543221 12233334442211100000000011111222
Q ss_pred CCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCC
Q 014003 281 NEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA 358 (432)
Q Consensus 281 ~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~ 358 (432)
...++-|...|.|.+|+...++. .....-..|.+.|.++.++ -..|.+++.|+.+..|+....+.++.+......
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~i---t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEI---TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeE---EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 23888899999999999988752 1222234789999999886 667999999999999999999999999988888
Q ss_pred cEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCC-CCcEEEEEeCCCeEEEeeC
Q 014003 359 PMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPD-GNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 359 v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-g~~~l~sg~~Dg~I~iwdl 430 (432)
+.++... +..+++++ ++|++||+++.+.+..+.+|..++..++|...++.. |+++|.+...+.-+.+|-+
T Consensus 147 ~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred cceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 8888887 45888776 689999999999999999999999999987665444 7877777777777888864
No 228
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.25 E-value=6.5e-08 Score=90.05 Aligned_cols=251 Identities=13% Similarity=0.106 Sum_probs=159.8
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeC----------CCcEEEEeCCCCceeEEEeCCCc-----
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR----------DGTVQLWDCHTGQSASVINLGAE----- 235 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~----------Dg~v~iWd~~~~~~~~~~~~~~~----- 235 (432)
+.|.+.|.++. +.+.++..-..+-. + ++||++.|+.+.. +..|.+||..+.+.+..+..+..
T Consensus 27 ~~v~ViD~~~~-~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAG-RVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCC-EEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 78999999887 77777765443333 4 8999999888766 78999999999999999987544
Q ss_pred -----eeeEEECCCEEEEEc---CCeEEEEEccCCceEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccc
Q 014003 236 -----VGSLICEGPWVFVGM---PNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQ 307 (432)
Q Consensus 236 -----~~~~~~~~~~l~~~~---~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~ 307 (432)
...+.++++++++.. ++.|.+.|+.+++.+....-.+...-+...++...+-+.||......+.........
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 445667999988763 789999999999977544444433333444444445556666665544333221001
Q ss_pred cceeeecc-----ccCeEEEEE-eCCEEEEEeCCCeEEEEECCC-----CceEEEecCC-------CCCcEEEEEc--CC
Q 014003 308 LAALLKGH-----TRPVTCLAV-GGKRLYSGSMDNTIRVWDLDT-----LEAVMTLNGH-------TDAPMSLLCW--DQ 367 (432)
Q Consensus 308 ~~~~~~~h-----~~~v~~l~~-~~~~l~sgs~dg~I~vwd~~~-----~~~~~~~~~~-------~~~v~~~~~~--~~ 367 (432)
....+..- ..+ .+.. +++++++..+ |+|.+.|+.. .+....+... .+...-++++ ++
T Consensus 184 ~~~vf~~~~~~v~~rP--~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 184 PTEVFHPEDEYLINHP--AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred eeeeecCCccccccCC--ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 11111110 112 1122 4777777776 9999999543 3333333211 1222235555 66
Q ss_pred EEEEEe----------CCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEE-eCCCeEEEeeCCC
Q 014003 368 YLLSCS----------LDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICS-CNDDSVHLYELPS 432 (432)
Q Consensus 368 ~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg-~~Dg~I~iwdl~s 432 (432)
.++... ..+.|.++|..+.+.+..+.... ....+++ +|||+++|++. ..++.|.++|+.+
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~-~~~~iav----S~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH-EIDSINV----SQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC-ceeeEEE----CCCCCeEEEEeCCCCCcEEEEECcC
Confidence 666532 22579999999988887776533 3344555 89999555544 4788999999864
No 229
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.25 E-value=1.1e-08 Score=99.17 Aligned_cols=254 Identities=14% Similarity=0.104 Sum_probs=165.1
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEE-EEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCce---
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSG-IALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV--- 236 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~-l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~--- 236 (432)
.+.++.++.++.+..+|.+++ +.+...+... .+.+ -.. .+..++.+..++.+..+|.++|+.+-......+.
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG-~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDG-EVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCC-CCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence 446667778899999999887 4455444322 2221 111 2456777888999999999999998887754321
Q ss_pred ----eeEEECCCEEEEEcCCeEEEEEccCCceEeecC---CcC---------CEEEEEEcCCEEEEEECCCcEEEEECCC
Q 014003 237 ----GSLICEGPWVFVGMPNVVKAWHIESSAEFSLDG---PVG---------EVYSMVVANEMLFAGAQDGNILVWKGIP 300 (432)
Q Consensus 237 ----~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~---~~~---------~v~~l~~~~~~l~~g~~dg~i~~wd~~~ 300 (432)
..+..++..++...++.+..+|.++++..-... ..+ ...+..+..+.+++++.+|.+..+|..+
T Consensus 196 ~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t 275 (394)
T PRK11138 196 RGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS 275 (394)
T ss_pred cCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC
Confidence 122335556666788999999998887542211 100 0112223455777888999999999998
Q ss_pred CCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCC-CCcEEEEEcCCEEEEEeCCCcEE
Q 014003 301 NTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT-DAPMSLLCWDQYLLSCSLDNTIK 379 (432)
Q Consensus 301 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l~s~s~dg~i~ 379 (432)
++. +-... ......+...+..++.++.+|.+..+|.++++.+.....-. ....+....+.+|+.++.||.+.
T Consensus 276 G~~-----~W~~~--~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~ 348 (394)
T PRK11138 276 GQI-----VWKRE--YGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLH 348 (394)
T ss_pred CCE-----EEeec--CCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEE
Confidence 853 11111 11122345568889999999999999999999877654221 12233334578899999999999
Q ss_pred EEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 380 VWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 380 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+.|..+++.+............... . .++ .|+.++.||.|..++++
T Consensus 349 ~ld~~tG~~~~~~~~~~~~~~s~P~---~-~~~--~l~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 349 WINREDGRFVAQQKVDSSGFLSEPV---V-ADD--KLLIQARDGTVYAITRP 394 (394)
T ss_pred EEECCCCCEEEEEEcCCCcceeCCE---E-ECC--EEEEEeCCceEEEEeCC
Confidence 9999998877665443222211111 1 233 57778899999998764
No 230
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.25 E-value=2.8e-10 Score=106.18 Aligned_cols=155 Identities=18% Similarity=0.231 Sum_probs=112.0
Q ss_pred cCcEEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEE------cCCeEEEEEccCCce
Q 014003 192 KKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVG------MPNVVKAWHIESSAE 264 (432)
Q Consensus 192 ~~~V~~l~~~~~-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~i~vwd~~~~~~ 264 (432)
+..|+++.|-|. ...++.+-.+|.+.++|.+--. ....+......++..+... .++-+.-|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-----~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w------- 286 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-----GATAPSYQALKDGDQFAILTSKSKKTRNPVARW------- 286 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccc-----cCCCCcccccCCCCeeEEeeeeccccCCcccee-------
Confidence 478999999774 4566677789999999872110 0011111111222222221 11222222
Q ss_pred EeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEE
Q 014003 265 FSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRV 340 (432)
Q Consensus 265 ~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~v 340 (432)
.-..+.|..++|++| +||+.+.||.++|||..+.. ++..++.--+...|++|+ |+++++|++|-.|.|
T Consensus 287 ---~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtV 358 (636)
T KOG2394|consen 287 ---HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTV 358 (636)
T ss_pred ---EeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhccceEEEEEcCCccEEEecCCcceEEE
Confidence 233457889999999 99999999999999998853 455555556778999997 999999999999999
Q ss_pred EECCCCceEEEecCCCCCcEEEEEcC
Q 014003 341 WDLDTLEAVMTLNGHTDAPMSLLCWD 366 (432)
Q Consensus 341 wd~~~~~~~~~~~~~~~~v~~~~~~~ 366 (432)
|.+...+++..-.+|...|..++|+.
T Consensus 359 wSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 359 WSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEeccceEEEeccccccceeeEeecc
Confidence 99999999999999999999999996
No 231
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=1.8e-11 Score=114.36 Aligned_cols=216 Identities=16% Similarity=0.213 Sum_probs=149.2
Q ss_pred CCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCc
Q 014003 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (432)
..+.||+..|..++--.+..-+.|+|.|.|+++|.+...+- .
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD------~-------------------------------- 770 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD------E-------------------------------- 770 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC------c--------------------------------
Confidence 35689999999888877777788888899999996443221 0
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECC
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~ 243 (432)
..+ ..+..+++.|+.+|.++.|-.+.++++++ ||-|.+||.--+..+..+.
T Consensus 771 --------------~~t-saCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~------------ 821 (1034)
T KOG4190|consen 771 --------------IGT-SACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQME------------ 821 (1034)
T ss_pred --------------ccc-ceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhh------------
Confidence 000 13456789999999999998888888765 7889999987766554332
Q ss_pred CEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEE
Q 014003 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (432)
Q Consensus 244 ~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 321 (432)
|+.+ .+..+.|.++.--.. .++.++...+|+++|.+...-.-.-.+....+....+.+
T Consensus 822 -------------dapk-------~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 822 -------------DAPK-------EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred -------------cCcc-------cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 1111 223334445433222 344447889999999887652100011112344556778
Q ss_pred EEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc-CCEEEEEeCCCcEEE-EEcCCC
Q 014003 322 LAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKV-WIMTEE 386 (432)
Q Consensus 322 l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~s~dg~i~i-wd~~~~ 386 (432)
++.. |+.++++-.+|.|.+.|.++|+.+..+..-......++.- ++.|+....|.++.+ |..-.+
T Consensus 882 iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 882 IAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred EEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCC
Confidence 8774 9999999999999999999999998887666555555443 678888888999888 876554
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=4.6e-09 Score=102.89 Aligned_cols=219 Identities=14% Similarity=0.016 Sum_probs=136.4
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCC---CcEEEEeCCCCceeEEEeCCCce--eeEEECCCE
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD---GTVQLWDCHTGQSASVINLGAEV--GSLICEGPW 245 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~D---g~v~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~ 245 (432)
..|.+||.+.. ....+..|...+.+.+|+|||+.|+..+.+ ..|.+||+.+++........... ..+.+++..
T Consensus 184 ~~l~i~D~~g~--~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGY--NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCC--CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCE
Confidence 46888998654 234456678889999999999999988743 46999999988765544333322 234467876
Q ss_pred EEE--EcCC--eEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEE-CCCc--EEEEECCCCCCCccccceeeeccc
Q 014003 246 VFV--GMPN--VVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA-QDGN--ILVWKGIPNTQNPFQLAALLKGHT 316 (432)
Q Consensus 246 l~~--~~~~--~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~-~dg~--i~~wd~~~~~~~~~~~~~~~~~h~ 316 (432)
++. ..++ .|.+||+.+++...+..+........|+++ .++..+ .+|. |+++|+.++.. ..+..+.
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~------~~lt~~g 335 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA------ERLTFQG 335 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe------EEeecCC
Confidence 653 2333 699999999887766666555667889887 555554 4554 66667665532 1121122
Q ss_pred cCeEEEEEe--CCEEEEEeCCC---eEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCC---CcEEEEEcCCC
Q 014003 317 RPVTCLAVG--GKRLYSGSMDN---TIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLD---NTIKVWIMTEE 386 (432)
Q Consensus 317 ~~v~~l~~~--~~~l~sgs~dg---~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d---g~i~iwd~~~~ 386 (432)
......+|+ |++++..+.++ .|.+||+.+++.. .+. +........++ +++|+..+.+ +.|.++++..
T Consensus 336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g- 412 (433)
T PRK04922 336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG- 412 (433)
T ss_pred CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-
Confidence 233345665 88887765443 6999999888765 333 22223344555 6777666653 3577777744
Q ss_pred CceeEEeeccCCcc
Q 014003 387 GNLEVAYTHNEDHG 400 (432)
Q Consensus 387 ~~~~~~~~~~~~~~ 400 (432)
.....+..+...+.
T Consensus 413 ~~~~~l~~~~g~~~ 426 (433)
T PRK04922 413 RVRQRLVSADGEVR 426 (433)
T ss_pred CceEEcccCCCCCC
Confidence 33333433333333
No 233
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.22 E-value=2.1e-09 Score=94.79 Aligned_cols=300 Identities=12% Similarity=0.076 Sum_probs=173.7
Q ss_pred CCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccC---ceeeCCCCC
Q 014003 95 SYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG---NCVKGDECR 171 (432)
Q Consensus 95 ~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~d~ 171 (432)
-..|||+|+|+|+.+ +--+-|-|.++-+... +....++..-..|..+ .+-....++
T Consensus 13 ~c~fSp~g~yiAs~~-~yrlviRd~~tlq~~q--------------------lf~cldki~yieW~ads~~ilC~~yk~~ 71 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-RYRLVIRDSETLQLHQ--------------------LFLCLDKIVYIEWKADSCHILCVAYKDP 71 (447)
T ss_pred ceeECCCCCeeeeee-eeEEEEeccchhhHHH--------------------HHHHHHHhhheeeeccceeeeeeeeccc
Confidence 467899999999998 4455565544432100 0000012233344433 334566788
Q ss_pred eEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCE-EEEEeCCCcEEEEeCCCCceeEEEeCCCcee--eEEECCCEEEE
Q 014003 172 FWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDK-LYSGSRDGTVQLWDCHTGQSASVINLGAEVG--SLICEGPWVFV 248 (432)
Q Consensus 172 ~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~-l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ 248 (432)
.|.+|++... +-...++....++.+++|+|+|+. |.+...|-.|.+|.+.+.+....-.....+. .+..++++.+.
T Consensus 72 ~vqvwsl~Qp-ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai 150 (447)
T KOG4497|consen 72 KVQVWSLVQP-EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAI 150 (447)
T ss_pred eEEEEEeecc-eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeee
Confidence 9999999776 556677778899999999999955 5566678999999998876554433322222 22234544432
Q ss_pred E-------------------------------------cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEEC
Q 014003 249 G-------------------------------------MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQ 289 (432)
Q Consensus 249 ~-------------------------------------~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~ 289 (432)
. .++.+.+||.--.-.+-.....-.+..+.|+|- ++++|+.
T Consensus 151 ~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 151 LSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSY 230 (447)
T ss_pred eecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeecc
Confidence 2 223444554322222112233356778888884 9999999
Q ss_pred CCcEEEEECCCCCC-----------------------C--------------------------------------cccc
Q 014003 290 DGNILVWKGIPNTQ-----------------------N--------------------------------------PFQL 308 (432)
Q Consensus 290 dg~i~~wd~~~~~~-----------------------~--------------------------------------~~~~ 308 (432)
|+.+++.+--+-+. . ..++
T Consensus 231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp 310 (447)
T KOG4497|consen 231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP 310 (447)
T ss_pred chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence 99998865221000 0 0000
Q ss_pred ceeeeccccCeEEEEEe--CCEEEEEeC--CCeEEEEECCCCceEEEecCCCCCcEEEEEcC--CEEEEEeCCCcEEEEE
Q 014003 309 AALLKGHTRPVTCLAVG--GKRLYSGSM--DNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD--QYLLSCSLDNTIKVWI 382 (432)
Q Consensus 309 ~~~~~~h~~~v~~l~~~--~~~l~sgs~--dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~dg~i~iwd 382 (432)
........-.+.-++|+ ..++++-.. -+.+-+||++..+....+. ...+|....|++ ..|+.+.....+++|.
T Consensus 311 ~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 311 PTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred CCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence 01111122335567787 455555432 2578999999877655553 456788888883 5677777777899998
Q ss_pred cCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCC
Q 014003 383 MTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD 423 (432)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg 423 (432)
......+.... ..-.+.. ..|.-+|. .++-.+.|.
T Consensus 390 psg~~~V~vP~-~GF~i~~----l~W~~~g~-~i~l~~kDa 424 (447)
T KOG4497|consen 390 PSGPRVVGVPK-KGFNIQK----LQWLQPGE-FIVLCGKDA 424 (447)
T ss_pred CCCceEEecCC-CCceeee----EEecCCCc-EEEEEcCCc
Confidence 76543332221 1122223 33466777 444444553
No 234
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.19 E-value=3e-09 Score=94.35 Aligned_cols=261 Identities=15% Similarity=0.162 Sum_probs=166.3
Q ss_pred ceEEeeccCceeeCCCCCeEEEEeCCCCcE----EEEEEeccc------------CcEEEEEecCCC--CEEEEEeCCCc
Q 014003 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFT----MLAKLEGHK------------KAVSGIALPLRS--DKLYSGSRDGT 215 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~----~~~~l~~H~------------~~V~~l~~~~~~--~~l~s~s~Dg~ 215 (432)
.+-+...+..+++|+.+|.|-++.-+...+ ....++.|+ ..|..+.|.+++ ..++....|++
T Consensus 30 ~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdkt 109 (433)
T KOG1354|consen 30 AVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKT 109 (433)
T ss_pred eEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcc
Confidence 455666788999999999999998754322 555666666 468899997755 46778889999
Q ss_pred EEEEeCCCCceeE-EEe--CCCceeeEEECCCEEEEEcCCeEEEEEccC--------CceEeecCCcCCEEEEEEcCC-E
Q 014003 216 VQLWDCHTGQSAS-VIN--LGAEVGSLICEGPWVFVGMPNVVKAWHIES--------SAEFSLDGPVGEVYSMVVANE-M 283 (432)
Q Consensus 216 v~iWd~~~~~~~~-~~~--~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~--------~~~~~~~~~~~~v~~l~~~~~-~ 283 (432)
|++|.+....... ... ...+... -..+++--+.. ...+-...|.--|.++.++.| .
T Consensus 110 iKlWKi~er~~k~~~~~~~~~~~~~~------------~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E 177 (433)
T KOG1354|consen 110 IKLWKIRERGSKKEGYNLPEEGPPGT------------ITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE 177 (433)
T ss_pred eeeeeeeccccccccccccccCCCCc------------cceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence 9999986543222 000 0000000 00111111110 011123578888999999998 5
Q ss_pred EEEEECCCcEEEEECCCCCCCccccceeeecc-----ccCeEEEEEe---CCEEEEEeCCCeEEEEECCCCceE----EE
Q 014003 284 LFAGAQDGNILVWKGIPNTQNPFQLAALLKGH-----TRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAV----MT 351 (432)
Q Consensus 284 l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~----~~ 351 (432)
.+....|=.|.+|++.-..+. +.++ .++.+ ..-|++..|+ -+.++-.++.|+|++-|++...+. ..
T Consensus 178 t~lSADdLRINLWnlei~d~s-FnIV-DIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 178 TFLSADDLRINLWNLEIIDQS-FNIV-DIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred eEeeccceeeeeccccccCCc-eeEE-EccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 666677889999998754331 2222 22222 3456777776 678888889999999999853321 11
Q ss_pred ec------------CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcC-CCCceeEEeeccCCc-----------ceEEEe
Q 014003 352 LN------------GHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMT-EEGNLEVAYTHNEDH-----------GVLALG 405 (432)
Q Consensus 352 ~~------------~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~-----------~~~~~~ 405 (432)
+. .--..|..+.|+ |+|+++-+. -+|++||+. ..+++..+..|.... -.-.|.
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence 11 111346667777 688887643 689999994 455666655554211 112356
Q ss_pred eeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 406 GLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 406 ~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
++|+.++. .+++|+..+.+++|++
T Consensus 335 c~~sg~~~-~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 335 CSWSGNDS-YVMTGSYNNVFRVFNL 358 (433)
T ss_pred EEEcCCcc-eEecccccceEEEecC
Confidence 77788888 9999999999999985
No 235
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=3.9e-10 Score=118.27 Aligned_cols=194 Identities=18% Similarity=0.268 Sum_probs=154.0
Q ss_pred EecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCc--eeeEE--E-CCCEEEEEcCCeEEEEEccCC
Q 014003 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE--VGSLI--C-EGPWVFVGMPNVVKAWHIESS 262 (432)
Q Consensus 188 l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~--~~~~~--~-~~~~l~~~~~~~i~vwd~~~~ 262 (432)
++.|-..|.++.=+|...+-+||+.||.|++|....++.+..+...+. +..+. . .+++-++..||.+.+|.....
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc
Confidence 344567788888889999999999999999999999998888876554 22222 2 445556679999999999977
Q ss_pred ceEeecCCcCCEEEEEEcCCEEEEEE---CCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCe
Q 014003 263 AEFSLDGPVGEVYSMVVANEMLFAGA---QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNT 337 (432)
Q Consensus 263 ~~~~~~~~~~~v~~l~~~~~~l~~g~---~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~ 337 (432)
.....+.|......+.|-...+++++ .++.+.+||..-.... -.+. ..|.+.++++++- .+.|++|+.+|.
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~--s~v~--~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMN--SLVH--TCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred ceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCccc--ceee--eecCCCceEEEEcCcceEEEecCCcCc
Confidence 67778888888888888888666654 5789999997665431 2233 7899999999986 788999999999
Q ss_pred EEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEe
Q 014003 338 IRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 338 I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (432)
|++||++..+++++++. +. ...++++++..|.|+||++.....+..+.
T Consensus 2360 v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEEeehHHHHHHHHhhh-------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999999988888764 22 36799999999999999998876655443
No 236
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=2.8e-10 Score=119.36 Aligned_cols=209 Identities=16% Similarity=0.223 Sum_probs=148.2
Q ss_pred EEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCc
Q 014003 156 CYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE 235 (432)
Q Consensus 156 ~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~ 235 (432)
-.++.....++|+.||.+++|....+.+.+.--.+-...|+.+.|+.+|+.+..+..||.+.+|.....-...-..+...
T Consensus 2215 ~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~ 2294 (2439)
T KOG1064|consen 2215 TSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKA 2294 (2439)
T ss_pred cCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCcc
Confidence 34667779999999999999999877444433334459999999999999999999999999999873222222223333
Q ss_pred eeeEEECCCEEEE-E---cCCeEEEEEccCC--ceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccc
Q 014003 236 VGSLICEGPWVFV-G---MPNVVKAWHIESS--AEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQ 307 (432)
Q Consensus 236 ~~~~~~~~~~l~~-~---~~~~i~vwd~~~~--~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~ 307 (432)
...+.+-+..++. + .++.+.+||..-. .-.....|.+.++++++.|. .+++|+.+|.|++||++..+
T Consensus 2295 ~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq----- 2369 (2439)
T KOG1064|consen 2295 LSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ----- 2369 (2439)
T ss_pred ccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH-----
Confidence 3344433344433 2 4678999996433 33344889999999999998 99999999999999998754
Q ss_pred cceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCCC-----c--EEEEEc-CCEEEEEeCCCc
Q 014003 308 LAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA-----P--MSLLCW-DQYLLSCSLDNT 377 (432)
Q Consensus 308 ~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~-----v--~~~~~~-~~~l~s~s~dg~ 377 (432)
+++.++. +. ...++++|+..|.|+||++.....++++...... . +.+... .+.|.+++.||+
T Consensus 2370 l~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2370 LRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred HHHHhhh-------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence 3444433 22 3789999999999999999988888777532110 1 112222 467888887763
No 237
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.15 E-value=4.8e-09 Score=99.36 Aligned_cols=141 Identities=24% Similarity=0.418 Sum_probs=112.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC
Q 014003 203 RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE 282 (432)
Q Consensus 203 ~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~ 282 (432)
+...++-|...|.|.++++..++....+. ...|.+.|.++.++.+
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~s-----------------------------------t~~h~~~v~~~~~~~~ 113 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLS-----------------------------------TDKHYGNVNEILDAQR 113 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEe-----------------------------------cCCCCCcceeeecccc
Confidence 44567777778888888888777666553 2467888888888877
Q ss_pred --EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCC
Q 014003 283 --MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA 358 (432)
Q Consensus 283 --~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~ 358 (432)
.|.+++.|+.+..|+..... .+..++.....+.++++. +..+++++ +.|++||+++++.+.+|.+|.++
T Consensus 114 ~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~ 186 (541)
T KOG4547|consen 114 LGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSP 186 (541)
T ss_pred cCceEecCCceeEEEEecccce-----eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcc
Confidence 89999999999999988864 577777778888888876 66888876 78999999999999999999999
Q ss_pred cEEEEEc-------CCEEEEE-eCCCcEEEEEcCC
Q 014003 359 PMSLLCW-------DQYLLSC-SLDNTIKVWIMTE 385 (432)
Q Consensus 359 v~~~~~~-------~~~l~s~-s~dg~i~iwd~~~ 385 (432)
|.+++|- |.+++++ ..+.-|.+|-+..
T Consensus 187 v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 187 VRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999886 3555544 4566788887765
No 238
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.15 E-value=5.7e-10 Score=98.85 Aligned_cols=264 Identities=14% Similarity=0.163 Sum_probs=153.6
Q ss_pred CCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeec----cCcee
Q 014003 90 KKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWL----SGNCV 165 (432)
Q Consensus 90 ~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 165 (432)
.+-|..+.|...|.+||+|..+|-+-+...+......-+-.....+.......-+..-... +.....|. .....
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieE--KinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEE--KINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhh--hhhhceecCCCCccEEE
Confidence 3567889999999999999999999998554432200000000000000000000000000 11122232 33566
Q ss_pred eCCCCCeEEEEeCCCCcEEE----------------------------------EEE-ecccCcEEEEEecCCCCEEEEE
Q 014003 166 KGDECRFWHSWFCGEGFTML----------------------------------AKL-EGHKKAVSGIALPLRSDKLYSG 210 (432)
Q Consensus 166 ~g~~d~~i~vw~~~~~~~~~----------------------------------~~l-~~H~~~V~~l~~~~~~~~l~s~ 210 (432)
....|++|++|.+....... +.+ .+|.--|.+|+++.|+..++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 77889999999984321111 111 2466667777777777766665
Q ss_pred eCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEE
Q 014003 211 SRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAG 287 (432)
Q Consensus 211 s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g 287 (432)
. |=.|.+|+++--. +...+.|++- ..+.....-|++..|+|. .++-.
T Consensus 183 D-dLRINLWnlei~d--------------------------~sFnIVDIKP---~nmEeLteVITsaEFhp~~cn~f~YS 232 (433)
T KOG1354|consen 183 D-DLRINLWNLEIID--------------------------QSFNIVDIKP---ANMEELTEVITSAEFHPHHCNVFVYS 232 (433)
T ss_pred c-ceeeeeccccccC--------------------------CceeEEEccc---cCHHHHHHHHhhhccCHhHccEEEEe
Confidence 3 4567777765221 1112222221 123344556788888887 88889
Q ss_pred ECCCcEEEEECCCCCCCc--cccc---------eeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEEC-CCCceEEEec
Q 014003 288 AQDGNILVWKGIPNTQNP--FQLA---------ALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDL-DTLEAVMTLN 353 (432)
Q Consensus 288 ~~dg~i~~wd~~~~~~~~--~~~~---------~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~-~~~~~~~~~~ 353 (432)
+..|+|++.|++...... .++. .-+..--..|..+.|+ |+++++-+. -+|++||+ ...+++.++.
T Consensus 233 SSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~ 311 (433)
T KOG1354|consen 233 SSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYP 311 (433)
T ss_pred cCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEe
Confidence 999999999998543110 0000 0111223467778886 788887643 58999999 5567788877
Q ss_pred CCCC------------C---cEEEEEcC--CEEEEEeCCCcEEEEEcCCC
Q 014003 354 GHTD------------A---PMSLLCWD--QYLLSCSLDNTIKVWIMTEE 386 (432)
Q Consensus 354 ~~~~------------~---v~~~~~~~--~~l~s~s~dg~i~iwd~~~~ 386 (432)
-|.. . -..++|+| .+++||+..+..+++++..+
T Consensus 312 vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 312 VHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 6642 1 24556665 49999999999999996543
No 239
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=3.9e-08 Score=96.45 Aligned_cols=209 Identities=13% Similarity=0.034 Sum_probs=128.9
Q ss_pred CCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeC---CCcEEEEeCCCCceeEEEeCCCceeeEEECCCEE
Q 014003 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR---DGTVQLWDCHTGQSASVINLGAEVGSLICEGPWV 246 (432)
Q Consensus 170 d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~---Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (432)
...|.++|.+.. ....+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++....
T Consensus 181 ~~~l~~~d~dg~--~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l----------------- 241 (435)
T PRK05137 181 IKRLAIMDQDGA--NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV----------------- 241 (435)
T ss_pred ceEEEEECCCCC--CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe-----------------
Confidence 347888888554 24456678889999999999999888764 45788888877654321
Q ss_pred EEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--E-EEEEECCCc--EEEEECCCCCCCccccceeeeccccCeEE
Q 014003 247 FVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--M-LFAGAQDGN--ILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (432)
Q Consensus 247 ~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~-l~~g~~dg~--i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 321 (432)
....+.+.+..|+|+ . +++.+.++. |++||+.++. ...+..+......
T Consensus 242 ---------------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~------~~~Lt~~~~~~~~ 294 (435)
T PRK05137 242 ---------------------GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT------TTRLTDSPAIDTS 294 (435)
T ss_pred ---------------------ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc------eEEccCCCCccCc
Confidence 223344556778877 4 445566655 7777887664 2334344444555
Q ss_pred EEEe--CCEEEEEeC-CC--eEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCC---CcEEEEEcCCCCceeE
Q 014003 322 LAVG--GKRLYSGSM-DN--TIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLD---NTIKVWIMTEEGNLEV 391 (432)
Q Consensus 322 l~~~--~~~l~sgs~-dg--~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d---g~i~iwd~~~~~~~~~ 391 (432)
..|+ |+.++..+. +| .|+++|+.+++.. .+..+........|+ ++.|+..+.+ ..|.+||+..... ..
T Consensus 295 ~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~ 372 (435)
T PRK05137 295 PSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RI 372 (435)
T ss_pred eeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Ee
Confidence 6665 787776663 33 6888898776553 333333444445555 7788776543 3588888755432 22
Q ss_pred EeeccCCcceEEEeeeeCCCCCcEEEEEeCCC-----eEEEeeCC
Q 014003 392 AYTHNEDHGVLALGGLNDPDGNPVLICSCNDD-----SVHLYELP 431 (432)
Q Consensus 392 ~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg-----~I~iwdl~ 431 (432)
+. ........ .|+|||+.+++++...+ .+.++|+.
T Consensus 373 lt-~~~~~~~p----~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 373 LT-SGFLVEGP----TWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred cc-CCCCCCCC----eECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 22 22223333 45999995555554332 56777764
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=5.1e-08 Score=95.27 Aligned_cols=226 Identities=13% Similarity=-0.003 Sum_probs=130.4
Q ss_pred CCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCC---CcEEEEeCCCCceeEEEeCCCce--eeEEECCC
Q 014003 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD---GTVQLWDCHTGQSASVINLGAEV--GSLICEGP 244 (432)
Q Consensus 170 d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~D---g~v~iWd~~~~~~~~~~~~~~~~--~~~~~~~~ 244 (432)
...|.++|.+.. ....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++........... ....+++.
T Consensus 175 ~~~L~~~D~dG~--~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 175 RYQLQISDADGQ--NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred ccEEEEECCCCC--CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC
Confidence 345777777443 234455778899999999999999877653 35999999988765544333332 33446887
Q ss_pred EEEE--EcCCeEEE--EEccCCceEeecCCcCCEEEEEEcCC--EEEEEE-CCCcEEEEECCCCCCCccccceeeecccc
Q 014003 245 WVFV--GMPNVVKA--WHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA-QDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 245 ~l~~--~~~~~i~v--wd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~-~dg~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
.++. ..++...+ +|+..+....+..+........|+++ .++..+ .+|...+|.+...... ...+..+..
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~----~~~lt~~g~ 328 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA----AQRVTFTGS 328 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc----eEEEecCCC
Confidence 6653 34555444 45666665555555555667788888 555444 4566666655422111 111111122
Q ss_pred CeEEEEEe--CCEEEEEeCCC---eEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCC-c--EEEEEcCCCC
Q 014003 318 PVTCLAVG--GKRLYSGSMDN---TIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDN-T--IKVWIMTEEG 387 (432)
Q Consensus 318 ~v~~l~~~--~~~l~sgs~dg---~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg-~--i~iwd~~~~~ 387 (432)
.....+|+ |++++..+.++ .|.+||+.+++....... .......|+ ++.|+.++.++ . +.+.++. ++
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~ 405 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GR 405 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEECC-CC
Confidence 22234554 88888776654 699999998876433322 222344555 67777666544 3 4444552 33
Q ss_pred ceeEEeeccCCcceEEE
Q 014003 388 NLEVAYTHNEDHGVLAL 404 (432)
Q Consensus 388 ~~~~~~~~~~~~~~~~~ 404 (432)
....+..+...+...+|
T Consensus 406 ~~~~l~~~~g~~~~p~w 422 (427)
T PRK02889 406 IKQRLSVQGGDVREPSW 422 (427)
T ss_pred ceEEeecCCCCCCCCcc
Confidence 33334334343333343
No 241
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.12 E-value=1.3e-07 Score=84.90 Aligned_cols=211 Identities=15% Similarity=0.064 Sum_probs=144.4
Q ss_pred CCeEEEEeCCCCcEEEEEEec---ccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCcee--eEEECCC
Q 014003 170 CRFWHSWFCGEGFTMLAKLEG---HKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG--SLICEGP 244 (432)
Q Consensus 170 d~~i~vw~~~~~~~~~~~l~~---H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~--~~~~~~~ 244 (432)
++.|..||..++ +.+....- ....+ +.. .+++.++++++.++.|..||..+|+.+..+....... ....++.
T Consensus 2 ~g~l~~~d~~tG-~~~W~~~~~~~~~~~~-~~~-~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTG-KELWSYDLGPGIGGPV-ATA-VPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGR 78 (238)
T ss_dssp TSEEEEEETTTT-EEEEEEECSSSCSSEE-ETE-EEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTE
T ss_pred CCEEEEEECCCC-CEEEEEECCCCCCCcc-ceE-EEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccc
Confidence 688999999888 55665543 22222 112 2357788888999999999999999999888765533 2445666
Q ss_pred EEEEEcCCeEEEEEccCCceEee--cCC-----cCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeecccc
Q 014003 245 WVFVGMPNVVKAWHIESSAEFSL--DGP-----VGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 245 ~l~~~~~~~i~vwd~~~~~~~~~--~~~-----~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
+++...++.+..+|.++++..-. ... ........+..+.++++..++.|..+|..+++. +........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~-----~w~~~~~~~ 153 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL-----LWKYPVGEP 153 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE-----EEEEESSTT
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE-----EEEeecCCC
Confidence 66777888999999999986533 111 112334555577899999999999999998853 333333221
Q ss_pred C-----------eEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEE-EEEcCCEEEEEeCCCcEEEEEcCC
Q 014003 318 P-----------VTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMS-LLCWDQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 318 ~-----------v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~-~~~~~~~l~s~s~dg~i~iwd~~~ 385 (432)
. ...+.+.+..++.++.++.+..+|+++++.+.... . ..... ....+..|+.++.++.|..||+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~-~-~~~~~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP-I-SGIYSLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp -SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC-S-S-ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred CCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec-C-CCccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence 1 12333445588888888864444999999776444 2 22333 555688888888999999999999
Q ss_pred CCcee
Q 014003 386 EGNLE 390 (432)
Q Consensus 386 ~~~~~ 390 (432)
++.+.
T Consensus 232 G~~~W 236 (238)
T PF13360_consen 232 GKVVW 236 (238)
T ss_dssp TEEEE
T ss_pred CCEEe
Confidence 87654
No 242
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.11 E-value=1.2e-07 Score=85.04 Aligned_cols=207 Identities=18% Similarity=0.151 Sum_probs=137.2
Q ss_pred CCcEEEEeCCCCceeEEEeCCCce---e-eEE-ECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEE-EEEEcCCEEEE
Q 014003 213 DGTVQLWDCHTGQSASVINLGAEV---G-SLI-CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVY-SMVVANEMLFA 286 (432)
Q Consensus 213 Dg~v~iWd~~~~~~~~~~~~~~~~---~-~~~-~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~-~l~~~~~~l~~ 286 (432)
+|+|..||..+|+.+......... . ... .++.++++..++.+..||..+++..-.......+. ......+.+++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v 81 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYV 81 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccccc
Confidence 689999999999999998763322 2 122 45555555699999999999998653322222221 13556668888
Q ss_pred EECCCcEEEEECCCCCCCcccccee-eecc-----ccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCc-
Q 014003 287 GAQDGNILVWKGIPNTQNPFQLAAL-LKGH-----TRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAP- 359 (432)
Q Consensus 287 g~~dg~i~~wd~~~~~~~~~~~~~~-~~~h-----~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v- 359 (432)
++.++.++.+|..+++. ... .... ........+.++.++.+..++.|..+|+++|+.+..........
T Consensus 82 ~~~~~~l~~~d~~tG~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 82 GTSDGSLYALDAKTGKV-----LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EETTSEEEEEETTTSCE-----EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred ccceeeeEecccCCcce-----eeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 88999999999888864 222 1111 11223445568999999999999999999999998887644321
Q ss_pred ----------EEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 360 ----------MSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 360 ----------~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
..+...+..++.++.++.+..+|+.+++.+... . ....... . .+++. .|++++.++.|..||
T Consensus 157 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~-~-~~~~~~~-~----~~~~~-~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSK-P-ISGIYSL-P----SVDGG-TLYVTSSDGRLYALD 228 (238)
T ss_dssp --EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEE-C-SS-ECEC-E----ECCCT-EEEEEETTTEEEEEE
T ss_pred cceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEe-c-CCCccCC-c----eeeCC-EEEEEeCCCEEEEEE
Confidence 233334558888888886444499998755321 1 1211111 1 35666 666666999999999
Q ss_pred CCC
Q 014003 430 LPS 432 (432)
Q Consensus 430 l~s 432 (432)
++|
T Consensus 229 ~~t 231 (238)
T PF13360_consen 229 LKT 231 (238)
T ss_dssp TTT
T ss_pred CCC
Confidence 875
No 243
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=8.2e-09 Score=92.21 Aligned_cols=191 Identities=16% Similarity=0.210 Sum_probs=131.0
Q ss_pred cCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCc
Q 014003 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPV 271 (432)
Q Consensus 192 ~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~ 271 (432)
+..+..++|++.-..++++..|-+|++||-.. ++...++ ....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lk------------------------------------s~sQ 140 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK------------------------------------SVSQ 140 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceec------------------------------------chhh
Confidence 45678899998777899999999999999876 4443333 2334
Q ss_pred CCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCcc---------ccceeeeccccCeEEEEEe--CCEEEEEeC-CC
Q 014003 272 GEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPF---------QLAALLKGHTRPVTCLAVG--GKRLYSGSM-DN 336 (432)
Q Consensus 272 ~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~---------~~~~~~~~h~~~v~~l~~~--~~~l~sgs~-dg 336 (432)
..|.+++|-|. .+++|+.. -|.+|.......... -.+...++| .+|++|.++ |..+++++. |.
T Consensus 141 rnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred cceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcc
Confidence 56889999887 67777664 578897644321100 012223455 689999997 888888775 57
Q ss_pred eEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCc
Q 014003 337 TIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNP 414 (432)
Q Consensus 337 ~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~ 414 (432)
.|.|||..++..+.-....-+.+.-+.|+ +++|+++.-|+..++|...............+.+.. .+|+|+|..
T Consensus 219 si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt----acWspcGsf 294 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT----ACWSPCGSF 294 (445)
T ss_pred eEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceee----eeecCCCCE
Confidence 89999999988766554455567777777 799999999999999965543322222223334333 345999998
Q ss_pred EEEEEeCCCeE
Q 014003 415 VLICSCNDDSV 425 (432)
Q Consensus 415 ~l~sg~~Dg~I 425 (432)
+|++.+..-.|
T Consensus 295 LLf~~sgsp~l 305 (445)
T KOG2139|consen 295 LLFACSGSPRL 305 (445)
T ss_pred EEEEEcCCceE
Confidence 77777655444
No 244
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.07 E-value=1.9e-07 Score=90.43 Aligned_cols=259 Identities=13% Similarity=0.062 Sum_probs=161.7
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEeccc-C---------cEE-EEEecCCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHK-K---------AVS-GIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV 229 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~-~---------~V~-~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~ 229 (432)
.+.+..++.++.+..+|.+++ +.+...+-.. . .+. .+.. .+..++.++.+|.+..+|.++|+.+-.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTG-KEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCC-cEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 446666777788888888877 4454443211 0 000 1111 356788888999999999999999888
Q ss_pred EeCCCceee--EEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCE------EEEEEcCCEEEEEECCCcEEEEECCCC
Q 014003 230 INLGAEVGS--LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEV------YSMVVANEMLFAGAQDGNILVWKGIPN 301 (432)
Q Consensus 230 ~~~~~~~~~--~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v------~~l~~~~~~l~~g~~dg~i~~wd~~~~ 301 (432)
.+......+ +..++.+++...++.+..+|.++++..-......+. .+-....+.++.++.+|.+..+|..++
T Consensus 146 ~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G 225 (394)
T PRK11138 146 TKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQG 225 (394)
T ss_pred ccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCC
Confidence 876654332 334566666668899999999999865322211110 112223457778889999999999887
Q ss_pred CCCcccc-ceeeec-cc-----cCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeC
Q 014003 302 TQNPFQL-AALLKG-HT-----RPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSL 374 (432)
Q Consensus 302 ~~~~~~~-~~~~~~-h~-----~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~ 374 (432)
+.. ++. .....+ +. ....+....+..++.++.+|.+..+|..+|+.+.+.... ....+...+..++.++.
T Consensus 226 ~~~-W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~~~~~vy~~~~ 302 (394)
T PRK11138 226 QLI-WQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAVDGGRIYLVDQ 302 (394)
T ss_pred hhh-heeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEEECCEEEEEcC
Confidence 542 110 000000 00 000122234778888889999999999999988766422 22234556888888999
Q ss_pred CCcEEEEEcCCCCceeEEeeccC-CcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 375 DNTIKVWIMTEEGNLEVAYTHNE-DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 375 dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+|.+..+|..+++.+........ ......+ .+. .|+.++.||.|.+.|.++
T Consensus 303 ~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v------~~g-~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 303 NDRVYALDTRGGVELWSQSDLLHRLLTAPVL------YNG-YLVVGDSEGYLHWINRED 354 (394)
T ss_pred CCeEEEEECCCCcEEEcccccCCCcccCCEE------ECC-EEEEEeCCCEEEEEECCC
Confidence 99999999998876543321111 1111112 133 567788899998888654
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.07 E-value=5.6e-09 Score=104.86 Aligned_cols=188 Identities=17% Similarity=0.229 Sum_probs=147.9
Q ss_pred CcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE-------ECCCEEEEE-cCCeEEEEEccCCc-
Q 014003 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI-------CEGPWVFVG-MPNVVKAWHIESSA- 263 (432)
Q Consensus 193 ~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~-~~~~i~vwd~~~~~- 263 (432)
+.|....+..+...++.+..+..+-+||...+.........+...-.. .+.-+++++ .-+.|.+|+.....
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 444445566677889999999999999999888777777665543221 133344444 67899999987433
Q ss_pred eEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEE
Q 014003 264 EFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVW 341 (432)
Q Consensus 264 ~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vw 341 (432)
...+.+|.+.+.++.++.+ ++++.++|.++++|++.+.+. .....-+|...|..+.+..+.+++++.|-+.++|
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~----~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW 243 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV----LGCTGFGHSARVWACCFLPNRIITVGEDCTCRVW 243 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc----cCcccccccceeEEEEeccceeEEeccceEEEEE
Confidence 3468999999999999766 999999999999999999864 2345668999999999998899999999999999
Q ss_pred ECCCCceEEEecCCCCC-cEEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 014003 342 DLDTLEAVMTLNGHTDA-PMSLLCW--DQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 342 d~~~~~~~~~~~~~~~~-v~~~~~~--~~~l~s~s~dg~i~iwd~~~ 385 (432)
+.. ++.+..+.+|... +..++.. ...++|++.|+.+++||+..
T Consensus 244 ~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 244 GVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 754 5666688888764 7777777 46889999999999999864
No 246
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=1.1e-09 Score=97.19 Aligned_cols=150 Identities=23% Similarity=0.329 Sum_probs=119.3
Q ss_pred CCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeE
Q 014003 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (432)
Q Consensus 243 ~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 320 (432)
+..+++|.+..+-+-|++++....+. ..+.|.++.|... +++.|+.+|.|..+|++...+....+...+ -|...|+
T Consensus 225 gyhfs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvt 302 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVT 302 (425)
T ss_pred eeeecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchh
Confidence 34466778888889999988776655 6778888888763 999999999999999998754434444444 4888999
Q ss_pred EEE---EeCCEEEEEeCCCeEEEEECCCCce---EEEecCCCCCcEEEEEc----CCEEEEEeCCCcEEEEEcCCCCcee
Q 014003 321 CLA---VGGKRLYSGSMDNTIRVWDLDTLEA---VMTLNGHTDAPMSLLCW----DQYLLSCSLDNTIKVWIMTEEGNLE 390 (432)
Q Consensus 321 ~l~---~~~~~l~sgs~dg~I~vwd~~~~~~---~~~~~~~~~~v~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~ 390 (432)
++. |++.+|.+.+.+|+|++||.+.-++ +.++.||...-.-+-+. ...+++++.|-..+||.++.+..+.
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 875 5699999999999999999998777 99999997764444433 5789999999999999999887766
Q ss_pred EEee
Q 014003 391 VAYT 394 (432)
Q Consensus 391 ~~~~ 394 (432)
.+.-
T Consensus 383 tipf 386 (425)
T KOG2695|consen 383 TIPF 386 (425)
T ss_pred ccCC
Confidence 5543
No 247
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.02 E-value=2.1e-08 Score=87.32 Aligned_cols=110 Identities=18% Similarity=0.250 Sum_probs=88.2
Q ss_pred EEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECC-CCce
Q 014003 275 YSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLD-TLEA 348 (432)
Q Consensus 275 ~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~-~~~~ 348 (432)
.++.|++. .++++..+|.+.+-+..... .+.++.++.|..++...+|+ .+.+++|+.|+.+..||+| .++.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~---le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMV---LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceee---eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence 45555544 88999999999855544332 34566889999999999997 7899999999999999999 4555
Q ss_pred EEE-ecCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEcCCCC
Q 014003 349 VMT-LNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEG 387 (432)
Q Consensus 349 ~~~-~~~~~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~ 387 (432)
+.. .+.|...|.++..+ +.+|++|+.|..|++||.++..
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~ 244 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG 244 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence 554 56789999999988 4699999999999999999544
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.00 E-value=3.3e-07 Score=89.57 Aligned_cols=197 Identities=13% Similarity=0.022 Sum_probs=125.2
Q ss_pred CCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCC---CcEEEEeCCCCceeEEEeCCCcee--eEEECCC
Q 014003 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD---GTVQLWDCHTGQSASVINLGAEVG--SLICEGP 244 (432)
Q Consensus 170 d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~D---g~v~iWd~~~~~~~~~~~~~~~~~--~~~~~~~ 244 (432)
...|.++|.+.. . ...+..+...+...+|+|+|++|+.++.+ ..|.+||+.+++............ .+.++++
T Consensus 169 ~~~l~~~d~~g~-~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 169 RYELQVADYDGA-N-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred cceEEEEcCCCC-C-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC
Confidence 446778887543 2 34455677789999999999999887654 479999999887655544433332 3446777
Q ss_pred EEEEE--c--CCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEEC-CC--cEEEEECCCCCCCccccceeeecc
Q 014003 245 WVFVG--M--PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQ-DG--NILVWKGIPNTQNPFQLAALLKGH 315 (432)
Q Consensus 245 ~l~~~--~--~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~-dg--~i~~wd~~~~~~~~~~~~~~~~~h 315 (432)
.++.. . ...|.+|++.++....+..+........|+++ .++..+. ++ .|+++|+.++. ...+..+
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~------~~~l~~~ 320 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE------VRRLTFR 320 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC------EEEeecC
Confidence 66543 2 34688999998876666555555556677776 5555443 33 57777876553 2223333
Q ss_pred ccCeEEEEEe--CCEEEEEeCCC---eEEEEECCCCceEEEecCCCCCcEEEEE--cCCEEEEEeCCC
Q 014003 316 TRPVTCLAVG--GKRLYSGSMDN---TIRVWDLDTLEAVMTLNGHTDAPMSLLC--WDQYLLSCSLDN 376 (432)
Q Consensus 316 ~~~v~~l~~~--~~~l~sgs~dg---~I~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~s~dg 376 (432)
...+....|+ +++++.++.++ .|.+||+.++... .+.... ......+ ++++|+..+.++
T Consensus 321 ~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~-~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 321 GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTG-LDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCC-CCCCceECCCCCEEEEEEeCC
Confidence 4445566665 88888888776 8999999886543 332221 1222334 467777766654
No 249
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=1.4e-06 Score=78.16 Aligned_cols=262 Identities=16% Similarity=0.194 Sum_probs=162.1
Q ss_pred eeccCceeeCCCCCeEEEEeCCCCcEEEEEEe-cccCcEEEEEecCCC-CEEEEEeCCCcEEEEeCCCC----c------
Q 014003 158 HWLSGNCVKGDECRFWHSWFCGEGFTMLAKLE-GHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTG----Q------ 225 (432)
Q Consensus 158 ~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~-~H~~~V~~l~~~~~~-~~l~s~s~Dg~v~iWd~~~~----~------ 225 (432)
+...-.++.+..|-.|++|+-... ....++ .-...|++++|-|.+ ..|+.|... -|.+|..... .
T Consensus 107 hqH~~~fava~nddvVriy~ksst--~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s 183 (445)
T KOG2139|consen 107 HQHIIAFAVATNDDVVRIYDKSST--CPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMS 183 (445)
T ss_pred chhhhhhhhhccCcEEEEeccCCC--CCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccccccc
Confidence 333346788999999999998663 222333 345789999998865 456666654 5999986421 1
Q ss_pred --eeEEEe--CCCceeeEEE--CCCEEEEE--cCCeEEEEEccCCceEeec-CCcCCEEEEEEcCC--EEEEEECCCcEE
Q 014003 226 --SASVIN--LGAEVGSLIC--EGPWVFVG--MPNVVKAWHIESSAEFSLD-GPVGEVYSMVVANE--MLFAGAQDGNIL 294 (432)
Q Consensus 226 --~~~~~~--~~~~~~~~~~--~~~~l~~~--~~~~i~vwd~~~~~~~~~~-~~~~~v~~l~~~~~--~l~~g~~dg~i~ 294 (432)
....++ .+.++..+.. ++..++.+ .+..|.+||+.++..+.+. ...+.+.-+.|+|+ ++++++-|+..+
T Consensus 184 ~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfr 263 (445)
T KOG2139|consen 184 THHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFR 263 (445)
T ss_pred ccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceee
Confidence 112222 2344556664 56666654 6789999999999877666 45567888999998 999999999999
Q ss_pred EEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCC----C--------c---eEEEe-----
Q 014003 295 VWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDT----L--------E---AVMTL----- 352 (432)
Q Consensus 295 ~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~----~--------~---~~~~~----- 352 (432)
+|+...... ..+ .....+.|....|+ |.+|+-.+. |.-++|.+.- . + ++..+
T Consensus 264 lw~e~q~wt----~er-w~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti 337 (445)
T KOG2139|consen 264 LWQENQSWT----KER-WILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTI 337 (445)
T ss_pred eehhcccce----ecc-eeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhh
Confidence 996554321 111 22233477777776 655443332 2233333321 0 0 01111
Q ss_pred -cC---CCCCcEEEEEc--CCEEEEEeCCC--------cEEEEEcCCCCceeEEee---ccCCcceEEEeeeeCCCCCcE
Q 014003 353 -NG---HTDAPMSLLCW--DQYLLSCSLDN--------TIKVWIMTEEGNLEVAYT---HNEDHGVLALGGLNDPDGNPV 415 (432)
Q Consensus 353 -~~---~~~~v~~~~~~--~~~l~s~s~dg--------~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~sp~g~~~ 415 (432)
.+ -.+.+.+++++ |.+|++.-..+ .|.+||.+..-.+....- ..+....+.|...+ .+|. +
T Consensus 338 ~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~-n~g~-l 415 (445)
T KOG2139|consen 338 CAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLK-NEGR-L 415 (445)
T ss_pred hcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecc-cCCc-E
Confidence 11 13456778887 88988876544 377788876655544421 22334556665554 4666 7
Q ss_pred EEEEeCCCeEEEeeC
Q 014003 416 LICSCNDDSVHLYEL 430 (432)
Q Consensus 416 l~sg~~Dg~I~iwdl 430 (432)
|..+=..|.+.-|++
T Consensus 416 LsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 416 LSIAWSTGRIQRYPL 430 (445)
T ss_pred EEEEeccCceEeeee
Confidence 877777888877764
No 250
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.96 E-value=8.1e-08 Score=82.89 Aligned_cols=106 Identities=14% Similarity=0.300 Sum_probs=80.5
Q ss_pred CcCCEEEEEEcCC--EE--EEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeC---CCeEEE
Q 014003 270 PVGEVYSMVVANE--ML--FAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM---DNTIRV 340 (432)
Q Consensus 270 ~~~~v~~l~~~~~--~l--~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~---dg~I~v 340 (432)
..++|.+++|+|+ .+ +.|..++.|.+||++.. .+..+ +...+..+.|+ |++|++++. .|.|.+
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~------~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~ 129 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK------KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEF 129 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCccc------EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEE
Confidence 3456999999998 43 33556789999999632 34444 35677889997 999999874 467999
Q ss_pred EECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeC------CCcEEEEEcCC
Q 014003 341 WDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL------DNTIKVWIMTE 385 (432)
Q Consensus 341 wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~------dg~i~iwd~~~ 385 (432)
||+++.+.+.+.... .+..+.|+ |++|+++.. |+.++||+...
T Consensus 130 wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 130 WDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 999999998887633 35677777 899998875 78899999853
No 251
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=7.5e-07 Score=84.29 Aligned_cols=260 Identities=12% Similarity=0.138 Sum_probs=151.1
Q ss_pred ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEE-----eCC-----CcEEEEeCCC
Q 014003 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSG-----SRD-----GTVQLWDCHT 223 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~-----s~D-----g~v~iWd~~~ 223 (432)
.++.+...+.+.+-..+..++|++..... .+.+... ..+.++.|+|-+++|.|= ..| -.+.+|++++
T Consensus 38 ~v~~~S~~G~lfA~~~~~~v~i~~~~~~~-~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet 114 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDNQVVKVFEIATLK-VVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET 114 (566)
T ss_pred eeEEEcCCCcEEEEEcCCeEEEEEccCCc-EEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeeeeecc
Confidence 34555556666667777889999997764 3333332 279999999999998763 222 3467999998
Q ss_pred CceeEEEeCCCce---eeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC----EEEE-----EECCC
Q 014003 224 GQSASVINLGAEV---GSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFA-----GAQDG 291 (432)
Q Consensus 224 ~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~----~l~~-----g~~dg 291 (432)
+.....+...... .....+..+.+--..+.+.+|++...+.....-+...+..+.++|. .+++ .+.-+
T Consensus 115 ~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa 194 (566)
T KOG2315|consen 115 GVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPA 194 (566)
T ss_pred ceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCc
Confidence 6544444432211 1111222222223445566665555443333333333444433332 1211 12222
Q ss_pred cEEEE---------------------------------------------------------ECCCCCCCccccceeeec
Q 014003 292 NILVW---------------------------------------------------------KGIPNTQNPFQLAALLKG 314 (432)
Q Consensus 292 ~i~~w---------------------------------------------------------d~~~~~~~~~~~~~~~~~ 314 (432)
.+++| ++...+ ....+ .
T Consensus 195 ~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s-----~~V~L-~ 268 (566)
T KOG2315|consen 195 SVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES-----VSVPL-L 268 (566)
T ss_pred EEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce-----EEEec-C
Confidence 34444 333111 11111 1
Q ss_pred cccCeEEEEEe--CCEEE--EEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCC---CcEEEEEcCC
Q 014003 315 HTRPVTCLAVG--GKRLY--SGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLD---NTIKVWIMTE 385 (432)
Q Consensus 315 h~~~v~~l~~~--~~~l~--sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d---g~i~iwd~~~ 385 (432)
..++|.++.|+ ++.++ -|-+--++.|||++ +.++..+. .++-.++-|+ |++|+.++.+ |.|-|||+.+
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 36789999997 54443 35667889999986 57777764 3444555555 8898888764 7899999999
Q ss_pred CCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeC-----CCeEEEeeCC
Q 014003 386 EGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCN-----DDSVHLYELP 431 (432)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~-----Dg~I~iwdl~ 431 (432)
.+++..+..... ..+.|+|||++++.+.+. |+.++||++.
T Consensus 346 ~K~i~~~~a~~t------t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 346 RKLIAKFKAANT------TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred hhhccccccCCc------eEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 777766554322 234469999944444443 7889999863
No 252
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.95 E-value=7.2e-06 Score=77.82 Aligned_cols=255 Identities=16% Similarity=0.247 Sum_probs=152.2
Q ss_pred CCeEEEEeC--CCC-cEEEEEEecccCcEEEEEecCCCCEEEEEeC----CCcEEEEeCCCC--c--eeEEEe-CCCcee
Q 014003 170 CRFWHSWFC--GEG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSR----DGTVQLWDCHTG--Q--SASVIN-LGAEVG 237 (432)
Q Consensus 170 d~~i~vw~~--~~~-~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~----Dg~v~iWd~~~~--~--~~~~~~-~~~~~~ 237 (432)
.+-|.+|++ +++ ...+..+ .-......|+++|++++|++... ++.|..|++... + .+.... ......
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~ 90 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC 90 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE
T ss_pred CCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE
Confidence 367888888 333 2222222 23456677899999999999987 578999988764 2 333333 223223
Q ss_pred eEE--ECCCEEEEE--cCCeEEEEEccCCc-eEee--------------cCCcCCEEEEEEcCC--EEEEE-ECCCcEEE
Q 014003 238 SLI--CEGPWVFVG--MPNVVKAWHIESSA-EFSL--------------DGPVGEVYSMVVANE--MLFAG-AQDGNILV 295 (432)
Q Consensus 238 ~~~--~~~~~l~~~--~~~~i~vwd~~~~~-~~~~--------------~~~~~~v~~l~~~~~--~l~~g-~~dg~i~~ 295 (432)
.+. +++.+++++ .++.+.++++.... .... ........++.++|+ ++++. -....|.+
T Consensus 91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~ 170 (345)
T PF10282_consen 91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV 170 (345)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEE
Confidence 333 478888877 68999999998743 2111 123345778899988 45443 44568999
Q ss_pred EECCCCCCCccccceeee-ccccCeEEEEEe--CCEEEEEe-CCCeEEEEECC--CCc--eEEEecCC----C--CCcEE
Q 014003 296 WKGIPNTQNPFQLAALLK-GHTRPVTCLAVG--GKRLYSGS-MDNTIRVWDLD--TLE--AVMTLNGH----T--DAPMS 361 (432)
Q Consensus 296 wd~~~~~~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~sgs-~dg~I~vwd~~--~~~--~~~~~~~~----~--~~v~~ 361 (432)
|++...... +.....+. .....-..+.|+ ++++++.. .++.|.++++. +++ .+..+... . .....
T Consensus 171 ~~~~~~~~~-l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T PF10282_consen 171 YDIDDDTGK-LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE 249 (345)
T ss_dssp EEE-TTS-T-EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred EEEeCCCce-EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence 999776521 11122222 233456778887 67776554 57889999988 443 23333211 1 13455
Q ss_pred EEEc--CCEEEEEe-CCCcEEEEEcCCC-CceeEEe---eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 362 LLCW--DQYLLSCS-LDNTIKVWIMTEE-GNLEVAY---THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 362 ~~~~--~~~l~s~s-~dg~i~iwd~~~~-~~~~~~~---~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
+.++ +++|+++. .++.|.+|+++.. ..+.... ........+++ +|+|+.++++...++.|.+|++
T Consensus 250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~----s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF----SPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-----TTSSEEEEEETTTTEEEEEEE
T ss_pred EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE----eCCCCEEEEEecCCCeEEEEEE
Confidence 5555 77776655 5778999999432 3333322 22232345555 8999966666668889999976
No 253
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=1.8e-07 Score=91.75 Aligned_cols=169 Identities=10% Similarity=-0.031 Sum_probs=98.6
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEE-EEeCCCc--EEEEeCCCCceeEEEeCCCceeeEEECCCEEE
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLY-SGSRDGT--VQLWDCHTGQSASVINLGAEVGSLICEGPWVF 247 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~-s~s~Dg~--v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (432)
..|.+|++.++.. ..+..+.+.+.+.+|+|||+.|+ +.+.++. |.+||+.+++...
T Consensus 226 ~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~------------------- 284 (435)
T PRK05137 226 PRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR------------------- 284 (435)
T ss_pred CEEEEEECCCCcE--EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-------------------
Confidence 4578888876632 34555677788899999998775 5555554 5556766654322
Q ss_pred EEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEE-CCC--cEEEEECCCCCCCccccceeeeccccCeEEE
Q 014003 248 VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA-QDG--NILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (432)
Q Consensus 248 ~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~-~dg--~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l 322 (432)
+..+........|+|+ .++..+ .+| .|+++|+..+.. ..+..+...+...
T Consensus 285 -------------------Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~------~~lt~~~~~~~~~ 339 (435)
T PRK05137 285 -------------------LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP------RRISFGGGRYSTP 339 (435)
T ss_pred -------------------ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe------EEeecCCCcccCe
Confidence 2223333445677776 555544 333 578888766532 2222233344455
Q ss_pred EEe--CCEEEEEeCC---CeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCC------CcEEEEEcCCCC
Q 014003 323 AVG--GKRLYSGSMD---NTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLD------NTIKVWIMTEEG 387 (432)
Q Consensus 323 ~~~--~~~l~sgs~d---g~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d------g~i~iwd~~~~~ 387 (432)
.|+ |+.++..+.+ ..|.+||+.++.. ..+.. ...+....|+ ++.|+..+.+ ..+.++|+....
T Consensus 340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred EECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 665 8888776543 3688999865543 33332 2234445555 6777655443 257777776544
No 254
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=1.2e-06 Score=85.72 Aligned_cols=202 Identities=10% Similarity=-0.020 Sum_probs=121.0
Q ss_pred cEEEEeCCCCceeEEEeCCCcee--eEEECCCEEEE-E---cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEE
Q 014003 215 TVQLWDCHTGQSASVINLGAEVG--SLICEGPWVFV-G---MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFA 286 (432)
Q Consensus 215 ~v~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~l~~-~---~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~ 286 (432)
.|.+||...............+. ...++++.++. + .+..+.+|++.+++...+....+......|+|+ .|+.
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~ 259 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF 259 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEE
Confidence 68899987665444434333333 34468877664 2 345799999998876555544455567889988 4544
Q ss_pred -EECCC--cEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCC-C--eEEEEECCCCceEEEecCCCCC
Q 014003 287 -GAQDG--NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMD-N--TIRVWDLDTLEAVMTLNGHTDA 358 (432)
Q Consensus 287 -g~~dg--~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d-g--~I~vwd~~~~~~~~~~~~~~~~ 358 (432)
.+.+| .|++||+.++.. ..+..+...+....|+ |+.|+..+.+ + .|.++|+.+++.. .+..+...
T Consensus 260 ~~~~~g~~~I~~~d~~tg~~------~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~ 332 (429)
T PRK03629 260 ALSKTGSLNLYVMDLASGQI------RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQ 332 (429)
T ss_pred EEcCCCCcEEEEEECCCCCE------EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCC
Confidence 44455 588899887642 2233334456667776 7877766654 4 4555677766543 33333333
Q ss_pred cEEEEEc--CCEEEEEeCC---CcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCe---EEEeeC
Q 014003 359 PMSLLCW--DQYLLSCSLD---NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDS---VHLYEL 430 (432)
Q Consensus 359 v~~~~~~--~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~---I~iwdl 430 (432)
.....++ |++|+..+.+ ..|.+||+.+++.. .+... .... ...|+|||+ .|+.++.++. +.++++
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~----~p~~SpDG~-~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDE----TPSIAPNGT-MVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCC----CceECCCCC-EEEEEEcCCCceEEEEEEC
Confidence 3344444 7788776543 35888998776533 22221 1112 344599999 5666655554 566665
No 255
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.95 E-value=9.2e-08 Score=82.54 Aligned_cols=128 Identities=14% Similarity=0.284 Sum_probs=85.1
Q ss_pred CcEEEEECCCCCCCccccceeeec-cccCeEEEEEe--CCEEEE--EeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc
Q 014003 291 GNILVWKGIPNTQNPFQLAALLKG-HTRPVTCLAVG--GKRLYS--GSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW 365 (432)
Q Consensus 291 g~i~~wd~~~~~~~~~~~~~~~~~-h~~~v~~l~~~--~~~l~s--gs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~ 365 (432)
|...+|.++.... ....+.. ...+|.+++|+ ++.+++ |..++.|.+||++ ++.+..+. ...+..+.|+
T Consensus 37 ~~~~l~~~~~~~~----~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~ws 109 (194)
T PF08662_consen 37 GEFELFYLNEKNI----PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWS 109 (194)
T ss_pred eeEEEEEEecCCC----ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEEC
Confidence 3455665544322 2333332 34579999997 777654 4567899999997 77777775 4556677777
Q ss_pred --CCEEEEEeCC---CcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEe-----CCCeEEEeeCC
Q 014003 366 --DQYLLSCSLD---NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC-----NDDSVHLYELP 431 (432)
Q Consensus 366 --~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~-----~Dg~I~iwdl~ 431 (432)
|++|++++.+ |.|.+||+++.+.+.... |. . +..+.|+|+|++++.+.+ .|+.++||++.
T Consensus 110 P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~----~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 110 PDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-D----ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-c----EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 7999998754 669999999766654432 21 1 234456999994444444 38999999874
No 256
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=5.5e-07 Score=88.26 Aligned_cols=205 Identities=13% Similarity=-0.005 Sum_probs=123.1
Q ss_pred CcEEEEeCCCCceeEEEeCCCceee--EEECCCEEEEE----cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EE-
Q 014003 214 GTVQLWDCHTGQSASVINLGAEVGS--LICEGPWVFVG----MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--ML- 284 (432)
Q Consensus 214 g~v~iWd~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~----~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l- 284 (432)
.+|.+||...............+.. ..++++.++.. ....|.+||+.+++...+....+...+..|+|+ .+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence 4689999875544444444444433 33677766643 234799999998887665555556667889888 44
Q ss_pred EEEECCC--cEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeC-CCe--EEEEECCCCceEEEecCCCC
Q 014003 285 FAGAQDG--NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM-DNT--IRVWDLDTLEAVMTLNGHTD 357 (432)
Q Consensus 285 ~~g~~dg--~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~-dg~--I~vwd~~~~~~~~~~~~~~~ 357 (432)
++.+.+| .|++||+.++. ...+..+.......+|+ |+.|+..+. +|. |+++|+.+++... +..+..
T Consensus 264 ~~~s~~g~~~Iy~~d~~~g~------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~ 336 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLGSRQ------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGN 336 (433)
T ss_pred EEEeCCCCceEEEEECCCCC------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCC
Confidence 4556665 59999988764 23333444444556775 787776664 444 7777887766433 222222
Q ss_pred CcEEEEEc--CCEEEEEeCCC---cEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCC--eEEEeeC
Q 014003 358 APMSLLCW--DQYLLSCSLDN---TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD--SVHLYEL 430 (432)
Q Consensus 358 ~v~~~~~~--~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg--~I~iwdl 430 (432)
......++ +++|+..+.++ .|.+||+.+++.. .+. +...... ..|+|||+.++++....+ .|.++++
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~----p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDES----PSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCC----ceECCCCCEEEEEEecCCceEEEEEEC
Confidence 33345555 78887765443 5999999776543 222 2222222 345999995555554433 4666665
Q ss_pred C
Q 014003 431 P 431 (432)
Q Consensus 431 ~ 431 (432)
.
T Consensus 411 ~ 411 (433)
T PRK04922 411 D 411 (433)
T ss_pred C
Confidence 3
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.93 E-value=1.4e-07 Score=82.24 Aligned_cols=226 Identities=15% Similarity=0.164 Sum_probs=142.6
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEeccc---C---cEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCce
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHK---K---AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV 236 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~---~---~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~ 236 (432)
.++.+..+|.|.++..... .....|++-+ - .-.++.|++.+..++++-.+|.+.+-+........
T Consensus 87 ~l~~a~a~G~i~~~r~~~~-~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~-------- 157 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDED-ESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEK-------- 157 (339)
T ss_pred eeeeccccceEEEEeeccc-eeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeee--------
Confidence 4566677788999887654 2233343322 1 23466778888888888888887744332221111
Q ss_pred eeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEc---CCEEEEEECCCcEEEEECCCCCCCccccceeee
Q 014003 237 GSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVA---NEMLFAGAQDGNILVWKGIPNTQNPFQLAALLK 313 (432)
Q Consensus 237 ~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~---~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~ 313 (432)
....+.|.-+.+...|+ |+++.+|+.|+.+..||++..+. ..-+..+
T Consensus 158 ---------------------------vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~---~i~~n~k 207 (339)
T KOG0280|consen 158 ---------------------------VQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT---FIWHNSK 207 (339)
T ss_pred ---------------------------cccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc---eeeecce
Confidence 11235666677777665 45999999999999999995432 2233356
Q ss_pred ccccCeEEEEEe---CCEEEEEeCCCeEEEEECC-CCceEEEecCCCCCcEEEEEcC---CEEEEEeCCCcEEEEEcCCC
Q 014003 314 GHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLD-TLEAVMTLNGHTDAPMSLLCWD---QYLLSCSLDNTIKVWIMTEE 386 (432)
Q Consensus 314 ~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~-~~~~~~~~~~~~~~v~~~~~~~---~~l~s~s~dg~i~iwd~~~~ 386 (432)
-|...|.+|.-+ +.++++|+.|-.|++||.| .++++..-. -.+.|..+...+ ..++.++.-+-.+|-+....
T Consensus 208 vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 208 VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred eeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 788999999876 6799999999999999999 466665544 336778877763 33444555555677766554
Q ss_pred Cce-eEEeeccCCcceEEEeeeeCCCCCcEEEEE-eCCCeEE-Eee
Q 014003 387 GNL-EVAYTHNEDHGVLALGGLNDPDGNPVLICS-CNDDSVH-LYE 429 (432)
Q Consensus 387 ~~~-~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg-~~Dg~I~-iwd 429 (432)
..- ............++....|..... +|+++ ..|+.++ +|-
T Consensus 287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~-~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDSLCYGGDWDSKDS-FLATCSFYDKKIRQLWL 331 (339)
T ss_pred ccchheeeeccccccceeeccccccccc-eeeeeeccccceeeeee
Confidence 321 222222223355666666644433 56654 4677755 774
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=2.4e-06 Score=83.81 Aligned_cols=205 Identities=9% Similarity=0.014 Sum_probs=123.3
Q ss_pred eEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCC---CcEEEEeCCCCceeEEEeCCCce--eeEEECCCEE
Q 014003 172 FWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD---GTVQLWDCHTGQSASVINLGAEV--GSLICEGPWV 246 (432)
Q Consensus 172 ~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~D---g~v~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~l 246 (432)
.|.++|.+.. . ...+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++........... ....++++.+
T Consensus 180 ~l~~~d~~g~-~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGA-R-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCC-C-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEE
Confidence 4667777654 2 34455677889999999999998876644 36899999988765544333322 3445678776
Q ss_pred EEE--cCC--eEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEE-CCC--cEEEEECCCCCCCccccceeeecccc
Q 014003 247 FVG--MPN--VVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA-QDG--NILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 247 ~~~--~~~--~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~-~dg--~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
+.. .++ .|.++|+.++....+..+........|+++ .++..+ .+| .|+++|+.+++. +.+ ...+.
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~---~~l-t~~~~-- 331 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA---ERV-TFVGN-- 331 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEe-ecCCC--
Confidence 643 233 688899998887666666656667788887 454444 344 577777766542 111 11121
Q ss_pred CeEEEEE--eCCEEEEEeCC-C--eEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeCC-C--cEEEEEcC
Q 014003 318 PVTCLAV--GGKRLYSGSMD-N--TIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLD-N--TIKVWIMT 384 (432)
Q Consensus 318 ~v~~l~~--~~~~l~sgs~d-g--~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d-g--~i~iwd~~ 384 (432)
......| +++.++..+.+ + .|.++|+.+++...........-..++.+|+.++..+.+ + .+.++++.
T Consensus 332 ~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 332 YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 1223344 47887766543 3 588999988765332222111112333346777665543 3 45666664
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.88 E-value=1.1e-07 Score=84.57 Aligned_cols=226 Identities=23% Similarity=0.303 Sum_probs=148.7
Q ss_pred EeeccCceeeCCCCCeEEEEeCCCCcEEEEEE-ecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC----ceeEEEe
Q 014003 157 YHWLSGNCVKGDECRFWHSWFCGEGFTMLAKL-EGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG----QSASVIN 231 (432)
Q Consensus 157 ~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l-~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~----~~~~~~~ 231 (432)
..+....+++.+.|.+++||--.+..+.-..+ ..-..+++++++.++...|+.|-..|++.-+.+... ...+...
T Consensus 32 l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~ 111 (404)
T KOG1409|consen 32 LIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYL 111 (404)
T ss_pred eccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhh
Confidence 34456688999999999999764332222222 223578999999999999999999999988876432 2222222
Q ss_pred -CCCceeeEEE--CCCE-EEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccc
Q 014003 232 -LGAEVGSLIC--EGPW-VFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQ 307 (432)
Q Consensus 232 -~~~~~~~~~~--~~~~-l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~ 307 (432)
+...+..+.+ ...+ +.++.|..+.---.+.+..+.-......-.++.++-.+...|...|.|.+..+.... ..
T Consensus 112 ~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~---~~ 188 (404)
T KOG1409|consen 112 AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNG---CQ 188 (404)
T ss_pred hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecC---Cc
Confidence 3334444433 2233 334444443322333332211000000111111111156677888888887776554 35
Q ss_pred cceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCce-EEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEE
Q 014003 308 LAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA-VMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWI 382 (432)
Q Consensus 308 ~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd 382 (432)
++..+.+|...+++++|+ ...|++|..|..+.+||+--.+- ...+.+|...|..+..- -+.+.+++.||.|.+|+
T Consensus 189 ~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 189 LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEe
Confidence 788899999999999998 77899999999999999875543 45778899988888766 58899999999999999
Q ss_pred cCC
Q 014003 383 MTE 385 (432)
Q Consensus 383 ~~~ 385 (432)
++.
T Consensus 269 mn~ 271 (404)
T KOG1409|consen 269 MNV 271 (404)
T ss_pred ccc
Confidence 873
No 260
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.85 E-value=3.5e-08 Score=84.56 Aligned_cols=203 Identities=15% Similarity=0.235 Sum_probs=130.8
Q ss_pred EEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCce----eEEEeCCCceeeEEECCCEEEEE-
Q 014003 175 SWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS----ASVINLGAEVGSLICEGPWVFVG- 249 (432)
Q Consensus 175 vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~- 249 (432)
.|+-..+..+...+..|+++=.+-+.+-.++.++++..||.+.+.+.+.-.. +..........++...+.++.++
T Consensus 72 ~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~ 151 (319)
T KOG4714|consen 72 LWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGG 151 (319)
T ss_pred hhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCC
Confidence 3444444445566666665544444455677899999999999999765211 11111122222333445555544
Q ss_pred -----cCCeEEEEEccCCceEe-ecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeE
Q 014003 250 -----MPNVVKAWHIESSAEFS-LDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (432)
Q Consensus 250 -----~~~~i~vwd~~~~~~~~-~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 320 (432)
.-+..+.|+++....+. .......|.+++.+|. .+++|+.||.+-+||.+.... +...++.|+.++.
T Consensus 152 ~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~----p~S~l~ahk~~i~ 227 (319)
T KOG4714|consen 152 CGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM----PVSLLKAHKAEIW 227 (319)
T ss_pred cceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc----hHHHHHHhhhhhh
Confidence 33455667666554332 2222334888888876 889999999999999998743 5677889999999
Q ss_pred EEEEe---CCEEEEEeCCCeEEEEECCCCceEE------------------E-------ecCCCCCcEEEEEcCCEEEEE
Q 014003 321 CLAVG---GKRLYSGSMDNTIRVWDLDTLEAVM------------------T-------LNGHTDAPMSLLCWDQYLLSC 372 (432)
Q Consensus 321 ~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~------------------~-------~~~~~~~v~~~~~~~~~l~s~ 372 (432)
.+.|+ +..|+++++||.+--||..+ +.+. . +....-.|.++...|..|++|
T Consensus 228 eV~FHpk~p~~Lft~sedGslw~wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcg 306 (319)
T KOG4714|consen 228 EVHFHPKNPEHLFTCSEDGSLWHWDAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCG 306 (319)
T ss_pred heeccCCCchheeEecCCCcEEEEcCCC-ceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEec
Confidence 99997 78999999999999999874 2111 1 011112344444457888888
Q ss_pred eCCCcEEEEE
Q 014003 373 SLDNTIKVWI 382 (432)
Q Consensus 373 s~dg~i~iwd 382 (432)
+.-+.|++++
T Consensus 307 td~eaIyl~~ 316 (319)
T KOG4714|consen 307 TDAEAIYLTR 316 (319)
T ss_pred cccceEEEec
Confidence 8888877764
No 261
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=4.4e-09 Score=98.71 Aligned_cols=209 Identities=19% Similarity=0.253 Sum_probs=138.2
Q ss_pred EEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-eeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCC
Q 014003 184 MLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ-SASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESS 262 (432)
Q Consensus 184 ~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~ 262 (432)
.+..+.||+..|.+++--.+.+-+++++.|++|++|.++..- .+.+- .
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~ts-------------------------------a 775 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTS-------------------------------A 775 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccc-------------------------------e
Confidence 356788999999999877788889999999999999986431 11100 0
Q ss_pred ceEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEE-eCCEEEEE-eCCCeEEE
Q 014003 263 AEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV-GGKRLYSG-SMDNTIRV 340 (432)
Q Consensus 263 ~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sg-s~dg~I~v 340 (432)
-.++...|..+|.++.+-.+.-.+++.||.|.+||.-.+..-..-.-....+....|.|+.- +...++.| +...+|++
T Consensus 776 CQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl 855 (1034)
T KOG4190|consen 776 CQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKL 855 (1034)
T ss_pred eeeEhhhccCcccceeeeeccceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhhee
Confidence 12456788899999999888656677899999999876643100000111122334555533 34444444 78899999
Q ss_pred EECCCCceEEEec-----CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCC
Q 014003 341 WDLDTLEAVMTLN-----GHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGN 413 (432)
Q Consensus 341 wd~~~~~~~~~~~-----~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~ 413 (432)
+|.+..+-...++ +.++.+.+++.. |+.++++-..|.|.+.|.++++.+.....-....-.++ .|..+
T Consensus 856 ~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-----apsdq 930 (1034)
T KOG4190|consen 856 FDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-----APSDQ 930 (1034)
T ss_pred eecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-----CchhH
Confidence 9999887665553 333446666655 89999999999999999999886654443332222222 24444
Q ss_pred cEEEEEeCCCeEEE-ee
Q 014003 414 PVLICSCNDDSVHL-YE 429 (432)
Q Consensus 414 ~~l~sg~~Dg~I~i-wd 429 (432)
.++....|.++.+ |.
T Consensus 931 -~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 931 -ALAQSALDHSLAVNWH 946 (1034)
T ss_pred -HHHhhcccceeEeeeh
Confidence 5666666666666 54
No 262
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=1.1e-06 Score=85.80 Aligned_cols=200 Identities=13% Similarity=0.019 Sum_probs=115.1
Q ss_pred CcEEEEeCCCCceeEEEeCCCcee--eEEECCCEEEEEc----CCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EE-
Q 014003 214 GTVQLWDCHTGQSASVINLGAEVG--SLICEGPWVFVGM----PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--ML- 284 (432)
Q Consensus 214 g~v~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~----~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l- 284 (432)
..|.++|...............+. .+.++++.++... ...|.+||+.+++...+....+...+..|+|+ .+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 255 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA 255 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 467777875433333333344443 3446887766442 24699999999887666555566778899988 45
Q ss_pred EEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeC-CCeEEEE--ECCCCceEEEecCCCCCc
Q 014003 285 FAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM-DNTIRVW--DLDTLEAVMTLNGHTDAP 359 (432)
Q Consensus 285 ~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~-dg~I~vw--d~~~~~~~~~~~~~~~~v 359 (432)
++.+.+|...+|.+..... ....+..+........|+ |+.|+..+. +|...+| ++.+++... +..+....
T Consensus 256 ~~~~~~g~~~Iy~~d~~~~----~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~ 330 (427)
T PRK02889 256 VALSRDGNSQIYTVNADGS----GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYN 330 (427)
T ss_pred EEEccCCCceEEEEECCCC----CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCc
Confidence 4567788766665433211 123333344444556675 887776554 4555555 445554322 22122222
Q ss_pred EEEEEc--CCEEEEEeCCC---cEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCe
Q 014003 360 MSLLCW--DQYLLSCSLDN---TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDS 424 (432)
Q Consensus 360 ~~~~~~--~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~ 424 (432)
....++ |++|+..+.++ .|.+||+.+++... +... .... ...|+|||+.++++....|.
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~----~p~~spdg~~l~~~~~~~g~ 394 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDE----SPSFAPNGRYILYATQQGGR 394 (427)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCcc----CceECCCCCEEEEEEecCCC
Confidence 234444 78888777654 69999998775432 2221 2222 33459999966666555554
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=2.8e-06 Score=83.47 Aligned_cols=224 Identities=10% Similarity=-0.047 Sum_probs=126.7
Q ss_pred eEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCC-C--cEEEEeCCCCceeEEEeCCCc--eeeEEECCCEE
Q 014003 172 FWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD-G--TVQLWDCHTGQSASVINLGAE--VGSLICEGPWV 246 (432)
Q Consensus 172 ~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~D-g--~v~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~l 246 (432)
.+.++|.+... ...+..+...+.+.+|+|||+.|+..+.+ + .|.+||+.+++.......... ...+.++++.+
T Consensus 199 ~l~i~d~dG~~--~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYN--EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCC--ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEE
Confidence 56667775542 23455667889999999999998876543 3 588899988876444333222 23445688866
Q ss_pred EEE--cCC--eEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEE-EECCC--cEEEEECCCCCCCccccceeeecccc
Q 014003 247 FVG--MPN--VVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFA-GAQDG--NILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 247 ~~~--~~~--~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~-g~~dg--~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
+.. .++ .|.++|+++++...+..+........|+++ .++. ...++ .|+++|+.+++. +.+ ...++.
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~L-t~~g~~- 351 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRL-TFEGEQ- 351 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEE-ecCCCC-
Confidence 543 344 588889988887666666556677888887 4444 43444 466667766542 111 122222
Q ss_pred CeEEEEE--eCCEEEEEeC-CC--eEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeC-CCc--EEEEEcCCCCce
Q 014003 318 PVTCLAV--GGKRLYSGSM-DN--TIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSL-DNT--IKVWIMTEEGNL 389 (432)
Q Consensus 318 ~v~~l~~--~~~~l~sgs~-dg--~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~~ 389 (432)
....+| +|++++..+. ++ .|.++|+.+++...........-.+.+.+++.|+..+. ++. +.+++. +++..
T Consensus 352 -~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~ 429 (448)
T PRK04792 352 -NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFK 429 (448)
T ss_pred -CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCce
Confidence 223345 4777766554 34 56678888876533222211111233334666655543 443 666676 33444
Q ss_pred eEEeeccCCcceEEE
Q 014003 390 EVAYTHNEDHGVLAL 404 (432)
Q Consensus 390 ~~~~~~~~~~~~~~~ 404 (432)
..+..........+|
T Consensus 430 ~~l~~~~g~~~~p~W 444 (448)
T PRK04792 430 ARLPAGQGEVKSPAW 444 (448)
T ss_pred EECcCCCCCcCCCcc
Confidence 444333333333333
No 264
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.84 E-value=1.5e-08 Score=62.71 Aligned_cols=38 Identities=34% Similarity=0.664 Sum_probs=36.5
Q ss_pred EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEe
Q 014003 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWD 220 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd 220 (432)
+++.++++|++.|++|+|+|++++|+|++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
No 265
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.6e-06 Score=82.10 Aligned_cols=205 Identities=12% Similarity=0.127 Sum_probs=139.2
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCC--EEEE-----EeCCCcEEEEeCCCCceeEEEeC----CCceeeE
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSD--KLYS-----GSRDGTVQLWDCHTGQSASVINL----GAEVGSL 239 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~--~l~s-----~s~Dg~v~iWd~~~~~~~~~~~~----~~~~~~~ 239 (432)
+.+++|++.+.......| |...|+.++++|.+. .+|+ .|.-..|+||.......-..... ...-..+
T Consensus 146 nev~f~~~~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm 223 (566)
T KOG2315|consen 146 NEVQFYDLGSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQM 223 (566)
T ss_pred ceEEEEecCCccceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEE
Confidence 459999997754444444 688999999998743 3433 35567899998763222111111 1111112
Q ss_pred EE--CCC--EEEEE-----------cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC----EEEEEECCCcEEEEECCC
Q 014003 240 IC--EGP--WVFVG-----------MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIP 300 (432)
Q Consensus 240 ~~--~~~--~l~~~-----------~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~~wd~~~ 300 (432)
.. .+. +++++ +...+++++++...........++|.++.|+++ -++.|-.-.++.+||++.
T Consensus 224 ~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~ 303 (566)
T KOG2315|consen 224 KWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG 303 (566)
T ss_pred EeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC
Confidence 21 111 22222 234788888885555555566899999999998 344577788999999886
Q ss_pred CCCCccccceeeeccccCeEEEEEe--CCEEEEEeCC---CeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeC-
Q 014003 301 NTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMD---NTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSL- 374 (432)
Q Consensus 301 ~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d---g~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~- 374 (432)
. ++..+ ..++=.++-|+ |++++.++-+ |.|-|||+.+.+++..+......+...+.+|.+|+++..
T Consensus 304 ~------~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 304 K------PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred C------EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEecc
Confidence 4 34433 45666778887 8998887754 799999999999999998777766666666999999875
Q ss_pred -----CCcEEEEEcCC
Q 014003 375 -----DNTIKVWIMTE 385 (432)
Q Consensus 375 -----dg~i~iwd~~~ 385 (432)
|+.++||+...
T Consensus 376 PRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 376 PRLRVDNGIKIWHYTG 391 (566)
T ss_pred ccEEecCCeEEEEecC
Confidence 78899999854
No 266
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.80 E-value=6e-06 Score=80.72 Aligned_cols=203 Identities=14% Similarity=0.031 Sum_probs=121.3
Q ss_pred CcEEEEeCCCCceeEEEeCCCcee--eEEECCCEEEEEc----CCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEE
Q 014003 214 GTVQLWDCHTGQSASVINLGAEVG--SLICEGPWVFVGM----PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLF 285 (432)
Q Consensus 214 g~v~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~----~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~ 285 (432)
..|.++|...............+. .+.++++.++... ...|++||+.+++..........+.++.|+++ .++
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 358888886555444444333333 2346788776542 25799999999876666666666777889888 444
Q ss_pred -EEECCC--cEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCC-C--eEEEEECCCCceEEEecCCCC
Q 014003 286 -AGAQDG--NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMD-N--TIRVWDLDTLEAVMTLNGHTD 357 (432)
Q Consensus 286 -~g~~dg--~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d-g--~I~vwd~~~~~~~~~~~~~~~ 357 (432)
+.+.++ .|++||+.++.. ..+..+........|+ ++.|+..+.. + .|+++|+.+++.. .+..+..
T Consensus 250 ~~~~~~~~~~i~~~d~~~~~~------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~ 322 (417)
T TIGR02800 250 VSLSKDGNPDIYVMDLDGKQL------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGG 322 (417)
T ss_pred EEECCCCCccEEEEECCCCCE------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC
Confidence 445444 588889877642 2233333333345564 7777665543 3 6888898877643 3433444
Q ss_pred CcEEEEEc--CCEEEEEeCCC---cEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCe--EEEee
Q 014003 358 APMSLLCW--DQYLLSCSLDN---TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDS--VHLYE 429 (432)
Q Consensus 358 ~v~~~~~~--~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~--I~iwd 429 (432)
......++ +++|+.++.++ .|.+||+.++.. ..+... ..... ..|+|+|+.++++...++. +.+.+
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~----p~~spdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDES----PSFAPNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCC----ceECCCCCEEEEEEeCCCcEEEEEEE
Confidence 45555565 78888887776 788999877433 222221 11222 2458999955555444433 44444
No 267
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.80 E-value=5.4e-07 Score=81.97 Aligned_cols=154 Identities=14% Similarity=0.165 Sum_probs=108.2
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCc----eeEEEeCCCceeeEE---ECCCEEEEEc---CCeEEEEEccCCceE
Q 014003 196 SGIALPLRSDKLYSGSRDGTVQLWDCHTGQ----SASVINLGAEVGSLI---CEGPWVFVGM---PNVVKAWHIESSAEF 265 (432)
Q Consensus 196 ~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~----~~~~~~~~~~~~~~~---~~~~~l~~~~---~~~i~vwd~~~~~~~ 265 (432)
..+..++.+++||.+..+....+.+..... .............+. .+...+++-. ...+.+|....+...
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence 344456777888887777776666654332 333333333322222 3444444443 345556666657777
Q ss_pred eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe-CCEEEEEeCCCeEEEEE
Q 014003 266 SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWD 342 (432)
Q Consensus 266 ~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~vwd 342 (432)
...+|...++.+++++| +++++..|..|++-....... .-.-.-||+.-|..++.- +..|++|+.|++|++||
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~----IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV----IESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWD 221 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc----hhhhccccHhheeeeeeccCceeeecCCCCcEEEEe
Confidence 88899999999999999 999999999999987665421 222234799999999886 67789999999999999
Q ss_pred CCCCceEEEec
Q 014003 343 LDTLEAVMTLN 353 (432)
Q Consensus 343 ~~~~~~~~~~~ 353 (432)
+++|+++.++.
T Consensus 222 ~~sgk~L~t~d 232 (390)
T KOG3914|consen 222 ITSGKLLDTCD 232 (390)
T ss_pred cccCCcccccc
Confidence 99999987664
No 268
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.79 E-value=4.3e-08 Score=95.18 Aligned_cols=189 Identities=17% Similarity=0.254 Sum_probs=138.9
Q ss_pred cCcEEEEEecCCCCEEEEEeCCCcEEEEeCCC-CceeEEEeCCCc--eeeEE-----ECCCEEEEEcCCeEEEEEccCCc
Q 014003 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT-GQSASVINLGAE--VGSLI-----CEGPWVFVGMPNVVKAWHIESSA 263 (432)
Q Consensus 192 ~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~~--~~~~~-----~~~~~l~~~~~~~i~vwd~~~~~ 263 (432)
.+++.++.++|.|+-+|.++.-| +.+-|+.. ....+-+.+-.+ +.... ....+++......-.+|++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 46788889999999999999877 45566653 344444443322 12222 23445666667777788876432
Q ss_pred ----eEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeC
Q 014003 264 ----EFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM 334 (432)
Q Consensus 264 ----~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~ 334 (432)
.+.+.+|...|+.+.|++. .+++++.|-.+..||++... .++.....-......++|+ ...+.+.+.
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~----~p~ys~~~w~s~asqVkwnyk~p~vlassh 178 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH----RPFYSTSSWRSAASQVKWNYKDPNVLASSH 178 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC----cceeeeecccccCceeeecccCcchhhhcc
Confidence 4567899999999999865 99999999999999999874 3455555555566778887 444555566
Q ss_pred CCeEEEEECCCC-ceEEEecCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEcCC
Q 014003 335 DNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 335 dg~I~vwd~~~~-~~~~~~~~~~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~ 385 (432)
...|++||++.| .++..+++|...+..+.+. ...+++++.|++|+.||...
T Consensus 179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 778999999875 5788999998888888887 47899999999999999763
No 269
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.79 E-value=3.6e-08 Score=87.11 Aligned_cols=212 Identities=14% Similarity=0.104 Sum_probs=137.2
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--ECCCEEEEE--cCCeEEEEEccCCceE-eecCCcC
Q 014003 198 IALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVFVG--MPNVVKAWHIESSAEF-SLDGPVG 272 (432)
Q Consensus 198 l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~--~~~~i~vwd~~~~~~~-~~~~~~~ 272 (432)
.+|+|+|+++|+++.- .+.|-|.++-+..+.+..-..+..+. .+..++.++ .++.|.+|++...+-. .......
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a 92 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA 92 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence 5789999999999876 78899988877655544333333333 355555544 7889999999988743 5666778
Q ss_pred CEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCe---EEEEECC
Q 014003 273 EVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNT---IRVWDLD 344 (432)
Q Consensus 273 ~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~---I~vwd~~ 344 (432)
.+.++.|+|+ .+.+...+-.|.+|.+.+.+. ..++-....+..++|+ |++.+..+.-.. +.+..-.
T Consensus 93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~------~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~ 166 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG------YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK 166 (447)
T ss_pred cceeeeECCCcceEeeeecceeEEEEEEecccee------EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhH
Confidence 8999999998 677888899999999988753 2222222333455564 888887765321 2222223
Q ss_pred CCceEEEecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCe
Q 014003 345 TLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDS 424 (432)
Q Consensus 345 ~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~ 424 (432)
....+..+.-.+...+.+.|++ .+..+.+||---.-.+.. +...-.+..+.+ +|.++ +|+.|+.|+.
T Consensus 167 ~W~ll~~f~~dT~DltgieWsP-------dg~~laVwd~~Leykv~a-Ye~~lG~k~v~w----sP~~q-flavGsyD~~ 233 (447)
T KOG4497|consen 167 AWILLKEFKLDTIDLTGIEWSP-------DGNWLAVWDNVLEYKVYA-YERGLGLKFVEW----SPCNQ-FLAVGSYDQM 233 (447)
T ss_pred HHHHHHhcCCCcccccCceECC-------CCcEEEEecchhhheeee-eeeccceeEEEe----ccccc-eEEeeccchh
Confidence 3444555655555566676663 233455776543322221 122223334444 89999 9999999999
Q ss_pred EEEee
Q 014003 425 VHLYE 429 (432)
Q Consensus 425 I~iwd 429 (432)
+||.+
T Consensus 234 lrvln 238 (447)
T KOG4497|consen 234 LRVLN 238 (447)
T ss_pred hhhhc
Confidence 98854
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.78 E-value=1.5e-05 Score=85.82 Aligned_cols=230 Identities=17% Similarity=0.218 Sum_probs=136.9
Q ss_pred EEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC---------------ceeeE--EECCCEEEEE--cCCeEE
Q 014003 196 SGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGA---------------EVGSL--ICEGPWVFVG--MPNVVK 255 (432)
Q Consensus 196 ~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~---------------~~~~~--~~~~~~l~~~--~~~~i~ 255 (432)
..+++++ +++.+++-+.++.|+++|.. ++.+..+.... ....+ ..++..++++ ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 4678876 46677777888999999986 44444333211 01222 2345544443 456889
Q ss_pred EEEccCCceEeecCC-----------------cCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccc---cceee
Q 014003 256 AWHIESSAEFSLDGP-----------------VGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQ---LAALL 312 (432)
Q Consensus 256 vwd~~~~~~~~~~~~-----------------~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~---~~~~~ 312 (432)
++|+.++....+.+. ...-..++++++ ++++...++.|++||..++....+. .....
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~ 729 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL 729 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence 999887765433211 112356888873 5666778899999998765310000 00000
Q ss_pred ecc------ccCeEEEEEe--CC-EEEEEeCCCeEEEEECCCCceEEEecC-------------C--------CCCcEEE
Q 014003 313 KGH------TRPVTCLAVG--GK-RLYSGSMDNTIRVWDLDTLEAVMTLNG-------------H--------TDAPMSL 362 (432)
Q Consensus 313 ~~h------~~~v~~l~~~--~~-~l~sgs~dg~I~vwd~~~~~~~~~~~~-------------~--------~~~v~~~ 362 (432)
.++ -.....|+++ ++ .+++-+.++.|++||++++.......+ + -.....+
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 011 1123457776 56 455566679999999987654211100 0 0123455
Q ss_pred EEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeecc--------------CCcceEEEeeeeCCCCCcEEEEEeCCCeEE
Q 014003 363 LCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN--------------EDHGVLALGGLNDPDGNPVLICSCNDDSVH 426 (432)
Q Consensus 363 ~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--------------~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~ 426 (432)
+++ ++.+++-+.+++|++||..++.... +.+.. .....+++ +++|+ ++++-+.++.|+
T Consensus 810 avd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIav----d~dG~-lyVaDt~Nn~Ir 883 (1057)
T PLN02919 810 LCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLAL----GENGR-LFVADTNNSLIR 883 (1057)
T ss_pred eEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEE----eCCCC-EEEEECCCCEEE
Confidence 555 6788888889999999997764432 22111 12233444 79998 888888999999
Q ss_pred EeeCCC
Q 014003 427 LYELPS 432 (432)
Q Consensus 427 iwdl~s 432 (432)
+||+.+
T Consensus 884 vid~~~ 889 (1057)
T PLN02919 884 YLDLNK 889 (1057)
T ss_pred EEECCC
Confidence 999864
No 271
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.78 E-value=7e-08 Score=93.74 Aligned_cols=277 Identities=17% Similarity=0.210 Sum_probs=168.6
Q ss_pred CCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCCC
Q 014003 91 KSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDEC 170 (432)
Q Consensus 91 ~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 170 (432)
+.+..+..+|-|+-+|.++.-|-.-+ |+..|..... ..+ ..++ +.+.. ....-++..+.-+.....
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl~i~-dld~p~~ppr-~l~-----h~tp---w~vad----~qws~h~a~~~wiVsts~ 90 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGLYII-DLDDPFTPPR-WLH-----HITP---WQVAD----VQWSPHPAKPYWIVSTSN 90 (1081)
T ss_pred CcccceeeccccchhhhhhhcCeEEE-eccCCCCCce-eee-----ccCc---chhcc----eecccCCCCceeEEecCc
Confidence 34577788899999999887665543 4444432100 000 0000 00000 011111112222222222
Q ss_pred CeEEEEeCC--CCcEEEEEEecccCcEEEEEecCC-CCEEEEEeCCCcEEEEeCCCCce-eEEEeC-CCceeeEE---EC
Q 014003 171 RFWHSWFCG--EGFTMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQS-ASVINL-GAEVGSLI---CE 242 (432)
Q Consensus 171 ~~i~vw~~~--~~~~~~~~l~~H~~~V~~l~~~~~-~~~l~s~s~Dg~v~iWd~~~~~~-~~~~~~-~~~~~~~~---~~ 242 (432)
..-.+|++. +.......+.||..+|+.+-|.|. ...|++++.|-.+..||+++-.. ...... ......+. -+
T Consensus 91 qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~ 170 (1081)
T KOG0309|consen 91 QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD 170 (1081)
T ss_pred chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC
Confidence 334577773 233455567899999999999875 46799999999999999987543 222221 11122222 36
Q ss_pred CCEEEEEcCCeEEEEEccCCc--eEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeecccc
Q 014003 243 GPWVFVGMPNVVKAWHIESSA--EFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 243 ~~~l~~~~~~~i~vwd~~~~~--~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
+..++.+..+.|.+||.+.+. .....++...|+.+++..- .+.+.+.||+|+.||........ .+.. ....
T Consensus 171 p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~---~~~v-tt~~ 246 (1081)
T KOG0309|consen 171 PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES---KRTV-TTNF 246 (1081)
T ss_pred cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc---ceec-cccC
Confidence 777888889999999999876 3467788888999988765 89999999999999987765321 1111 1122
Q ss_pred CeE-----------EEEEe--CCEEEEEeCCCeEEEEECCC-CceEEEecCCCCCcEEEEEc------------CCEEEE
Q 014003 318 PVT-----------CLAVG--GKRLYSGSMDNTIRVWDLDT-LEAVMTLNGHTDAPMSLLCW------------DQYLLS 371 (432)
Q Consensus 318 ~v~-----------~l~~~--~~~l~sgs~dg~I~vwd~~~-~~~~~~~~~~~~~v~~~~~~------------~~~l~s 371 (432)
+|. ++-+. ++.+.---.+..-..|+..+ .+++++|.||...|..+.|- +-.|++
T Consensus 247 piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVT 326 (1081)
T KOG0309|consen 247 PIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVT 326 (1081)
T ss_pred cceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEE
Confidence 222 22222 22222222233333444433 46799999999998877664 126999
Q ss_pred EeCCCcEEEEEcCC
Q 014003 372 CSLDNTIKVWIMTE 385 (432)
Q Consensus 372 ~s~dg~i~iwd~~~ 385 (432)
=|.|..+++|-+.+
T Consensus 327 WSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 327 WSKDQTLRLWPIDS 340 (1081)
T ss_pred eecCCceEeeeccH
Confidence 99999999998764
No 272
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.75 E-value=2.4e-05 Score=73.50 Aligned_cols=317 Identities=12% Similarity=0.074 Sum_probs=170.9
Q ss_pred CCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCC----CCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 89 HKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRT----VPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 89 h~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
-.-++..+.+||.|++|++...- .|.+|.-+..... .+....++.+.. +.....-...+ .+ ++....
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~~V~~~~fSP~----~kYL~tw~~~p-i~--~pe~e~- 101 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHPDVKYLDFSPN----EKYLVTWSREP-II--EPEIEI- 101 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeeeecCCceecccCcc----cceeeeeccCC-cc--Chhhcc-
Confidence 44567889999999999999854 4778843332210 111111111111 00000000000 00 111111
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCc--EE-EEEecCCCCEEEEEeCCCcEEEEeCCCCceeE-EEe-C-CCceee
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKA--VS-GIALPLRSDKLYSGSRDGTVQLWDCHTGQSAS-VIN-L-GAEVGS 238 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~--V~-~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~-~~~-~-~~~~~~ 238 (432)
.--..+..+.+||..++ ..+..+.+-..+ .. -+.|+.+.+|+|=-. ...+.|+++ ++.... .+. . ...+..
T Consensus 102 sp~~~~n~~~vwd~~sg-~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~d 178 (561)
T COG5354 102 SPFTSKNNVFVWDIASG-MIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLRPVGILD 178 (561)
T ss_pred CCccccCceeEEeccCc-eeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccCchhhccccceee
Confidence 11112236999999998 778888777666 44 577888887766553 346899997 332211 110 0 111222
Q ss_pred EE--E--CCCEEEE------EcCCeEEEEEccCCceEeecC-CcCCEEEEEEcCC--EEE--EE--E-------CCCcEE
Q 014003 239 LI--C--EGPWVFV------GMPNVVKAWHIESSAEFSLDG-PVGEVYSMVVANE--MLF--AG--A-------QDGNIL 294 (432)
Q Consensus 239 ~~--~--~~~~l~~------~~~~~i~vwd~~~~~~~~~~~-~~~~v~~l~~~~~--~l~--~g--~-------~dg~i~ 294 (432)
+. + ++.-++. +.+..+++|.+..+..+.... ....-..+.|++. +++ +- . ....++
T Consensus 179 FsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLy 258 (561)
T COG5354 179 FSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLY 258 (561)
T ss_pred EEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEE
Confidence 22 2 2222221 356788888887666543221 1112234455443 211 11 1 125688
Q ss_pred EEECCCCCCCccccceeeeccccCeEEEEEe--CCEE--EEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEE
Q 014003 295 VWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRL--YSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLL 370 (432)
Q Consensus 295 ~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l--~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 370 (432)
++++.... +.....-.++|..++|+ ++.+ ++|-.+-.+.++|++.. ....+......-..++..+++++
T Consensus 259 l~~~~e~~------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il 331 (561)
T COG5354 259 LLRITERS------IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYIL 331 (561)
T ss_pred EEeecccc------cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcccEEE
Confidence 88887443 22222557899999995 4444 44568899999999865 55544433332233333478999
Q ss_pred EEeCC---CcEEEEEcCCCCcee-EEeeccCCcceEEEeeeeCCCCCcEEEEE------eCCCeEEEeeCC
Q 014003 371 SCSLD---NTIKVWIMTEEGNLE-VAYTHNEDHGVLALGGLNDPDGNPVLICS------CNDDSVHLYELP 431 (432)
Q Consensus 371 s~s~d---g~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~sp~g~~~l~sg------~~Dg~I~iwdl~ 431 (432)
.++.| |.|-+||....-.+. .+.+.+ +-.+.|+||++ ++.+. -.|..|.|||+.
T Consensus 332 ~agF~nl~gni~i~~~~~rf~~~~~~~~~n------~s~~~wspd~q-F~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 332 FAGFDNLQGNIEIFDPAGRFKVAGAFNGLN------TSYCDWSPDGQ-FYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred EecCCccccceEEeccCCceEEEEEeecCC------ceEeeccCCce-EEEecCCCcccccCcceEEEEec
Confidence 88876 679999987654443 222221 12234699999 55444 257889999974
No 273
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.73 E-value=1.8e-05 Score=69.47 Aligned_cols=224 Identities=13% Similarity=0.114 Sum_probs=117.4
Q ss_pred ceeeCCCCCeEEEEeCCCCcEE-EEEEeccc---CcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceee
Q 014003 163 NCVKGDECRFWHSWFCGEGFTM-LAKLEGHK---KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS 238 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~-~~~l~~H~---~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~ 238 (432)
.+++.-.|..|.|-...+++.. +...+-.+ -.=..++|+||+.+||.+...|+|+++|+.. ..+..++.....
T Consensus 10 k~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~-- 86 (282)
T PF15492_consen 10 KLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSF-- 86 (282)
T ss_pred cEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCccccc--
Confidence 4455555666666666544322 23333333 2346799999999999999999999999975 333333321100
Q ss_pred EEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcC-----C---EEEEEECCCcEEEEECCCCCCCccccce
Q 014003 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN-----E---MLFAGAQDGNILVWKGIPNTQNPFQLAA 310 (432)
Q Consensus 239 ~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~-----~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~ 310 (432)
.......|..|.|-+ . .|++-..+|.++-|-+..++...++...
T Consensus 87 ----------------------------~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~h 138 (282)
T PF15492_consen 87 ----------------------------PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENH 138 (282)
T ss_pred ----------------------------CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeE
Confidence 001122233333321 1 5777788888888876544332233333
Q ss_pred eee---ccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc---CCEEE-EEeCCCc----
Q 014003 311 LLK---GHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW---DQYLL-SCSLDNT---- 377 (432)
Q Consensus 311 ~~~---~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~-s~s~dg~---- 377 (432)
.+. .+...|.++.++ .+.|++|+.... +.+. -++....+++-..- +.+.. +...|+.
T Consensus 139 sfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~ 208 (282)
T PF15492_consen 139 SFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASS 208 (282)
T ss_pred EEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccc
Confidence 332 246689999998 456666654322 0000 00112222222222 12222 2222221
Q ss_pred --EEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 378 --IKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 378 --i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
-.+|.+-+.+...........+-.+.+ ||||+ +|++...+|.|.+|++++
T Consensus 209 ~~~~~~~~~~~~~fs~~~~~~d~i~kmSl----SPdg~-~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 209 KRRGLLRIPSFKFFSRQGQEQDGIFKMSL----SPDGS-LLACIHFSGSLSLWEIPS 260 (282)
T ss_pred cccceeeccceeeeeccccCCCceEEEEE----CCCCC-EEEEEEcCCeEEEEecCc
Confidence 123332221111111112333334444 99999 999999999999999986
No 274
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.73 E-value=2.1e-07 Score=92.63 Aligned_cols=179 Identities=16% Similarity=0.186 Sum_probs=130.0
Q ss_pred CCEEEEEcCCeEEEEEccCCceEeecCCcC-CEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEE
Q 014003 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVG-EVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (432)
Q Consensus 243 ~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~-~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 321 (432)
..++.++....+..+|+.+.++.....-.. .+.-|..++..+.+|...|+|.+-|.++. +.++++..|.+.|..
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~-----~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSF-----ETIHTFDAHSGSISD 222 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcC-----ceeeeeeccccceee
Confidence 345555677777788888777665443333 57778888789999999999999998884 568999999999999
Q ss_pred EEEeCCEEEEEeC---------CCeEEEEECCCCceEEEecCCCCC-cEEEEEc-CCEEEEEeCCCcEEEEEcCCCCce-
Q 014003 322 LAVGGKRLYSGSM---------DNTIRVWDLDTLEAVMTLNGHTDA-PMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNL- 389 (432)
Q Consensus 322 l~~~~~~l~sgs~---------dg~I~vwd~~~~~~~~~~~~~~~~-v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~- 389 (432)
+...|+.|++++. |..|+|||+|+.+.+..+.-+.++ ...+... ...++.++..|...+-|..+-...
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~ 302 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP 302 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCc
Confidence 9999999999875 567899999998887777655554 2222222 578899999999999994432221
Q ss_pred -eEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 390 -EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 390 -~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
.....+.......+ +..|++|+ .++.|..+|.|.+|.
T Consensus 303 ~~~~~v~p~~s~i~~--fDiSsn~~-alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 303 AGVKMVNPNGSGISA--FDISSNGD-ALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeEEccCCCccee--EEecCCCc-eEEEecccCcEeeec
Confidence 22222222211222 23388888 999999999999995
No 275
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.72 E-value=8.9e-05 Score=67.14 Aligned_cols=255 Identities=15% Similarity=0.180 Sum_probs=153.1
Q ss_pred CCeEEEEeCCCC--cEEEEEEecccCcEEEEEecCCCCEEEEEeCC---CcEEEEeCCC--CceeEE--EeCCC-c--ee
Q 014003 170 CRFWHSWFCGEG--FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD---GTVQLWDCHT--GQSASV--INLGA-E--VG 237 (432)
Q Consensus 170 d~~i~vw~~~~~--~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~D---g~v~iWd~~~--~~~~~~--~~~~~-~--~~ 237 (432)
+.-|++|++++. ......+-.+.+..+-|+|+|++++|+++-.+ |.|..+.++. |..... ..... + -.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 456999999643 22223344677889999999999999998665 6777776654 443222 22222 2 22
Q ss_pred eEEECCCEEEEE--cCCeEEEEEccC-CceE---eecCCcCC----------EEEEEEcCC--EEEEEE-CCCcEEEEEC
Q 014003 238 SLICEGPWVFVG--MPNVVKAWHIES-SAEF---SLDGPVGE----------VYSMVVANE--MLFAGA-QDGNILVWKG 298 (432)
Q Consensus 238 ~~~~~~~~l~~~--~~~~i~vwd~~~-~~~~---~~~~~~~~----------v~~l~~~~~--~l~~g~-~dg~i~~wd~ 298 (432)
++..++++++++ ..+.|.++-++. +... ....|.+. +....+.|+ ++++.. .--.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 344578888876 578999998865 3322 22333333 667778887 444433 3347999999
Q ss_pred CCCCCCccccceeeeccccCeEEEEEe--CCEEEEEe-CCCeEEEEECCCC-ce---EEEec----CCCC--CcEEEEEc
Q 014003 299 IPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGS-MDNTIRVWDLDTL-EA---VMTLN----GHTD--APMSLLCW 365 (432)
Q Consensus 299 ~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs-~dg~I~vwd~~~~-~~---~~~~~----~~~~--~v~~~~~~ 365 (432)
..+...+...... .....-+-|.|+ +++.+..+ -+++|.+|..... .. ++++. ...+ ....+..+
T Consensus 175 ~dg~L~~~~~~~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 175 DDGKLTPADPAEV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred ccCcccccccccc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 9776433222222 223445678886 77776655 4899999998873 22 22221 1111 23333333
Q ss_pred --CCEEEEEeC-CCcEEEEEcCCCCceeEEee----ccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 366 --DQYLLSCSL-DNTIKVWIMTEEGNLEVAYT----HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 366 --~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
|++|.++.. ...|-+|.+........+.. +........+ +|.|+.+++++-++..|.+|..
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i----~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNI----NPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcccee----CCCCCEEEEEccCCCcEEEEEE
Confidence 788887753 44788888876644333332 2222333444 8999955555555667888864
No 276
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=5.6e-08 Score=86.51 Aligned_cols=138 Identities=17% Similarity=0.164 Sum_probs=104.5
Q ss_pred EEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCC-----ceEEEecCCC
Q 014003 284 LFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL-----EAVMTLNGHT 356 (432)
Q Consensus 284 l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~-----~~~~~~~~~~ 356 (432)
-++.+.+..+.+-|+.++-. +.+. ..+.|.++.|. ++.+..|+.+|.|.++|++.+ .+.+.+. |.
T Consensus 227 hfs~G~sqqv~L~nvetg~~------qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~ 298 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQ------QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HD 298 (425)
T ss_pred eecccccceeEEEEeecccc------cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cC
Confidence 36667778888999888743 2233 45667777775 899999999999999999875 3455554 78
Q ss_pred CCcEEEE---EcCCEEEEEeCCCcEEEEEcCCCCc---eeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 357 DAPMSLL---CWDQYLLSCSLDNTIKVWIMTEEGN---LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 357 ~~v~~~~---~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
..|+++. +++++|++.+.+|+|++||++.-++ +..+.+|.....-+.+.. .+... +++++++|...|||.+
T Consensus 299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v--~~eeg-~I~s~GdDcytRiWsl 375 (425)
T KOG2695|consen 299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHV--KEEEG-SIFSVGDDCYTRIWSL 375 (425)
T ss_pred cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccc--ccccc-eEEEccCeeEEEEEec
Confidence 8887765 4589999999999999999998777 777777766544433321 45555 7888999999999998
Q ss_pred CC
Q 014003 431 PS 432 (432)
Q Consensus 431 ~s 432 (432)
.+
T Consensus 376 ~~ 377 (425)
T KOG2695|consen 376 DS 377 (425)
T ss_pred cc
Confidence 63
No 277
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.69 E-value=1e-05 Score=69.96 Aligned_cols=213 Identities=11% Similarity=0.025 Sum_probs=138.8
Q ss_pred EEEEeCCCCcEEEEEEecccCcEEEEEecC-----CCCEEEEEeCCCcEEEEeCCCCceeEEE-eCCCc-eee----EEE
Q 014003 173 WHSWFCGEGFTMLAKLEGHKKAVSGIALPL-----RSDKLYSGSRDGTVQLWDCHTGQSASVI-NLGAE-VGS----LIC 241 (432)
Q Consensus 173 i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~-----~~~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~-~~~----~~~ 241 (432)
+-+|+..+..+.+..+- +.+.|-| ...+||.|+.-|...+|.+.+.+....+ ..... +.- ...
T Consensus 54 v~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~ 127 (344)
T KOG4532|consen 54 VPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL 127 (344)
T ss_pred eEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc
Confidence 56677654432222221 3345544 4468999999999999999876543322 22111 111 112
Q ss_pred CCCEEEEEcCCeEEEEEccCCceEe-ecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccce-eeecccc
Q 014003 242 EGPWVFVGMPNVVKAWHIESSAEFS-LDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAA-LLKGHTR 317 (432)
Q Consensus 242 ~~~~l~~~~~~~i~vwd~~~~~~~~-~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~-~~~~h~~ 317 (432)
..+++.++.|..+++.+++.+.... .....-.+.+++++++ ++++.+....|..|.+...... ... .....++
T Consensus 128 ~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey---~~~~~~a~t~D 204 (344)
T KOG4532|consen 128 KFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY---IENIYEAPTSD 204 (344)
T ss_pred ccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccce---eeeeEecccCC
Confidence 4456778888888888876554221 1111133788888888 8888899999999998876532 222 2222334
Q ss_pred CeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEE-----EecCCCCCcEEEEEc--C--CEEEEEeCCCcEEEEEcCCC
Q 014003 318 PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVM-----TLNGHTDAPMSLLCW--D--QYLLSCSLDNTIKVWIMTEE 386 (432)
Q Consensus 318 ~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~-----~~~~~~~~v~~~~~~--~--~~l~s~s~dg~i~iwd~~~~ 386 (432)
.-.+..|+ ...+|+++.||++.|||++...... +-..|.+.+..+.|+ | ++|+-.-.-+.+.+-|+++.
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 44566776 6789999999999999998754322 234588889999998 2 56666666788999999998
Q ss_pred CceeEEee
Q 014003 387 GNLEVAYT 394 (432)
Q Consensus 387 ~~~~~~~~ 394 (432)
...+.+..
T Consensus 285 ~~~q~I~i 292 (344)
T KOG4532|consen 285 VNHQVIVI 292 (344)
T ss_pred ceeeEEec
Confidence 87666543
No 278
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.68 E-value=8.6e-05 Score=69.43 Aligned_cols=228 Identities=9% Similarity=-0.001 Sum_probs=140.4
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecc-------cCcEEEEEecCCCCEEEEEe-C-CCcEEEEeCCCCceeEEEeCC
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGH-------KKAVSGIALPLRSDKLYSGS-R-DGTVQLWDCHTGQSASVINLG 233 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H-------~~~V~~l~~~~~~~~l~s~s-~-Dg~v~iWd~~~~~~~~~~~~~ 233 (432)
...-|..+..|.+||..+. +.+..+.-- ...-..++++|||++|+... . +..|-+.|+.+++.+..+...
T Consensus 69 R~~~G~~~d~V~v~D~~t~-~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 69 RIARGKRTDYVEVIDPQTH-LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred ccccCCCCCEEEEEECccC-cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC
Confidence 3455567899999999987 667666531 22334788899999998766 3 689999999999999999875
Q ss_pred CceeeE-EECCCEEEEEcCCeEEEEEccCCceEe------ecCCcCCEE---EEEE-cCCEEEEEECCCcEEEEECCCCC
Q 014003 234 AEVGSL-ICEGPWVFVGMPNVVKAWHIESSAEFS------LDGPVGEVY---SMVV-ANEMLFAGAQDGNILVWKGIPNT 302 (432)
Q Consensus 234 ~~~~~~-~~~~~~l~~~~~~~i~vwd~~~~~~~~------~~~~~~~v~---~l~~-~~~~l~~g~~dg~i~~wd~~~~~ 302 (432)
....-. ..+..+.+.+.|+......+....... +......+. .... ...++++..+ |+|.+.|+....
T Consensus 148 ~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~ 226 (352)
T TIGR02658 148 DCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGD 226 (352)
T ss_pred CCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCc
Confidence 533222 234444455555555544333221110 001000000 1111 1225555555 999999976543
Q ss_pred CCccccceeeec-------cccCeEEEEEe--CCEEEEEe----------CCCeEEEEECCCCceEEEecCCCCCcEEEE
Q 014003 303 QNPFQLAALLKG-------HTRPVTCLAVG--GKRLYSGS----------MDNTIRVWDLDTLEAVMTLNGHTDAPMSLL 363 (432)
Q Consensus 303 ~~~~~~~~~~~~-------h~~~v~~l~~~--~~~l~sgs----------~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~ 363 (432)
....+....+.. ......-++++ ++.+++.. ..+.|.++|.++++.+..+.. ...+..+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~ia 305 (352)
T TIGR02658 227 AKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSIN 305 (352)
T ss_pred ceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEE
Confidence 321222221111 12222336665 77777743 125799999999999998873 23556666
Q ss_pred Ec--CC-EEEEEe-CCCcEEEEEcCCCCceeEEe
Q 014003 364 CW--DQ-YLLSCS-LDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 364 ~~--~~-~l~s~s-~dg~i~iwd~~~~~~~~~~~ 393 (432)
++ ++ +|++.. .++.|.++|+.+.+.+..+.
T Consensus 306 vS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 306 VSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred ECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 66 56 776665 67889999999998887763
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.66 E-value=4.6e-06 Score=72.10 Aligned_cols=193 Identities=10% Similarity=0.031 Sum_probs=130.2
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEe-cCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC---Cce
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIAL-PLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG---AEV 236 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~-~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~---~~~ 236 (432)
...++.|+..|...+|...+..........|...|+-+.= .-..-.+..++.|.++++.+++.+......... ...
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 3478899999999999998764555555566655543321 112334777888999999988765443333322 222
Q ss_pred eeEEECCCEEEE-EcCCeEEEEEccCCceEe----ecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccc
Q 014003 237 GSLICEGPWVFV-GMPNVVKAWHIESSAEFS----LDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLA 309 (432)
Q Consensus 237 ~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~~----~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~ 309 (432)
..+..++.+.++ +....|-.|.+....... .......-.+..|+.+ .+|++.+||++.+||++..........
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 344467887764 566788888887665432 2233334456666665 899999999999999988654333334
Q ss_pred eeeeccccCeEEEEEe----CCEEEEEeCCCeEEEEECCCCceEEEec
Q 014003 310 ALLKGHTRPVTCLAVG----GKRLYSGSMDNTIRVWDLDTLEAVMTLN 353 (432)
Q Consensus 310 ~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~vwd~~~~~~~~~~~ 353 (432)
.+-..|.+++..+.|+ -.+|+..-.-+.+.|.|+++++-.+.+.
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 4455689999999998 3456666667899999999988766553
No 280
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=4e-05 Score=75.27 Aligned_cols=204 Identities=13% Similarity=0.079 Sum_probs=119.2
Q ss_pred cEEEEeCCCCceeEEEeCCCcee--eEEECCCEEEE-Ec---CCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEE-
Q 014003 215 TVQLWDCHTGQSASVINLGAEVG--SLICEGPWVFV-GM---PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLF- 285 (432)
Q Consensus 215 ~v~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~l~~-~~---~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~- 285 (432)
.|.++|.+.+...........+. ...++++.++. +. ...|.+|++.+++...+....+......|+|+ .++
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence 47888887665544444544444 34467877654 32 24789999998877665555555667889887 444
Q ss_pred EEECCC--cEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeC-CC--eEEEEECCCCceEEEe-cCCCC
Q 014003 286 AGAQDG--NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM-DN--TIRVWDLDTLEAVMTL-NGHTD 357 (432)
Q Consensus 286 ~g~~dg--~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~-dg--~I~vwd~~~~~~~~~~-~~~~~ 357 (432)
+...+| .|++||+.++.. ..+..+........|+ ++.++..+. +| .|+++|+.+++..... .+...
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~ 333 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQL------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYN 333 (430)
T ss_pred EEccCCCceEEEEECCCCCe------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence 455555 588889887642 2233344344455665 777665553 33 6888888887753322 22222
Q ss_pred CcEEEEEcCCEEEEEeCC-C--cEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCe--EEEeeC
Q 014003 358 APMSLLCWDQYLLSCSLD-N--TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDS--VHLYEL 430 (432)
Q Consensus 358 ~v~~~~~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~--I~iwdl 430 (432)
....++.+++.|+..+.+ + .|.+||+.+++.. .+. ...... ...|+|||+.++++...+|. |.++++
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~----~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDE----SPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred cceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCC----CceECCCCCEEEEEEecCCceEEEEEEC
Confidence 222333347777766643 3 5888898876542 222 221112 23459999966666655554 444443
No 281
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.62 E-value=1.4e-05 Score=75.04 Aligned_cols=207 Identities=12% Similarity=0.072 Sum_probs=129.5
Q ss_pred CeEEEEeCCCCc--EEEEEEecccCcEEEEEecCCCC--EEEE-----EeCCCcEEEEeCCCCceeEEEeCCCce---ee
Q 014003 171 RFWHSWFCGEGF--TMLAKLEGHKKAVSGIALPLRSD--KLYS-----GSRDGTVQLWDCHTGQSASVINLGAEV---GS 238 (432)
Q Consensus 171 ~~i~vw~~~~~~--~~~~~l~~H~~~V~~l~~~~~~~--~l~s-----~s~Dg~v~iWd~~~~~~~~~~~~~~~~---~~ 238 (432)
..++|+++.... .+.+.++ ...|+..+|+|.++ .|+. .+.++++++|.+..+..+.+...-... ..
T Consensus 152 ~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk 229 (561)
T COG5354 152 SSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK 229 (561)
T ss_pred CeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence 348888863221 1122222 36688888888643 3443 467889999999877666554432211 12
Q ss_pred EEECCCEEEEE------------cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC----EEEEEECCCcEEEEECCCCC
Q 014003 239 LICEGPWVFVG------------MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNT 302 (432)
Q Consensus 239 ~~~~~~~l~~~------------~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~~wd~~~~~ 302 (432)
....+.++++- +...+.++++............++|..++|.|. -+++|-.+..+.++|++.+
T Consensus 230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N- 308 (561)
T COG5354 230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN- 308 (561)
T ss_pred EecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-
Confidence 22345544321 235788888886554444477899999999876 4555678889999999876
Q ss_pred CCccccceeeeccccCeEEEEEe--CCEEEEEeCC---CeEEEEECCCCceEE-EecCCCCCcEEEEEcCCEEEEEe---
Q 014003 303 QNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMD---NTIRVWDLDTLEAVM-TLNGHTDAPMSLLCWDQYLLSCS--- 373 (432)
Q Consensus 303 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d---g~I~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~l~s~s--- 373 (432)
+...+. ...=..+.|+ +++++.++-| |.|-+||......+. .+.+.+......+.+++++.+..
T Consensus 309 -----l~~~~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~ 381 (561)
T COG5354 309 -----LRFYFP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSE 381 (561)
T ss_pred -----eEEecC--CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCc
Confidence 222222 2233345554 8888887765 689999987655544 77665554444444467776664
Q ss_pred ---CCCcEEEEEcCCCC
Q 014003 374 ---LDNTIKVWIMTEEG 387 (432)
Q Consensus 374 ---~dg~i~iwd~~~~~ 387 (432)
.|..|+|||+....
T Consensus 382 k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 382 KLRVDNSIKLWDVYGAK 398 (561)
T ss_pred ccccCcceEEEEecCch
Confidence 37889999986543
No 282
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.62 E-value=1.6e-06 Score=84.31 Aligned_cols=266 Identities=11% Similarity=0.103 Sum_probs=152.4
Q ss_pred CCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCCCC
Q 014003 92 SPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECR 171 (432)
Q Consensus 92 ~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 171 (432)
...+++|+...-|+|.||.||.++|-++.+........ -++..
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~---------------------------------glaa~---- 58 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKS---------------------------------GLAAA---- 58 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCccccc---------------------------------ccccc----
Confidence 45889999999999999999999998654422100000 01111
Q ss_pred eEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEe---CCCceeeEE--ECCCEE
Q 014003 172 FWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN---LGAEVGSLI--CEGPWV 246 (432)
Q Consensus 172 ~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~---~~~~~~~~~--~~~~~l 246 (432)
....+-++|.||++.|.-+.|+.+.+.|-|+..+|.|.+|-+-.|+-...+. ...-+.++. .+|.-+
T Consensus 59 --------snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kI 130 (1189)
T KOG2041|consen 59 --------SNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKI 130 (1189)
T ss_pred --------cccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEE
Confidence 1124567899999999999999999999999999999999886654221111 111122222 233333
Q ss_pred E-EEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccce------eeecccc
Q 014003 247 F-VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAA------LLKGHTR 317 (432)
Q Consensus 247 ~-~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~------~~~~h~~ 317 (432)
+ +-.||.|.+=.++.++.+...-.......+.|++| .++.+-.+|.+.+||...+-....+... .+.....
T Consensus 131 cIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~ 210 (1189)
T KOG2041|consen 131 CIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPT 210 (1189)
T ss_pred EEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCc
Confidence 3 22445444444444443322222333457788888 6777788899999997654211111111 1111122
Q ss_pred CeEEEEEe----------CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCC---------
Q 014003 318 PVTCLAVG----------GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDN--------- 376 (432)
Q Consensus 318 ~v~~l~~~----------~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg--------- 376 (432)
.|..+.|. -..|+++-.+|.+.+..-++...-..+. ..-.+....|+ |..|+.++.|.
T Consensus 211 kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n 289 (1189)
T KOG2041|consen 211 KIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSN 289 (1189)
T ss_pred cccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccc
Confidence 34455553 3468888888988876544322211221 11345666666 67777777642
Q ss_pred cEEEEEcCCCCceeEEeeccCCcceEEE
Q 014003 377 TIKVWIMTEEGNLEVAYTHNEDHGVLAL 404 (432)
Q Consensus 377 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 404 (432)
.|.++.. -++.+..+......++.++|
T Consensus 290 ~v~Fysp-~G~i~gtlkvpg~~It~lsW 316 (1189)
T KOG2041|consen 290 KVHFYSP-YGHIVGTLKVPGSCITGLSW 316 (1189)
T ss_pred eEEEecc-chhheEEEecCCceeeeeEE
Confidence 3444432 23444455555555555555
No 283
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.60 E-value=0.00031 Score=66.72 Aligned_cols=232 Identities=17% Similarity=0.205 Sum_probs=144.0
Q ss_pred CCceEEeeccCceeeCC----CCCeEEEEeCCCC---cEEEEEEecccCcEEEEEecCCCCEEEEEeC-CCcEEEEeCCC
Q 014003 152 PKNVCYHWLSGNCVKGD----ECRFWHSWFCGEG---FTMLAKLEGHKKAVSGIALPLRSDKLYSGSR-DGTVQLWDCHT 223 (432)
Q Consensus 152 ~~~~~~~~~~~~~~~g~----~d~~i~vw~~~~~---~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~-Dg~v~iWd~~~ 223 (432)
+..+++++....+.+.. ..+.|..|.+... .+.+.........-..++++|++++|+++.. +|+|.++++..
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence 34666666666544433 4679999998643 3444444434455567999999999999875 89999999987
Q ss_pred -CceeEE---EeC-----------CCceeeE--EECCCEEEEE--cCCeEEEEEccCCc--eEe----ecCCcCCEEEEE
Q 014003 224 -GQSASV---INL-----------GAEVGSL--ICEGPWVFVG--MPNVVKAWHIESSA--EFS----LDGPVGEVYSMV 278 (432)
Q Consensus 224 -~~~~~~---~~~-----------~~~~~~~--~~~~~~l~~~--~~~~i~vwd~~~~~--~~~----~~~~~~~v~~l~ 278 (432)
+..... +.+ .....++ .++++++++. ....|.+|++.... ... .......-..+.
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~ 198 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA 198 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEE
Confidence 433322 211 1222233 3578888776 56789999997765 211 224445677899
Q ss_pred EcCC---EEEEEECCCcEEEEECCCCCCCccccceeeecc------ccCeEEEEEe--CCEEEEEe-CCCeEEEEECC--
Q 014003 279 VANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH------TRPVTCLAVG--GKRLYSGS-MDNTIRVWDLD-- 344 (432)
Q Consensus 279 ~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h------~~~v~~l~~~--~~~l~sgs-~dg~I~vwd~~-- 344 (432)
|+++ ..++.-.++.|.++++..... .++........ ......|.++ |++|+++. .++.|.+|++.
T Consensus 199 f~pdg~~~Yv~~e~s~~v~v~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 199 FSPDGKYAYVVNELSNTVSVFDYDPSDG-SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA 277 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEEETTTT-EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT
T ss_pred EcCCcCEEEEecCCCCcEEEEeecccCC-ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC
Confidence 9988 445566788899999883221 12222222211 1245567776 88887765 46789999983
Q ss_pred CCce--EEEecCCCCCcEEEEEc--CCEEEEEe-CCCcEEEEEcC
Q 014003 345 TLEA--VMTLNGHTDAPMSLLCW--DQYLLSCS-LDNTIKVWIMT 384 (432)
Q Consensus 345 ~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~s-~dg~i~iwd~~ 384 (432)
++++ +..+.........+.++ +++|+++. .++.|.+|+++
T Consensus 278 ~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 278 TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 3433 44444334446777775 78888776 56789999875
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.56 E-value=0.00012 Score=79.05 Aligned_cols=234 Identities=9% Similarity=0.077 Sum_probs=140.4
Q ss_pred CceEEeeccC-ceeeCCCCCeEEEEeCCCCcEEEEEEec--c------------cCcEEEEEecCCCCEEEEEe-CCCcE
Q 014003 153 KNVCYHWLSG-NCVKGDECRFWHSWFCGEGFTMLAKLEG--H------------KKAVSGIALPLRSDKLYSGS-RDGTV 216 (432)
Q Consensus 153 ~~~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~l~~--H------------~~~V~~l~~~~~~~~l~s~s-~Dg~v 216 (432)
..+......+ ..++....+.|+++|.... . +..+.+ . -..-..|+++++++.|+.+. ..+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-F-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-E-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 3455554433 6677778889999998654 2 222222 1 12357899998888666554 45789
Q ss_pred EEEeCCCCceeEEEeC------------------CCce-eeEEE-CCCEEEE-EcCCeEEEEEccCCceEeecCC-----
Q 014003 217 QLWDCHTGQSASVINL------------------GAEV-GSLIC-EGPWVFV-GMPNVVKAWHIESSAEFSLDGP----- 270 (432)
Q Consensus 217 ~iWd~~~~~~~~~~~~------------------~~~~-~~~~~-~~~~l~~-~~~~~i~vwd~~~~~~~~~~~~----- 270 (432)
+++|..++........ ..+. ..+.+ ++.++++ ..++.|++||..++......+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 9999887653322110 0111 12333 3333333 3678999999887765432211
Q ss_pred ----------cCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCcc--------ccceeeecc--------ccCeEE
Q 014003 271 ----------VGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPF--------QLAALLKGH--------TRPVTC 321 (432)
Q Consensus 271 ----------~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~--------~~~~~~~~h--------~~~v~~ 321 (432)
......++++++ ++++-+.++.|++||+.++..... .....+... -..-..
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 123456888876 555666779999999886531000 000000000 011246
Q ss_pred EEEe--CCEEEEEeCCCeEEEEECCCCceEEEec-C------------CCCCcEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 014003 322 LAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN-G------------HTDAPMSLLCW--DQYLLSCSLDNTIKVWIMT 384 (432)
Q Consensus 322 l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~-~------------~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~ 384 (432)
++++ |+.+++-+.+++|++||..++....... + .-.....++++ |+.+++-+.++.|++||+.
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 6665 7788888889999999998876653321 1 11134566665 7888888899999999998
Q ss_pred CCCc
Q 014003 385 EEGN 388 (432)
Q Consensus 385 ~~~~ 388 (432)
+.+.
T Consensus 889 ~~~~ 892 (1057)
T PLN02919 889 KGEA 892 (1057)
T ss_pred CCcc
Confidence 8654
No 285
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=6.5e-05 Score=73.87 Aligned_cols=204 Identities=12% Similarity=0.033 Sum_probs=114.6
Q ss_pred cEEEEeCCCCceeEEEeCCCcee--eEEECCCEEEEE-c---CCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EE-E
Q 014003 215 TVQLWDCHTGQSASVINLGAEVG--SLICEGPWVFVG-M---PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--ML-F 285 (432)
Q Consensus 215 ~v~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~-~---~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l-~ 285 (432)
.|.++|...............+. ...++++.++.. . ...|.++|+.+++...+....+......|+|+ .+ +
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~ 278 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLAL 278 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEE
Confidence 56777876554443334443433 445688776643 2 23688999988876555444444557788887 44 4
Q ss_pred EEECCCc--EEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeC-CC--eEEEEECCCCceEEE-ecCCCC
Q 014003 286 AGAQDGN--ILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM-DN--TIRVWDLDTLEAVMT-LNGHTD 357 (432)
Q Consensus 286 ~g~~dg~--i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~-dg--~I~vwd~~~~~~~~~-~~~~~~ 357 (432)
+...+|. |+++|+.+++ ...+..+.......+|+ ++.++..+. ++ .|.++|+.+++.... +.++..
T Consensus 279 ~~~~~g~~~Iy~~dl~tg~------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~ 352 (448)
T PRK04792 279 VLSKDGQPEIYVVDIATKA------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN 352 (448)
T ss_pred EEeCCCCeEEEEEECCCCC------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC
Confidence 5666775 7777887654 22333344444556665 777765543 33 577778887765432 233222
Q ss_pred CcEEEEEcCCEEEEEeC-CC--cEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCe--EEEeeC
Q 014003 358 APMSLLCWDQYLLSCSL-DN--TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDS--VHLYEL 430 (432)
Q Consensus 358 ~v~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~--I~iwdl 430 (432)
.-..++.++++|+..+. ++ .|.++|+.+++. ..+.... ... ...|+|+|+.++++...+|. +.++++
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~~-~d~----~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTSTR-LDE----SPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCCC-CCC----CceECCCCCEEEEEEecCCceEEEEEEC
Confidence 11233333677766554 44 355567766543 2222211 111 23459999966666666665 555554
No 286
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.53 E-value=5.2e-07 Score=82.06 Aligned_cols=100 Identities=13% Similarity=0.217 Sum_probs=78.6
Q ss_pred eCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCE
Q 014003 166 KGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPW 245 (432)
Q Consensus 166 ~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (432)
..+.+..+.+|+...+ . ...+-||-+.+++++|+||+++++|+..|..|++-....--.+..+
T Consensus 127 kagD~~~~di~s~~~~-~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf--------------- 189 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSG-R-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF--------------- 189 (390)
T ss_pred ecCCceeeeeeccccc-C-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh---------------
Confidence 3455556777776542 2 3345699999999999999999999999999999776544333322
Q ss_pred EEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCC
Q 014003 246 VFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQ 303 (432)
Q Consensus 246 l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~ 303 (432)
..+|..-|..++..++ .|++|+.|++|++||+.+++.
T Consensus 190 ---------------------clGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 190 ---------------------CLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred ---------------------ccccHhheeeeeeccCceeeecCCCCcEEEEecccCCc
Confidence 2578899999999988 789999999999999999875
No 287
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=1.5e-05 Score=78.92 Aligned_cols=180 Identities=14% Similarity=0.140 Sum_probs=129.7
Q ss_pred ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC
Q 014003 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~ 233 (432)
..|.......++.|..+|.|++.+.+... .+...|... ..+|.+++|||.||+|.|-.+-+.+...++..
T Consensus 42 is~~av~~~~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df- 111 (846)
T KOG2066|consen 42 ISCCAVHDKFFALGTHRGAVYLTTCQGNP---KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF- 111 (846)
T ss_pred HHHHHhhcceeeeccccceEEEEecCCcc---ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec-
Confidence 45666667788999999999999987652 333455554 57899999999999999988887776655442
Q ss_pred CceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC-------EEEEEECCCcEEEEECCCCCCCcc
Q 014003 234 AEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-------MLFAGAQDGNILVWKGIPNTQNPF 306 (432)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~-------~l~~g~~dg~i~~wd~~~~~~~~~ 306 (432)
..++.+++++|+ .+++|+..| +.++.-+--..
T Consensus 112 -------------------------------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn--- 150 (846)
T KOG2066|consen 112 -------------------------------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN--- 150 (846)
T ss_pred -------------------------------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC---
Confidence 345667777776 788999988 77775332111
Q ss_pred ccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCc------EEEEEcCCEEEEEeCCCcEEE
Q 014003 307 QLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAP------MSLLCWDQYLLSCSLDNTIKV 380 (432)
Q Consensus 307 ~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v------~~~~~~~~~l~s~s~dg~i~i 380 (432)
+....+....++|.++.|.|+++|=++.+| |+|||+.+++.+..++.....+ ..+.|.+..-+.-+...+|+|
T Consensus 151 k~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i 229 (846)
T KOG2066|consen 151 KDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKI 229 (846)
T ss_pred ccceeeecCccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEE
Confidence 111245566789999999999999999888 9999999998888776544332 344455444444556668999
Q ss_pred EEcCC
Q 014003 381 WIMTE 385 (432)
Q Consensus 381 wd~~~ 385 (432)
..++.
T Consensus 230 ~~I~~ 234 (846)
T KOG2066|consen 230 CSIKK 234 (846)
T ss_pred EEEec
Confidence 98873
No 288
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.52 E-value=0.00011 Score=73.04 Aligned_cols=257 Identities=14% Similarity=0.151 Sum_probs=150.4
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEecccC------cEE--EEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKK------AVS--GIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~------~V~--~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 232 (432)
...+..++.++.+...|..++ +.+..++.... .+. .++.. ++..++.++.|+.|..+|.++|+.+-.+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATG-KVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCC-hhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 445666777889999999887 44544433222 111 11111 226788889999999999999999988876
Q ss_pred CCce------e-e-EEECCCEEEEE---------cCCeEEEEEccCCceEeecCC--c-------------------CCE
Q 014003 233 GAEV------G-S-LICEGPWVFVG---------MPNVVKAWHIESSAEFSLDGP--V-------------------GEV 274 (432)
Q Consensus 233 ~~~~------~-~-~~~~~~~l~~~---------~~~~i~vwd~~~~~~~~~~~~--~-------------------~~v 274 (432)
.... . . ...++.+++.+ .++.+..+|.++++..-.... . ..+
T Consensus 139 ~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v 218 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS 218 (488)
T ss_pred CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence 5541 1 1 22233333332 257889999998886522111 0 111
Q ss_pred -EEEEEc--CCEEEEEECCC------------------cEEEEECCCCCCCccccceeeecc--------ccCe-EEEE-
Q 014003 275 -YSMVVA--NEMLFAGAQDG------------------NILVWKGIPNTQNPFQLAALLKGH--------TRPV-TCLA- 323 (432)
Q Consensus 275 -~~l~~~--~~~l~~g~~dg------------------~i~~wd~~~~~~~~~~~~~~~~~h--------~~~v-~~l~- 323 (432)
.+..++ .+.+++++.++ .|.-+|..+++.. ++ .....| ..++ ..+.
T Consensus 219 w~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~-W~--~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 219 WASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK-WF--YQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred cCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE-EE--eeCCCCCCcccccCCCCeEEeccc
Confidence 123333 34777887665 7999999888642 11 111111 1111 1111
Q ss_pred EeCC---EEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEE------------------eCCCcEEEEE
Q 014003 324 VGGK---RLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSC------------------SLDNTIKVWI 382 (432)
Q Consensus 324 ~~~~---~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~------------------s~dg~i~iwd 382 (432)
.++. .++.++.+|.+...|.++|+.+........ .+...++.++.+ ..+|.+.-.|
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~---~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ---PMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc---ccccCCceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 3333 688899999999999999999887652211 111222333332 2467888888
Q ss_pred cCCCCceeEEeeccC--------Cc--ceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 383 MTEEGNLEVAYTHNE--------DH--GVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 383 ~~~~~~~~~~~~~~~--------~~--~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+.+++.+........ .. ..+.. .+. +++.++.||.|+.+|..|
T Consensus 373 ~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~------~g~-~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 373 PKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT------AGN-LVFAGAADGYFRAFDATT 425 (488)
T ss_pred CCCCcEeeEeeCCccccccccCCcccCcceEe------cCC-eEEEECCCCeEEEEECCC
Confidence 888876665543210 10 11111 344 688888999999998764
No 289
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.51 E-value=0.00024 Score=66.54 Aligned_cols=130 Identities=12% Similarity=0.090 Sum_probs=98.2
Q ss_pred CCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCC-cEEEEeCCCCceeEEEeCCCceeeEE--ECCCEE
Q 014003 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDG-TVQLWDCHTGQSASVINLGAEVGSLI--CEGPWV 246 (432)
Q Consensus 170 d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg-~v~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~l 246 (432)
.|...+.+...+. .+ --+|...|.-..+..+++-++.|..|| .+-|+|.++++..+....-..+.++. .+++.+
T Consensus 340 RGkaFi~~~~~~~-~i--qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~ 416 (668)
T COG4946 340 RGKAFIMRPWDGY-SI--QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKV 416 (668)
T ss_pred cCcEEEECCCCCe-eE--EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEE
Confidence 3455555554441 12 236888899888888888999999999 89999999998877777666666554 688877
Q ss_pred EEEc-CCeEEEEEccCCceEee-cCCcCCEEEEEEcCC--EEEEEECCC----cEEEEECCCCC
Q 014003 247 FVGM-PNVVKAWHIESSAEFSL-DGPVGEVYSMVVANE--MLFAGAQDG----NILVWKGIPNT 302 (432)
Q Consensus 247 ~~~~-~~~i~vwd~~~~~~~~~-~~~~~~v~~l~~~~~--~l~~g~~dg----~i~~wd~~~~~ 302 (432)
++++ ...+.+.|++++..... ....+.|+.+.|+++ ++|-+--+| .|+++|+..++
T Consensus 417 vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 417 VVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred EEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 7775 46899999999986544 455678999999999 677666555 68999998864
No 290
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.50 E-value=6.8e-05 Score=73.20 Aligned_cols=214 Identities=14% Similarity=0.068 Sum_probs=112.4
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCE---EEEEeCCC--cEEEEeCCCCceeEEEeCCCceeeEEECCCE
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDK---LYSGSRDG--TVQLWDCHTGQSASVINLGAEVGSLICEGPW 245 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~---l~s~s~Dg--~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (432)
+.|.+.|.+.. . ...+......+.+=+|+|||+. +++...+| .|.+.++.+++.....
T Consensus 165 ~~l~~~d~dG~-~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt--------------- 227 (428)
T PRK01029 165 GELWSVDYDGQ-N-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL--------------- 227 (428)
T ss_pred ceEEEEcCCCC-C-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee---------------
Confidence 35666676544 2 2334445566777899999975 23444443 4556666665433322
Q ss_pred EEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEE-CCC----cEEEEECCCCCCCccccceeeeccccC
Q 014003 246 VFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA-QDG----NILVWKGIPNTQNPFQLAALLKGHTRP 318 (432)
Q Consensus 246 l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~-~dg----~i~~wd~~~~~~~~~~~~~~~~~h~~~ 318 (432)
...+......|+|| .|+..+ .+| .+..|++..+... ........+...
T Consensus 228 -----------------------~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g--~~~~lt~~~~~~ 282 (428)
T PRK01029 228 -----------------------ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG--KPRRLLNEAFGT 282 (428)
T ss_pred -----------------------cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC--cceEeecCCCCC
Confidence 22223344567766 444333 222 3344666543210 112222222222
Q ss_pred eEEEEEe--CCEEEEEe-CCCeEEEE--ECCC-CceEEEecCCCCCcEEEEEc--CCEEEEEeCC---CcEEEEEcCCCC
Q 014003 319 VTCLAVG--GKRLYSGS-MDNTIRVW--DLDT-LEAVMTLNGHTDAPMSLLCW--DQYLLSCSLD---NTIKVWIMTEEG 387 (432)
Q Consensus 319 v~~l~~~--~~~l~sgs-~dg~I~vw--d~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d---g~i~iwd~~~~~ 387 (432)
....+|+ |+.|+..+ .+|...+| ++.. +.....+..+...+....|+ |+.|+..+.+ ..|.+||+.+++
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~ 362 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR 362 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 3445665 77776655 46654444 5432 23344454444455566666 7777766543 469999998776
Q ss_pred ceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeC--CCeEEEeeCC
Q 014003 388 NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCN--DDSVHLYELP 431 (432)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~--Dg~I~iwdl~ 431 (432)
.... .......... .|+|||+.+++++.. ...|.++|+.
T Consensus 363 ~~~L-t~~~~~~~~p----~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 363 DYQL-TTSPENKESP----SWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred eEEc-cCCCCCccce----EECCCCCEEEEEECCCCCceEEEEECC
Confidence 5433 2222222333 458999956555543 3457777764
No 291
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.49 E-value=7e-07 Score=76.71 Aligned_cols=198 Identities=19% Similarity=0.312 Sum_probs=115.5
Q ss_pred CCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeC
Q 014003 88 NHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKG 167 (432)
Q Consensus 88 gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 167 (432)
-|+++-+.-+++-.+..++++..||.+-+.+.+. .... ....-..+.+.. ..|.-. ...++..
T Consensus 87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~-~~~~-~~~i~~~~~~~a--------------s~~~~~-~~~~i~s 149 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDK-DLAL-MSRIPSIHSGSA--------------SRKICR-HGNSILS 149 (319)
T ss_pred ccCCCCCcccccccCCceEecCCCceEEEEechH-HHhh-hhhccccccccc--------------ccceee-cccEEec
Confidence 3444445667888888999999999999886554 1100 000000001110 111111 1223333
Q ss_pred CCCCeE------EEEeCCCCcEEEEEEec---ccCcEEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeEEEeCCCcee
Q 014003 168 DECRFW------HSWFCGEGFTMLAKLEG---HKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG 237 (432)
Q Consensus 168 ~~d~~i------~vw~~~~~~~~~~~l~~---H~~~V~~l~~~~~-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~ 237 (432)
...|.+ ++|+++ ++.++.. --+.|++++-+|. .+.+++|+.||.+.+||.+.......
T Consensus 150 ~~~g~~n~~d~~~a~~~~----p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S-------- 217 (319)
T KOG4714|consen 150 GGCGNWNAQDNFYANTLD----PIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS-------- 217 (319)
T ss_pred CCcceEeeccceeeeccc----ccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH--------
Confidence 333433 344443 2332221 1244999998885 45677888999999999986632211
Q ss_pred eEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCC----C------
Q 014003 238 SLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQ----N------ 304 (432)
Q Consensus 238 ~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~----~------ 304 (432)
.+..|..++..+.|+|. .|+++++||.+..||..+.-. +
T Consensus 218 ----------------------------~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~ 269 (319)
T KOG4714|consen 218 ----------------------------LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISS 269 (319)
T ss_pred ----------------------------HHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccc
Confidence 23567788888888876 889999999999998764210 0
Q ss_pred ---------ccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEE
Q 014003 305 ---------PFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWD 342 (432)
Q Consensus 305 ---------~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd 342 (432)
..++...+..-...|.++...|..|++|+.-+.|++++
T Consensus 270 WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 270 WLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 00111112223344555555699999999999998875
No 292
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=7.6e-05 Score=72.86 Aligned_cols=110 Identities=19% Similarity=0.151 Sum_probs=62.7
Q ss_pred EEEEEcCC--EEEEEE-CCCcEEEE--ECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCC---CeEEEEECC
Q 014003 275 YSMVVANE--MLFAGA-QDGNILVW--KGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMD---NTIRVWDLD 344 (432)
Q Consensus 275 ~~l~~~~~--~l~~g~-~dg~i~~w--d~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d---g~I~vwd~~ 344 (432)
....|+|+ .|+..+ .+|...+| ++..... ....+..+...+....|+ |+.|+..+.+ ..|.+||+.
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~----~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~ 359 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ----SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLA 359 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECccccc----ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 45677877 455444 56655555 4432211 122233333455566675 8877766543 479999999
Q ss_pred CCceEEEecCCCCCcEEEEEc--CCEEEEEeC---CCcEEEEEcCCCCce
Q 014003 345 TLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL---DNTIKVWIMTEEGNL 389 (432)
Q Consensus 345 ~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~---dg~i~iwd~~~~~~~ 389 (432)
+++... +......+....|+ ++.|+..+. ...|.++|+..++..
T Consensus 360 ~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 360 TGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred CCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 887644 33233344556666 566664432 356888888776543
No 293
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=0.00012 Score=72.31 Aligned_cols=325 Identities=12% Similarity=0.119 Sum_probs=191.8
Q ss_pred CCCCCCCCCCCCCCCC------------CceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCC
Q 014003 85 PVSNHKKSPPSYNCPK------------NNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP 152 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~------------~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (432)
.++=|+..|++++|.| ..-.||++.-.|.|.|||........--. ...+ ..
T Consensus 50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~------~~~~-----------~~ 112 (1062)
T KOG1912|consen 50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLS------HSND-----------SV 112 (1062)
T ss_pred ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhc------CCCc-----------ch
Confidence 4455777788888743 22357888889999999866543211000 0000 01
Q ss_pred CceEEeeccC----ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCC----
Q 014003 153 KNVCYHWLSG----NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHT---- 223 (432)
Q Consensus 153 ~~~~~~~~~~----~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~---- 223 (432)
..+|..|... .+++-....++-+|+..+| +....+..-.....|+.+.| |.+.+..-+..|.|-+-+.-.
T Consensus 113 qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG-~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep 191 (1062)
T KOG1912|consen 113 QDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG-EKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEP 191 (1062)
T ss_pred hheeeeeccCcchheeEEecCCcEEEEEEccCC-ceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCC
Confidence 3455554432 3455555578999999998 55666665556777799887 556666666667776665421
Q ss_pred CceeEEEeCCCceee-------------E------------------E-ECCCEEEEEcCCeEEEEEccCCceE---eec
Q 014003 224 GQSASVINLGAEVGS-------------L------------------I-CEGPWVFVGMPNVVKAWHIESSAEF---SLD 268 (432)
Q Consensus 224 ~~~~~~~~~~~~~~~-------------~------------------~-~~~~~l~~~~~~~i~vwd~~~~~~~---~~~ 268 (432)
....+.++...+... . . ...+.++......+.++|++-...+ .++
T Consensus 192 ~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie 271 (1062)
T KOG1912|consen 192 DVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE 271 (1062)
T ss_pred CCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec
Confidence 111222221111000 0 0 1344667777888888888766543 222
Q ss_pred CCcCCEEEEEEcCC--EEEEEECCCcEEEEECCC----------------------------------------------
Q 014003 269 GPVGEVYSMVVANE--MLFAGAQDGNILVWKGIP---------------------------------------------- 300 (432)
Q Consensus 269 ~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~---------------------------------------------- 300 (432)
.....+..+-..+. .+++...||.+.+|-.+.
T Consensus 272 r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~av 351 (1062)
T KOG1912|consen 272 RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAV 351 (1062)
T ss_pred cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhh
Confidence 22233444433333 677777777777774332
Q ss_pred --------------CCCCc------ccc--------------------ceeeeccccCeEEEEEe---------------
Q 014003 301 --------------NTQNP------FQL--------------------AALLKGHTRPVTCLAVG--------------- 325 (432)
Q Consensus 301 --------------~~~~~------~~~--------------------~~~~~~h~~~v~~l~~~--------------- 325 (432)
+.... .+. +....+|....++...+
T Consensus 352 l~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n 431 (1062)
T KOG1912|consen 352 LYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGN 431 (1062)
T ss_pred hhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCC
Confidence 10000 000 00011233333332210
Q ss_pred -----CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcC-CEEEEEeC----------CCcEEEEEcCCCCce
Q 014003 326 -----GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD-QYLLSCSL----------DNTIKVWIMTEEGNL 389 (432)
Q Consensus 326 -----~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~s~----------dg~i~iwd~~~~~~~ 389 (432)
-..+|.|+..|+|.|+|+.++..-..+..|...|.++.|-| ..|++.+. -+.+.+-|++++...
T Consensus 432 ~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk 511 (1062)
T KOG1912|consen 432 TPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK 511 (1062)
T ss_pred ccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccc
Confidence 12588999999999999999999999999999999999985 34554443 245778889887654
Q ss_pred eEE--e-eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 390 EVA--Y-THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 390 ~~~--~-~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
... . ....++..+.. |.-|+ +|+..-.|.-+.+||+++
T Consensus 512 ~fR~l~~~despI~~irv----S~~~~-yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 512 RFRGLQKPDESPIRAIRV----SSSGR-YLAILFRREPLEIWDLKT 552 (1062)
T ss_pred ccccCCCCCcCcceeeee----cccCc-eEEEEecccchHHHhhcc
Confidence 322 1 23345666666 66788 888888999999999853
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.45 E-value=8.6e-06 Score=71.88 Aligned_cols=235 Identities=14% Similarity=0.177 Sum_probs=146.0
Q ss_pred ccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-ee----EEEeC-------------CCceeeEEE-----CCCEEE
Q 014003 191 HKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ-SA----SVINL-------------GAEVGSLIC-----EGPWVF 247 (432)
Q Consensus 191 H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~-~~----~~~~~-------------~~~~~~~~~-----~~~~l~ 247 (432)
..+.|+++.|...|.||++|...|.|.++.-+... |. ..++. .+.+..+.. ...++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35779999999999999999999999999865433 11 11221 122222221 345888
Q ss_pred EEcCCeEEEEEccCCceE--------------------------------------------eecCCcCCEEEEEEcCC-
Q 014003 248 VGMPNVVKAWHIESSAEF--------------------------------------------SLDGPVGEVYSMVVANE- 282 (432)
Q Consensus 248 ~~~~~~i~vwd~~~~~~~--------------------------------------------~~~~~~~~v~~l~~~~~- 282 (432)
++.|.+|++|.+...... -...|.-.+.++.++.+
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 999999999987543100 01345556778888887
Q ss_pred EEEEEECCCcEEEEECCCCCCCccccceeeeccc-----cCeEEEEEe---CCEEEEEeCCCeEEEEECCCCce------
Q 014003 283 MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT-----RPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEA------ 348 (432)
Q Consensus 283 ~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~-----~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~------ 348 (432)
..+..+.|=.|.+|++...... +. +..++.|. .-|++..|+ .+.+.-.+..|.|++-|++...+
T Consensus 185 et~lSaDdLrINLWnl~i~D~s-Fn-IVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSADDLRINLWNLEIIDGS-FN-IVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeeccceeeeeccccccCCc-eE-EEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 5556677889999988754331 11 22233332 346677776 56677778899999999984322
Q ss_pred EE--E--------ecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc-eeEEeeccCC-----------cceEEE
Q 014003 349 VM--T--------LNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN-LEVAYTHNED-----------HGVLAL 404 (432)
Q Consensus 349 ~~--~--------~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~-----------~~~~~~ 404 (432)
+. + +.+-...|..+.|+ |+++++-+ --+++|||++..+. +..+..|... .-.-.|
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 11 1 11122346666777 56777654 46899999987653 4444333211 111234
Q ss_pred eeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 405 GGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 405 ~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
.+.+|.|.+ .+++|+..+..-+|-
T Consensus 342 eisfSgd~~-~v~sgsy~NNfgiyp 365 (460)
T COG5170 342 EISFSGDDK-HVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEecCCcc-cccccccccceeeec
Confidence 455677777 778888777766664
No 295
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=5.9e-05 Score=74.44 Aligned_cols=214 Identities=12% Similarity=0.111 Sum_probs=138.5
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCC------------CEEEEEeCCCcEEEEeCCCCceeEEEeCCCceee
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRS------------DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS 238 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~------------~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~ 238 (432)
..|.+-|..+- +.++.+.-|...|+.+.|.|-. -+||++...|.|.+||...+..+..+
T Consensus 35 slV~VVDs~s~-q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l-------- 105 (1062)
T KOG1912|consen 35 SLVSVVDSRSL-QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL-------- 105 (1062)
T ss_pred ceEEEEehhhh-hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh--------
Confidence 34555565444 7788899999999999997632 24677777889999998777655444
Q ss_pred EEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcC------CEEEEEECCCcEEEEECCCCCCCccccceee
Q 014003 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN------EMLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (432)
Q Consensus 239 ~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~------~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~ 312 (432)
..+..++..++|-+ +.+++-....++.+|+..+++. ....
T Consensus 106 -----------------------------~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k-----~Wk~ 151 (1062)
T KOG1912|consen 106 -----------------------------SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK-----FWKY 151 (1062)
T ss_pred -----------------------------cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce-----eecc
Confidence 34445555666543 2777788888999999998863 3444
Q ss_pred eccccCeEEEEEe---CCEEEEEeCCCeEEEEECCC-------CceEEEecCCCC----------------C--------
Q 014003 313 KGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDT-------LEAVMTLNGHTD----------------A-------- 358 (432)
Q Consensus 313 ~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~-------~~~~~~~~~~~~----------------~-------- 358 (432)
........|+.++ .+.+..-+..|.+.+-+.-. ++..+.-..|.. .
T Consensus 152 ~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fit 231 (1062)
T KOG1912|consen 152 DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFIT 231 (1062)
T ss_pred ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHH
Confidence 4444556677775 66777777778777776532 233333233322 0
Q ss_pred -cEEEEEcC--CEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 359 -PMSLLCWD--QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 359 -v~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
...++|+. +.++-......+.++|++-..++............+.+. ..|... .|+|.-.||.+.+|--
T Consensus 232 y~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl--P~~~rd-~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 232 YCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL--PDPRRD-ALFCLHSNGRLTIRVR 303 (1062)
T ss_pred HHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec--cCCCcc-eEEEEecCCeEEEEEe
Confidence 01122221 234444456789999999888887776666555555553 234444 8999999999999853
No 296
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.41 E-value=0.00023 Score=66.64 Aligned_cols=201 Identities=13% Similarity=0.158 Sum_probs=137.9
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCc------e----------eeEE-ECCCEEEEEcCCeEEEEEccCCce
Q 014003 202 LRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE------V----------GSLI-CEGPWVFVGMPNVVKAWHIESSAE 264 (432)
Q Consensus 202 ~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~------~----------~~~~-~~~~~l~~~~~~~i~vwd~~~~~~ 264 (432)
.||+.++- +.-|.|.++|.++....+ +..+-+ . ...+ .+|.+++.-+.|...+.+.-.+-.
T Consensus 276 sDGkrIvF-q~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~ 353 (668)
T COG4946 276 SDGKRIVF-QNAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYS 353 (668)
T ss_pred CCCcEEEE-ecCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCee
Confidence 45655543 345779999988765332 221100 0 0111 377888888888888887776665
Q ss_pred EeecCCcCCEEEEEEc--CCEEEEEECCC-cEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEE
Q 014003 265 FSLDGPVGEVYSMVVA--NEMLFAGAQDG-NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIR 339 (432)
Q Consensus 265 ~~~~~~~~~v~~l~~~--~~~l~~g~~dg-~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~ 339 (432)
+.... .+.|.-..+. ++-++.|..|| .+-+||..++. +..+...-+.|.++..+ |++++++-....|-
T Consensus 354 iqv~~-~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e------~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 354 IQVGK-KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE------VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred EEcCC-CCceEEEEEccCCcceEEeccCCceEEEEecCCce------EEEeeCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence 55443 4446555444 44888999999 89999999874 44555666778888876 88999999999999
Q ss_pred EEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCC----cEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCC
Q 014003 340 VWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDN----TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGN 413 (432)
Q Consensus 340 vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~ 413 (432)
+.|++++.....-+...+-|+.+.++ ++++|-+--+| .|+++|+..++...... . ++..++.+|+||++
T Consensus 427 vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~----ta~DfsPaFD~d~r 501 (668)
T COG4946 427 VIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-P----TAYDFSPAFDPDGR 501 (668)
T ss_pred EEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-C----cccccCcccCCCCc
Confidence 99999998866666667778999988 56777665554 69999998876544332 2 33346666699998
Q ss_pred cEE
Q 014003 414 PVL 416 (432)
Q Consensus 414 ~~l 416 (432)
++.
T Consensus 502 yLY 504 (668)
T COG4946 502 YLY 504 (668)
T ss_pred EEE
Confidence 443
No 297
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=1.3e-05 Score=78.10 Aligned_cols=260 Identities=13% Similarity=0.130 Sum_probs=156.1
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceee----eecCCC
Q 014003 78 HTESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTL----ERTTPK 153 (432)
Q Consensus 78 ~~~~~~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 153 (432)
......++++||+.+|.-+.|+.+.+.|-|+..+|.|.||-+=.++-..... ...++.+. =...+.
T Consensus 59 snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi----------NnRnKSvV~SmsWn~dG~ 128 (1189)
T KOG2041|consen 59 SNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI----------NNRNKSVVVSMSWNLDGT 128 (1189)
T ss_pred cccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh----------hCcCccEEEEEEEcCCCc
Confidence 3445667999999999999999999999999999999999665544211110 01111111 123345
Q ss_pred ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC-------ce
Q 014003 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-------QS 226 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~-------~~ 226 (432)
.+|..+-.+.++.|+-||. |||.-+ |++. -...+.|++|.+.++.+-..|.+.++|.+.. ++
T Consensus 129 kIcIvYeDGavIVGsvdGN-RIwgKe--------Lkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c 197 (1189)
T KOG2041|consen 129 KICIVYEDGAVIVGSVDGN-RIWGKE--------LKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDC 197 (1189)
T ss_pred EEEEEEccCCEEEEeeccc-eecchh--------cchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhce
Confidence 7777777777777777764 566532 2211 1225789999999888888999999997642 11
Q ss_pred eEEEe-----CC----------CceeeEEECCCEEEEE-cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEE
Q 014003 227 ASVIN-----LG----------AEVGSLICEGPWVFVG-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA 288 (432)
Q Consensus 227 ~~~~~-----~~----------~~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~ 288 (432)
.-... .+ ++...+.++.+.++++ ..|.+.+..-++..........-.+....|+++ .+++++
T Consensus 198 ~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 198 EVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred EEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEcc
Confidence 11100 00 1111222355566655 567777665544433333333366778888888 677666
Q ss_pred CCC---------cEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCC--------CceE
Q 014003 289 QDG---------NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDT--------LEAV 349 (432)
Q Consensus 289 ~dg---------~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~--------~~~~ 349 (432)
.+. .|.+|..-. +.+..++.....|+.++|. |-.++. ..|+.|++=+++. ...+
T Consensus 278 ~~~da~~~~d~n~v~Fysp~G------~i~gtlkvpg~~It~lsWEg~gLriA~-AvdsfiyfanIRP~ykWgy~e~TvV 350 (1189)
T KOG2041|consen 278 NDSDADEPTDSNKVHFYSPYG------HIVGTLKVPGSCITGLSWEGTGLRIAI-AVDSFIYFANIRPEYKWGYIEETVV 350 (1189)
T ss_pred CcccccCccccceEEEeccch------hheEEEecCCceeeeeEEcCCceEEEE-EecceEEEEeecccceEEEeeeEEE
Confidence 442 455554332 3566777778889999997 333333 3567777666653 2234
Q ss_pred EEecCCCCCcEEEEEc
Q 014003 350 MTLNGHTDAPMSLLCW 365 (432)
Q Consensus 350 ~~~~~~~~~v~~~~~~ 365 (432)
........+-.++.|+
T Consensus 351 y~y~~~e~p~y~i~Fw 366 (1189)
T KOG2041|consen 351 YVYQKEELPQYGIMFW 366 (1189)
T ss_pred EEEccCCCcceEEEEE
Confidence 4444444444555544
No 298
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.37 E-value=0.0018 Score=64.49 Aligned_cols=222 Identities=13% Similarity=0.044 Sum_probs=136.0
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEecccCc-----EE-EEEecCCCCEEEEEe---------CCCcEEEEeCCCCce
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKA-----VS-GIALPLRSDKLYSGS---------RDGTVQLWDCHTGQS 226 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~-----V~-~l~~~~~~~~l~s~s---------~Dg~v~iWd~~~~~~ 226 (432)
+.++.+..++.|..+|.+++ +.+..+...... +. +..+ .+..++.++ .+|.+...|.++|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG-~~~W~~~~~~~~~~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETG-KQVWKFGNNDQVPPGYTMTGAPTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCC-CEeeeecCCCCcCcceEecCCCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 67777888999999999988 555555432211 11 1112 124555554 368899999999998
Q ss_pred eEEEeCCCce------------------------eeEEECCCEEEEE-cCC------------------eEEEEEccCCc
Q 014003 227 ASVINLGAEV------------------------GSLICEGPWVFVG-MPN------------------VVKAWHIESSA 263 (432)
Q Consensus 227 ~~~~~~~~~~------------------------~~~~~~~~~l~~~-~~~------------------~i~vwd~~~~~ 263 (432)
+-.++..... ..+...+..++++ .++ .+..+|.++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 8877653210 0111134445444 333 68899999998
Q ss_pred eEeecC---Cc--------CC-EEEEE-EcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCC
Q 014003 264 EFSLDG---PV--------GE-VYSMV-VANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGK 327 (432)
Q Consensus 264 ~~~~~~---~~--------~~-v~~l~-~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 327 (432)
..-... +. .+ +..+. .+.. .+++++.+|.+..+|..+++. +-..... ...++.+.+
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~-----~W~~~~~---~~~~~~~~~ 339 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL-----ISARPEV---EQPMAYDPG 339 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE-----eeEeEee---ccccccCCc
Confidence 653221 11 01 11111 2222 578888999999999999864 2221110 011222223
Q ss_pred EEEEE------------------eCCCeEEEEECCCCceEEEecCCC--------CC--cEEEEEcCCEEEEEeCCCcEE
Q 014003 328 RLYSG------------------SMDNTIRVWDLDTLEAVMTLNGHT--------DA--PMSLLCWDQYLLSCSLDNTIK 379 (432)
Q Consensus 328 ~l~sg------------------s~dg~I~vwd~~~~~~~~~~~~~~--------~~--v~~~~~~~~~l~s~s~dg~i~ 379 (432)
.++.+ ..+|.+.-.|+.+|+.+.+..... .. ...+...++.++.++.||.++
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ 419 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFR 419 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEE
Confidence 33332 246889999999999988876431 11 123445688999999999999
Q ss_pred EEEcCCCCceeEEee
Q 014003 380 VWIMTEEGNLEVAYT 394 (432)
Q Consensus 380 iwd~~~~~~~~~~~~ 394 (432)
.+|.++++.+.....
T Consensus 420 ald~~tG~~lW~~~~ 434 (488)
T cd00216 420 AFDATTGKELWKFRT 434 (488)
T ss_pred EEECCCCceeeEEEC
Confidence 999999988877654
No 299
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=9.4e-05 Score=70.36 Aligned_cols=230 Identities=10% Similarity=0.067 Sum_probs=127.4
Q ss_pred CcEEEEEecCCCCEEEEEeC-----------CCcEEEEeCCCCceeEEEeCC--C----ceeeEEECCCEEEEEcCCeEE
Q 014003 193 KAVSGIALPLRSDKLYSGSR-----------DGTVQLWDCHTGQSASVINLG--A----EVGSLICEGPWVFVGMPNVVK 255 (432)
Q Consensus 193 ~~V~~l~~~~~~~~l~s~s~-----------Dg~v~iWd~~~~~~~~~~~~~--~----~~~~~~~~~~~l~~~~~~~i~ 255 (432)
..|.-+.|||+.+||+|=|. ...++|||+.+|...+.+... . ++...+.++++++.-..+.|.
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sis 329 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSIS 329 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEE
Confidence 34778899999999998654 257999999999999888862 1 122334588888887779999
Q ss_pred EEEccCCceEeec-CCcCCEEEEEEcCC--EEEEEEC-----CCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--
Q 014003 256 AWHIESSAEFSLD-GPVGEVYSMVVANE--MLFAGAQ-----DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-- 325 (432)
Q Consensus 256 vwd~~~~~~~~~~-~~~~~v~~l~~~~~--~l~~g~~-----dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-- 325 (432)
+++......+... -....|..+.|+|. +||-=+. -..+.+..+.+.. .++...-+.-.=..|.|.
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~-----~iRt~nlfnVsDckLhWQk~ 404 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR-----EIRTKNLFNVSDCKLHWQKS 404 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccc-----eeeeccceeeeccEEEeccC
Confidence 9987765444222 23345677788887 3222111 1123333333322 122222222111234442
Q ss_pred CCEEEEEe----------CCCeEEEEECCCCce-EEEecCCCCCcEEEEEc--CCEEEEEeC---CCcEEEEEcCC-CCc
Q 014003 326 GKRLYSGS----------MDNTIRVWDLDTLEA-VMTLNGHTDAPMSLLCW--DQYLLSCSL---DNTIKVWIMTE-EGN 388 (432)
Q Consensus 326 ~~~l~sgs----------~dg~I~vwd~~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~s~---dg~i~iwd~~~-~~~ 388 (432)
|.+|+.-- .-..+-|+.++.... +... .-...+...+|. |+.+++-+. ..++.+|.+++ ...
T Consensus 405 gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~ 483 (698)
T KOG2314|consen 405 GDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK 483 (698)
T ss_pred CcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc
Confidence 66665432 122344555544332 2222 234567777776 555544432 35788898874 222
Q ss_pred eeEEeeccCCcceEEEeeeeCCCCCcEEEEE--eCCCeEEEeeCC
Q 014003 389 LEVAYTHNEDHGVLALGGLNDPDGNPVLICS--CNDDSVHLYELP 431 (432)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg--~~Dg~I~iwdl~ 431 (432)
...+..... ..+-...|+|.|+.+++.+ |..|.+.++|+.
T Consensus 484 ~~lVk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 484 PSLVKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred hhhhhhhcc---cccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 222221111 1122334599999444433 457889999874
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.32 E-value=0.0022 Score=57.71 Aligned_cols=211 Identities=18% Similarity=0.193 Sum_probs=129.3
Q ss_pred EEEecC-CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE-CCCEEEEEcCCeEEEEEccCCceEeec-----C
Q 014003 197 GIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC-EGPWVFVGMPNVVKAWHIESSAEFSLD-----G 269 (432)
Q Consensus 197 ~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~i~vwd~~~~~~~~~~-----~ 269 (432)
+.+|.+ ++.++++--..+.|..|+..+++.. .+....+...... .+..++++..+.+.++|+.+++...+. .
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~ 82 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPGPNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGG 82 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSSEEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTC
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCCCceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCC
Confidence 567887 6777777777899999999876554 3555555555554 445555555566666699888644221 1
Q ss_pred -CcCCEEEEEEcCC-EEEEE-ECC--------CcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEE-EEeCC
Q 014003 270 -PVGEVYSMVVANE-MLFAG-AQD--------GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLY-SGSMD 335 (432)
Q Consensus 270 -~~~~v~~l~~~~~-~l~~g-~~d--------g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-sgs~d 335 (432)
.....+.++++++ .+..+ ... |.|..++.. ++ .......-.....|+|+ ++.|+ +-+..
T Consensus 83 ~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 83 VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK------VTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE------EEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce------EEEEecCcccccceEECCcchheeeccccc
Confidence 4456788999988 44443 322 557777766 32 22222223445678887 76665 56678
Q ss_pred CeEEEEECCCCc-------eEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEee
Q 014003 336 NTIRVWDLDTLE-------AVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGG 406 (432)
Q Consensus 336 g~I~vwd~~~~~-------~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 406 (432)
+.|..+++.... ....+....+..-.++++ |++.++.-..+.|.++|.+ ++.+..+.......+.++|.
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg- 233 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG- 233 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE-
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE-
Confidence 899999986322 122233333335667766 6777777789999999987 66666665554455555553
Q ss_pred eeCCCCCcEEEEE
Q 014003 407 LNDPDGNPVLICS 419 (432)
Q Consensus 407 ~~sp~g~~~l~sg 419 (432)
.|+.+.++++.
T Consensus 234 --g~~~~~L~vTt 244 (246)
T PF08450_consen 234 --GPDGKTLYVTT 244 (246)
T ss_dssp --STTSSEEEEEE
T ss_pred --CCCCCEEEEEe
Confidence 46766566654
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.29 E-value=0.0018 Score=58.27 Aligned_cols=195 Identities=15% Similarity=0.097 Sum_probs=121.9
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEec-CCCCEEEEEeCCCcEEEEeCCCCceeEEEeC--CC-c---
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALP-LRSDKLYSGSRDGTVQLWDCHTGQSASVINL--GA-E--- 235 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~-~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~--~~-~--- 235 (432)
.+++.-..+.|+.|+..++......+.+ ...+++. ++ ..|+.+..++ +.++|..+++....... .. .
T Consensus 14 l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~ 87 (246)
T PF08450_consen 14 LYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNR 87 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEE
T ss_pred EEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCC
Confidence 4555556788999999887433333322 7777787 56 4555555554 55669999876655554 11 1
Q ss_pred eeeE--EECCCEEEEEcC---------CeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCC
Q 014003 236 VGSL--ICEGPWVFVGMP---------NVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPN 301 (432)
Q Consensus 236 ~~~~--~~~~~~l~~~~~---------~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~ 301 (432)
...+ ..++.+.++... +.+..++.. ++.............++++++ ++++-+..+.|..+++...
T Consensus 88 ~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~ 166 (246)
T PF08450_consen 88 PNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD 166 (246)
T ss_dssp EEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT
T ss_pred CceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEecccc
Confidence 1222 246776665422 456667777 454444444666789999988 4456778889999998754
Q ss_pred CCC--ccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc
Q 014003 302 TQN--PFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW 365 (432)
Q Consensus 302 ~~~--~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~ 365 (432)
... ..+....+.........++++ |++.++....+.|.++|.+ |+.+..+.-....+++++|-
T Consensus 167 ~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 167 GGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred ccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 321 011122222222235678887 7777777788999999988 89888887665678888885
No 302
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00024 Score=71.13 Aligned_cols=213 Identities=14% Similarity=0.175 Sum_probs=133.7
Q ss_pred CceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCc-EEEEEecCCCCEEEEEeCCCc-----EEEEeCCCCce
Q 014003 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKA-VSGIALPLRSDKLYSGSRDGT-----VQLWDCHTGQS 226 (432)
Q Consensus 153 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~-V~~l~~~~~~~~l~s~s~Dg~-----v~iWd~~~~~~ 226 (432)
...|+......++-|+.+|.|.+.+ ...+.+..++++... |+.+-...+.++|++.+.|++ |+|||++..+.
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln--~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILN--SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEec--ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 5678888888999999998776665 454666888888887 555554545578999988865 89999875421
Q ss_pred eEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCC
Q 014003 227 ASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQN 304 (432)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~ 304 (432)
... ..++ +..+++-+ .......++.+++++.+ .+++|-.+|.|..+.-.--...
T Consensus 105 n~s------P~c~------------~~~ri~~~------~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDr 160 (933)
T KOG2114|consen 105 NNS------PQCL------------YEHRIFTI------KNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDR 160 (933)
T ss_pred CCC------ccee------------eeeeeecc------CCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcc
Confidence 100 0000 00011110 01123566778888877 8999999999999853322111
Q ss_pred ccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCce-EEEecCCCCCcEEEEEc-CCE-EEEEeCCCcEE
Q 014003 305 PFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA-VMTLNGHTDAPMSLLCW-DQY-LLSCSLDNTIK 379 (432)
Q Consensus 305 ~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~-~~~~~~~~~~v~~~~~~-~~~-l~s~s~dg~i~ 379 (432)
..+ .........+|+.+++. +..++-......|.+|.+....+ ...+..|.....|.+++ +.. +++++ +..+.
T Consensus 161 gsr-~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~ 238 (933)
T KOG2114|consen 161 GSR-QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLY 238 (933)
T ss_pred ccc-eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEE
Confidence 111 11222346799999985 55523333345799999985443 45577777788888887 333 44443 45699
Q ss_pred EEEcCCCCceeEEe
Q 014003 380 VWIMTEEGNLEVAY 393 (432)
Q Consensus 380 iwd~~~~~~~~~~~ 393 (432)
+||....+....+.
T Consensus 239 fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 239 FYDSDGRGPCFAFE 252 (933)
T ss_pred EEcCCCcceeeeec
Confidence 99988766555544
No 303
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.28 E-value=0.0011 Score=60.79 Aligned_cols=230 Identities=12% Similarity=0.097 Sum_probs=140.0
Q ss_pred EEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeE-------
Q 014003 156 CYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSAS------- 228 (432)
Q Consensus 156 ~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~------- 228 (432)
|.......++.|.++| +.+++........... +...|..+...++-+.|+.-+ |+++.++++..-....
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence 3344566788888888 8888884332333333 233499999988877777665 5999999987654333
Q ss_pred --------EEeCCCceeeEE-----ECCCEEEEEcCCeEEEEEccCC-----ceEeecCCcCCEEEEEEcCCEEEEEECC
Q 014003 229 --------VINLGAEVGSLI-----CEGPWVFVGMPNVVKAWHIESS-----AEFSLDGPVGEVYSMVVANEMLFAGAQD 290 (432)
Q Consensus 229 --------~~~~~~~~~~~~-----~~~~~l~~~~~~~i~vwd~~~~-----~~~~~~~~~~~v~~l~~~~~~l~~g~~d 290 (432)
.+.....+..+. .....+++.....|.+|..... ...........+.++.|.++.++.|..+
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~ 157 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSK 157 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCC
Confidence 122222233333 2445777777889998877653 2334445567889999998888888855
Q ss_pred CcEEEEECCCCCCCccccce-------eeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEE--EecCCCCCcEE
Q 014003 291 GNILVWKGIPNTQNPFQLAA-------LLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVM--TLNGHTDAPMS 361 (432)
Q Consensus 291 g~i~~wd~~~~~~~~~~~~~-------~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~--~~~~~~~~v~~ 361 (432)
+ ..+.|+.++......... .......++..+..+.+.++.+. |..-...|. .|++.+ .+.- ...+.+
T Consensus 158 ~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~-~~~g~fv~~-~G~~~r~~~i~W-~~~p~~ 233 (275)
T PF00780_consen 158 G-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY-DNIGVFVNK-NGEPSRKSTIQW-SSAPQS 233 (275)
T ss_pred c-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe-cceEEEEcC-CCCcCcccEEEc-CCchhE
Confidence 4 778898866532111000 00111234555555533333333 333334443 454433 2222 235678
Q ss_pred EEEcCCEEEEEeCCCcEEEEEcCCCCceeEEee
Q 014003 362 LLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYT 394 (432)
Q Consensus 362 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 394 (432)
+.+...||++.+.++ |.||++.+++.++.+..
T Consensus 234 ~~~~~pyli~~~~~~-iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 234 VAYSSPYLIAFSSNS-IEVRSLETGELVQTIPL 265 (275)
T ss_pred EEEECCEEEEECCCE-EEEEECcCCcEEEEEEC
Confidence 888888998887755 99999999987766653
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4.6e-05 Score=69.69 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=72.6
Q ss_pred EEEEeCCCCcEEEEEEecccCcEEEEEecCCCC-EEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcC
Q 014003 173 WHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMP 251 (432)
Q Consensus 173 i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (432)
+++.+..+- +....+.+|...|.+++|+|..+ ++..++.+.+|+|.|+++..++..+.
T Consensus 175 v~~l~~~~f-kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-------------------- 233 (463)
T KOG1645|consen 175 VQKLESHDF-KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-------------------- 233 (463)
T ss_pred eEEeccCCc-chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee--------------------
Confidence 455444333 44557788999999999999877 78899999999999999887766543
Q ss_pred CeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCC
Q 014003 252 NVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQ 303 (432)
Q Consensus 252 ~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~ 303 (432)
. ...+++++|+-+ .+.+|...|.|.+||++..+.
T Consensus 234 -----------------a-~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 234 -----------------A-YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred -----------------c-cCCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 2 266788888766 899999999999999998764
No 305
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=0.00037 Score=66.48 Aligned_cols=272 Identities=11% Similarity=0.047 Sum_probs=154.8
Q ss_pred CCCCCCCCCceecCCCCCC-----------CcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeecc
Q 014003 93 PPSYNCPKNNVRVSSGSEE-----------GTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (432)
Q Consensus 93 v~~~~~s~~g~~las~~~D-----------g~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (432)
|--+.|||.-+||+|=|.- ..++|||+.++...... ..- ..+.. ...-+-|..
T Consensus 252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF----~~~--~~~~~----------~WP~frWS~ 315 (698)
T KOG2314|consen 252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSF----PVI--KSPYL----------KWPIFRWSH 315 (698)
T ss_pred ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcce----ecc--CCCcc----------ccceEEecc
Confidence 4677899999999986542 45688988877642111 000 01011 223344433
Q ss_pred C-ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeC-----CCcEEEEeCCCCceeEEEeCCCc
Q 014003 162 G-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR-----DGTVQLWDCHTGQSASVINLGAE 235 (432)
Q Consensus 162 ~-~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~-----Dg~v~iWd~~~~~~~~~~~~~~~ 235 (432)
+ ..++.-.-..|.||+..+- .++..-.-.-+.|....|+|.++.||-=.. -.++.+-.+.+++.+++.....-
T Consensus 316 DdKy~Arm~~~sisIyEtpsf-~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV 394 (698)
T KOG2314|consen 316 DDKYFARMTGNSISIYETPSF-MLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV 394 (698)
T ss_pred CCceeEEeccceEEEEecCce-eeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceee
Confidence 3 2222222266889987552 222211123467888999999888774332 13456666666666665554332
Q ss_pred eee---EEECCCEEEEEcC-----------CeEEEEEccCCce-EeecCCcCCEEEEEEcCC--EEEE--E-ECCCcEEE
Q 014003 236 VGS---LICEGPWVFVGMP-----------NVVKAWHIESSAE-FSLDGPVGEVYSMVVANE--MLFA--G-AQDGNILV 295 (432)
Q Consensus 236 ~~~---~~~~~~~l~~~~~-----------~~i~vwd~~~~~~-~~~~~~~~~v~~l~~~~~--~l~~--g-~~dg~i~~ 295 (432)
..| ...+|.+|+.-.+ ..+.|+.++.... +..-.....|..++|.|. .+++ | ....++.+
T Consensus 395 sDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsf 474 (698)
T KOG2314|consen 395 SDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSF 474 (698)
T ss_pred eccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeE
Confidence 222 2246777765322 1455566655442 334455677888999887 3333 2 23467889
Q ss_pred EECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEE---eCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCE
Q 014003 296 WKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSG---SMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQY 368 (432)
Q Consensus 296 wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sg---s~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~ 368 (432)
|.+.+... ...++..+.. ...+.+.|+ |++++.+ |..|.+..+|+.-..+..+-.......+.+.|+ |+|
T Consensus 475 Y~~e~~~~-~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRY 551 (698)
T KOG2314|consen 475 YAVETNIK-KPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRY 551 (698)
T ss_pred EEeecCCC-chhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCE
Confidence 98875322 1344555543 445667777 8887765 457899999987433333222222334566666 899
Q ss_pred EEEEeC------CCcEEEEEcC
Q 014003 369 LLSCSL------DNTIKVWIMT 384 (432)
Q Consensus 369 l~s~s~------dg~i~iwd~~ 384 (432)
+++++. |.--++|++.
T Consensus 552 vvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 552 VVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred EEEeeehhhhccccceEEEEee
Confidence 999986 3445666654
No 306
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.23 E-value=0.0028 Score=67.44 Aligned_cols=331 Identities=15% Similarity=0.134 Sum_probs=173.5
Q ss_pred CCCCCCCCCCCceecCCCCCCCcccc----cccCCCCCCCC----CCcccccCCCCC-----CCCCc-------------
Q 014003 91 KSPPSYNCPKNNVRVSSGSEEGTTHV----QNRENPDRTVP----NKSSLDCSTGSD-----DSGSK------------- 144 (432)
Q Consensus 91 ~~v~~~~~s~~g~~las~~~Dg~i~i----W~~~~~~~~~~----~~~~~~~~~~~~-----~~~~~------------- 144 (432)
.+|.+++||||+..||-...+|++-+ |+.-......+ ...+..+-+|.- .++.+
T Consensus 121 ~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~ 200 (928)
T PF04762_consen 121 SGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPK 200 (928)
T ss_pred CcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCc
Confidence 48899999999999988877888866 32211110000 011111111111 00000
Q ss_pred ---eeeeecCCCceEEeeccC--ceeeCC------CCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeC-
Q 014003 145 ---RTLERTTPKNVCYHWLSG--NCVKGD------ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR- 212 (432)
Q Consensus 145 ---~~~~~~~~~~~~~~~~~~--~~~~g~------~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~- 212 (432)
..+. .....+...|-++ .++..+ .-+.++||+-+. ....+-+.-.+-=.+++|-|.|+++|+...
T Consensus 201 ~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG--~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~ 277 (928)
T PF04762_consen 201 VDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG--ELQSTSEPVDGLEGALSWRPSGNLIASSQRL 277 (928)
T ss_pred cccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc--eEEeccccCCCccCCccCCCCCCEEEEEEEc
Confidence 0111 2234566667665 333222 247899999863 222222222233356899999999998865
Q ss_pred --CCcEEEEeCCCCceeEEEeCC-----CceeeEE--ECCCEEEEEcCCeEEEEEccCCc-----eEeecCCcCCEEEEE
Q 014003 213 --DGTVQLWDCHTGQSASVINLG-----AEVGSLI--CEGPWVFVGMPNVVKAWHIESSA-----EFSLDGPVGEVYSMV 278 (432)
Q Consensus 213 --Dg~v~iWd~~~~~~~~~~~~~-----~~~~~~~--~~~~~l~~~~~~~i~vwd~~~~~-----~~~~~~~~~~v~~l~ 278 (432)
.-.|.+|.- +|..-..|... ..+..+. +++.+|++.....|.+|...+-. .+.+ .....+..+.
T Consensus 278 ~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~-~~~~~~~~~~ 355 (928)
T PF04762_consen 278 PDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRF-SSSESVNFVK 355 (928)
T ss_pred CCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEc-cCCCCCCceE
Confidence 345666664 35555555543 3344444 48889998877779999887654 1222 2233344588
Q ss_pred EcCC---EEEEEECCCcEEEEECC----CCCCC-------------------cc------ccc--eeeeccccCeEEEEE
Q 014003 279 VANE---MLFAGAQDGNILVWKGI----PNTQN-------------------PF------QLA--ALLKGHTRPVTCLAV 324 (432)
Q Consensus 279 ~~~~---~l~~g~~dg~i~~wd~~----~~~~~-------------------~~------~~~--~~~~~h~~~v~~l~~ 324 (432)
|++. .|.+.+.+|.+..+++. .+... ++ .+. ..+ .-..+|.+++|
T Consensus 356 Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf 434 (928)
T PF04762_consen 356 WDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAF 434 (928)
T ss_pred ECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEE
Confidence 8876 67777776777655432 11100 00 000 111 13467889999
Q ss_pred e--CCEEEEEeCCCeEEEEECCCCce--------EEEecC----------CCCCcEEEEEc-CC-EEEEEeCC---CcEE
Q 014003 325 G--GKRLYSGSMDNTIRVWDLDTLEA--------VMTLNG----------HTDAPMSLLCW-DQ-YLLSCSLD---NTIK 379 (432)
Q Consensus 325 ~--~~~l~sgs~dg~I~vwd~~~~~~--------~~~~~~----------~~~~v~~~~~~-~~-~l~s~s~d---g~i~ 379 (432)
+ +..+++-..||.|.+|....... ...+.. .......+.|. ++ .++....+ ..+.
T Consensus 435 ~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 514 (928)
T PF04762_consen 435 SPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIV 514 (928)
T ss_pred eCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEE
Confidence 7 45599999999999998543221 111111 12235566666 33 33443333 5788
Q ss_pred EEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 380 VWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 380 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
++++...+........... ..........++.. .++.-..||.+...+
T Consensus 515 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~q~~~G~v~~~~ 562 (928)
T PF04762_consen 515 LVDIDDSENSASVESSTEV-DGVVLIISSSPDSG-SLYIQTNDGKVFQLS 562 (928)
T ss_pred EEEeccCCCceeEEEEecc-CceEEEEeeCCCCc-EEEEEECCCEEEEee
Confidence 8888544322222111111 11112112233333 355556677776544
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.20 E-value=5.6e-06 Score=50.88 Aligned_cols=35 Identities=43% Similarity=0.730 Sum_probs=25.4
Q ss_pred cceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEE
Q 014003 308 LAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWD 342 (432)
Q Consensus 308 ~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd 342 (432)
++..+.+|..+|.+++|+ +++|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 456677777777777776 67777777777777776
No 308
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.19 E-value=0.001 Score=57.75 Aligned_cols=259 Identities=14% Similarity=0.133 Sum_probs=137.9
Q ss_pred ccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEE-EEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCcee-
Q 014003 160 LSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSG-IALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG- 237 (432)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~-l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~- 237 (432)
.++.++-|...|.+.+-+..++ .....+..- +.|.+ -...+++.++..|+.|++...-|..+..++...+.+..+.
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tG-s~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~ 139 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTG-SQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFV 139 (354)
T ss_pred ECCEEEEEEccCcEEEEEecch-hheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceec
Confidence 3445888888999999999888 445444432 22322 2346789999999999999999999999888877655442
Q ss_pred --eEEE-CCCEEEEEcCCeEEEEEccCCc--eEeecCCcCCEEEE-EEcCCEEEEEECCCcEEEEE--------CCCCCC
Q 014003 238 --SLIC-EGPWVFVGMPNVVKAWHIESSA--EFSLDGPVGEVYSM-VVANEMLFAGAQDGNILVWK--------GIPNTQ 303 (432)
Q Consensus 238 --~~~~-~~~~l~~~~~~~i~vwd~~~~~--~~~~~~~~~~v~~l-~~~~~~l~~g~~dg~i~~wd--------~~~~~~ 303 (432)
.+.. ++.+.++...|.+..-+.+... .+-.....+++.+- .+-...+..+.-||.+.-+| .+++..
T Consensus 140 sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~Gp 219 (354)
T KOG4649|consen 140 SPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKGP 219 (354)
T ss_pred cceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCCc
Confidence 2333 5566666677766666655542 22222222333221 11112333444555555444 333321
Q ss_pred Cccccceeeeccc-cCeEEEEEe-CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc------CCEEEEEeCC
Q 014003 304 NPFQLAALLKGHT-RPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW------DQYLLSCSLD 375 (432)
Q Consensus 304 ~~~~~~~~~~~h~-~~v~~l~~~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~------~~~l~s~s~d 375 (432)
+..-.... .....+.+. .+-+++...-.--.+|..++|...+...... ..+.+. +++|..++.|
T Consensus 220 -----If~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~---l~F~~h~~~~S~~~ll~~~s~d 291 (354)
T KOG4649|consen 220 -----IFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK---LRFDLHSPGISYPKLLRRSSGD 291 (354)
T ss_pred -----eecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc---cceeccCCCCcchhhhhhhcCC
Confidence 11100001 111223332 3344443333334577777775544332111 111111 4678888999
Q ss_pred CcEEEEEcCCCCceeEEeeccCCcceEE---E--eeeeCC---CCCcEEEEEeCCCeEEEeeCCC
Q 014003 376 NTIKVWIMTEEGNLEVAYTHNEDHGVLA---L--GGLNDP---DGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 376 g~i~iwd~~~~~~~~~~~~~~~~~~~~~---~--~~~~sp---~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
|++.|--.+ +.+.....+..+...+. + ...-|| +|+ |+.|+.|..|+-||+.+
T Consensus 292 gkv~il~~~--~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~gr--l~igcRDdYv~cldl~~ 352 (354)
T KOG4649|consen 292 GKVMILMTS--KSLAEISSNGGELQNLEAIELSNEIFSSPVIIDGR--LLIGCRDDYVRCLDLDT 352 (354)
T ss_pred CcEEEEEec--ccccccccCCCccceEEEeecCcccccCCeEEccE--EEEEEccCeEEEEeccc
Confidence 988776332 22222222222222111 0 000033 354 77788999999999875
No 309
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.19 E-value=0.0001 Score=72.16 Aligned_cols=284 Identities=13% Similarity=0.117 Sum_probs=154.6
Q ss_pred CCCCCCCCCCCCCCCCC-CCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCC-CceEEee
Q 014003 82 QTLPVSNHKKSPPSYNC-PKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP-KNVCYHW 159 (432)
Q Consensus 82 ~~~~~~gh~~~v~~~~~-s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 159 (432)
|...++|-.....-+.+ +..++|++-|+.-|.+-++++.++.....+.. + .+.. -..|.+.
T Consensus 24 ~~~~~~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~------~-----------~~~~~~~~~vs~ 86 (726)
T KOG3621|consen 24 PALLQPGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE------G-----------ATGITCVRSVSS 86 (726)
T ss_pred hhhhccccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhccccc------C-----------ccceEEEEEecc
Confidence 44444554444444444 88999999999999999998776653211110 0 0000 1345566
Q ss_pred ccCceeeCCCCCeEEEEeCCCCcEEEEE----E-ecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC-----ceeEE
Q 014003 160 LSGNCVKGDECRFWHSWFCGEGFTMLAK----L-EGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-----QSASV 229 (432)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~----l-~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~-----~~~~~ 229 (432)
....+++|+..|.|.|+.++.....-.. + +.|...|++++|++++..|++|...|+|..-.+.+. .....
T Consensus 87 ~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i 166 (726)
T KOG3621|consen 87 VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI 166 (726)
T ss_pred hhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhcccccee
Confidence 6668889999999999998654222222 2 237889999999999999999999999999888772 22233
Q ss_pred EeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceE--eecCCcC--CEEEEEEcC----C--EEEEEECCCcEEEEECC
Q 014003 230 INLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEF--SLDGPVG--EVYSMVVAN----E--MLFAGAQDGNILVWKGI 299 (432)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~--~~~~~~~--~v~~l~~~~----~--~l~~g~~dg~i~~wd~~ 299 (432)
+.....+..+..-..++.++.--.-.+++.+.+... -.+...+ ..-++.+.+ . .|+++--. .++|..+
T Consensus 167 l~~ds~IVQlD~~q~~LLVStl~r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG--~RlWead 244 (726)
T KOG3621|consen 167 LSEDSEIVQLDYLQSYLLVSTLTRCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG--LRLWEAD 244 (726)
T ss_pred eccCcceEEeecccceehHhhhhhhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC--CceEEee
Confidence 334455555554333333332222233333332211 1111111 122222222 1 33333222 2344322
Q ss_pred CCCC---------------Ccccccee-----------eeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEec
Q 014003 300 PNTQ---------------NPFQLAAL-----------LKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLN 353 (432)
Q Consensus 300 ~~~~---------------~~~~~~~~-----------~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~ 353 (432)
-... .+...... -..|-+-..+...++..+++=++-| |+|+|.++.+.+.-..
T Consensus 245 ~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~l~se 323 (726)
T KOG3621|consen 245 FAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVYLWSE 323 (726)
T ss_pred cceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEEEeec
Confidence 1100 00000000 0011122223333455555555555 9999988765544432
Q ss_pred CCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCC
Q 014003 354 GHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEE 386 (432)
Q Consensus 354 ~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~ 386 (432)
....|..++..++-|+.--.|+.+++..+.+.
T Consensus 324 -~~~DI~dVs~~~neiFvL~~d~~l~~~sv~s~ 355 (726)
T KOG3621|consen 324 -GGHDILDVSHCGNEIFVLNLDRGLKVESVASR 355 (726)
T ss_pred -CCCceeEEeecCceEEEEecCCceeEEEeehh
Confidence 34457788888887777778887777776543
No 310
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.18 E-value=0.0023 Score=62.18 Aligned_cols=200 Identities=11% Similarity=0.018 Sum_probs=106.9
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCE-EEEEeCC---CcEEEEeCCCCceeEEEeCCCceeeEEECCCEE
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDK-LYSGSRD---GTVQLWDCHTGQSASVINLGAEVGSLICEGPWV 246 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~-l~s~s~D---g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (432)
..|.+=|.+... ......+ +.+..-.|+|+|+. ++..+.+ ..|.++|+.+++.....
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---------------- 229 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---------------- 229 (419)
T ss_pred ceEEEECCCCCc-eeEEccC--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe----------------
Confidence 345554554432 2222233 37788999999984 5544443 45777777766544332
Q ss_pred EEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECC--CcEEEEECCCCCCCccccceeeeccccCeEE
Q 014003 247 FVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQD--GNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (432)
Q Consensus 247 ~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~d--g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 321 (432)
...+......|+|| ++++.+.+ ..|.++|+..+.. ..+..+......
T Consensus 230 ----------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~------~~LT~~~~~d~~ 281 (419)
T PRK04043 230 ----------------------SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL------TQITNYPGIDVN 281 (419)
T ss_pred ----------------------cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE------EEcccCCCccCc
Confidence 22333444556666 33333333 4688888776642 222222221222
Q ss_pred EEEe--CCEEEEEeC-CC--eEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeCC---------CcEEEEEcCCCC
Q 014003 322 LAVG--GKRLYSGSM-DN--TIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLD---------NTIKVWIMTEEG 387 (432)
Q Consensus 322 l~~~--~~~l~sgs~-dg--~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~ 387 (432)
..|+ |+.|+-.+. .+ .|++.|+.+++..+.... ......++.+|++|+..+.. ..|.+.|+.++.
T Consensus 282 p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 282 GNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred cEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 3454 776665553 23 688889988777443321 11223444447777666543 267888887765
Q ss_pred ceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCe
Q 014003 388 NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDS 424 (432)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~ 424 (432)
. ..+... .... ...|+|||+.++++....+.
T Consensus 361 ~-~~LT~~-~~~~----~p~~SPDG~~I~f~~~~~~~ 391 (419)
T PRK04043 361 I-RRLTAN-GVNQ----FPRFSSDGGSIMFIKYLGNQ 391 (419)
T ss_pred e-EECCCC-CCcC----CeEECCCCCEEEEEEccCCc
Confidence 3 333222 1112 24459999966666544444
No 311
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.16 E-value=3.2e-05 Score=68.35 Aligned_cols=229 Identities=14% Similarity=0.227 Sum_probs=140.4
Q ss_pred ceEEeeccCceeeCCCCCeEEEEeCCCC----cEEEEEEeccc------------CcEEEEEecCCC--CEEEEEeCCCc
Q 014003 154 NVCYHWLSGNCVKGDECRFWHSWFCGEG----FTMLAKLEGHK------------KAVSGIALPLRS--DKLYSGSRDGT 215 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~----~~~~~~l~~H~------------~~V~~l~~~~~~--~~l~s~s~Dg~ 215 (432)
.+-+...+..+++|+..|.|.++.-+.. .+....+++|+ ..|..|.|..++ ..++..+.|++
T Consensus 31 aVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdkt 110 (460)
T COG5170 31 AVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKT 110 (460)
T ss_pred EEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCce
Confidence 3445556668999999999999987543 23445577776 468888885443 45777788999
Q ss_pred EEEEeCCCCcee---------------------------EEEeCCCc-----------------eeeEE--ECCCEEEEE
Q 014003 216 VQLWDCHTGQSA---------------------------SVINLGAE-----------------VGSLI--CEGPWVFVG 249 (432)
Q Consensus 216 v~iWd~~~~~~~---------------------------~~~~~~~~-----------------~~~~~--~~~~~l~~~ 249 (432)
|++|.+...... ..+..+.. +.++. .+...+..+
T Consensus 111 iKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa 190 (460)
T COG5170 111 IKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA 190 (460)
T ss_pred eeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeec
Confidence 999987543100 00000111 11122 245566667
Q ss_pred cCCeEEEEEccCCc----eEeec-----CCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCC-----cccc----
Q 014003 250 MPNVVKAWHIESSA----EFSLD-----GPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQN-----PFQL---- 308 (432)
Q Consensus 250 ~~~~i~vwd~~~~~----~~~~~-----~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~-----~~~~---- 308 (432)
.+-.|.+|+++-.. .+... .....|++..|+|. .+...+..|.|++-|+++.... .++.
T Consensus 191 DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~ 270 (460)
T COG5170 191 DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDG 270 (460)
T ss_pred cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCc
Confidence 77789999876432 22222 22345778888887 7777889999999999854321 0000
Q ss_pred --ceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCC-ceEEEecCCCC------------Cc---EEEEEc--C
Q 014003 309 --AALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL-EAVMTLNGHTD------------AP---MSLLCW--D 366 (432)
Q Consensus 309 --~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~-~~~~~~~~~~~------------~v---~~~~~~--~ 366 (432)
..-+.+-...|..+.|+ |+++++-+ --++++||.+.. .++.++.-|.. .| ..+.++ +
T Consensus 271 v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~ 349 (460)
T COG5170 271 VDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDD 349 (460)
T ss_pred ccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCc
Confidence 01122234567778887 66776654 468999999864 56777755532 12 234445 3
Q ss_pred CEEEEEeCCCcEEEEEc
Q 014003 367 QYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 367 ~~l~s~s~dg~i~iwd~ 383 (432)
..+++|+..+..-++-+
T Consensus 350 ~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 350 KHVLSGSYSNNFGIYPT 366 (460)
T ss_pred ccccccccccceeeecc
Confidence 56777777766666653
No 312
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.15 E-value=1.6e-06 Score=86.17 Aligned_cols=190 Identities=14% Similarity=0.188 Sum_probs=126.6
Q ss_pred cEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccC
Q 014003 182 FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIES 261 (432)
Q Consensus 182 ~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 261 (432)
++...++..|+...+|++|+-+.+.|+.|+..|.|+++++.+|......
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~------------------------------- 1139 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV------------------------------- 1139 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-------------------------------
Confidence 4567778899999999999999999999999999999999998765543
Q ss_pred CceEeecCCcCCEEEEEEcCC---EEEEEECCC-cEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCC
Q 014003 262 SAEFSLDGPVGEVYSMVVANE---MLFAGAQDG-NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMD 335 (432)
Q Consensus 262 ~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg-~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d 335 (432)
..|...|+-+..+.+ .|.+++... -..+|++... ..+.+.+.. -.++.|+ -..-+.|+.-
T Consensus 1140 ------ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~----~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~ 1205 (1516)
T KOG1832|consen 1140 ------NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST----GGPRHSFDE----DKAVKFSNSLQFRALGTEA 1205 (1516)
T ss_pred ------cccccccccccccCCcceeeeeccccCchHHHhccccc----cCccccccc----cceeehhhhHHHHHhcccc
Confidence 467777877777665 344444333 5778998763 234444432 2467776 2333455555
Q ss_pred CeEEEEECCCCceEEEe-cCC---CCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeC
Q 014003 336 NTIRVWDLDTLEAVMTL-NGH---TDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLND 409 (432)
Q Consensus 336 g~I~vwd~~~~~~~~~~-~~~---~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~s 409 (432)
....+||++++.++.++ .+. ...-....|+ +.+++ .|| .+||++..+.+..+.... ....+.|+
T Consensus 1206 d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft-----~~~~G~FH 1275 (1516)
T KOG1832|consen 1206 DDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFT-----DYGGGGFH 1275 (1516)
T ss_pred cceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhe-----eccccccc
Confidence 67899999999887774 221 1112334444 34443 355 379999886665554432 34456679
Q ss_pred CCCCcEEEEEeCCCeEEEeeCCC
Q 014003 410 PDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 410 p~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
|.|..+++ -+ .|||++|
T Consensus 1276 P~g~eVII-NS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1276 PSGNEVII-NS-----EIWDMRT 1292 (1516)
T ss_pred CCCceEEe-ec-----hhhhhHH
Confidence 99985554 33 3788764
No 313
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.10 E-value=0.00011 Score=73.76 Aligned_cols=178 Identities=13% Similarity=0.157 Sum_probs=125.5
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC-CCceeeE
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL-GAEVGSL 239 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~~~~ 239 (432)
...++-|+--..+-.+|+.+. +..+...--.+.|+-+. .++++|.+|...|+|.+-|.++-+.++++.. .+.+..+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~-~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTE-KETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred Ccceeecchhhheeeeecccc-eeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 446777777777778888776 44444444444576666 4689999999999999999999999999984 4556677
Q ss_pred EECCCEEEE-E---------cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCcc
Q 014003 240 ICEGPWVFV-G---------MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPF 306 (432)
Q Consensus 240 ~~~~~~l~~-~---------~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~ 306 (432)
...|+.+++ | .|.-|++||++.-+.+........-.-+.+.|. .+++++..|...+-|..+-.+..
T Consensus 224 Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~- 302 (1118)
T KOG1275|consen 224 DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP- 302 (1118)
T ss_pred eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCc-
Confidence 777776654 3 255789999998876644433333344566666 89999999999999954432210
Q ss_pred ccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEE
Q 014003 307 QLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWD 342 (432)
Q Consensus 307 ~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd 342 (432)
.-+.........+..++++ ++.++.|..+|.|.+|-
T Consensus 303 ~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 303 AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 1122222333447777775 99999999999999997
No 314
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.09 E-value=0.0082 Score=55.26 Aligned_cols=254 Identities=15% Similarity=0.170 Sum_probs=151.8
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeC----------CCcEEEEeCCCCceeEEEeCCCc--e--
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR----------DGTVQLWDCHTGQSASVINLGAE--V-- 236 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~----------Dg~v~iWd~~~~~~~~~~~~~~~--~-- 236 (432)
+.+.|+|.+++ +.+-.+.. +-.-.+..+|+++.+++++. .-.|.+||..+-+....+..... .
T Consensus 17 ~rv~viD~d~~-k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSG-KLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTT-EEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCC-cEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 47999999887 66666553 22333567899999887532 34689999999988887776542 1
Q ss_pred ------eeEEECCCEEEEE---cCCeEEEEEccCCceEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccc
Q 014003 237 ------GSLICEGPWVFVG---MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQ 307 (432)
Q Consensus 237 ------~~~~~~~~~l~~~---~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~ 307 (432)
..+..+++++.+. -...|.+.|+..++........+...-.-..++.+.+-+.||++....+....+...+
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 1233477777665 3468888899888877655555544444444568889999999999998854432111
Q ss_pred cceeeeccccCeE-EEEEe--CCEEEEEeCCCeEEEEECCCCceE--EEecCCC----------CCcEEEEEc--CCEEE
Q 014003 308 LAALLKGHTRPVT-CLAVG--GKRLYSGSMDNTIRVWDLDTLEAV--MTLNGHT----------DAPMSLLCW--DQYLL 370 (432)
Q Consensus 308 ~~~~~~~h~~~v~-~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~--~~~~~~~----------~~v~~~~~~--~~~l~ 370 (432)
....+....+++. .-++. +..++--+.+|.|+--|+...... ..+.--. +.-.-++++ .+.|+
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY 253 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence 1122222223332 22222 456666788999999998765432 2221110 111122333 33333
Q ss_pred EE---eC-----CC--cEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEe-CCCeEEEeeCCC
Q 014003 371 SC---SL-----DN--TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC-NDDSVHLYELPS 432 (432)
Q Consensus 371 s~---s~-----dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~-~Dg~I~iwdl~s 432 (432)
.- +. |+ .|-++|+.+.+.+..+... .++..+.+ +.+.+++|++.+ .++.|.+||..|
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~V----sqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAV----SQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEE----ESSSS-EEEEEETTTTEEEEEETTT
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEE----ccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 22 11 22 3666788888877776643 23445666 678888887654 589999999865
No 315
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.09 E-value=0.0017 Score=69.10 Aligned_cols=259 Identities=12% Similarity=0.049 Sum_probs=144.7
Q ss_pred CceEEeeccC--ceeeCCCCCeEEEE----eCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCce
Q 014003 153 KNVCYHWLSG--NCVKGDECRFWHSW----FCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS 226 (432)
Q Consensus 153 ~~~~~~~~~~--~~~~g~~d~~i~vw----~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~ 226 (432)
..+.+.+... .++.+..+|.|-+. +.++. .+...-.-...|.+++||||+..|+....++++.+-+ .+.+.
T Consensus 77 ~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~--~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~ 153 (928)
T PF04762_consen 77 KIVSFQYLADSESLCIALASGDIILVREDPDPDED--EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDP 153 (928)
T ss_pred cEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc--eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceE
Confidence 3444444443 56666667777777 44432 2222333468999999999999999999999988875 34555
Q ss_pred eEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCce---------------EeecCCcCCEEEEEEcCC--EEEEEEC
Q 014003 227 ASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAE---------------FSLDGPVGEVYSMVVANE--MLFAGAQ 289 (432)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~---------------~~~~~~~~~v~~l~~~~~--~l~~g~~ 289 (432)
+........-. ...+.+.+|....=.-+.-..++. -... ....-..++|-+| ++|+.+.
T Consensus 154 i~E~~l~~~~~---~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 154 ISEVPLDSDDF---GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred EEEeecCcccc---CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEE
Confidence 55544332110 113344444322211111111110 0111 3345567888888 7776653
Q ss_pred ---C---CcEEEEECCCCCCCccccceeeeccccCeEEEEE--eCCEEEEEeC---CCeEEEEECCCCceEEEe----cC
Q 014003 290 ---D---GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV--GGKRLYSGSM---DNTIRVWDLDTLEAVMTL----NG 354 (432)
Q Consensus 290 ---d---g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~---dg~I~vwd~~~~~~~~~~----~~ 354 (432)
. ..+++|+-. +. +....+.-.+--.+++| +|+++|+... ...|.+|.- +|-.-..| ..
T Consensus 230 ~~~~~~~R~iRVy~Re-G~-----L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~ 302 (928)
T PF04762_consen 230 EPETGSRRVIRVYSRE-GE-----LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDP 302 (928)
T ss_pred EcCCCceeEEEEECCC-ce-----EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCC
Confidence 3 478999855 22 11111111122235666 4888888765 346777764 44433333 23
Q ss_pred CCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeE--Ee-eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 355 HTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEV--AY-THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 355 ~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~--~~-~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
....|..+.|+ +..|+..-.|. |.+|-..+..-... +. ........ +.|+|.....|...+.+|.+..++
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~----~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNF----VKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCc----eEECCCCCCEEEEEecCCcEEEEE
Confidence 45678999998 57777766554 99998876542111 11 11222222 445887766777777778877665
Q ss_pred C
Q 014003 430 L 430 (432)
Q Consensus 430 l 430 (432)
+
T Consensus 378 ~ 378 (928)
T PF04762_consen 378 F 378 (928)
T ss_pred E
Confidence 4
No 316
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=2.3e-05 Score=72.56 Aligned_cols=198 Identities=14% Similarity=0.168 Sum_probs=140.7
Q ss_pred EEeeccCceeeCCCCCeEEEEeCC--CCcEEEEEEecccCcEEEEEecCCCCEEEEEeC-CCcEEEEeCCCCceeEEEeC
Q 014003 156 CYHWLSGNCVKGDECRFWHSWFCG--EGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR-DGTVQLWDCHTGQSASVINL 232 (432)
Q Consensus 156 ~~~~~~~~~~~g~~d~~i~vw~~~--~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~ 232 (432)
|+.-.+..+.+++.||.++.|.-. .+.+.+..+..|-..|.+++.+.++.++.|.+. |..++++|+++-..+..+..
T Consensus 15 v~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL 94 (558)
T KOG0882|consen 15 VFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL 94 (558)
T ss_pred EeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccc
Confidence 444456688999999999999874 456777788899999999999999999999887 99999999986554433221
Q ss_pred CCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EE-EEEECCCcEEEEECCCCCCCcccc
Q 014003 233 GAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---ML-FAGAQDGNILVWKGIPNTQNPFQL 308 (432)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l-~~g~~dg~i~~wd~~~~~~~~~~~ 308 (432)
....+.+..+.-.++ .+ ++.-.+|.+.++|-..... +.
T Consensus 95 -----------------------------------~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~---q~ 136 (558)
T KOG0882|consen 95 -----------------------------------VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC---QD 136 (558)
T ss_pred -----------------------------------ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC---cc
Confidence 112222222222222 23 3455788999999776642 34
Q ss_pred ceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCC------CceEEEec---------CCCCCcEEEEEc--CCEE
Q 014003 309 AALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDT------LEAVMTLN---------GHTDAPMSLLCW--DQYL 369 (432)
Q Consensus 309 ~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~------~~~~~~~~---------~~~~~v~~~~~~--~~~l 369 (432)
...-+-|..+|.++.++ +..+++....|.|.-|..+. .+....++ .......++.++ +..+
T Consensus 137 ~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qi 216 (558)
T KOG0882|consen 137 GYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQI 216 (558)
T ss_pred ceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcc
Confidence 55556799999999987 88899999999999999872 11222221 122335566665 7899
Q ss_pred EEEeCCCcEEEEEcCCCCceeE
Q 014003 370 LSCSLDNTIKVWIMTEEGNLEV 391 (432)
Q Consensus 370 ~s~s~dg~i~iwd~~~~~~~~~ 391 (432)
.+-+.|..|+++++++++.++.
T Consensus 217 stl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 217 STLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred cccCcccEEEEEEeccchhhhh
Confidence 9999999999999988765443
No 317
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=5.4e-05 Score=70.21 Aligned_cols=225 Identities=17% Similarity=0.046 Sum_probs=144.4
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCC-CCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEee----
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSE-EGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHW---- 159 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~-Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 159 (432)
.+..|-..|.+++.+.+|....|.+. |..+|+.++++-... ++.. ..+ .+...|...
T Consensus 48 hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmi--nmiK-----L~~-----------lPg~a~wv~skGd 109 (558)
T KOG0882|consen 48 HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMI--NMIK-----LVD-----------LPGFAEWVTSKGD 109 (558)
T ss_pred hhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchh--hhcc-----ccc-----------CCCceEEecCCCC
Confidence 34567788999999999999999888 999999988764431 0000 000 011111111
Q ss_pred -ccCceeeCCCCCeEEEEeCCCCc-EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCC-CceeEEEeCCCce
Q 014003 160 -LSGNCVKGDECRFWHSWFCGEGF-TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT-GQSASVINLGAEV 236 (432)
Q Consensus 160 -~~~~~~~g~~d~~i~vw~~~~~~-~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~~~ 236 (432)
.+...++...++.+.|+|-.... +....-.-|..+|..+.+.+-+..+++....|.|.-|..+. -+..+.-
T Consensus 110 ~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~------ 183 (558)
T KOG0882|consen 110 KISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTN------ 183 (558)
T ss_pred eeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccc------
Confidence 12244566678899999986554 33334456999999999999999999999999999999873 1111110
Q ss_pred eeEEECCCEEEEEcCCeEEEEEccCCc-eEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCc--------
Q 014003 237 GSLICEGPWVFVGMPNVVKAWHIESSA-EFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNP-------- 305 (432)
Q Consensus 237 ~~~~~~~~~l~~~~~~~i~vwd~~~~~-~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~-------- 305 (432)
.-|.++... .+..........++.++++ .+.+-+.|..|+++++.+++..+
T Consensus 184 ------------------l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 184 ------------------LNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ------------------ccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 002222221 1223344556677888877 77777799999999988765310
Q ss_pred --------cc-----------cceeeecccc-CeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEe
Q 014003 306 --------FQ-----------LAALLKGHTR-PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTL 352 (432)
Q Consensus 306 --------~~-----------~~~~~~~h~~-~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~ 352 (432)
.. .-+.+..|.. .-+.+.|+ +++|+-|+.=| |+|.++.++++++.+
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 00 0011222222 22345666 88999888776 899999999887766
No 318
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.92 E-value=0.00094 Score=63.99 Aligned_cols=231 Identities=16% Similarity=0.165 Sum_probs=117.0
Q ss_pred cEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeE--EEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCc--------
Q 014003 194 AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSAS--VINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSA-------- 263 (432)
Q Consensus 194 ~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~-------- 263 (432)
.|+.+.|.++...|+.|...|.|.+|.....+... ......+.. .. + ....++.-.+-|+....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~-~~---~--~~~~~~~~~l~di~~r~~~~~~~gf 76 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYN-FR---R--FSLNNSPGKLTDISDRAPPSLKEGF 76 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------S----GGGSS-SEEE-GGG--TT-SEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcc-cc---c--ccccCCCcceEEehhhCCccccccc
Confidence 58899999999999999999999999876544332 000000000 00 0 00011111222332210
Q ss_pred --eEeecCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCcccccee---eeccccCeEEEEEe----------CC
Q 014003 264 --EFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAAL---LKGHTRPVTCLAVG----------GK 327 (432)
Q Consensus 264 --~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~---~~~h~~~v~~l~~~----------~~ 327 (432)
...+....++|++++.+.- ++++|.++|.+.+.|++.........+.. -......++++.|. .-
T Consensus 77 ~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 77 LPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp EEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred CchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 1123445889999999755 99999999999999998764211101111 11133467888884 24
Q ss_pred EEEEEeCCCeEEEEECC--C-Cce----EEEecCCCCCcEEEEEc----C-------------------CEEEEEeCCCc
Q 014003 328 RLYSGSMDNTIRVWDLD--T-LEA----VMTLNGHTDAPMSLLCW----D-------------------QYLLSCSLDNT 377 (432)
Q Consensus 328 ~l~sgs~dg~I~vwd~~--~-~~~----~~~~~~~~~~v~~~~~~----~-------------------~~l~s~s~dg~ 377 (432)
.+++|+..|.+.+|.+. . +.- ......+.+.+..+... + +-++....+..
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ 236 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD 236 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence 68999999999999874 1 211 22222455666555432 0 23455555788
Q ss_pred EEEEEcCCCCceeEEeeccCCcceEEEeeee--CCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 378 IKVWIMTEEGNLEVAYTHNEDHGVLALGGLN--DPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 378 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
++++...+.+...... .....+....... +..+...|++-..+|.|++|.++.
T Consensus 237 irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 237 IRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp EEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred eEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 9999988877655444 2222222222111 112334888889999999999874
No 319
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.83 E-value=0.023 Score=51.91 Aligned_cols=266 Identities=12% Similarity=0.123 Sum_probs=151.9
Q ss_pred CCCCCCCCCCCCCCCCCCCceecCCCCCC---CcccccccCC--CCCCCCCCcccccCCCCCCCCCceeeeecCCCceEE
Q 014003 83 TLPVSNHKKSPPSYNCPKNNVRVSSGSEE---GTTHVQNREN--PDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCY 157 (432)
Q Consensus 83 ~~~~~gh~~~v~~~~~s~~g~~las~~~D---g~i~iW~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (432)
.+.+..+-+.+.-++|+|++++|.++-.+ |.|-.+.++. +.....+ ........+.-++.
T Consensus 32 ~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln---------------~~~~~g~~p~yvsv 96 (346)
T COG2706 32 LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN---------------RQTLPGSPPCYVSV 96 (346)
T ss_pred hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee---------------ccccCCCCCeEEEE
Confidence 33445566777889999999999887665 4444443332 1111101 11111222234556
Q ss_pred eeccCceeeC-CCCCeEEEEeCCCC--cEEEEEEecccCc----------EEEEEecCCCCEEEEEeC-CCcEEEEeCCC
Q 014003 158 HWLSGNCVKG-DECRFWHSWFCGEG--FTMLAKLEGHKKA----------VSGIALPLRSDKLYSGSR-DGTVQLWDCHT 223 (432)
Q Consensus 158 ~~~~~~~~~g-~~d~~i~vw~~~~~--~~~~~~l~~H~~~----------V~~l~~~~~~~~l~s~s~-Dg~v~iWd~~~ 223 (432)
......++++ -.-|.|.++-+... .........|.+. +....+.|++++|++... --.|.+|++..
T Consensus 97 d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d 176 (346)
T COG2706 97 DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD 176 (346)
T ss_pred CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc
Confidence 6666544433 45578999988542 2222233456666 899999999999998864 13589999997
Q ss_pred CceeEEEe----CCCceeeEE--ECCCEEEEE--cCCeEEEEEccCC--ceEeec---------CCcCCEEEEEEcCC-E
Q 014003 224 GQSASVIN----LGAEVGSLI--CEGPWVFVG--MPNVVKAWHIESS--AEFSLD---------GPVGEVYSMVVANE-M 283 (432)
Q Consensus 224 ~~~~~~~~----~~~~~~~~~--~~~~~l~~~--~~~~i~vwd~~~~--~~~~~~---------~~~~~v~~l~~~~~-~ 283 (432)
|+....-. .+.....+. ++++++.+- .+++|-+|..... +...++ .......++.++++ .
T Consensus 177 g~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr 256 (346)
T COG2706 177 GKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGR 256 (346)
T ss_pred CccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCC
Confidence 76443222 222233333 577766543 7899999988773 222111 12345567888888 4
Q ss_pred EEEEECC--CcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCC-CeEEEEECC--CCceEEEec-CC
Q 014003 284 LFAGAQD--GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMD-NTIRVWDLD--TLEAVMTLN-GH 355 (432)
Q Consensus 284 l~~g~~d--g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d-g~I~vwd~~--~~~~~~~~~-~~ 355 (432)
++.++.- ..|.+|.+...... .........+...-+.+.++ +++|+++..+ ..|.+|... +|++-.... ..
T Consensus 257 FLYasNRg~dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~ 335 (346)
T COG2706 257 FLYASNRGHDSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAV 335 (346)
T ss_pred EEEEecCCCCeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccC
Confidence 4444433 36777877665331 23333333344445566665 8888888765 467777654 555543332 22
Q ss_pred CCCcEEEEE
Q 014003 356 TDAPMSLLC 364 (432)
Q Consensus 356 ~~~v~~~~~ 364 (432)
....+|+.|
T Consensus 336 ~p~Pvcv~f 344 (346)
T COG2706 336 VPEPVCVKF 344 (346)
T ss_pred CCCcEEEEE
Confidence 333455544
No 320
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.79 E-value=0.0023 Score=56.46 Aligned_cols=195 Identities=10% Similarity=0.084 Sum_probs=102.9
Q ss_pred CCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCCCCeE
Q 014003 94 PSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFW 173 (432)
Q Consensus 94 ~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 173 (432)
.-++||||+..||.+...|+|++.|+.+......+... .........-...++.+... .-.|.. .+..-..+|.+
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~-~~~~d~~~Aiagl~Fl~~~~---s~~ws~-ELlvi~Y~G~L 121 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAM-SFPGDLSDAIAGLIFLEYKK---SAQWSY-ELLVINYRGQL 121 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccc-ccCCccccceeeeEeecccc---ccccce-eEEEEecccee
Confidence 56789999999999999999999998875433211111 00010000000011111110 112322 23333455666
Q ss_pred EEEeCC----CCcEEEEEEe---cccCcEEEEEecCCCCEEEEEeCCCc-----------EEEEeCCCCceeEEEeCCCc
Q 014003 174 HSWFCG----EGFTMLAKLE---GHKKAVSGIALPLRSDKLYSGSRDGT-----------VQLWDCHTGQSASVINLGAE 235 (432)
Q Consensus 174 ~vw~~~----~~~~~~~~l~---~H~~~V~~l~~~~~~~~l~s~s~Dg~-----------v~iWd~~~~~~~~~~~~~~~ 235 (432)
+-|-+. .+.+...++. .+...|.++.++|..++|+.||.... +..|.+-++.+-...
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~----- 196 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ----- 196 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE-----
Confidence 766652 2334444443 24789999999999888887765322 233333222211110
Q ss_pred eeeEEECCCEEEEEcCCeEEEEEccCCceEe-ecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCC
Q 014003 236 VGSLICEGPWVFVGMPNVVKAWHIESSAEFS-LDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNT 302 (432)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~-~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~ 302 (432)
+...+.-+.. ......+|.+-+..... .......|..|..+|| .|++...+|+|.+|++..-.
T Consensus 197 ---v~~~~~~~~~-~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 197 ---VTSSEDDITA-SSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred ---ccccCccccc-cccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 0000000000 00011223332222222 2345677899999998 99999999999999987743
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.005 Score=56.79 Aligned_cols=221 Identities=14% Similarity=0.111 Sum_probs=125.8
Q ss_pred ceEEeeccC-ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCC-CCEEEEEeCCCcEEEEeCCCCcee-EEE
Q 014003 154 NVCYHWLSG-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQSA-SVI 230 (432)
Q Consensus 154 ~~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~-~~~l~s~s~Dg~v~iWd~~~~~~~-~~~ 230 (432)
.+.+.+... .+..++.+.+|.|.|+++. ..+..+..| ..+++++|.-| .++++.|-..|.|.++|++..+-. ..+
T Consensus 198 dlafSp~~~GLl~~asl~nkiki~dlet~-~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~ 275 (463)
T KOG1645|consen 198 DLAFSPFNEGLLGLASLGNKIKIMDLETS-CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMEL 275 (463)
T ss_pred hhccCccccceeeeeccCceEEEEecccc-eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhh
Confidence 556666655 6888999999999999988 667778887 89999999765 467889999999999999764321 111
Q ss_pred eC---CCceeeEE--------ECCCEEEEEcCCeEEEEEccCCc----eEeecCCcCCEEEEEEcC--C-EEEEEECCC-
Q 014003 231 NL---GAEVGSLI--------CEGPWVFVGMPNVVKAWHIESSA----EFSLDGPVGEVYSMVVAN--E-MLFAGAQDG- 291 (432)
Q Consensus 231 ~~---~~~~~~~~--------~~~~~l~~~~~~~i~vwd~~~~~----~~~~~~~~~~v~~l~~~~--~-~l~~g~~dg- 291 (432)
.. -.++..+. ..+.+++ +..-.+..|++.... .+...+..+...++.+.+ + .+++.-.+.
T Consensus 276 ~a~~t~~pv~~i~~~~~n~~f~~gglLv-~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn 354 (463)
T KOG1645|consen 276 VANVTINPVHKIAPVQPNKIFTSGGLLV-FALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPN 354 (463)
T ss_pred hhhhccCcceeecccCccccccccceEE-eeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCCCC
Confidence 11 11222221 1223333 333334455543322 223334456666777766 3 333332211
Q ss_pred -----cEEE-EECCCCCCCccccceeeecc---------cc-CeEEEEEeCCE-EEEEeCCCeEEEEECCCCceEEEecC
Q 014003 292 -----NILV-WKGIPNTQNPFQLAALLKGH---------TR-PVTCLAVGGKR-LYSGSMDNTIRVWDLDTLEAVMTLNG 354 (432)
Q Consensus 292 -----~i~~-wd~~~~~~~~~~~~~~~~~h---------~~-~v~~l~~~~~~-l~sgs~dg~I~vwd~~~~~~~~~~~~ 354 (432)
.|.. -|..++ ......-..+ .. .+.. ..+.++ +..+.+.+.+.+||..+++.++++.-
T Consensus 355 ~p~~r~il~~~d~~dG----~pVc~~r~~~~Gs~~~kl~t~~ai~~-~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~ 429 (463)
T KOG1645|consen 355 FPQSRFILGRIDFRDG----FPVCGKRRTYFGSKQTKLSTTQAIRA-VEDNNYIVVVGDSTNELILQDPHSFEVVQTLAL 429 (463)
T ss_pred CccceeeeeeeccccC----ceeeeecccccCCcccccccccceec-cccccEEEEecCCcceeEEeccchhheeeeccc
Confidence 0111 011111 0111111111 11 1111 112233 44566678999999999999999974
Q ss_pred CCCCcEEEEEc---C-CEEEEEeCCCcEEEEEcC
Q 014003 355 HTDAPMSLLCW---D-QYLLSCSLDNTIKVWIMT 384 (432)
Q Consensus 355 ~~~~v~~~~~~---~-~~l~s~s~dg~i~iwd~~ 384 (432)
. .++..+.+. + .+|++ -.|..++||..+
T Consensus 430 ~-epv~Dicp~~~n~~syLa~-LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 430 S-EPVLDICPNDTNGSSYLAL-LTDDRVHIYKNE 461 (463)
T ss_pred C-cceeecceeecCCcchhhh-eecceEEEEecC
Confidence 4 778887766 3 35544 456678887654
No 322
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.76 E-value=0.00011 Score=43.85 Aligned_cols=38 Identities=39% Similarity=0.707 Sum_probs=34.7
Q ss_pred EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEe
Q 014003 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWD 220 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd 220 (432)
+++..+..|...|.+++|.++++.+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 55677889999999999999999999999999999996
No 323
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.75 E-value=0.036 Score=54.03 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=59.3
Q ss_pred ecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEE
Q 014003 267 LDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWD 342 (432)
Q Consensus 267 ~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd 342 (432)
.......+.+++++|+ .++.|+.||+|.+||...+. .......-..+.++|+ |..+++|+..|.+.+||
T Consensus 255 sipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~-------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 255 SIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV-------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred EEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe-------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence 3456778889999888 99999999999999987763 2222334556778886 88999999999999999
Q ss_pred CCCCceE
Q 014003 343 LDTLEAV 349 (432)
Q Consensus 343 ~~~~~~~ 349 (432)
+.-....
T Consensus 328 ~ALspi~ 334 (545)
T PF11768_consen 328 MALSPIK 334 (545)
T ss_pred eecCccc
Confidence 8754443
No 324
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.69 E-value=0.029 Score=52.65 Aligned_cols=207 Identities=14% Similarity=0.107 Sum_probs=126.4
Q ss_pred eEEEEeCCCCcEEEEEEec-ccCcEEEEE---ecCC----CCEEEEEeC----------CCcEEEEeCCCC-------ce
Q 014003 172 FWHSWFCGEGFTMLAKLEG-HKKAVSGIA---LPLR----SDKLYSGSR----------DGTVQLWDCHTG-------QS 226 (432)
Q Consensus 172 ~i~vw~~~~~~~~~~~l~~-H~~~V~~l~---~~~~----~~~l~s~s~----------Dg~v~iWd~~~~-------~~ 226 (432)
.|++.|..+. +.+..+.- ....+++++ +..+ ..+++.|.. .|.|.++++... +.
T Consensus 3 ~i~l~d~~~~-~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTTF-EVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTTS-SEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCCC-eEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4677777554 23333321 223344443 4332 467777643 288999999884 23
Q ss_pred eEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCc-eEe--ecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCC
Q 014003 227 ASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSA-EFS--LDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQ 303 (432)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~-~~~--~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~ 303 (432)
+.......++.++..-+..++++..+.|.+|++...+ ... .......+.++....+++++|.....+.++.......
T Consensus 82 i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp EEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE
T ss_pred EEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCC
Confidence 3445567888888876777999999999999999888 443 2233448889999999999999999999886554221
Q ss_pred CccccceeeeccccCeEEEEE--eCCEEEEEeCCCeEEEEECCC-------C--ceEEEecCC-CCCcEEE---EEcC--
Q 014003 304 NPFQLAALLKGHTRPVTCLAV--GGKRLYSGSMDNTIRVWDLDT-------L--EAVMTLNGH-TDAPMSL---LCWD-- 366 (432)
Q Consensus 304 ~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~vwd~~~-------~--~~~~~~~~~-~~~v~~~---~~~~-- 366 (432)
. +..+.. ......++++.+ +++.++.+..+|.+.++.... + +......-| ...|+++ ....
T Consensus 162 ~-l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~ 239 (321)
T PF03178_consen 162 K-LILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRS 239 (321)
T ss_dssp --EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--S
T ss_pred E-EEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecC
Confidence 0 122221 122445666666 466999999999999998762 2 222222222 2345555 2111
Q ss_pred --------CEEEEEeCCCcEEEE
Q 014003 367 --------QYLLSCSLDNTIKVW 381 (432)
Q Consensus 367 --------~~l~s~s~dg~i~iw 381 (432)
..++-++.+|.|.+.
T Consensus 240 ~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 240 GSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCCcccccceEEEEecCCEEEEE
Confidence 247888888888744
No 325
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.67 E-value=0.042 Score=50.07 Aligned_cols=211 Identities=13% Similarity=0.126 Sum_probs=119.1
Q ss_pred ceeeCCCCC-eEEEEeCCCCcEEEEEEecccCcEE--EEEecCCCCEEEEEeC-----CCcEEEEeCC-CCceeEEEeCC
Q 014003 163 NCVKGDECR-FWHSWFCGEGFTMLAKLEGHKKAVS--GIALPLRSDKLYSGSR-----DGTVQLWDCH-TGQSASVINLG 233 (432)
Q Consensus 163 ~~~~g~~d~-~i~vw~~~~~~~~~~~l~~H~~~V~--~l~~~~~~~~l~s~s~-----Dg~v~iWd~~-~~~~~~~~~~~ 233 (432)
.++.+-.-| ...+||..++ +....+....+.-. --.|++||++|++.-. .|.|-|||.. +-+.+.++...
T Consensus 19 avafaRRPG~~~~v~D~~~g-~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~ 97 (305)
T PF07433_consen 19 AVAFARRPGTFALVFDCRTG-QLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSH 97 (305)
T ss_pred EEEEEeCCCcEEEEEEcCCC-ceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCC
Confidence 344444444 4678888777 44444433222111 2469999999999743 5889999998 55666666533
Q ss_pred C---ceeeEEECCCEEEEEcCC-------------------eEEEEEccCCceEe---e--cCCcCCEEEEEEcCC-EEE
Q 014003 234 A---EVGSLICEGPWVFVGMPN-------------------VVKAWHIESSAEFS---L--DGPVGEVYSMVVANE-MLF 285 (432)
Q Consensus 234 ~---~~~~~~~~~~~l~~~~~~-------------------~i~vwd~~~~~~~~---~--~~~~~~v~~l~~~~~-~l~ 285 (432)
. .-..+.++++.|++++.| .+...|..+++.+. + ..+..+|..+++.++ .++
T Consensus 98 GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~ 177 (305)
T PF07433_consen 98 GIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVA 177 (305)
T ss_pred CcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEE
Confidence 2 222344677666554322 45556667776543 3 446667888888887 444
Q ss_pred EEEC-CCc-------EEEEECCCCCCCccc-cceeeeccccCeEEEEEe--CCEE-EEEeCCCeEEEEECCCCceEEEec
Q 014003 286 AGAQ-DGN-------ILVWKGIPNTQNPFQ-LAALLKGHTRPVTCLAVG--GKRL-YSGSMDNTIRVWDLDTLEAVMTLN 353 (432)
Q Consensus 286 ~g~~-dg~-------i~~wd~~~~~~~~~~-~~~~~~~h~~~v~~l~~~--~~~l-~sgs~dg~I~vwd~~~~~~~~~~~ 353 (432)
.|.+ .|. |-+++....-. ... .......-...+-+|+++ +..+ +|+=.-+.+.+||..+++.+....
T Consensus 178 ~a~Q~qg~~~~~~PLva~~~~g~~~~-~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 178 FAMQYQGDPGDAPPLVALHRRGGALR-LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred EEEecCCCCCccCCeEEEEcCCCcce-eccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence 4432 221 22332222100 000 000112234567889997 5555 455567899999999999987765
Q ss_pred CCCCCcEEEEEc-CCEEEEEeCCCcE
Q 014003 354 GHTDAPMSLLCW-DQYLLSCSLDNTI 378 (432)
Q Consensus 354 ~~~~~v~~~~~~-~~~l~s~s~dg~i 378 (432)
-. .+..++.. +.++++. ..|.+
T Consensus 257 l~--D~cGva~~~~~f~~ss-G~G~~ 279 (305)
T PF07433_consen 257 LP--DACGVAPTDDGFLVSS-GQGQL 279 (305)
T ss_pred cC--ceeeeeecCCceEEeC-CCccE
Confidence 33 34556665 3444444 44554
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.00098 Score=65.58 Aligned_cols=158 Identities=22% Similarity=0.290 Sum_probs=107.0
Q ss_pred ccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCC
Q 014003 191 HKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGP 270 (432)
Q Consensus 191 H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~ 270 (432)
|...|.--+++..+++++.|+.-|.+.+++-..++....- ..+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~------------------------------------~~~~ 75 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK------------------------------------NEGA 75 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhccc------------------------------------ccCc
Confidence 3344544456678999999999999999998766544321 1223
Q ss_pred cCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceee-eccccCeEEEEEe--CCEEEEEeCCCeEEEEECCC
Q 014003 271 VGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALL-KGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDT 345 (432)
Q Consensus 271 ~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~-~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~ 345 (432)
.+.+..+.++++ ++|+|+..|.|.++-+..........+... +.|...|++++|+ +..+++|...|+|.+-.+.+
T Consensus 76 ~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 76 TGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 445555666665 888899999999998877543222222222 3477899999998 88999999999999988877
Q ss_pred C----ceEEEecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCC
Q 014003 346 L----EAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 346 ~----~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~ 385 (432)
. ...+.+..-.+.|..+.....+|+.++.-.. .+++++.
T Consensus 156 ~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~-~Lc~tE~ 198 (726)
T KOG3621|consen 156 RQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRC-ILCQTEA 198 (726)
T ss_pred hhhhccccceeeccCcceEEeecccceehHhhhhhh-heeecch
Confidence 2 1234444456778888888666666554443 3455543
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.00032 Score=69.75 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=98.7
Q ss_pred cCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEE
Q 014003 271 VGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVM 350 (432)
Q Consensus 271 ~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~ 350 (432)
...+.+++++...++-|+.+|.|++++.... + .+...|... .-.|.++++|+.||+|.|..+-+.+...
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~------~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGN------P-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCc------c-ccccccccc----ccCCceEEEecCCCcEEEeeccCCccce
Confidence 3456778888889999999999999997654 1 333344443 3349999999999999999999888877
Q ss_pred EecCCCCCcEEEEEcC-------CEEEEEeCCCcEEEEEcCCCCcee--EEeeccCCcceEEEeeeeCCCCCcEEEEEeC
Q 014003 351 TLNGHTDAPMSLLCWD-------QYLLSCSLDNTIKVWIMTEEGNLE--VAYTHNEDHGVLALGGLNDPDGNPVLICSCN 421 (432)
Q Consensus 351 ~~~~~~~~v~~~~~~~-------~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~ 421 (432)
++. ...++.++++++ +.+++|+.-| +.++.-+--+... ......+.+..+.| .|. ++|=+++
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W------~g~-lIAWand 178 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW------RGN-LIAWAND 178 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe------cCc-EEEEecC
Confidence 776 345667777663 6799999988 7777543222222 23334444544444 466 7777766
Q ss_pred CCeEEEeeCCC
Q 014003 422 DDSVHLYELPS 432 (432)
Q Consensus 422 Dg~I~iwdl~s 432 (432)
+| |+|||+++
T Consensus 179 ~G-v~vyd~~~ 188 (846)
T KOG2066|consen 179 DG-VKVYDTPT 188 (846)
T ss_pred CC-cEEEeccc
Confidence 65 89999864
No 328
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.66 E-value=0.0044 Score=47.09 Aligned_cols=95 Identities=25% Similarity=0.240 Sum_probs=65.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEE
Q 014003 326 GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLAL 404 (432)
Q Consensus 326 ~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 404 (432)
.+.|++||.|..||+|+ ..+.+..+.. ...++++... +..++.+-.+|+|-+|+-. ..+........ +.++.+
T Consensus 15 ~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~-~~~~~~ 88 (111)
T PF14783_consen 15 ENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWRIKSKNQ-VTSMAF 88 (111)
T ss_pred cceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeeeeccCCC-eEEEEE
Confidence 47899999999999999 4467777764 4456666655 7899999999999999763 22333333333 223322
Q ss_pred eeeeCCCCCcEEEEEeCCCeEEE
Q 014003 405 GGLNDPDGNPVLICSCNDDSVHL 427 (432)
Q Consensus 405 ~~~~sp~g~~~l~sg~~Dg~I~i 427 (432)
. ....||.+-|++|-.+|.|-+
T Consensus 89 ~-D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 89 Y-DINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred E-cCCCCCceEEEEEecCCeEEe
Confidence 1 124566767999999998753
No 329
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.65 E-value=2.3e-05 Score=78.25 Aligned_cols=198 Identities=14% Similarity=0.171 Sum_probs=125.0
Q ss_pred CCceeeeecCCCceEEeeccC--ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCC--cEE
Q 014003 142 GSKRTLERTTPKNVCYHWLSG--NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDG--TVQ 217 (432)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg--~v~ 217 (432)
.+|+.+..+.....|..+.++ .++.|.-.|.|+++++.++ .......+|.++|+-+.-+.+|..+++.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG-~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG-SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc-cccccccccccccccccccCCcceeeeeccccCchHH
Confidence 456666666666677766655 8999999999999999998 66778899999999999888998877765543 467
Q ss_pred EEeCCC-CceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEee-----cCCcCCEEEEEEcCC-EEEEEECC
Q 014003 218 LWDCHT-GQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSL-----DGPVGEVYSMVVANE-MLFAGAQD 290 (432)
Q Consensus 218 iWd~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~-----~~~~~~v~~l~~~~~-~l~~g~~d 290 (432)
+|++.+ +.....+.....+.........+++.......+||++++..... .+....-....|+|. .|+. .|
T Consensus 1171 LW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--nd 1248 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--ND 1248 (1516)
T ss_pred HhccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eC
Confidence 899864 34444443332222111112223344557888999999875421 112222356677776 3322 34
Q ss_pred CcEEEEECCCCCCCccccceeeeccccCeE-EEEEeCCEEEEEeCCCeEEEEECCCCceEEEecC
Q 014003 291 GNILVWKGIPNTQNPFQLAALLKGHTRPVT-CLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNG 354 (432)
Q Consensus 291 g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 354 (432)
| .+||++.... ++.+...+..+. .+..+|+.++.-++ |||+++.+.++....
T Consensus 1249 G--vLWDvR~~~a-----Ih~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1249 G--VLWDVRIPEA-----IHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS 1301 (1516)
T ss_pred c--eeeeeccHHH-----HhhhhhheecccccccCCCceEEeech-----hhhhHHHHHHhcCcc
Confidence 4 4799987632 333332221111 12334777777654 899999888766543
No 330
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.63 E-value=0.0093 Score=57.24 Aligned_cols=204 Identities=15% Similarity=0.196 Sum_probs=105.3
Q ss_pred CcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEcc
Q 014003 181 GFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIE 260 (432)
Q Consensus 181 ~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~ 260 (432)
++.+...++...++|++++.+ |=.+++.|..+|.+.|.|++....+........
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~------------------------- 128 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRES------------------------- 128 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--------------------------
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeecccccc-------------------------
Confidence 456777777789999999996 666899999999999999987776665433220
Q ss_pred CCceEeecCCcCCEEEEEEc-----CC-----EEEEEECCCcEEEEECCCCCCCccc--cceeeeccccCeEEEEE-e--
Q 014003 261 SSAEFSLDGPVGEVYSMVVA-----NE-----MLFAGAQDGNILVWKGIPNTQNPFQ--LAALLKGHTRPVTCLAV-G-- 325 (432)
Q Consensus 261 ~~~~~~~~~~~~~v~~l~~~-----~~-----~l~~g~~dg~i~~wd~~~~~~~~~~--~~~~~~~h~~~v~~l~~-~-- 325 (432)
.........++++.|. .| .+++|+..|.+.+|.+.-.....+. .......+.++|..+.. +
T Consensus 129 ----~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~ 204 (395)
T PF08596_consen 129 ----FLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINAD 204 (395)
T ss_dssp -----T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETT
T ss_pred ----ccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECC
Confidence 0001122233344332 22 6788888888888877521111111 11111234555555442 1
Q ss_pred --------------------CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEE-------cCCEEEEEeCCCcE
Q 014003 326 --------------------GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLC-------WDQYLLSCSLDNTI 378 (432)
Q Consensus 326 --------------------~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~-------~~~~l~s~s~dg~i 378 (432)
-.-++....+..++|+..-+.+..++..........+.+ .+..|++-..+|.|
T Consensus 205 ~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i 284 (395)
T PF08596_consen 205 TGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSI 284 (395)
T ss_dssp T--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEE
T ss_pred CCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcE
Confidence 122444555778999999988876665522222222222 25678888999999
Q ss_pred EEEEcCCCCceeEEeeccC----CcceEEEeeeeCCCCCcEEEEE
Q 014003 379 KVWIMTEEGNLEVAYTHNE----DHGVLALGGLNDPDGNPVLICS 419 (432)
Q Consensus 379 ~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~sp~g~~~l~sg 419 (432)
+++.+..-+.+........ ......+ +++|+ +++-.
T Consensus 285 ~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi----s~~Gd-i~~~~ 324 (395)
T PF08596_consen 285 RIYSLPSLKEIKSVSLPPPLDSRRLSSSSI----SRNGD-IFYWT 324 (395)
T ss_dssp EEEETTT--EEEEEE-SS---HHHHTT-EE-----TTS--EEEE-
T ss_pred EEEECCCchHhhcccCCCccccccccccEE----CCCCC-EEEEe
Confidence 9999998877766554321 1222333 67888 44433
No 331
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.51 E-value=0.054 Score=52.85 Aligned_cols=221 Identities=12% Similarity=0.113 Sum_probs=108.6
Q ss_pred EEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEE-EccCCc-
Q 014003 186 AKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAW-HIESSA- 263 (432)
Q Consensus 186 ~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vw-d~~~~~- 263 (432)
+.+....-....+.++|+|++++. ..||.-.|+......... .. ..........+.+.+....+.|.++ +++...
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-~G-~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-FG-SGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-EE-E-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT
T ss_pred ccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-cC-ceeEEEEecCccEEEEECCCeEEEEEcCccccc
Confidence 344445566889999999999888 456778888744333322 21 1111222235666666677888885 443333
Q ss_pred -eEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEE
Q 014003 264 -EFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRV 340 (432)
Q Consensus 264 -~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~v 340 (432)
.+... ..+..+.. +.+|+..+.+ .|.+||..+++ .++.+... +|..+.|+ +++++..+.+ .+.|
T Consensus 103 k~i~~~---~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~-----~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~i 169 (443)
T PF04053_consen 103 KSIKLP---FSVEKIFG-GNLLGVKSSD-FICFYDWETGK-----LIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYI 169 (443)
T ss_dssp -----S---S-EEEEE--SSSEEEEETT-EEEEE-TTT-------EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEE
T ss_pred eEEcCC---cccceEEc-CcEEEEECCC-CEEEEEhhHcc-----eeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEE
Confidence 22222 23344433 4455555444 89999999874 46666532 38889998 7788888755 6777
Q ss_pred EECCCC-----------ceEEEecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeC
Q 014003 341 WDLDTL-----------EAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLND 409 (432)
Q Consensus 341 wd~~~~-----------~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~s 409 (432)
++.... .....+..-...|.+..|.++.++-.+.. .++-+ -. .....+.....+...+.. .
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl--~~-Ge~~~i~~ld~~~yllgy----~ 241 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKYL--VN-GETGIIAHLDKPLYLLGY----L 241 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEEE--ET-TEEEEEEE-SS--EEEEE----E
T ss_pred EEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEEE--Ec-CCcceEEEcCCceEEEEE----E
Confidence 765432 02333322256678888887655555444 66653 22 223333333333333333 4
Q ss_pred CCCCcEEEEEeCCCeEEEeeCC
Q 014003 410 PDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 410 p~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
|+.+ .+.....|+.|..+.++
T Consensus 242 ~~~~-~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 242 PKEN-RLYLIDRDGNVISYELD 262 (443)
T ss_dssp TTTT-EEEEE-TT--EEEEE--
T ss_pred ccCC-EEEEEECCCCEEEEEEC
Confidence 5444 67777888888887654
No 332
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.47 E-value=0.096 Score=49.17 Aligned_cols=167 Identities=14% Similarity=0.146 Sum_probs=107.2
Q ss_pred cEEEEeCCCCceeEEEeCCC--ceeeEE---EC------CCEEEEEc----------C-CeEEEEEccCC-----c--eE
Q 014003 215 TVQLWDCHTGQSASVINLGA--EVGSLI---CE------GPWVFVGM----------P-NVVKAWHIESS-----A--EF 265 (432)
Q Consensus 215 ~v~iWd~~~~~~~~~~~~~~--~~~~~~---~~------~~~l~~~~----------~-~~i~vwd~~~~-----~--~~ 265 (432)
.|++.|..+.+.+..+.... .+.++. .. ..++++|. . |.+.++++... + .+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57778877777776666433 233332 11 35666541 1 88999999884 2 22
Q ss_pred eecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCC
Q 014003 266 SLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDT 345 (432)
Q Consensus 266 ~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~ 345 (432)
......++|++++.-.+.++++. ++.|.+|++...+. +.....+.. ...++++...+++++.|.....+.++..+.
T Consensus 83 ~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~--l~~~~~~~~-~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 83 HSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKT--LLKKAFYDS-PFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSS--EEEEEEE-B-SSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCccc--chhhheecc-eEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 33455788999988888754444 58999999988761 223333332 347788888899999999988888875443
Q ss_pred -CceEEEecC--CCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 014003 346 -LEAVMTLNG--HTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 346 -~~~~~~~~~--~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~ 385 (432)
...+..+.. ....++++.+- ++.++.+..+|.+.++....
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 222333322 23346666665 46999999999999998863
No 333
>PHA02713 hypothetical protein; Provisional
Probab=97.46 E-value=0.017 Score=58.50 Aligned_cols=208 Identities=12% Similarity=0.125 Sum_probs=108.2
Q ss_pred cEEEEeCCCCceeEEEeCCCc---eeeEEECCCEEEEEc-C------CeEEEEEccCCceEeec---CCcCCEEEEEEcC
Q 014003 215 TVQLWDCHTGQSASVINLGAE---VGSLICEGPWVFVGM-P------NVVKAWHIESSAEFSLD---GPVGEVYSMVVAN 281 (432)
Q Consensus 215 ~v~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~-~------~~i~vwd~~~~~~~~~~---~~~~~v~~l~~~~ 281 (432)
.+..||..+++-...-....+ ......++.+.++|+ + +.+..||+.++.-.... ............+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g 352 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDD 352 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECC
Confidence 567788877654333222222 122334566555553 2 34777888776522211 1112223333444
Q ss_pred CEEEEEECCC-----cEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCC--------------------
Q 014003 282 EMLFAGAQDG-----NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDN-------------------- 336 (432)
Q Consensus 282 ~~l~~g~~dg-----~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg-------------------- 336 (432)
.+.+.|+.++ ++..||..+++ +..+..+.........+..++...+.|+.++
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~~---W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDDK---WKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCCe---EEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccccc
Confidence 4667777654 47889987764 4443333332223334455677778887653
Q ss_pred ---eEEEEECCCCce--EEEecCCCCCcEEEEEcCCEEEEEeCC------CcEEEEEcCC-CCce--eEEeeccCCcceE
Q 014003 337 ---TIRVWDLDTLEA--VMTLNGHTDAPMSLLCWDQYLLSCSLD------NTIKVWIMTE-EGNL--EVAYTHNEDHGVL 402 (432)
Q Consensus 337 ---~I~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~l~s~s~d------g~i~iwd~~~-~~~~--~~~~~~~~~~~~~ 402 (432)
.+..||.++.+- +..+.........+...+...+.|+.+ ..+..||..+ .+-. ..+..........
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~ 509 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI 509 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE
Confidence 477888776432 233322222223334446666777654 2467888876 3311 1111111111222
Q ss_pred EEeeeeCCCCCcEEEEEeCCC--eEEEeeCCC
Q 014003 403 ALGGLNDPDGNPVLICSCNDD--SVHLYELPS 432 (432)
Q Consensus 403 ~~~~~~sp~g~~~l~sg~~Dg--~I~iwdl~s 432 (432)
. -+|+ +.+.|+.|| .+..||..+
T Consensus 510 ~------~~~~-iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 510 L------HDNT-IMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred E------ECCE-EEEEeeecceeehhhcCccc
Confidence 2 2566 888999888 677777653
No 334
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.41 E-value=0.099 Score=47.78 Aligned_cols=216 Identities=16% Similarity=0.143 Sum_probs=121.2
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--ECCCEEEEEcCCeEEEEEccCCceEe-------------
Q 014003 202 LRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVFVGMPNVVKAWHIESSAEFS------------- 266 (432)
Q Consensus 202 ~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~vwd~~~~~~~~------------- 266 (432)
..++.|+.|..+| +.+++...............+..+. .+-+.+++-.|+.+.++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccc
Confidence 4678899999999 8999983333333333233355444 45566777778999999987654332
Q ss_pred --ecCCcCCEEEEE---EcC-CEEEEEECCCcEEEEECCCCCCCcc-ccceeeeccccCeEEEEEeCCEEEEEeCCCeEE
Q 014003 267 --LDGPVGEVYSMV---VAN-EMLFAGAQDGNILVWKGIPNTQNPF-QLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIR 339 (432)
Q Consensus 267 --~~~~~~~v~~l~---~~~-~~l~~g~~dg~i~~wd~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~ 339 (432)
.......+..++ ... ...++.....+|.+|........ + +..+++.- ...+.+++|.++.++.|..++ ..
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~-f~~~~ke~~l-p~~~~~i~~~~~~i~v~~~~~-f~ 160 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNS-FSKLLKEISL-PDPPSSIAFLGNKICVGTSKG-FY 160 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccc-ccceeEEEEc-CCCcEEEEEeCCEEEEEeCCc-eE
Confidence 112223344444 111 14444444559999988764221 2 34455543 477889999999999998665 77
Q ss_pred EEECCCCceEEEecCCC------------CCcEEEEEc-CCEEEEEeCCCcEEEEEcCCCCcee-EEeeccCCcceEEEe
Q 014003 340 VWDLDTLEAVMTLNGHT------------DAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLE-VAYTHNEDHGVLALG 405 (432)
Q Consensus 340 vwd~~~~~~~~~~~~~~------------~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~ 405 (432)
+.|+.++.....+.... .++..+... +.+|++- |..-.+.|.. ++..+ ....-......+++.
T Consensus 161 ~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i~W~~~p~~~~~~ 237 (275)
T PF00780_consen 161 LIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKN-GEPSRKSTIQWSSAPQSVAYS 237 (275)
T ss_pred EEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCC-CCcCcccEEEcCCchhEEEEE
Confidence 89999776654442111 223333444 4455432 3333334443 33322 222233333444442
Q ss_pred eeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 406 GLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 406 ~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
. . +|++-+. +.|.||++.+
T Consensus 238 ---~---p-yli~~~~-~~iEV~~~~~ 256 (275)
T PF00780_consen 238 ---S---P-YLIAFSS-NSIEVRSLET 256 (275)
T ss_pred ---C---C-EEEEECC-CEEEEEECcC
Confidence 2 2 5655544 5699999864
No 335
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.40 E-value=0.096 Score=48.41 Aligned_cols=230 Identities=13% Similarity=0.080 Sum_probs=133.2
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEe--c-ccC----cEEEEEecCCCCEEEEE--eCCCcEEEEeCCCCceeEEEeCC
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLE--G-HKK----AVSGIALPLRSDKLYSG--SRDGTVQLWDCHTGQSASVINLG 233 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~--~-H~~----~V~~l~~~~~~~~l~s~--s~Dg~v~iWd~~~~~~~~~~~~~ 233 (432)
...-|...-.|.+||..+- .+...+. . |.. ....++++.++++++.. +--.+|.|-|++.++.+.++...
T Consensus 59 R~~rG~RtDvv~~~D~~TL-~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P 137 (342)
T PF06433_consen 59 RGTRGERTDVVEIWDTQTL-SPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP 137 (342)
T ss_dssp ETTEEEEEEEEEEEETTTT-EEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT
T ss_pred ccccccceeEEEEEecCcC-cccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC
Confidence 3445566667999999876 4454332 1 111 12235677888877654 44567889999999998888876
Q ss_pred CceeeEE-ECCCEEEEEcCCeEEEEEccC-CceE-----eecCCcCCEE-EEEEc--CCEEEEEECCCcEEEEECCCCCC
Q 014003 234 AEVGSLI-CEGPWVFVGMPNVVKAWHIES-SAEF-----SLDGPVGEVY-SMVVA--NEMLFAGAQDGNILVWKGIPNTQ 303 (432)
Q Consensus 234 ~~~~~~~-~~~~~l~~~~~~~i~vwd~~~-~~~~-----~~~~~~~~v~-~l~~~--~~~l~~g~~dg~i~~wd~~~~~~ 303 (432)
.-....- .+..+...+.||.+....+.. ++.. .+.....++. .-.+. .+.++--+.+|.|+-.|+.....
T Consensus 138 GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~ 217 (342)
T PF06433_consen 138 GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA 217 (342)
T ss_dssp SEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE
T ss_pred CEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc
Confidence 5444333 245577778888888888873 3332 1111222222 22222 23666688999999999887653
Q ss_pred Cccccceeeecc----------ccCeEEEEEe--CCEEEEEeCC---C-------eEEEEECCCCceEEEecCCCCCcEE
Q 014003 304 NPFQLAALLKGH----------TRPVTCLAVG--GKRLYSGSMD---N-------TIRVWDLDTLEAVMTLNGHTDAPMS 361 (432)
Q Consensus 304 ~~~~~~~~~~~h----------~~~v~~l~~~--~~~l~sgs~d---g-------~I~vwd~~~~~~~~~~~~~~~~v~~ 361 (432)
. ....+..- .+.-.-++++ .+.|++.-.. | .|-++|+.+++.+..+.. ...+.+
T Consensus 218 ~---~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~S 293 (342)
T PF06433_consen 218 K---FGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDS 293 (342)
T ss_dssp E---EEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESE
T ss_pred c---ccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccce
Confidence 2 11111110 0112235555 4455443221 1 488889999999998873 234556
Q ss_pred EEEc---CCEEEEE-eCCCcEEEEEcCCCCceeEEeeccC
Q 014003 362 LLCW---DQYLLSC-SLDNTIKVWIMTEEGNLEVAYTHNE 397 (432)
Q Consensus 362 ~~~~---~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~ 397 (432)
+..+ ..+|++. ..++.+.+||..+++.+..+.....
T Consensus 294 i~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~ 333 (342)
T PF06433_consen 294 IAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE 333 (342)
T ss_dssp EEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred EEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence 6666 3466555 4689999999999988877765433
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.39 E-value=0.0068 Score=58.86 Aligned_cols=91 Identities=15% Similarity=0.176 Sum_probs=66.9
Q ss_pred EEEEeCCCC-cEEEEE-EecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEc
Q 014003 173 WHSWFCGEG-FTMLAK-LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGM 250 (432)
Q Consensus 173 i~vw~~~~~-~~~~~~-l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (432)
..+|++..+ .+.+.. --...+.|.+++++|+.+.|+.|..||+|.+||...+.....
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--------------------- 296 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--------------------- 296 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---------------------
Confidence 456666433 222221 125788999999999999999999999999999876632211
Q ss_pred CCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCC
Q 014003 251 PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNT 302 (432)
Q Consensus 251 ~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~ 302 (432)
...-....++|+|+ .+++|+..|.+.+||+.-+.
T Consensus 297 ------------------ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 297 ------------------KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ------------------eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 12234567899888 99999999999999987653
No 337
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.38 E-value=0.0081 Score=58.46 Aligned_cols=129 Identities=9% Similarity=-0.050 Sum_probs=76.7
Q ss_pred CCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeC-CC--cEEEEeCCCCceeEEEeCCCceeeEEECCCEE
Q 014003 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR-DG--TVQLWDCHTGQSASVINLGAEVGSLICEGPWV 246 (432)
Q Consensus 170 d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~-Dg--~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (432)
+..|.++++.++ . ...+..+......-.|+|||+.|+-.+. .+ .|.+.|+.+++..+..........+.++++.+
T Consensus 256 ~~~Iy~~dl~~g-~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~I 333 (419)
T PRK04043 256 QPDIYLYDTNTK-T-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYI 333 (419)
T ss_pred CcEEEEEECCCC-c-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEE
Confidence 456777787665 2 3334444443445679999987776653 33 58888888887755443332334566788877
Q ss_pred EEE-cC---------CeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEE-CCCc--EEEEECCCC
Q 014003 247 FVG-MP---------NVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA-QDGN--ILVWKGIPN 301 (432)
Q Consensus 247 ~~~-~~---------~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~-~dg~--i~~wd~~~~ 301 (432)
+.. .. ..|.+.|++++....+... .......|+|+ .++... ..+. +.+.++...
T Consensus 334 a~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 334 VYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 643 21 3678889888876555443 22335677877 343333 3333 555565543
No 338
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.29 E-value=0.15 Score=48.02 Aligned_cols=266 Identities=12% Similarity=0.030 Sum_probs=117.3
Q ss_pred eEEeeccCc-eeeCCCCCeEE--EEeCCCCcEEEEEEeccc-CcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEE
Q 014003 155 VCYHWLSGN-CVKGDECRFWH--SWFCGEGFTMLAKLEGHK-KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI 230 (432)
Q Consensus 155 ~~~~~~~~~-~~~g~~d~~i~--vw~~~~~~~~~~~l~~H~-~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~ 230 (432)
-|+...+.. +..+..|+.-. +-|++++ .+..|..+. .......++++++.++-.....+|+--|+++.+....+
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~--~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATG--EITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccC--EEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 344445553 34444455544 4455665 344454433 22334556788888776666678999999999887777
Q ss_pred eCCCceee----EE-ECCCEEEEE----c-------------------CCeEEEEEccCCceEeecCCcCCEEEEEEcCC
Q 014003 231 NLGAEVGS----LI-CEGPWVFVG----M-------------------PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE 282 (432)
Q Consensus 231 ~~~~~~~~----~~-~~~~~l~~~----~-------------------~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~ 282 (432)
........ +. .++..++.. . ...|...|+++++..........+..+.++|.
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 76655432 11 245554432 1 12566678888887766666777788888887
Q ss_pred ---EEEEEEC---CC-cEEEEECCCCCCCccccceeeecccc--CeEEEEE--eCCEEEE-E----eCCCeEEEEECCCC
Q 014003 283 ---MLFAGAQ---DG-NILVWKGIPNTQNPFQLAALLKGHTR--PVTCLAV--GGKRLYS-G----SMDNTIRVWDLDTL 346 (432)
Q Consensus 283 ---~l~~g~~---dg-~i~~wd~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~l~s-g----s~dg~I~vwd~~~~ 346 (432)
+|+-+-+ +. .-+||-+++.... .+++ ..+.. .+.-=-| +|..+.- + +.+..|.-+|+.++
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-~~~v---~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~ 274 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSN-VKKV---HRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG 274 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS----EES---S---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCc-ceee---ecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC
Confidence 4444443 22 2366766554322 1111 11211 1111112 2443322 1 23446777788877
Q ss_pred ceEEEecCCCCCcEEEEEc--CCEEEEEeCCC----------------cEEEEEcCCCCceeEEeeccCCc-------ce
Q 014003 347 EAVMTLNGHTDAPMSLLCW--DQYLLSCSLDN----------------TIKVWIMTEEGNLEVAYTHNEDH-------GV 401 (432)
Q Consensus 347 ~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg----------------~i~iwd~~~~~~~~~~~~~~~~~-------~~ 401 (432)
+....... ....-+..+ +++++-=+.|. -|+++++..+... .+..|.... ..
T Consensus 275 ~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~ 351 (386)
T PF14583_consen 275 ERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQV 351 (386)
T ss_dssp -EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE-------BTTBSST
T ss_pred CceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCcceeecCCCcc
Confidence 65432221 111222222 44444333332 4566777654432 222221100 00
Q ss_pred EEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 402 LALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 402 ~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
.--...|+|||+.+|..+...|...||=
T Consensus 352 ~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 352 THPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp T----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred CCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 0122344999999999999999888774
No 339
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.28 E-value=0.25 Score=49.72 Aligned_cols=81 Identities=14% Similarity=0.023 Sum_probs=53.3
Q ss_pred CeEEEEECCCCceEEEecCCCCCcEE-EEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCc
Q 014003 336 NTIRVWDLDTLEAVMTLNGHTDAPMS-LLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNP 414 (432)
Q Consensus 336 g~I~vwd~~~~~~~~~~~~~~~~v~~-~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~ 414 (432)
|.|.-+|+.+++.+.+.........+ +...+..++.++.||.++.+|.++++.+......... ....+ .|.-+|+.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~-~a~P~--ty~~~G~q 517 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGI-VGPPV--TYEQDGKQ 517 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCc-eecCE--EEEeCCEE
Confidence 57889999999998877643322222 3334678888888999999999999998877654322 11111 12346665
Q ss_pred EEEEE
Q 014003 415 VLICS 419 (432)
Q Consensus 415 ~l~sg 419 (432)
+++..
T Consensus 518 Yv~~~ 522 (527)
T TIGR03075 518 YVAVL 522 (527)
T ss_pred EEEEE
Confidence 55543
No 340
>PHA02713 hypothetical protein; Provisional
Probab=97.28 E-value=0.018 Score=58.40 Aligned_cols=182 Identities=8% Similarity=0.077 Sum_probs=102.0
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCceeEEEeCCC---ceeeEEECCCEEEEE-cC-----CeEEEEEccCCceEee
Q 014003 203 RSDKLYSGSRD------GTVQLWDCHTGQSASVINLGA---EVGSLICEGPWVFVG-MP-----NVVKAWHIESSAEFSL 267 (432)
Q Consensus 203 ~~~~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~-~~-----~~i~vwd~~~~~~~~~ 267 (432)
++...+.||.+ .++..||..+..-...-+... .......++.+.+.| .+ ..+..||+.++.=...
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 56677777754 347788887765332222211 122333566665554 32 3578899887642211
Q ss_pred ---cCCcCCEEEEEEcCCEEEEEECCC-----------------------cEEEEECCCCCCCccccceeeeccccCeEE
Q 014003 268 ---DGPVGEVYSMVVANEMLFAGAQDG-----------------------NILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (432)
Q Consensus 268 ---~~~~~~v~~l~~~~~~l~~g~~dg-----------------------~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 321 (432)
.........+...+.+.+.|+.++ .+..||..+++ +..+..+.........
T Consensus 383 ~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~---W~~v~~m~~~r~~~~~ 459 (557)
T PHA02713 383 PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI---WETLPNFWTGTIRPGV 459 (557)
T ss_pred CCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe---EeecCCCCcccccCcE
Confidence 111122223344444666676542 47778877764 4434433322222223
Q ss_pred EEEeCCEEEEEeCC------CeEEEEECCC---CceEEEecCCCCCcEEEEEcCCEEEEEeCCC--cEEEEEcCCCC
Q 014003 322 LAVGGKRLYSGSMD------NTIRVWDLDT---LEAVMTLNGHTDAPMSLLCWDQYLLSCSLDN--TIKVWIMTEEG 387 (432)
Q Consensus 322 l~~~~~~l~sgs~d------g~I~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg--~i~iwd~~~~~ 387 (432)
...+++..+.|+.+ ..+..||.++ .+.+..+.............+...++|+.|+ .+..||..+.+
T Consensus 460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCccccc
Confidence 45567777777754 2467899886 3445555544445555566688889999888 66777776654
No 341
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.28 E-value=0.11 Score=45.57 Aligned_cols=99 Identities=14% Similarity=0.096 Sum_probs=72.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--ECCCEEEEEcCCeEEEEEccCCceEeecCCcCCE---EEEE
Q 014003 204 SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEV---YSMV 278 (432)
Q Consensus 204 ~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v---~~l~ 278 (432)
..+++.||..+.+..-|..+|+.......+..+.+-. .....+.+...+.+++.+.+++.........+.| ..++
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d 102 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD 102 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence 4678888888999999999998887777776665433 3444445568999999999999655433333333 3455
Q ss_pred EcCCEEEEEECCCcEEEEECCCCC
Q 014003 279 VANEMLFAGAQDGNILVWKGIPNT 302 (432)
Q Consensus 279 ~~~~~l~~g~~dg~i~~wd~~~~~ 302 (432)
++...+..|+.|+..+..|.++..
T Consensus 103 ~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 103 FDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred CCCceEEEecCCCcEEEecccccc
Confidence 566699999999999999998864
No 342
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.27 E-value=0.11 Score=54.86 Aligned_cols=222 Identities=11% Similarity=-0.005 Sum_probs=115.6
Q ss_pred CceEEeeccC--ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEE
Q 014003 153 KNVCYHWLSG--NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI 230 (432)
Q Consensus 153 ~~~~~~~~~~--~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~ 230 (432)
+.+.+.+... .++.+...|.|.+-|.++.. ......-...|.+++|+||++.++-.+.++++.+-+- +-.++...
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~ 146 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEK 146 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhcc
Confidence 3444444433 55666666777777876652 2222234688999999999999999998888766432 12222211
Q ss_pred eCCCceeeEEECCCEEEEEcCCeEEEEEccCCceE-----------eecCCcCCEEEEEEcCC--EEEEE----ECC-Cc
Q 014003 231 NLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEF-----------SLDGPVGEVYSMVVANE--MLFAG----AQD-GN 292 (432)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~-----------~~~~~~~~v~~l~~~~~--~l~~g----~~d-g~ 292 (432)
+... .....+.++.+|....-.-+.-..++.. ........=+++.|-.+ ++++. -.+ ..
T Consensus 147 ~L~~---d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 147 PLDA---DDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred cccc---ccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 1100 0111233333433222112221111100 00011222345777766 55552 233 78
Q ss_pred EEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEE---eCCCeEEEEECCCC---ceEEEecCCCCCcEEEEE
Q 014003 293 ILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSG---SMDNTIRVWDLDTL---EAVMTLNGHTDAPMSLLC 364 (432)
Q Consensus 293 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sg---s~dg~I~vwd~~~~---~~~~~~~~~~~~v~~~~~ 364 (432)
|++||.. +..+ ....- ....-.+++|- |..+++- ++|+.|.+|..+.. +....+......+..+.|
T Consensus 224 irV~drE-g~Ln---s~se~--~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 224 IRVYDRE-GALN---STSEP--VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAW 297 (1265)
T ss_pred EEEeccc-chhh---cccCc--ccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeee
Confidence 9999977 3211 11111 11122356663 7777764 34668989985432 222223333344888999
Q ss_pred c--CCEEEE---EeCCCcEEEEEcCCC
Q 014003 365 W--DQYLLS---CSLDNTIKVWIMTEE 386 (432)
Q Consensus 365 ~--~~~l~s---~s~dg~i~iwd~~~~ 386 (432)
+ +..|+. ......|++|-+.+.
T Consensus 298 ns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 298 NSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cCCCCceeeeecccccceEEEEEecCe
Confidence 8 566666 444555999987654
No 343
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.27 E-value=0.26 Score=49.60 Aligned_cols=183 Identities=17% Similarity=0.135 Sum_probs=107.3
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEeccc-CcEE----------EEEecCCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHK-KAVS----------GIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV 229 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~-~~V~----------~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~ 229 (432)
.+.+..++.++.|.-.|..++ +.+-.+.... ..+. .+++ .+..++.++.|+.|...|.++|+.+-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TG-k~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTG-KELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCC-ceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 445666677788888888887 5555443211 1111 1122 245678888999999999999999877
Q ss_pred EeCCCc-----e--eeEEECCCEEEEEc------CCeEEEEEccCCceEee-c---CC----------------------
Q 014003 230 INLGAE-----V--GSLICEGPWVFVGM------PNVVKAWHIESSAEFSL-D---GP---------------------- 270 (432)
Q Consensus 230 ~~~~~~-----~--~~~~~~~~~l~~~~------~~~i~vwd~~~~~~~~~-~---~~---------------------- 270 (432)
...... + ..+..++.+++... ++.|..+|.++++.+-. . ..
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 664321 1 11223555444432 68899999999886521 1 00
Q ss_pred ------cCCE-EEEEEcCC--EEEEEECC-----C-----------cEEEEECCCCCCCccccceeeeccc--------c
Q 014003 271 ------VGEV-YSMVVANE--MLFAGAQD-----G-----------NILVWKGIPNTQNPFQLAALLKGHT--------R 317 (432)
Q Consensus 271 ------~~~v-~~l~~~~~--~l~~g~~d-----g-----------~i~~wd~~~~~~~~~~~~~~~~~h~--------~ 317 (432)
.+.+ ..+.++++ ++..+..+ + +|.-.|+++++.. -..+...|. .
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~---W~~Q~~~~D~wD~d~~~~ 302 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIK---WHYQTTPHDEWDYDGVNE 302 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEE---EeeeCCCCCCccccCCCC
Confidence 0111 13455654 55555422 2 6777788887631 111111221 1
Q ss_pred Ce-EEEEEeCC---EEEEEeCCCeEEEEECCCCceE
Q 014003 318 PV-TCLAVGGK---RLYSGSMDNTIRVWDLDTLEAV 349 (432)
Q Consensus 318 ~v-~~l~~~~~---~l~sgs~dg~I~vwd~~~~~~~ 349 (432)
++ ..+..+|+ .++.+..+|.+++.|.++|+++
T Consensus 303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 11 12223454 7889999999999999999986
No 344
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.15 E-value=0.0012 Score=56.45 Aligned_cols=102 Identities=17% Similarity=0.240 Sum_probs=73.8
Q ss_pred CCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCC-
Q 014003 281 NEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT- 356 (432)
Q Consensus 281 ~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~- 356 (432)
...+++|+.+|.|.+|....... .......-...|.++-.. +.+.++++.||.|+.|++.-.+.+.....|+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~----~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~ 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGA----HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF 145 (238)
T ss_pred CceEEeecccceEEEecCCccch----HHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC
Confidence 34899999999999998774321 122222334455555544 5689999999999999999999988888887
Q ss_pred CCcEEEEEc--CCEEEEE--eCCCcEEEEEcCCC
Q 014003 357 DAPMSLLCW--DQYLLSC--SLDNTIKVWIMTEE 386 (432)
Q Consensus 357 ~~v~~~~~~--~~~l~s~--s~dg~i~iwd~~~~ 386 (432)
.+...+... +.+++.+ |.|..++.|++...
T Consensus 146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred CCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 455444444 6788888 88888889988654
No 345
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.12 E-value=0.012 Score=60.66 Aligned_cols=133 Identities=13% Similarity=0.056 Sum_probs=89.4
Q ss_pred EECCCcEEEEECCCCCCCccccceeeeccccC-eEEEEEe-------CCEEEEEeCCCeEEEEECCCCc--eEEE-ec--
Q 014003 287 GAQDGNILVWKGIPNTQNPFQLAALLKGHTRP-VTCLAVG-------GKRLYSGSMDNTIRVWDLDTLE--AVMT-LN-- 353 (432)
Q Consensus 287 g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~-v~~l~~~-------~~~l~sgs~dg~I~vwd~~~~~--~~~~-~~-- 353 (432)
......|+-.|+..++ ++..++.|... |..++.+ ..-.+.|-.+..+..||.|-.. ++.. ..
T Consensus 500 ~~~~~~ly~mDLe~GK-----VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y 574 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGK-----VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY 574 (794)
T ss_pred CCCCCceEEEecCCCc-----EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc
Confidence 3456789999999875 57888877754 7777653 3456778889999999998632 3321 11
Q ss_pred CCCCCcEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 354 GHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 354 ~~~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
.......|++-. ..+||.|+.+|.||+||-...+....+.+...++..+.+ +.||+++|+++ +..|.++++
T Consensus 575 ~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDv----t~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 575 SSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDV----TADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred ccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEe----cCCCcEEEEee--cceEEEEEE
Confidence 122335566666 689999999999999995332222223345667777777 79999666655 456666653
No 346
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.078 Score=53.92 Aligned_cols=190 Identities=15% Similarity=0.179 Sum_probs=104.9
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCC-EEE
Q 014003 198 IALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGE-VYS 276 (432)
Q Consensus 198 l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~-v~~ 276 (432)
-+|++++..++.|+.||.|.+.+-. -+.+..++ .+... |..
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fq-------------------------------------a~~~siv~~ 70 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQ-------------------------------------AYEQSIVQF 70 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccc-ceeeehhe-------------------------------------ecchhhhhH
Confidence 3467888888899998877666532 12212222 22222 333
Q ss_pred EEEcCC--EEEEEECCC-----cEEEEECCCCCCCc-cccc---eee----eccccCeEEEEEe--CCEEEEEeCCCeEE
Q 014003 277 MVVANE--MLFAGAQDG-----NILVWKGIPNTQNP-FQLA---ALL----KGHTRPVTCLAVG--GKRLYSGSMDNTIR 339 (432)
Q Consensus 277 l~~~~~--~l~~g~~dg-----~i~~wd~~~~~~~~-~~~~---~~~----~~h~~~v~~l~~~--~~~l~sgs~dg~I~ 339 (432)
+..... .|++.++|+ .+++||+..-.... .+.+ +.. .....++.+++.+ -+.+|+|-.||.|.
T Consensus 71 L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~ 150 (933)
T KOG2114|consen 71 LYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVI 150 (933)
T ss_pred hhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEE
Confidence 333333 566655554 48899987653321 2222 111 1234567778886 67799999999999
Q ss_pred EEECC----CCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc-eeEEeeccCCcceEEEeeeeCCCC
Q 014003 340 VWDLD----TLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN-LEVAYTHNEDHGVLALGGLNDPDG 412 (432)
Q Consensus 340 vwd~~----~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~sp~g 412 (432)
.+.-+ .+....-......+|+.+.+. +..++-+..-..|.+|.+....+ ......+.....+.++ ++ +
T Consensus 151 ~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~----~~-~ 225 (933)
T KOG2114|consen 151 CYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSF----SD-G 225 (933)
T ss_pred EEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeec----CC-C
Confidence 98532 122222223345679999887 44433444456799999985442 2223344444444444 33 3
Q ss_pred CcEEEEEeCCCeEEEeeCC
Q 014003 413 NPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 413 ~~~l~sg~~Dg~I~iwdl~ 431 (432)
.+-+++++ +..|.+|+.+
T Consensus 226 t~qfIca~-~e~l~fY~sd 243 (933)
T KOG2114|consen 226 TYQFICAG-SEFLYFYDSD 243 (933)
T ss_pred CccEEEec-CceEEEEcCC
Confidence 32244443 3467777753
No 347
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.09 E-value=0.0002 Score=69.45 Aligned_cols=159 Identities=19% Similarity=0.227 Sum_probs=89.9
Q ss_pred cCCcCCEEEEEEcCC---EEEEEE----CCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeE
Q 014003 268 DGPVGEVYSMVVANE---MLFAGA----QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTI 338 (432)
Q Consensus 268 ~~~~~~v~~l~~~~~---~l~~g~----~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I 338 (432)
.++....++++|++- .||+|- .|..+.+||+.+.-..+++...-..+-.....+++|. .+.+.+|.....+
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~ 178 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSV 178 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchh
Confidence 455667778888764 666663 3567999999887322222111111123344466675 7788899988999
Q ss_pred EEEECCC-CceEEEecCCCCCcEEEEE-cCCEEEEEeCCCcEEEEE-cCCCCceeEEeeccCC-----cceEEEeeeeCC
Q 014003 339 RVWDLDT-LEAVMTLNGHTDAPMSLLC-WDQYLLSCSLDNTIKVWI-MTEEGNLEVAYTHNED-----HGVLALGGLNDP 410 (432)
Q Consensus 339 ~vwd~~~-~~~~~~~~~~~~~v~~~~~-~~~~l~s~s~dg~i~iwd-~~~~~~~~~~~~~~~~-----~~~~~~~~~~sp 410 (432)
+++|++. ......+....-.-..+.. .++|+++-. ||.|.+|| .++-+.+.....+... +..+++ .|
T Consensus 179 ~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ay----cP 253 (783)
T KOG1008|consen 179 HIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAY----CP 253 (783)
T ss_pred hhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEe----cc
Confidence 9999983 2222222211111123333 378888776 99999999 4443332222222221 333333 45
Q ss_pred CCCcEEEE-EeCCCeEEEeeCC
Q 014003 411 DGNPVLIC-SCNDDSVHLYELP 431 (432)
Q Consensus 411 ~g~~~l~s-g~~Dg~I~iwdl~ 431 (432)
....++++ .-+.++|+.||+.
T Consensus 254 trtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 254 TRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCcchhhhhccCcceEEEeccc
Confidence 43333444 4566889999874
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.09 E-value=0.14 Score=50.00 Aligned_cols=218 Identities=8% Similarity=-0.006 Sum_probs=109.5
Q ss_pred CCceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEe
Q 014003 152 PKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN 231 (432)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~ 231 (432)
+..+..+|.+..++. ..+|...+|..... +... .+.-...+|.+++ .+|+-...++|.|+.--+....+.+.
T Consensus 35 p~~ls~npngr~v~V-~g~geY~iyt~~~~-r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~ 106 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAW-RNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIK 106 (443)
T ss_dssp -SEEEE-TTSSEEEE-EETTEEEEEETTTT-EEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT----
T ss_pred CeeEEECCCCCEEEE-EcCCEEEEEEccCC-cccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEc
Confidence 456666676664444 55677777774333 2222 2334457788744 57777778899996433444444555
Q ss_pred CCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCC------CC
Q 014003 232 LGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPN------TQ 303 (432)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~------~~ 303 (432)
.+..+..+.. |.++....++.|.+||.++++.+....... |..+.|+++ +++..+ +..+.+++.... ..
T Consensus 107 ~~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t-~~~i~il~~~~~~~~~~~~~ 183 (443)
T PF04053_consen 107 LPFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVT-KDSIYILKYNLEAVAAIPEE 183 (443)
T ss_dssp -SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE--S-SEEEEEE-HHHHHHBTTT
T ss_pred CCcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEe-CCeEEEEEecchhccccccc
Confidence 5555555656 888888888899999999999886666544 899999988 555555 557777765433 00
Q ss_pred CccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcC--CEEEEEeCCCcEEEE
Q 014003 304 NPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD--QYLLSCSLDNTIKVW 381 (432)
Q Consensus 304 ~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~dg~i~iw 381 (432)
.-......+..-...|.+..|.++.++-.+.. .|+.+ ..|+. .++..-..++.-+...+ +.+.....|+.|..+
T Consensus 184 g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl--~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 184 GVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKYL--VNGET-GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp B-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEEE--ETTEE-EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred CchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEEE--EcCCc-ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEE
Confidence 00002222322256777888886655555444 66653 33332 22221223444444444 778888888888877
Q ss_pred EcC
Q 014003 382 IMT 384 (432)
Q Consensus 382 d~~ 384 (432)
.+.
T Consensus 260 ~ld 262 (443)
T PF04053_consen 260 ELD 262 (443)
T ss_dssp E--
T ss_pred EEC
Confidence 665
No 349
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.08 E-value=0.054 Score=54.87 Aligned_cols=215 Identities=14% Similarity=0.184 Sum_probs=119.0
Q ss_pred CCCCEEEEEeCC------CcEEEEeCCCCceeEEEeCCC--c-eeeEEECCCEEEEE-cC------CeEEEEEccCCceE
Q 014003 202 LRSDKLYSGSRD------GTVQLWDCHTGQSASVINLGA--E-VGSLICEGPWVFVG-MP------NVVKAWHIESSAEF 265 (432)
Q Consensus 202 ~~~~~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~--~-~~~~~~~~~~l~~~-~~------~~i~vwd~~~~~~~ 265 (432)
..+.+++.||.+ ..+..+|..+++-........ . ......++.+.++| .+ ..+..||...++=.
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 345566677766 367888888775444333322 1 22233455544444 45 35677888777621
Q ss_pred e---ecCCcCCEEEEEEcCCEEEEEECCCc-----EEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCC-
Q 014003 266 S---LDGPVGEVYSMVVANEMLFAGAQDGN-----ILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDN- 336 (432)
Q Consensus 266 ~---~~~~~~~v~~l~~~~~~l~~g~~dg~-----i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg- 336 (432)
. +.............+.+.++|+.||. +..||..+.+ +..+..+.......-...++|...++|+.++
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~---W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK---WTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCc---ccccCCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence 1 22222223333344448888998874 7788887765 5555544443444445566788888888654
Q ss_pred -----eEEEEECCCCce--EEEecCCCCCcEEEEEcCCEEEEEeCCCc-----EEEEEcCCCCceeEEeeccCCcceEEE
Q 014003 337 -----TIRVWDLDTLEA--VMTLNGHTDAPMSLLCWDQYLLSCSLDNT-----IKVWIMTEEGNLEVAYTHNEDHGVLAL 404 (432)
Q Consensus 337 -----~I~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~ 404 (432)
++..||..+.+- +..+..-..........+...+.|+.|+. |..||..+.+-.... .-........+
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~-~m~~~rs~~g~ 518 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA-PMTSPRSAVGV 518 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc-cCccccccccE
Confidence 567888776543 33333223333344445777788887763 677888776533321 11111111111
Q ss_pred eeeeCCCCCcEEEEEeCCCe
Q 014003 405 GGLNDPDGNPVLICSCNDDS 424 (432)
Q Consensus 405 ~~~~sp~g~~~l~sg~~Dg~ 424 (432)
. .-+++ +.+.|+.||.
T Consensus 519 ~---~~~~~-ly~vGG~~~~ 534 (571)
T KOG4441|consen 519 V---VLGGK-LYAVGGFDGN 534 (571)
T ss_pred E---EECCE-EEEEecccCc
Confidence 1 12455 7888887765
No 350
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.07 E-value=0.049 Score=41.48 Aligned_cols=86 Identities=22% Similarity=0.299 Sum_probs=62.6
Q ss_pred EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe-CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEE
Q 014003 283 MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMS 361 (432)
Q Consensus 283 ~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~ 361 (432)
.|++|+.|..|++|+-.. .+.++.. .+.|++|... +..++.+..+|+|-+|+- ...+...+.... +++
T Consensus 17 eLlvGs~D~~IRvf~~~e-------~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~-~~~ 85 (111)
T PF14783_consen 17 ELLVGSDDFEIRVFKGDE-------IVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQ-VTS 85 (111)
T ss_pred eEEEecCCcEEEEEeCCc-------EEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCC-eEE
Confidence 899999999999998443 4555553 4567777665 888999999999999984 445556654444 555
Q ss_pred EEEc--C----CEEEEEeCCCcEE
Q 014003 362 LLCW--D----QYLLSCSLDNTIK 379 (432)
Q Consensus 362 ~~~~--~----~~l~s~s~dg~i~ 379 (432)
+... + .-|++|=.+|.|-
T Consensus 86 ~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 86 MAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEcCCCCCceEEEEEecCCeEE
Confidence 5544 1 4788888888764
No 351
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.05 E-value=0.001 Score=56.85 Aligned_cols=139 Identities=14% Similarity=0.081 Sum_probs=83.7
Q ss_pred EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceE-EEecCCCCCcEE
Q 014003 283 MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAV-MTLNGHTDAPMS 361 (432)
Q Consensus 283 ~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~-~~~~~~~~~v~~ 361 (432)
.+...+.||.|.-++++..+.. .+.-.-|... ..+.--+..+++|+.+|.|.+|.....-.. .....-...+.+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s----~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~ 106 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKES----CRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDL 106 (238)
T ss_pred hhccccCCcccccchhhhhhhh----hhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhccccccee
Confidence 4556677888888877654321 1111112221 111112788999999999999997622111 111112223333
Q ss_pred EEEc---CCEEEEEeCCCcEEEEEcCCCCceeEEeecc-CCcceEEEeeeeCCCCCcEEEEE--eCCCeEEEeeCC
Q 014003 362 LLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN-EDHGVLALGGLNDPDGNPVLICS--CNDDSVHLYELP 431 (432)
Q Consensus 362 ~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~sp~g~~~l~sg--~~Dg~I~iwdl~ 431 (432)
.... +.+..+++.||.|+.|++...+.+...-.|. .+...... +..++ +++.+ |.|..++.|++.
T Consensus 107 ~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~iv----v~sd~-~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 107 GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIV----VGSDE-FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEE----ecCCc-eEEeeccccchhhhhcchh
Confidence 3333 4588999999999999999888777776666 33333333 23444 56666 778888888764
No 352
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.98 E-value=0.25 Score=44.17 Aligned_cols=199 Identities=13% Similarity=0.127 Sum_probs=102.3
Q ss_pred EEEecccCcEEEEEecCCCC-EEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCce
Q 014003 186 AKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAE 264 (432)
Q Consensus 186 ~~l~~H~~~V~~l~~~~~~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~ 264 (432)
+.+.+-...+.+|+|+|+.+ +++.....+.|...+.+ |+.++.+....
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g------------------------------ 63 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG------------------------------ 63 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS------------------------------
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC------------------------------
Confidence 45666677799999999755 55666677888888864 77777665321
Q ss_pred EeecCCcCCEEEEEEcCC-EEEEEE-CCCcEEEEECCCCCCC-ccccceee-----eccccCeEEEEEe--CCEEEEEeC
Q 014003 265 FSLDGPVGEVYSMVVANE-MLFAGA-QDGNILVWKGIPNTQN-PFQLAALL-----KGHTRPVTCLAVG--GKRLYSGSM 334 (432)
Q Consensus 265 ~~~~~~~~~v~~l~~~~~-~l~~g~-~dg~i~~wd~~~~~~~-~~~~~~~~-----~~h~~~v~~l~~~--~~~l~sgs~ 334 (432)
.+....+++..+ .++... .++.+.++++...... .......+ ..++..+-.++|+ ++.|+++-+
T Consensus 64 ------~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE 137 (248)
T PF06977_consen 64 ------FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE 137 (248)
T ss_dssp -------SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE
T ss_pred ------CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC
Confidence 344556666665 444444 4788888887443211 00001111 1344567889998 677777777
Q ss_pred CCeEEEEECCC---CceEEE--e------cCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceeEEeecc----
Q 014003 335 DNTIRVWDLDT---LEAVMT--L------NGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN---- 396 (432)
Q Consensus 335 dg~I~vwd~~~---~~~~~~--~------~~~~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---- 396 (432)
..-..+|.++. ...+.. . ......+.++.++ +++++....+..|.++| .+++.+..+.-..
T Consensus 138 ~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~g 216 (248)
T PF06977_consen 138 RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHG 216 (248)
T ss_dssp SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG
T ss_pred CCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccC
Confidence 76666666653 222111 1 1123346677777 56788888888898888 4555444433222
Q ss_pred -----CCcceEEEeeeeCCCCCcEEEEEeCCCeEEEe
Q 014003 397 -----EDHGVLALGGLNDPDGNPVLICSCNDDSVHLY 428 (432)
Q Consensus 397 -----~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iw 428 (432)
.....+++ +++|. +.+ .++-+..++|
T Consensus 217 l~~~~~QpEGIa~----d~~G~-LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 217 LSKDIPQPEGIAF----DPDGN-LYI-VSEPNLFYRF 247 (248)
T ss_dssp -SS---SEEEEEE-----TT---EEE-EETTTEEEEE
T ss_pred cccccCCccEEEE----CCCCC-EEE-EcCCceEEEe
Confidence 12345666 78998 333 4566666655
No 353
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.96 E-value=0.023 Score=58.64 Aligned_cols=96 Identities=17% Similarity=0.216 Sum_probs=68.2
Q ss_pred EEEEEECCCcEEEEECCCCCCCccccce----eeeccccCeEEEEEe-CCEEEEEeCCCeEEEEECCCCceEEEecCCCC
Q 014003 283 MLFAGAQDGNILVWKGIPNTQNPFQLAA----LLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD 357 (432)
Q Consensus 283 ~l~~g~~dg~i~~wd~~~~~~~~~~~~~----~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~ 357 (432)
..+.|-.+..+..||.+-... +++. .+ ......+|++-. ..+||+|+.+|.||+||--..+....+.+-..
T Consensus 544 ~tflGls~n~lfriDpR~~~~---k~v~~~~k~Y-~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~ 619 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGN---KLVDSQSKQY-SSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGD 619 (794)
T ss_pred ceEEEECCCceEEeccCCCCC---ceeecccccc-ccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCC
Confidence 667888899999999987542 1221 11 234457788777 78999999999999999543333445567788
Q ss_pred CcEEEEEc--CCEEEEEeCCCcEEEEEc
Q 014003 358 APMSLLCW--DQYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 358 ~v~~~~~~--~~~l~s~s~dg~i~iwd~ 383 (432)
+|..+... |++|++.+ +..+.+++.
T Consensus 620 pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 620 PIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 99988887 77776665 456777765
No 354
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.95 E-value=0.016 Score=58.55 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=60.7
Q ss_pred CceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 014003 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH 222 (432)
Q Consensus 153 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~ 222 (432)
...|.+|-.-.++.|..-|.+.+|..++. +.-.....|..+|..+.|+++|..|+|+..-|.|.+|...
T Consensus 63 tSLCWHpe~~vLa~gwe~g~~~v~~~~~~-e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 63 TSLCWHPEEFVLAQGWEMGVSDVQKTNTT-ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhccChHHHHHhhccccceeEEEecCCc-eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 46888888889999999999999999876 4444556799999999999999999999999999999875
No 355
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.0056 Score=63.30 Aligned_cols=110 Identities=19% Similarity=0.312 Sum_probs=84.1
Q ss_pred cCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCC
Q 014003 268 DGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDT 345 (432)
Q Consensus 268 ~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~ 345 (432)
+.....+.+.+.-...++.|+..|.+...|+..+- .+...-..-..+|++++|+ |..++.|-.+|.|.+||+..
T Consensus 86 e~~~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL----~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~ 161 (1206)
T KOG2079|consen 86 EDIAAGVISSAIVVVPIVIGTSHGHVLLSDMTGNL----GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR 161 (1206)
T ss_pred cCCCcceeeeeeeeeeEEEEcCchhhhhhhhhccc----chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC
Confidence 44455566666666689999999999999987752 2233334456799999997 99999999999999999999
Q ss_pred CceEEEecCCCCCcEEEEEc-----CCEEEEEeCCCcEEEEEc
Q 014003 346 LEAVMTLNGHTDAPMSLLCW-----DQYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 346 ~~~~~~~~~~~~~v~~~~~~-----~~~l~s~s~dg~i~iwd~ 383 (432)
++.++.+..|..+...+.+. +..++++..-|. +|.+
T Consensus 162 ~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 162 AKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 99999998888877666554 345777777775 5654
No 356
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.87 E-value=0.00035 Score=67.86 Aligned_cols=182 Identities=15% Similarity=0.211 Sum_probs=110.6
Q ss_pred ceeeCCCCCeEEEEeCCCCcE-EEEEEecccCcEEEEEecC-CCCEEEEEe----CCCcEEEEeCCCCce--eEEEeCCC
Q 014003 163 NCVKGDECRFWHSWFCGEGFT-MLAKLEGHKKAVSGIALPL-RSDKLYSGS----RDGTVQLWDCHTGQS--ASVINLGA 234 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~-~~~~l~~H~~~V~~l~~~~-~~~~l~s~s----~Dg~v~iWd~~~~~~--~~~~~~~~ 234 (432)
.++.|..+|.|-+-....... --....+|....++++|++ |.+.||.|- .|-.+.|||+.++-. ....
T Consensus 72 IlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~---- 147 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESP---- 147 (783)
T ss_pred hhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccc----
Confidence 567788889888877744322 2344567889999999977 556676662 356788999887632 1111
Q ss_pred ceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceee
Q 014003 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (432)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~ 312 (432)
.+.+ +......+++|..+ ++++|.....+.++|++..... ...+
T Consensus 148 -----------------------~fs~-------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~----~~sv 193 (783)
T KOG1008|consen 148 -----------------------LFSS-------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS----VSSV 193 (783)
T ss_pred -----------------------cccc-------ccccCccccccccCcchhhcccccchhhhhhhhhhhhh----hhhh
Confidence 1000 11222336666655 7888888889999999854321 1111
Q ss_pred eccccCeEEEEE---eCCEEEEEeCCCeEEEEE-CCCCc-eEEEecCCCC----CcEEEEEc---CCEEEEEeC-CCcEE
Q 014003 313 KGHTRPVTCLAV---GGKRLYSGSMDNTIRVWD-LDTLE-AVMTLNGHTD----APMSLLCW---DQYLLSCSL-DNTIK 379 (432)
Q Consensus 313 ~~h~~~v~~l~~---~~~~l~sgs~dg~I~vwd-~~~~~-~~~~~~~~~~----~v~~~~~~---~~~l~s~s~-dg~i~ 379 (432)
.+..+..+.+ .++++++-. ||.|.+|| .+.-+ ++..+..... .+..+++. ...+++.+. .++|+
T Consensus 194 --nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIr 270 (783)
T KOG1008|consen 194 --NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIR 270 (783)
T ss_pred --hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEE
Confidence 2223333444 478888776 99999999 33322 2333322222 37777777 345666655 46899
Q ss_pred EEEcCC
Q 014003 380 VWIMTE 385 (432)
Q Consensus 380 iwd~~~ 385 (432)
++|+..
T Consensus 271 lydi~~ 276 (783)
T KOG1008|consen 271 LYDICV 276 (783)
T ss_pred Eecccc
Confidence 998863
No 357
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.84 E-value=0.53 Score=45.77 Aligned_cols=196 Identities=15% Similarity=0.159 Sum_probs=104.6
Q ss_pred eEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCcee------e----EE-
Q 014003 172 FWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG------S----LI- 240 (432)
Q Consensus 172 ~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~------~----~~- 240 (432)
.|+||+.... ++..+.--.+.|.++.|+.+ ..|+....||+++++|+. |+. .+.....+. + ..
T Consensus 62 ~I~iys~sG~--ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSSGK--LLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCCCC--EeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCccccccccccc
Confidence 5999998664 34444333389999999875 556677799999999987 333 333222221 1 11
Q ss_pred ECCCEEEEEcCCeEEEEE-ccCCceE-eecCCcC------------CEEEEEEcCCEEEEEECCCcEEEEECCCCCCCcc
Q 014003 241 CEGPWVFVGMPNVVKAWH-IESSAEF-SLDGPVG------------EVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPF 306 (432)
Q Consensus 241 ~~~~~l~~~~~~~i~vwd-~~~~~~~-~~~~~~~------------~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~ 306 (432)
..+.+++...++.+.+.+ ....... ....... .+..+.......+....++.+.+.+-....
T Consensus 136 ~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~---- 211 (410)
T PF04841_consen 136 YKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK---- 211 (410)
T ss_pred CCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc----
Confidence 113344444444444432 2221111 0000000 011111111233444455556544432210
Q ss_pred ccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCC-CCCcEEEEEcCCEEEEEeCCCcEEEEE
Q 014003 307 QLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGH-TDAPMSLLCWDQYLLSCSLDNTIKVWI 382 (432)
Q Consensus 307 ~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s~s~dg~i~iwd 382 (432)
.+. ..+++..|+++ ++++|.-..+|.+.+.+..-.+....+... ......+.|.|+--+.......+.+..
T Consensus 212 ----~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~l~lvg 285 (410)
T PF04841_consen 212 ----QID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSWEDELLLVG 285 (410)
T ss_pred ----ccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEeCCEEEEEC
Confidence 111 23578888776 889999999999999987766676666544 345667777754222222244455554
No 358
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.83 E-value=0.13 Score=52.09 Aligned_cols=211 Identities=17% Similarity=0.223 Sum_probs=121.6
Q ss_pred CeEEEEeCCCC-cEEEEEEecccCcEEEEEecCCCCEEEEEeCC------CcEEEEeCCCCceeEEEeCCC---ceeeEE
Q 014003 171 RFWHSWFCGEG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD------GTVQLWDCHTGQSASVINLGA---EVGSLI 240 (432)
Q Consensus 171 ~~i~vw~~~~~-~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~---~~~~~~ 240 (432)
..+..||..++ ......+. +...-.+++.. ++...++||.| .++..||..+.+-....+... ......
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence 46888888766 44444444 23334444443 56788889888 357788888776443222222 122333
Q ss_pred ECCCEEEEE-cCC-----eEEEEEccCCceEe---ecCCcCCEEEEEEcCCEEEEEECCC------cEEEEECCCCCCCc
Q 014003 241 CEGPWVFVG-MPN-----VVKAWHIESSAEFS---LDGPVGEVYSMVVANEMLFAGAQDG------NILVWKGIPNTQNP 305 (432)
Q Consensus 241 ~~~~~l~~~-~~~-----~i~vwd~~~~~~~~---~~~~~~~v~~l~~~~~~l~~g~~dg------~i~~wd~~~~~~~~ 305 (432)
.++.+.++| .++ .+-.||..+.+=.. +...........+...+.++|+.++ ++..||..++.
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~--- 455 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT--- 455 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc---
Confidence 566665554 443 57778877765221 1222223333444444777777554 46788888775
Q ss_pred cccceeeeccccCeEEEEEeCCEEEEEeCCCe-----EEEEECCCCce--EEEecCCCCCcEEEEEcCCEEEEEeCCCc-
Q 014003 306 FQLAALLKGHTRPVTCLAVGGKRLYSGSMDNT-----IRVWDLDTLEA--VMTLNGHTDAPMSLLCWDQYLLSCSLDNT- 377 (432)
Q Consensus 306 ~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~-----I~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~l~s~s~dg~- 377 (432)
+.....+..-.........++...+.|+.|+. |..||.++.+- +..+......+-.....+...+.|+.||.
T Consensus 456 W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 456 WTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNN 535 (571)
T ss_pred eeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCcc
Confidence 44555444444444455567888888988873 77788876544 33333344444445555788888887764
Q ss_pred ----EEEEEcCCC
Q 014003 378 ----IKVWIMTEE 386 (432)
Q Consensus 378 ----i~iwd~~~~ 386 (432)
|..||..+.
T Consensus 536 ~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 536 NLNTVECYDPETD 548 (571)
T ss_pred ccceeEEcCCCCC
Confidence 555555443
No 359
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.81 E-value=0.31 Score=48.87 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=42.0
Q ss_pred CCEEEEEeCCCcEEEEEcCC----CCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 366 DQYLLSCSLDNTIKVWIMTE----EGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 366 ~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
|++... .++.|.+.|..+ ...+.....-......+.+ +|||+++++++..+.+|.|.|+++
T Consensus 288 GK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~v----SPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 288 GKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNT----SPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred CCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEE----CCCCCEEEEeCCCCCcEEEEEChh
Confidence 555554 367899999988 3233333333333345556 899998888888999999999863
No 360
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.73 E-value=0.48 Score=47.59 Aligned_cols=174 Identities=10% Similarity=0.021 Sum_probs=103.5
Q ss_pred CCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCC----CcEEEEeCCCCceeEEEeCCCceeeEEEC
Q 014003 167 GDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD----GTVQLWDCHTGQSASVINLGAEVGSLICE 242 (432)
Q Consensus 167 g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~D----g~v~iWd~~~~~~~~~~~~~~~~~~~~~~ 242 (432)
....+.+.+.|.++. +...++.-- +.-..++++++|+++++.+.+ .++..-+..+......+.... +.....+
T Consensus 211 ~ey~~~vSvID~etm-eV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-iea~vkd 287 (635)
T PRK02888 211 KKYRSLFTAVDAETM-EVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-IEEAVKA 287 (635)
T ss_pred cceeEEEEEEECccc-eEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-HHHhhhC
Confidence 334456777777654 444444321 234567888999999888642 233333333322222222211 1222346
Q ss_pred CCEEEEEcCCeEEEEEccC-----CceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCC---cc----c
Q 014003 243 GPWVFVGMPNVVKAWHIES-----SAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQN---PF----Q 307 (432)
Q Consensus 243 ~~~l~~~~~~~i~vwd~~~-----~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~---~~----~ 307 (432)
+++... .++.|.++|..+ ........-......+.++|| .++++..+.++.++|+.+.+.. .. .
T Consensus 288 GK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~ 366 (635)
T PRK02888 288 GKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA 366 (635)
T ss_pred CCEEEE-CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence 666665 467899999988 345555555667778899998 5566667999999999875420 00 1
Q ss_pred cceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCC
Q 014003 308 LAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDT 345 (432)
Q Consensus 308 ~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~ 345 (432)
+..+.+-...+ ...+|+ |+...+-..|..|..||+.+
T Consensus 367 vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 367 VVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 12222222222 234666 67777888899999999876
No 361
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.73 E-value=0.31 Score=42.23 Aligned_cols=194 Identities=12% Similarity=0.089 Sum_probs=108.4
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCC---CEEEEEeCCCcEEEEeCC--CCceeEEEe-CC-------Ccee
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRS---DKLYSGSRDGTVQLWDCH--TGQSASVIN-LG-------AEVG 237 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~---~~l~s~s~Dg~v~iWd~~--~~~~~~~~~-~~-------~~~~ 237 (432)
+.|+-||..+..-...++.+. ++.++.+.-.+ .+.+.++..-.|.-||-. .....+++. .. ..-.
T Consensus 37 g~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDg 114 (310)
T KOG4499|consen 37 GEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDG 114 (310)
T ss_pred CceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccC
Confidence 456668887754444445432 24455553333 344444444445568833 333333321 11 1112
Q ss_pred eEEECCCEEEEEc----------CCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEE--CCCCC
Q 014003 238 SLICEGPWVFVGM----------PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWK--GIPNT 302 (432)
Q Consensus 238 ~~~~~~~~l~~~~----------~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd--~~~~~ 302 (432)
.+.+++++..+.. .+.++.|-...... ......+.-..++|+.+ +.++-+.+-+|.-|| ..++.
T Consensus 115 kvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~-~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~ 193 (310)
T KOG4499|consen 115 KVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVE-LIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD 193 (310)
T ss_pred ccCCCCceeeeeeccccccccccccEEEEeccCCCce-eeehhccCCccccccccCcEEEEEccCceEEeeeecCCCccc
Confidence 3446777754431 24555554432221 12222333456778766 566677788887787 44443
Q ss_pred CCccccceeeec-----cc-cCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcCC
Q 014003 303 QNPFQLAALLKG-----HT-RPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQ 367 (432)
Q Consensus 303 ~~~~~~~~~~~~-----h~-~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 367 (432)
....+.+..++. +. ..-.++.-+|++.++.-..++|...|..+|+.+.++.-....+++++|-|.
T Consensus 194 ~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 194 LSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 322222222221 11 111233334888888888899999999999999999988889999999853
No 362
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.65 E-value=0.65 Score=48.67 Aligned_cols=188 Identities=14% Similarity=0.094 Sum_probs=114.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceee----------------------------EEECCCEEEEEcCCeEE
Q 014003 204 SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS----------------------------LICEGPWVFVGMPNVVK 255 (432)
Q Consensus 204 ~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~l~~~~~~~i~ 255 (432)
+..|+.++.++.|.-.|..+|+.+-.+........ ..+.+++++.+.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 56788888889999999999998888775433211 01233566667899999
Q ss_pred EEEccCCceEeecCCcCCE-----------------EEEEEcCCEEEEEEC----------CCcEEEEECCCCCCCcccc
Q 014003 256 AWHIESSAEFSLDGPVGEV-----------------YSMVVANEMLFAGAQ----------DGNILVWKGIPNTQNPFQL 308 (432)
Q Consensus 256 vwd~~~~~~~~~~~~~~~v-----------------~~l~~~~~~l~~g~~----------dg~i~~wd~~~~~~~~~~~ 308 (432)
..|.++++.....+..+.+ ..-.+..+.+++|+. +|.|+-+|..+++.. ++.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~-W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV-WAW 352 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe-eEE
Confidence 9999999876433332222 112233456777753 688999999998642 110
Q ss_pred c-------------eeeeccccCe-EEEEEe--CCEEEEE------------------eCCCeEEEEECCCCceEEEecC
Q 014003 309 A-------------ALLKGHTRPV-TCLAVG--GKRLYSG------------------SMDNTIRVWDLDTLEAVMTLNG 354 (432)
Q Consensus 309 ~-------------~~~~~h~~~v-~~l~~~--~~~l~sg------------------s~dg~I~vwd~~~~~~~~~~~~ 354 (432)
- ..+......+ ..+++| ...++.+ -..+.|.-.|.+||+....++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 0 0000000111 123333 2222221 1245788889999999888764
Q ss_pred -CCC---------C-cEEEEE-cC---CEEEEEeCCCcEEEEEcCCCCceeEE
Q 014003 355 -HTD---------A-PMSLLC-WD---QYLLSCSLDNTIKVWIMTEEGNLEVA 392 (432)
Q Consensus 355 -~~~---------~-v~~~~~-~~---~~l~s~s~dg~i~iwd~~~~~~~~~~ 392 (432)
|.+ + ...+.. .+ ..++.++.+|.+.+.|-++++.+...
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 221 1 122322 33 38999999999999999999876654
No 363
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.51 Score=42.42 Aligned_cols=203 Identities=16% Similarity=0.135 Sum_probs=128.1
Q ss_pred EEeccc-CcEEEEEecCCCCEEEEEeCCCcEEEEeCC---CCceeEEEeCCCceeeEEECCCEEEE-EcCCeEEEEEccC
Q 014003 187 KLEGHK-KAVSGIALPLRSDKLYSGSRDGTVQLWDCH---TGQSASVINLGAEVGSLICEGPWVFV-GMPNVVKAWHIES 261 (432)
Q Consensus 187 ~l~~H~-~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~---~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~vwd~~~ 261 (432)
.+-+|- +.|..+.....-.++..|-.=--.-+|+.. ....+..+....-...+...++++.. -.+.-+++.|+.+
T Consensus 36 ~~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~ 115 (370)
T COG5276 36 AYVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSEEYVYVADWSSGLRIVDIST 115 (370)
T ss_pred EEeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEecccEEEEEcCCCceEEEeccC
Confidence 344565 556666554332222222111123455554 22344444455555556656666654 4778899999987
Q ss_pred CceEee---cCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeE
Q 014003 262 SAEFSL---DGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTI 338 (432)
Q Consensus 262 ~~~~~~---~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I 338 (432)
...-.+ ....+--.++..+++++.++..|.-+.+.|+.+.+. .++...+.........++.+|++.+.+..|+-+
T Consensus 116 P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpss--P~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL 193 (370)
T COG5276 116 PDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSS--PQLAGRYALPGGDTHDVAISGNYAYVAWRDGGL 193 (370)
T ss_pred CCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCC--ceeeeeeccCCCCceeEEEecCeEEEEEeCCCe
Confidence 764333 233356788899999888888777788999988765 233344444444456788899999999999999
Q ss_pred EEEECCCCce---EEEecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEE
Q 014003 339 RVWDLDTLEA---VMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVA 392 (432)
Q Consensus 339 ~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 392 (432)
.+-|+..... +.... ....+.++..++++....-.+--+.+-|..+...+..+
T Consensus 194 ~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~ 249 (370)
T COG5276 194 TIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVF 249 (370)
T ss_pred EEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcccceEEEecCCCCCceEe
Confidence 9999876432 22222 22267888888777766666777888888777654443
No 364
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.58 E-value=0.46 Score=50.50 Aligned_cols=227 Identities=11% Similarity=0.030 Sum_probs=113.1
Q ss_pred cCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--ECCCEEEEE-cCCeEEEEEccCCceEeec
Q 014003 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVFVG-MPNVVKAWHIESSAEFSLD 268 (432)
Q Consensus 192 ~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~-~~~~i~vwd~~~~~~~~~~ 268 (432)
.+.|.++.|..+.+.++.+..+|.|.+-|.++......-.....+.++. ++..+++.. ..+++.+-+ .+-..+...
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhcc
Confidence 3689999999999999999999999999988876555544444444444 455555543 334443322 111111000
Q ss_pred CCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceee------eccccCeEEEEE--eCCEEEEEe-----C
Q 014003 269 GPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALL------KGHTRPVTCLAV--GGKRLYSGS-----M 334 (432)
Q Consensus 269 ~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~------~~h~~~v~~l~~--~~~~l~sgs-----~ 334 (432)
.. ...-.+. ..+.++....=.-+.-..++....+..... ..+. .=+++.| +|.++|+.. .
T Consensus 147 ~L-----~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 147 PL-----DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD-HKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred cc-----ccccccccccceecccccceeeecchhhhcccccccccccccchhhcc-CCceEEEccCCcEEEEEEEeccCC
Confidence 00 0000000 223333222222222112211111111111 1111 1235677 488888832 2
Q ss_pred CCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEe---CCCcEEEEEcCCCCc---eeEEeeccCCcceEEEee
Q 014003 335 DNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCS---LDNTIKVWIMTEEGN---LEVAYTHNEDHGVLALGG 406 (432)
Q Consensus 335 dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s---~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~ 406 (432)
...|+|||.+ |.+-.+-....+.-.+++|- |..+++-. +|+.|.+|.-+.-+. .........++..++|
T Consensus 221 ~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~W-- 297 (1265)
T KOG1920|consen 221 TRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAW-- 297 (1265)
T ss_pred ceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeee--
Confidence 3799999977 44433222222333445554 66766653 466788886543221 1111111222455555
Q ss_pred eeCCCCCcEEEE---EeCCCeEEEeeCC
Q 014003 407 LNDPDGNPVLIC---SCNDDSVHLYELP 431 (432)
Q Consensus 407 ~~sp~g~~~l~s---g~~Dg~I~iwdl~ 431 (432)
+.++. +|+. ......|++|-+.
T Consensus 298 --ns~sd-iLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 298 --NSNSD-ILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred --cCCCC-ceeeeecccccceEEEEEec
Confidence 77777 7766 4455559999764
No 365
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.55 E-value=0.61 Score=42.67 Aligned_cols=226 Identities=11% Similarity=0.080 Sum_probs=125.7
Q ss_pred CCCCCCC-CceecCCCCCCCcc-cccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceee-----
Q 014003 94 PSYNCPK-NNVRVSSGSEEGTT-HVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVK----- 166 (432)
Q Consensus 94 ~~~~~s~-~g~~las~~~Dg~i-~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 166 (432)
..++.+| ++..+|-+..-|+. .++|..++.... .......+.+.. -.+|++.+..+.+
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~-----------~~~a~~gRHFyG----Hg~fs~dG~~LytTEnd~ 72 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ-----------RLWAPPGRHFYG----HGVFSPDGRLLYTTENDY 72 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee-----------EEcCCCCCEEec----CEEEcCCCCEEEEecccc
Confidence 3455555 55556666655554 345554443210 001122233332 2455555555554
Q ss_pred CCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEE------------------eCCCcEEEEeCCCCceeE
Q 014003 167 GDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSG------------------SRDGTVQLWDCHTGQSAS 228 (432)
Q Consensus 167 g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~------------------s~Dg~v~iWd~~~~~~~~ 228 (432)
....|.|-|||...+++.+.++..|.-.-..+.+.|||+.|+.+ .++-.+..-|..+|+.+.
T Consensus 73 ~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~ 152 (305)
T PF07433_consen 73 ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE 152 (305)
T ss_pred CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee
Confidence 34567899999998889999999888888889999999877766 223345566777787777
Q ss_pred EEeCCC-----ceeeEE--ECCCEEEEE-cCC-------eEEEEEccCCc-eEe-----ecCCcCCEEEEEEcCC--EE-
Q 014003 229 VINLGA-----EVGSLI--CEGPWVFVG-MPN-------VVKAWHIESSA-EFS-----LDGPVGEVYSMVVANE--ML- 284 (432)
Q Consensus 229 ~~~~~~-----~~~~~~--~~~~~l~~~-~~~-------~i~vwd~~~~~-~~~-----~~~~~~~v~~l~~~~~--~l- 284 (432)
...... .+..+. .++..+++. ..+ .+-+++....- .+. ......-+-+++++.+ .+
T Consensus 153 q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia 232 (305)
T PF07433_consen 153 QVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIA 232 (305)
T ss_pred eeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEE
Confidence 755432 222222 344444443 111 23333322211 111 1234467889999887 44
Q ss_pred EEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe-CCEEEEEeCCCeEEEEE
Q 014003 285 FAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWD 342 (432)
Q Consensus 285 ~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~vwd 342 (432)
+++-..+.+.+||..++.. +.... -..+..++.. +.++++ +-.|.+...+
T Consensus 233 ~tsPrGg~~~~~d~~tg~~-----~~~~~--l~D~cGva~~~~~f~~s-sG~G~~~~~~ 283 (305)
T PF07433_consen 233 VTSPRGGRVAVWDAATGRL-----LGSVP--LPDACGVAPTDDGFLVS-SGQGQLIRLS 283 (305)
T ss_pred EECCCCCEEEEEECCCCCE-----eeccc--cCceeeeeecCCceEEe-CCCccEEEcc
Confidence 5555678899999988752 22221 2234455554 444444 4445544333
No 366
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.52 E-value=0.0077 Score=35.33 Aligned_cols=35 Identities=43% Similarity=0.557 Sum_probs=18.3
Q ss_pred eEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEE
Q 014003 348 AVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWI 382 (432)
Q Consensus 348 ~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd 382 (432)
++..+..|...+.++.+. +.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 344444455555555554 34555555555555553
No 367
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.016 Score=56.72 Aligned_cols=73 Identities=15% Similarity=0.080 Sum_probs=61.3
Q ss_pred eEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEE-EEEecCCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 014003 155 VCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVS-GIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV 229 (432)
Q Consensus 155 ~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~-~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~ 229 (432)
+-..|.-+.+|.+..+|.+-+..++ .+.+.++.-|...++ +++|.|||++||.|-.||+|++-|++++..+..
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 3344455578888889988888887 366888887888887 999999999999999999999999999987776
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.22 Score=48.13 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=90.0
Q ss_pred CCCEEEEE--cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---------EEEEEECCCcEEEEECCCCCCCccccce
Q 014003 242 EGPWVFVG--MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---------MLFAGAQDGNILVWKGIPNTQNPFQLAA 310 (432)
Q Consensus 242 ~~~~l~~~--~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---------~l~~g~~dg~i~~wd~~~~~~~~~~~~~ 310 (432)
+..++... ....++-.|++.++.+..-.....|.-+.+.|+ .-++|-.+..|.-||.+-.... .+.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~ 420 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLA 420 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eee
Confidence 44455443 556788889999987754333333555555554 4567889999999999865431 222
Q ss_pred eeeccc----cCeEEEEEe-CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEc
Q 014003 311 LLKGHT----RPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 311 ~~~~h~----~~v~~l~~~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~ 383 (432)
..++|. ....|++-. ..++++||.+|.||+||.-..+....+.+-..+|.-+... |++|++.+ +..+.+.++
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 223332 234455554 7799999999999999974333445567777788777665 67666554 566666665
Q ss_pred C
Q 014003 384 T 384 (432)
Q Consensus 384 ~ 384 (432)
.
T Consensus 500 ~ 500 (644)
T KOG2395|consen 500 L 500 (644)
T ss_pred e
Confidence 4
No 369
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.31 E-value=1.1 Score=43.71 Aligned_cols=166 Identities=12% Similarity=0.035 Sum_probs=81.8
Q ss_pred eEEEEEccCCceEeecCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceee---eccccCeEEEEEeCCE
Q 014003 253 VVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALL---KGHTRPVTCLAVGGKR 328 (432)
Q Consensus 253 ~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~ 328 (432)
.|.+|+..........-..+.+.++.|..+ .|++-..||.+++||+.... ++...... .-....+....+.++-
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccCCCC
Confidence 366666655544333322389999999888 88899999999999987442 11111111 1111222222332233
Q ss_pred EEEEeCCCeEEEEECCCCc-eEEEe---cCCC-------CC--cEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeec
Q 014003 329 LYSGSMDNTIRVWDLDTLE-AVMTL---NGHT-------DA--PMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTH 395 (432)
Q Consensus 329 l~sgs~dg~I~vwd~~~~~-~~~~~---~~~~-------~~--v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 395 (432)
++.-..++.+.+.+--... ....+ .... .. +..+.......+....++.+.+.+-...+. ...
T Consensus 140 ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~ 215 (410)
T PF04841_consen 140 IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ----IDS 215 (410)
T ss_pred EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc----ccC
Confidence 4444455555555432211 11111 1100 00 111111133344444445555333322111 111
Q ss_pred cCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 396 NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 396 ~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
.+++..+++ ||+|+ ++|.-..+|.+.|..
T Consensus 216 ~~~i~~iav----Spng~-~iAl~t~~g~l~v~s 244 (410)
T PF04841_consen 216 DGPIIKIAV----SPNGK-FIALFTDSGNLWVVS 244 (410)
T ss_pred CCCeEEEEE----CCCCC-EEEEEECCCCEEEEE
Confidence 234555555 89999 788888889887765
No 370
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=0.03 Score=58.23 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=82.0
Q ss_pred cCeEEEEEeCCEEEEEeCCCeEEEEECCCC-ceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEe
Q 014003 317 RPVTCLAVGGKRLYSGSMDNTIRVWDLDTL-EAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 317 ~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (432)
..+.+.+.-+..++.|++.|.+...|+... .+...-..-.++|.+++++ |..++.|-.+|.|.+||+..++.+..+.
T Consensus 90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~ 169 (1206)
T KOG2079|consen 90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT 169 (1206)
T ss_pred cceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence 344555555778999999999999998753 2223333445689999998 7899999999999999999999999998
Q ss_pred eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 394 THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 394 ~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
.+..+...+.+.... .++. .++++...|. +|.
T Consensus 170 e~~ap~t~vi~v~~t-~~nS-~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 170 EHGAPVTGVIFVGRT-SQNS-KLLTSDTGGS--FWK 201 (1206)
T ss_pred ecCCccceEEEEEEe-CCCc-EEEEccCCCc--eEE
Confidence 888887776654443 4455 6888877776 554
No 371
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.19 E-value=0.88 Score=40.73 Aligned_cols=165 Identities=11% Similarity=0.029 Sum_probs=107.0
Q ss_pred EEEEEEec-ccCcEEEEEecCCCCEEEEEeCCC--cEEEEeCCCCceeEEEeCCCce--eeEE-ECCCEEEEE-cCCeEE
Q 014003 183 TMLAKLEG-HKKAVSGIALPLRSDKLYSGSRDG--TVQLWDCHTGQSASVINLGAEV--GSLI-CEGPWVFVG-MPNVVK 255 (432)
Q Consensus 183 ~~~~~l~~-H~~~V~~l~~~~~~~~l~s~s~Dg--~v~iWd~~~~~~~~~~~~~~~~--~~~~-~~~~~l~~~-~~~~i~ 255 (432)
+.+.++.. ...-...+.|..++.++-+.+.-| .|+.+|+.+++........... ..+. .++.+.... .++...
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEE
Confidence 44555432 234456788877888888888877 7999999999998888876543 2333 344444444 788999
Q ss_pred EEEccCCceEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeee--cccc---CeEEEEEe-CCEE
Q 014003 256 AWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLK--GHTR---PVTCLAVG-GKRL 329 (432)
Q Consensus 256 vwd~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~--~h~~---~v~~l~~~-~~~l 329 (432)
+||..+-+........++=+.++.+.+.|+.......|+.+|..+-+ ....+. .... .+.-|.+- |...
T Consensus 114 ~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~-----~~~~i~V~~~g~pv~~LNELE~i~G~Iy 188 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFK-----EVRTIQVTDNGRPVSNLNELEYINGKIY 188 (264)
T ss_dssp EEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-S-----EEEEEE-EETTEE---EEEEEEETTEEE
T ss_pred EEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccc-----eEEEEEEEECCEECCCcEeEEEEcCEEE
Confidence 99999888776555567778888888888888888899999977643 233322 1222 34445554 5555
Q ss_pred EEEeCCCeEEEEECCCCceEEEe
Q 014003 330 YSGSMDNTIRVWDLDTLEAVMTL 352 (432)
Q Consensus 330 ~sgs~dg~I~vwd~~~~~~~~~~ 352 (432)
|=-=....|...|..+|+++..+
T Consensus 189 ANVW~td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp EEETTSSEEEEEETTT-BEEEEE
T ss_pred EEeCCCCeEEEEeCCCCeEEEEE
Confidence 55666778999999999998766
No 372
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.18 E-value=0.02 Score=36.41 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=29.6
Q ss_pred cCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 014003 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ 225 (432)
Q Consensus 192 ~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~ 225 (432)
...|..++|+|..++||.++.||.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 467999999999999999999999999998 454
No 373
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.98 E-value=0.17 Score=48.66 Aligned_cols=80 Identities=14% Similarity=0.170 Sum_probs=53.7
Q ss_pred ccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc----CC-----------------EEE
Q 014003 314 GHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW----DQ-----------------YLL 370 (432)
Q Consensus 314 ~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~-----------------~l~ 370 (432)
.....+.++..+ +++.++...=|.|.++|+.++..++.++|-.+.-.....- .+ +++
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 333445666665 7777777777999999999999988888776643222111 11 233
Q ss_pred EEeCCCcEEEEEcCCCCceeEEe
Q 014003 371 SCSLDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 371 s~s~dg~i~iwd~~~~~~~~~~~ 393 (432)
-+-.-|.|.||.++++..+..+.
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEE
Confidence 44567889999998887765554
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.97 E-value=1.3 Score=40.97 Aligned_cols=194 Identities=13% Similarity=0.024 Sum_probs=109.1
Q ss_pred eCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC---c-----ee
Q 014003 166 KGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA---E-----VG 237 (432)
Q Consensus 166 ~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~---~-----~~ 237 (432)
+.-..+.|+-|+..++...... +.+.+.++..-..+..|+++.. -+.+++.+++.....+.... + -.
T Consensus 42 ~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~ 116 (307)
T COG3386 42 VDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDG 116 (307)
T ss_pred EeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCce
Confidence 3445577888888766333332 2333444444344445555543 36777876666533332111 1 12
Q ss_pred eEEECCCEEEEEcC------------CeEEEEEccCCceEe-ecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCC-
Q 014003 238 SLICEGPWVFVGMP------------NVVKAWHIESSAEFS-LDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIP- 300 (432)
Q Consensus 238 ~~~~~~~~l~~~~~------------~~i~vwd~~~~~~~~-~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~- 300 (432)
.+.+++.+.++... +.++.++. .+.... ...+...-+.++|+|+ ++++=+..+.|..|++..
T Consensus 117 ~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~ 195 (307)
T COG3386 117 VVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPA 195 (307)
T ss_pred eEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcc
Confidence 23356666665433 23444444 344433 3444666688999998 445555568898888763
Q ss_pred -CCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCC-eEEEEECCCCceEEEecCCCCCcEEEEEcC
Q 014003 301 -NTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN-TIRVWDLDTLEAVMTLNGHTDAPMSLLCWD 366 (432)
Q Consensus 301 -~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg-~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 366 (432)
+...............+..-.++.+ |++-+++-.+| .|.+|+.+ ++++..+.-....+.+++|-|
T Consensus 196 ~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 196 TGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred cCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 1111011112222233444455665 66665555454 99999998 999999987777788888875
No 375
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.053 Score=53.20 Aligned_cols=90 Identities=17% Similarity=0.063 Sum_probs=69.6
Q ss_pred CcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeE-EEEEe--CCEEEEEeCCCeEEEEECC
Q 014003 270 PVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT-CLAVG--GKRLYSGSMDNTIRVWDLD 344 (432)
Q Consensus 270 ~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~-~l~~~--~~~l~sgs~dg~I~vwd~~ 344 (432)
....+.-+.|+|. ++|.+..+|.|.+..++- +.+..+.-|...++ +++|. |+.+|+|-.||+|++.|++
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~------qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLNW------QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEecc------ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 3456778889988 899999999999998773 34667776777777 99996 9999999999999999999
Q ss_pred CCceEEEecC-CCCCcEEEEEc
Q 014003 345 TLEAVMTLNG-HTDAPMSLLCW 365 (432)
Q Consensus 345 ~~~~~~~~~~-~~~~v~~~~~~ 365 (432)
++..+..+.. -...|.+..|.
T Consensus 93 ~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 93 KGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred CCCceeccccccccchheeecc
Confidence 9988877432 23344444443
No 376
>PHA03098 kelch-like protein; Provisional
Probab=95.85 E-value=0.64 Score=47.09 Aligned_cols=147 Identities=12% Similarity=0.104 Sum_probs=71.3
Q ss_pred EEcCCEEEEEECC-----CcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCC------CeEEEEECCCC
Q 014003 278 VVANEMLFAGAQD-----GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD------NTIRVWDLDTL 346 (432)
Q Consensus 278 ~~~~~~l~~g~~d-----g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~d------g~I~vwd~~~~ 346 (432)
...+.+++.|+.+ ..+..||..+++ +.....+............+++.++.|+.+ ..+..||..+.
T Consensus 340 ~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 340 VFNNRIYVIGGIYNSISLNTVESWKPGESK---WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred EECCEEEEEeCCCCCEecceEEEEcCCCCc---eeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 3333366666655 347778877654 333322222222222334457777777632 46889998764
Q ss_pred ce--EEEecCCCCCcEEEEEcCCEEEEEeCC--------CcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEE
Q 014003 347 EA--VMTLNGHTDAPMSLLCWDQYLLSCSLD--------NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVL 416 (432)
Q Consensus 347 ~~--~~~~~~~~~~v~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l 416 (432)
+- +..+.........+...+..++.|+.+ ..+.+||..+.+-.... ....+....... ..+++ ++
T Consensus 417 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~---~~~~~-iy 491 (534)
T PHA03098 417 KWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS-SLNFPRINASLC---IFNNK-IY 491 (534)
T ss_pred eeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC-CCCcccccceEE---EECCE-EE
Confidence 32 222221111222333345666666543 23788888765422211 111111111111 12566 77
Q ss_pred EEEeCC-----CeEEEeeCCC
Q 014003 417 ICSCND-----DSVHLYELPS 432 (432)
Q Consensus 417 ~sg~~D-----g~I~iwdl~s 432 (432)
+.|+.+ +.|.+||..+
T Consensus 492 v~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 492 VVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred EEcCCcCCcccceeEEEeCCC
Confidence 777654 4688888753
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.84 E-value=1.5 Score=40.59 Aligned_cols=212 Identities=17% Similarity=0.172 Sum_probs=113.7
Q ss_pred EecCCCC-EEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE-E-CCCEEEEEcCCeEEEEEccCCce-Eeec-----C
Q 014003 199 ALPLRSD-KLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI-C-EGPWVFVGMPNVVKAWHIESSAE-FSLD-----G 269 (432)
Q Consensus 199 ~~~~~~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~~~~~i~vwd~~~~~~-~~~~-----~ 269 (432)
.|.++.. ++.+--..+.|.-||..+++.. .+.......+.. . .+..|+++ +..+.+++.+++.. ..+. .
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d~~g~Lv~~-~~g~~~~~~~~~~~~t~~~~~~~~~ 108 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPGGFSSGALIDAGGRLIAC-EHGVRLLDPDTGGKITLLAEPEDGL 108 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCCCcccceeecCCCeEEEE-ccccEEEeccCCceeEEeccccCCC
Confidence 3556655 5566666788888988866433 333333333222 2 33344433 33344555554444 2111 1
Q ss_pred CcCCEEEEEEcCC-EEEEEECC------------CcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeC
Q 014003 270 PVGEVYSMVVANE-MLFAGAQD------------GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM 334 (432)
Q Consensus 270 ~~~~v~~l~~~~~-~l~~g~~d------------g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~ 334 (432)
.....+...+.++ .+..+... |.|+.+|.. +. ..+.+..+-..-+.|+|+ ++.|+.+..
T Consensus 109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~-----~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GG-----VVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CC-----EEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 2234456666666 55554444 334444432 11 123333333334567786 767766655
Q ss_pred -CCeEEEEECCC--C----ce-EEEecCCCCCcEEEEEc--CCEEEEEeCCC-cEEEEEcCCCCceeEEeeccCCcceEE
Q 014003 335 -DNTIRVWDLDT--L----EA-VMTLNGHTDAPMSLLCW--DQYLLSCSLDN-TIKVWIMTEEGNLEVAYTHNEDHGVLA 403 (432)
Q Consensus 335 -dg~I~vwd~~~--~----~~-~~~~~~~~~~v~~~~~~--~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~ 403 (432)
.+.|.-|++.. + +. ...+....+..-.++.+ |.+.+++-.+| .|.+|+.+ ++.+..+.......+..+
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 48888888752 1 11 12222233434344444 56655444444 89999998 777777776656666667
Q ss_pred EeeeeCCCCCcEEEEEeCC
Q 014003 404 LGGLNDPDGNPVLICSCND 422 (432)
Q Consensus 404 ~~~~~sp~g~~~l~sg~~D 422 (432)
|. .|+.+.+++++...
T Consensus 262 Fg---G~~~~~L~iTs~~~ 277 (307)
T COG3386 262 FG---GPDLNTLYITSARS 277 (307)
T ss_pred Ee---CCCcCEEEEEecCC
Confidence 75 67777677777655
No 378
>PHA02790 Kelch-like protein; Provisional
Probab=95.84 E-value=0.4 Score=47.74 Aligned_cols=167 Identities=10% Similarity=0.059 Sum_probs=84.0
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCceeEEEeCCCc---eeeEEECCCEEEEEcC---CeEEEEEccCCceEeecC--
Q 014003 203 RSDKLYSGSRDG-----TVQLWDCHTGQSASVINLGAE---VGSLICEGPWVFVGMP---NVVKAWHIESSAEFSLDG-- 269 (432)
Q Consensus 203 ~~~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~---~~i~vwd~~~~~~~~~~~-- 269 (432)
++..++.||.++ ++..||..+++-........+ ...+..++.+.++|+. ..+..||..++.=.....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 355566676543 466788877654333322211 2223356666555532 457788876654222221
Q ss_pred -CcCCEEEEEEcCCEEEEEECCC---cEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCC
Q 014003 270 -PVGEVYSMVVANEMLFAGAQDG---NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDT 345 (432)
Q Consensus 270 -~~~~v~~l~~~~~~l~~g~~dg---~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~ 345 (432)
...........+.+.+.|+.++ .+..||..++. +.....+.........+.+++...+.| |.+.+||.++
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~---W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ---WQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE---EEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCC
Confidence 1122223334444666676553 47788877653 333333322222222334456666666 4577898876
Q ss_pred Cce--EEEecCCCCCcEEEEEcCCEEEEEeCC
Q 014003 346 LEA--VMTLNGHTDAPMSLLCWDQYLLSCSLD 375 (432)
Q Consensus 346 ~~~--~~~~~~~~~~v~~~~~~~~~l~s~s~d 375 (432)
.+= +..+.........+...++..+.|+.+
T Consensus 425 ~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 425 NTWTLIDDPIYPRDNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred CcEeEcCCCCCCccccEEEEECCEEEEECCcC
Confidence 432 223322222333444456777777754
No 379
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.70 E-value=3.4 Score=43.48 Aligned_cols=186 Identities=15% Similarity=0.162 Sum_probs=107.8
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCc--------EEEEEec----------------CCCCEEEEEeCCCcE
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKA--------VSGIALP----------------LRSDKLYSGSRDGTV 216 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~--------V~~l~~~----------------~~~~~l~s~s~Dg~v 216 (432)
.+.+..++.++.|.-.|..++ +.+-.+...... ...+++. ..+..++.++.|+.+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TG-k~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATG-KEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCC-cEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 445666677778888888777 455555432210 1223331 134588899999999
Q ss_pred EEEeCCCCceeEEEeCCCcee------------------eEEECCCEEEEEc----------CCeEEEEEccCCceEeec
Q 014003 217 QLWDCHTGQSASVINLGAEVG------------------SLICEGPWVFVGM----------PNVVKAWHIESSAEFSLD 268 (432)
Q Consensus 217 ~iWd~~~~~~~~~~~~~~~~~------------------~~~~~~~~l~~~~----------~~~i~vwd~~~~~~~~~~ 268 (432)
.-.|.++|+....+.....+. -+..++.+++.+. +|.|+-+|.++++..-..
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999887765432221 1223455555432 578999999999865211
Q ss_pred C----------CcCCE---------EEEEEcCC--EEEEEE------------------CCCcEEEEECCCCCCCccccc
Q 014003 269 G----------PVGEV---------YSMVVANE--MLFAGA------------------QDGNILVWKGIPNTQNPFQLA 309 (432)
Q Consensus 269 ~----------~~~~v---------~~l~~~~~--~l~~g~------------------~dg~i~~wd~~~~~~~~~~~~ 309 (432)
. ..+.. ..++++++ +++.+. ..++|.-.|..+++. .
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~-----~ 427 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKE-----R 427 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCce-----E
Confidence 0 01111 12333433 333221 235566677777653 2
Q ss_pred eeeec--cc--------cCe-EEEEE-eCC---EEEEEeCCCeEEEEECCCCceEEEe
Q 014003 310 ALLKG--HT--------RPV-TCLAV-GGK---RLYSGSMDNTIRVWDLDTLEAVMTL 352 (432)
Q Consensus 310 ~~~~~--h~--------~~v-~~l~~-~~~---~l~sgs~dg~I~vwd~~~~~~~~~~ 352 (432)
-.++. |. .++ ..+.. +|+ .++.++.+|.++++|.++|+++...
T Consensus 428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 22221 11 121 22333 343 7899999999999999999987654
No 380
>PHA03098 kelch-like protein; Provisional
Probab=95.42 E-value=0.85 Score=46.18 Aligned_cols=181 Identities=15% Similarity=0.092 Sum_probs=88.0
Q ss_pred CCCEEEEEeCCC------cEEEEeCCCCceeEEEeCC---CceeeEEECCCEEEEEc-C-----CeEEEEEccCCceEee
Q 014003 203 RSDKLYSGSRDG------TVQLWDCHTGQSASVINLG---AEVGSLICEGPWVFVGM-P-----NVVKAWHIESSAEFSL 267 (432)
Q Consensus 203 ~~~~l~s~s~Dg------~v~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~-~-----~~i~vwd~~~~~~~~~ 267 (432)
++..++.||.++ .+..||..+.+-...-... .....+..++.+.+.|+ + +.+..||+.+++=...
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 455666666542 4677888776543322221 11222334566555543 2 3567788776642211
Q ss_pred c---CCcCCEEEEEEcCCEEEEEECC------CcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCC---
Q 014003 268 D---GPVGEVYSMVVANEMLFAGAQD------GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD--- 335 (432)
Q Consensus 268 ~---~~~~~v~~l~~~~~~l~~g~~d------g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~d--- 335 (432)
. ..............+++.|+.+ ..+..||..+++ +.....+.........+..++..++.|+.+
T Consensus 374 ~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 374 PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK---WSKGSPLPISHYGGCAIYHDGKIYVIGGISYID 450 (534)
T ss_pred CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe---eeecCCCCccccCceEEEECCEEEEECCccCCC
Confidence 1 1111122223333355666632 458889987654 333322222122222334456666666643
Q ss_pred -----CeEEEEECCCCceE--EEecCCCCCcEEEEEcCCEEEEEeCC-----CcEEEEEcCCC
Q 014003 336 -----NTIRVWDLDTLEAV--MTLNGHTDAPMSLLCWDQYLLSCSLD-----NTIKVWIMTEE 386 (432)
Q Consensus 336 -----g~I~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~l~s~s~d-----g~i~iwd~~~~ 386 (432)
..+.+||.++.+-. ..+.........+...+..++.|+.+ +.+.+||..+.
T Consensus 451 ~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 451 NIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 23888998765432 22221112222333446666666654 35677776654
No 381
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.40 E-value=0.77 Score=46.78 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=66.1
Q ss_pred CCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEE---EeCCCCceeEEEeCCCceeeEEECCCEE
Q 014003 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQL---WDCHTGQSASVINLGAEVGSLICEGPWV 246 (432)
Q Consensus 170 d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~i---Wd~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (432)
.+.+.+.+++.+ .... ...+.|..+.|+|||..++... +|.|.+ -....|.
T Consensus 429 ~gql~~~~vd~g-e~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--------------------- 482 (591)
T PRK13616 429 TGQLARTPVDAS-AVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--------------------- 482 (591)
T ss_pred CceEEEEeccCc-hhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc---------------------
Confidence 344555555443 2211 3356799999999999988765 354444 2222221
Q ss_pred EEEcCCeEEEEEccCCceEee-cCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeec--cccCeEEE
Q 014003 247 FVGMPNVVKAWHIESSAEFSL-DGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG--HTRPVTCL 322 (432)
Q Consensus 247 ~~~~~~~i~vwd~~~~~~~~~-~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~--h~~~v~~l 322 (432)
.++ .....+ ......+.++.|.++ .|+++..++.-.+|.+.-.... ...+.. ...++..+
T Consensus 483 -------~~l-----~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~----~~~~~~~n~~~~v~~v 546 (591)
T PRK13616 483 -------YAL-----TNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN----SDALPSRNLSAPVVAV 546 (591)
T ss_pred -------eee-----cccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcc----ccccCCCCccCceEEE
Confidence 111 000111 122233567888887 5666666665555554332211 111122 24566666
Q ss_pred EEeCCEEEEEeCCCeEEE
Q 014003 323 AVGGKRLYSGSMDNTIRV 340 (432)
Q Consensus 323 ~~~~~~l~sgs~dg~I~v 340 (432)
+-+...++....+|.+.+
T Consensus 547 aa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 547 AASPSTVYVTDARAVLQL 564 (591)
T ss_pred ecCCceEEEEcCCceEEe
Confidence 666556666666774443
No 382
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.37 E-value=0.4 Score=46.46 Aligned_cols=136 Identities=12% Similarity=0.145 Sum_probs=90.0
Q ss_pred CCCE-EEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--E--------CCCEEEEEcCCeEEEEEccCCce--E-eec
Q 014003 203 RSDK-LYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--C--------EGPWVFVGMPNVVKAWHIESSAE--F-SLD 268 (432)
Q Consensus 203 ~~~~-l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~--------~~~~l~~~~~~~i~vwd~~~~~~--~-~~~ 268 (432)
+.++ |.++.....+.--|++.|+.+........+.-+. + ....+++-.++.|.-||++-... + ..+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 3344 4455556678888999999999988776643222 2 33456666889999999874332 1 111
Q ss_pred ----CCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEE
Q 014003 269 ----GPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVW 341 (432)
Q Consensus 269 ----~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vw 341 (432)
.......|.+...+ ++++|+.+|.|++||- .+. +...-+++-..+|..+... |++++..+ +..+.+.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~----~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi 497 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGR----RAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLI 497 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhh----hhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEE
Confidence 12234456666666 9999999999999996 332 2344567778888887664 77766554 6677777
Q ss_pred ECC
Q 014003 342 DLD 344 (432)
Q Consensus 342 d~~ 344 (432)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 753
No 383
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.34 E-value=2.1 Score=38.71 Aligned_cols=162 Identities=14% Similarity=0.129 Sum_probs=106.8
Q ss_pred EecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC----ceeeEEECCCEEEEE-cCCeEEEEEccCC
Q 014003 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA----EVGSLICEGPWVFVG-MPNVVKAWHIESS 262 (432)
Q Consensus 188 l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~-~~~~i~vwd~~~~ 262 (432)
+.|-+..|.++.|+|+.+.|++......-.+|=..+|+.+++++... +......++.++++. .+..+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 45666679999999999999999988888888888899999998643 222233455565555 5677777766554
Q ss_pred ce--------Eeec---CCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeecc-------ccCeEEE
Q 014003 263 AE--------FSLD---GPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH-------TRPVTCL 322 (432)
Q Consensus 263 ~~--------~~~~---~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h-------~~~v~~l 322 (432)
.. +.+. ........+++++. .++.+-+..-+.+|.+...... .. ......+ -..|..+
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~-l~-~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS-LS-VHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc-cc-cccccCcccccceEeeccccc
Confidence 21 1111 12455678999987 8888888888888877644311 00 1111111 1235567
Q ss_pred EEe---CCEEEEEeCCCeEEEEECCCCceEEEe
Q 014003 323 AVG---GKRLYSGSMDNTIRVWDLDTLEAVMTL 352 (432)
Q Consensus 323 ~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~ 352 (432)
.|+ +..++-+.+++.+.-.|.. |.++..+
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 776 6778888888888888865 4444443
No 384
>PHA02790 Kelch-like protein; Provisional
Probab=95.29 E-value=0.94 Score=45.15 Aligned_cols=168 Identities=10% Similarity=0.029 Sum_probs=82.8
Q ss_pred eEEEEEccCCceEeec---CCcCCEEEEEEcCCEEEEEECC--CcEEEEECCCCCCCccccceeeeccccCeEEEEEeCC
Q 014003 253 VVKAWHIESSAEFSLD---GPVGEVYSMVVANEMLFAGAQD--GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGK 327 (432)
Q Consensus 253 ~i~vwd~~~~~~~~~~---~~~~~v~~l~~~~~~l~~g~~d--g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 327 (432)
.+..||..++.-.... ........+...+...++|+.+ ..+..||..+++ +.....+............+++
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~---W~~~~~l~~~r~~~~~~~~~g~ 364 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAA---WVNMPSLLKPRCNPAVASINNV 364 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCe---EEECCCCCCCCcccEEEEECCE
Confidence 5667888776533222 1122222333444466667653 457888876543 3333333322223334455677
Q ss_pred EEEEEeCCC---eEEEEECCCCceEE--EecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeecc-CCcce
Q 014003 328 RLYSGSMDN---TIRVWDLDTLEAVM--TLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN-EDHGV 401 (432)
Q Consensus 328 ~l~sgs~dg---~I~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~ 401 (432)
..+.|+.++ .+..||.++.+=.. .+.........+...+...+.| |.+.+||..+.+-........ .....
T Consensus 365 IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~ 441 (480)
T PHA02790 365 IYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPE 441 (480)
T ss_pred EEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccE
Confidence 778887654 47788877643221 1111111222233335555555 357788887653221111111 11111
Q ss_pred EEEeeeeCCCCCcEEEEEeCC-----CeEEEeeCCC
Q 014003 402 LALGGLNDPDGNPVLICSCND-----DSVHLYELPS 432 (432)
Q Consensus 402 ~~~~~~~sp~g~~~l~sg~~D-----g~I~iwdl~s 432 (432)
.+. -+|+ +.+.||.+ ..|..||.++
T Consensus 442 ~~v-----~~~~-IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 442 LII-----VDNK-LLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EEE-----ECCE-EEEECCcCCCcccceEEEEECCC
Confidence 111 3666 77777754 4577888753
No 385
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.99 E-value=0.91 Score=40.69 Aligned_cols=195 Identities=11% Similarity=0.075 Sum_probs=105.2
Q ss_pred EEeeccCceeeC-----CCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEE-eCCCCceeEE
Q 014003 156 CYHWLSGNCVKG-----DECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLW-DCHTGQSASV 229 (432)
Q Consensus 156 ~~~~~~~~~~~g-----~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iW-d~~~~~~~~~ 229 (432)
||++.+..+.+- ..-|.|-|||...+++.+.++..|.-.-..+.+.+||+.++.+. |-|..- |.. ...+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfg-R~~lN- 195 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFG-RTELN- 195 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccC-ccccc-
Confidence 455555544332 24478999999999899999999998889999999999988764 435443 211 00000
Q ss_pred EeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEe---e--cCCcCCEEEEEEcCC-EEEEEEC--------------
Q 014003 230 INLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFS---L--DGPVGEVYSMVVANE-MLFAGAQ-------------- 289 (432)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~---~--~~~~~~v~~l~~~~~-~l~~g~~-------------- 289 (432)
+. +..-.+.+.|..++..+. + ..+.-.|..++..++ .+..|++
T Consensus 196 ld-----------------sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~ 258 (366)
T COG3490 196 LD-----------------SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGH 258 (366)
T ss_pred hh-----------------hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceee
Confidence 00 001122223333333221 1 133345555666555 3333332
Q ss_pred ---CCcEEEEECCCCCCCccccceeeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEE
Q 014003 290 ---DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLL 363 (432)
Q Consensus 290 ---dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~ 363 (432)
.+.+...|+... +...-...|-+++.+ +-..+++-.-+...+||..+|..+..-.-. ....+.
T Consensus 259 ~~~g~~l~~~~~pee---------~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva 327 (366)
T COG3490 259 FRKGEPLEFLDLPEE---------QTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVA 327 (366)
T ss_pred ccCCCcCcccCCCHH---------HHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc--ccccce
Confidence 111222221111 011123446677776 334445555567889999999987654321 123334
Q ss_pred EcCCEEEEEeCCCcEEEEE
Q 014003 364 CWDQYLLSCSLDNTIKVWI 382 (432)
Q Consensus 364 ~~~~~l~s~s~dg~i~iwd 382 (432)
....-++..+.+|.+.++.
T Consensus 328 ~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 328 AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred eccCceEEecCCceEEecc
Confidence 4445566667788888774
No 386
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.97 E-value=0.14 Score=52.14 Aligned_cols=68 Identities=21% Similarity=0.272 Sum_probs=56.8
Q ss_pred CEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCC
Q 014003 273 EVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDT 345 (432)
Q Consensus 273 ~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~ 345 (432)
.+++++|+|. .|+.|-.-|.+.+|...+.+. -.....|..+|.-+.|+ |+.++++..-|.+.+|....
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-----htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-----HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCcee-----eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 4567999999 788899999999999776542 33345799999999997 99999999999999998763
No 387
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.90 E-value=1.1 Score=35.36 Aligned_cols=103 Identities=15% Similarity=0.177 Sum_probs=74.7
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCC--------CceeEEEeCCCceeeEEE-------CCCEEEEEcCCeEEEEEccCC
Q 014003 198 IALPLRSDKLYSGSRDGTVQLWDCHT--------GQSASVINLGAEVGSLIC-------EGPWVFVGMPNVVKAWHIESS 262 (432)
Q Consensus 198 l~~~~~~~~l~s~s~Dg~v~iWd~~~--------~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~i~vwd~~~~ 262 (432)
-.|......|+.++.-|.|.|.+... ...+..+.....+.++.. ....|+.+....+..||+..+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N 83 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENN 83 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccC
Confidence 34555556788888889999998763 346677888888888763 466899999999999999999
Q ss_pred ceEeecCCcCCEEEEEEc-----CCEEEEEECCCcEEEEECCC
Q 014003 263 AEFSLDGPVGEVYSMVVA-----NEMLFAGAQDGNILVWKGIP 300 (432)
Q Consensus 263 ~~~~~~~~~~~v~~l~~~-----~~~l~~g~~dg~i~~wd~~~ 300 (432)
..+-...-...+.++.+. +.-++..+.+..|.-||...
T Consensus 84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred chhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 887777777778777763 22444444456666666544
No 388
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.39 E-value=4.7 Score=38.35 Aligned_cols=215 Identities=14% Similarity=0.071 Sum_probs=105.9
Q ss_pred cCCCCEEEEE---------eCCCcEEEEeCCCCceeEEEeC--CCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecC
Q 014003 201 PLRSDKLYSG---------SRDGTVQLWDCHTGQSASVINL--GAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDG 269 (432)
Q Consensus 201 ~~~~~~l~s~---------s~Dg~v~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~ 269 (432)
|||+++++.. +..+.+.++|+++++....... ........+++..++...++.|.+.+..++....+..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~ 80 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTT 80 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEecc
Confidence 4666666653 2346788899988765544333 2333455578889988888999999887775543221
Q ss_pred C------------------cCCEEEEEEcCC--EE-EEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--C
Q 014003 270 P------------------VGEVYSMVVANE--ML-FAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--G 326 (432)
Q Consensus 270 ~------------------~~~v~~l~~~~~--~l-~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~ 326 (432)
. .+.-.++-|+|+ .| +....+..|..+.+........ ....+..+.+- |
T Consensus 81 dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~--------~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 81 DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS--------QYPEVESIRYPKAG 152 (353)
T ss_dssp --TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE--------SS-EEEEEE--BTT
T ss_pred ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc--------cCCcccccccCCCC
Confidence 1 112245778887 44 3344455555554322111000 00122233332 2
Q ss_pred CEEEEEeCCCeEEEEECCCCceEE-E-e---cCCCCCcEEEEEc--CCEEEEE--eCCC---cEEEEEcCCCCceeEEee
Q 014003 327 KRLYSGSMDNTIRVWDLDTLEAVM-T-L---NGHTDAPMSLLCW--DQYLLSC--SLDN---TIKVWIMTEEGNLEVAYT 394 (432)
Q Consensus 327 ~~l~sgs~dg~I~vwd~~~~~~~~-~-~---~~~~~~v~~~~~~--~~~l~s~--s~dg---~i~iwd~~~~~~~~~~~~ 394 (432)
.--.. -.+.|+|+++++... . . ......+..+.|. ++.|+.. +.+. .+.+.|..++........
T Consensus 153 ~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e 228 (353)
T PF00930_consen 153 DPNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE 228 (353)
T ss_dssp S---E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE
T ss_pred CcCCc----eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe
Confidence 22211 136778888876532 1 1 1233346667766 3423333 2332 366677766554333332
Q ss_pred ccCC-c---ceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 395 HNED-H---GVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 395 ~~~~-~---~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
.... + ....+ +.+++..++.....||.-+||-+
T Consensus 229 ~~~~Wv~~~~~~~~---~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 229 TSDGWVDVYDPPHF---LGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp ESSSSSSSSSEEEE----TTTSSEEEEEEETTSSEEEEEE
T ss_pred cCCcceeeeccccc---ccCCCCEEEEEEEcCCCcEEEEE
Confidence 2211 1 12222 13677767777778887666643
No 389
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.31 E-value=5.6 Score=38.72 Aligned_cols=218 Identities=15% Similarity=0.116 Sum_probs=115.3
Q ss_pred CCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCC-----------cEEEEeCCCCcee--EEEeCC
Q 014003 167 GDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDG-----------TVQLWDCHTGQSA--SVINLG 233 (432)
Q Consensus 167 g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg-----------~v~iWd~~~~~~~--~~~~~~ 233 (432)
|++...+++.|++++......+..-. -..++|.++++.|+-...|. .|..|++.+.... ..+...
T Consensus 146 G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~ 223 (414)
T PF02897_consen 146 GSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEP 223 (414)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-T
T ss_pred CCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeec
Confidence 45556799999999833333333221 12399999988877665443 3788888877543 444433
Q ss_pred Cce---eeE--EECCCEEEEE----cC-CeEEEEEccCC-----ceEee-cCCcCCEEEEEEcCC-EEEEE---ECCCcE
Q 014003 234 AEV---GSL--ICEGPWVFVG----MP-NVVKAWHIESS-----AEFSL-DGPVGEVYSMVVANE-MLFAG---AQDGNI 293 (432)
Q Consensus 234 ~~~---~~~--~~~~~~l~~~----~~-~~i~vwd~~~~-----~~~~~-~~~~~~v~~l~~~~~-~l~~g---~~dg~i 293 (432)
... ..+ ..++++++.. .+ ..+.+.++... ....+ ....+....+....+ +++.. ...+.|
T Consensus 224 ~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l 303 (414)
T PF02897_consen 224 DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRL 303 (414)
T ss_dssp TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EE
T ss_pred CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEE
Confidence 222 122 2477777653 33 56888888775 22222 233444455555566 33333 234677
Q ss_pred EEEECCCCCCCccccceeeecccc--CeEEEEEeCCEEEEE-eCCC--eEEEEECCCCceEEEecC-CCCCcEEEEEc--
Q 014003 294 LVWKGIPNTQNPFQLAALLKGHTR--PVTCLAVGGKRLYSG-SMDN--TIRVWDLDTLEAVMTLNG-HTDAPMSLLCW-- 365 (432)
Q Consensus 294 ~~wd~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~l~sg-s~dg--~I~vwd~~~~~~~~~~~~-~~~~v~~~~~~-- 365 (432)
...++........ ...+..+.. .+..+...+++|+.. -.++ .|+++|+..+.....+.. -.+.+..+...
T Consensus 304 ~~~~l~~~~~~~~--~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~ 381 (414)
T PF02897_consen 304 VAVDLADPSPAEW--WTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFD 381 (414)
T ss_dssp EEEETTSTSGGGE--EEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT
T ss_pred EEecccccccccc--eeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCC
Confidence 7778777643111 223444444 456666666665554 4444 688999983444444432 33334444433
Q ss_pred -CCEEEEEeC---CCcEEEEEcCCCCc
Q 014003 366 -DQYLLSCSL---DNTIKVWIMTEEGN 388 (432)
Q Consensus 366 -~~~l~s~s~---dg~i~iwd~~~~~~ 388 (432)
+.+.++.+. -+++..||+.+++.
T Consensus 382 ~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 382 SDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp -SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 234444433 24577777776653
No 390
>PLN02193 nitrile-specifier protein
Probab=93.95 E-value=7.3 Score=38.73 Aligned_cols=102 Identities=7% Similarity=0.074 Sum_probs=52.2
Q ss_pred EEEEEECC-----CcEEEEECCCCCCCccccceeee---ccccCeEEEEEeCCEEEEEeCCC-----eEEEEECCCCceE
Q 014003 283 MLFAGAQD-----GNILVWKGIPNTQNPFQLAALLK---GHTRPVTCLAVGGKRLYSGSMDN-----TIRVWDLDTLEAV 349 (432)
Q Consensus 283 ~l~~g~~d-----g~i~~wd~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~l~sgs~dg-----~I~vwd~~~~~~~ 349 (432)
+++.|+.+ ..+..||+.+.+ +..+..+. ...........++++++.|+.++ .+..||+.+.+-.
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~---W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNE---WKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCE---EEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 55555544 357788887653 33222221 11111122334466667776543 4678888765432
Q ss_pred EEe-----cCCCCCcEEEEEcCCEEEEEeCC----CcEEEEEcCCCC
Q 014003 350 MTL-----NGHTDAPMSLLCWDQYLLSCSLD----NTIKVWIMTEEG 387 (432)
Q Consensus 350 ~~~-----~~~~~~v~~~~~~~~~l~s~s~d----g~i~iwd~~~~~ 387 (432)
..- .............++.++.++.+ ..+.+||+.+.+
T Consensus 308 ~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred eCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCE
Confidence 110 01111222333457777777765 458889987764
No 391
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.88 E-value=8.6 Score=39.32 Aligned_cols=183 Identities=13% Similarity=0.102 Sum_probs=90.5
Q ss_pred cccCcEEEEEecCCCCEEEEEe------CCC--cEEEEeCCCCceeEEEeCCCcee--eEEECCCEEEEEcC--------
Q 014003 190 GHKKAVSGIALPLRSDKLYSGS------RDG--TVQLWDCHTGQSASVINLGAEVG--SLICEGPWVFVGMP-------- 251 (432)
Q Consensus 190 ~H~~~V~~l~~~~~~~~l~s~s------~Dg--~v~iWd~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~-------- 251 (432)
+....+.+.+++|+|+.++... .|. .|.+++.. +.. ..+....... ...+++..+....+
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEe
Confidence 3445788999999999887665 244 44444542 222 3332222222 23345454433322
Q ss_pred -----CeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEE---ECCCCCCCccccceeee-ccccCeE
Q 014003 252 -----NVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVW---KGIPNTQNPFQLAALLK-GHTRPVT 320 (432)
Q Consensus 252 -----~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~w---d~~~~~~~~~~~~~~~~-~h~~~v~ 320 (432)
+.+.+.+++.+.... .....|..+.|++| .++... +|.|++- ....+... ......+. .-...+.
T Consensus 425 ~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~-l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYA-LTNPREVGPGLGDTAV 500 (591)
T ss_pred ccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCcee-ecccEEeecccCCccc
Confidence 233333444333222 33567999999999 444443 5777773 32233211 11111122 2233457
Q ss_pred EEEEe-CCEEEEEeCCCeEEEEECCC-CceEEEecC--CCCCcEEEEEcCCEEEEEeCCCcE
Q 014003 321 CLAVG-GKRLYSGSMDNTIRVWDLDT-LEAVMTLNG--HTDAPMSLLCWDQYLLSCSLDNTI 378 (432)
Q Consensus 321 ~l~~~-~~~l~sgs~dg~I~vwd~~~-~~~~~~~~~--~~~~v~~~~~~~~~l~s~s~dg~i 378 (432)
.+.|. +..|+++..++.-.+|.+.- |.....+.. ....+.+++-....++....++.+
T Consensus 501 ~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~ 562 (591)
T PRK13616 501 SLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARAVL 562 (591)
T ss_pred cceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCceE
Confidence 78886 55566766655555554332 222222222 244566666655556655666633
No 392
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.71 E-value=6.8 Score=37.54 Aligned_cols=191 Identities=18% Similarity=0.163 Sum_probs=106.2
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEe-cc-cCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC---ce
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLE-GH-KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA---EV 236 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~-~H-~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~---~~ 236 (432)
+.+..+..+|.|.-.|.+++... .... .. ...+..-.+..+|+ ++.++.++.+...|..+|+.+-...... -.
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~-W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVK-WSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEE-ecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 34555566777777777766322 2111 10 11222222222555 8888889999999999999998888777 11
Q ss_pred eeEEE-CCCEEEEEcCCeEEEEEccCCceEeecCC----cCCEEE-EEEcCCEEEEEEC--CCcEEEEECCCCCCCcccc
Q 014003 237 GSLIC-EGPWVFVGMPNVVKAWHIESSAEFSLDGP----VGEVYS-MVVANEMLFAGAQ--DGNILVWKGIPNTQNPFQL 308 (432)
Q Consensus 237 ~~~~~-~~~~l~~~~~~~i~vwd~~~~~~~~~~~~----~~~v~~-l~~~~~~l~~g~~--dg~i~~wd~~~~~~~~~~~ 308 (432)
..... ++.....+.++.+...|..++...-.... ...+.. .....+.+..+.. ++.+.-.|..++.......
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 12222 33333333678888888887776422111 111111 1133346666666 6677778887765321100
Q ss_pred ceeeecccc-----CeE--EEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCC
Q 014003 309 AALLKGHTR-----PVT--CLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGH 355 (432)
Q Consensus 309 ~~~~~~h~~-----~v~--~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~ 355 (432)
.....+... .+. .+. .+.-++.++.++.+...|..+++.+.++...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~-v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVY-VDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eecccCcccccccccccCceEE-ECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 001111110 011 111 1444577888899999999999999998764
No 393
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.67 E-value=5.1 Score=35.97 Aligned_cols=190 Identities=11% Similarity=0.048 Sum_probs=107.7
Q ss_pred ceeEEEeCCCce--eeEEE--CCCEEE-EEc--CCeEEEEEccCCceEeecCCcCC--EEEEEEcCC-EEEEEECCCcEE
Q 014003 225 QSASVINLGAEV--GSLIC--EGPWVF-VGM--PNVVKAWHIESSAEFSLDGPVGE--VYSMVVANE-MLFAGAQDGNIL 294 (432)
Q Consensus 225 ~~~~~~~~~~~~--~~~~~--~~~~l~-~~~--~~~i~vwd~~~~~~~~~~~~~~~--v~~l~~~~~-~l~~g~~dg~i~ 294 (432)
+.+.++++.... ..+.. ++.++- +|. ...|+.+|+.+++.......... -..++..++ .....-.++...
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEE
Confidence 345555554432 23333 334333 333 34899999999987644433333 345666677 445566788999
Q ss_pred EEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCC-----CcEEEEEcCCEE
Q 014003 295 VWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD-----APMSLLCWDQYL 369 (432)
Q Consensus 295 ~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~l 369 (432)
+||..+- +.+.++.- ...=..++.+++.|+.+.....|+.+|.++.+...++..... .+..+.+-+..|
T Consensus 114 ~yd~~tl-----~~~~~~~y-~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~I 187 (264)
T PF05096_consen 114 VYDPNTL-----KKIGTFPY-PGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKI 187 (264)
T ss_dssp EEETTTT-----EEEEEEE--SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEE
T ss_pred EEccccc-----eEEEEEec-CCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEE
Confidence 9998764 34555542 345567888888888888888999999999888777754322 244455554444
Q ss_pred EE-EeCCCcEEEEEcCCCCceeEEeec---------cCC--cceEEEeeeeCCCCCcEEEEEe
Q 014003 370 LS-CSLDNTIKVWIMTEEGNLEVAYTH---------NED--HGVLALGGLNDPDGNPVLICSC 420 (432)
Q Consensus 370 ~s-~s~dg~i~iwd~~~~~~~~~~~~~---------~~~--~~~~~~~~~~sp~g~~~l~sg~ 420 (432)
.+ .=....|...|..+++....+... ... ...+--..+++|+.+.++++|-
T Consensus 188 yANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 188 YANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 43 334566777888887766554320 000 0122223344788887888884
No 394
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.63 E-value=3.3 Score=37.45 Aligned_cols=127 Identities=10% Similarity=0.133 Sum_probs=77.8
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEee
Q 014003 80 ESQTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHW 159 (432)
Q Consensus 80 ~~~~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (432)
..-.+++.|-+..+-+++|+|+.+.|++-......-||=...+.... ...+.. -+.++.+.+.-
T Consensus 75 ~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlir----tiPL~g------------~~DpE~Ieyig 138 (316)
T COG3204 75 RIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIR----TIPLTG------------FSDPETIEYIG 138 (316)
T ss_pred EEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEE----Eecccc------------cCChhHeEEec
Confidence 33445677888889999999999999998866666666333322110 000000 11122333333
Q ss_pred ccCceeeCCCCCeEEEEeCCCCcEE------EEEEe--cc-cCcEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 014003 160 LSGNCVKGDECRFWHSWFCGEGFTM------LAKLE--GH-KKAVSGIALPLRSDKLYSGSRDGTVQLWDCH 222 (432)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~~~~~------~~~l~--~H-~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~ 222 (432)
.+...++-..++.+.+..++.+... ...|. .+ +.....++|.|..+.|+.+-+-.-+.|+.+.
T Consensus 139 ~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 139 GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 3445666777777777776443111 11121 23 6788999999999999988887777777765
No 395
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.59 E-value=4.1 Score=39.74 Aligned_cols=155 Identities=12% Similarity=0.119 Sum_probs=79.8
Q ss_pred eecCCcCCEEEEEEcCC---EEEE--EECC-CcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEE-EEeCCC--
Q 014003 266 SLDGPVGEVYSMVVANE---MLFA--GAQD-GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLY-SGSMDN-- 336 (432)
Q Consensus 266 ~~~~~~~~v~~l~~~~~---~l~~--g~~d-g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~-sgs~dg-- 336 (432)
.+......+..-.|+++ .... -... ..+.++|+.++.. ..+..+.++.. ......+|+.|+ +...||
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~---~~i~~~~g~~~-~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR---PVILNFNGNNG-APAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc---ceeeccCCccC-CccCCCCCCEEEEEECCCCCc
Confidence 34444455566666666 2222 2222 4699999998864 23333444332 233444566654 455566
Q ss_pred eEEEEECCCCceEEEecCCCCC--cEEEEEcCCEEEEE-eCCCcEEE--EEcCCCCceeEEeeccCCcceEEEeeeeCCC
Q 014003 337 TIRVWDLDTLEAVMTLNGHTDA--PMSLLCWDQYLLSC-SLDNTIKV--WIMTEEGNLEVAYTHNEDHGVLALGGLNDPD 411 (432)
Q Consensus 337 ~I~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~l~s~-s~dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 411 (432)
.|+++|+.++.. ..+....+. -.++..+|+.|+-. +..|.-.| .+.+.... ..+......-. ...++||
T Consensus 263 ~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~----~p~~Spd 336 (425)
T COG0823 263 DIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS----NPVWSPD 336 (425)
T ss_pred cEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc----CccCCCC
Confidence 467778877663 334322222 23333346666554 45565444 45544443 22222222211 4455999
Q ss_pred CCcEEEEEeCCCe--EEEeeC
Q 014003 412 GNPVLICSCNDDS--VHLYEL 430 (432)
Q Consensus 412 g~~~l~sg~~Dg~--I~iwdl 430 (432)
|+.+++.+..+|. |.+.|+
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~ 357 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDL 357 (425)
T ss_pred CCEEEEEeccCCceeeEEecc
Confidence 9977777755565 555544
No 396
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.53 E-value=12 Score=39.68 Aligned_cols=168 Identities=13% Similarity=0.132 Sum_probs=99.9
Q ss_pred eEEEEEccCCceEeecCC-----cCCEEEEEEcCC---EEEEEE----------CCCcEEEEECCCCCCCccccceeeec
Q 014003 253 VVKAWHIESSAEFSLDGP-----VGEVYSMVVANE---MLFAGA----------QDGNILVWKGIPNTQNPFQLAALLKG 314 (432)
Q Consensus 253 ~i~vwd~~~~~~~~~~~~-----~~~v~~l~~~~~---~l~~g~----------~dg~i~~wd~~~~~~~~~~~~~~~~~ 314 (432)
.++++|-.+-+.+..... ...+.++.+..+ ++++|+ ..|.|.+|.+...+. .+.+.+..-
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~--L~~v~e~~v 828 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS--LELVAETVV 828 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc--eeeeeeeee
Confidence 466677666665533221 223444456655 777775 357888888877322 344444332
Q ss_pred cccCeEEE-EEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc-ee
Q 014003 315 HTRPVTCL-AVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN-LE 390 (432)
Q Consensus 315 h~~~v~~l-~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~-~~ 390 (432)
.+.+.++ .|+|+++|. -+..|++|+..+.+.++.-..+..++..+... ++.++.|..-+.+.+-..+..+- ..
T Consensus 829 -~Gav~aL~~fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ 905 (1096)
T KOG1897|consen 829 -KGAVYALVEFNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFE 905 (1096)
T ss_pred -ccceeehhhhCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceE
Confidence 3444444 456777665 45789999999988888777788887777665 99999999999888776665442 22
Q ss_pred EEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 391 VAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
.....-.+....+.. --++. .++.+..+|.+.+-.
T Consensus 906 evArD~~p~Wmtave---il~~d-~ylgae~~gNlf~v~ 940 (1096)
T KOG1897|consen 906 EVARDYNPNWMTAVE---ILDDD-TYLGAENSGNLFTVR 940 (1096)
T ss_pred EeehhhCccceeeEE---EecCc-eEEeecccccEEEEE
Confidence 222222222222221 12344 455566677766544
No 397
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.31 E-value=13 Score=39.43 Aligned_cols=185 Identities=12% Similarity=0.113 Sum_probs=112.3
Q ss_pred cEEEEEecCC-CCEEEEEeC----------CCcEEEEeCCCCce---eEEEeCCCceeeEEECCCEEEEEcCCeEEEEEc
Q 014003 194 AVSGIALPLR-SDKLYSGSR----------DGTVQLWDCHTGQS---ASVINLGAEVGSLICEGPWVFVGMPNVVKAWHI 259 (432)
Q Consensus 194 ~V~~l~~~~~-~~~l~s~s~----------Dg~v~iWd~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~ 259 (432)
.|.++.|..| +.+++.|.. .|.|.++....++. +......+.+.++..-+..+.++-...|++++.
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In~~vrLye~ 855 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGINQSVRLYEW 855 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecCcEEEEEEc
Confidence 3444558666 677777643 46777777766332 233334455555555566677888899999999
Q ss_pred cCCceEe-ecCCcCCEEEE--EEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEE-eCCEEEEEeCC
Q 014003 260 ESSAEFS-LDGPVGEVYSM--VVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV-GGKRLYSGSMD 335 (432)
Q Consensus 260 ~~~~~~~-~~~~~~~v~~l--~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sgs~d 335 (432)
.+.+.+. ...+...+..+ ....|.+++|.--+++.+...+..+....+..+ .-+....+++.+ ++..++-+..+
T Consensus 856 t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr--D~~p~Wmtaveil~~d~ylgae~~ 933 (1096)
T KOG1897|consen 856 TTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR--DYNPNWMTAVEILDDDTYLGAENS 933 (1096)
T ss_pred cccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh--hhCccceeeEEEecCceEEeeccc
Confidence 8886554 33455555554 455679999999998888766655432111111 235566777766 47777777888
Q ss_pred CeEEEEECCC-------------------CceEEEecCCCCCcEEEE----EcCCEEEEEeCCCcEEEE
Q 014003 336 NTIRVWDLDT-------------------LEAVMTLNGHTDAPMSLL----CWDQYLLSCSLDNTIKVW 381 (432)
Q Consensus 336 g~I~vwd~~~-------------------~~~~~~~~~~~~~v~~~~----~~~~~l~s~s~dg~i~iw 381 (432)
|.+.+--..+ |+.+..+. |..-|+++- +-+..++-|..+|.|-+-
T Consensus 934 gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~-hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 934 GNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFR-HGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred ccEEEEEecCCCCchhhhhcccceeeEEeccceeeee-ecceEeeccccccCCCCcEEEEEccceEEEE
Confidence 8888775543 12222222 333344421 113458888888887665
No 398
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.85 E-value=9.9 Score=36.98 Aligned_cols=189 Identities=15% Similarity=0.204 Sum_probs=99.6
Q ss_pred EEEEEecCCCCEEEEE-eCCC----cEEEEeCCCCceeEEE-eCCCce-eeEEECCCEE-EEEc-----------CCeEE
Q 014003 195 VSGIALPLRSDKLYSG-SRDG----TVQLWDCHTGQSASVI-NLGAEV-GSLICEGPWV-FVGM-----------PNVVK 255 (432)
Q Consensus 195 V~~l~~~~~~~~l~s~-s~Dg----~v~iWd~~~~~~~~~~-~~~~~~-~~~~~~~~~l-~~~~-----------~~~i~ 255 (432)
+...+++|+++++|-+ +..| ++++.|+++++.+... ...... .....++..+ .+.. ...|.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 3467789999988754 3334 5999999999766533 211111 2222354444 4442 33478
Q ss_pred EEEccCCce---EeecCCcCC--EEEEEEcCC--EEE-EEECC---CcEEEEECCCCCCCccccceeeeccccCe-EEEE
Q 014003 256 AWHIESSAE---FSLDGPVGE--VYSMVVANE--MLF-AGAQD---GNILVWKGIPNTQNPFQLAALLKGHTRPV-TCLA 323 (432)
Q Consensus 256 vwd~~~~~~---~~~~~~~~~--v~~l~~~~~--~l~-~g~~d---g~i~~wd~~~~~~~~~~~~~~~~~h~~~v-~~l~ 323 (432)
.|.+.+... +.+...... ...+..+++ +++ ..... ..+.+.|+......... ...+......+ ..+.
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~-~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAK-PKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-S-EEEEEESSSS-EEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCC-cEEEeCCCCceEEEEE
Confidence 888877642 333333332 567777777 333 33333 35788888774100011 22222233333 3344
Q ss_pred EeCCEEEEEe----CCCeEEEEECCCCce---EEEecCCCC--CcEEEEEcCCEEEEE-eCCC--cEEEEEcC
Q 014003 324 VGGKRLYSGS----MDNTIRVWDLDTLEA---VMTLNGHTD--APMSLLCWDQYLLSC-SLDN--TIKVWIMT 384 (432)
Q Consensus 324 ~~~~~l~sgs----~dg~I~vwd~~~~~~---~~~~~~~~~--~v~~~~~~~~~l~s~-s~dg--~i~iwd~~ 384 (432)
..+..++.-+ .++.|.-.++.+... ...+..+.. .+..+...+++|+.. ..++ .|+++++.
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 4465544433 346788888887653 335555555 456666666555544 4444 47888887
No 399
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=92.80 E-value=9.6 Score=36.69 Aligned_cols=247 Identities=15% Similarity=0.158 Sum_probs=133.5
Q ss_pred EEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCceeEEEeCC-C--ceeeEEECCCEEEE
Q 014003 173 WHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGS-RDGTVQLWDCHTGQSASVINLG-A--EVGSLICEGPWVFV 248 (432)
Q Consensus 173 i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~-~--~~~~~~~~~~~l~~ 248 (432)
+.+++..+. .....+.-+. ....+...+++..++... ....+..-+............. . ....+...+..+.+
T Consensus 13 ~~v~~~~~~-~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTN-KVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeeccc-EEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEE
Confidence 555555443 3333333222 555677778775444333 2234555554422222222222 1 11233345554443
Q ss_pred E--cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEEC---CCcEEEEECCCCCCCccccceeeeccccCeEE
Q 014003 249 G--MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQ---DGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (432)
Q Consensus 249 ~--~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~---dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 321 (432)
. .++.|.+.|..................++++++ .+.++.. ++.+.+.|..+.+. ......-..+ ..
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~-----~~~~~vG~~P-~~ 164 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV-----TATIPVGNTP-TG 164 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE-----EEEEecCCCc-ce
Confidence 3 478999999877776655444445667777766 4444433 68888888877643 3333333334 56
Q ss_pred EEEe--CCEEEEEe-CCCeEEEEECCCCceEE-----EecCCCC-CcEEEEEcCCEEEEEeCC---CcEEEEEcCCCCce
Q 014003 322 LAVG--GKRLYSGS-MDNTIRVWDLDTLEAVM-----TLNGHTD-APMSLLCWDQYLLSCSLD---NTIKVWIMTEEGNL 389 (432)
Q Consensus 322 l~~~--~~~l~sgs-~dg~I~vwd~~~~~~~~-----~~~~~~~-~v~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~ 389 (432)
++++ |+.++... .++.|.+.|.++..... ....... ....+...+.++...... +.+...|..+....
T Consensus 165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~ 244 (381)
T COG3391 165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVT 244 (381)
T ss_pred EEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEE
Confidence 6775 77655554 78999999987766653 1221222 223333446655444433 58888888877655
Q ss_pred eEEeeccC-CcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 390 EVAYTHNE-DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 390 ~~~~~~~~-~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
........ ....+.. +|+|+.+.+.-+..+.+.+-|..
T Consensus 245 ~~~~~~~~~~~~~v~~----~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 245 ATDLPVGSGAPRGVAV----DPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred EeccccccCCCCceeE----CCCCCEEEEEecCCCeEEEEeCC
Confidence 54222221 2233444 79999444443555777776654
No 400
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.30 E-value=5.7 Score=40.47 Aligned_cols=97 Identities=12% Similarity=0.187 Sum_probs=61.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEec-CCCCCcEEEEEc----CCEEEEEeCCCcEEEEEcC-----CC----CceeE
Q 014003 326 GKRLYSGSMDNTIRVWDLDTLEAVMTLN-GHTDAPMSLLCW----DQYLLSCSLDNTIKVWIMT-----EE----GNLEV 391 (432)
Q Consensus 326 ~~~l~sgs~dg~I~vwd~~~~~~~~~~~-~~~~~v~~~~~~----~~~l~s~s~dg~i~iwd~~-----~~----~~~~~ 391 (432)
++..++-+....+.|||.+.+.....-. ...+.|..+.|. ++.+++.+....|.++--. .. ..+..
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~ 120 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRK 120 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEE
Confidence 4455555555689999999887654433 356778999887 6899999999999998542 11 12222
Q ss_pred Ee--ecc-CCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 392 AY--THN-EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 392 ~~--~~~-~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
+. .+. .++....| -++|. ++ .|+ ++.+.|+|
T Consensus 121 i~i~~~T~h~Igds~W----l~~G~-Lv-V~s-GNqlfv~d 154 (631)
T PF12234_consen 121 IDISSHTPHPIGDSIW----LKDGT-LV-VGS-GNQLFVFD 154 (631)
T ss_pred EEeecCCCCCccceeE----ecCCe-EE-EEe-CCEEEEEC
Confidence 21 122 34555444 68887 33 332 45677765
No 401
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.20 E-value=0.76 Score=29.18 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=27.0
Q ss_pred CCcCCEEEEEEcCC--EEEEEECCCcEEEEECC
Q 014003 269 GPVGEVYSMVVANE--MLFAGAQDGNILVWKGI 299 (432)
Q Consensus 269 ~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~ 299 (432)
.....|..+.|+|. ++|.++.+|.|.+|.+.
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 44567899999998 99999999999999983
No 402
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=92.06 E-value=12 Score=36.05 Aligned_cols=196 Identities=18% Similarity=0.166 Sum_probs=122.1
Q ss_pred ceEEeeccC-ceeeCCCCCeEEEEeCCCCcEEEEEE-ecccCcEEEEEecCCCCEEEEEeC---CCcEEEEeCCCCceeE
Q 014003 154 NVCYHWLSG-NCVKGDECRFWHSWFCGEGFTMLAKL-EGHKKAVSGIALPLRSDKLYSGSR---DGTVQLWDCHTGQSAS 228 (432)
Q Consensus 154 ~~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~l-~~H~~~V~~l~~~~~~~~l~s~s~---Dg~v~iWd~~~~~~~~ 228 (432)
.+....... ..+....+..|.+.|..+. +..... .+. .-..++++++++.++.+.. ++++.+.|..+++...
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~-~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATN-TVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCccc-ceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 334444444 4555666788999997665 323322 233 6678999999988777766 6899999999999888
Q ss_pred EEeCCCcee--eEEECCCEEEEE--cCCeEEEEEccCCceEe-----ecCCcCCEEEEEEcCC--EEEEEECC---CcEE
Q 014003 229 VINLGAEVG--SLICEGPWVFVG--MPNVVKAWHIESSAEFS-----LDGPVGEVYSMVVANE--MLFAGAQD---GNIL 294 (432)
Q Consensus 229 ~~~~~~~~~--~~~~~~~~l~~~--~~~~i~vwd~~~~~~~~-----~~~~~~~v~~l~~~~~--~l~~g~~d---g~i~ 294 (432)
....+.... .+.+++..+.+. .++.+.+.|........ .......-..+.++++ .+.+.... +.+.
T Consensus 155 ~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~ 234 (381)
T COG3391 155 TIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL 234 (381)
T ss_pred EEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence 876654223 334677766655 58999999977776653 1122223345566655 33333332 5888
Q ss_pred EEECCCCCCCcccccee-eeccc--cCeEEEEEeCCEEEEEeC-CCeEEEEECCCCceEEEecCCCC
Q 014003 295 VWKGIPNTQNPFQLAAL-LKGHT--RPVTCLAVGGKRLYSGSM-DNTIRVWDLDTLEAVMTLNGHTD 357 (432)
Q Consensus 295 ~wd~~~~~~~~~~~~~~-~~~h~--~~v~~l~~~~~~l~sgs~-dg~I~vwd~~~~~~~~~~~~~~~ 357 (432)
..|..++.. ... ..... ..-..+...++.+++... .+.+.+.|..+......+.....
T Consensus 235 ~id~~~~~v-----~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~ 296 (381)
T COG3391 235 KIDTATGNV-----TATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNE 296 (381)
T ss_pred EEeCCCceE-----EEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccccc
Confidence 888877642 111 11111 111223334888877744 48999999999888777654433
No 403
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=7.2 Score=33.51 Aligned_cols=148 Identities=15% Similarity=0.103 Sum_probs=92.4
Q ss_pred CCCEEEEEeCC--CcEEEEeCCCCceeEEEeCCC-ce--eeEEECCC--EEEEEcCCeEEEEEccCCceEeecCCcCCEE
Q 014003 203 RSDKLYSGSRD--GTVQLWDCHTGQSASVINLGA-EV--GSLICEGP--WVFVGMPNVVKAWHIESSAEFSLDGPVGEVY 275 (432)
Q Consensus 203 ~~~~l~s~s~D--g~v~iWd~~~~~~~~~~~~~~-~~--~~~~~~~~--~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~ 275 (432)
+|.++.+.+.- ..|++||+.+++.+...+... .+ ..+.--+. +..+=.++....+|.++-+.+......++=+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 45667766653 369999999999988877662 11 12222222 3445578888999998888776677777888
Q ss_pred EEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeE---EEEE-eCCEEEEEeCCCeEEEEECCCCceEEE
Q 014003 276 SMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT---CLAV-GGKRLYSGSMDNTIRVWDLDTLEAVMT 351 (432)
Q Consensus 276 ~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~---~l~~-~~~~l~sgs~dg~I~vwd~~~~~~~~~ 351 (432)
.++.+...++.+....+++.-|..+-... ..+. ......+|. -+.+ +|...|---.+..|...|.++|+.+..
T Consensus 135 gLt~d~~~LimsdGsatL~frdP~tfa~~--~~v~-VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~w 211 (262)
T COG3823 135 GLTSDDKNLIMSDGSATLQFRDPKTFAEL--DTVQ-VTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAW 211 (262)
T ss_pred eeecCCcceEeeCCceEEEecCHHHhhhc--ceEE-EEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEE
Confidence 88888877777766677777776553221 0011 111122232 3333 355555555666777778888887766
Q ss_pred ec
Q 014003 352 LN 353 (432)
Q Consensus 352 ~~ 353 (432)
+.
T Consensus 212 id 213 (262)
T COG3823 212 ID 213 (262)
T ss_pred EE
Confidence 53
No 404
>smart00356 ZnF_C3H1 zinc finger.
Probab=91.76 E-value=0.11 Score=28.36 Aligned_cols=23 Identities=43% Similarity=1.016 Sum_probs=19.4
Q ss_pred CceeeeeeecCccCC-CCCccccc
Q 014003 57 KKVLCVYFLEGRCNR-NPCRFAHT 79 (432)
Q Consensus 57 ~~~~~~~~~~~~~~~-~p~~~l~~ 79 (432)
+..+|.+|..|.|.+ ..|+|+|.
T Consensus 3 k~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 3 KTELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCcCcCccCCCCCCCCCcCCCCc
Confidence 346899999999999 56999985
No 405
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=91.53 E-value=13 Score=35.36 Aligned_cols=239 Identities=13% Similarity=0.085 Sum_probs=118.9
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCc---------------
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE--------------- 235 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~--------------- 235 (432)
+.+.+||++++ + +..+......+....|+|+|+.++-.. ++.|.+++..+++..+.-..+..
T Consensus 23 ~~y~i~d~~~~-~-~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 23 GDYYIYDIETG-E-ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEETTTT-E-EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred eeEEEEecCCC-c-eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 55889999886 3 333433367889999999999998886 57899999887744433322200
Q ss_pred -----eeeEEECCCEEEEE--cCC-----------------------------------eEEEEEccCCceEee------
Q 014003 236 -----VGSLICEGPWVFVG--MPN-----------------------------------VVKAWHIESSAEFSL------ 267 (432)
Q Consensus 236 -----~~~~~~~~~~l~~~--~~~-----------------------------------~i~vwd~~~~~~~~~------ 267 (432)
.....++++.|+.- .+. .+.++|+.+++...+
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~ 179 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL 179 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence 01122344444321 111 334455555543211
Q ss_pred cCCcCCEEEEEEcCC-E-EEEEE--CCC---cEEEEECCCCCCCccccceeeeccccCe---EEEEE---e-CCEEEEEe
Q 014003 268 DGPVGEVYSMVVANE-M-LFAGA--QDG---NILVWKGIPNTQNPFQLAALLKGHTRPV---TCLAV---G-GKRLYSGS 333 (432)
Q Consensus 268 ~~~~~~v~~l~~~~~-~-l~~g~--~dg---~i~~wd~~~~~~~~~~~~~~~~~h~~~v---~~l~~---~-~~~l~sgs 333 (432)
.....-+..+.|.++ . +++.- .+. .+.++|..++.. +.+.. ......| ..+.+ + ..++....
T Consensus 180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~---~~~~~-e~~~~Wv~~~~~~~~~~~~~~~~l~~s~ 255 (353)
T PF00930_consen 180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET---RVVLE-ETSDGWVDVYDPPHFLGPDGNEFLWISE 255 (353)
T ss_dssp HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC---EEEEE-EESSSSSSSSSEEEE-TTTSSEEEEEEE
T ss_pred CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce---eEEEE-ecCCcceeeecccccccCCCCEEEEEEE
Confidence 123445667777666 2 44332 222 356667666542 11111 1112221 12332 2 45555666
Q ss_pred CCC--eEEEEECCCCceEEEecCCCCCcEEEEE-c--CC-EEEEEeCCC--cEEEE--EcCCCCceeEEeeccCCcceEE
Q 014003 334 MDN--TIRVWDLDTLEAVMTLNGHTDAPMSLLC-W--DQ-YLLSCSLDN--TIKVW--IMTEEGNLEVAYTHNEDHGVLA 403 (432)
Q Consensus 334 ~dg--~I~vwd~~~~~~~~~~~~~~~~v~~~~~-~--~~-~l~s~s~dg--~i~iw--d~~~~~~~~~~~~~~~~~~~~~ 403 (432)
.|| .|.+++...+. ...+....-.|..+.. + ++ ..+++..++ .-.+| ++..+..+..+.......
T Consensus 256 ~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~---- 330 (353)
T PF00930_consen 256 RDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH---- 330 (353)
T ss_dssp TTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT----
T ss_pred cCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc----
Confidence 777 45566666555 4456555555655443 3 33 444555433 44444 444223344443333332
Q ss_pred EeeeeCCCCCcEEEEEeC
Q 014003 404 LGGLNDPDGNPVLICSCN 421 (432)
Q Consensus 404 ~~~~~sp~g~~~l~sg~~ 421 (432)
+...+||+|++++...+.
T Consensus 331 ~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 331 YSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp EEEEE-TTSSEEEEEEES
T ss_pred eEEEECCCCCEEEEEEcC
Confidence 333449999976666554
No 406
>PLN02153 epithiospecifier protein
Probab=91.50 E-value=13 Score=35.20 Aligned_cols=143 Identities=9% Similarity=-0.045 Sum_probs=68.1
Q ss_pred ECCCEEEEEc-C-----CeEEEEEccCCceEeecC------CcCC-EEEEEEcCC-EEEEEECC-----------CcEEE
Q 014003 241 CEGPWVFVGM-P-----NVVKAWHIESSAEFSLDG------PVGE-VYSMVVANE-MLFAGAQD-----------GNILV 295 (432)
Q Consensus 241 ~~~~~l~~~~-~-----~~i~vwd~~~~~~~~~~~------~~~~-v~~l~~~~~-~l~~g~~d-----------g~i~~ 295 (432)
.++.+++.|. + +.+.++|+++.+=..... +... -.+++...+ +++.|+.+ ..+.+
T Consensus 84 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 84 VGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred ECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEE
Confidence 4555554442 1 357788887654222111 1111 223344444 55666643 24778
Q ss_pred EECCCCCCCccccceeee---ccccCeEEEEEeCCEEEEEeCC-------------CeEEEEECCCCceEEEe-----cC
Q 014003 296 WKGIPNTQNPFQLAALLK---GHTRPVTCLAVGGKRLYSGSMD-------------NTIRVWDLDTLEAVMTL-----NG 354 (432)
Q Consensus 296 wd~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~l~sgs~d-------------g~I~vwd~~~~~~~~~~-----~~ 354 (432)
||..+.+ +..+.... ..........+++++++.|+.+ ..+.+||..+.+-...- ..
T Consensus 164 yd~~~~~---W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~ 240 (341)
T PLN02153 164 YNIADGK---WVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS 240 (341)
T ss_pred EECCCCe---EeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCC
Confidence 8887653 32222111 1111122334556666655432 46889998875432211 11
Q ss_pred CCCCcEEEEEcCCEEEEEeCC--------------CcEEEEEcCCC
Q 014003 355 HTDAPMSLLCWDQYLLSCSLD--------------NTIKVWIMTEE 386 (432)
Q Consensus 355 ~~~~v~~~~~~~~~l~s~s~d--------------g~i~iwd~~~~ 386 (432)
.......+.+.+..++.|+.. +.+..+|+.+.
T Consensus 241 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 241 ARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred CcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 111122333346667777742 25677777654
No 407
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=91.35 E-value=15 Score=35.85 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=56.5
Q ss_pred EEEEEEcCC---EEEEEECCCc--EEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEe-CCC--eEEEEECCC
Q 014003 274 VYSMVVANE---MLFAGAQDGN--ILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGS-MDN--TIRVWDLDT 345 (432)
Q Consensus 274 v~~l~~~~~---~l~~g~~dg~--i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs-~dg--~I~vwd~~~ 345 (432)
-....|+|+ ++++...||. |+++|+..+.. .+ +....+... -.++..+|+.++-.+ ..| .|.+.|.+.
T Consensus 240 ~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~--~~-Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 240 NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL--PR-LTNGFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc--ee-cccCCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCC
Confidence 334556665 6666677776 55556666542 11 122222221 223444577765544 445 466667766
Q ss_pred CceEE-EecCCCCCcEEEEEcCCEEEEEeC-CCc--EEEEEcCCCCc
Q 014003 346 LEAVM-TLNGHTDAPMSLLCWDQYLLSCSL-DNT--IKVWIMTEEGN 388 (432)
Q Consensus 346 ~~~~~-~~~~~~~~v~~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~ 388 (432)
....+ ++.+........+.+|++|+..+. +|. |.+.|+.++..
T Consensus 316 ~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 316 SQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred CceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 55422 222222223334444777777664 344 66666666554
No 408
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.34 E-value=13 Score=36.31 Aligned_cols=137 Identities=8% Similarity=0.079 Sum_probs=77.8
Q ss_pred EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEE----e---CCEEEEEeCCCeEEEEECCCCc-eEEEe--
Q 014003 283 MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV----G---GKRLYSGSMDNTIRVWDLDTLE-AVMTL-- 352 (432)
Q Consensus 283 ~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~----~---~~~l~sgs~dg~I~vwd~~~~~-~~~~~-- 352 (432)
++..|....+++-.|+..++ ++..+..|..-+..... . ...-++|-++..|.-.|.+-.. .+..-
T Consensus 482 i~~dg~~~~kLykmDIErGk-----vveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGK-----VVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred EEecCCCcccceeeecccce-----eeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 44556667777777887764 56777777665332211 1 2234455566677777765322 22111
Q ss_pred ---cCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 353 ---NGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 353 ---~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
.+...-.....-.+.|++++|..|-|++||--...-...+.+....+..+.. +.+|+.+|+++ ...+.+-|
T Consensus 557 KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idv----ta~Gk~ilaTC--k~yllL~d 630 (776)
T COG5167 557 KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDV----TANGKHILATC--KNYLLLTD 630 (776)
T ss_pred hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEe----ecCCcEEEEee--cceEEEEe
Confidence 1111111112222689999999999999996554433444455555666666 67899555554 33555555
Q ss_pred C
Q 014003 430 L 430 (432)
Q Consensus 430 l 430 (432)
+
T Consensus 631 ~ 631 (776)
T COG5167 631 V 631 (776)
T ss_pred c
Confidence 4
No 409
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.01 E-value=1.3 Score=27.42 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=26.0
Q ss_pred CcEEEEEecCCC---CEEEEEeCCCcEEEEeCCCC
Q 014003 193 KAVSGIALPLRS---DKLYSGSRDGTVQLWDCHTG 224 (432)
Q Consensus 193 ~~V~~l~~~~~~---~~l~s~s~Dg~v~iWd~~~~ 224 (432)
++|.++.|+|++ ++|+-+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999754 47888777899999999853
No 410
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.92 E-value=12 Score=35.11 Aligned_cols=111 Identities=12% Similarity=0.082 Sum_probs=53.7
Q ss_pred EEEcCCEEEEEECC-----CcEEEEECCCCCCC-ccccceeeeccccCeEEEEEeCCEEEEEeC-----CCeEEEEECCC
Q 014003 277 MVVANEMLFAGAQD-----GNILVWKGIPNTQN-PFQLAALLKGHTRPVTCLAVGGKRLYSGSM-----DNTIRVWDLDT 345 (432)
Q Consensus 277 l~~~~~~l~~g~~d-----g~i~~wd~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~-----dg~I~vwd~~~ 345 (432)
+.....+++.|+.+ ..+..||+.+..-. .+.....+............++++.+.|+. ...+..||+++
T Consensus 69 ~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 69 VSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred EEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCC
Confidence 33333355666654 35667777664310 001111121111112233345666677664 24688899876
Q ss_pred Cce--EEEecC-CCCCcEEEEEcCCEEEEEeCCCc----EEEEEcCCCC
Q 014003 346 LEA--VMTLNG-HTDAPMSLLCWDQYLLSCSLDNT----IKVWIMTEEG 387 (432)
Q Consensus 346 ~~~--~~~~~~-~~~~v~~~~~~~~~l~s~s~dg~----i~iwd~~~~~ 387 (432)
.+= +..+.. .......+...+++.+.|+.++. +.+||..+.+
T Consensus 149 ~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 149 QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 542 222221 11222233445777777776643 4578877654
No 411
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.79 E-value=7.5 Score=40.63 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=32.3
Q ss_pred cccCcEEEEEecCC---CCEEEEEeCCCcEEEEeCCCCc-eeEEEe
Q 014003 190 GHKKAVSGIALPLR---SDKLYSGSRDGTVQLWDCHTGQ-SASVIN 231 (432)
Q Consensus 190 ~H~~~V~~l~~~~~---~~~l~s~s~Dg~v~iWd~~~~~-~~~~~~ 231 (432)
.+...|..+.|+|. +..|+.-..|+++|+||+...+ +..++.
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 45678999999886 5789999999999999997543 333333
No 412
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.35 E-value=2.3 Score=37.39 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=48.1
Q ss_pred cCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEe-------c-------CCCCCcEEEEEc--CCEEEEEeCCCcEEE
Q 014003 317 RPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTL-------N-------GHTDAPMSLLCW--DQYLLSCSLDNTIKV 380 (432)
Q Consensus 317 ~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~-------~-------~~~~~v~~~~~~--~~~l~s~s~dg~i~i 380 (432)
.++..+..++++|++-+.+|.+++||+.+++.+..- . .....|..+... |.-+++- .+|..+.
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~ 91 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYS 91 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEE
Confidence 456667778999999999999999999998875432 1 233456666665 4444443 4678888
Q ss_pred EEcCCC
Q 014003 381 WIMTEE 386 (432)
Q Consensus 381 wd~~~~ 386 (432)
|+..-.
T Consensus 92 y~~~L~ 97 (219)
T PF07569_consen 92 YSPDLG 97 (219)
T ss_pred eccccc
Confidence 887644
No 413
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.08 E-value=12 Score=32.73 Aligned_cols=86 Identities=15% Similarity=0.075 Sum_probs=58.1
Q ss_pred EEEEEe---CCEEEEEeCCCeEEEEE--CCCCc-----eEEEecCC---C---CCcEEEEEcCCEEEEEeCCCcEEEEEc
Q 014003 320 TCLAVG---GKRLYSGSMDNTIRVWD--LDTLE-----AVMTLNGH---T---DAPMSLLCWDQYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 320 ~~l~~~---~~~l~sgs~dg~I~vwd--~~~~~-----~~~~~~~~---~---~~v~~~~~~~~~l~s~s~dg~i~iwd~ 383 (432)
..++|+ ..+.++-+.+-.|.-|| ..+|. .+..++.. . -.-+++.-.|++.++.-.-++|...|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 356776 34556667788887787 45543 34444321 1 112444445888888888999999999
Q ss_pred CCCCceeEEeeccCCcceEEEe
Q 014003 384 TEEGNLEVAYTHNEDHGVLALG 405 (432)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~ 405 (432)
.+++.+..+......+++.+|.
T Consensus 241 ~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEec
Confidence 9999999888777777666664
No 414
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.07 E-value=2 Score=37.75 Aligned_cols=68 Identities=16% Similarity=0.284 Sum_probs=44.8
Q ss_pred CCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEE------ee--------ccCCcceEEEeeeeCCCCCcEEEEEeCC
Q 014003 357 DAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVA------YT--------HNEDHGVLALGGLNDPDGNPVLICSCND 422 (432)
Q Consensus 357 ~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------~~--------~~~~~~~~~~~~~~sp~g~~~l~sg~~D 422 (432)
.++..+...+++|++.+.+|.+++||+.+.+.+... .. ....+....+ +.+|.+++.. .+
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~l----t~~G~PiV~l--sn 86 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSL----TSNGVPIVTL--SN 86 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEE----cCCCCEEEEE--eC
Confidence 356667778999999999999999999987653322 11 1122222222 6788855443 35
Q ss_pred CeEEEeeC
Q 014003 423 DSVHLYEL 430 (432)
Q Consensus 423 g~I~iwdl 430 (432)
|..+.|+.
T Consensus 87 g~~y~y~~ 94 (219)
T PF07569_consen 87 GDSYSYSP 94 (219)
T ss_pred CCEEEecc
Confidence 77888875
No 415
>PLN02153 epithiospecifier protein
Probab=89.34 E-value=20 Score=33.91 Aligned_cols=106 Identities=10% Similarity=0.183 Sum_probs=51.0
Q ss_pred EEcCCEEEEEECC-----CcEEEEECCCCCCCccccceeeecc--ccC--eEE-EEEeCCEEEEEeCC-----------C
Q 014003 278 VVANEMLFAGAQD-----GNILVWKGIPNTQNPFQLAALLKGH--TRP--VTC-LAVGGKRLYSGSMD-----------N 336 (432)
Q Consensus 278 ~~~~~~l~~g~~d-----g~i~~wd~~~~~~~~~~~~~~~~~h--~~~--v~~-l~~~~~~l~sgs~d-----------g 336 (432)
.+...+++.|+.+ ..+.+||..+.+ +..+..+... ..+ -.+ ...++++++.|+.+ .
T Consensus 83 ~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~---W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 159 (341)
T PLN02153 83 AVGTKLYIFGGRDEKREFSDFYSYDTVKNE---WTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFR 159 (341)
T ss_pred EECCEEEEECCCCCCCccCcEEEEECCCCE---EEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccc
Confidence 3333366666643 357788887653 3322222100 000 112 22346666676653 2
Q ss_pred eEEEEECCCCceEEEecC------CCCCcEEEEEcCCEEEEEeCC-------------CcEEEEEcCCCC
Q 014003 337 TIRVWDLDTLEAVMTLNG------HTDAPMSLLCWDQYLLSCSLD-------------NTIKVWIMTEEG 387 (432)
Q Consensus 337 ~I~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~~l~s~s~d-------------g~i~iwd~~~~~ 387 (432)
.+.+||.++.+=. .+.. .........+.+++++.++.+ ..+.+||..+.+
T Consensus 160 ~v~~yd~~~~~W~-~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 160 TIEAYNIADGKWV-QLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred eEEEEECCCCeEe-eCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 5778898764322 1111 111122233446665655432 458888887654
No 416
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=89.01 E-value=8.5 Score=39.29 Aligned_cols=60 Identities=8% Similarity=0.034 Sum_probs=43.3
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEe--cCCCCEEEEEeCCCcEEEEeC
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIAL--PLRSDKLYSGSRDGTVQLWDC 221 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~--~~~~~~l~s~s~Dg~v~iWd~ 221 (432)
..++..+....+.|||...+.-....--...+.|.++.| .|+++.+++.|....|.++--
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 334444555689999998763222211145789999999 679999999999999999864
No 417
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.35 E-value=24 Score=33.73 Aligned_cols=185 Identities=15% Similarity=0.100 Sum_probs=108.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEEEeCCC---ce--eeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcC--CEEEE
Q 014003 205 DKLYSGSRDGTVQLWDCHTGQSASVINLGA---EV--GSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVG--EVYSM 277 (432)
Q Consensus 205 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~--~v~~l 277 (432)
..++.+..||.|.-.|.+++..+-...... .. ..+..++++++...++.+..+|..+++..-...... .+..-
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 345556788888888888888665444332 11 112247888888888889999998777653332222 22222
Q ss_pred EEcCC-EEEEEECCCcEEEEECCCCCCCcccc-c---eeeeccccCeEEEEEeCCEEEEEeC--CCeEEEEECCCCceEE
Q 014003 278 VVANE-MLFAGAQDGNILVWKGIPNTQNPFQL-A---ALLKGHTRPVTCLAVGGKRLYSGSM--DNTIRVWDLDTLEAVM 350 (432)
Q Consensus 278 ~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~-~---~~~~~h~~~v~~l~~~~~~l~sgs~--dg~I~vwd~~~~~~~~ 350 (432)
....+ .+..++.+|.+...|..+++.. +.. . ........++ .....++.+.. ++.+.-.|.++|....
T Consensus 149 ~v~~~~~v~~~s~~g~~~al~~~tG~~~-W~~~~~~~~~~~~~~~~~----~~~~~vy~~~~~~~~~~~a~~~~~G~~~w 223 (370)
T COG1520 149 PVVGDGTVYVGTDDGHLYALNADTGTLK-WTYETPAPLSLSIYGSPA----IASGTVYVGSDGYDGILYALNAEDGTLKW 223 (370)
T ss_pred cEEcCcEEEEecCCCeEEEEEccCCcEE-EEEecCCccccccccCce----eecceEEEecCCCcceEEEEEccCCcEee
Confidence 22233 5666667899999998877531 000 0 0111111111 33555566655 6788888999998877
Q ss_pred EecCCCC----Cc-EEEEEc------CCEEEEEeCCCcEEEEEcCCCCceeEEee
Q 014003 351 TLNGHTD----AP-MSLLCW------DQYLLSCSLDNTIKVWIMTEEGNLEVAYT 394 (432)
Q Consensus 351 ~~~~~~~----~v-~~~~~~------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 394 (432)
..+.+.. .+ ..-... +.-+..++.++.+...|..+++.+.....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 224 SQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 7432211 11 000111 34557777888888888888887766655
No 418
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.72 E-value=25 Score=34.72 Aligned_cols=121 Identities=13% Similarity=0.015 Sum_probs=64.5
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEeccc---------------------CcEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHK---------------------KAVSGIALPLRSDKLYSGSRDGTVQLWDC 221 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~---------------------~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~ 221 (432)
+++.+..| .+..||.....-.+..+++.. -.|..+..++.|..++-+|.+|.+.++=.
T Consensus 54 N~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp 132 (741)
T KOG4460|consen 54 NVVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMELP 132 (741)
T ss_pred chhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEch
Confidence 44455544 666676655434444444211 24667777889999998888886655432
Q ss_pred CCCceeEEEeCCCce-eeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC-----EEEEEECCCcEEE
Q 014003 222 HTGQSASVINLGAEV-GSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-----MLFAGAQDGNILV 295 (432)
Q Consensus 222 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~-----~l~~g~~dg~i~~ 295 (432)
+..-.-..++.+.++ .|-. ..+. ..+-.....-.+...+|+|+ .+..-+.|..|++
T Consensus 133 ~rwG~~s~~eDgk~~v~CRt----------------~~i~--~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRi 194 (741)
T KOG4460|consen 133 KRWGKNSEFEDGKSTVNCRT----------------TPVA--ERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRI 194 (741)
T ss_pred hhcCccceecCCCceEEEEe----------------eccc--ceeeccCCceeeeeccccCCccCCceEEEEecCcEEEE
Confidence 222222222222111 1110 1110 01111223334556677775 6788888999999
Q ss_pred EECCCCC
Q 014003 296 WKGIPNT 302 (432)
Q Consensus 296 wd~~~~~ 302 (432)
||+...+
T Consensus 195 y~lS~~t 201 (741)
T KOG4460|consen 195 YSLSEPT 201 (741)
T ss_pred EecCCcc
Confidence 9987754
No 419
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=87.36 E-value=13 Score=35.82 Aligned_cols=144 Identities=18% Similarity=0.279 Sum_probs=67.4
Q ss_pred EEEEE-ECCCcEEEEECCCCCCCccccceeeec---cc-------cCeEEEEEeCCEEEEEe--C----CCeEEEEECCC
Q 014003 283 MLFAG-AQDGNILVWKGIPNTQNPFQLAALLKG---HT-------RPVTCLAVGGKRLYSGS--M----DNTIRVWDLDT 345 (432)
Q Consensus 283 ~l~~g-~~dg~i~~wd~~~~~~~~~~~~~~~~~---h~-------~~v~~l~~~~~~l~sgs--~----dg~I~vwd~~~ 345 (432)
+|++. -.++.|+++|+.+.... -++.+.++. +. ..+.|+. +|+.++++- . -|-+.+.|-++
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~-P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRK-PRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS--EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred cEEeeeeccCcEEEEECCCCCCC-CceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 55554 47889999999865432 223333322 11 1122221 376777642 2 35688999998
Q ss_pred CceEEEecCCCC-CcEEEEEc----CCEEEEEeC--------------------CCcEEEEEcCCCCceeEEeeccCCcc
Q 014003 346 LEAVMTLNGHTD-APMSLLCW----DQYLLSCSL--------------------DNTIKVWIMTEEGNLEVAYTHNEDHG 400 (432)
Q Consensus 346 ~~~~~~~~~~~~-~v~~~~~~----~~~l~s~s~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~~ 400 (432)
.+.......... ......++ .+.++|... -.++.+||+.+.+.++.+....+...
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 888887765433 23333333 356666543 36799999999998888876655445
Q ss_pred eEEEeeeeCCCCCcEEEEEeCCCeEEEe
Q 014003 401 VLALGGLNDPDGNPVLICSCNDDSVHLY 428 (432)
Q Consensus 401 ~~~~~~~~sp~g~~~l~sg~~Dg~I~iw 428 (432)
.+.+.+.+.|+...-++.+.-..+|..|
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred eEEEEecCCCCccceEEEEeccceEEEE
Confidence 5666667788877555554455555444
No 420
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=87.35 E-value=42 Score=36.11 Aligned_cols=167 Identities=12% Similarity=0.112 Sum_probs=101.7
Q ss_pred eEEEEeCCCCcEEEEEEec----ccCcEEEEEecCCCC--EEEEEeC-----------CCcEEEEeC-CCCc---eeEEE
Q 014003 172 FWHSWFCGEGFTMLAKLEG----HKKAVSGIALPLRSD--KLYSGSR-----------DGTVQLWDC-HTGQ---SASVI 230 (432)
Q Consensus 172 ~i~vw~~~~~~~~~~~l~~----H~~~V~~l~~~~~~~--~l~s~s~-----------Dg~v~iWd~-~~~~---~~~~~ 230 (432)
.|++.|..++ +.+..+.- -.-.|.++.|+.... +++.|.. +|.+..|++ +.++ .+...
T Consensus 854 ~I~~~d~~s~-~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSG-KIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT 932 (1205)
T ss_pred eEEEEcCCCC-ceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc
Confidence 4777887666 33332221 123456666754332 3333322 334555554 2333 33334
Q ss_pred eCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEe---ecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccc
Q 014003 231 NLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFS---LDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQ 307 (432)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~---~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~ 307 (432)
.....+.++.+....+.+|....+++|++...+... .......|..+.+....+++|...-++.++-.+...+.
T Consensus 933 ~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~--- 1009 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQ--- 1009 (1205)
T ss_pred CCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCe---
Confidence 455667777777779999999999999998877553 22346678888888889999988888877766655431
Q ss_pred cceeeec--cccCeEEEEE-eCCEEEEEeCCCeEEEEEC
Q 014003 308 LAALLKG--HTRPVTCLAV-GGKRLYSGSMDNTIRVWDL 343 (432)
Q Consensus 308 ~~~~~~~--h~~~v~~l~~-~~~~l~sgs~dg~I~vwd~ 343 (432)
...+-. -...|+++.+ +...+|.+..-|.+.+-.+
T Consensus 1010 -l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1010 -LIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred -EEEEeCCCccceeeEEEEecCCceeeccccCcEEEEEC
Confidence 222221 1223555444 5777888887787777654
No 421
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=87.24 E-value=0.16 Score=27.94 Aligned_cols=23 Identities=48% Similarity=1.110 Sum_probs=16.7
Q ss_pred ceeeeeeec-CccCC-CCCcccccc
Q 014003 58 KVLCVYFLE-GRCNR-NPCRFAHTE 80 (432)
Q Consensus 58 ~~~~~~~~~-~~~~~-~p~~~l~~~ 80 (432)
..+|.+|.. |.|.+ .-|+|.|.+
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred cccChhhccCCccCCCCCcCccCCC
Confidence 468998888 99999 899999963
No 422
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.04 E-value=26 Score=32.71 Aligned_cols=106 Identities=8% Similarity=0.063 Sum_probs=51.0
Q ss_pred EEEEeCCEEEEEeCC-----CeEEEEECCCCce---EEEecC---CCCCcEEEEEcCCEEEEEeC-----CCcEEEEEcC
Q 014003 321 CLAVGGKRLYSGSMD-----NTIRVWDLDTLEA---VMTLNG---HTDAPMSLLCWDQYLLSCSL-----DNTIKVWIMT 384 (432)
Q Consensus 321 ~l~~~~~~l~sgs~d-----g~I~vwd~~~~~~---~~~~~~---~~~~v~~~~~~~~~l~s~s~-----dg~i~iwd~~ 384 (432)
.+..++..++.|+.+ ..+..+|+.+.+- ...+.. ...........+...+.|+. ...+..||+.
T Consensus 68 ~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~ 147 (323)
T TIGR03548 68 SVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLE 147 (323)
T ss_pred EEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCC
Confidence 344456666777754 3577778776553 122211 11112223334666666664 2357788887
Q ss_pred CCCceeEEeecc-CCcceEEEeeeeCCCCCcEEEEEeCCCe----EEEeeCC
Q 014003 385 EEGNLEVAYTHN-EDHGVLALGGLNDPDGNPVLICSCNDDS----VHLYELP 431 (432)
Q Consensus 385 ~~~~~~~~~~~~-~~~~~~~~~~~~sp~g~~~l~sg~~Dg~----I~iwdl~ 431 (432)
+.+-........ ......+. ..+++ +.+.|+.++. +.+||++
T Consensus 148 ~~~W~~~~~~p~~~r~~~~~~----~~~~~-iYv~GG~~~~~~~~~~~yd~~ 194 (323)
T TIGR03548 148 TQEWFELPDFPGEPRVQPVCV----KLQNE-LYVFGGGSNIAYTDGYKYSPK 194 (323)
T ss_pred CCCeeECCCCCCCCCCcceEE----EECCE-EEEEcCCCCccccceEEEecC
Confidence 654221110111 11111111 23556 7777776543 4577765
No 423
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=86.98 E-value=24 Score=32.17 Aligned_cols=258 Identities=10% Similarity=0.049 Sum_probs=151.2
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEeccc-CcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee---EEEeCCC-ceee
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHK-KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSA---SVINLGA-EVGS 238 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~-~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~---~~~~~~~-~~~~ 238 (432)
...+..+.-++|.|+.+..++...-.-.. +--.++.. .|++...+..|.-.-+.|+.+.+.. ....... ....
T Consensus 99 vyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~ 176 (370)
T COG5276 99 VYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHD 176 (370)
T ss_pred EEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCcee
Confidence 33444555689999976544433222222 33344443 5899999997777888898765433 3333222 2235
Q ss_pred EEECCCEEEEE-cCCeEEEEEccCCceEee---cCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeec
Q 014003 239 LICEGPWVFVG-MPNVVKAWHIESSAEFSL---DGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKG 314 (432)
Q Consensus 239 ~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~---~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~ 314 (432)
+...|+...++ .++-+.+.|+.....-.+ ......+.++..++++....-.+.-+.+-|....+. ....-..+.
T Consensus 177 v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ss--p~~~gsyet 254 (370)
T COG5276 177 VAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSS--PTVFGSYET 254 (370)
T ss_pred EEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEEecCCCCC--ceEeecccc
Confidence 55566666655 899999999887654333 333447889999999666666677788888777653 112222221
Q ss_pred -cccCeEEEEEeCCEEEEEeCCCeEEEEECCCCce---EEEecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCcee
Q 014003 315 -HTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEA---VMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLE 390 (432)
Q Consensus 315 -h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 390 (432)
....++.+..++++.+....+.-+.+-|+.+... ...+.........+...+.++..+..+ ...+-+....+-..
T Consensus 255 ~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s~~s~m~ 333 (370)
T COG5276 255 SNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDASPPSMMD 333 (370)
T ss_pred CCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEecCeeEeccCC-ceEEEeCCChhhcc
Confidence 1123334566799999988888888888765322 223332333455666667777777666 45556655443322
Q ss_pred EEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 391 VAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
...+.......-.. +-+.+ ++.+...++-+.||+.-
T Consensus 334 ~~~g~~ti~~s~~v----~~~~q-~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 334 KRPGRPTIGQSCDV----SVDTQ-IIYSTDYNGGLSIIEYL 369 (370)
T ss_pred cccCcceEeeecce----EEEee-EEEEeecCCCEEEEEec
Confidence 22222111111111 23455 78888889999999863
No 424
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.98 E-value=42 Score=34.93 Aligned_cols=111 Identities=13% Similarity=0.205 Sum_probs=66.4
Q ss_pred eEEEEEe----CCEEEEEeCCCeEEEEECCCC--------------------ceEEEecCCCCCcEEEEEc----CCEEE
Q 014003 319 VTCLAVG----GKRLYSGSMDNTIRVWDLDTL--------------------EAVMTLNGHTDAPMSLLCW----DQYLL 370 (432)
Q Consensus 319 v~~l~~~----~~~l~sgs~dg~I~vwd~~~~--------------------~~~~~~~~~~~~v~~~~~~----~~~l~ 370 (432)
|+-|... ...|+.+..||.|.+|.+++- ++...+. -...+..+++. .++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 4445443 668899999999999976320 1112222 22356777775 46777
Q ss_pred EEeCCCcEEEEEcCCC-CceeE--EeeccCCcceEEEeeee-CCCCCcEEEEEeCCCeEEEeeC
Q 014003 371 SCSLDNTIKVWIMTEE-GNLEV--AYTHNEDHGVLALGGLN-DPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 371 s~s~dg~i~iwd~~~~-~~~~~--~~~~~~~~~~~~~~~~~-sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
+++....|.||-.... +.... ...+...+..++|.-.- +++|...+++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7777778888866542 11111 11244445555553221 2334347888999999999886
No 425
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=86.64 E-value=23 Score=31.71 Aligned_cols=188 Identities=13% Similarity=0.037 Sum_probs=93.3
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecc-cCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-eeEEEeCCCceeeEE
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGH-KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ-SASVINLGAEVGSLI 240 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H-~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~-~~~~~~~~~~~~~~~ 240 (432)
..+.....+.|...+.+. +.+..+.-. .+...+|++..++.++++.-.++.+.+.++.... .+..-.
T Consensus 36 LfaV~d~~~~i~els~~G--~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~--------- 104 (248)
T PF06977_consen 36 LFAVQDEPGEIYELSLDG--KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRAD--------- 104 (248)
T ss_dssp EEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEE---------
T ss_pred EEEEECCCCEEEEEcCCC--CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhh---------
Confidence 556667788888888753 445554322 4678899998778777776668999888884322 111000
Q ss_pred ECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCC--CCCCccccc-----ee
Q 014003 241 CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIP--NTQNPFQLA-----AL 311 (432)
Q Consensus 241 ~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~--~~~~~~~~~-----~~ 311 (432)
+.-+.+. ........+..+++++. .++++-+..-..+|.+.. .... .... ..
T Consensus 105 -------------~~~~~l~-----~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~-~~~~~~~~~~~ 165 (248)
T PF06977_consen 105 -------------VQKISLG-----FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD-LFVSDDQDLDD 165 (248)
T ss_dssp -------------EEEEE--------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS---EEEE-HHHH-
T ss_pred -------------ceEEecc-----cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc-eeecccccccc
Confidence 0000000 00123445778888775 666666666666666554 1110 0000 00
Q ss_pred eeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCC---------CCcEEEEEc-CCEEEEEeCCCcE
Q 014003 312 LKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT---------DAPMSLLCW-DQYLLSCSLDNTI 378 (432)
Q Consensus 312 ~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~---------~~v~~~~~~-~~~l~s~s~dg~i 378 (432)
.......+..++++ +.+++.+..+..|..+| .+|+++..+.-.. ...-.++++ ...|...++-+..
T Consensus 166 ~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlf 244 (248)
T PF06977_consen 166 DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLF 244 (248)
T ss_dssp HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEE
T ss_pred ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceE
Confidence 11223346778887 67888888899999999 6677766553222 134556665 3345555555544
Q ss_pred EEE
Q 014003 379 KVW 381 (432)
Q Consensus 379 ~iw 381 (432)
++|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 433
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.57 E-value=25 Score=36.22 Aligned_cols=174 Identities=12% Similarity=0.085 Sum_probs=85.7
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC------CCceeeEEECCC
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL------GAEVGSLICEGP 244 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~------~~~~~~~~~~~~ 244 (432)
-.|+|++... +++..+......+-.+.|+.+ ..|+....||++.++++... .+..... ..-..+....+.
T Consensus 64 ~~I~If~~sG--~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 64 PYIRIFNISG--QLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred eeEEEEeccc--cchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCc
Confidence 4578888754 444444444458889999855 55777889999999998632 2222121 111223333444
Q ss_pred EEEEEcCCe-EEEEEccCCceEeecC---CcCCEEEEEEcCC-----EEE-EEECCCcEEEEECCCCCCCccccceeeec
Q 014003 245 WVFVGMPNV-VKAWHIESSAEFSLDG---PVGEVYSMVVANE-----MLF-AGAQDGNILVWKGIPNTQNPFQLAALLKG 314 (432)
Q Consensus 245 ~l~~~~~~~-i~vwd~~~~~~~~~~~---~~~~v~~l~~~~~-----~l~-~g~~dg~i~~wd~~~~~~~~~~~~~~~~~ 314 (432)
..+-..++. +.+-+.+......+.. ....-.|....++ .++ +.-..+ ..++....... + ...+..
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~---q-~~~~~~ 214 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRV---Q-LHALSW 214 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccc---c-ccccCC
Confidence 444333333 3333443333222222 1111122222211 111 110111 01111111111 1 111111
Q ss_pred cccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEec
Q 014003 315 HTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN 353 (432)
Q Consensus 315 h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~ 353 (432)
....+..+..+ .++|+--.++|.|.+-+.+..+....+.
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 12344555554 8899999999999999988877766665
No 427
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=86.44 E-value=34 Score=33.33 Aligned_cols=135 Identities=15% Similarity=0.255 Sum_probs=81.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc-----eeEEEeCCCceeeEEE-------CCCEEEEEcCCeEEEEEccCCc-------
Q 014003 203 RSDKLYSGSRDGTVQLWDCHTGQ-----SASVINLGAEVGSLIC-------EGPWVFVGMPNVVKAWHIESSA------- 263 (432)
Q Consensus 203 ~~~~l~s~s~Dg~v~iWd~~~~~-----~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~i~vwd~~~~~------- 263 (432)
+...++.||..|.++|++...+. .+-..+...++..+.. ....+++-....+.+|.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 34689999999999999986543 4555566777776653 3357777888999999873221
Q ss_pred eE---eecCCc--CCEEEEEEc-------CCEEEEEECCCcEEEEECCCCCCCccccceeeec--cccCeEEEEEeCCEE
Q 014003 264 EF---SLDGPV--GEVYSMVVA-------NEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKG--HTRPVTCLAVGGKRL 329 (432)
Q Consensus 264 ~~---~~~~~~--~~v~~l~~~-------~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~l 329 (432)
.. ....|. .....++.. .+.+.+-+.||.+.+|+-+.-. ....+.. ..+++. ....-+.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-----f~~~lp~~llPgPl~-Y~~~tDsf 189 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-----FSRFLPDFLLPGPLC-YCPRTDSF 189 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-----EEEEcCCCCCCcCeE-EeecCCEE
Confidence 11 111221 122233322 2388999999999999865532 1111211 223321 11225677
Q ss_pred EEEeCCCeEEEEEC
Q 014003 330 YSGSMDNTIRVWDL 343 (432)
Q Consensus 330 ~sgs~dg~I~vwd~ 343 (432)
++++.+..+..|..
T Consensus 190 vt~sss~~l~~Yky 203 (418)
T PF14727_consen 190 VTASSSWTLECYKY 203 (418)
T ss_pred EEecCceeEEEecH
Confidence 77777778887765
No 428
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.39 E-value=6.5 Score=39.97 Aligned_cols=74 Identities=24% Similarity=0.384 Sum_probs=43.4
Q ss_pred cCCEEEEEECCCcEEEEECCCCCCC--ccccc--------eeee-----------ccccCeEEEE--E----eCCEEEEE
Q 014003 280 ANEMLFAGAQDGNILVWKGIPNTQN--PFQLA--------ALLK-----------GHTRPVTCLA--V----GGKRLYSG 332 (432)
Q Consensus 280 ~~~~l~~g~~dg~i~~wd~~~~~~~--~~~~~--------~~~~-----------~h~~~v~~l~--~----~~~~l~sg 332 (432)
++..++++..||.+...+....... .+... ..+. .....+..++ . +..++++-
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 5668889999999988887651100 00000 0000 0112222222 2 37889999
Q ss_pred eCCCeEEEEECCCCceEEEec
Q 014003 333 SMDNTIRVWDLDTLEAVMTLN 353 (432)
Q Consensus 333 s~dg~I~vwd~~~~~~~~~~~ 353 (432)
+.|+++|+||+.+++++.+..
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEec
Confidence 999999999999999977653
No 429
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.19 E-value=38 Score=32.80 Aligned_cols=143 Identities=8% Similarity=0.011 Sum_probs=77.1
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-eeEEEeCCCceeeEE--ECCCEEEEEcCCeEEEEEccCCc-----eEe
Q 014003 195 VSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ-SASVINLGAEVGSLI--CEGPWVFVGMPNVVKAWHIESSA-----EFS 266 (432)
Q Consensus 195 V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~-~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~vwd~~~~~-----~~~ 266 (432)
...+..++++.+++.+..-..++-||--... ..........+..+. .++.++.++..|.+..- ...++ .+.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S-~d~G~~~~~~~f~ 319 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVS-KGTGLTEEDFDFE 319 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEe-cCCCCccccccee
Confidence 3445566777766665543333344432111 112222233334433 47778888877775543 33332 122
Q ss_pred ecC---CcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe-CCEEEEEeCCCeEEEE
Q 014003 267 LDG---PVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVW 341 (432)
Q Consensus 267 ~~~---~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~vw 341 (432)
... ....+.++.+.++ .+++++.+|.+..-. ..++. ++.......-....+.+.|. .+..+..+.+|.|.-|
T Consensus 320 ~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~t--W~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 320 EADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKS--WKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcc--eeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 111 2235788888876 788888888776664 23322 23322222234567788875 5677777788887655
No 430
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=85.13 E-value=11 Score=36.65 Aligned_cols=51 Identities=20% Similarity=0.066 Sum_probs=41.8
Q ss_pred EEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC
Q 014003 184 MLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA 234 (432)
Q Consensus 184 ~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~ 234 (432)
....|......+.+|+.+|++++.|+...=|.|.++|+.++..++..+.-.
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR 349 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR 349 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc
Confidence 344566667789999999999998888888999999999998888777543
No 431
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=85.03 E-value=3.8 Score=23.23 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=21.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEe
Q 014003 326 GKRLYSGSMDNTIRVWDLDTLEAVMTL 352 (432)
Q Consensus 326 ~~~l~sgs~dg~I~vwd~~~~~~~~~~ 352 (432)
+..++.++.+|.+..+|.++|+.+.++
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 446788888999999999888887654
No 432
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=84.67 E-value=43 Score=35.03 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=80.1
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEE---EecccCcEEEEEecCCCCEEEEEeCCCcEEE--------EeCCCCceeEEE
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAK---LEGHKKAVSGIALPLRSDKLYSGSRDGTVQL--------WDCHTGQSASVI 230 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~---l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~i--------Wd~~~~~~~~~~ 230 (432)
+....|.+++.+-++.-..+..+... .......+.++.+++. -+..|.-||++-. ||.+- .+...
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~ep--~~~~~ 623 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGEP--NISIP 623 (925)
T ss_pred CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCCC--ccccc
Confidence 35667888888888877532122222 2233466777776543 2444555555544 55431 11112
Q ss_pred eCCCceeeEEECCCEEEEEcCCeEEEEEccCCceE----eecCCcCCEEEEEEcCCEEEEEECCCc-EEEEECC
Q 014003 231 NLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEF----SLDGPVGEVYSMVVANEMLFAGAQDGN-ILVWKGI 299 (432)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~----~~~~~~~~v~~l~~~~~~l~~g~~dg~-i~~wd~~ 299 (432)
....++........++.++.+|.+.++...+.... ....+...|+++.+.++-+..+-..|. +++++..
T Consensus 624 ~g~lPvrsla~~ed~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhte 697 (925)
T KOG3522|consen 624 TGSLPVRSLAFQEDFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTE 697 (925)
T ss_pred cCCccccchhhhhceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEeccc
Confidence 23345556666788899999999999988765432 345667789999999884444444444 4444433
No 433
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=84.54 E-value=33 Score=32.87 Aligned_cols=140 Identities=17% Similarity=0.176 Sum_probs=72.0
Q ss_pred cccCcEEEEEecCC-----CCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceee--------EEECCCEEEE-------E
Q 014003 190 GHKKAVSGIALPLR-----SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS--------LICEGPWVFV-------G 249 (432)
Q Consensus 190 ~H~~~V~~l~~~~~-----~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~-------~ 249 (432)
.|...|.+++.+-+ ++.+..-+.-+.|-+|+..+++....+.....-.. +...+.++.. .
T Consensus 216 ~~~~~v~s~~~s~~~~F~i~~~l~~~s~~~~Igvw~~~t~q~~d~~~~s~~dsag~~~kL~w~ng~~~li~~~~fp~~~k 295 (465)
T KOG2714|consen 216 NTVKGVFSLAVSVDPLFFIGTQLVALSSVGKIGVWHAVTQQAQDVQPISSYDSAGSFLKLGWLNGSNLLIDSQKFPLRMK 295 (465)
T ss_pred cceEEEEeecccccchhhhhhhhhhccccccccccchhhhceeeeeeccCccccCChhhhccccCceeEEEEeecccccc
Confidence 34555555555433 33455556778899999998855544443221111 1111222222 2
Q ss_pred cCCeEEEEEccCCceEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCC-CccccceeeeccccCeEEEEEeCCE
Q 014003 250 MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQ-NPFQLAALLKGHTRPVTCLAVGGKR 328 (432)
Q Consensus 250 ~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~ 328 (432)
.++.|++||.++.. ++..| ..++.++..+.+++-+...... ....+..++..|..+.. +
T Consensus 296 dN~~i~~~d~Rd~n-----------~~~~W--~~i~~gt~~~~vrv~~~~~~~~~~~~~l~~~f~~~~~~L~-------~ 355 (465)
T KOG2714|consen 296 DNDLIVTEDFRDRN-----------TSGNW--IEIAYGTSSGEVRVIDQHPETVGVGPCLFQTFEVHGSPLG-------L 355 (465)
T ss_pred CCceEEEeeccCCC-----------ccceE--EEecCCccccceEeeeccccccCCCCeEEEEEEecCCCcc-------e
Confidence 45677888877654 11111 1455667777777776543321 11223444455554411 3
Q ss_pred EEEEeCCCeEEEEECCCCceE
Q 014003 329 LYSGSMDNTIRVWDLDTLEAV 349 (432)
Q Consensus 329 l~sgs~dg~I~vwd~~~~~~~ 349 (432)
+=.+...+.+++|.....+-+
T Consensus 356 idv~~~~~~~~~~~~tr~rGm 376 (465)
T KOG2714|consen 356 IDVCSDGGHVRVWNSTRFRGM 376 (465)
T ss_pred eehhhhCCcceEEeecccccc
Confidence 333445577899987654443
No 434
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.49 E-value=12 Score=36.67 Aligned_cols=136 Identities=13% Similarity=0.054 Sum_probs=79.2
Q ss_pred CCCEEEEE--cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---------EEEEEECCCcEEEEECCCCCCCccccce
Q 014003 242 EGPWVFVG--MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---------MLFAGAQDGNILVWKGIPNTQNPFQLAA 310 (432)
Q Consensus 242 ~~~~l~~~--~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---------~l~~g~~dg~i~~wd~~~~~~~~~~~~~ 310 (432)
+..++... ....++-.|++.++.+..-.....+ -+.+.|. .-++|-.+..|.-.|.+...+ ++..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN---Ki~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN---KIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCC---ceee
Confidence 34444432 4556777778877766433323333 3444443 456777888888888776542 1111
Q ss_pred eeeccccCeEEEEE------eCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEE
Q 014003 311 LLKGHTRPVTCLAV------GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWI 382 (432)
Q Consensus 311 ~~~~h~~~v~~l~~------~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd 382 (432)
......++.-.| ...++|+|+..|-|++||.-.-+....+.+....|..+... |+++++.+. ..+.+-|
T Consensus 554 --~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d 630 (776)
T COG5167 554 --VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTD 630 (776)
T ss_pred --eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEe
Confidence 111222222222 37799999999999999965444445556666666666555 777666554 4566666
Q ss_pred cC
Q 014003 383 MT 384 (432)
Q Consensus 383 ~~ 384 (432)
++
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 54
No 435
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.23 E-value=65 Score=33.92 Aligned_cols=90 Identities=13% Similarity=0.079 Sum_probs=52.9
Q ss_pred CcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC-ceeEEEeCC-CceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCC
Q 014003 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-QSASVINLG-AEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGP 270 (432)
Q Consensus 193 ~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~-~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~ 270 (432)
-.|..|.++|+|.+|+-.|..| |.|-.+... .....+..+ ..+.| +.+.+.. .+.....
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~C----------------rt~~v~~--~~~~~~~ 145 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINC----------------RTVPVDE--RFFTSNS 145 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeE----------------EEEEech--hhccCCC
Confidence 4688888999999999888866 444444321 111111111 11111 1111111 0112344
Q ss_pred cCCEEEEEEcCC-----EEEEEECCCcEEEEECCCC
Q 014003 271 VGEVYSMVVANE-----MLFAGAQDGNILVWKGIPN 301 (432)
Q Consensus 271 ~~~v~~l~~~~~-----~l~~g~~dg~i~~wd~~~~ 301 (432)
...|..+.|+|. .|++=+.|+.+++||+...
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 567888999875 8899999999999999754
No 436
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=82.48 E-value=44 Score=31.50 Aligned_cols=42 Identities=17% Similarity=0.047 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCCCccccceeeec-cccCeEEEEEeCCEEEEEeCC
Q 014003 291 GNILVWKGIPNTQNPFQLAALLKG-HTRPVTCLAVGGKRLYSGSMD 335 (432)
Q Consensus 291 g~i~~wd~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~sgs~d 335 (432)
..+..||..+++ +..+..+.. .......+.+++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~---W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQ---WRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCc---eeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 468889987764 333333321 111222334457777777653
No 437
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.34 E-value=20 Score=39.28 Aligned_cols=132 Identities=13% Similarity=0.197 Sum_probs=77.4
Q ss_pred CCCcEEEEeCCCCceeEEEeCC-CceeeEE---E--------CCCEEEEEcCCeEEEEEccC----Cce------EeecC
Q 014003 212 RDGTVQLWDCHTGQSASVINLG-AEVGSLI---C--------EGPWVFVGMPNVVKAWHIES----SAE------FSLDG 269 (432)
Q Consensus 212 ~Dg~v~iWd~~~~~~~~~~~~~-~~~~~~~---~--------~~~~l~~~~~~~i~vwd~~~----~~~------~~~~~ 269 (432)
-|+.+.+|+.+++.....+..- ..+..+. + -..+++.+..-.|.++-+.- +.. +....
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 4778999999986655554422 2222211 1 23355566666666654322 211 12223
Q ss_pred CcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCcc-------------------ccceeee-ccccCeEEEEEe--C
Q 014003 270 PVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPF-------------------QLAALLK-GHTRPVTCLAVG--G 326 (432)
Q Consensus 270 ~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~-------------------~~~~~~~-~h~~~v~~l~~~--~ 326 (432)
....|.++....+ .++.++.||. +|.+.-.....+ ..+..+. .+.++|..|+++ -
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 3556778885555 7888888884 454321111000 0111233 567899999998 6
Q ss_pred CEEEEEeCCCeEEEEECCC
Q 014003 327 KRLYSGSMDNTIRVWDLDT 345 (432)
Q Consensus 327 ~~l~sgs~dg~I~vwd~~~ 345 (432)
+.+++-++.|+|.+||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 6789999999999999976
No 438
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=82.20 E-value=24 Score=28.13 Aligned_cols=100 Identities=13% Similarity=0.108 Sum_probs=63.8
Q ss_pred ceeeCCCCCeEEEEeCCCCc-------EEEEEEecccCcEEEEEecC-----CCCEEEEEeCCCcEEEEeCCCCceeEEE
Q 014003 163 NCVKGDECRFWHSWFCGEGF-------TMLAKLEGHKKAVSGIALPL-----RSDKLYSGSRDGTVQLWDCHTGQSASVI 230 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~-------~~~~~l~~H~~~V~~l~~~~-----~~~~l~s~s~Dg~v~iWd~~~~~~~~~~ 230 (432)
.++.+..-+.|.|++..... ..+..|. -...|++|+--+ +...|+.|+. .++..||++....+...
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyk 89 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYK 89 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhh
Confidence 55666667888888764321 2233333 356677776422 3456666665 57999999987766655
Q ss_pred eCCCceeeEEE------CCCEEEEEcCCeEEEEEccCCce
Q 014003 231 NLGAEVGSLIC------EGPWVFVGMPNVVKAWHIESSAE 264 (432)
Q Consensus 231 ~~~~~~~~~~~------~~~~l~~~~~~~i~vwd~~~~~~ 264 (432)
.....+.++.. ..+++++|.+-.|.-+|.+..+.
T Consensus 90 e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 90 EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 56666666553 56778888887887777665543
No 439
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=81.49 E-value=9.2 Score=22.95 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=24.3
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCCCceeEEEeCCC
Q 014003 202 LRSDKLYSGS-RDGTVQLWDCHTGQSASVINLGA 234 (432)
Q Consensus 202 ~~~~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~ 234 (432)
|++++|+.+. .+++|.++|..+++.+..+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~ 34 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG 34 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC
Confidence 4666665544 57899999999888888776543
No 440
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.42 E-value=77 Score=33.96 Aligned_cols=234 Identities=11% Similarity=0.037 Sum_probs=108.2
Q ss_pred eEEeeccCceeeCCCCCeEEEEeCCCCcEEE--EE------Ee--cccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 014003 155 VCYHWLSGNCVKGDECRFWHSWFCGEGFTML--AK------LE--GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG 224 (432)
Q Consensus 155 ~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~--~~------l~--~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~ 224 (432)
.|+.-.++.+..|..+|.+..|.+.+..... .. +. -++++|..+...+.-.+++.- .|+.|.++++.+-
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPEL 98 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCcc
Confidence 4677778899999999999999985431110 00 11 135777777776655555544 4667888887655
Q ss_pred ceeEEEeCCCceeeEEE-----CCC----EEEEEcCC-eE-EEEEccCCceE-eecCCcCCEEEEEEcCCEEEEEECCCc
Q 014003 225 QSASVINLGAEVGSLIC-----EGP----WVFVGMPN-VV-KAWHIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDGN 292 (432)
Q Consensus 225 ~~~~~~~~~~~~~~~~~-----~~~----~l~~~~~~-~i-~vwd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~g~~dg~ 292 (432)
+.......-........ .+. .+...... .+ ..|+-+.+... ...+......++++....+.++-.+..
T Consensus 99 ~~~~~~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~c~~~~~~~ 178 (877)
T KOG2063|consen 99 EPVPSGTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAWCGHIVCLGLKKSY 178 (877)
T ss_pred cccccccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhcccceeEEEeeccee
Confidence 44211111111111111 111 22222122 22 22333222222 111222223334444444444444333
Q ss_pred EEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceE-E-EecCCCCCcEEEEEcCCEEE
Q 014003 293 ILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAV-M-TLNGHTDAPMSLLCWDQYLL 370 (432)
Q Consensus 293 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~-~-~~~~~~~~v~~~~~~~~~l~ 370 (432)
..++...++......+...-.....++.+.-.++..++.| .|+...+-|.. |... . ++. -.....++.....|++
T Consensus 179 ~ii~~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~-kd~~gv~vd~~-G~~~~~~~l~-ws~~P~~v~~~~PYlI 255 (877)
T KOG2063|consen 179 YIINNTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLG-KDNIGVVVDLN-GIIAQRGTLV-WSEVPLSVVVESPYLI 255 (877)
T ss_pred EEEecCCCccccceeeeccccccCCCeEEEecCCceEEEc-cCceEEEEecC-CcccCCCceE-ecccchhhcccCceEE
Confidence 3333333321100011110001122333322334455555 66666666744 3321 1 111 1222344444567777
Q ss_pred EEeCCCcEEEEEcCCCCceeEEe
Q 014003 371 SCSLDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 371 s~s~dg~i~iwd~~~~~~~~~~~ 393 (432)
+-+.. .|.||+..++..++.+.
T Consensus 256 a~~~~-~veI~s~~~~qlvQSI~ 277 (877)
T KOG2063|consen 256 ALLDR-SVEIRSKLDGQLVQSIT 277 (877)
T ss_pred EEccc-cEEEEeccCHHHhhccc
Confidence 77655 99999999987776663
No 441
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=80.90 E-value=4.7 Score=24.05 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=20.8
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecC
Q 014003 328 RLYSGSMDNTIRVWDLDTLEAVMTLNG 354 (432)
Q Consensus 328 ~l~sgs~dg~I~vwd~~~~~~~~~~~~ 354 (432)
.++.++.||.|+-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 456668888888888888888877753
No 442
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=80.63 E-value=6.1 Score=23.78 Aligned_cols=22 Identities=5% Similarity=-0.145 Sum_probs=12.5
Q ss_pred EEcCCEEEEEeCCCcEEEEEcC
Q 014003 363 LCWDQYLLSCSLDNTIKVWIMT 384 (432)
Q Consensus 363 ~~~~~~l~s~s~dg~i~iwd~~ 384 (432)
...+..++.++.||.+..+|.+
T Consensus 18 ~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 18 AVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp EECTSEEEEE-TTSEEEEEETT
T ss_pred EEECCEEEEEcCCCEEEEEeCC
Confidence 4445666666666666666654
No 443
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=80.57 E-value=6.1 Score=37.98 Aligned_cols=171 Identities=15% Similarity=0.093 Sum_probs=98.7
Q ss_pred EEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCce
Q 014003 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAE 264 (432)
Q Consensus 185 ~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~ 264 (432)
+..+..--+.|..+-..|||+.|+.-+. .++.++++.+...... +. -|...+
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl------------------------~~dspg-- 264 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-KL------------------------VDDSPG-- 264 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-hh------------------------hhcCCC--
Confidence 3334455577888888999998887666 6788888875432211 00 000000
Q ss_pred EeecCCcCCEE-EEE-EcCC-EEEEEECCCcEEEE-ECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeE
Q 014003 265 FSLDGPVGEVY-SMV-VANE-MLFAGAQDGNILVW-KGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTI 338 (432)
Q Consensus 265 ~~~~~~~~~v~-~l~-~~~~-~l~~g~~dg~i~~w-d~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I 338 (432)
.....|+ ++. ..+. -+++++.||-|.-| |.+.+.......++.++-...++..+..+ .+-+++-+.+|++
T Consensus 265 ----~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L 340 (733)
T COG4590 265 ----DSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTL 340 (733)
T ss_pred ----chHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCce
Confidence 0001111 111 1222 67788888888776 66665544344455555444566666655 5668888999999
Q ss_pred EEEECCCCceEEEec-CCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCc
Q 014003 339 RVWDLDTLEAVMTLN-GHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGN 388 (432)
Q Consensus 339 ~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 388 (432)
.++.....+.+-.-. ........++.+++++++- ..|.|+++.+++..+
T Consensus 341 ~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 341 QSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred eeeecccCcceehhhhhcCcceeeeCcccchheee-cCCceEEEEecCCCC
Confidence 988765544432221 1233345555557777765 457899998877543
No 444
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=80.32 E-value=57 Score=31.31 Aligned_cols=40 Identities=13% Similarity=0.058 Sum_probs=19.3
Q ss_pred cEEEEECCCCCCCccccceeeeccccCeEEEE-EeCCEEEEEeC
Q 014003 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLA-VGGKRLYSGSM 334 (432)
Q Consensus 292 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~-~~~~~l~sgs~ 334 (432)
.+.+||..++. +.....+......-.++. .++++.+.|+.
T Consensus 190 ~v~~YD~~t~~---W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQ---WKNAGESPFLGTAGSAVVIKGNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCe---eeECCcCCCCCCCcceEEEECCEEEEEeee
Confidence 58889987764 333222221111112333 34666666664
No 445
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=80.25 E-value=4.5 Score=41.14 Aligned_cols=41 Identities=29% Similarity=0.490 Sum_probs=31.3
Q ss_pred CcEEEEEecC----CCCEEEEEeCCCcEEEEeCCCCceeEEEeCC
Q 014003 193 KAVSGIALPL----RSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (432)
Q Consensus 193 ~~V~~l~~~~----~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~ 233 (432)
..+.+++++. +..+|++.+.|+++|+||+.+++++.+....
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 3456667766 7789999999999999999999997776543
No 446
>PRK13684 Ycf48-like protein; Provisional
Probab=79.65 E-value=56 Score=30.82 Aligned_cols=146 Identities=8% Similarity=0.039 Sum_probs=78.4
Q ss_pred cCcEEEEEecCCCCEEEEEeCCCcEEE-EeCCCCceeEEEe--CCCceeeEE--ECCCEEEEEcCCeEEEEEccCCceEe
Q 014003 192 KKAVSGIALPLRSDKLYSGSRDGTVQL-WDCHTGQSASVIN--LGAEVGSLI--CEGPWVFVGMPNVVKAWHIESSAEFS 266 (432)
Q Consensus 192 ~~~V~~l~~~~~~~~l~s~s~Dg~v~i-Wd~~~~~~~~~~~--~~~~~~~~~--~~~~~l~~~~~~~i~vwd~~~~~~~~ 266 (432)
...+.++.+.+++.+++++. .|.+.. +|- .++.-.... ....+..+. .++..++++..+.+.+-..+.+....
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence 46788999999887665554 454432 221 122111122 122333333 46777788887876543344544433
Q ss_pred ecC-----CcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe-CCEEEEEeCCCeEE
Q 014003 267 LDG-----PVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIR 339 (432)
Q Consensus 267 ~~~-----~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~ 339 (432)
... ....+.++.+.++ .+++++.+|.+.. ....++. ++.......-....+.+.+. ++..+..+..|.|.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~t--W~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il 326 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKT--WEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLL 326 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCC--CeECCcCCCCCcceEEEEEeCCCceEEECCCceEE
Confidence 211 1234677888766 6667777886653 3333332 22222111222345666654 66666677788888
Q ss_pred EEE
Q 014003 340 VWD 342 (432)
Q Consensus 340 vwd 342 (432)
-|+
T Consensus 327 ~~~ 329 (334)
T PRK13684 327 RYV 329 (334)
T ss_pred Eec
Confidence 776
No 447
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=79.21 E-value=7.4 Score=23.12 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=18.3
Q ss_pred eeeeCCCCCcEEEEEeCC--CeEEEe
Q 014003 405 GGLNDPDGNPVLICSCND--DSVHLY 428 (432)
Q Consensus 405 ~~~~sp~g~~~l~sg~~D--g~I~iw 428 (432)
...|||||+.++.++..+ |.-.||
T Consensus 13 ~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 13 SPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344599999888888888 887777
No 448
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=78.88 E-value=54 Score=30.22 Aligned_cols=198 Identities=14% Similarity=0.117 Sum_probs=106.1
Q ss_pred eEEeeccCceeeCCCCCeEEEEeCC------CCcEEEEEEec-----ccCcEEEEEecCCCC------------EEEEEe
Q 014003 155 VCYHWLSGNCVKGDECRFWHSWFCG------EGFTMLAKLEG-----HKKAVSGIALPLRSD------------KLYSGS 211 (432)
Q Consensus 155 ~~~~~~~~~~~~g~~d~~i~vw~~~------~~~~~~~~l~~-----H~~~V~~l~~~~~~~------------~l~s~s 211 (432)
+.+.+....-++...-+...+||.+ ....++.++.. -....+.+.|+.... .++.++
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~t 107 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVT 107 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEe
Confidence 3444455556666777888999986 22233444442 235678888864332 367789
Q ss_pred CCCcEEEEeCCCCce---e--EEEeCC--Cce-e--eEEE--CCCEEEEE--cCCeEEEEEccCCceEee---cCC----
Q 014003 212 RDGTVQLWDCHTGQS---A--SVINLG--AEV-G--SLIC--EGPWVFVG--MPNVVKAWHIESSAEFSL---DGP---- 270 (432)
Q Consensus 212 ~Dg~v~iWd~~~~~~---~--~~~~~~--~~~-~--~~~~--~~~~l~~~--~~~~i~vwd~~~~~~~~~---~~~---- 270 (432)
+||+|.-|...-+.. . ..+... ..+ . ++.. .+.+|.+. ..+.|.++|-.-.+.... ..+
T Consensus 108 EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPa 187 (336)
T TIGR03118 108 EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPA 187 (336)
T ss_pred CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCC
Confidence 999999999643332 1 122111 111 1 1221 24566555 577888887554432110 000
Q ss_pred -cCCEEEEEEcCCE-------------EEEEECCCcEEEEECCCCCCCccccceeee--ccccCeEEEEE--------eC
Q 014003 271 -VGEVYSMVVANEM-------------LFAGAQDGNILVWKGIPNTQNPFQLAALLK--GHTRPVTCLAV--------GG 326 (432)
Q Consensus 271 -~~~v~~l~~~~~~-------------l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~--~h~~~v~~l~~--------~~ 326 (432)
-.+-.-..+...+ =+.|.--|.|-+||+... +++.+. +.-..-+.|+. ++
T Consensus 188 gyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~------l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 188 GYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ------LLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc------EEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 0011111111111 122333467888887654 233331 22222333443 36
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEecCCCCC
Q 014003 327 KRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA 358 (432)
Q Consensus 327 ~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~ 358 (432)
.+|+----||+|..||..+++.+-.+....+.
T Consensus 262 ~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~ 293 (336)
T TIGR03118 262 ALLVGNFGDGTINAYDPQSGAQLGQLLDPDNH 293 (336)
T ss_pred CeEEeecCCceeEEecCCCCceeeeecCCCCC
Confidence 67776667999999999999988888765543
No 449
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=78.63 E-value=50 Score=30.59 Aligned_cols=80 Identities=21% Similarity=0.313 Sum_probs=57.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCC---------------------eEEEEEccC
Q 014003 203 RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPN---------------------VVKAWHIES 261 (432)
Q Consensus 203 ~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------~i~vwd~~~ 261 (432)
+|++-++-+..|.+.-+|.++|+.............+...|.++++|... -|.+.|+++
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~t 291 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFAGDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNS 291 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcccceeCCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCC
Confidence 67888888999999999999998888888777777777778887766321 355667777
Q ss_pred CceE---eecCCcCCEEEEEEcCC
Q 014003 262 SAEF---SLDGPVGEVYSMVVANE 282 (432)
Q Consensus 262 ~~~~---~~~~~~~~v~~l~~~~~ 282 (432)
+..+ .+.+...+++++++-|+
T Consensus 292 G~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 292 GDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred CCEEEEEEeCCceeEEEEEEEecC
Confidence 7643 44555556666666555
No 450
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=78.08 E-value=6 Score=21.72 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=17.8
Q ss_pred CeEEEEEeCCEEEEEeCCCeEEEE
Q 014003 318 PVTCLAVGGKRLYSGSMDNTIRVW 341 (432)
Q Consensus 318 ~v~~l~~~~~~l~sgs~dg~I~vw 341 (432)
.|.+++...++++++.+.+.+|+|
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEec
Confidence 466777777777777777777776
No 451
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=77.50 E-value=13 Score=23.08 Aligned_cols=28 Identities=18% Similarity=0.314 Sum_probs=22.5
Q ss_pred CeEEEEEe---C--CEEEEEeCCCeEEEEECCC
Q 014003 318 PVTCLAVG---G--KRLYSGSMDNTIRVWDLDT 345 (432)
Q Consensus 318 ~v~~l~~~---~--~~l~sgs~dg~I~vwd~~~ 345 (432)
.|.++.|+ + .+|+.+-.-|.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 57888887 3 5777777789999999985
No 452
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.01 E-value=57 Score=33.78 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=28.0
Q ss_pred CcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCC
Q 014003 270 PVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNT 302 (432)
Q Consensus 270 ~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~ 302 (432)
..+++..+.|+.+ .|++...+|.+++|++....
T Consensus 82 ~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 82 KHGELIGMGWSDDEELICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred cCCCeeeecccCCceEEEEeccceEEEeecchhh
Confidence 3448889999998 89999999999999987653
No 453
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.78 E-value=60 Score=29.60 Aligned_cols=54 Identities=20% Similarity=0.406 Sum_probs=33.0
Q ss_pred EecCCCCEEEEEeCC-----CcEEEEeCCCC-ceeEEEe---CCCceeeEEECCCEEEEEcCC
Q 014003 199 ALPLRSDKLYSGSRD-----GTVQLWDCHTG-QSASVIN---LGAEVGSLICEGPWVFVGMPN 252 (432)
Q Consensus 199 ~~~~~~~~l~s~s~D-----g~v~iWd~~~~-~~~~~~~---~~~~~~~~~~~~~~l~~~~~~ 252 (432)
.|+|||.+|+..-.| |.|-|||...+ +.+..+. .+..-..+..+++.+++.+.|
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGG 182 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGG 182 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCc
Confidence 589999999987554 77889998743 2233332 222333445677766655443
No 454
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.73 E-value=1.1e+02 Score=33.72 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=26.2
Q ss_pred CcEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 014003 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHT 223 (432)
Q Consensus 193 ~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~ 223 (432)
.....++|+|..++++.+..+|.|+++-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 4556788999999999999999999997653
No 455
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=75.68 E-value=65 Score=29.50 Aligned_cols=56 Identities=11% Similarity=0.152 Sum_probs=39.1
Q ss_pred CCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEe------CCCcEEEEeCCCCc
Q 014003 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGS------RDGTVQLWDCHTGQ 225 (432)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s------~Dg~v~iWd~~~~~ 225 (432)
.+.-|++||.++. +=...-.+-.+.|++|.|..+.++++.|. ....+..||+.+..
T Consensus 14 ~C~~lC~yd~~~~-qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 14 PCPGLCLYDTDNS-QWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CCCEEEEEECCCC-EeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 5777999998665 22222234568899999987777777764 35567888887664
No 456
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=74.08 E-value=92 Score=32.40 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=28.9
Q ss_pred cCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCce
Q 014003 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS 226 (432)
Q Consensus 192 ~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~ 226 (432)
...++++.-+|.++.+++++.||+|++++......
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q 48 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ 48 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccch
Confidence 35567777789999999999999999999865543
No 457
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=74.04 E-value=2.2 Score=44.35 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=34.3
Q ss_pred eCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc-C--CEEEEEeCCCcEEEEEcCC
Q 014003 325 GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-D--QYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 325 ~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~-~--~~l~s~s~dg~i~iwd~~~ 385 (432)
+.-++..+-.++.|++....+... .-+.+|...++.+++. . ..|..-|-||++..|...+
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~d 256 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISD 256 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecC
Confidence 356677777888888877655333 4445577776666554 1 1233334455555554443
No 458
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=74.01 E-value=11 Score=20.74 Aligned_cols=25 Identities=8% Similarity=0.295 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCEEEEEECCCcEEEE
Q 014003 272 GEVYSMVVANEMLFAGAQDGNILVW 296 (432)
Q Consensus 272 ~~v~~l~~~~~~l~~g~~dg~i~~w 296 (432)
..|.+++..+.+++++...+.+++|
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEec
Confidence 3578888888899999999999887
No 459
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=73.44 E-value=0.52 Score=45.34 Aligned_cols=138 Identities=17% Similarity=0.258 Sum_probs=86.7
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEE
Q 014003 197 GIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYS 276 (432)
Q Consensus 197 ~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~ 276 (432)
...|-+.+.-++.++.+..+..||-. ++.... ...++....
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le--------------------------------------~n~tg~ald 79 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKA-GQVILE--------------------------------------LNPTGKALD 79 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhh-cceecc--------------------------------------cCCchhHhh
Confidence 34566666667778888888888854 222211 122333444
Q ss_pred EEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEE
Q 014003 277 MVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMT 351 (432)
Q Consensus 277 l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~ 351 (432)
++|+.+ .++.+-..+.+.+||+.+....+ +..-..|..+. +.|+ ...++.+...|.+.|++..+.+.+-.
T Consensus 80 m~wDkegdvlavlAek~~piylwd~n~eytqq---LE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv 154 (615)
T KOG2247|consen 80 MAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ---LESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV 154 (615)
T ss_pred hhhccccchhhhhhhcCCCeeechhhhhhHHH---HhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhh
Confidence 555543 56667788999999998764211 11111122222 4555 56677788899999999888776666
Q ss_pred ecCCCCCcEEEEEc-CCEEEEEeCCCcE
Q 014003 352 LNGHTDAPMSLLCW-DQYLLSCSLDNTI 378 (432)
Q Consensus 352 ~~~~~~~v~~~~~~-~~~l~s~s~dg~i 378 (432)
.-.|...++++++. .++.+.++.|..+
T Consensus 155 ~Gkh~RRgtq~av~lEd~vil~dcd~~L 182 (615)
T KOG2247|consen 155 MGKHQRRGTQIAVTLEDYVILCDCDNTL 182 (615)
T ss_pred hcccccceeEEEecccceeeecCcHHHH
Confidence 65588888888887 6677777666443
No 460
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=73.09 E-value=9.4 Score=22.91 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=18.9
Q ss_pred EEEEeCCEEEEEeCCCeEEEEECCC
Q 014003 321 CLAVGGKRLYSGSMDNTIRVWDLDT 345 (432)
Q Consensus 321 ~l~~~~~~l~sgs~dg~I~vwd~~~ 345 (432)
+++..+..++.++.||.++.+|.++
T Consensus 16 ~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TTSEEEEEETT-
T ss_pred CCEEECCEEEEEcCCCEEEEEeCCC
Confidence 3466788999999999999999864
No 461
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=72.87 E-value=47 Score=32.27 Aligned_cols=99 Identities=15% Similarity=0.270 Sum_probs=49.2
Q ss_pred CCCeEEEEECCCCceEEEecCCCC--CcEEEEEc-----CCEEEEEeCCCcEEEEEcCCCCc-----eeEEeecc---C-
Q 014003 334 MDNTIRVWDLDTLEAVMTLNGHTD--APMSLLCW-----DQYLLSCSLDNTIKVWIMTEEGN-----LEVAYTHN---E- 397 (432)
Q Consensus 334 ~dg~I~vwd~~~~~~~~~~~~~~~--~v~~~~~~-----~~~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~~---~- 397 (432)
.-.++.+||+.+.+.++++.--.. ....+.|. ..-++.+...++|..|--..... +..+.... .
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 346899999999999999875443 24566665 12344444555555554322221 11111110 0
Q ss_pred --C-------cceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 398 --D-------HGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 398 --~-------~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
. +..+......|.|.+++.++.=.+|.||.||+..
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 0 0122233333899997777777899999999863
No 462
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.78 E-value=98 Score=30.22 Aligned_cols=112 Identities=11% Similarity=0.019 Sum_probs=65.7
Q ss_pred cccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC----C-CceeeEEE-CCCEEEEEcCCeEEEEE--ccC
Q 014003 190 GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL----G-AEVGSLIC-EGPWVFVGMPNVVKAWH--IES 261 (432)
Q Consensus 190 ~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~----~-~~~~~~~~-~~~~l~~~~~~~i~vwd--~~~ 261 (432)
..+++|.+|.|++|.+.||.--.|++|.+.+....+......+ + ..+..+.+ ++.-++.-.+..+-+|. .+.
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pek 143 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEK 143 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhh
Confidence 4467999999999999999999999999999854433222221 1 11333332 33334433444444443 333
Q ss_pred CceEeecCCcCCEEEEEEcCC----EEEEEECCCcEEEEECCCC
Q 014003 262 SAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPN 301 (432)
Q Consensus 262 ~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~~wd~~~~ 301 (432)
......+.+...|.-..|.++ +++++-..+++.=+.++++
T Consensus 144 rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 144 RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 444445666777777777777 3333334455444544443
No 463
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=72.04 E-value=84 Score=29.14 Aligned_cols=154 Identities=10% Similarity=0.061 Sum_probs=0.0
Q ss_pred EEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC-ceeEEEeCCCceeeEE--ECCCEEEEEcCCeEEEEE-cc
Q 014003 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-QSASVINLGAEVGSLI--CEGPWVFVGMPNVVKAWH-IE 260 (432)
Q Consensus 185 ~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~-~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~vwd-~~ 260 (432)
......-.+.+..+.-+++|++++.++.-....-||.-.. =..........+..+. +++.+..+...+.++.=+ ..
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPD 216 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TT
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCC
Q ss_pred CCceEee----cCCcCC-EEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe-CCEEEEEe
Q 014003 261 SSAEFSL----DGPVGE-VYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGS 333 (432)
Q Consensus 261 ~~~~~~~----~~~~~~-v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs 333 (432)
....... ....+. +..+++.++ .+.+++..| ..+.....++. ++.......-....+.+.|. .+.-++-+
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l~~S~DgGkt--W~~~~~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TLLVSTDGGKT--WQKDRVGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--EEEESSTTSS---EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cEEEeCCCCcc--ceECccccCCCCceEEEEEcCCCceEEEC
Q ss_pred CCCeEEEE
Q 014003 334 MDNTIRVW 341 (432)
Q Consensus 334 ~dg~I~vw 341 (432)
.+|.|.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
No 464
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=71.89 E-value=95 Score=34.15 Aligned_cols=146 Identities=19% Similarity=0.166 Sum_probs=80.3
Q ss_pred EEEEEE---------CCCcEEEEECCC-----CCCC-cccccee-eeccccCeEEEEEeCCEEEEEeCCCeEEEEEC-CC
Q 014003 283 MLFAGA---------QDGNILVWKGIP-----NTQN-PFQLAAL-LKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDL-DT 345 (432)
Q Consensus 283 ~l~~g~---------~dg~i~~wd~~~-----~~~~-~~~~~~~-~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~-~~ 345 (432)
++++|. ..|.++++|+-. ++.. ..++... .+...++|..++==..+|+++. ..+|.||++ +.
T Consensus 1048 ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~-GqKI~v~~l~r~ 1126 (1366)
T KOG1896|consen 1048 YLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQ-GQKIIVRKLDRD 1126 (1366)
T ss_pred eEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEcc-CcEEEEEEeccC
Confidence 777775 248899999754 1110 0111111 1234556665543344455443 457999999 44
Q ss_pred CceEE-EecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEee-ccCCcceEEEeeeeCCCCCcEEEEEeCCC
Q 014003 346 LEAVM-TLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYT-HNEDHGVLALGGLNDPDGNPVLICSCNDD 423 (432)
Q Consensus 346 ~~~~~-~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg 423 (432)
...+- .|..-.-.+.++..-.++|+.|.--..|.+.-.........+.. ......+.+..+.-+ .++..++++..|+
T Consensus 1127 ~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVd-g~~L~flvsDa~r 1205 (1366)
T KOG1896|consen 1127 SELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVD-GSNLSFLVSDADR 1205 (1366)
T ss_pred CcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEc-CCeeEEEEEcCCC
Confidence 44322 22222233444444578899998888888877765443333333 223333333333332 3344788889999
Q ss_pred eEEEeeC
Q 014003 424 SVHLYEL 430 (432)
Q Consensus 424 ~I~iwdl 430 (432)
+|++|-.
T Consensus 1206 Ni~vy~Y 1212 (1366)
T KOG1896|consen 1206 NIHVYMY 1212 (1366)
T ss_pred cEEEEEe
Confidence 9998754
No 465
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.44 E-value=63 Score=35.23 Aligned_cols=99 Identities=11% Similarity=0.013 Sum_probs=61.8
Q ss_pred EEECCCcEEEEECCCCCCCccccceeeeccc------cCeEEEEEe---CCEEEEEeCCCeEEEEECCCCce-EEEecCC
Q 014003 286 AGAQDGNILVWKGIPNTQNPFQLAALLKGHT------RPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEA-VMTLNGH 355 (432)
Q Consensus 286 ~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~------~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~-~~~~~~~ 355 (432)
..+.+-.|..||++.-.....+....+..|. .-..++.|+ ....+....|+.|+|..+..... +.++ ..
T Consensus 119 ~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~ 197 (1405)
T KOG3630|consen 119 STSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PV 197 (1405)
T ss_pred EecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-Cc
Confidence 3444557889998764332111122222222 223456666 45567788899999988754333 2232 24
Q ss_pred CCCcEEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 014003 356 TDAPMSLLCW--DQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 356 ~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~ 385 (432)
....++++|+ |..++.|-..|++.-|...-
T Consensus 198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred ccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 4567888888 89999999999999886543
No 466
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=70.99 E-value=1e+02 Score=29.61 Aligned_cols=183 Identities=16% Similarity=0.234 Sum_probs=106.4
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCce-eeEE----ECCC---EEEEEc----CCeEEEEEccC--CceEee
Q 014003 202 LRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV-GSLI----CEGP---WVFVGM----PNVVKAWHIES--SAEFSL 267 (432)
Q Consensus 202 ~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~-~~~~----~~~~---~l~~~~----~~~i~vwd~~~--~~~~~~ 267 (432)
|...+++....++-+.+||++ |+.+..+..+... ..+. ..+. +++++. .+.|++|.+.. +.....
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 456788888889999999997 6666666543221 1221 2333 334442 25799997753 333222
Q ss_pred c-------CCcCCEEEEEEc--CC----EEEEEECCCcEEEEECCCCCC--CccccceeeeccccCeEEEEEe--CCEEE
Q 014003 268 D-------GPVGEVYSMVVA--NE----MLFAGAQDGNILVWKGIPNTQ--NPFQLAALLKGHTRPVTCLAVG--GKRLY 330 (432)
Q Consensus 268 ~-------~~~~~v~~l~~~--~~----~l~~g~~dg~i~~wd~~~~~~--~~~~~~~~~~~h~~~v~~l~~~--~~~l~ 330 (432)
. .....++.++.. +. ++++...+|.+..|.+..... ...++++.+... ..+-.+..+ ...|+
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~-sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG-SQPEGCVVDDETGRLY 223 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S-S-EEEEEEETTTTEEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC-CcceEEEEecccCCEE
Confidence 1 122346666653 22 788889999999998864322 123556667643 356777777 67899
Q ss_pred EEeCCCeEEEEECCC-----CceEEEecC--CCCCcEEEEEc----C-CEEEEE-eCCCcEEEEEcCCC
Q 014003 331 SGSMDNTIRVWDLDT-----LEAVMTLNG--HTDAPMSLLCW----D-QYLLSC-SLDNTIKVWIMTEE 386 (432)
Q Consensus 331 sgs~dg~I~vwd~~~-----~~~~~~~~~--~~~~v~~~~~~----~-~~l~s~-s~dg~i~iwd~~~~ 386 (432)
.+-++.-|.-|+.+. ++.+....+ ....+-.+... + .||+++ -.+++..||+....
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 999998888888762 223333332 33456666654 2 355544 45788999998764
No 467
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.92 E-value=0.84 Score=43.43 Aligned_cols=26 Identities=19% Similarity=0.512 Sum_probs=15.8
Q ss_pred eeeeeeecCc-cCCCCCccccccCCCC
Q 014003 59 VLCVYFLEGR-CNRNPCRFAHTESQTL 84 (432)
Q Consensus 59 ~~~~~~~~~~-~~~~p~~~l~~~~~~~ 84 (432)
.-||||.-+. |...-|-|-|.-+|..
T Consensus 62 ~~CYwe~~p~gC~k~~CgfRH~~pPLk 88 (667)
T KOG4791|consen 62 IPCYWENQPTGCQKLNCGFRHNRPPLK 88 (667)
T ss_pred ccceeecCCCccCCCccccccCCCchh
Confidence 5566666666 6666666666544443
No 468
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.78 E-value=1.1e+02 Score=30.44 Aligned_cols=24 Identities=8% Similarity=-0.018 Sum_probs=15.9
Q ss_pred eEEEEEe--CCEEEEEeCCCeEEEEE
Q 014003 319 VTCLAVG--GKRLYSGSMDNTIRVWD 342 (432)
Q Consensus 319 v~~l~~~--~~~l~sgs~dg~I~vwd 342 (432)
|..+..+ |..++..+.+|.+.++=
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEc
Confidence 4444444 88888888888665543
No 469
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=69.90 E-value=29 Score=30.10 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred EEEEccCCceEeecCCcCCEEEEEEcC-CEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEE
Q 014003 255 KAWHIESSAEFSLDGPVGEVYSMVVAN-EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYS 331 (432)
Q Consensus 255 ~vwd~~~~~~~~~~~~~~~v~~l~~~~-~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s 331 (432)
++++..............+...+...+ +.|+.+...+.|.+|++.... .++...+..- +.|..+.++ |+++++
T Consensus 1 ~v~~~H~F~sQ~v~~~~~EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~---~~~~~~F~Tv-~~V~~l~y~~~GDYlvT 76 (215)
T PF14761_consen 1 RVYNCHPFGSQNVVPCEQEPTAVCCGGPDALFVAASGCKVEVYDLEQEE---CPLLCTFSTV-GRVLQLVYSEAGDYLVT 76 (215)
T ss_pred CeEEecccCCceeeccccCcceeeccCCceEEEEcCCCEEEEEEcccCC---CceeEEEcch-hheeEEEeccccceEEE
No 470
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=69.08 E-value=42 Score=32.78 Aligned_cols=29 Identities=34% Similarity=0.621 Sum_probs=22.5
Q ss_pred cCeEEEEEe--CCEEEEEeCCCeEEEEECCC
Q 014003 317 RPVTCLAVG--GKRLYSGSMDNTIRVWDLDT 345 (432)
Q Consensus 317 ~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~ 345 (432)
..|.++..+ .+.+++.+.+|.|.+||+..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 348888887 77999999999999999974
No 471
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=68.68 E-value=17 Score=21.59 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=23.5
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEEeCCCc
Q 014003 206 KLYSGSRDGTVQLWDCHTGQSASVINLGAE 235 (432)
Q Consensus 206 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~ 235 (432)
.++.++.||.|...|.++|+.+-.++....
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSSG
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCCC
Confidence 456668899999999999998877765443
No 472
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=68.47 E-value=13 Score=20.89 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=19.8
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEE
Q 014003 205 DKLYSGSRDGTVQLWDCHTGQSASV 229 (432)
Q Consensus 205 ~~l~s~s~Dg~v~iWd~~~~~~~~~ 229 (432)
..++.++.+|.+...|.++|+..-.
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 3677888899999999988876643
No 473
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.42 E-value=2e+02 Score=32.08 Aligned_cols=144 Identities=15% Similarity=0.202 Sum_probs=80.5
Q ss_pred CCCEEEEEcCCeEEEEEccCCceE-eecCCcCCEEEEEE---cCC-------EEEEEECCCcEEEEECCCCC----CCcc
Q 014003 242 EGPWVFVGMPNVVKAWHIESSAEF-SLDGPVGEVYSMVV---ANE-------MLFAGAQDGNILVWKGIPNT----QNPF 306 (432)
Q Consensus 242 ~~~~l~~~~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~---~~~-------~l~~g~~dg~i~~wd~~~~~----~~~~ 306 (432)
.=..+....|+.+.+|+.+++... ...+....|..+.. .|+ ++++-+.--.|.++-+.... ...+
T Consensus 89 eI~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 89 EIGRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred hhcceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccc
Confidence 334556678999999999985543 34444455554433 222 44444445556666443222 1111
Q ss_pred ccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEE--ECCCC---c-e----------------EEEec-CCCCCcEE
Q 014003 307 QLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVW--DLDTL---E-A----------------VMTLN-GHTDAPMS 361 (432)
Q Consensus 307 ~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vw--d~~~~---~-~----------------~~~~~-~~~~~v~~ 361 (432)
.-...+......|.|+... |+.+++| .||.|+=. ....+ + + +..+. .+..+|..
T Consensus 169 ~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q 247 (1311)
T KOG1900|consen 169 NTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ 247 (1311)
T ss_pred ccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence 1111222334567788753 6666655 55544321 11111 1 1 12223 45678889
Q ss_pred EEEc--CCEEEEEeCCCcEEEEEcCCC
Q 014003 362 LLCW--DQYLLSCSLDNTIKVWIMTEE 386 (432)
Q Consensus 362 ~~~~--~~~l~s~s~dg~i~iwd~~~~ 386 (432)
+..+ -+.+.+=+..|+|.+||+...
T Consensus 248 i~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 248 ITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eEeccccceeeeeccCceEEEEEccCC
Confidence 8888 367888899999999999863
No 474
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=67.79 E-value=1.1e+02 Score=28.80 Aligned_cols=40 Identities=13% Similarity=-0.061 Sum_probs=19.8
Q ss_pred CeEEEEECCCCc--eEEEecC-CCCCcEEEEEcCCEEEEEeCC
Q 014003 336 NTIRVWDLDTLE--AVMTLNG-HTDAPMSLLCWDQYLLSCSLD 375 (432)
Q Consensus 336 g~I~vwd~~~~~--~~~~~~~-~~~~v~~~~~~~~~l~s~s~d 375 (432)
..+.+||..+.+ .+..+.. .......+...+++.+.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 468889987643 2222221 111222233346677777653
No 475
>PRK10115 protease 2; Provisional
Probab=67.67 E-value=1.7e+02 Score=30.85 Aligned_cols=272 Identities=8% Similarity=-0.041 Sum_probs=0.0
Q ss_pred CCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCCCCe
Q 014003 93 PPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECRF 172 (432)
Q Consensus 93 v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 172 (432)
+..+.+||||++||-+...+ |++.-.
T Consensus 129 l~~~~~Spdg~~la~~~d~~------------------------------------------------------G~E~~~ 154 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFL------------------------------------------------------SRRQYG 154 (686)
T ss_pred EeEEEECCCCCEEEEEecCC------------------------------------------------------CcEEEE
Q ss_pred EEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCC------cEEEEeCCCC--ceeEEEeCCCceeeEEE---
Q 014003 173 WHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDG------TVQLWDCHTG--QSASVINLGAEVGSLIC--- 241 (432)
Q Consensus 173 i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg------~v~iWd~~~~--~~~~~~~~~~~~~~~~~--- 241 (432)
|++-|+.++......+.+-. ..++|.+|++.|+-...+. .|..+++.++ +....+........+..
T Consensus 155 l~v~d~~tg~~l~~~i~~~~---~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s 231 (686)
T PRK10115 155 IRFRNLETGNWYPELLDNVE---PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKT 231 (686)
T ss_pred EEEEECCCCCCCCccccCcc---eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEc
Q ss_pred -CCCEEEEE----cCCeEEEEE--ccCCc-eEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCcccccee
Q 014003 242 -EGPWVFVG----MPNVVKAWH--IESSA-EFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAAL 311 (432)
Q Consensus 242 -~~~~l~~~----~~~~i~vwd--~~~~~-~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~ 311 (432)
++.+++.. .++.+.+++ ...+. .............+.-..+ ++.+-.....-++..+.-.....++.+..
T Consensus 232 ~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~ 311 (686)
T PRK10115 232 TSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIP 311 (686)
T ss_pred CCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEEC
Q ss_pred eeccccCeEEEEEe-CCEEEEEeCCCeEEEEECCC-CceEEEec-CCCCCcEEEEEc-----CCEEEEEeC---CCcEEE
Q 014003 312 LKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDT-LEAVMTLN-GHTDAPMSLLCW-----DQYLLSCSL---DNTIKV 380 (432)
Q Consensus 312 ~~~h~~~v~~l~~~-~~~l~sgs~dg~I~vwd~~~-~~~~~~~~-~~~~~v~~~~~~-----~~~l~s~s~---dg~i~i 380 (432)
- .....+..+.+. +..+++...+|.-+++-+.. +..+..+. .....+..+... +.++++.++ -+.+..
T Consensus 312 ~-~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~ 390 (686)
T PRK10115 312 P-RENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFE 390 (686)
T ss_pred C-CCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEE
Q ss_pred EEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEe
Q 014003 381 WIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLY 428 (432)
Q Consensus 381 wd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iw 428 (432)
+|+.+++................+.... +-+.+.+.-.|.+|
T Consensus 391 ~d~~~~~~~~l~~~~~~~~~~~~~~~e~------v~~~s~DG~~Ip~~ 432 (686)
T PRK10115 391 LDMDTGERRVLKQTEVPGFDAANYRSEH------LWITARDGVEVPVS 432 (686)
T ss_pred EECCCCcEEEEEecCCCCcCccccEEEE------EEEECCCCCEEEEE
No 476
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=67.21 E-value=1.2e+02 Score=29.04 Aligned_cols=40 Identities=10% Similarity=-0.010 Sum_probs=21.4
Q ss_pred EEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCC
Q 014003 293 ILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD 335 (432)
Q Consensus 293 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~d 335 (432)
+.+||..+++ ++....+........++.+++..++.|+..
T Consensus 314 ~e~yd~~~~~---W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGK---WQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCc---ccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 4578877654 333333322222233556667777777754
No 477
>PLN02193 nitrile-specifier protein
Probab=67.10 E-value=1.4e+02 Score=29.72 Aligned_cols=66 Identities=8% Similarity=-0.104 Sum_probs=37.4
Q ss_pred EEEeCCEEEEEeCC----CeEEEEECCCCceEEEec-----CCCCCcEEEEEcCCEEEEEeCC--------------CcE
Q 014003 322 LAVGGKRLYSGSMD----NTIRVWDLDTLEAVMTLN-----GHTDAPMSLLCWDQYLLSCSLD--------------NTI 378 (432)
Q Consensus 322 l~~~~~~l~sgs~d----g~I~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~s~s~d--------------g~i 378 (432)
..++++.++.++.+ ..+.+||+.+.+-...-. .......++.+.+++++.|+.+ +.+
T Consensus 325 ~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv 404 (470)
T PLN02193 325 EVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGT 404 (470)
T ss_pred EEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccE
Confidence 34567777777755 468999988765422211 0111122333346677777753 247
Q ss_pred EEEEcCCCC
Q 014003 379 KVWIMTEEG 387 (432)
Q Consensus 379 ~iwd~~~~~ 387 (432)
.++|+.+.+
T Consensus 405 ~~~D~~t~~ 413 (470)
T PLN02193 405 FALDTETLQ 413 (470)
T ss_pred EEEEcCcCE
Confidence 788877654
No 478
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=65.03 E-value=29 Score=29.07 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=25.8
Q ss_pred CcEEEEEecCCC------CEEEEEeCCCcEEEEeCCC
Q 014003 193 KAVSGIALPLRS------DKLYSGSRDGTVQLWDCHT 223 (432)
Q Consensus 193 ~~V~~l~~~~~~------~~l~s~s~Dg~v~iWd~~~ 223 (432)
..|.+++|||.| -+|+....++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 489999999954 4688889999999998764
No 479
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.73 E-value=65 Score=35.36 Aligned_cols=222 Identities=13% Similarity=0.043 Sum_probs=101.8
Q ss_pred eecCCCceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccC----cEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 014003 148 ERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKK----AVSGIALPLRSDKLYSGSRDGTVQLWDCHT 223 (432)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~----~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~ 223 (432)
..+.+...++.+....++-|..+|.|++|-... +.....|.. .+..+-+-...........+..+.+|....
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~----ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ 109 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG----VEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKI 109 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEecccc----eEEEeccccccchhhhheeeeecccccceeecccceeeecccc
Confidence 334556889999999999999999999997632 222222322 122222222222233334445555555432
Q ss_pred CceeEEEeCCCceeeEEECCCEE-EEEcCCeEEEEEccCCceEee--cCCcCCE--EEEEEcCC---EEEEEECCCcEEE
Q 014003 224 GQSASVINLGAEVGSLICEGPWV-FVGMPNVVKAWHIESSAEFSL--DGPVGEV--YSMVVANE---MLFAGAQDGNILV 295 (432)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~i~vwd~~~~~~~~~--~~~~~~v--~~l~~~~~---~l~~g~~dg~i~~ 295 (432)
.. .........+...+.... ..+..+.+++++..-.....+ ......- .-....+. .......+- .+
T Consensus 110 ~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--~~ 184 (993)
T KOG1983|consen 110 KT---GVFLKQEITSFVTDPPPDWLIGENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDT--VL 184 (993)
T ss_pred cc---eeecCCcceeccCCCCcchhcccCceeeEeeechhhhccceeccccccccceeeeeccceeeecccccccc--ce
Confidence 21 112222222333222211 222556666666543332111 1100000 00000000 000000000 00
Q ss_pred EECCCCCCCccccceeeeccccCeEEEEEe-CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeC
Q 014003 296 WKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSL 374 (432)
Q Consensus 296 wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~ 374 (432)
+-+. .....+.-+..++.+..+. ..-.+.+..-+.+-+|+.........+....... ..++..++++..
T Consensus 185 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~h~ 254 (993)
T KOG1983|consen 185 ISLP-------DAYLGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE---SRDGSHFVSYHT 254 (993)
T ss_pred eecc-------cccccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC---ccCCceEEEEEe
Confidence 1000 0012233345555555554 4445555566777777755444333333222212 445889999999
Q ss_pred CCcEEEEEcCCCCc
Q 014003 375 DNTIKVWIMTEEGN 388 (432)
Q Consensus 375 dg~i~iwd~~~~~~ 388 (432)
||.+..||...+..
T Consensus 255 Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 255 DGSYAFWDVSSGKL 268 (993)
T ss_pred cCCEEeeecCCCce
Confidence 99999999987643
No 480
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=63.75 E-value=1.7e+02 Score=29.43 Aligned_cols=224 Identities=11% Similarity=0.058 Sum_probs=113.3
Q ss_pred ceeeCCCCCeEEEEeCCCCc-EEEEEEecc-cCcEEEEEecCCC-CEEEEEeC--CCcEEEEeCCCCceeEEEeCCCcee
Q 014003 163 NCVKGDECRFWHSWFCGEGF-TMLAKLEGH-KKAVSGIALPLRS-DKLYSGSR--DGTVQLWDCHTGQSASVINLGAEVG 237 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~-~~~~~l~~H-~~~V~~l~~~~~~-~~l~s~s~--Dg~v~iWd~~~~~~~~~~~~~~~~~ 237 (432)
.+.-+.++|.+..-.+.... ......-+. ....+++++-.++ .+|+.||. |+.+..|....-+.+..+..-+++.
T Consensus 224 ~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~Pi~ 303 (504)
T PF10433_consen 224 RILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNWGPIV 303 (504)
T ss_dssp EEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE----SEE
T ss_pred EEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCcCCcc
Confidence 56667778887777664432 122222233 5556677765444 47777776 5555566655555666666666766
Q ss_pred eEEE-------CC------CEEEEE---cCCeEEEEEccCC---ceE---eecCCcCCEEEEEEcC--C-EEEEEECCCc
Q 014003 238 SLIC-------EG------PWVFVG---MPNVVKAWHIESS---AEF---SLDGPVGEVYSMVVAN--E-MLFAGAQDGN 292 (432)
Q Consensus 238 ~~~~-------~~------~~l~~~---~~~~i~vwd~~~~---~~~---~~~~~~~~v~~l~~~~--~-~l~~g~~dg~ 292 (432)
.+.. .. ++++++ .+|.+++..-.-+ ... .+.+ ...++.+.... + +++.+..+.
T Consensus 304 D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S~~~~- 381 (504)
T PF10433_consen 304 DFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVLSFPNE- 381 (504)
T ss_dssp EEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEEEESSE-
T ss_pred ceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEEEcCCc-
Confidence 5542 11 344544 5678887743211 122 1222 44556665544 3 666655544
Q ss_pred EEEEECCC-CCCCccccce--eeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecC-CCCCcEEEEEcCCE
Q 014003 293 ILVWKGIP-NTQNPFQLAA--LLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNG-HTDAPMSLLCWDQY 368 (432)
Q Consensus 293 i~~wd~~~-~~~~~~~~~~--~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~ 368 (432)
-+++.+.. ......+.+. .+......+.+-.+.++.++=-+.. .|++.+...++....+.. ....|.+.+..+.+
T Consensus 382 T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~~~~ 460 (504)
T PF10433_consen 382 TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVAASINDPQ 460 (504)
T ss_dssp EEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SEEEESSSE
T ss_pred eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEEEEECCCE
Confidence 34555531 1110010010 1111122222222335555555544 488999888888776643 44457777777888
Q ss_pred EEEEeCCCcEEEEEcCCCCce
Q 014003 369 LLSCSLDNTIKVWIMTEEGNL 389 (432)
Q Consensus 369 l~s~s~dg~i~iwd~~~~~~~ 389 (432)
++.+..++.+..+.+......
T Consensus 461 v~v~~~~~~~~~~~~~~~~~~ 481 (504)
T PF10433_consen 461 VLVALSGGELVYFELDDNKIS 481 (504)
T ss_dssp EEEEE-TTEEEEEEEETTEEE
T ss_pred EEEEEeCCcEEEEEEECCcee
Confidence 888888999999998776543
No 481
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=63.64 E-value=1.5e+02 Score=28.92 Aligned_cols=172 Identities=11% Similarity=0.133 Sum_probs=91.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeEEEe---CCCceeeEEECCCEEEEEcCCeEEEEEccCC------------------
Q 014003 204 SDKLYSGSRDGTVQLWDCHTGQSASVIN---LGAEVGSLICEGPWVFVGMPNVVKAWHIESS------------------ 262 (432)
Q Consensus 204 ~~~l~s~s~Dg~v~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~------------------ 262 (432)
-.++..=+.||++.+++-+.-...+.++ .++++..+.....+++++.+..+..|....-
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~ 224 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDIS 224 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccccc
Confidence 3678888999999999977654444333 4455555555666666666767776653210
Q ss_pred --ceEe---ecCCcCCEEEEEE---cCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEE-E------e
Q 014003 263 --AEFS---LDGPVGEVYSMVV---ANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLA-V------G 325 (432)
Q Consensus 263 --~~~~---~~~~~~~v~~l~~---~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~-~------~ 325 (432)
+... ...-...+..+.. +.. .+++-+ ..++...+... . .+..+.+. ..-.|+. + .
T Consensus 225 ~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~G-~---l~~~krLd---~~p~~~~~Y~~~~~~~ 296 (418)
T PF14727_consen 225 SGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDNG-S---LRFQKRLD---YNPSCFCPYRVPWYNE 296 (418)
T ss_pred ccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCCC-e---EEEEEecC---CceeeEEEEEeecccC
Confidence 1000 0001112222222 111 222222 23444444322 1 12222232 2222322 1 1
Q ss_pred C---CEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc-----CCEEEEEeCCCcEEEEEcCCC
Q 014003 326 G---KRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-----DQYLLSCSLDNTIKVWIMTEE 386 (432)
Q Consensus 326 ~---~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~s~s~dg~i~iwd~~~~ 386 (432)
+ ..++.++.++++.||. ..+++..-.....+ .++... ...|++-+.+|.+.+-=+-+.
T Consensus 297 ~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~P-Val~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 297 PSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVP-VALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred CCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCC-EEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 2 2589999999999997 45566655543333 344433 578999999999988766554
No 482
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=63.51 E-value=1.3e+02 Score=27.94 Aligned_cols=199 Identities=18% Similarity=0.245 Sum_probs=110.4
Q ss_pred cEEEEEecCCCCEEEEEeCCCcEEEEeCC------CCc-eeEEEeC------CCceeeEEE---------------CCCE
Q 014003 194 AVSGIALPLRSDKLYSGSRDGTVQLWDCH------TGQ-SASVINL------GAEVGSLIC---------------EGPW 245 (432)
Q Consensus 194 ~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~------~~~-~~~~~~~------~~~~~~~~~---------------~~~~ 245 (432)
.-+.|+++|.+.+-++...-+...+||.. ..+ .+-.+.. ......+.. ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35678999999888888888899999986 121 2222221 011122221 1336
Q ss_pred EEEEcCCeEEEEEccCCce------Eeec-CCcCCEE-EEEEc----CC-EEEEEECCCcEEEEECCCCCCCcccccee-
Q 014003 246 VFVGMPNVVKAWHIESSAE------FSLD-GPVGEVY-SMVVA----NE-MLFAGAQDGNILVWKGIPNTQNPFQLAAL- 311 (432)
Q Consensus 246 l~~~~~~~i~vwd~~~~~~------~~~~-~~~~~v~-~l~~~----~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~- 311 (432)
|.++.+|+|.-|...-... +... ...+.|+ .+++. .+ +.++--..++|.+||-.-.... ....
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~---~~g~F 180 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP---LPGSF 180 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc---CCCCc
Confidence 8889999999998633222 2222 2234443 44444 23 4555567889999985543210 0000
Q ss_pred ----eeccccCeEEEEEeCCEE-------------EEEeCCCeEEEEECCCCceEEEecC--CCCCcEEEEE--------
Q 014003 312 ----LKGHTRPVTCLAVGGKRL-------------YSGSMDNTIRVWDLDTLEAVMTLNG--HTDAPMSLLC-------- 364 (432)
Q Consensus 312 ----~~~h~~~v~~l~~~~~~l-------------~sgs~dg~I~vwd~~~~~~~~~~~~--~~~~v~~~~~-------- 364 (432)
+...-.+..-..+.++++ +.|.--|.|-+||+. ++.++.+.. .-.....++.
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 111111111111112222 233345789999975 788887742 2223333433
Q ss_pred cCCEEEEEeCCCcEEEEEcCCCCceeEEeecc
Q 014003 365 WDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN 396 (432)
Q Consensus 365 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 396 (432)
++.+|+---.||+|..||..+++.+..+....
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeecCCC
Confidence 25677777779999999999888776665533
No 483
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=63.16 E-value=59 Score=29.20 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=48.0
Q ss_pred cccCeEEEEE---e------CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc------CCEEEEEeCCCcEE
Q 014003 315 HTRPVTCLAV---G------GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW------DQYLLSCSLDNTIK 379 (432)
Q Consensus 315 h~~~v~~l~~---~------~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~------~~~l~s~s~dg~i~ 379 (432)
+...|+||+- + -..|+.|+++|.|.|.|.+....+.++.-..-++ .+... +-.|+.++.||.|+
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~iy 253 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKIY 253 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEEE
Confidence 3456788765 1 4579999999999999999888888876554443 33333 34688889999887
Q ss_pred EE
Q 014003 380 VW 381 (432)
Q Consensus 380 iw 381 (432)
+.
T Consensus 254 ~i 255 (257)
T PF14779_consen 254 TI 255 (257)
T ss_pred EE
Confidence 64
No 484
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=62.44 E-value=1.6e+02 Score=28.74 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=14.0
Q ss_pred CCCCCcEEEEEeCCCeEEEeeCC
Q 014003 409 DPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 409 sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
++..+ ++++...+|.|.+|++.
T Consensus 198 d~~r~-~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 198 DPSRR-LLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp ETTTT-EEEEEESSE-EEEEEE-
T ss_pred cCCcC-EEEEEeCCCcEEEEEEe
Confidence 34444 77777788888888764
No 485
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=61.66 E-value=2.3e+02 Score=30.31 Aligned_cols=65 Identities=11% Similarity=0.100 Sum_probs=33.9
Q ss_pred cCCEEEEEeCCCcEEEEEcCCCCceeEEeeccCC-cceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 365 WDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNED-HGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 365 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
.+++|+.|..-..+.++-....--...+.....+ ....+..+. ...++.+++++..+|.|+++..
T Consensus 1101 ~~Nlll~gD~~qg~~F~gF~~ePyRm~l~s~s~~~~n~~s~efL-v~G~~lyf~~~Da~gnih~l~Y 1166 (1319)
T COG5161 1101 VKNLLLAGDIYQGLSFFGFQSEPYRMHLISSSEPLRNATSTEFL-VTGNELYFLCCDAKGNIHGLTY 1166 (1319)
T ss_pred hhheeehhhhhcCcEEEEecCCcEEEEEecCCchhhcchhhHhh-ccCCeeEEEEEcCCCCEEEEec
Confidence 3678888876666666655433222222222211 111111111 2334457888889999998754
No 486
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=59.75 E-value=15 Score=38.56 Aligned_cols=101 Identities=16% Similarity=0.265 Sum_probs=64.8
Q ss_pred EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEE-------------EEEeCCEEEEEeCCCeEEEEEC-----C
Q 014003 283 MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC-------------LAVGGKRLYSGSMDNTIRVWDL-----D 344 (432)
Q Consensus 283 ~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~-------------l~~~~~~l~sgs~dg~I~vwd~-----~ 344 (432)
++-.+-.+++|++....+... ..+.+|...++. +..+|..++.++.||.++.|.+ .
T Consensus 197 ~ic~~~~~~~i~lL~~~ra~~------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~ 270 (1283)
T KOG1916|consen 197 YICYGLKGGEIRLLNINRALR------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKI 270 (1283)
T ss_pred eeeeccCCCceeEeeechHHH------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccc
Confidence 677778889999888766531 223345554443 4446999999999998777754 3
Q ss_pred CCceEEEecCCC-CCcEEEEEcC-----------CEEEEEe-CCCcEEEEEcCCCCce
Q 014003 345 TLEAVMTLNGHT-DAPMSLLCWD-----------QYLLSCS-LDNTIKVWIMTEEGNL 389 (432)
Q Consensus 345 ~~~~~~~~~~~~-~~v~~~~~~~-----------~~l~s~s-~dg~i~iwd~~~~~~~ 389 (432)
..+|++.++.|. .+-.|..|.. .++++++ ....+++|....-+++
T Consensus 271 ~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 271 VHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 456677778887 3444444552 2344444 3456888877665554
No 487
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=58.63 E-value=1.2e+02 Score=26.30 Aligned_cols=91 Identities=11% Similarity=0.030 Sum_probs=53.7
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEE-EeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEE
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYS-GSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVG 249 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s-~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (432)
..|++||+.++.. +..-.-....+..=-...-++++.. .-.||.-.++|.++-+++..+....+--.+..++.-+..+
T Consensus 68 S~ir~~~L~~gq~-~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt~d~~~Lims 146 (262)
T COG3823 68 SKIRVSDLTTGQE-IFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWGLTSDDKNLIMS 146 (262)
T ss_pred ceeEEEeccCceE-EEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcceeeecCCcceEee
Confidence 3599999987733 3222111122221111122333332 2347888899999999999988887777777666555544
Q ss_pred -cCCeEEEEEccCC
Q 014003 250 -MPNVVKAWHIESS 262 (432)
Q Consensus 250 -~~~~i~vwd~~~~ 262 (432)
....++.-|.++.
T Consensus 147 dGsatL~frdP~tf 160 (262)
T COG3823 147 DGSATLQFRDPKTF 160 (262)
T ss_pred CCceEEEecCHHHh
Confidence 5556666666554
No 488
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=58.04 E-value=50 Score=34.59 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=66.9
Q ss_pred cCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEE
Q 014003 271 VGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVM 350 (432)
Q Consensus 271 ~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~ 350 (432)
...+.++.+...-+..|..||++-.|--.-...-..++...+.....+|.++++....++ ++.+|.|.++...+.....
T Consensus 581 ~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~lPvrsla~~ed~~w-as~gG~V~vi~~tt~~~~~ 659 (925)
T KOG3522|consen 581 HESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGSLPVRSLAFQEDFVW-ASEGGCVHVIPSTTFIRSW 659 (925)
T ss_pred hhhhhhhhccccccccCccCCccccccCCCCCCCCCCCccccccCCccccchhhhhceee-eecCCceEEEechhccccc
Confidence 445666666666677777777776653221111001122223334567777777655544 5679999999999877777
Q ss_pred EecCC---CCCcEEEEEcCCEEEEEeCC-CcEEEEEcCCC
Q 014003 351 TLNGH---TDAPMSLLCWDQYLLSCSLD-NTIKVWIMTEE 386 (432)
Q Consensus 351 ~~~~~---~~~v~~~~~~~~~l~s~s~d-g~i~iwd~~~~ 386 (432)
.+..| ...|+.+...+.-+..+-.. ..++.++..+-
T Consensus 660 ~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtetl 699 (925)
T KOG3522|consen 660 DLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTETL 699 (925)
T ss_pred hhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEeccccc
Confidence 66554 44577777775444333333 34555555443
No 489
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=57.94 E-value=64 Score=23.52 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 375 DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 375 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
-+.|..||..+ .......-.....+.+ +|+++.+.++....+.|++|+..
T Consensus 35 ~~~Vvyyd~~~---~~~va~g~~~aNGI~~----s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 35 WGNVVYYDGKE---VKVVASGFSFANGIAI----SPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CceEEEEeCCE---eEEeeccCCCCceEEE----cCCCCEEEEEeccCCeEEEEEec
Confidence 34566666533 2222222223355666 89999788888889999999865
No 490
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=57.56 E-value=5.5 Score=20.90 Aligned_cols=20 Identities=50% Similarity=1.032 Sum_probs=15.9
Q ss_pred eeeeeecC-ccCCCCCccccc
Q 014003 60 LCVYFLEG-RCNRNPCRFAHT 79 (432)
Q Consensus 60 ~~~~~~~~-~~~~~p~~~l~~ 79 (432)
.|.|=..| .||...|+|.|-
T Consensus 2 lC~yEl~Gg~Cnd~~C~~QHf 22 (23)
T PF10650_consen 2 LCPYELTGGVCNDPDCEFQHF 22 (23)
T ss_pred CCccccCCCeeCCCCCCcccc
Confidence 46666677 999999999983
No 491
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=57.22 E-value=1.7e+02 Score=32.37 Aligned_cols=136 Identities=15% Similarity=0.134 Sum_probs=82.1
Q ss_pred CEEEEEeC---------CCcEEEEeCC-----CCce--------eEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccC-
Q 014003 205 DKLYSGSR---------DGTVQLWDCH-----TGQS--------ASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIES- 261 (432)
Q Consensus 205 ~~l~s~s~---------Dg~v~iWd~~-----~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~- 261 (432)
.||+.|.. -|.+.|+|+- -|++ +..-+..+.+..+..-...++.+....|.+|+++.
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~GqKI~v~~l~r~ 1126 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRD 1126 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEccCcEEEEEEeccC
Confidence 46777632 3788999862 2321 12222445666666566677777888999999944
Q ss_pred CceE--eecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeec--cccCeEEEEE--e--CCEEEEEe
Q 014003 262 SAEF--SLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKG--HTRPVTCLAV--G--GKRLYSGS 333 (432)
Q Consensus 262 ~~~~--~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~--h~~~v~~l~~--~--~~~l~sgs 333 (432)
...+ .+....--+.++..-.++|+.|.--..|.+.-...... + ...+.. ..-.+++..| + .-.++++.
T Consensus 1127 ~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~---r-lsL~srd~~~l~v~s~EFLVdg~~L~flvsD 1202 (1366)
T KOG1896|consen 1127 SELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPY---R-LSLLSRDFEPLNVYSTEFLVDGSNLSFLVSD 1202 (1366)
T ss_pred CcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCce---E-EEEeecCCchhhceeeeeEEcCCeeEEEEEc
Confidence 3332 34444555566666667888888777777776655421 1 111111 1223455555 3 34688899
Q ss_pred CCCeEEEEECC
Q 014003 334 MDNTIRVWDLD 344 (432)
Q Consensus 334 ~dg~I~vwd~~ 344 (432)
.|+.|+++-..
T Consensus 1203 a~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1203 ADRNIHVYMYA 1213 (1366)
T ss_pred CCCcEEEEEeC
Confidence 99999998654
No 492
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=56.53 E-value=1.4e+02 Score=31.23 Aligned_cols=72 Identities=4% Similarity=0.158 Sum_probs=47.7
Q ss_pred CcCCEEEEEEc--CC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe-----CC---EEEEEeCCCe
Q 014003 270 PVGEVYSMVVA--NE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-----GK---RLYSGSMDNT 337 (432)
Q Consensus 270 ~~~~v~~l~~~--~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-----~~---~l~sgs~dg~ 337 (432)
.....++++++ .. +||+++....|.+|-+...... ..... -..|...|.+++|- +. .+++++-.|.
T Consensus 162 v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r-~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~ 239 (717)
T PF08728_consen 162 VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDER-FYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGE 239 (717)
T ss_pred cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccc-ccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCc
Confidence 34578889887 44 7888888888888866553211 11111 11256678888882 22 7888999999
Q ss_pred EEEEEC
Q 014003 338 IRVWDL 343 (432)
Q Consensus 338 I~vwd~ 343 (432)
+.+|++
T Consensus 240 v~~~~I 245 (717)
T PF08728_consen 240 VWTFKI 245 (717)
T ss_pred EEEEEE
Confidence 999887
No 493
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=55.45 E-value=2.2e+02 Score=29.89 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=43.3
Q ss_pred CcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEE
Q 014003 270 PVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWD 342 (432)
Q Consensus 270 ~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd 342 (432)
....++++..+|. .++.+..||+|.+|+.....+. + +-....+-..+.|...-|++.++|..+.-|.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs--k----i~~~~~p~~nlv~tnhgl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS--K----ICEEAKPKENLVFTNHGLVTATSDRRALAWK 81 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchh--h----hhhhcCCccceeeeccceEEEeccchhheee
Confidence 3445667777776 8899999999999998665321 1 1111223344556555677777777777775
No 494
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=55.09 E-value=50 Score=29.67 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=42.3
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeC-CCCCcEEEEEeCCCeEEEe
Q 014003 367 QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLND-PDGNPVLICSCNDDSVHLY 428 (432)
Q Consensus 367 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~s-p~g~~~l~sg~~Dg~I~iw 428 (432)
..|+.|.++|.|.|.|...-..+....-..-++ .+...+.|+ -|. .++.++.||.|++.
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdy--RI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDY--RIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccce--EEEEEeCCCEEEEE
Confidence 579999999999999988776655555444443 455556664 444 57778899999864
No 495
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=54.99 E-value=2 Score=41.46 Aligned_cols=114 Identities=12% Similarity=0.144 Sum_probs=72.5
Q ss_pred CCCCCCCCCCceecCCCCCCCcccccccCCCCCC--CCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCC
Q 014003 92 SPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRT--VPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDE 169 (432)
Q Consensus 92 ~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 169 (432)
......|-+.+.-++-++.+-++..+|..+.... .++...+++.++.. | ...++-+..
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDke-------------------g-dvlavlAek 95 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKE-------------------G-DVLAVLAEK 95 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccc-------------------c-chhhhhhhc
Confidence 3356677777777888888999999876654432 22333333333221 1 114455667
Q ss_pred CCeEEEEeCCCCcEEEEEEec-ccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee
Q 014003 170 CRFWHSWFCGEGFTMLAKLEG-HKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSA 227 (432)
Q Consensus 170 d~~i~vw~~~~~~~~~~~l~~-H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~ 227 (432)
.+.+.+|++.+.......+.+ |.... +.|++....++.+-..|.+.|++..+...+
T Consensus 96 ~~piylwd~n~eytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~i 152 (615)
T KOG2247|consen 96 TGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRI 152 (615)
T ss_pred CCCeeechhhhhhHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhh
Confidence 788999999775433333333 33333 778898888998888899999987765443
No 496
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.72 E-value=2.2e+02 Score=27.96 Aligned_cols=140 Identities=9% Similarity=0.053 Sum_probs=83.5
Q ss_pred EEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCce--
Q 014003 274 VYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA-- 348 (432)
Q Consensus 274 v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~-- 348 (432)
.+.+.++.. ..+.+...|.+.=|-+..... .-++..-....++|.++.|+ .+.+|+--.|..|.+++....+.
T Consensus 25 sngvFfDDaNkqlfavrSggatgvvvkgpnd--DVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRSGGATGVVVKGPND--DVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeeccCcceEEEEecCCeeEEEEeCCCC--CCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 344555543 444555556666666554432 12222223456699999997 77888888999999999844333
Q ss_pred --EEEecCCCCCcEEEEEcC-CEEEEEeCCCcEEEEEcCCC-CceeEEeeccCCcceEEEeeeeCCCCCcEEEEEe
Q 014003 349 --VMTLNGHTDAPMSLLCWD-QYLLSCSLDNTIKVWIMTEE-GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC 420 (432)
Q Consensus 349 --~~~~~~~~~~v~~~~~~~-~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~ 420 (432)
..+.+..+..|..+.|.. .-+|..+ +.-+-+|..... +.++....++..+.-..+ .|+.+..|++.+
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s~e~A~i~-~~G~e~y~v~pekrslRlVks~~~nvnWy~y----c~et~v~LL~t~ 173 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSSTEIAFIT-DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMY----CPETAVILLSTT 173 (657)
T ss_pred HHHHHhccCcceeEEEEEecCeeEEEEe-cCCeEEEEEchhhhhhhhhhhcccCccEEEE----ccccceEeeecc
Confidence 223344455677777774 4455554 444777766543 344555566666666665 466665555555
No 497
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=52.82 E-value=3.5e+02 Score=29.68 Aligned_cols=172 Identities=13% Similarity=0.174 Sum_probs=92.9
Q ss_pred eEEEEEccCCceEeecCC-----cCCEEEEEEcCC----EEEEEE-----------CCCcEEEEECCCCCCCccccceee
Q 014003 253 VVKAWHIESSAEFSLDGP-----VGEVYSMVVANE----MLFAGA-----------QDGNILVWKGIPNTQNPFQLAALL 312 (432)
Q Consensus 253 ~i~vwd~~~~~~~~~~~~-----~~~v~~l~~~~~----~l~~g~-----------~dg~i~~wd~~~~~~~~~~~~~~~ 312 (432)
.|++.|..++..+....+ .-.+.++.++.. +++++. .+|.++.|++..... ..+.+...
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~-~lellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD-KLELLHKT 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc-eeeeeecc
Confidence 477888877765432211 223455555433 333332 345577777655432 12222221
Q ss_pred eccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecC--CCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCcee
Q 014003 313 KGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNG--HTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLE 390 (432)
Q Consensus 313 ~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 390 (432)
.-..++..++.-..++++| ....+++||+-..++++.... -...|..+.+....++.|...-.+.++..+......
T Consensus 933 -~~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 933 -EIPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred -CCCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeE
Confidence 2234566666555555554 457899999988777655432 244577777778888888877777776666544333
Q ss_pred EEe-eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 391 VAY-THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 391 ~~~-~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
... ....+-...+.. . -|.. -++.+..=|.+.+-.++
T Consensus 1011 ~~fadD~~pR~Vt~~~--~-lD~~-tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALE--L-LDYD-TVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEEeCCCccceeeEEE--E-ecCC-ceeeccccCcEEEEECC
Confidence 333 222221111111 1 2223 47767666777665543
No 498
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=52.46 E-value=1.8e+02 Score=26.16 Aligned_cols=206 Identities=9% Similarity=0.006 Sum_probs=0.0
Q ss_pred CCCCCCCCCC-CCCCCCCCCCceecCCCC-CCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEee
Q 014003 82 QTLPVSNHKK-SPPSYNCPKNNVRVSSGS-EEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHW 159 (432)
Q Consensus 82 ~~~~~~gh~~-~v~~~~~s~~g~~las~~-~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (432)
|.+...+... .+.+.+.++||..+|.-. .++.-.|| ................-....+.+
T Consensus 14 pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~~~~L~------------------~~~~~~~~~~~~~g~~l~~PS~d~ 75 (253)
T PF10647_consen 14 PVPGALGEGGYDVTSPAVSPDGSRVAAVSEGDGGRSLY------------------VGPAGGPVRPVLTGGSLTRPSWDP 75 (253)
T ss_pred ECCCCcCcCCccccceEECCCCCeEEEEEEcCCCCEEE------------------EEcCCCcceeeccCCccccccccC
Q ss_pred ccCceeeCCCCCeEEEE-eCCCCcEEEEEEecccC--cEEEEEecCCCCEEEEEe---CCCcEEEEeCCCCceeEEEeCC
Q 014003 160 LSGNCVKGDECRFWHSW-FCGEGFTMLAKLEGHKK--AVSGIALPLRSDKLYSGS---RDGTVQLWDCHTGQSASVINLG 233 (432)
Q Consensus 160 ~~~~~~~g~~d~~i~vw-~~~~~~~~~~~l~~H~~--~V~~l~~~~~~~~l~s~s---~Dg~v~iWd~~~~~~~~~~~~~ 233 (432)
.....+....+...+++ +..++......+..-.. .|+++.++|||..++... .++.|.+=-+.....-......
T Consensus 76 ~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~ 155 (253)
T PF10647_consen 76 DGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLT 155 (253)
T ss_pred CCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceec
Q ss_pred CceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEE-EECCCCCCCccccc
Q 014003 234 AEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILV-WKGIPNTQNPFQLA 309 (432)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~-wd~~~~~~~~~~~~ 309 (432)
...... ......+.++.|.++ .++....++.+.. ....... .
T Consensus 156 ~~~~~~----------------------------~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~------~ 201 (253)
T PF10647_consen 156 GPRRVA----------------------------PPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGP------S 201 (253)
T ss_pred cceEec----------------------------ccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCc------c
Q ss_pred eeeeccccCeEEEEEe-CCEEEEEeCCCeEE
Q 014003 310 ALLKGHTRPVTCLAVG-GKRLYSGSMDNTIR 339 (432)
Q Consensus 310 ~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~ 339 (432)
..+..-...+..++.. +.-.+....++.+.
T Consensus 202 ~~l~~~~~~~~v~a~~~~~~~~~~t~~~~~~ 232 (253)
T PF10647_consen 202 TPLPSVNLGVPVVAVAASPSTVYVTDDGGVL 232 (253)
T ss_pred cccCCCCCCcceEEeeCCCcEEEEECCCcEE
No 499
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=52.44 E-value=1.1e+02 Score=25.47 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=24.6
Q ss_pred CCEEEEEEcCC--------EEEEEECCCcEEEEECCC
Q 014003 272 GEVYSMVVANE--------MLFAGAQDGNILVWKGIP 300 (432)
Q Consensus 272 ~~v~~l~~~~~--------~l~~g~~dg~i~~wd~~~ 300 (432)
..+.+++|+|. +|++-+.+|.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 47889999984 899999999999998654
No 500
>PRK13684 Ycf48-like protein; Provisional
Probab=51.68 E-value=2.1e+02 Score=26.89 Aligned_cols=140 Identities=10% Similarity=-0.007 Sum_probs=74.3
Q ss_pred ECCCEEEEEcCCeEEEEEccCCceE--eecCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceee-eccc
Q 014003 241 CEGPWVFVGMPNVVKAWHIESSAEF--SLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALL-KGHT 316 (432)
Q Consensus 241 ~~~~~l~~~~~~~i~vwd~~~~~~~--~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~-~~h~ 316 (432)
+++.+++++..|.+..-.-..++.. ........+.++.+.++ .++..+..|.+++=....+.. ++....- ....
T Consensus 182 ~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~s--W~~~~~~~~~~~ 259 (334)
T PRK13684 182 PDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLES--WSKPIIPEITNG 259 (334)
T ss_pred CCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCc--cccccCCccccc
Confidence 4566777777776654311222322 22334567788888776 455556677765322333322 2221111 0112
Q ss_pred cCeEEEEEe-CCEEEEEeCCCeEEEEECCCCceEEEecC---CCCCcEEEEEc-CCEEEEEeCCCcEEEEEc
Q 014003 317 RPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNG---HTDAPMSLLCW-DQYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 317 ~~v~~l~~~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~---~~~~v~~~~~~-~~~l~s~s~dg~i~iwd~ 383 (432)
..+..+.+. ...++.++.+|.|. .....++.-..... -......+.+. ++..+..+..|.|..|+-
T Consensus 260 ~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 260 YGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred cceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 346677775 44456666778665 44455554444322 22245555555 666777888898887753
Done!