Query 014003
Match_columns 432
No_of_seqs 724 out of 4124
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 03:44:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 6.6E-43 2.3E-47 339.2 30.5 282 83-431 101-410 (410)
2 3ow8_A WD repeat-containing pr 100.0 5.5E-42 1.9E-46 321.7 30.3 282 85-431 27-320 (321)
3 4gqb_B Methylosome protein 50; 100.0 1E-41 3.5E-46 322.6 31.6 291 86-432 26-331 (344)
4 1nr0_A Actin interacting prote 100.0 1.4E-40 4.8E-45 339.2 36.7 341 84-432 53-567 (611)
5 2ynn_A Coatomer subunit beta'; 100.0 8E-41 2.7E-45 311.3 28.8 283 84-431 7-301 (304)
6 1got_B GT-beta; complex (GTP-b 100.0 2E-40 7E-45 313.5 30.8 279 84-429 49-340 (340)
7 4g56_B MGC81050 protein; prote 100.0 5.8E-41 2E-45 319.4 26.9 287 85-432 37-343 (357)
8 1nr0_A Actin interacting prote 100.0 2.9E-40 1E-44 336.8 31.8 318 84-431 141-610 (611)
9 2pbi_B Guanine nucleotide-bind 100.0 4.6E-40 1.6E-44 312.8 30.9 282 84-429 58-354 (354)
10 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.8E-39 2.3E-43 314.1 36.7 319 84-431 112-441 (445)
11 3iz6_a 40S ribosomal protein R 100.0 1.7E-40 6E-45 318.9 24.6 288 85-432 61-375 (380)
12 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.5E-40 2.2E-44 310.7 26.6 291 85-432 10-335 (345)
13 2ymu_A WD-40 repeat protein; u 100.0 1.6E-38 5.6E-43 321.3 34.9 309 85-429 257-577 (577)
14 4ery_A WD repeat-containing pr 100.0 8.5E-39 2.9E-43 298.3 30.2 281 85-431 18-311 (312)
15 3frx_A Guanine nucleotide-bind 100.0 1.5E-38 5E-43 298.1 31.3 285 85-432 12-317 (319)
16 1erj_A Transcriptional repress 100.0 1.9E-38 6.4E-43 306.1 32.5 295 88-431 62-388 (393)
17 2hes_X YDR267CP; beta-propelle 100.0 2.9E-39 1E-43 304.3 26.1 287 85-432 9-328 (330)
18 1r5m_A SIR4-interacting protei 100.0 1.8E-38 6E-43 307.7 31.9 330 87-431 42-424 (425)
19 4aow_A Guanine nucleotide-bind 100.0 4.3E-38 1.5E-42 296.2 33.0 282 85-432 33-337 (340)
20 2ymu_A WD-40 repeat protein; u 100.0 1.4E-37 4.8E-42 314.4 35.7 312 85-431 216-538 (577)
21 2pm9_A Protein WEB1, protein t 100.0 1.4E-38 4.9E-43 308.1 23.9 318 91-432 13-414 (416)
22 2xzm_R RACK1; ribosome, transl 100.0 2.2E-37 7.7E-42 293.0 30.7 283 85-432 16-340 (343)
23 3vl1_A 26S proteasome regulato 100.0 2E-36 6.9E-41 293.7 30.0 316 89-432 55-419 (420)
24 3zwl_B Eukaryotic translation 100.0 2.1E-35 7.1E-40 280.5 34.7 277 85-431 27-345 (369)
25 2ynn_A Coatomer subunit beta'; 100.0 5.8E-35 2E-39 271.7 35.1 241 145-432 7-259 (304)
26 1p22_A F-BOX/WD-repeat protein 100.0 8E-35 2.7E-39 284.4 36.2 266 152-432 134-414 (435)
27 2pm7_B Protein transport prote 100.0 5.7E-36 1.9E-40 277.5 26.5 246 85-431 4-284 (297)
28 3v7d_B Cell division control p 100.0 3.8E-35 1.3E-39 288.8 33.8 310 85-428 116-459 (464)
29 3dm0_A Maltose-binding peripla 100.0 5.3E-36 1.8E-40 310.0 28.6 291 85-431 377-692 (694)
30 1gxr_A ESG1, transducin-like e 100.0 2.4E-34 8.2E-39 269.9 36.1 309 89-430 8-335 (337)
31 3v7d_B Cell division control p 100.0 7.1E-34 2.4E-38 279.7 40.8 273 146-432 116-421 (464)
32 3k26_A Polycomb protein EED; W 100.0 5.3E-36 1.8E-40 284.5 23.8 293 86-432 14-366 (366)
33 4e54_B DNA damage-binding prot 100.0 1.1E-35 3.9E-40 290.5 25.8 241 185-432 157-430 (435)
34 1vyh_C Platelet-activating fac 100.0 9.4E-35 3.2E-39 281.8 31.0 238 147-432 104-369 (410)
35 1k8k_C P40, ARP2/3 complex 41 100.0 9.4E-35 3.2E-39 276.9 29.5 282 87-431 5-360 (372)
36 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.5E-33 8.6E-38 274.6 40.4 273 145-432 112-391 (445)
37 1pgu_A Actin interacting prote 100.0 7.2E-35 2.5E-39 296.3 29.9 317 85-432 155-614 (615)
38 3bg1_A Protein SEC13 homolog; 100.0 5.6E-36 1.9E-40 280.1 18.5 247 85-431 8-292 (316)
39 1pgu_A Actin interacting prote 100.0 3.4E-34 1.2E-38 291.3 32.8 338 84-432 57-572 (615)
40 3ei3_B DNA damage-binding prot 100.0 1.6E-34 5.6E-39 277.1 28.4 279 85-432 68-382 (383)
41 4gga_A P55CDC, cell division c 100.0 7.7E-33 2.6E-37 269.2 40.3 270 154-431 108-394 (420)
42 3ow8_A WD repeat-containing pr 100.0 9.5E-34 3.3E-38 265.5 32.6 237 149-432 30-279 (321)
43 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-34 4E-39 283.3 27.5 276 86-390 129-419 (435)
44 4gqb_B Methylosome protein 50; 100.0 4.7E-35 1.6E-39 276.9 23.0 243 87-387 79-333 (344)
45 2oaj_A Protein SNI1; WD40 repe 100.0 7E-34 2.4E-38 300.8 33.0 331 89-430 97-659 (902)
46 1got_B GT-beta; complex (GTP-b 100.0 9.6E-33 3.3E-37 260.8 36.5 240 183-432 46-301 (340)
47 3sfz_A APAF-1, apoptotic pepti 100.0 5E-34 1.7E-38 313.4 30.8 318 85-432 610-1034(1249)
48 3sfz_A APAF-1, apoptotic pepti 100.0 8.5E-35 2.9E-39 319.5 24.1 336 85-432 738-1158(1249)
49 4ggc_A P55CDC, cell division c 100.0 5.3E-32 1.8E-36 252.1 39.1 269 155-431 29-314 (318)
50 3i2n_A WD repeat-containing pr 100.0 3.9E-34 1.3E-38 270.9 24.9 286 85-388 13-356 (357)
51 3dwl_C Actin-related protein 2 100.0 1.4E-34 4.8E-39 276.8 22.1 242 87-384 8-280 (377)
52 1sq9_A Antiviral protein SKI8; 100.0 2.8E-33 9.7E-38 269.3 31.1 277 147-432 12-395 (397)
53 3gre_A Serine/threonine-protei 100.0 2.9E-34 9.8E-39 280.4 23.7 281 85-429 57-437 (437)
54 4g56_B MGC81050 protein; prote 100.0 3.4E-34 1.1E-38 272.7 23.2 248 86-391 90-349 (357)
55 3odt_A Protein DOA1; ubiquitin 100.0 7.4E-32 2.5E-36 250.4 37.9 272 146-432 13-296 (313)
56 1gxr_A ESG1, transducin-like e 100.0 1.9E-32 6.5E-37 257.0 34.1 276 87-384 48-336 (337)
57 4h5i_A Guanine nucleotide-exch 100.0 1.3E-33 4.3E-38 269.5 26.5 285 92-432 16-343 (365)
58 4a11_B DNA excision repair pro 100.0 3.6E-33 1.2E-37 269.0 29.5 297 84-432 37-365 (408)
59 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-33 4.4E-38 298.8 28.6 319 86-431 13-518 (902)
60 4aez_A CDC20, WD repeat-contai 100.0 6.8E-32 2.3E-36 260.8 37.8 267 154-432 96-380 (401)
61 2pbi_B Guanine nucleotide-bind 100.0 6.3E-32 2.2E-36 256.7 36.3 240 183-432 55-315 (354)
62 3mmy_A MRNA export factor; mRN 100.0 3.2E-33 1.1E-37 265.3 24.7 279 85-429 34-343 (368)
63 3iz6_a 40S ribosomal protein R 100.0 8.5E-33 2.9E-37 265.3 27.6 248 173-431 48-328 (380)
64 3mkq_A Coatomer beta'-subunit; 100.0 2.4E-32 8.1E-37 287.2 32.2 278 85-387 8-304 (814)
65 2hes_X YDR267CP; beta-propelle 100.0 1.1E-31 3.8E-36 252.4 32.8 250 145-431 8-279 (330)
66 1sq9_A Antiviral protein SKI8; 100.0 3.8E-33 1.3E-37 268.4 22.9 281 85-386 11-396 (397)
67 4ery_A WD repeat-containing pr 100.0 6.7E-31 2.3E-35 244.8 36.8 245 181-432 12-268 (312)
68 3odt_A Protein DOA1; ubiquitin 100.0 1.3E-32 4.3E-37 255.6 24.4 278 85-391 13-302 (313)
69 3i2n_A WD repeat-containing pr 100.0 3.2E-31 1.1E-35 250.8 33.7 276 147-432 14-353 (357)
70 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-32 3.9E-37 273.9 23.7 266 89-431 132-427 (524)
71 3jrp_A Fusion protein of prote 100.0 2.8E-32 9.6E-37 260.1 24.9 247 84-431 5-286 (379)
72 3vu4_A KMHSV2; beta-propeller 100.0 1.6E-31 5.5E-36 254.0 30.0 280 82-431 11-335 (355)
73 1yfq_A Cell cycle arrest prote 100.0 4.2E-32 1.5E-36 255.6 25.8 271 87-424 8-315 (342)
74 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.5E-31 1.5E-35 249.9 32.9 244 181-431 4-282 (345)
75 3f3f_A Nucleoporin SEH1; struc 100.0 2.3E-33 8E-38 263.6 16.9 302 84-432 5-337 (351)
76 1r5m_A SIR4-interacting protei 100.0 6.1E-31 2.1E-35 254.6 33.3 268 153-431 49-360 (425)
77 2j04_B YDR362CP, TAU91; beta p 100.0 1.5E-32 5.2E-37 273.0 21.2 273 98-431 169-516 (524)
78 1erj_A Transcriptional repress 100.0 2E-30 6.8E-35 249.9 35.0 230 153-432 68-341 (393)
79 3frx_A Guanine nucleotide-bind 100.0 3.4E-30 1.2E-34 241.1 35.2 236 183-431 8-266 (319)
80 3dw8_B Serine/threonine-protei 100.0 1.9E-31 6.4E-36 260.7 25.6 285 88-430 26-444 (447)
81 3vl1_A 26S proteasome regulato 100.0 9.1E-31 3.1E-35 253.8 30.1 266 153-431 60-364 (420)
82 2pm9_A Protein WEB1, protein t 100.0 4.1E-31 1.4E-35 255.7 26.0 269 154-432 17-337 (416)
83 2xzm_R RACK1; ribosome, transl 100.0 1.4E-29 4.6E-34 239.5 35.3 240 183-432 12-285 (343)
84 4gga_A P55CDC, cell division c 100.0 1.6E-30 5.4E-35 252.8 27.9 252 85-394 142-404 (420)
85 3jro_A Fusion protein of prote 100.0 7E-31 2.4E-35 273.7 24.2 246 85-431 4-284 (753)
86 4ggc_A P55CDC, cell division c 100.0 2.9E-30 9.9E-35 240.3 25.3 245 85-387 62-317 (318)
87 4aow_A Guanine nucleotide-bind 100.0 7.1E-29 2.4E-33 233.1 34.9 239 183-432 29-286 (340)
88 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-28 4.1E-33 259.1 39.6 277 145-431 7-301 (814)
89 2xyi_A Probable histone-bindin 100.0 7.5E-30 2.6E-34 248.9 26.2 260 85-431 123-409 (430)
90 3gre_A Serine/threonine-protei 100.0 2.4E-29 8.3E-34 245.4 29.9 239 183-432 53-359 (437)
91 3dm0_A Maltose-binding peripla 100.0 3.8E-29 1.3E-33 258.6 32.8 242 145-432 376-632 (694)
92 4aez_A CDC20, WD repeat-contai 100.0 1.8E-29 6.2E-34 243.8 28.4 279 87-393 88-388 (401)
93 2aq5_A Coronin-1A; WD40 repeat 100.0 1E-29 3.4E-34 245.6 25.7 277 93-431 37-341 (402)
94 3lrv_A PRE-mRNA-splicing facto 100.0 2.6E-29 9.1E-34 237.4 27.7 262 94-428 40-329 (343)
95 3dwl_C Actin-related protein 2 100.0 2.6E-30 9E-35 247.0 21.1 236 152-430 14-279 (377)
96 4h5i_A Guanine nucleotide-exch 100.0 5.8E-30 2E-34 244.2 22.6 256 84-386 67-344 (365)
97 2pm7_B Protein transport prote 100.0 1.6E-28 5.5E-33 227.3 29.5 203 185-431 2-237 (297)
98 3ei3_B DNA damage-binding prot 100.0 3.4E-28 1.1E-32 233.1 32.3 240 183-432 64-339 (383)
99 2j04_A TAU60, YPL007P, hypothe 100.0 1.1E-29 3.9E-34 247.6 22.0 270 89-431 14-296 (588)
100 1k8k_C P40, ARP2/3 complex 41 100.0 2.3E-28 7.8E-33 232.6 30.6 236 188-431 4-273 (372)
101 3k26_A Polycomb protein EED; W 100.0 8.7E-29 3E-33 234.7 26.7 236 187-432 13-318 (366)
102 3zwl_B Eukaryotic translation 100.0 4E-27 1.4E-31 223.3 37.8 244 183-432 23-304 (369)
103 4gq1_A NUP37; propeller, trans 100.0 1.3E-29 4.4E-34 244.3 19.4 231 156-429 96-386 (393)
104 1yfq_A Cell cycle arrest prote 100.0 8.8E-28 3E-32 226.0 31.3 237 185-432 4-282 (342)
105 2aq5_A Coronin-1A; WD40 repeat 100.0 3.1E-28 1.1E-32 235.1 28.4 231 163-432 49-299 (402)
106 3dw8_B Serine/threonine-protei 100.0 5.7E-28 1.9E-32 236.0 29.6 236 190-432 26-373 (447)
107 3vu4_A KMHSV2; beta-propeller 100.0 1.6E-27 5.3E-32 226.5 30.2 242 175-431 3-270 (355)
108 4e54_B DNA damage-binding prot 100.0 1.3E-27 4.3E-32 233.4 26.9 240 186-432 113-387 (435)
109 4a11_B DNA excision repair pro 100.0 7.6E-28 2.6E-32 231.7 24.9 254 171-432 23-323 (408)
110 3bws_A Protein LP49; two-domai 100.0 8.1E-27 2.8E-31 227.0 31.5 265 154-432 127-432 (433)
111 3lrv_A PRE-mRNA-splicing facto 100.0 8.2E-28 2.8E-32 227.2 23.5 229 159-431 46-291 (343)
112 3bg1_A Protein SEC13 homolog; 100.0 3.5E-28 1.2E-32 227.2 19.4 203 187-431 8-246 (316)
113 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.2E-26 7.4E-31 225.7 32.8 266 153-430 8-389 (450)
114 1l0q_A Surface layer protein; 100.0 1.1E-25 3.9E-30 215.9 37.1 256 163-432 4-275 (391)
115 2j04_A TAU60, YPL007P, hypothe 100.0 4.7E-27 1.6E-31 229.3 26.9 233 85-384 47-296 (588)
116 2w18_A PALB2, fancn, partner a 100.0 5.5E-27 1.9E-31 215.4 25.2 237 164-431 56-356 (356)
117 2w18_A PALB2, fancn, partner a 100.0 1.1E-27 3.8E-32 220.0 18.6 185 168-383 154-355 (356)
118 3mmy_A MRNA export factor; mRN 100.0 6.8E-26 2.3E-30 214.7 30.4 239 183-432 30-304 (368)
119 1l0q_A Surface layer protein; 100.0 5.6E-25 1.9E-29 211.1 35.4 302 102-431 2-341 (391)
120 3jrp_A Fusion protein of prote 99.9 7E-26 2.4E-30 215.7 26.4 207 183-432 2-240 (379)
121 3bws_A Protein LP49; two-domai 99.9 4.2E-25 1.4E-29 214.9 29.3 273 91-385 123-432 (433)
122 2vdu_B TRNA (guanine-N(7)-)-me 99.9 2.1E-24 7.2E-29 211.5 31.2 235 192-430 4-337 (450)
123 4gq1_A NUP37; propeller, trans 99.9 2.1E-26 7.3E-31 221.7 15.8 265 87-384 86-388 (393)
124 3f3f_A Nucleoporin SEH1; struc 99.9 1.7E-24 5.9E-29 202.9 26.8 209 186-431 5-248 (351)
125 2xyi_A Probable histone-bindin 99.9 1.2E-24 4E-29 212.1 24.3 216 185-431 121-352 (430)
126 1nir_A Nitrite reductase; hemo 99.9 2.6E-23 8.8E-28 208.0 31.6 311 96-432 143-514 (543)
127 3jro_A Fusion protein of prote 99.9 3.6E-24 1.2E-28 223.1 24.1 205 185-432 2-238 (753)
128 1nir_A Nitrite reductase; hemo 99.9 1.8E-21 6.2E-26 194.6 33.1 265 157-432 145-458 (543)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.2E-21 4E-26 189.9 27.4 227 171-412 159-409 (415)
130 3u4y_A Uncharacterized protein 99.9 9E-20 3.1E-24 170.6 33.0 265 163-432 12-304 (331)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.6E-20 1.6E-24 178.7 28.0 249 169-431 87-386 (415)
132 2ecf_A Dipeptidyl peptidase IV 99.9 6.8E-21 2.3E-25 198.1 21.1 327 91-431 37-458 (741)
133 2ojh_A Uncharacterized protein 99.9 3.4E-19 1.2E-23 162.9 28.3 246 166-423 17-294 (297)
134 1k32_A Tricorn protease; prote 99.9 3E-20 1E-24 200.4 24.4 234 185-432 196-461 (1045)
135 1k32_A Tricorn protease; prote 99.9 2.2E-20 7.6E-25 201.4 23.4 330 85-430 94-500 (1045)
136 1ri6_A Putative isomerase YBHE 99.8 1.2E-18 4.2E-23 163.2 30.1 258 164-430 8-306 (343)
137 1pby_B Quinohemoprotein amine 99.8 1.5E-18 5E-23 162.2 27.2 253 163-432 3-310 (337)
138 1xfd_A DIP, dipeptidyl aminope 99.8 8.2E-19 2.8E-23 181.9 25.7 270 92-431 18-392 (723)
139 2ecf_A Dipeptidyl peptidase IV 99.8 8.4E-19 2.9E-23 182.3 24.7 270 154-431 41-412 (741)
140 2z3z_A Dipeptidyl aminopeptida 99.8 5.4E-19 1.8E-23 182.8 22.0 320 93-432 28-435 (706)
141 3vgz_A Uncharacterized protein 99.8 7.6E-17 2.6E-21 151.7 33.2 255 153-421 44-334 (353)
142 1ri6_A Putative isomerase YBHE 99.8 1.8E-17 6.2E-22 155.1 28.0 266 101-384 4-307 (343)
143 1pby_B Quinohemoprotein amine 99.8 2.7E-18 9.3E-23 160.4 21.5 267 103-396 2-321 (337)
144 2z3z_A Dipeptidyl aminopeptida 99.8 1.1E-17 3.8E-22 172.9 26.0 263 158-431 32-390 (706)
145 3vgz_A Uncharacterized protein 99.8 1.4E-16 4.8E-21 149.9 30.3 231 191-432 39-303 (353)
146 3u4y_A Uncharacterized protein 99.8 4.6E-17 1.6E-21 152.1 26.6 269 98-387 5-306 (331)
147 2oit_A Nucleoporin 214KDA; NH2 99.8 8.5E-18 2.9E-22 163.5 20.7 193 153-386 40-279 (434)
148 2oit_A Nucleoporin 214KDA; NH2 99.8 5.3E-18 1.8E-22 165.0 17.5 229 171-431 23-277 (434)
149 3pe7_A Oligogalacturonate lyas 99.8 5.2E-17 1.8E-21 155.2 24.2 246 173-430 62-380 (388)
150 3scy_A Hypothetical bacterial 99.8 3.1E-15 1.1E-19 141.6 33.2 256 168-430 24-335 (361)
151 1z68_A Fibroblast activation p 99.8 4.5E-17 1.5E-21 168.8 21.7 311 94-431 19-442 (719)
152 3o4h_A Acylamino-acid-releasin 99.7 9.1E-17 3.1E-21 162.4 21.8 255 153-431 25-314 (582)
153 3hfq_A Uncharacterized protein 99.7 2.3E-15 8E-20 141.6 29.7 256 168-430 13-315 (347)
154 1jmx_B Amine dehydrogenase; ox 99.7 6.7E-16 2.3E-20 144.9 25.7 276 94-395 3-335 (349)
155 1jmx_B Amine dehydrogenase; ox 99.7 1.1E-15 3.9E-20 143.3 23.3 222 197-432 4-325 (349)
156 3o4h_A Acylamino-acid-releasin 99.7 5.1E-16 1.7E-20 156.9 22.2 228 191-430 20-274 (582)
157 3hfq_A Uncharacterized protein 99.7 9.7E-15 3.3E-19 137.4 29.1 231 152-384 42-316 (347)
158 2ojh_A Uncharacterized protein 99.7 2.6E-15 8.9E-20 136.9 23.1 214 209-432 17-258 (297)
159 1z68_A Fibroblast activation p 99.7 2E-16 6.8E-21 163.9 15.6 268 156-431 22-390 (719)
160 4a5s_A Dipeptidyl peptidase 4 99.7 4.5E-15 1.5E-19 154.3 24.8 322 92-431 18-448 (740)
161 1xfd_A DIP, dipeptidyl aminope 99.7 2.1E-15 7.2E-20 156.2 20.0 229 194-429 18-341 (723)
162 3scy_A Hypothetical bacterial 99.7 1.6E-13 5.4E-18 129.8 31.3 272 95-384 6-336 (361)
163 1jof_A Carboxy-CIS,CIS-muconat 99.7 4.7E-14 1.6E-18 133.9 27.7 252 171-431 14-340 (365)
164 3c5m_A Oligogalacturonate lyas 99.7 2E-14 6.8E-19 137.3 24.4 248 173-430 62-380 (396)
165 3fvz_A Peptidyl-glycine alpha- 99.6 4.9E-13 1.7E-17 125.0 30.0 267 90-431 23-321 (329)
166 2oiz_A Aromatic amine dehydrog 99.6 2.5E-13 8.5E-18 128.7 28.0 251 169-432 29-334 (361)
167 1q7f_A NHL, brain tumor CG1071 99.6 2.7E-12 9.3E-17 117.1 31.2 229 189-431 26-279 (286)
168 1jof_A Carboxy-CIS,CIS-muconat 99.6 3.3E-13 1.1E-17 128.0 24.9 245 92-386 41-342 (365)
169 2dg1_A DRP35, lactonase; beta 99.6 1.1E-11 3.7E-16 115.7 34.6 226 184-421 36-300 (333)
170 2oiz_A Aromatic amine dehydrog 99.6 2.2E-13 7.5E-18 129.1 22.6 249 154-413 54-360 (361)
171 3azo_A Aminopeptidase; POP fam 99.6 8.5E-14 2.9E-18 142.7 20.4 287 85-388 18-372 (662)
172 3no2_A Uncharacterized protein 99.5 8.5E-12 2.9E-16 113.4 26.3 209 162-419 6-230 (276)
173 1qks_A Cytochrome CD1 nitrite 99.5 9.7E-11 3.3E-15 116.9 36.2 260 162-432 168-477 (567)
174 3q7m_A Lipoprotein YFGL, BAMB; 99.5 1.1E-11 3.9E-16 117.8 27.9 253 160-429 102-375 (376)
175 3dsm_A Uncharacterized protein 99.5 1.5E-11 5E-16 114.8 28.1 250 168-431 14-301 (328)
176 4a5s_A Dipeptidyl peptidase 4 99.5 2.6E-12 8.7E-17 133.5 25.2 231 194-431 18-352 (740)
177 2gop_A Trilobed protease; beta 99.5 1.8E-11 6.1E-16 114.8 26.2 234 170-430 42-329 (347)
178 1q7f_A NHL, brain tumor CG1071 99.5 6.5E-11 2.2E-15 107.9 28.9 223 154-387 34-282 (286)
179 2bkl_A Prolyl endopeptidase; m 99.5 1.2E-12 4.1E-17 135.0 19.1 241 87-348 117-400 (695)
180 1qks_A Cytochrome CD1 nitrite 99.5 2E-10 6.9E-15 114.7 32.9 309 99-432 164-538 (567)
181 3q7m_A Lipoprotein YFGL, BAMB; 99.4 2.6E-10 8.9E-15 108.3 30.1 255 161-432 53-337 (376)
182 1rwi_B Serine/threonine-protei 99.4 8.2E-11 2.8E-15 106.0 25.3 228 194-431 25-263 (270)
183 3pe7_A Oligogalacturonate lyas 99.4 6.1E-11 2.1E-15 112.9 25.6 246 177-432 16-329 (388)
184 3e5z_A Putative gluconolactona 99.4 1.3E-10 4.4E-15 106.5 26.8 226 153-430 31-284 (296)
185 2mad_H Methylamine dehydrogena 99.4 2.1E-09 7.2E-14 101.9 34.3 251 172-432 48-350 (373)
186 3azo_A Aminopeptidase; POP fam 99.4 3.6E-11 1.2E-15 123.2 23.1 251 168-428 44-363 (662)
187 3sjl_D Methylamine dehydrogena 99.4 6.5E-10 2.2E-14 104.6 29.5 253 170-432 58-363 (386)
188 2xdw_A Prolyl endopeptidase; a 99.4 3.2E-10 1.1E-14 117.1 30.0 235 190-432 122-414 (710)
189 2bkl_A Prolyl endopeptidase; m 99.4 4.1E-11 1.4E-15 123.5 23.2 232 190-432 118-397 (695)
190 3dsm_A Uncharacterized protein 99.4 2.2E-10 7.5E-15 106.8 25.9 231 163-404 56-319 (328)
191 2gop_A Trilobed protease; beta 99.4 1.5E-10 5.1E-15 108.4 24.3 226 154-396 63-340 (347)
192 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 6.1E-10 2.1E-14 102.6 27.9 231 189-431 14-298 (314)
193 2xdw_A Prolyl endopeptidase; a 99.4 6.4E-11 2.2E-15 122.4 22.9 243 87-387 121-416 (710)
194 3c5m_A Oligogalacturonate lyas 99.3 3.8E-11 1.3E-15 114.4 17.5 241 176-432 15-329 (396)
195 2dg1_A DRP35, lactonase; beta 99.3 3.5E-09 1.2E-13 98.5 29.2 260 91-376 6-301 (333)
196 2z2n_A Virginiamycin B lyase; 99.3 4E-08 1.4E-12 89.4 35.6 261 154-431 19-294 (299)
197 3fvz_A Peptidyl-glycine alpha- 99.3 5.9E-10 2E-14 103.9 23.2 216 192-431 23-276 (329)
198 2qc5_A Streptogramin B lactona 99.3 3.6E-08 1.2E-12 89.7 33.7 259 154-431 24-299 (300)
199 1yr2_A Prolyl oligopeptidase; 99.2 2.4E-09 8.2E-14 111.1 27.2 234 191-432 161-441 (741)
200 1rwi_B Serine/threonine-protei 99.2 1.4E-09 4.6E-14 98.0 21.9 227 154-388 28-267 (270)
201 3c75_H MADH, methylamine dehyd 99.2 1.2E-08 4.2E-13 97.6 29.0 252 171-432 99-402 (426)
202 2z2n_A Virginiamycin B lyase; 99.2 5.5E-08 1.9E-12 88.4 32.1 228 188-430 10-253 (299)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 5.4E-09 1.8E-13 96.2 25.3 230 154-386 22-300 (314)
204 3no2_A Uncharacterized protein 99.2 2.8E-09 9.5E-14 96.7 21.8 215 99-372 2-230 (276)
205 1xip_A Nucleoporin NUP159; bet 99.2 6E-09 2E-13 98.4 24.6 167 194-371 39-230 (388)
206 1yr2_A Prolyl oligopeptidase; 99.2 4.4E-10 1.5E-14 116.7 17.1 243 87-387 159-443 (741)
207 3sjl_D Methylamine dehydrogena 99.2 1.2E-08 4E-13 96.0 24.5 279 94-397 36-375 (386)
208 1kb0_A Quinohemoprotein alcoho 99.1 1.3E-08 4.4E-13 104.1 25.6 258 161-432 77-507 (677)
209 1mda_H Methylamine dehydrogena 99.1 1.1E-08 3.7E-13 96.3 22.6 245 172-432 47-346 (368)
210 3hrp_A Uncharacterized protein 99.1 1.1E-07 3.9E-12 91.2 30.2 228 193-431 131-409 (409)
211 3g4e_A Regucalcin; six bladed 99.1 1.4E-07 4.9E-12 86.2 28.9 225 188-422 8-263 (297)
212 3iuj_A Prolyl endopeptidase; h 99.1 3.7E-08 1.3E-12 101.3 27.1 234 190-432 126-405 (693)
213 3g4e_A Regucalcin; six bladed 99.1 6.5E-08 2.2E-12 88.6 25.5 199 163-366 27-250 (297)
214 3e5z_A Putative gluconolactona 99.1 2.8E-08 9.5E-13 90.8 22.5 196 185-431 20-245 (296)
215 2mad_H Methylamine dehydrogena 99.1 6.1E-07 2.1E-11 84.9 31.9 231 154-392 70-357 (373)
216 1yiq_A Quinohemoprotein alcoho 99.0 7.3E-08 2.5E-12 98.8 26.5 258 161-432 70-505 (689)
217 3hxj_A Pyrrolo-quinoline quino 99.0 1.5E-08 5E-13 94.0 19.5 210 204-431 107-323 (330)
218 2hz6_A Endoplasmic reticulum t 99.0 3.1E-10 1.1E-14 107.6 7.4 189 160-360 8-206 (369)
219 1yiq_A Quinohemoprotein alcoho 99.0 1.2E-07 4E-12 97.2 27.1 256 160-421 120-538 (689)
220 3iuj_A Prolyl endopeptidase; h 99.0 4.1E-08 1.4E-12 101.0 23.7 241 87-387 125-407 (693)
221 2qc5_A Streptogramin B lactona 99.0 1.3E-06 4.3E-11 79.3 31.4 226 190-430 17-258 (300)
222 2ghs_A AGR_C_1268P; regucalcin 99.0 6.4E-07 2.2E-11 83.1 29.1 214 194-422 50-293 (326)
223 1xip_A Nucleoporin NUP159; bet 99.0 2E-08 7E-13 94.7 18.7 141 237-388 43-194 (388)
224 3hrp_A Uncharacterized protein 99.0 2.8E-07 9.5E-12 88.4 26.2 219 154-383 135-408 (409)
225 3hxj_A Pyrrolo-quinoline quino 99.0 5.9E-09 2E-13 96.7 14.1 246 162-430 31-282 (330)
226 2iwa_A Glutamine cyclotransfer 99.0 7.6E-07 2.6E-11 79.3 26.5 203 183-431 10-236 (266)
227 1kb0_A Quinohemoprotein alcoho 98.9 2.6E-07 8.8E-12 94.5 26.0 250 160-421 127-540 (677)
228 2hz6_A Endoplasmic reticulum t 98.9 4.4E-10 1.5E-14 106.6 4.2 181 203-393 8-200 (369)
229 2ghs_A AGR_C_1268P; regucalcin 98.9 9.7E-07 3.3E-11 81.9 26.5 212 155-374 54-291 (326)
230 3dr2_A Exported gluconolactona 98.8 1.8E-06 6E-11 79.2 24.4 212 154-376 49-298 (305)
231 3c75_H MADH, methylamine dehyd 98.8 1.6E-06 5.6E-11 82.8 23.6 233 154-392 122-409 (426)
232 3nok_A Glutaminyl cyclase; bet 98.8 2.7E-06 9.1E-11 75.0 22.9 194 183-421 44-255 (268)
233 3mbr_X Glutamine cyclotransfer 98.8 4.9E-06 1.7E-10 72.6 23.9 195 183-421 10-224 (243)
234 1kv9_A Type II quinohemoprotei 98.8 1.8E-06 6.3E-11 88.1 24.3 258 161-432 66-488 (668)
235 3nol_A Glutamine cyclotransfer 98.7 2.6E-06 8.7E-11 75.1 21.8 184 183-373 32-243 (262)
236 1w6s_A Methanol dehydrogenase 98.7 8.7E-06 3E-10 81.6 28.0 188 161-353 62-350 (599)
237 3dr2_A Exported gluconolactona 98.7 8.2E-06 2.8E-10 74.7 26.0 227 185-430 37-304 (305)
238 2ad6_A Methanol dehydrogenase 98.7 7.1E-06 2.4E-10 82.1 27.0 258 161-432 62-494 (571)
239 2qe8_A Uncharacterized protein 98.6 1.4E-06 4.7E-11 81.4 16.0 227 153-423 20-312 (343)
240 2ad6_A Methanol dehydrogenase 98.5 7.7E-05 2.6E-09 74.6 28.1 249 161-421 115-527 (571)
241 4a2l_A BT_4663, two-component 98.5 0.00017 6E-09 75.1 31.6 258 164-431 186-479 (795)
242 1flg_A Protein (quinoprotein e 98.5 8.9E-05 3E-09 74.2 27.4 183 163-354 70-364 (582)
243 2qe8_A Uncharacterized protein 98.5 1.6E-05 5.3E-10 74.2 20.4 204 183-430 10-276 (343)
244 1mda_H Methylamine dehydrogena 98.5 6.5E-06 2.2E-10 77.3 17.7 233 154-398 69-359 (368)
245 3nol_A Glutamine cyclotransfer 98.5 3.4E-05 1.2E-09 67.9 20.9 190 225-420 32-244 (262)
246 1kv9_A Type II quinohemoprotei 98.5 0.00019 6.5E-09 73.2 29.7 255 161-420 117-520 (668)
247 1w6s_A Methanol dehydrogenase 98.5 0.00011 3.9E-09 73.5 27.3 251 164-420 124-535 (599)
248 1npe_A Nidogen, entactin; glyc 98.4 0.00067 2.3E-08 60.4 29.6 233 171-413 10-263 (267)
249 4a2l_A BT_4663, two-component 98.4 0.00095 3.2E-08 69.6 33.7 256 164-430 228-524 (795)
250 2ece_A 462AA long hypothetical 98.4 0.00028 9.5E-09 67.1 26.0 207 163-373 98-399 (462)
251 2fp8_A Strictosidine synthase; 98.3 0.00037 1.3E-08 64.1 25.4 229 152-386 21-314 (322)
252 1flg_A Protein (quinoprotein e 98.3 0.00038 1.3E-08 69.7 25.8 82 335-420 465-548 (582)
253 3v9f_A Two-component system se 98.2 0.0018 6.2E-08 67.3 31.1 232 192-431 312-567 (781)
254 2fp8_A Strictosidine synthase; 98.2 0.00066 2.3E-08 62.3 24.4 229 189-431 15-312 (322)
255 3v9f_A Two-component system se 98.2 0.0027 9.2E-08 66.0 31.3 248 172-431 231-523 (781)
256 2xzh_A Clathrin heavy chain 1; 98.1 0.0025 8.6E-08 57.5 24.6 213 213-432 48-290 (365)
257 1fwx_A Nitrous oxide reductase 98.1 0.00019 6.6E-09 70.5 18.8 235 163-419 104-405 (595)
258 2iwa_A Glutamine cyclotransfer 98.1 0.0016 5.4E-08 57.8 22.8 170 169-346 42-238 (266)
259 3nok_A Glutaminyl cyclase; bet 98.0 0.00055 1.9E-08 60.3 18.8 150 271-432 54-210 (268)
260 1npe_A Nidogen, entactin; glyc 98.0 0.0035 1.2E-07 55.6 23.6 150 272-431 36-197 (267)
261 2ece_A 462AA long hypothetical 98.0 0.014 4.9E-07 55.4 29.9 208 202-420 93-399 (462)
262 1bpo_A Protein (clathrin); cla 97.9 0.0061 2.1E-07 57.2 24.5 212 214-432 48-289 (494)
263 2xe4_A Oligopeptidase B; hydro 97.9 0.0034 1.2E-07 64.9 25.5 189 194-383 175-398 (751)
264 1k3i_A Galactose oxidase precu 97.9 0.0012 4.2E-08 67.1 21.9 242 172-421 220-530 (656)
265 3v65_B Low-density lipoprotein 97.9 0.018 6.2E-07 54.3 31.6 217 171-394 96-327 (386)
266 1ijq_A LDL receptor, low-densi 97.9 0.0082 2.8E-07 54.9 24.4 181 245-431 3-194 (316)
267 2p4o_A Hypothetical protein; p 97.8 0.017 5.8E-07 52.4 26.6 215 153-375 35-278 (306)
268 3mbr_X Glutamine cyclotransfer 97.8 0.0023 8E-08 55.7 18.9 151 270-432 19-179 (243)
269 2xzh_A Clathrin heavy chain 1; 97.8 0.018 6.2E-07 52.0 29.1 218 171-399 49-304 (365)
270 1k3i_A Galactose oxidase precu 97.7 0.00085 2.9E-08 68.3 17.3 227 197-431 190-496 (656)
271 3v64_C Agrin; beta propeller, 97.7 0.012 4.1E-07 54.6 23.8 152 271-431 72-233 (349)
272 3v64_C Agrin; beta propeller, 97.7 0.033 1.1E-06 51.7 32.9 216 171-393 53-283 (349)
273 3p5b_L Low density lipoprotein 97.7 0.028 9.7E-07 53.2 25.7 177 250-431 90-276 (400)
274 3v65_B Low-density lipoprotein 97.7 0.0077 2.6E-07 56.8 21.5 153 270-431 114-276 (386)
275 3qqz_A Putative uncharacterize 97.6 0.03 1E-06 49.3 26.0 198 186-429 20-250 (255)
276 2vpj_A Kelch-like protein 12; 97.5 0.0068 2.3E-07 54.8 18.7 211 214-432 31-278 (301)
277 1fwx_A Nitrous oxide reductase 97.5 0.018 6.1E-07 56.7 22.0 180 242-431 100-360 (595)
278 2xn4_A Kelch-like protein 2; s 97.5 0.0079 2.7E-07 54.4 18.5 211 214-432 30-276 (302)
279 1bpo_A Protein (clathrin); cla 97.5 0.07 2.4E-06 50.2 32.0 242 170-427 47-326 (494)
280 3sov_A LRP-6, low-density lipo 97.4 0.068 2.3E-06 48.8 29.3 217 171-393 13-246 (318)
281 3sov_A LRP-6, low-density lipo 97.4 0.052 1.8E-06 49.6 22.3 179 245-431 6-196 (318)
282 4asc_A Kelch repeat and BTB do 97.3 0.043 1.5E-06 49.9 21.5 94 291-387 117-223 (315)
283 3ii7_A Kelch-like protein 7; p 97.3 0.023 8E-07 51.3 19.3 220 205-432 13-272 (306)
284 3amr_A 3-phytase; beta-propell 97.3 0.057 2E-06 49.5 21.1 138 290-431 98-262 (355)
285 3p5b_L Low density lipoprotein 97.3 0.13 4.4E-06 48.6 30.7 216 171-393 92-328 (400)
286 2vpj_A Kelch-like protein 12; 97.3 0.032 1.1E-06 50.3 19.6 212 171-387 31-280 (301)
287 3m0c_C LDL receptor, low-densi 97.3 0.062 2.1E-06 55.5 23.6 183 244-431 396-588 (791)
288 1zgk_A Kelch-like ECH-associat 97.2 0.015 5.1E-07 52.8 17.0 222 203-432 24-287 (308)
289 2woz_A Kelch repeat and BTB do 97.2 0.072 2.5E-06 48.4 21.4 105 280-387 109-233 (318)
290 2p4o_A Hypothetical protein; p 97.2 0.13 4.4E-06 46.5 30.0 199 183-384 23-241 (306)
291 2xn4_A Kelch-like protein 2; s 97.1 0.057 2E-06 48.6 19.6 182 203-387 61-278 (302)
292 3m0c_C LDL receptor, low-densi 97.1 0.33 1.1E-05 50.1 31.6 216 171-393 404-640 (791)
293 2xbg_A YCF48-like protein; pho 97.1 0.086 2.9E-06 48.3 20.9 187 191-383 120-320 (327)
294 3amr_A 3-phytase; beta-propell 97.1 0.17 5.8E-06 46.4 23.8 188 203-393 39-272 (355)
295 1ijq_A LDL receptor, low-densi 97.0 0.2 6.7E-06 45.6 30.7 213 171-392 10-245 (316)
296 3tc9_A Hypothetical hydrolase; 97.0 0.17 6E-06 48.2 22.6 146 194-344 138-300 (430)
297 2xbg_A YCF48-like protein; pho 96.9 0.22 7.6E-06 45.4 21.5 175 163-343 135-320 (327)
298 3ott_A Two-component system se 96.8 0.59 2E-05 48.0 26.6 187 192-387 62-262 (758)
299 4a0p_A LRP6, LRP-6, low-densit 96.8 0.53 1.8E-05 47.3 30.9 215 170-392 14-244 (628)
300 2xe4_A Oligopeptidase B; hydro 96.7 0.073 2.5E-06 54.9 18.7 183 238-428 180-394 (751)
301 1n7d_A LDL receptor, low-densi 96.7 0.014 4.7E-07 59.7 13.1 171 152-363 455-632 (699)
302 1xi4_A Clathrin heavy chain; a 96.7 0.05 1.7E-06 58.7 17.4 212 214-432 48-289 (1630)
303 1zgk_A Kelch-like ECH-associat 96.6 0.097 3.3E-06 47.3 17.0 212 171-387 39-289 (308)
304 3qhy_B Beta-lactamase inhibito 96.6 0.36 1.2E-05 43.0 20.1 218 193-429 24-243 (282)
305 3ii7_A Kelch-like protein 7; p 96.6 0.17 5.7E-06 45.6 18.0 183 160-347 55-274 (306)
306 3s94_A LRP-6, low-density lipo 96.6 0.75 2.6E-05 46.1 26.1 214 171-389 18-247 (619)
307 3ei3_A DNA damage-binding prot 96.5 1.3 4.4E-05 47.8 32.4 166 215-385 808-999 (1158)
308 1n7d_A LDL receptor, low-densi 96.5 0.0076 2.6E-07 61.6 9.0 182 245-431 379-570 (699)
309 1xi4_A Clathrin heavy chain; a 96.4 0.25 8.4E-06 53.6 20.1 212 171-393 48-297 (1630)
310 4hw6_A Hypothetical protein, I 96.3 0.75 2.6E-05 43.8 23.2 231 194-431 140-432 (433)
311 3tc9_A Hypothetical hydrolase; 96.3 0.78 2.7E-05 43.6 26.1 146 152-300 139-301 (430)
312 3s94_A LRP-6, low-density lipo 96.3 1.1 3.7E-05 44.9 29.3 267 154-431 175-509 (619)
313 2uvk_A YJHT; unknown function, 96.3 0.39 1.3E-05 44.2 19.0 228 163-393 22-350 (357)
314 2p9w_A MAL S 1 allergenic prot 96.1 0.78 2.7E-05 41.6 21.6 197 188-385 8-265 (334)
315 3ei3_A DNA damage-binding prot 96.0 2.3 7.9E-05 45.9 26.7 209 171-382 807-1059(1158)
316 2be1_A Serine/threonine-protei 95.7 0.1 3.4E-06 47.9 11.9 179 204-390 10-236 (339)
317 4asc_A Kelch repeat and BTB do 95.6 0.54 1.8E-05 42.4 16.5 132 293-432 69-221 (315)
318 4hw6_A Hypothetical protein, I 95.5 1.7 5.9E-05 41.2 27.3 192 153-348 142-376 (433)
319 2be1_A Serine/threonine-protei 95.4 0.13 4.4E-06 47.2 11.2 185 161-350 10-236 (339)
320 2woz_A Kelch repeat and BTB do 94.7 2.2 7.5E-05 38.3 17.8 92 293-387 80-186 (318)
321 3kya_A Putative phosphatase; s 94.1 4.4 0.00015 39.1 24.9 233 194-431 140-474 (496)
322 4a0p_A LRP6, LRP-6, low-densit 93.9 5.9 0.0002 39.6 34.7 268 154-431 170-507 (628)
323 2uvk_A YJHT; unknown function, 93.8 3.8 0.00013 37.3 19.2 136 214-352 168-349 (357)
324 3sre_A PON1, serum paraoxonase 93.7 4.1 0.00014 37.4 18.8 149 274-431 52-251 (355)
325 2p9w_A MAL S 1 allergenic prot 93.5 4.3 0.00015 36.8 22.7 184 163-348 27-268 (334)
326 3pbp_A Nucleoporin NUP82; beta 93.3 5.4 0.00018 37.5 18.1 139 202-341 30-208 (452)
327 3qhy_B Beta-lactamase inhibito 93.1 4.4 0.00015 35.8 19.8 180 235-430 25-205 (282)
328 2zwa_A Leucine carboxyl methyl 92.5 6.8 0.00023 39.7 18.4 144 241-387 396-579 (695)
329 2ism_A Putative oxidoreductase 92.4 6.4 0.00022 36.0 26.3 93 192-287 30-151 (352)
330 3qqz_A Putative uncharacterize 92.2 5.4 0.00018 34.7 24.9 195 156-382 33-250 (255)
331 2rhk_C Cleavage and polyadenyl 91.9 0.045 1.5E-06 37.5 1.0 25 57-81 15-40 (72)
332 3d2q_A Muscleblind-like protei 91.6 0.083 2.8E-06 36.0 2.0 23 57-79 41-63 (70)
333 3d2n_A Muscleblind-like protei 90.4 0.083 2.8E-06 37.2 1.1 23 58-80 9-33 (83)
334 3pbp_A Nucleoporin NUP82; beta 90.1 13 0.00043 35.0 18.4 139 242-381 31-208 (452)
335 2d9n_A Cleavage and polyadenyl 89.9 0.093 3.2E-06 36.5 1.0 27 56-82 8-35 (77)
336 2e5s_A Otthump00000018578; ZF- 89.4 0.12 4.2E-06 37.7 1.3 23 57-79 55-77 (98)
337 2zwa_A Leucine carboxyl methyl 89.0 14 0.00047 37.4 16.8 183 202-387 396-637 (695)
338 3ott_A Two-component system se 89.0 22 0.00074 36.2 32.6 207 172-384 212-447 (758)
339 3mvd_K Regulator of chromosome 88.9 15 0.00052 34.4 34.5 190 193-384 75-321 (423)
340 2rhk_C Cleavage and polyadenyl 88.2 0.23 8E-06 33.9 2.1 45 36-83 24-70 (72)
341 3f7f_A Nucleoporin NUP120; nuc 87.8 8.1 0.00028 38.9 13.5 113 273-387 163-307 (729)
342 3kya_A Putative phosphatase; s 87.6 21 0.00071 34.4 26.3 146 154-300 143-341 (496)
343 2rpp_A Muscleblind-like protei 87.3 0.12 4E-06 37.0 0.0 23 58-80 51-73 (89)
344 3d2n_A Muscleblind-like protei 86.5 0.16 5.4E-06 35.8 0.4 45 36-80 17-65 (83)
345 2rpp_A Muscleblind-like protei 86.2 0.17 5.6E-06 36.2 0.4 24 58-81 17-42 (89)
346 2e5s_A Otthump00000018578; ZF- 86.0 0.11 3.8E-06 37.9 -0.6 24 57-80 19-44 (98)
347 1tl2_A L10, protein (tachylect 86.0 5.4 0.00018 33.9 9.6 99 194-296 42-159 (236)
348 3d2q_A Muscleblind-like protei 85.9 0.18 6E-06 34.3 0.4 24 57-80 5-30 (70)
349 3mvd_K Regulator of chromosome 85.3 24 0.00082 32.9 28.7 150 234-385 75-271 (423)
350 2cqe_A KIAA1064 protein; CCCH 83.7 0.34 1.1E-05 35.4 1.1 24 56-79 11-35 (98)
351 1a12_A RCC1, regulator of chro 80.0 38 0.0013 31.5 23.3 191 193-386 111-366 (413)
352 2d9n_A Cleavage and polyadenyl 78.9 1.1 3.9E-05 30.9 2.3 44 37-83 19-64 (77)
353 4gq2_M Nucleoporin NUP120; bet 78.3 13 0.00043 39.3 11.2 40 194-233 237-276 (950)
354 3sre_A PON1, serum paraoxonase 77.6 42 0.0015 30.6 19.0 121 290-419 138-284 (355)
355 4gq2_M Nucleoporin NUP120; bet 71.1 24 0.00082 37.1 11.1 36 318-353 237-274 (950)
356 2ism_A Putative oxidoreductase 70.2 63 0.0021 29.2 20.5 69 154-224 35-115 (352)
357 3kci_A Probable E3 ubiquitin-p 69.1 70 0.0024 29.3 27.4 167 193-385 105-293 (389)
358 1tl2_A L10, protein (tachylect 69.0 28 0.00097 29.5 8.9 135 283-428 6-159 (236)
359 4d9s_A UVB-resistance protein 68.1 76 0.0026 29.3 28.9 193 192-386 15-254 (406)
360 1a12_A RCC1, regulator of chro 67.5 78 0.0027 29.3 34.1 190 192-384 58-313 (413)
361 3of7_A Regulator of chromosome 64.0 1E+02 0.0034 29.2 28.5 152 234-385 148-341 (473)
362 4d9s_A UVB-resistance protein 61.2 1E+02 0.0035 28.4 33.2 191 193-385 68-305 (406)
363 4fhn_B Nucleoporin NUP120; pro 60.6 16 0.00053 39.5 7.3 28 326-353 249-276 (1139)
364 1m9o_A Tristetraproline; Cys3H 60.0 3.2 0.00011 28.4 1.2 25 57-81 11-37 (77)
365 3a9g_A Putative uncharacterize 60.0 1E+02 0.0034 27.9 27.5 32 192-225 28-59 (354)
366 3s25_A Hypothetical 7-bladed b 59.9 92 0.0031 27.5 22.4 124 252-387 88-218 (302)
367 3f7f_A Nucleoporin NUP120; nuc 59.0 16 0.00055 36.8 6.4 38 193-232 222-259 (729)
368 4fhn_B Nucleoporin NUP120; pro 58.7 8 0.00027 41.7 4.6 40 194-233 239-278 (1139)
369 2cqe_A KIAA1064 protein; CCCH 50.9 4.7 0.00016 29.2 0.9 24 58-81 36-61 (98)
370 3of7_A Regulator of chromosome 41.9 2.3E+02 0.0078 26.7 25.0 191 193-386 148-406 (473)
371 3u1l_A PRE-mRNA-splicing facto 40.5 6.2 0.00021 33.9 0.2 24 58-81 70-94 (240)
372 3kci_A Probable E3 ubiquitin-p 35.6 2.5E+02 0.0087 25.4 23.0 180 205-384 11-240 (389)
373 2kkx_A Uncharacterized protein 34.7 16 0.00055 26.1 1.5 37 20-68 23-59 (102)
374 2d9m_A Zinc finger CCCH-type d 30.0 14 0.00046 24.7 0.4 24 57-80 19-43 (69)
375 2g8s_A Glucose/sorbosone dehyd 28.7 3.1E+02 0.011 24.4 24.6 30 193-222 18-47 (353)
376 1cru_A Protein (soluble quinop 28.1 3.7E+02 0.013 25.1 15.9 34 193-226 27-60 (454)
377 3s25_A Hypothetical 7-bladed b 22.9 3.8E+02 0.013 23.4 23.8 175 199-387 59-257 (302)
378 3sbq_A Nitrous-oxide reductase 20.0 1.3E+02 0.0044 29.5 5.2 50 377-431 299-353 (638)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.6e-43 Score=339.16 Aligned_cols=282 Identities=23% Similarity=0.359 Sum_probs=246.2
Q ss_pred CCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCC--ceEEeec
Q 014003 83 TLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHWL 160 (432)
Q Consensus 83 ~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 160 (432)
...+.||+++|++++|+|++.+++||+.||+|+|||+.++... +.+..+... .+++.+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~-------------------~~l~~h~~~V~~v~~~~~ 161 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-------------------RTLKGHTDSVQDISFDHS 161 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC-------------------EEECCCSSCEEEEEECTT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-------------------EEEeccCCcEEEEEEcCC
Confidence 4467899999999999999999999999999999987765431 122222223 4555666
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI 240 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~ 240 (432)
+..+++|+.|+.|++||+.+. +.+..+.+|...|.+++|+|++++|++|+.|++|++||+.+++++..+
T Consensus 162 ~~~l~sgs~D~~i~iwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~---------- 230 (410)
T 1vyh_C 162 GKLLASCSADMTIKLWDFQGF-ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF---------- 230 (410)
T ss_dssp SSEEEEEETTSCCCEEETTSS-CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE----------
T ss_pred CCEEEEEeCCCeEEEEeCCCC-ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE----------
Confidence 778999999999999999876 778889999999999999999999999999999999999998877654
Q ss_pred ECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccC
Q 014003 241 CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (432)
Q Consensus 241 ~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~ 318 (432)
.+|...|.++.++++ ++++|+.|+.|++||+.++. ....+.+|...
T Consensus 231 ---------------------------~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-----~~~~~~~h~~~ 278 (410)
T 1vyh_C 231 ---------------------------TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-----CKAELREHRHV 278 (410)
T ss_dssp ---------------------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSC
T ss_pred ---------------------------eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----eeeEecCCCce
Confidence 467788999999887 89999999999999998764 46678899999
Q ss_pred eEEEEEe----------------------CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeC
Q 014003 319 VTCLAVG----------------------GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL 374 (432)
Q Consensus 319 v~~l~~~----------------------~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~ 374 (432)
|.+++|+ +.+|++|+.|+.|++||+++++++.++.+|...|.++.++ +++|++++.
T Consensus 279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 358 (410)
T 1vyh_C 279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 358 (410)
T ss_dssp EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC
Confidence 9999995 4589999999999999999999999999999999999998 789999999
Q ss_pred CCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 375 DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 375 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
|+.|++||+.+.+.+..+..|...+..+++ +|++. +|++|+.||.|++|+++
T Consensus 359 D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~----~~~~~-~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 359 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDF----HKTAP-YVVTGSVDQTVKVWECR 410 (410)
T ss_dssp TTEEEEECCTTSCCCEEEECCSSCEEEEEE----CSSSS-CEEEEETTSEEEEEC--
T ss_pred CCeEEEEECCCCceEEEEcCCCCcEEEEEE----cCCCC-EEEEEeCCCcEEEEeCC
Confidence 999999999999999999899888877776 89998 89999999999999974
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.5e-42 Score=321.66 Aligned_cols=282 Identities=20% Similarity=0.284 Sum_probs=240.8
Q ss_pred CCCCCCCCCCCCCCCCC----ceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCce--EEe
Q 014003 85 PVSNHKKSPPSYNCPKN----NVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNV--CYH 158 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~----g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 158 (432)
.+.+|.+.|++++|+|+ +.+|+|||.||+|+||++..+... ....+..+..... .+.
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-----------------~~~~l~gh~~~v~~~~~~ 89 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-----------------LQWSLEGHQLGVVSVDIS 89 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-----------------EEEEECCCSSCEEEEEEC
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-----------------eeeeeccCCCCEEEEEEC
Confidence 45789999999999874 678999999999999986543210 0011222333333 444
Q ss_pred eccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceee
Q 014003 159 WLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS 238 (432)
Q Consensus 159 ~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~ 238 (432)
+....+++|+.|+.|++||+.++ +.+..+..|...+.+++|+|++++|++++.||+|++||+++++....+
T Consensus 90 ~~~~~l~s~s~D~~i~lWd~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~-------- 160 (321)
T 3ow8_A 90 HTLPIAASSSLDAHIRLWDLENG-KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL-------- 160 (321)
T ss_dssp SSSSEEEEEETTSEEEEEETTTT-EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE--------
T ss_pred CCCCEEEEEeCCCcEEEEECCCC-CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe--------
Confidence 55568999999999999999988 778889999999999999999999999999999999999988765543
Q ss_pred EEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccc
Q 014003 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT 316 (432)
Q Consensus 239 ~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~ 316 (432)
..+...+.+++++|+ ++++|+.||.|++||+.+++ .+..+.+|.
T Consensus 161 -----------------------------~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-----~~~~~~~h~ 206 (321)
T 3ow8_A 161 -----------------------------DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK-----LLHTLEGHA 206 (321)
T ss_dssp -----------------------------ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCCS
T ss_pred -----------------------------cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----EEEEEcccC
Confidence 355677899999998 99999999999999998864 577788999
Q ss_pred cCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEE
Q 014003 317 RPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVA 392 (432)
Q Consensus 317 ~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 392 (432)
.+|.+++|+ +++|++|+.||.|++||+++++++..+.+|...|.+++++ +.+|++++.|++|++||+.+++++..+
T Consensus 207 ~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 286 (321)
T 3ow8_A 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286 (321)
T ss_dssp SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE
Confidence 999999997 8899999999999999999999999999999999999998 689999999999999999999999988
Q ss_pred eeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 393 YTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 393 ~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
..|...+..+++ +|+++ .|++++.||.|++||++
T Consensus 287 ~~h~~~v~~v~~----s~~g~-~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 287 FDHQDQVWGVKY----NGNGS-KIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CCCSSCEEEEEE----CTTSS-EEEEEETTCCEEEEECC
T ss_pred cCCCCcEEEEEE----CCCCC-EEEEEeCCCeEEEEeCC
Confidence 889888777776 89999 89999999999999986
No 3
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1e-41 Score=322.61 Aligned_cols=291 Identities=15% Similarity=0.119 Sum_probs=225.3
Q ss_pred CCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeecc-Cce
Q 014003 86 VSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS-GNC 164 (432)
Q Consensus 86 ~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 164 (432)
...|...|.+++|+|||++|++++ |+++|+|+........+.. ... .+.......+.....+..|.. ..+
T Consensus 26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~v~~~~~s~d~~l 96 (344)
T 4gqb_B 26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCA-------APN-EGFCSAGVQTEAGVADLTWVGERGI 96 (344)
T ss_dssp CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGG-------TTC-GGGCSEEEEESSCEEEEEEETTTEE
T ss_pred cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccc-------cCC-cceeeeeeccCCCEEEEEEeCCCeE
Confidence 346777899999999999999988 9999999632111000000 000 000111112222233444433 478
Q ss_pred eeCCCCCeEEEEeCCCCc---EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE
Q 014003 165 VKGDECRFWHSWFCGEGF---TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~---~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~ 241 (432)
++|+.||.|++||+.++. .....+.+|.+.|++++|+|++++|++|+.|++|++||+++++++..+
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~----------- 165 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY----------- 165 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-----------
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE-----------
Confidence 999999999999997752 223346699999999999999999999999999999999998877654
Q ss_pred CCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceee--eccc
Q 014003 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALL--KGHT 316 (432)
Q Consensus 242 ~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~--~~h~ 316 (432)
.+|...|.+++|+++ ++++++.|++|++||+++++. ...+ ..|.
T Consensus 166 --------------------------~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-----~~~~~~~~~~ 214 (344)
T 4gqb_B 166 --------------------------RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP-----ASQIGCSAPG 214 (344)
T ss_dssp --------------------------CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC-----EEECC----C
T ss_pred --------------------------cCcCCceEEEEecCCCCCceeeeccccccccccccccce-----eeeeecceee
Confidence 578899999999876 789999999999999998753 3333 3456
Q ss_pred cCeEEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--C-CEEEEEeCCCcEEEEEcCCCCcee
Q 014003 317 RPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--D-QYLLSCSLDNTIKVWIMTEEGNLE 390 (432)
Q Consensus 317 ~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~s~dg~i~iwd~~~~~~~~ 390 (432)
..+.+++|+ +++|++|+.||.|++||+++++++.++.+|...|.+++|+ + ++|++++.|++|+|||+.+++. .
T Consensus 215 ~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-~ 293 (344)
T 4gqb_B 215 YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-F 293 (344)
T ss_dssp CCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-E
T ss_pred ccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-E
Confidence 678999996 6789999999999999999999999999999999999998 3 5899999999999999988764 4
Q ss_pred EEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 391 VAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.+.+|...+..++| +|+++.+|++++.||+|++|++++
T Consensus 294 ~~~~H~~~V~~v~~----sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 294 RSQAHRDFVRDATW----SPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp EECCCSSCEEEEEE----CSSSTTEEEEEETTSCEEEEECCC
T ss_pred EEcCCCCCEEEEEE----eCCCCeEEEEEcCCCeEEEEECCC
Confidence 56678887777666 899987899999999999999874
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-40 Score=339.19 Aligned_cols=341 Identities=14% Similarity=0.197 Sum_probs=256.7
Q ss_pred CCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCC--------CCCcccccCCCCC----------------
Q 014003 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTV--------PNKSSLDCSTGSD---------------- 139 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~--------~~~~~~~~~~~~~---------------- 139 (432)
..+.||++.|++++|+|+|++||||+.||+|+|||+....... .....+..+....
T Consensus 53 ~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~ 132 (611)
T 1nr0_A 53 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 132 (611)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEE
T ss_pred eEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEE
Confidence 3578999999999999999999999999999999986432110 0000011111000
Q ss_pred ---CCCCceeeeecCCC--ceEEeeccC-ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCC
Q 014003 140 ---DSGSKRTLERTTPK--NVCYHWLSG-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD 213 (432)
Q Consensus 140 ---~~~~~~~~~~~~~~--~~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~D 213 (432)
.......+..+... .+++.+... .+++|+.|+.|++||..+. +....+.+|.+.|.+++|+|++++|++++.|
T Consensus 133 ~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-~~~~~l~~H~~~V~~v~fspdg~~las~s~D 211 (611)
T 1nr0_A 133 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211 (611)
T ss_dssp ETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-eEeeeeccccCceEEEEECCCCCEEEEEECC
Confidence 00011122333333 344555555 5999999999999998776 7788999999999999999999999999999
Q ss_pred CcEEEEeCCCCceeEEEe--------CCCceeeEE--ECCCEEE-EEcCCeEEEEEccCCceE-----------------
Q 014003 214 GTVQLWDCHTGQSASVIN--------LGAEVGSLI--CEGPWVF-VGMPNVVKAWHIESSAEF----------------- 265 (432)
Q Consensus 214 g~v~iWd~~~~~~~~~~~--------~~~~~~~~~--~~~~~l~-~~~~~~i~vwd~~~~~~~----------------- 265 (432)
++|++||+.+++....+. +...+.++. +++.+++ ++.|+.|++||+.+++..
T Consensus 212 ~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~ 291 (611)
T 1nr0_A 212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 291 (611)
T ss_dssp SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE
T ss_pred CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE
Confidence 999999999999888873 455666666 4677665 458999999999876532
Q ss_pred ---------------------------eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccc------c--
Q 014003 266 ---------------------------SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQ------L-- 308 (432)
Q Consensus 266 ---------------------------~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~------~-- 308 (432)
.+.+|...|.+++++|+ +|++++.|+.|++||+.++...... .
T Consensus 292 ~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~ 371 (611)
T 1nr0_A 292 WTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT 371 (611)
T ss_dssp ECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEE
T ss_pred EcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEE
Confidence 23478889999999998 9999999999999998765310000 0
Q ss_pred ----------------------------------------------------------------------ceeeeccccC
Q 014003 309 ----------------------------------------------------------------------AALLKGHTRP 318 (432)
Q Consensus 309 ----------------------------------------------------------------------~~~~~~h~~~ 318 (432)
...+ .|...
T Consensus 372 ~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~ 450 (611)
T 1nr0_A 372 GIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYN 450 (611)
T ss_dssp EEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSC
T ss_pred EEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCC
Confidence 0000 13456
Q ss_pred eEEEEEe--CCEEEEEeCCCeEEEEECCCCce--EEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCC-CCceeE
Q 014003 319 VTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA--VMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTE-EGNLEV 391 (432)
Q Consensus 319 v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~-~~~~~~ 391 (432)
+.+++|+ +++|++|+.|++|++||+++++. +.. .+|...|.+++|+ +++|++++.|++|++||+.+ .+....
T Consensus 451 v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~ 529 (611)
T 1nr0_A 451 SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT 529 (611)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC
T ss_pred ceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee
Confidence 7788887 89999999999999999987654 344 6799999999998 78999999999999999987 333322
Q ss_pred -Ee-eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 392 -AY-THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 392 -~~-~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.. .|...+..++| +|+|+ +|++|+.|++|++||+++
T Consensus 530 ~~~~~H~~~V~~v~f----spdg~-~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 530 NSWTFHTAKVACVSW----SPDNV-RLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp CCCCCCSSCEEEEEE----CTTSS-EEEEEETTSCEEEEETTC
T ss_pred eeeeecccceeEEEE----CCCCC-EEEEEECCCcEEEEECCC
Confidence 22 37777766666 89999 999999999999999863
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=8e-41 Score=311.28 Aligned_cols=283 Identities=20% Similarity=0.232 Sum_probs=233.4
Q ss_pred CCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecC--CCceEEeecc
Q 014003 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTT--PKNVCYHWLS 161 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 161 (432)
.++.||++.|.+++|+|+|.+|++|+.||+|+|||+.++... +.+..+. ...+++.+..
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~-------------------~~~~~~~~~v~~~~~~~~~ 67 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV-------------------RSIQVTETPVRAGKFIARK 67 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE-------------------EEEECCSSCEEEEEEEGGG
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcee-------------------EEeeccCCcEEEEEEeCCC
Confidence 367899999999999999999999999999999987654320 1111111 1345667777
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~ 241 (432)
..+++|+.|+.|++||+.++ +.+..+.+|.+.|.+++|+|++++|++|+.|++|++||++++.....
T Consensus 68 ~~l~s~s~d~~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~------------ 134 (304)
T 2ynn_A 68 NWIIVGSDDFRIRVFNYNTG-EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ------------ 134 (304)
T ss_dssp TEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE------------
T ss_pred CEEEEECCCCEEEEEECCCC-cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh------------
Confidence 89999999999999999988 67888999999999999999999999999999999999987643321
Q ss_pred CCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccC
Q 014003 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (432)
Q Consensus 242 ~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~ 318 (432)
.+.+|...|.+++|+|+ .+++|+.|++|++||+..... ......+|...
T Consensus 135 ------------------------~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~----~~~~~~~~~~~ 186 (304)
T 2ynn_A 135 ------------------------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTLTTGQERG 186 (304)
T ss_dssp ------------------------EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC----SEEEECCCTTC
T ss_pred ------------------------hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc----cceeccCCcCc
Confidence 23678889999999973 899999999999999987643 22333456788
Q ss_pred eEEEEEe----CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEE
Q 014003 319 VTCLAVG----GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVA 392 (432)
Q Consensus 319 v~~l~~~----~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 392 (432)
+..+.+. +.+|++|+.|++|++||+++++++.++.+|...|.++.++ +++|++++.||+|++||+.+.+....+
T Consensus 187 v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~ 266 (304)
T 2ynn_A 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266 (304)
T ss_dssp EEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec
Confidence 9888884 6799999999999999999999999999999999999998 679999999999999999999988888
Q ss_pred eeccCCcceEEEeeeeCCCCCc-EEEEEeCCCeEEEeeCC
Q 014003 393 YTHNEDHGVLALGGLNDPDGNP-VLICSCNDDSVHLYELP 431 (432)
Q Consensus 393 ~~~~~~~~~~~~~~~~sp~g~~-~l~sg~~Dg~I~iwdl~ 431 (432)
..+...+..+++ +|++.. ++++|++| .+.+|++.
T Consensus 267 ~~~~~~~~~~~~----~~~~~~~~~asg~~~-g~~~~~~~ 301 (304)
T 2ynn_A 267 NVGLERSWCIAT----HPTGRKNYIASGFDN-GFTVLSLG 301 (304)
T ss_dssp CCSSSSEEEEEE----CTTCGGGCEEEEETT-EEEEEECC
T ss_pred cCCCccEEEEEE----CCCCCceEEEEecCC-ceEEEEec
Confidence 877777666655 687754 47777655 46677664
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2e-40 Score=313.52 Aligned_cols=279 Identities=19% Similarity=0.262 Sum_probs=238.5
Q ss_pred CCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCC--CceEEeecc
Q 014003 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLS 161 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 161 (432)
..+.||.+.|.+++|+|+|++|+||+.||+|+|||...+... ..+..+.. ..+++.+.+
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~-------------------~~~~~~~~~v~~~~~s~~~ 109 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV-------------------HAIPLRSSWVMTCAYAPSG 109 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE-------------------EEEECSSSCEEEEEECTTS
T ss_pred eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcc-------------------eEeecCCccEEEEEECCCC
Confidence 367899999999999999999999999999999986654321 01111111 245566777
Q ss_pred CceeeCCCCCeEEEEeCCCC---cEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceee
Q 014003 162 GNCVKGDECRFWHSWFCGEG---FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS 238 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~---~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~ 238 (432)
..+++|+.|+.|++|++.+. ......+.+|.+.|.+++|++++. +++++.|++|++||+++++.+..+
T Consensus 110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~-------- 180 (340)
T 1got_B 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTF-------- 180 (340)
T ss_dssp SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEE--------
T ss_pred CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEE--------
Confidence 79999999999999999754 356778899999999999988765 899999999999999988766544
Q ss_pred EEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccc
Q 014003 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT 316 (432)
Q Consensus 239 ~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~ 316 (432)
.+|...|.+++++|+ ++++|+.|+.|++||++++. ....+.+|.
T Consensus 181 -----------------------------~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-----~~~~~~~h~ 226 (340)
T 1got_B 181 -----------------------------TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-----CRQTFTGHE 226 (340)
T ss_dssp -----------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-----EEEEECCCS
T ss_pred -----------------------------cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe-----eEEEEcCCc
Confidence 568889999999988 89999999999999998864 467788999
Q ss_pred cCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCC--CCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCcee
Q 014003 317 RPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGH--TDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLE 390 (432)
Q Consensus 317 ~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~--~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~ 390 (432)
..|.+++|+ +++|++|+.||+|++||+++++.+..+..+ ...+.+++++ +++|++|+.|+.|++||+.+.+.+.
T Consensus 227 ~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~ 306 (340)
T 1got_B 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEee
Confidence 999999997 899999999999999999999988877533 3468899988 7899999999999999999999888
Q ss_pred EEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 391 VAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
.+.+|...+..+++ +|+|. +|++|+.||.|+|||
T Consensus 307 ~~~~h~~~v~~~~~----s~dg~-~l~s~s~D~~i~iWd 340 (340)
T 1got_B 307 VLAGHDNRVSCLGV----TDDGM-AVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECCSSCEEEEEE----CTTSS-CEEEEETTSCEEEEC
T ss_pred EeecCCCcEEEEEE----cCCCC-EEEEEcCCccEEecC
Confidence 89899988877777 89998 899999999999997
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.8e-41 Score=319.42 Aligned_cols=287 Identities=15% Similarity=0.144 Sum_probs=218.9
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCC------CCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEe
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSE------EGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYH 158 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~------Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (432)
...+|+..|.+++|||||++|||||. ||++++|+........ ........+.....|..
T Consensus 37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~---------------~~~~~~~~~~~~V~~~~ 101 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE---------------SLCTAGVQTEAGVTDVA 101 (357)
T ss_dssp ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG---------------GGCSEEEECSSCEEEEE
T ss_pred CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce---------------eEecccCCCCCCEEEEE
Confidence 34679999999999999999999997 5556666543332100 00011122222334444
Q ss_pred ecc-CceeeCCCCCeEEEEeCCCCcEE---EEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC
Q 014003 159 WLS-GNCVKGDECRFWHSWFCGEGFTM---LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA 234 (432)
Q Consensus 159 ~~~-~~~~~g~~d~~i~vw~~~~~~~~---~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~ 234 (432)
|.. +.+++++.||.|++||+.++... .....+|.+.|++++|+|++++|++|+.|++|++||+++++.+..+
T Consensus 102 ~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~---- 177 (357)
T 4g56_B 102 WVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY---- 177 (357)
T ss_dssp EETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE----
T ss_pred EcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE----
Confidence 433 36777888999999999765221 1345589999999999999999999999999999999988776654
Q ss_pred ceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCcccccee
Q 014003 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAAL 311 (432)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~ 311 (432)
..|...|.+++++++ ++++++.||.|++||+++++.. ....
T Consensus 178 ---------------------------------~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~---~~~~ 221 (357)
T 4g56_B 178 ---------------------------------NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA---TRID 221 (357)
T ss_dssp ---------------------------------CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB---CBCC
T ss_pred ---------------------------------cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee---eeee
Confidence 567889999999876 7899999999999999887531 2223
Q ss_pred eeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--C-CEEEEEeCCCcEEEEEcCC
Q 014003 312 LKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--D-QYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 312 ~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~s~dg~i~iwd~~~ 385 (432)
...|...+.+++|+ +.+|++|+.|+.|++||+++++++.++.+|...|.+++|+ + ++|++++.|++|+|||+++
T Consensus 222 ~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 222 FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred eccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 44577889999996 6789999999999999999999999999999999999997 3 6899999999999999998
Q ss_pred CCceeEEeeccCCcceEEEeeeeCC-CCCcEEEEEeCCCeEEEeeCCC
Q 014003 386 EGNLEVAYTHNEDHGVLALGGLNDP-DGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
++.+. ...|...+..++| +| ++. +|++++.||+|++|++++
T Consensus 302 ~~~~~-~~~H~~~V~~vaf----sP~d~~-~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 302 SEVFR-DLSHRDFVTGVAW----SPLDHS-KFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp CEEEE-ECCCSSCEEEEEE----CSSSTT-EEEEEETTSCEEEEECC-
T ss_pred CcEeE-ECCCCCCEEEEEE----eCCCCC-EEEEEcCCCeEEEEECCC
Confidence 76654 4478777776666 88 666 999999999999999864
No 8
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.9e-40 Score=336.81 Aligned_cols=318 Identities=18% Similarity=0.230 Sum_probs=248.1
Q ss_pred CCCCCCCCCCCCCCCCCCce-ecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCC--CceEEeec
Q 014003 84 LPVSNHKKSPPSYNCPKNNV-RVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWL 160 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~~g~-~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 160 (432)
..+.||.+.|.+++|+|++. .|+||+.|+++++|+...... ...+..|.. ..+++.+.
T Consensus 141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~-------------------~~~l~~H~~~V~~v~fspd 201 (611)
T 1nr0_A 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-------------------KSTFGEHTKFVHSVRYNPD 201 (611)
T ss_dssp BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-------------------EEEECCCSSCEEEEEECTT
T ss_pred ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE-------------------eeeeccccCceEEEEECCC
Confidence 36789999999999999997 499999999999997543211 111222222 35567777
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEe-------cccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC-
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLE-------GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL- 232 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~-------~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~- 232 (432)
+..+++|+.|+.|++||+.++ +.+..+. +|.+.|.+++|+|++++|+|++.|++|++||+.++++...+..
T Consensus 202 g~~las~s~D~~i~lwd~~~g-~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~ 280 (611)
T 1nr0_A 202 GSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280 (611)
T ss_dssp SSEEEEEETTSCEEEEETTTC-CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCEEEEEECCCcEEEEECCCC-cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence 779999999999999999887 5566663 8999999999999999999999999999999999887765542
Q ss_pred -------------------------------------------CCceeeEE--ECCCEEEE-EcCCeEEEEEccCCceEe
Q 014003 233 -------------------------------------------GAEVGSLI--CEGPWVFV-GMPNVVKAWHIESSAEFS 266 (432)
Q Consensus 233 -------------------------------------------~~~~~~~~--~~~~~l~~-~~~~~i~vwd~~~~~~~~ 266 (432)
...+.++. +++.++++ +.|+.|++||+.++....
T Consensus 281 ~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~ 360 (611)
T 1nr0_A 281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR 360 (611)
T ss_dssp SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee
Confidence 22333443 36666664 589999999987654321
Q ss_pred ec------------------------------------------------------------------------------
Q 014003 267 LD------------------------------------------------------------------------------ 268 (432)
Q Consensus 267 ~~------------------------------------------------------------------------------ 268 (432)
..
T Consensus 361 ~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~ 440 (611)
T 1nr0_A 361 VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 440 (611)
T ss_dssp CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT
T ss_pred ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCC
Confidence 10
Q ss_pred -----CCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEE
Q 014003 269 -----GPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIR 339 (432)
Q Consensus 269 -----~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~ 339 (432)
.+...+.+++++|+ ++++|+.|++|++||+..+.. ..... .+|...|++++|+ +++|++++.|++|+
T Consensus 441 ~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~---~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~ 516 (611)
T 1nr0_A 441 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV---SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVI 516 (611)
T ss_dssp EEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE---EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce---eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEE
Confidence 01234678888888 899999999999999876531 22233 6799999999997 89999999999999
Q ss_pred EEECCC-CceEEE--ecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc-e-eEEeec-cCCcceEEEeeeeCCC
Q 014003 340 VWDLDT-LEAVMT--LNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN-L-EVAYTH-NEDHGVLALGGLNDPD 411 (432)
Q Consensus 340 vwd~~~-~~~~~~--~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~-~-~~~~~~-~~~~~~~~~~~~~sp~ 411 (432)
+||+.+ ++++.. +.+|...|.+++|+ +++|++++.|++|++||+.++.. + ..+.+| ...+..++| +|+
T Consensus 517 ~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~f----s~d 592 (611)
T 1nr0_A 517 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW----LNE 592 (611)
T ss_dssp EEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE----EET
T ss_pred EEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEE----cCC
Confidence 999987 666554 34599999999998 78999999999999999988653 3 344466 566666666 788
Q ss_pred CCcEEEEEeCCCeEEEeeCC
Q 014003 412 GNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 412 g~~~l~sg~~Dg~I~iwdl~ 431 (432)
++ |++++.|++|++|+++
T Consensus 593 ~~--l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 593 TT--IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TE--EEEEETTSCEEEEECC
T ss_pred CE--EEEecCCCCEEEEecc
Confidence 86 8899999999999985
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.6e-40 Score=312.84 Aligned_cols=282 Identities=19% Similarity=0.255 Sum_probs=238.1
Q ss_pred CCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCc
Q 014003 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (432)
..+.||++.|++++|+|+|++|||||.||+|+|||........ ... ........+++.+.+..
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~----~~~-------------~~~~~v~~~~~sp~g~~ 120 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH----AVT-------------MPCTWVMACAYAPSGCA 120 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE----EEE-------------CSSSCCCEEEECTTSSE
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce----EEe-------------cCCCCEEEEEECCCCCE
Confidence 3678999999999999999999999999999999865443210 000 01112246677888889
Q ss_pred eeeCCCCCeEEEEeCCCC-----cEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceee
Q 014003 164 CVKGDECRFWHSWFCGEG-----FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS 238 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~-----~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~ 238 (432)
+++|+.|+.+++|++... ......+.+|...|.+++|+|++..|++++.|++|++||+++++.+..+
T Consensus 121 lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~-------- 192 (354)
T 2pbi_B 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF-------- 192 (354)
T ss_dssp EEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE--------
T ss_pred EEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE--------
Confidence 999999999999998532 1335567899999999999999999999999999999999998877654
Q ss_pred EEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcC----CEEEEEECCCcEEEEECCCCCCCccccceeeec
Q 014003 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN----EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKG 314 (432)
Q Consensus 239 ~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~----~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~ 314 (432)
.+|...|.++.+.+ +.+++|+.||.|++||+++++ .+..+.+
T Consensus 193 -----------------------------~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-----~~~~~~~ 238 (354)
T 2pbi_B 193 -----------------------------HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-----CVQAFET 238 (354)
T ss_dssp -----------------------------ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC-----EEEEECC
T ss_pred -----------------------------cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc-----EEEEecC
Confidence 46778888888865 289999999999999999864 4677889
Q ss_pred cccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCC--CCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc
Q 014003 315 HTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT--DAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN 388 (432)
Q Consensus 315 h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~--~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~ 388 (432)
|...|.+++|+ +++|++|+.|++|++||+++++.+..+..+. ..+.++.++ +.+|++++.|+.|++||+.+++.
T Consensus 239 h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~ 318 (354)
T 2pbi_B 239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR 318 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce
Confidence 99999999997 8999999999999999999998887776443 467888887 78999999999999999999998
Q ss_pred eeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 389 LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
+..+.+|...+..+++ +|+|+ +|++|+.||.|++|+
T Consensus 319 ~~~l~~h~~~v~~l~~----spdg~-~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 319 VSILFGHENRVSTLRV----SPDGT-AFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEECCCSSCEEEEEE----CTTSS-CEEEEETTSEEEEEC
T ss_pred EEEEECCCCcEEEEEE----CCCCC-EEEEEcCCCCEEecC
Confidence 8888889888877777 89999 899999999999996
No 10
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.8e-39 Score=314.13 Aligned_cols=319 Identities=24% Similarity=0.334 Sum_probs=267.4
Q ss_pred CCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCc
Q 014003 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (432)
..+.||.+.|.. .++++|.++++|+.||+|++|++.++... ..+..+.....|..+....
T Consensus 112 ~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~-------------------~~~~~h~~~v~~~~~~~~~ 171 (445)
T 2ovr_B 112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCL-------------------RTLVGHTGGVWSSQMRDNI 171 (445)
T ss_dssp EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEE-------------------EECCCCSSCEEEEEEETTE
T ss_pred EEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEE-------------------EEEcCCCCCEEEEEecCCE
Confidence 357889988644 46778999999999999999987654321 1122334456677777889
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC-CCceeeEEEC
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL-GAEVGSLICE 242 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~~~~~~~ 242 (432)
+++|+.|+.|++||+.++ +.+..+.+|...|.+++|+ +++|++|+.||+|++||+.+++.+..+.. ...+.++..+
T Consensus 172 l~s~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~ 248 (445)
T 2ovr_B 172 IISGSTDRTLKVWNAETG-ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 248 (445)
T ss_dssp EEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC
T ss_pred EEEEeCCCeEEEEECCcC-cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC
Confidence 999999999999999988 7889999999999999995 67899999999999999999998888864 4567777777
Q ss_pred CCEEE-EEcCCeEEEEEccCCceE-eecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeE
Q 014003 243 GPWVF-VGMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (432)
Q Consensus 243 ~~~l~-~~~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 320 (432)
+..++ ++.|+.|++||+++++.. .+.+|...|.++.+++..+++++.||.|++||+.+++ .+..+.+|...+.
T Consensus 249 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~v~ 323 (445)
T 2ovr_B 249 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-----CIHTLTGHQSLTS 323 (445)
T ss_dssp SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC-----EEEEECCCCSCEE
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCC-----EEEEEcCCcccEE
Confidence 66655 458999999999988755 5677899999999977799999999999999998864 4677889999999
Q ss_pred EEEEeCCEEEEEeCCCeEEEEECCCCceEEEecC---CCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeec-c
Q 014003 321 CLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNG---HTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTH-N 396 (432)
Q Consensus 321 ~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~ 396 (432)
++.++++++++|+.||.|++||+++++++..+.+ |...|.++.+++++|++++.||.|++||+.+++.+..+... .
T Consensus 324 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 403 (445)
T 2ovr_B 324 GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 403 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTT
T ss_pred EEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeecccc
Confidence 9999999999999999999999999999999986 88889999999999999999999999999999888777321 1
Q ss_pred CCcceEEEeeeeCCCCCcEEEEEeCCCe----EEEeeCC
Q 014003 397 EDHGVLALGGLNDPDGNPVLICSCNDDS----VHLYELP 431 (432)
Q Consensus 397 ~~~~~~~~~~~~sp~g~~~l~sg~~Dg~----I~iwdl~ 431 (432)
...........|+|++. ++++|+.||+ |.+||+.
T Consensus 404 ~~~~~~v~~~~~s~~~~-~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 404 GGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp GGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECC
T ss_pred CCCCceEEEEEecCCEE-EEEEcccCCCCccEEEEEECC
Confidence 12223334445589988 9999999998 9999986
No 11
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.7e-40 Score=318.86 Aligned_cols=288 Identities=20% Similarity=0.264 Sum_probs=238.5
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeec--CCCceEEeeccC
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERT--TPKNVCYHWLSG 162 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 162 (432)
.+.||++.|++++|+|+|++|+||+.||+|+|||...+... ..+..+ ....+++.+.+.
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~-------------------~~~~~h~~~v~~~~~s~~g~ 121 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT-------------------HAIKLHCPWVMECAFAPNGQ 121 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE-------------------EEEECCCTTCCCCEECTTSS
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc-------------------eEEecCCCCEEEEEECCCCC
Confidence 67899999999999999999999999999999986654321 111111 124567888888
Q ss_pred ceeeCCCCCeEEEEeCCCC------cEEEEEEecccCcEEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeEEEeCCCc
Q 014003 163 NCVKGDECRFWHSWFCGEG------FTMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQSASVINLGAE 235 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~------~~~~~~l~~H~~~V~~l~~~~~-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~ 235 (432)
.+++|+.|+.+++|++.+. ......+.+|.+.|.+++|.|+ +..|++|+.|++|++||+.+++.+..+....
T Consensus 122 ~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~- 200 (380)
T 3iz6_a 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF- 200 (380)
T ss_dssp EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS-
T ss_pred EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc-
Confidence 9999999999999998642 1234567899999999999886 4679999999999999999998776653211
Q ss_pred eeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcC---CEEEEEECCCcEEEEECCCCCCCccccceee
Q 014003 236 VGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN---EMLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (432)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~---~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~ 312 (432)
..+|...|.++.+++ +++++|+.|+.|++||++... +.+..+
T Consensus 201 -------------------------------~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~----~~~~~~ 245 (380)
T 3iz6_a 201 -------------------------------PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS----RAVRTY 245 (380)
T ss_dssp -------------------------------SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC----CCCEEE
T ss_pred -------------------------------CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC----cceEEE
Confidence 146788899999965 399999999999999998543 356778
Q ss_pred eccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCC-------CcEEEEEc--CCEEEEEeCCCcEEEE
Q 014003 313 KGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD-------APMSLLCW--DQYLLSCSLDNTIKVW 381 (432)
Q Consensus 313 ~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~-------~v~~~~~~--~~~l~s~s~dg~i~iw 381 (432)
.+|...|.+++|+ +++|++|+.||+|++||+++++++..+..+.. .+.+++++ +++|++|+.||.|++|
T Consensus 246 ~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vw 325 (380)
T 3iz6_a 246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW 325 (380)
T ss_dssp CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEE
T ss_pred CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEE
Confidence 8999999999997 88999999999999999999999988865533 37888887 7999999999999999
Q ss_pred EcCCCCceeEE----eeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 382 IMTEEGNLEVA----YTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 382 d~~~~~~~~~~----~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
|+...+.+..+ ..|...+..+++ +|+|+ +|++|+.||.|++|++..
T Consensus 326 d~~~~~~~~~~~~~~~~h~~~v~~l~~----s~dg~-~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 326 DTLLAEMVLNLGTLQNSHEGRISCLGL----SSDGS-ALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp ETTTCCEEEEECCSCSSCCCCCCEEEE----CSSSS-EEEEECTTSCEEEEECCS
T ss_pred ECCCCceEEEEecccCCCCCceEEEEE----CCCCC-EEEEeeCCCCEEEEecCC
Confidence 99988877666 457777777777 89999 999999999999999863
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.5e-40 Score=310.72 Aligned_cols=291 Identities=19% Similarity=0.267 Sum_probs=230.7
Q ss_pred CCCCCCC-CCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCC--CceEEeecc
Q 014003 85 PVSNHKK-SPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLS 161 (432)
Q Consensus 85 ~~~gh~~-~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 161 (432)
++.||.+ .|+.++|+|+|++||+|+.||+|+||++.+..... . ......+.. ..+++.+.+
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~----~------------~~~~~~h~~~v~~~~~sp~g 73 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC----K------------SVLSEGHQRTVRKVAWSPCG 73 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE----E------------EEECSSCSSCEEEEEECTTS
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee----e------------eeeccccCCcEEEEEECCCC
Confidence 5678988 89999999999999999999999999876542100 0 000011222 245566667
Q ss_pred CceeeCCCCCeEEEEeCCCC-cEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE
Q 014003 162 GNCVKGDECRFWHSWFCGEG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI 240 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~-~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~ 240 (432)
..+++|+.|+.+++|+...+ .+.+..+.+|...|.+++|+|++++|++|+.|++|++||+.++......
T Consensus 74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~---------- 143 (345)
T 3fm0_A 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV---------- 143 (345)
T ss_dssp SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEE----------
T ss_pred CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEE----------
Confidence 79999999999999999765 3567889999999999999999999999999999999999876432211
Q ss_pred ECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccC
Q 014003 241 CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (432)
Q Consensus 241 ~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~ 318 (432)
..+..|...|.+++|+|+ +|++|+.|+.|++||...+. ......+.+|...
T Consensus 144 ------------------------~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~---~~~~~~~~~h~~~ 196 (345)
T 3fm0_A 144 ------------------------SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD---WVCCATLEGHEST 196 (345)
T ss_dssp ------------------------EEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE---EEEEEEECCCSSC
T ss_pred ------------------------EEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC---EEEEEEecCCCCc
Confidence 124578889999999988 89999999999999987753 2345678899999
Q ss_pred eEEEEEe--CCEEEEEeCCCeEEEEECCC---------------CceEEEecC-CCCCcEEEEEc--CCEEEEEeCCCcE
Q 014003 319 VTCLAVG--GKRLYSGSMDNTIRVWDLDT---------------LEAVMTLNG-HTDAPMSLLCW--DQYLLSCSLDNTI 378 (432)
Q Consensus 319 v~~l~~~--~~~l~sgs~dg~I~vwd~~~---------------~~~~~~~~~-~~~~v~~~~~~--~~~l~s~s~dg~i 378 (432)
|.+++|+ +++|++|+.|++|++||... .+++.++.+ |...|.+++++ +..|++++.|+.|
T Consensus 197 v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i 276 (345)
T 3fm0_A 197 VWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAI 276 (345)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCE
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeE
Confidence 9999997 89999999999999999632 234556665 88889999998 6899999999999
Q ss_pred EEEEcCCCCc----eeE-----EeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 379 KVWIMTEEGN----LEV-----AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 379 ~iwd~~~~~~----~~~-----~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
++|+...... ... ...|...+..++| +|++..+|++|+.||.|++|++++
T Consensus 277 ~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~----~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 277 RVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW----NPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp EEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEE----CSSSTTEEEEEETTSCEEEEEECC
T ss_pred EEEEeCCCCCcceeeEEEEeeecccccCcEeEeEE----eCCCceEEEEcCCCCcEEEEEecC
Confidence 9999876431 111 1246666666666 898866999999999999999864
No 13
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-38 Score=321.31 Aligned_cols=309 Identities=23% Similarity=0.359 Sum_probs=260.6
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCC--CceEEeeccC
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLSG 162 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 162 (432)
.+.+|...|.+++|+|+|+++++++.|+++++|+...... +.+..+.. ..+++.+...
T Consensus 257 ~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~--------------------~~~~~h~~~v~~~~~~~~~~ 316 (577)
T 2ymu_A 257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLL--------------------QTLTGHSSSVWGVAFSPDGQ 316 (577)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE--------------------EEECCCSSCEEEEEECTTSS
T ss_pred EEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEE--------------------EEEecCCCCeEEEEECCCCC
Confidence 5678999999999999999999999999999997543211 11111221 2456677777
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEe-CCCceeeEE-
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN-LGAEVGSLI- 240 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~~~~~- 240 (432)
.+++++.|+.|++|+.... .+..+.+|...|.+++|+|++++|++++.||+|++||.. ++.+..+. +...+.++.
T Consensus 317 ~l~t~~~d~~i~~w~~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~ 393 (577)
T 2ymu_A 317 TIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAF 393 (577)
T ss_dssp EEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEECCSSCEEEEEE
T ss_pred EEEEEeCCCeEEEEeCCCC--eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEecCCCCCeEEEEE
Confidence 9999999999999998764 466789999999999999999999999999999999964 56666665 455666665
Q ss_pred -ECCCEEE-EEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccc
Q 014003 241 -CEGPWVF-VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT 316 (432)
Q Consensus 241 -~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~ 316 (432)
+++.+++ ++.|+.|++||........+.+|...|.+++++|+ ++++++.|+.|++||... +.+..+.+|.
T Consensus 394 s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~------~~~~~~~~~~ 467 (577)
T 2ymu_A 394 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG------QLLQTLTGHS 467 (577)
T ss_dssp CTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS------CEEEEEECCS
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC------CEEEEEcCCC
Confidence 4666665 55899999999766666678899999999999998 999999999999999643 2467788999
Q ss_pred cCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEE
Q 014003 317 RPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVA 392 (432)
Q Consensus 317 ~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 392 (432)
..|++++|+ +++|++++.|+.|++||. +++++..+.+|...|.+++++ +++|++++.|+.|++||. +++.+..+
T Consensus 468 ~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~ 545 (577)
T 2ymu_A 468 SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 545 (577)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE
Confidence 999999997 899999999999999995 789999999999999999998 789999999999999996 56778888
Q ss_pred eeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 393 YTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 393 ~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
.+|...+..++| +|||+ +|++++.|++|++||
T Consensus 546 ~~h~~~v~~~~f----s~dg~-~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 546 TGHSSSVWGVAF----SPDGQ-TIASASSDKTVKLWN 577 (577)
T ss_dssp ECCSSCEEEEEE----CTTSS-CEEEEETTSCEEEEC
T ss_pred cCCCCCEEEEEE----cCCCC-EEEEEeCCCEEEEeC
Confidence 899988877777 89999 889999999999997
No 14
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.5e-39 Score=298.34 Aligned_cols=281 Identities=20% Similarity=0.360 Sum_probs=234.4
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCC--CceEEeeccC
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLSG 162 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 162 (432)
.+.||.+.|.+++|+|+|++||+|+.||+++||+..++... ..+..+.. ..+++.+.+.
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~-------------------~~~~~h~~~v~~~~~~~~~~ 78 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------------------KTISGHKLGISDVAWSSDSN 78 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-------------------EEECCCSSCEEEEEECTTSS
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc-------------------hhhccCCCceEEEEEcCCCC
Confidence 66899999999999999999999999999999986654321 11112222 2455666677
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEEC
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICE 242 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~ 242 (432)
.+++|+.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++|+.|++|++||+++++.+..+
T Consensus 79 ~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------------ 145 (312)
T 4ery_A 79 LLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL------------ 145 (312)
T ss_dssp EEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE------------
T ss_pred EEEEECCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe------------
Confidence 8999999999999999887 678889999999999999999999999999999999999988766544
Q ss_pred CCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeE
Q 014003 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (432)
Q Consensus 243 ~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 320 (432)
..|...|.++.++++ ++++++.||.|++||+++++. .......+...+.
T Consensus 146 -------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~----~~~~~~~~~~~~~ 196 (312)
T 4ery_A 146 -------------------------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC----LKTLIDDDNPPVS 196 (312)
T ss_dssp -------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----EEEECCSSCCCEE
T ss_pred -------------------------cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce----eeEEeccCCCceE
Confidence 457788999999987 899999999999999988642 2222345677899
Q ss_pred EEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEE--EEc---CCEEEEEeCCCcEEEEEcCCCCceeEEe
Q 014003 321 CLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSL--LCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 321 ~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~--~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (432)
+++|+ +++|++++.||.|++||+++++++..+.+|......+ .+. +.+|++++.||.|++||+.+.+.+..+.
T Consensus 197 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 276 (312)
T 4ery_A 197 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276 (312)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh
Confidence 99997 8899999999999999999999999999887754332 222 6899999999999999999999888888
Q ss_pred eccCCcceEEEeeeeCCCCCcEEEEEe--CCCeEEEeeCC
Q 014003 394 THNEDHGVLALGGLNDPDGNPVLICSC--NDDSVHLYELP 431 (432)
Q Consensus 394 ~~~~~~~~~~~~~~~sp~g~~~l~sg~--~Dg~I~iwdl~ 431 (432)
.|...+..+++ +|++. ++++++ .|+.|++|+..
T Consensus 277 ~h~~~v~~~~~----~p~~~-~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 277 GHTDVVISTAC----HPTEN-IIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCSSCEEEEEE----CSSSS-EEEEEECTTTCCEEEEECC
T ss_pred ccCCcEEEEee----cCcCC-ceEEEEccCCccEEEecCC
Confidence 88887766666 89998 788776 69999999975
No 15
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.5e-38 Score=298.10 Aligned_cols=285 Identities=19% Similarity=0.250 Sum_probs=232.4
Q ss_pred CCCCCCCCCCCCCCCCCc-eecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCc
Q 014003 85 PVSNHKKSPPSYNCPKNN-VRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g-~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (432)
+++||++.|.+++|+|++ .+|+||+.||+|++|++.....
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~--------------------------------------- 52 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ--------------------------------------- 52 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT---------------------------------------
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc---------------------------------------
Confidence 678999999999999865 8999999999999996432110
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEe-CCCceeeEEE-
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN-LGAEVGSLIC- 241 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~~~~~~- 241 (432)
....++..+.+|...|.+++|+|++++|++|+.|++|++||+++++....+. +...+.++..
T Consensus 53 ----------------~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~ 116 (319)
T 3frx_A 53 ----------------KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116 (319)
T ss_dssp ----------------EEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred ----------------cccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEc
Confidence 0014567889999999999999999999999999999999999999988877 4456666664
Q ss_pred -CCCEEE-EEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--------EEEEEECCCcEEEEECCCCCCCcccccee
Q 014003 242 -EGPWVF-VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--------MLFAGAQDGNILVWKGIPNTQNPFQLAAL 311 (432)
Q Consensus 242 -~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--------~l~~g~~dg~i~~wd~~~~~~~~~~~~~~ 311 (432)
++.+++ ++.|+.|++||++......+.+|...|.++.+.|. .+++++.|+.|++||+.+.. ....
T Consensus 117 ~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----~~~~ 191 (319)
T 3frx_A 117 KKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-----IEAD 191 (319)
T ss_dssp TTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE-----EEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-----hhee
Confidence 555555 55899999999998877888999999999999874 79999999999999998753 4667
Q ss_pred eeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCC
Q 014003 312 LKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEG 387 (432)
Q Consensus 312 ~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~ 387 (432)
+.+|...|.+++|+ +++|++|+.||.|++||+++++++..+..+ ..+.+++++ +.+|++++ ++.+++|++....
T Consensus 192 ~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~-~~~i~v~~~~~~~ 269 (319)
T 3frx_A 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQY 269 (319)
T ss_dssp ECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEE-TTEEEEEEETTEE
T ss_pred ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEc-CCCcEEEEeCcCe
Confidence 88999999999997 899999999999999999999999999854 678999998 56777666 4569999998766
Q ss_pred ceeEEeeccC----CcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 388 NLEVAYTHNE----DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 388 ~~~~~~~~~~----~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.+..+..+.. .......++.|+|+|+ +|++|+.||.|++||+.|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 270 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEEECCCCTTCCGGGCCCEEEEEECTTSS-EEEEEETTSCEEEEEEEE
T ss_pred eeeccCccccccccCcCcceeEEEECCCCC-EEEEeecCceEEEEEEee
Confidence 5554432211 1112233445699999 999999999999999864
No 16
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-38 Score=306.12 Aligned_cols=295 Identities=23% Similarity=0.348 Sum_probs=232.6
Q ss_pred CCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCcee--eeec--CCCceEEeeccCc
Q 014003 88 NHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRT--LERT--TPKNVCYHWLSGN 163 (432)
Q Consensus 88 gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~ 163 (432)
+|.+.|.+++|+|||++||+|+ |++++||++.++........... .... ...... .... ....+++.+.+..
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~--~~~~-~~~~~~~~~~~~~~~v~~v~~s~dg~~ 137 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA--ANKD-PENLNTSSSPSSDLYIRSVCFSPDGKF 137 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------CCCCBEEEEEECTTSSE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccc--cccc-cccccccccCCCceeEEEEEECCCCCE
Confidence 6999999999999999999987 89999999876543110000000 0000 000000 0000 1135677777889
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECC
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~ 243 (432)
+++|+.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|++|++||++++++...+.
T Consensus 138 l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~------------ 204 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS------------ 204 (393)
T ss_dssp EEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE------------
T ss_pred EEEEcCCCeEEEEECCCC-cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE------------
Confidence 999999999999999887 7788999999999999999999999999999999999999887765543
Q ss_pred CEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcC-C--EEEEEECCCcEEEEECCCCCCCccccceee-------e
Q 014003 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN-E--MLFAGAQDGNILVWKGIPNTQNPFQLAALL-------K 313 (432)
Q Consensus 244 ~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~-~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~-------~ 313 (432)
+...+.++++++ + ++++|+.||.|++||+.++.. +..+ .
T Consensus 205 --------------------------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~-----~~~~~~~~~~~~ 253 (393)
T 1erj_A 205 --------------------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL-----VERLDSENESGT 253 (393)
T ss_dssp --------------------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE-----EEEEC------C
T ss_pred --------------------------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcE-----EEeecccccCCC
Confidence 234577888877 3 899999999999999987642 2222 5
Q ss_pred ccccCeEEEEEe--CCEEEEEeCCCeEEEEECCC------------CceEEEecCCCCCcEEEEEc--CCEEEEEeCCCc
Q 014003 314 GHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDT------------LEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNT 377 (432)
Q Consensus 314 ~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~------------~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~ 377 (432)
+|...|.+++|+ +++|++|+.||.|++||+++ +.+...+.+|...|.+++++ +.+|++++.|+.
T Consensus 254 ~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~ 333 (393)
T 1erj_A 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 333 (393)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe
Confidence 799999999997 88999999999999999976 34567788999999999998 689999999999
Q ss_pred EEEEEcCCCCceeEEeeccCCcceEEEee--eeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 378 IKVWIMTEEGNLEVAYTHNEDHGVLALGG--LNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 378 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
|++||+.+++.+..+.+|...+..+++.. .++|+++ +|++|+.||.|+||+++
T Consensus 334 v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~-~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 334 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYK 388 (393)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEE
T ss_pred EEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCC-EEEEECCCCcEEECccc
Confidence 99999999999988889988887777742 2345777 99999999999999974
No 17
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-39 Score=304.29 Aligned_cols=287 Identities=20% Similarity=0.270 Sum_probs=217.3
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceee-ee-cCC--CceEEeec
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTL-ER-TTP--KNVCYHWL 160 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~--~~~~~~~~ 160 (432)
.+.||++.|++++|+++ +||+|+.||+|+||++..+.... ...+ .. |.. ..+++.+.
T Consensus 9 ~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~-----------------~~~~~~~~h~~~v~~v~~sp~ 69 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTL-----------------IDVLDETAHKKAIRSVAWRPH 69 (330)
T ss_dssp EEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEE-----------------EEEECTTCCCSCEEEEEECTT
T ss_pred eeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEE-----------------EEEEecCCccCCEEEEEECCC
Confidence 57899999999999988 99999999999999876532100 0001 00 111 34566677
Q ss_pred cCceeeCCCCCeEEEEeCCC------CcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC-ceeEEEeCC
Q 014003 161 SGNCVKGDECRFWHSWFCGE------GFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-QSASVINLG 233 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~------~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~-~~~~~~~~~ 233 (432)
...+++|+.|+.|++|++.. ..+.+..+.+|.+.|.+++|+|++++|++|+.|++|++||+... +....
T Consensus 70 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~---- 145 (330)
T 2hes_X 70 TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYEC---- 145 (330)
T ss_dssp SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEE----
T ss_pred CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEE----
Confidence 77899999999999999853 23567889999999999999999999999999999999999532 21110
Q ss_pred CceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCcccccee
Q 014003 234 AEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAAL 311 (432)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~ 311 (432)
...+.+|...|.++.|+|+ +|++|+.|++|++||...+. .+.+..
T Consensus 146 ------------------------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~ 192 (330)
T 2hes_X 146 ------------------------------ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAV 192 (330)
T ss_dssp ------------------------------EEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEE
T ss_pred ------------------------------EEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEE
Confidence 0134678899999999988 99999999999999987653 245778
Q ss_pred eeccccCeEEEEEe----CCEEEEEeCCCeEEEEECCCC--------ceEEEecC-CCCCcEEEEEc-CCEEEEEeCCCc
Q 014003 312 LKGHTRPVTCLAVG----GKRLYSGSMDNTIRVWDLDTL--------EAVMTLNG-HTDAPMSLLCW-DQYLLSCSLDNT 377 (432)
Q Consensus 312 ~~~h~~~v~~l~~~----~~~l~sgs~dg~I~vwd~~~~--------~~~~~~~~-~~~~v~~~~~~-~~~l~s~s~dg~ 377 (432)
+.+|...|.+++|+ +.+|++|+.|++|++||++++ .+...+.+ |...|.+++++ +.+|++++.||.
T Consensus 193 ~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~ 272 (330)
T 2hes_X 193 LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGV 272 (330)
T ss_dssp ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSC
T ss_pred ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCE
Confidence 88999999999997 358999999999999998765 45556665 88999999998 679999999999
Q ss_pred EEEEEcCCCCc--eeEE-eeccC-CcceEEEeeeeCC--CCCcEEEEEeCCCeEEEeeCCC
Q 014003 378 IKVWIMTEEGN--LEVA-YTHNE-DHGVLALGGLNDP--DGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 378 i~iwd~~~~~~--~~~~-~~~~~-~~~~~~~~~~~sp--~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
|++||..+++. .... ..|.. .+..+++ +| +++ +|++|+.||.|++||+++
T Consensus 273 v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~----~~~~~~~-~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 273 LAVYEEVDGEWKVFAKRALCHGVYEINVVKW----LELNGKT-ILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEEETTEEEEEEEESCTTTTSCEEEEEE----C-----C-CEEEEETTSEEEEEEC--
T ss_pred EEEEEcCCCceEEEeccccccccceEEEEEE----ecCCCce-EEEEecCCCcEEEEEecc
Confidence 99999976632 2222 23444 4555555 77 566 899999999999999863
No 18
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-38 Score=307.66 Aligned_cols=330 Identities=13% Similarity=0.167 Sum_probs=260.5
Q ss_pred CCCCCCCCCCCCCCCce-ecCCCCCCCccccccc----CCCCCCCCCCcccccCCCCCCCCCceeeeecC--CCceEEee
Q 014003 87 SNHKKSPPSYNCPKNNV-RVSSGSEEGTTHVQNR----ENPDRTVPNKSSLDCSTGSDDSGSKRTLERTT--PKNVCYHW 159 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~-~las~~~Dg~i~iW~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 159 (432)
..|.++|.+++|+|+|+ +||+|+.||+|+||++ .++...+.......+... . ........+. ...+++.+
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP-F--ALSASSGKTTNQVTCLAWSH 118 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC-C--CCC------CBCEEEEEECT
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc-c--cccccccCCCCceEEEEEcC
Confidence 44668999999999999 9999999999999998 554410000000000000 0 0000001112 23455566
Q ss_pred ccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCc----
Q 014003 160 LSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE---- 235 (432)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~---- 235 (432)
.+..+++|+.|+.|++|+. ++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.....
T Consensus 119 ~~~~l~~~~~dg~i~i~~~-~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWNK-TG-ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp TSSEEEEEETTSCEEEEET-TS-CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred CCCEEEEEeCCCeEEEEeC-CC-CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 6678999999999999994 33 66788999999999999999999999999999999999999998888875543
Q ss_pred ------------eeeE--EECCCEEEEEcCCeEEEEEccCCceE-eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEEC
Q 014003 236 ------------VGSL--ICEGPWVFVGMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKG 298 (432)
Q Consensus 236 ------------~~~~--~~~~~~l~~~~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~ 298 (432)
+.++ .+++.+++++.++.|++||+.+++.. ....|...|.+++++++ ++++++.||.|++||+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 276 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHG 276 (425)
T ss_dssp ---------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECS
T ss_pred eeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 3333 35666777779999999999987654 56688999999999987 8999999999999999
Q ss_pred CCCCCCccccceeeeccccCeEEEEEe-CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCC
Q 014003 299 IPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLD 375 (432)
Q Consensus 299 ~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d 375 (432)
..+. ....+..|...|.+++|+ ..++++++.||.|++||+++++++..+..|...+.++.++ +++|++++.|
T Consensus 277 ~~~~-----~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 351 (425)
T 1r5m_A 277 GNGN-----SQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD 351 (425)
T ss_dssp SSBS-----CSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETT
T ss_pred CCCc-----cceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECC
Confidence 8764 467778899999999998 3399999999999999999999999999999999999998 7899999999
Q ss_pred CcEEEEEcCCCC--------------------ceeEEeeccC--CcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 376 NTIKVWIMTEEG--------------------NLEVAYTHNE--DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 376 g~i~iwd~~~~~--------------------~~~~~~~~~~--~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
|.|++||+.+.+ .+..+..|.. .+..+.+ +|+++ +|++++.||.|++||++
T Consensus 352 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----s~~~~-~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 352 GQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSW----NCAGN-KISVAYSLQEGSVVAIP 424 (425)
T ss_dssp SCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEE----CTTSS-EEEEEESSSCCEEEECC
T ss_pred CeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEc----cCCCc-eEEEEecCceEEEEeec
Confidence 999999998877 6666666655 6666665 89999 89999999999999986
No 19
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.3e-38 Score=296.23 Aligned_cols=282 Identities=20% Similarity=0.265 Sum_probs=231.8
Q ss_pred CCCCCCCCCCCCCCCCC-ceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCc
Q 014003 85 PVSNHKKSPPSYNCPKN-NVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~-g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (432)
+|+||++.|++++|+|+ +++|||||.||+|+|||+.....
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~--------------------------------------- 73 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET--------------------------------------- 73 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS---------------------------------------
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc---------------------------------------
Confidence 68999999999999997 68999999999999997654321
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCcee-eEE--
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG-SLI-- 240 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~-~~~-- 240 (432)
....+...+.+|...|.+++|+|++++|++++.|+.|++|+................. ...
T Consensus 74 ----------------~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (340)
T 4aow_A 74 ----------------NYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS 137 (340)
T ss_dssp ----------------CSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred ----------------ccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEe
Confidence 0014466789999999999999999999999999999999999988777776554333 222
Q ss_pred ECCC-EEEEEcCCeEEEEEccCCceE--eecCCcCCEEEEEEcCC----EEEEEECCCcEEEEECCCCCCCccccceeee
Q 014003 241 CEGP-WVFVGMPNVVKAWHIESSAEF--SLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQNPFQLAALLK 313 (432)
Q Consensus 241 ~~~~-~l~~~~~~~i~vwd~~~~~~~--~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~ 313 (432)
..+. +++++.|+.+++||+...... ....|...+..+.+.++ .+++++.|+.|++||+.++. ....+.
T Consensus 138 ~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-----~~~~~~ 212 (340)
T 4aow_A 138 SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-----LKTNHI 212 (340)
T ss_dssp TTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-----EEEEEC
T ss_pred ecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-----eeeEec
Confidence 2444 555668999999999877654 45678889999999865 78899999999999998864 567788
Q ss_pred ccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEcCCCCcee
Q 014003 314 GHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLE 390 (432)
Q Consensus 314 ~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~ 390 (432)
+|..+|++++|+ +++|++|+.||.|++||+++.+++..+..+ ..+.++.++ +.++++++.|+.|++||+++...+.
T Consensus 213 ~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 291 (340)
T 4aow_A 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVD 291 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEE
Confidence 999999999997 889999999999999999999999998855 568888888 5678888899999999998876554
Q ss_pred EEe---------eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 391 VAY---------THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 391 ~~~---------~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.+. .|...+..+++ +|+|+ +|++|+.||.|+|||++|
T Consensus 292 ~~~~~~~~~~~~~h~~~v~~l~~----s~dg~-~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 292 ELKQEVISTSSKAEPPQCTSLAW----SADGQ-TLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp EECCC-------CCCCCEEEEEE----CTTSS-EEEEEETTSCEEEEEEEC
T ss_pred eccccceeeeccCCCCCEEEEEE----CCCCC-EEEEEeCCCEEEEEeCCC
Confidence 443 34444555544 89999 999999999999999875
No 20
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.4e-37 Score=314.43 Aligned_cols=312 Identities=21% Similarity=0.338 Sum_probs=260.9
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCC--CceEEeeccC
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLSG 162 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 162 (432)
.+.+|...|.+++|+|+|++|++++.||++++|+...... ..+..+.. ..+++.+...
T Consensus 216 ~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~--------------------~~~~~~~~~v~~v~~~~d~~ 275 (577)
T 2ymu_A 216 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL--------------------QTLTGHSSSVNGVAFRPDGQ 275 (577)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE--------------------EEECCCSSCEEEEEECTTSS
T ss_pred EEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEE--------------------EEEecCCCCEEEEEEcCCCC
Confidence 4578999999999999999999999999999997432111 01111111 2455666777
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI-- 240 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~-- 240 (432)
.+++++.|+.|++|+... +.+..+.+|...|.+++|+|++++|++++.|++|++||...........+...+.++.
T Consensus 276 ~l~~~~~d~~i~~w~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s 353 (577)
T 2ymu_A 276 TIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFS 353 (577)
T ss_dssp EEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEEC
T ss_pred EEEEEeCCCEEEEEeCCC--cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEEC
Confidence 899999999999999754 5577889999999999999999999999999999999987655444333455666655
Q ss_pred ECCCEEEEE-cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeecccc
Q 014003 241 CEGPWVFVG-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 241 ~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
+++.+++++ .++.+++|+........+..|...|.+++++++ ++++++.|+.|++||... +....+.+|..
T Consensus 354 ~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~------~~~~~~~~~~~ 427 (577)
T 2ymu_A 354 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------QLLQTLTGHSS 427 (577)
T ss_dssp TTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC------CEEEEEECCSS
T ss_pred CCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC------CEEEEecCCCC
Confidence 467777655 789999999776666678899999999999998 899999999999999543 35677889999
Q ss_pred CeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEe
Q 014003 318 PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 318 ~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (432)
.|++++|+ +++|++++.|+.|++||. +++.+..+.+|...+.+++++ +++|++++.|+.|++||. +++.+..+.
T Consensus 428 ~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~ 505 (577)
T 2ymu_A 428 SVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 505 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred CeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe
Confidence 99999997 889999999999999996 678899999999999999998 789999999999999995 567788888
Q ss_pred eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 394 THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 394 ~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.|...+..+++ +|+|+ +|++++.||.|++||++
T Consensus 506 ~h~~~v~~l~~----s~dg~-~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 506 GHSSSVRGVAF----SPDGQ-TIASASDDKTVKLWNRN 538 (577)
T ss_dssp CCSSCEEEEEE----CTTSS-CEEEEETTSEEEEECTT
T ss_pred CCCCCEEEEEE----cCCCC-EEEEEECcCEEEEEeCC
Confidence 89888877776 89999 89999999999999964
No 21
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-38 Score=308.15 Aligned_cols=318 Identities=15% Similarity=0.181 Sum_probs=251.2
Q ss_pred CCCCCCCCCCCce-ecCCC----------CCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEee
Q 014003 91 KSPPSYNCPKNNV-RVSSG----------SEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHW 159 (432)
Q Consensus 91 ~~v~~~~~s~~g~-~las~----------~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (432)
..|.+++|+|+|+ ++|+| +.||+|+||++..+....+.. . .........+++.+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~-~--------------~~~~~~v~~~~~s~ 77 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA-S--------------LQVDSKFNDLDWSH 77 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC-C--------------CCCSSCEEEEEECS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE-E--------------EecCCceEEEEECC
Confidence 4679999999998 89999 899999999987654210000 0 00001113556666
Q ss_pred ccCceeeCCCCCeEEEEeCCC---CcEEEEEEecccCcEEEEEecCC-CCEEEEEeCCCcEEEEeCCCCc------eeEE
Q 014003 160 LSGNCVKGDECRFWHSWFCGE---GFTMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQ------SASV 229 (432)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~---~~~~~~~l~~H~~~V~~l~~~~~-~~~l~s~s~Dg~v~iWd~~~~~------~~~~ 229 (432)
....+++|+.|+.|++|++.+ +.+.+..+.+|...|.+++|+|+ +++|++++.||+|++||+.+++ ....
T Consensus 78 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 157 (416)
T 2pm9_A 78 NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT 157 (416)
T ss_dssp SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC
T ss_pred CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc
Confidence 777999999999999999977 34578889999999999999998 8999999999999999999886 3332
Q ss_pred E----eCCCceeeEEE--C-CCEEEEE-cCCeEEEEEccCCceEe-ecCC------cCCEEEEEEcCC---EEEEEECCC
Q 014003 230 I----NLGAEVGSLIC--E-GPWVFVG-MPNVVKAWHIESSAEFS-LDGP------VGEVYSMVVANE---MLFAGAQDG 291 (432)
Q Consensus 230 ~----~~~~~~~~~~~--~-~~~l~~~-~~~~i~vwd~~~~~~~~-~~~~------~~~v~~l~~~~~---~l~~g~~dg 291 (432)
. .+...+.++.. + +.+++++ .++.|++||+++++... +..+ ...+.+++++|+ ++++++.|+
T Consensus 158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 237 (416)
T 2pm9_A 158 PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD 237 (416)
T ss_dssp CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS
T ss_pred cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC
Confidence 2 24455666664 4 4566654 88999999999987653 3333 788999999986 799999999
Q ss_pred ---cEEEEECCCCCCCccccceeee-ccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEE
Q 014003 292 ---NILVWKGIPNTQNPFQLAALLK-GHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLC 364 (432)
Q Consensus 292 ---~i~~wd~~~~~~~~~~~~~~~~-~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~ 364 (432)
.|++||++++. .+...+. +|...|.+++|+ +++|++++.||.|++||+++++++..+.+|...+.++.+
T Consensus 238 ~~~~i~~~d~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~ 313 (416)
T 2pm9_A 238 NDPSILIWDLRNAN----TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKF 313 (416)
T ss_dssp SSCCCCEEETTSTT----SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEE
T ss_pred CCceEEEEeCCCCC----CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEE
Confidence 99999999863 2456677 899999999995 789999999999999999999999999999999999999
Q ss_pred c--C-CEEEEEeCCCcEEEEEcCCCCceeEEee-----------------------------------ccCCcceEEEee
Q 014003 365 W--D-QYLLSCSLDNTIKVWIMTEEGNLEVAYT-----------------------------------HNEDHGVLALGG 406 (432)
Q Consensus 365 ~--~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~ 406 (432)
+ + .+|++++.|+.|++||+.+......... +...+..++
T Consensus 314 s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 390 (416)
T 2pm9_A 314 APEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAH--- 390 (416)
T ss_dssp CTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCE---
T ss_pred CCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceE---
Confidence 8 4 7999999999999999987654322111 223333344
Q ss_pred eeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 407 LNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 407 ~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
|+|+|+ +|++++.||.|+||++.+
T Consensus 391 -~s~dg~-~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 391 -WAFGGK-LVQITPDGKGVSITNPKI 414 (416)
T ss_dssp -EETTTE-EECBCTTSSCBCCBCCCC
T ss_pred -EeeCCe-EEEEeCCCCeEEEEEecc
Confidence 489999 999999999999999875
No 22
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.2e-37 Score=292.97 Aligned_cols=283 Identities=19% Similarity=0.235 Sum_probs=222.5
Q ss_pred CCCCCCCCCCCCCC-----CC-CceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEe
Q 014003 85 PVSNHKKSPPSYNC-----PK-NNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYH 158 (432)
Q Consensus 85 ~~~gh~~~v~~~~~-----s~-~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (432)
.+.||++.|++++| ++ +|.+||||+.||+|+||++...... .
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~-----------~--------------------- 63 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN-----------G--------------------- 63 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS-----------S---------------------
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc-----------c---------------------
Confidence 67899999999998 66 9999999999999999976543210 0
Q ss_pred eccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEe-CCCcee
Q 014003 159 WLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN-LGAEVG 237 (432)
Q Consensus 159 ~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~~ 237 (432)
....+...+.+|...|.+++|+|++.+|++|+.|++|++||+++++.+..+. +...+.
T Consensus 64 ---------------------~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~ 122 (343)
T 2xzm_R 64 ---------------------YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVY 122 (343)
T ss_dssp ---------------------BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEE
T ss_pred ---------------------ccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEE
Confidence 0014466789999999999999999999999999999999999999988887 455666
Q ss_pred eEE--ECCCEEE-EEcCCeEEEEEccCCceEeec---CCcCCEEEEEEcCC------------EEEEEECCCcEEEEECC
Q 014003 238 SLI--CEGPWVF-VGMPNVVKAWHIESSAEFSLD---GPVGEVYSMVVANE------------MLFAGAQDGNILVWKGI 299 (432)
Q Consensus 238 ~~~--~~~~~l~-~~~~~~i~vwd~~~~~~~~~~---~~~~~v~~l~~~~~------------~l~~g~~dg~i~~wd~~ 299 (432)
++. +++.+++ ++.|+.|++||+......... .|...|.++.++|+ ++++++.||.|++||..
T Consensus 123 ~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 202 (343)
T 2xzm_R 123 SVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN 202 (343)
T ss_dssp EEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT
T ss_pred EEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC
Confidence 666 4666655 558999999999865544433 68889999999874 69999999999999943
Q ss_pred CCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECC-CCceEEEecCCCCCcEEEEEc-CCEEEEEeCC
Q 014003 300 PNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLD-TLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLD 375 (432)
Q Consensus 300 ~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~-~~~~~~~~~~~~~~v~~~~~~-~~~l~s~s~d 375 (432)
. +....+.+|...|.+++|+ +++|++|+.||.|++||++ ...+...+. +...|.+++++ +..+++++.|
T Consensus 203 ~------~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d 275 (343)
T 2xzm_R 203 F------QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTD 275 (343)
T ss_dssp T------EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEES
T ss_pred C------ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECC
Confidence 2 3466788999999999997 8999999999999999994 444445543 45569999998 3344456678
Q ss_pred CcEEEEEcCCCCcee--EEe-----------eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 376 NTIKVWIMTEEGNLE--VAY-----------THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 376 g~i~iwd~~~~~~~~--~~~-----------~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+.|++||+.+.+... .+. .|...+.. +.|+|+|+ +|++|+.||.|++|++++
T Consensus 276 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~sp~g~-~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 276 QGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTS----LAWNALGK-KLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp SCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEE----EEECSSSC-CEEEEETTSEEEEEEEEE
T ss_pred CCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEE----EEECCCCC-eEEEecCCceEEEEEEEc
Confidence 899999998776543 222 23333434 44599999 899999999999999753
No 23
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2e-36 Score=293.70 Aligned_cols=316 Identities=16% Similarity=0.176 Sum_probs=243.9
Q ss_pred CCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCC
Q 014003 89 HKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGD 168 (432)
Q Consensus 89 h~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 168 (432)
....+.+++|+|+|++|++++.||++++|++.......... . . .. ....++.+.+..+++|+
T Consensus 55 ~~~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~-------~----~--~~-----~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 55 GVDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK-------R----A--DY-----TAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CCBCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC-------S----C--CE-----EEEEEECSSSCEEEEEE
T ss_pred ccccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe-------c----C--Cc-----eEEEEEecCCCEEEEEE
Confidence 34456799999999999999999999999876543311000 0 0 00 01234455667899999
Q ss_pred CCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEe-CCCceeeEE--ECCCE
Q 014003 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN-LGAEVGSLI--CEGPW 245 (432)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~~~~~--~~~~~ 245 (432)
.|+.|++||+.++ +....+.+|.+.|++++|+|++++|++++.|++|++||+.+++.+..+. +...+.++. +++.+
T Consensus 117 ~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 195 (420)
T 3vl1_A 117 TEGDIKVLDSNFN-LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195 (420)
T ss_dssp TTSCEEEECTTSC-EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTE
T ss_pred CCCCEEEEeCCCc-ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCE
Confidence 9999999999877 7777888999999999999999999999999999999999999888887 455666665 46666
Q ss_pred EE-EEcCCeEEEEEccCCceEeec----CCcCCEEEEEE---------------------cCC--EEEEEECCCcEEEEE
Q 014003 246 VF-VGMPNVVKAWHIESSAEFSLD----GPVGEVYSMVV---------------------ANE--MLFAGAQDGNILVWK 297 (432)
Q Consensus 246 l~-~~~~~~i~vwd~~~~~~~~~~----~~~~~v~~l~~---------------------~~~--~l~~g~~dg~i~~wd 297 (432)
++ ++.|+.|++||+++++..... .+...+.++.+ +++ ++++|+.||.|++||
T Consensus 196 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 275 (420)
T 3vl1_A 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHN 275 (420)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEE
T ss_pred EEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEE
Confidence 55 558999999999988765332 34455555554 555 899999999999999
Q ss_pred CCCCCCCccccceeeeccccCeEEEEEe--CC-EEEEEeCCCeEEEEECCCCce-EEEecC-CCCCcEEEEEc-CCEEEE
Q 014003 298 GIPNTQNPFQLAALLKGHTRPVTCLAVG--GK-RLYSGSMDNTIRVWDLDTLEA-VMTLNG-HTDAPMSLLCW-DQYLLS 371 (432)
Q Consensus 298 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~sgs~dg~I~vwd~~~~~~-~~~~~~-~~~~v~~~~~~-~~~l~s 371 (432)
++++.. .......|...|.+++|+ +. +|++|+.||.|++||+++++. +..+.+ |...+.++.+. +++|++
T Consensus 276 ~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s 351 (420)
T 3vl1_A 276 VFSKEQ----TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVS 351 (420)
T ss_dssp TTTCCE----EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEE
T ss_pred CCCCce----eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEE
Confidence 988742 333345688999999997 55 999999999999999998754 777776 56667777665 679999
Q ss_pred EeCCCcEEEEEcCCCC---------ceeEEeeccCCcceEEEeeeeCCCCC---cEEEEEeCCCeEEEeeCCC
Q 014003 372 CSLDNTIKVWIMTEEG---------NLEVAYTHNEDHGVLALGGLNDPDGN---PVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 372 ~s~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~sp~g~---~~l~sg~~Dg~I~iwdl~s 432 (432)
++.|+.|++||+.... ....+..+...+..+++ +|+++ .+++ .+.+|.+.+|+++.
T Consensus 352 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----s~~~~~~g~l~a-~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 352 SGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCY----VSDDESNGEVLE-VGKNNFCALYNLSN 419 (420)
T ss_dssp ETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEE----ECCSSSSCEEEE-EETTTEEEEEESCC
T ss_pred ecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEE----ccCCCCcceEEE-EcCCceEEEEeccC
Confidence 9999999999998742 23344556667777776 78776 4555 55789999999863
No 24
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-35 Score=280.54 Aligned_cols=277 Identities=16% Similarity=0.212 Sum_probs=240.0
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.+.||++.|.+++|+|+|++|++|+.||.|+||++.+
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~------------------------------------------- 63 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN------------------------------------------- 63 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT-------------------------------------------
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-------------------------------------------
Confidence 5789999999999999999999999998888885332
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--EC
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CE 242 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~~ 242 (432)
+ +.+..+.+|...|.+++|+|++++|++++.||+|++||+.+++.+..+.....+.++. ++
T Consensus 64 ----------------~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 126 (369)
T 3zwl_B 64 ----------------G-ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPC 126 (369)
T ss_dssp ----------------C-CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTT
T ss_pred ----------------c-hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccC
Confidence 2 3466678999999999999999999999999999999999999999999888887776 46
Q ss_pred CCEEEEE-cC-----CeEEEEEccCCce------------EeecCCcC--CEEEEEEcCC--EEEEEECCCcEEEEECCC
Q 014003 243 GPWVFVG-MP-----NVVKAWHIESSAE------------FSLDGPVG--EVYSMVVANE--MLFAGAQDGNILVWKGIP 300 (432)
Q Consensus 243 ~~~l~~~-~~-----~~i~vwd~~~~~~------------~~~~~~~~--~v~~l~~~~~--~l~~g~~dg~i~~wd~~~ 300 (432)
+.+++++ .+ +.|++||+..... .....+.. .+.+++++++ .+++++.||.|++||+.+
T Consensus 127 ~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 127 GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 6777665 55 8999999976642 23334444 8999999988 899999999999999987
Q ss_pred CCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCC
Q 014003 301 NTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDN 376 (432)
Q Consensus 301 ~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg 376 (432)
.. +....+..|...|.+++|+ +++|++++.||.|++||+++++.+..+. +...+.++.++ ++++++++.++
T Consensus 207 ~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 207 NY----EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp TT----EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC
T ss_pred Cc----EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCC
Confidence 42 3577788899999999997 8899999999999999999999999988 77788888888 78999999988
Q ss_pred --------------cEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 377 --------------TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 377 --------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.+++||+.+.+.+..+..|...+..+++ +|+++ +|++++.||.|++|+++
T Consensus 282 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~----s~~~~-~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 282 AKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAI----SPQGT-SYASGGEDGFIRLHHFE 345 (369)
T ss_dssp -------------CEEEEEETTTCCEEEEEECCSSCEEEEEE----CTTSS-EEEEEETTSEEEEEEEC
T ss_pred CceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEE----CCCCC-EEEEEcCCCeEEEEECc
Confidence 8999999999999999889888877777 89999 99999999999999985
No 25
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.8e-35 Score=271.65 Aligned_cols=241 Identities=18% Similarity=0.314 Sum_probs=209.6
Q ss_pred eeeeecCCC--ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 014003 145 RTLERTTPK--NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH 222 (432)
Q Consensus 145 ~~~~~~~~~--~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~ 222 (432)
+.+..+... .+++++.+..+++|+.|+.|++||+.++ ..+..+.+|..+|.+++|+|++++|++|+.|++|++||++
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~ 85 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 445555544 5566777779999999999999999988 7788999999999999999999999999999999999999
Q ss_pred CCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCC
Q 014003 223 TGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIP 300 (432)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~ 300 (432)
+++.+..+ .+|...|.+++++|+ ++++|+.|++|++||+.+
T Consensus 86 ~~~~~~~~-------------------------------------~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~ 128 (304)
T 2ynn_A 86 TGEKVVDF-------------------------------------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128 (304)
T ss_dssp TCCEEEEE-------------------------------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG
T ss_pred CCcEEEEE-------------------------------------eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC
Confidence 98876554 578889999999988 899999999999999987
Q ss_pred CCCCccccceeeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEec-CCCCCcEEEEEc----CCEEEEE
Q 014003 301 NTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLN-GHTDAPMSLLCW----DQYLLSC 372 (432)
Q Consensus 301 ~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~-~~~~~v~~~~~~----~~~l~s~ 372 (432)
+. .....+.+|...|.+++|+ +..|++|+.|++|++||++++++...+. +|...+..+.+. +.+|+++
T Consensus 129 ~~----~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 204 (304)
T 2ynn_A 129 NW----ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (304)
T ss_dssp TT----EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEE
T ss_pred Cc----chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEE
Confidence 63 3456788999999999996 5799999999999999999888766664 455778777775 4799999
Q ss_pred eCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 373 SLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 373 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+.|++|++||+++++.+..+.+|...+..+++ +|++. +|++|+.||.|++||+++
T Consensus 205 s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~----~p~~~-~l~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF----HPTLP-IIISGSEDGTLKIWNSST 259 (304)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEE----CSSSS-EEEEEETTSCEEEEETTT
T ss_pred cCCCeEEEEeCCCCccceeeCCCCCCEEEEEE----CCCCC-EEEEEcCCCeEEEEECCC
Confidence 99999999999999999999999888777666 89998 999999999999999864
No 26
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=8e-35 Score=284.45 Aligned_cols=266 Identities=23% Similarity=0.363 Sum_probs=234.0
Q ss_pred CCceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEe
Q 014003 152 PKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN 231 (432)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~ 231 (432)
....|+.+.+..+++|+.||.|++||+.++ +.+..+.+|.+.|.+++| ++++|++|+.||+|++||+.+++.+..+.
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 210 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTL-ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI 210 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCC-eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc
Confidence 346788888889999999999999999887 678889999999999998 78999999999999999999999988887
Q ss_pred C-CCceeeEEECCCEEE-EEcCCeEEEEEccCCce----EeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCc
Q 014003 232 L-GAEVGSLICEGPWVF-VGMPNVVKAWHIESSAE----FSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNP 305 (432)
Q Consensus 232 ~-~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~----~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~ 305 (432)
. ...+.++..++..++ ++.|+.|++||+.++.. ....+|...|.++.++++.+++|+.||.|++||+.++.
T Consensus 211 ~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~--- 287 (435)
T 1p22_A 211 HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE--- 287 (435)
T ss_dssp CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC---
T ss_pred CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc---
Confidence 4 455677776666555 55899999999998764 35678999999999988899999999999999998864
Q ss_pred cccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCC
Q 014003 306 FQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 306 ~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~ 385 (432)
.+..+.+|...|.+++++++++++|+.||.|++||+++++++..+.+|...+.++.+++++|++|+.||.|++||+.+
T Consensus 288 --~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 288 --FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp --EEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHH
T ss_pred --EEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCC
Confidence 577888999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CC---------ceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 386 EG---------NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 386 ~~---------~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.. .+..+..|...+..+++ ++. .|++|+.||.|++||+.+
T Consensus 366 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~------~~~-~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 366 ALDPRAPAGTLCLRTLVEHSGRVFRLQF------DEF-QIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp HTSTTSCTTTTEEEEECCCSSCCCCEEE------CSS-CEEECCSSSEEEEEC---
T ss_pred CCCccccccchheeeccCCCCCeEEEEe------CCC-EEEEEeCCCEEEEEECCC
Confidence 65 66777788888877766 456 799999999999999853
No 27
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.7e-36 Score=277.54 Aligned_cols=246 Identities=21% Similarity=0.260 Sum_probs=198.3
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.+.||++.|++++|+|+|++||||+.||+|+||++.+..
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~----------------------------------------- 42 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET----------------------------------------- 42 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-----------------------------------------
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-----------------------------------------
Confidence 367899999999999999999999999999999643211
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecC--CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEEC
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL--RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICE 242 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~--~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~ 242 (432)
.+.+.++.+|.++|.+++|++ ++++|+||+.|++|++||+++++...
T Consensus 43 -----------------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~-------------- 91 (297)
T 2pm7_B 43 -----------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ-------------- 91 (297)
T ss_dssp -----------------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCC--------------
T ss_pred -----------------cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEE--------------
Confidence 023556889999999999976 38999999999999999998764211
Q ss_pred CCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC----EEEEEECCCcEEEEECCCCCCCccccceeeeccccC
Q 014003 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (432)
Q Consensus 243 ~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~ 318 (432)
...+..|...|.+++|+|+ ++++++.|+.|++||++.+.. .....+.+|...
T Consensus 92 ---------------------~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~---~~~~~~~~h~~~ 147 (297)
T 2pm7_B 92 ---------------------IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT---TSPIIIDAHAIG 147 (297)
T ss_dssp ---------------------CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC---BCCEEEECCSSC
T ss_pred ---------------------EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc---eeeeeeecccCc
Confidence 1123567889999999874 899999999999999987632 123567789999
Q ss_pred eEEEEEeC---------------CEEEEEeCCCeEEEEECCCCc----eEEEecCCCCCcEEEEEcC-----CEEEEEeC
Q 014003 319 VTCLAVGG---------------KRLYSGSMDNTIRVWDLDTLE----AVMTLNGHTDAPMSLLCWD-----QYLLSCSL 374 (432)
Q Consensus 319 v~~l~~~~---------------~~l~sgs~dg~I~vwd~~~~~----~~~~~~~~~~~v~~~~~~~-----~~l~s~s~ 374 (432)
|.+++|+. ++|++|+.|++|++||+++++ +..++.+|...|.+++|++ ++|++++.
T Consensus 148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~ 227 (297)
T 2pm7_B 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ 227 (297)
T ss_dssp EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC
Confidence 99999972 589999999999999998876 6778999999999999983 68999999
Q ss_pred CCcEEEEEcCCCCc--ee-EE--eeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 375 DNTIKVWIMTEEGN--LE-VA--YTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 375 dg~i~iwd~~~~~~--~~-~~--~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
|++|++||+++... .. .+ ..+...+ ..+.|+|+|+ +|++++.||.|++|+..
T Consensus 228 D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v----~~~~~s~~g~-~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 228 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVL----WRASWSLSGN-VLALSGGDNKVTLWKEN 284 (297)
T ss_dssp TSCEEEEEESSTTSCCEEEESSSSCCSSCE----EEEEECSSSC-CEEEEETTSCEEEEEEC
T ss_pred CCcEEEEEeCCCCCccceeeeecccCCCcE----EEEEECCCCC-EEEEEcCCCcEEEEEEC
Confidence 99999999987532 11 22 2233333 3444599999 89999999999999864
No 28
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.8e-35 Score=288.79 Aligned_cols=310 Identities=21% Similarity=0.299 Sum_probs=243.8
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccC-c
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG-N 163 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 163 (432)
.+.||.+.|.. .+.+++.++++|+.||+|++||+.++.. ...+..+.....|..+... .
T Consensus 116 ~l~~h~~~v~~-~~~~~~~~l~sgs~dg~i~vwd~~~~~~-------------------~~~~~~h~~~V~~l~~~~~~~ 175 (464)
T 3v7d_B 116 TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKF-------------------LLQLSGHDGGVWALKYAHGGI 175 (464)
T ss_dssp EEECCSSSCEE-EEEEETTEEEEEETTSCEEEEETTTTEE-------------------EEEECCCSSCEEEEEECSTTE
T ss_pred EEcCCCCCcEE-EEEECCCEEEEEcCCCcEEEEECCCCcE-------------------EEEEeCCCcCEEEEEEcCCCE
Confidence 67889998643 3455788999999999999998765432 1122234444555555533 8
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEec--CCCCEEEEEeCCCcEEEEeCCCCceeE-------------
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALP--LRSDKLYSGSRDGTVQLWDCHTGQSAS------------- 228 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~--~~~~~l~s~s~Dg~v~iWd~~~~~~~~------------- 228 (432)
+++|+.|+.|++||+.++ +.+..+.+|.+.|.+++|+ +++++|++|+.||+|++||+.+++...
T Consensus 176 l~s~s~dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 176 LVSGSTDRTVRVWDIKKG-CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp EEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred EEEEeCCCCEEEEECCCC-cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 999999999999999988 7888999999999999997 678999999999999999998876432
Q ss_pred ----------EEe-CCCceeeEEECCCEEEE-EcCCeEEEEEccCCceE-eecCCcCCEEEEEEcCC--EEEEEECCCcE
Q 014003 229 ----------VIN-LGAEVGSLICEGPWVFV-GMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQDGNI 293 (432)
Q Consensus 229 ----------~~~-~~~~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i 293 (432)
.+. +...+.++..++.++++ +.|+.|++||+.+++.. .+.+|...|.++.++++ .+++|+.||.|
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i 334 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 334 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred ccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence 222 33455666677776665 47999999999988755 56789999999999988 99999999999
Q ss_pred EEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcE--EEEEcCCEEEE
Q 014003 294 LVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPM--SLLCWDQYLLS 371 (432)
Q Consensus 294 ~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s 371 (432)
++||+.+++ .+..+.+|...|.+++++++++++++.||.|++||+++++...... +...+. ++...++++++
T Consensus 335 ~vwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 408 (464)
T 3v7d_B 335 RIWDLENGE-----LMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVS 408 (464)
T ss_dssp EEEETTTTE-----EEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEE
T ss_pred EEEECCCCc-----EEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEE
Confidence 999998864 5778889999999999999999999999999999999988777664 343444 44445889998
Q ss_pred EeCCCcEEEEEcCCCCceeE-EeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEe
Q 014003 372 CSLDNTIKVWIMTEEGNLEV-AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLY 428 (432)
Q Consensus 372 ~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iw 428 (432)
++ ||.|++||+++++.+.. ...+...+..+++ + ++.++++++.||.+.+|
T Consensus 409 ~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~----~--~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 409 GS-ENQFNIYNLRSGKLVHANILKDADQIWSVNF----K--GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEE----E--TTEEEEEEEETTEEEEE
T ss_pred ec-CCeEEEEECCCCcEEehhhccCCCcEEEEEe----c--CCEEEEEEEeCCeEEEE
Confidence 88 99999999999987765 3455555555554 4 55477888888876554
No 29
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.3e-36 Score=309.96 Aligned_cols=291 Identities=20% Similarity=0.282 Sum_probs=229.1
Q ss_pred CCCCCCCCCCCCCCCCCc-eecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCC--ceEEeecc
Q 014003 85 PVSNHKKSPPSYNCPKNN-VRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHWLS 161 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g-~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 161 (432)
.+.||++.|++++|++++ .+|+|||.||+|+||++....... ....+.+..|... .+++.+.+
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~--------------~~~~~~~~~h~~~v~~v~~s~~g 442 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY--------------GVAQRRLTGHSHFVEDVVLSSDG 442 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS--------------CEEEEEEECCSSCEEEEEECTTS
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc--------------ccccceecCCCCcEEEEEECCCC
Confidence 468999999999999765 789999999999999876543210 0111233334433 45666677
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~ 241 (432)
..+++|+.|+.|++||+.++ ..+..+.+|...|.+++|+|++++|+||+.|++|++||....... .+..
T Consensus 443 ~~l~sgs~Dg~v~vwd~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~-~~~~--------- 511 (694)
T 3dm0_A 443 QFALSGSWDGELRLWDLAAG-VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY-TISE--------- 511 (694)
T ss_dssp SEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-EECS---------
T ss_pred CEEEEEeCCCcEEEEECCCC-cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce-eecc---------
Confidence 79999999999999999988 778889999999999999999999999999999999998643221 1110
Q ss_pred CCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC----EEEEEECCCcEEEEECCCCCCCccccceeeecccc
Q 014003 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 242 ~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
...+|...|.++.++++ .+++++.|+.|++||+++.. ....+.+|..
T Consensus 512 ------------------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-----~~~~~~~h~~ 562 (694)
T 3dm0_A 512 ------------------------GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-----LRSTLAGHTG 562 (694)
T ss_dssp ------------------------STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC-----EEEEECCCSS
T ss_pred ------------------------CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc-----EEEEEcCCCC
Confidence 11467888999999986 69999999999999998764 4677889999
Q ss_pred CeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceeEEee
Q 014003 318 PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYT 394 (432)
Q Consensus 318 ~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 394 (432)
.|++++|+ +++|++|+.||.|++||+++++++..+.. ...+.+++++ +..+++++.|+.|++||+++...+..+..
T Consensus 563 ~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~ 641 (694)
T 3dm0_A 563 YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKV 641 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECC
T ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcc
Confidence 99999997 89999999999999999999999988874 4578889988 44555556677899999998877665543
Q ss_pred ccCC---------------cceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 395 HNED---------------HGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 395 ~~~~---------------~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+... ......++.|+|+|+ +|++|+.||.|+||++.
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~-~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 642 DLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS-TLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCC----------------CCCCEEEEEECTTSS-EEEEEETTSEEEEEEC-
T ss_pred ccccccccccccccccCCceeEEeeeEEEcCCCC-EEEEEcCCCeEEEEecc
Confidence 2111 001123455699999 99999999999999985
No 30
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.4e-34 Score=269.92 Aligned_cols=309 Identities=13% Similarity=0.177 Sum_probs=242.7
Q ss_pred CCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecC--CCceEEeeccCceee
Q 014003 89 HKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTT--PKNVCYHWLSGNCVK 166 (432)
Q Consensus 89 h~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 166 (432)
|.++|.+++|+|||++++.+..++.+.+|....... ......+. ...+++.+....+++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~h~~~v~~~~~~~~~~~l~~ 68 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHAR-------------------QINTLNHGEVVCAVTISNPTRHVYT 68 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEE-------------------EEEEECCSSCCCEEEECSSSSEEEE
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccc-------------------cceeccCCCceEEEEEecCCcEEEE
Confidence 456789999999999999998888887773222111 00111122 235566666778888
Q ss_pred CCCCCeEEEEeCCCCc--EEEEEEe--cccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc--eeEEEe-CCCceeeE
Q 014003 167 GDECRFWHSWFCGEGF--TMLAKLE--GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ--SASVIN-LGAEVGSL 239 (432)
Q Consensus 167 g~~d~~i~vw~~~~~~--~~~~~l~--~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~--~~~~~~-~~~~~~~~ 239 (432)
++ |+.|++|++.++. ..+..+. +|...|.+++|+|++++|++++.||+|++||+++++ ....+. +...+.++
T Consensus 69 ~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~ 147 (337)
T 1gxr_A 69 GG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147 (337)
T ss_dssp EC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEE
T ss_pred cC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEE
Confidence 88 9999999997542 2233333 899999999999999999999999999999999887 344444 33445555
Q ss_pred E--ECCCEEEE-EcCCeEEEEEccCCceE-eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeee
Q 014003 240 I--CEGPWVFV-GMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLK 313 (432)
Q Consensus 240 ~--~~~~~l~~-~~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~ 313 (432)
. +++.++++ +.++.|++||+++++.. .+..|...+.++.++++ .+++++.||.|++||+++++ ....+
T Consensus 148 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----~~~~~- 221 (337)
T 1gxr_A 148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-----QLQQH- 221 (337)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEE-
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc-----eEeee-
Confidence 5 36666654 58899999999988755 56678999999999988 99999999999999998864 23333
Q ss_pred ccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCce
Q 014003 314 GHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNL 389 (432)
Q Consensus 314 ~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~ 389 (432)
.+...+.+++|+ ++++++++.|+.|++||+++++. ..+..|...+.++.++ +++|++++.||.|++||+.+++.+
T Consensus 222 ~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 477889999997 88999999999999999998876 4677899999999998 789999999999999999988776
Q ss_pred eEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 390 EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
. ...+...+..+.+ +|+++ +|++++.||.|++|++
T Consensus 301 ~-~~~~~~~v~~~~~----s~~~~-~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 301 F-QSKESSSVLSCDI----SVDDK-YIVTGSGDKKATVYEV 335 (337)
T ss_dssp E-EEECSSCEEEEEE----CTTSC-EEEEEETTSCEEEEEE
T ss_pred E-EecCCCcEEEEEE----CCCCC-EEEEecCCCeEEEEEE
Confidence 3 3446666655555 89999 8999999999999996
No 31
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.1e-34 Score=279.72 Aligned_cols=273 Identities=24% Similarity=0.385 Sum_probs=233.3
Q ss_pred eeeecCCC-ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 014003 146 TLERTTPK-NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG 224 (432)
Q Consensus 146 ~~~~~~~~-~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~ 224 (432)
.+..|... ..|+.+....+++|+.||.|++||+.++ +.+..+.+|.+.|++++|++++ +|++|+.||+|++||++++
T Consensus 116 ~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~-~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~ 193 (464)
T 3v7d_B 116 TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINK-KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG 193 (464)
T ss_dssp EEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT
T ss_pred EEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCC-cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC
Confidence 44445444 3578888889999999999999999888 7889999999999999999888 9999999999999999999
Q ss_pred ceeEEEe-CCCceeeEEE----CCCEE-EEEcCCeEEEEEccCCc------------------------eEeecCCcCCE
Q 014003 225 QSASVIN-LGAEVGSLIC----EGPWV-FVGMPNVVKAWHIESSA------------------------EFSLDGPVGEV 274 (432)
Q Consensus 225 ~~~~~~~-~~~~~~~~~~----~~~~l-~~~~~~~i~vwd~~~~~------------------------~~~~~~~~~~v 274 (432)
+.+..+. +...+.++.. ++.++ +++.|+.|++||+.+.. .....+|...+
T Consensus 194 ~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 273 (464)
T 3v7d_B 194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 273 (464)
T ss_dssp EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE
T ss_pred cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE
Confidence 9998887 4566666553 33444 45689999999998765 23567888999
Q ss_pred EEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEe
Q 014003 275 YSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTL 352 (432)
Q Consensus 275 ~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~ 352 (432)
.++..+++++++|+.||.|++||+.+++ .+..+.+|...|.+++|+ ++++++|+.||.|++||+++++++.++
T Consensus 274 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 274 RTVSGHGNIVVSGSYDNTLIVWDVAQMK-----CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCc-----EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 9999888899999999999999998753 577788999999999997 789999999999999999999999999
Q ss_pred cCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 353 NGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 353 ~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.+|...|.++.+++++|++++.||.|++||+.+....... .+.......++ +|+++ ++++|+ ||.|++||+++
T Consensus 349 ~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~----~~~~~-~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 349 QGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTF----YVSDN-ILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp CCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEE----EECSS-EEEEEE-TTEEEEEETTT
T ss_pred eCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEE----EeCCC-EEEEec-CCeEEEEECCC
Confidence 9999999999999999999999999999999987654443 34445555555 78888 888887 89999999874
No 32
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.3e-36 Score=284.52 Aligned_cols=293 Identities=14% Similarity=0.149 Sum_probs=225.0
Q ss_pred CCCCCCCCCCCCCCCC----ceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCC--ceEEee
Q 014003 86 VSNHKKSPPSYNCPKN----NVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHW 159 (432)
Q Consensus 86 ~~gh~~~v~~~~~s~~----g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 159 (432)
.+||.++|.+++|+|+ ...+++++.||.|+||++............ .. ..+... .+++.+
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~----~~----------~~~~~~v~~~~~~~ 79 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY----VD----------ADADENFYTCAWTY 79 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE----EC----------SCTTCCEEEEEEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec----cc----------cCCCCcEEEEEecc
Confidence 3589999999999983 334445555889999987644321000000 00 001122 344555
Q ss_pred c----cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC
Q 014003 160 L----SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGA 234 (432)
Q Consensus 160 ~----~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~ 234 (432)
. +..+++|+.|+.|++||+.++ +.+..+.+|...|.+++|+| ++++|++++.||+|++||+++++....+..
T Consensus 80 ~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-- 156 (366)
T 3k26_A 80 DSNTSHPLLAVAGSRGIIRIINPITM-QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG-- 156 (366)
T ss_dssp CTTTCCEEEEEEETTCEEEEECTTTC-CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS--
T ss_pred CCCCCCCEEEEecCCCEEEEEEchhc-eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc--
Confidence 5 337999999999999999887 67888999999999999999 999999999999999999998876655421
Q ss_pred ceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCc-------
Q 014003 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNP------- 305 (432)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~------- 305 (432)
...|...|.+++++++ ++++++.||.|++||++++....
T Consensus 157 --------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 204 (366)
T 3k26_A 157 --------------------------------VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 204 (366)
T ss_dssp --------------------------------TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHT
T ss_pred --------------------------------cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEE
Confidence 2467889999999987 99999999999999998753200
Q ss_pred ----------------cccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCce--------------EEEecCC
Q 014003 306 ----------------FQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEA--------------VMTLNGH 355 (432)
Q Consensus 306 ----------------~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~--------------~~~~~~~ 355 (432)
.........|...|.+++|+++++++++.||.|++||+++++. +..+..|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (366)
T 3k26_A 205 YNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS 284 (366)
T ss_dssp CCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS
T ss_pred ecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc
Confidence 0011223349999999999999999999999999999988754 8888899
Q ss_pred CCCcEEEEEc----CCEEEEEeCCCcEEEEEcCCCCcee----EEeec--cCCcceEEEeeeeCCCCCcEEEEEeCCCeE
Q 014003 356 TDAPMSLLCW----DQYLLSCSLDNTIKVWIMTEEGNLE----VAYTH--NEDHGVLALGGLNDPDGNPVLICSCNDDSV 425 (432)
Q Consensus 356 ~~~v~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~--~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I 425 (432)
...+.++.++ +++|++++.||.|++||+.+++... .+..| ...+..+++ +|+++ +|++++.||.|
T Consensus 285 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~----s~~~~-~l~s~~~dg~i 359 (366)
T 3k26_A 285 QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSF----SRDSS-ILIAVCDDASI 359 (366)
T ss_dssp SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEE----CTTSS-EEEEEETTSEE
T ss_pred CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEe----CCCCC-eEEEEeCCCEE
Confidence 9988888776 6899999999999999999876543 44455 455555555 89999 99999999999
Q ss_pred EEeeCCC
Q 014003 426 HLYELPS 432 (432)
Q Consensus 426 ~iwdl~s 432 (432)
++||+.+
T Consensus 360 ~iwd~~~ 366 (366)
T 3k26_A 360 WRWDRLR 366 (366)
T ss_dssp EEEEC--
T ss_pred EEEEecC
Confidence 9999864
No 33
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.1e-35 Score=290.51 Aligned_cols=241 Identities=16% Similarity=0.198 Sum_probs=185.8
Q ss_pred EEEEecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC---ceeeE--EECCCEEEEE-cCCeEEEE
Q 014003 185 LAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGA---EVGSL--ICEGPWVFVG-MPNVVKAW 257 (432)
Q Consensus 185 ~~~l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~---~~~~~--~~~~~~l~~~-~~~~i~vw 257 (432)
...+.+|.+.|++|+|+| ++++|+||+.||+|++||++++.......... .+.++ .+++.+++++ .++.|++|
T Consensus 157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w 236 (435)
T 4e54_B 157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL 236 (435)
T ss_dssp EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence 445679999999999998 68999999999999999998765444433322 22333 3577777765 78999999
Q ss_pred EccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEE
Q 014003 258 HIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSG 332 (432)
Q Consensus 258 d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sg 332 (432)
|++......+.+|...|.+++|+|+ ++++|+.|+.|++||++..... .......+|...|++++|+ +++|+++
T Consensus 237 d~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~spdg~~l~s~ 314 (435)
T 4e54_B 237 NMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK--ASFLYSLPHRHPVNAACFSPDGARLLTT 314 (435)
T ss_dssp ESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS--SCCSBCCBCSSCEEECCBCTTSSEEEEE
T ss_pred ccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccccc--ceEEEeeeccccccceeECCCCCeeEEE
Confidence 9988877788899999999999976 7889999999999999886542 2233456799999999997 8999999
Q ss_pred eCCCeEEEEECCCCceEEEecCCCCC------cEEEEEc--CCEEEEEe------------CCCcEEEEEcCCCCceeEE
Q 014003 333 SMDNTIRVWDLDTLEAVMTLNGHTDA------PMSLLCW--DQYLLSCS------------LDNTIKVWIMTEEGNLEVA 392 (432)
Q Consensus 333 s~dg~I~vwd~~~~~~~~~~~~~~~~------v~~~~~~--~~~l~s~s------------~dg~i~iwd~~~~~~~~~~ 392 (432)
+.||.|+|||++++++...+..|... +....+. +.++++++ .++.|++||..+++.+..+
T Consensus 315 ~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l 394 (435)
T 4e54_B 315 DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL 394 (435)
T ss_dssp ESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred cCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence 99999999999999998888766532 2233333 44555553 3457999999999887776
Q ss_pred e-eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 393 Y-THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 393 ~-~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
. .|...+..+. .|+|+|+ +|++|+ |+.|+||++++
T Consensus 395 ~~~~~~~v~s~~---~fspdg~-~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 395 YDPESSGISSLN---EFNPMGD-TLASAM-GYHILIWSQQE 430 (435)
T ss_dssp CCSSCCCCCCEE---EECTTSS-CEEEEC-SSEEEECCCC-
T ss_pred eCCCCCcEEEEE---EECCCCC-EEEEEc-CCcEEEEECCc
Confidence 5 3555555442 2489999 777775 88999999874
No 34
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=9.4e-35 Score=281.79 Aligned_cols=238 Identities=23% Similarity=0.326 Sum_probs=211.1
Q ss_pred eeecCCC--ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 014003 147 LERTTPK--NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG 224 (432)
Q Consensus 147 ~~~~~~~--~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~ 224 (432)
+..|... .+++++....+++|+.|+.|++||+.++ +....+.+|.+.|.+++|+|++++|++|+.|++|++||+.++
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~-~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~ 182 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC-CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 3444444 4556666779999999999999999887 667889999999999999999999999999999999999887
Q ss_pred ceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCC
Q 014003 225 QSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNT 302 (432)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~ 302 (432)
+++..+ .+|...|.+++++|+ ++++|+.|++|++||+.++.
T Consensus 183 ~~~~~~-------------------------------------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~ 225 (410)
T 1vyh_C 183 ECIRTM-------------------------------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225 (410)
T ss_dssp CEEECC-------------------------------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred ceeEEE-------------------------------------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 765433 578889999999987 89999999999999998874
Q ss_pred CCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc---------------
Q 014003 303 QNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--------------- 365 (432)
Q Consensus 303 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--------------- 365 (432)
.+..+.+|...|.++.++ +.++++|+.|+.|++||++++++...+.+|...|.++.+.
T Consensus 226 -----~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 300 (410)
T 1vyh_C 226 -----CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300 (410)
T ss_dssp -----EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred -----EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence 467788999999999997 8899999999999999999999999999999999999986
Q ss_pred -------CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 366 -------DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 366 -------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+.+|++|+.|+.|++||++++..+..+.+|...+..+.+ +|+|+ +|++|+.||.|++||+++
T Consensus 301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~----~~~g~-~l~s~s~D~~i~vwd~~~ 369 (410)
T 1vyh_C 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF----HSGGK-FILSCADDKTLRVWDYKN 369 (410)
T ss_dssp -------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE----CSSSS-CEEEEETTTEEEEECCTT
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEE----cCCCC-EEEEEeCCCeEEEEECCC
Confidence 348999999999999999999999888889888777766 89998 899999999999999863
No 35
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9.4e-35 Score=276.89 Aligned_cols=282 Identities=13% Similarity=0.101 Sum_probs=223.3
Q ss_pred CCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceee
Q 014003 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVK 166 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (432)
..|.++|.+++|+|+|++||+|+.||.|+||++.+..
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~------------------------------------------- 41 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------------------------------------------- 41 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-------------------------------------------
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-------------------------------------------
Confidence 3478888999999999888888888887777532210
Q ss_pred CCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEe---CCCceeeEEE--
Q 014003 167 GDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN---LGAEVGSLIC-- 241 (432)
Q Consensus 167 g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~---~~~~~~~~~~-- 241 (432)
.+.+..+.+|...|.+++|+|++++|++++.||+|++||+++++...... +...+.++..
T Consensus 42 ---------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 106 (372)
T 1k8k_C 42 ---------------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP 106 (372)
T ss_dssp ---------------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT
T ss_pred ---------------EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC
Confidence 13677788999999999999999999999999999999999887665544 4455666653
Q ss_pred CCCEEEE-EcCCeEEEEEccCCce----E-eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCC----------
Q 014003 242 EGPWVFV-GMPNVVKAWHIESSAE----F-SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQ---------- 303 (432)
Q Consensus 242 ~~~~l~~-~~~~~i~vwd~~~~~~----~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~---------- 303 (432)
++.++++ +.++.|++||++.... . ....|...|.++.++++ ++++++.||.|++||++....
T Consensus 107 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 186 (372)
T 1k8k_C 107 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 186 (372)
T ss_dssp TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB
T ss_pred CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccc
Confidence 5666665 5789999999998762 2 33567899999999988 899999999999999753210
Q ss_pred ---CccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCC
Q 014003 304 ---NPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDN 376 (432)
Q Consensus 304 ---~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg 376 (432)
...+....+..|...|.+++|+ +++|++++.||.|++||+++++++..+..|...+.++.++ +.+|+++ .|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~ 265 (372)
T 1k8k_C 187 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDC 265 (372)
T ss_dssp SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTS
T ss_pred cccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCC
Confidence 0124566777899999999996 8899999999999999999999999999999999999998 4555555 999
Q ss_pred cEEEEEcCC--CC--------------------------------ce------eEE-eeccCCcceEEEeeeeCCCC---
Q 014003 377 TIKVWIMTE--EG--------------------------------NL------EVA-YTHNEDHGVLALGGLNDPDG--- 412 (432)
Q Consensus 377 ~i~iwd~~~--~~--------------------------------~~------~~~-~~~~~~~~~~~~~~~~sp~g--- 412 (432)
.|++|++.+ ++ .. ..+ ..|...+..+++. +++|
T Consensus 266 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~g~~~ 342 (372)
T 1k8k_C 266 FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVL---SGGKAKC 342 (372)
T ss_dssp SCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEE---ESTTTSC
T ss_pred eEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEe---cCCCcce
Confidence 999999987 31 00 122 2567766666652 4666
Q ss_pred CcEEEEEeCCCeEEEeeCC
Q 014003 413 NPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 413 ~~~l~sg~~Dg~I~iwdl~ 431 (432)
. +|++|+.||.|++||++
T Consensus 343 ~-~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 343 S-QFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp S-EEEEEETTSEEEEEEHH
T ss_pred e-eEEEecCCCceEEEEec
Confidence 6 99999999999999974
No 36
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.5e-33 Score=274.56 Aligned_cols=273 Identities=26% Similarity=0.434 Sum_probs=237.7
Q ss_pred eeeeecCCC-ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 014003 145 RTLERTTPK-NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT 223 (432)
Q Consensus 145 ~~~~~~~~~-~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~ 223 (432)
..+..|... ..|+.+.+..+++|+.||.|++||+.++ +.+..+.+|.+.|.+++|+ +++|++|+.||+|++||+.+
T Consensus 112 ~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~ 188 (445)
T 2ovr_B 112 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG-KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET 188 (445)
T ss_dssp EEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTC-CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT
T ss_pred EEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCC-cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc
Confidence 445555544 4688888899999999999999999888 6788999999999999997 67999999999999999999
Q ss_pred CceeEEEe-CCCceeeEEECCCEEE-EEcCCeEEEEEccCCceE-eecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCC
Q 014003 224 GQSASVIN-LGAEVGSLICEGPWVF-VGMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIP 300 (432)
Q Consensus 224 ~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~ 300 (432)
++.+..+. +...+.++..++..++ ++.|+.|++||+.+++.. .+.+|...+.++.++++.+++|+.||.|++||+.+
T Consensus 189 ~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~ 268 (445)
T 2ovr_B 189 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET 268 (445)
T ss_dssp TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG
T ss_pred CcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCC
Confidence 99988887 4456777776666555 558999999999988755 56789999999999888999999999999999987
Q ss_pred CCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeCCCcEEE
Q 014003 301 NTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKV 380 (432)
Q Consensus 301 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~i 380 (432)
+. .+..+.+|...|.+++++++++++++.||.|++||+++++++..+.+|...+.++.+.++++++++.||.|++
T Consensus 269 ~~-----~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~v 343 (445)
T 2ovr_B 269 ET-----CLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 343 (445)
T ss_dssp TE-----EEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEE
T ss_pred Cc-----EeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEE
Confidence 64 5777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCceeEEee---ccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 381 WIMTEEGNLEVAYT---HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 381 wd~~~~~~~~~~~~---~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
||+++++.+..+.. |...+..+++ + ++ +|++|+.||.|++||+++
T Consensus 344 wd~~~~~~~~~~~~~~~~~~~v~~~~~----~--~~-~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 344 WDIKTGQCLQTLQGPNKHQSAVTCLQF----N--KN-FVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp EETTTCCEEEEECSTTSCSSCEEEEEE----C--SS-EEEEEETTSEEEEEETTT
T ss_pred EECCCCcEEEEEccCCCCCCCEEEEEE----C--CC-EEEEEeCCCeEEEEECCC
Confidence 99999988887776 5555544444 3 45 899999999999999864
No 37
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.2e-35 Score=296.28 Aligned_cols=317 Identities=12% Similarity=0.166 Sum_probs=244.0
Q ss_pred CCCCCCCCCCCCCCCCCce-ecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCC-----CceEEe
Q 014003 85 PVSNHKKSPPSYNCPKNNV-RVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP-----KNVCYH 158 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~-~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 158 (432)
.+.+|.+.|.+++|+|++. .+++++.||++++|+....... ..+..+.. ..+++.
T Consensus 155 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~-------------------~~~~~~~~~~~~v~~~~~~ 215 (615)
T 1pgu_A 155 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS-------------------ASDRTHHKQGSFVRDVEFS 215 (615)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE-------------------EEECSSSCTTCCEEEEEEC
T ss_pred eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCccee-------------------eeecccCCCCceEEEEEEC
Confidence 5678999999999999998 7999999999999986543321 11111111 245566
Q ss_pred ec-cCceeeCCCCCeEEEEeCCCCcEEEEEE-e---cccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC
Q 014003 159 WL-SGNCVKGDECRFWHSWFCGEGFTMLAKL-E---GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (432)
Q Consensus 159 ~~-~~~~~~g~~d~~i~vw~~~~~~~~~~~l-~---~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~ 233 (432)
+. ...+++++.|+.|++||+.++ +.+..+ . +|...|.+++|+ ++++|++++.|++|++||+.+++.+..+...
T Consensus 216 ~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 216 PDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp STTCCEEEEEETTCCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCC-CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 66 668999999999999999887 667777 6 899999999999 9999999999999999999999988888765
Q ss_pred -----CceeeEE-ECCCEEE-EEcCCeEEEEEccCCceE-eecC------------------------------------
Q 014003 234 -----AEVGSLI-CEGPWVF-VGMPNVVKAWHIESSAEF-SLDG------------------------------------ 269 (432)
Q Consensus 234 -----~~~~~~~-~~~~~l~-~~~~~~i~vwd~~~~~~~-~~~~------------------------------------ 269 (432)
..+..+. +++..++ ++.++.|++||+.+++.. .+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 373 (615)
T 1pgu_A 294 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSN 373 (615)
T ss_dssp TTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCS
T ss_pred CCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccC
Confidence 2222222 2444443 446777777776643321 1111
Q ss_pred -----------------------------------------------------------------------CcCCEEEEE
Q 014003 270 -----------------------------------------------------------------------PVGEVYSMV 278 (432)
Q Consensus 270 -----------------------------------------------------------------------~~~~v~~l~ 278 (432)
+...+.+++
T Consensus 374 ~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (615)
T 1pgu_A 374 LIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVS 453 (615)
T ss_dssp CEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred ceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEE
Confidence 223344444
Q ss_pred EcCCEEEEEEC-CCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecC-
Q 014003 279 VANEMLFAGAQ-DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNG- 354 (432)
Q Consensus 279 ~~~~~l~~g~~-dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~- 354 (432)
++++++++++. |+.|++||+..+.. .. ..+..|...|++++|+ +++|++++.||.|++||+++++++..+.+
T Consensus 454 ~~~~~l~~~~~~d~~i~~~~~~~~~~---~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 529 (615)
T 1pgu_A 454 LSQNYVAVGLEEGNTIQVFKLSDLEV---SF-DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF 529 (615)
T ss_dssp ECSSEEEEEETTTSCEEEEETTEEEE---EE-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC
T ss_pred EcCCEEEEeecCCCeEEEEECCCccc---cc-cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecC
Confidence 44345666666 77777777665421 11 5667899999999996 89999999999999999999999999988
Q ss_pred CCCCcEEEEE------------cCCEEEEEeCCCcEEEEEcCCC-CceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeC
Q 014003 355 HTDAPMSLLC------------WDQYLLSCSLDNTIKVWIMTEE-GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCN 421 (432)
Q Consensus 355 ~~~~v~~~~~------------~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~ 421 (432)
|...|.++++ .+++|++++.||.|++||+.+. +.+..+..|...+..++| +|+++ |++++.
T Consensus 530 h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~----s~~~~--l~s~~~ 603 (615)
T 1pgu_A 530 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW----ETPST--LVSSGA 603 (615)
T ss_dssp CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEE----EETTE--EEEEET
T ss_pred CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEE----cCCCC--eEEecC
Confidence 9999999999 5579999999999999999988 677777788888877777 79988 888999
Q ss_pred CCeEEEeeCCC
Q 014003 422 DDSVHLYELPS 432 (432)
Q Consensus 422 Dg~I~iwdl~s 432 (432)
||.|++|++++
T Consensus 604 d~~v~iw~~~~ 614 (615)
T 1pgu_A 604 DACIKRWNVVL 614 (615)
T ss_dssp TSCEEEEEEC-
T ss_pred CceEEEEeeec
Confidence 99999999864
No 38
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.6e-36 Score=280.12 Aligned_cols=247 Identities=21% Similarity=0.282 Sum_probs=195.2
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.+.||++.|++++|+|+|++||||+.||+|+|||+..+.
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~----------------------------------------- 46 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG----------------------------------------- 46 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-----------------------------------------
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-----------------------------------------
Confidence 567899999999999999999999999999999643211
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecC--CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEEC
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL--RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICE 242 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~--~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~ 242 (432)
...+..+.+|.+.|.+++|++ ++++|+||+.|++|++||+++++....
T Consensus 47 -----------------~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~------------- 96 (316)
T 3bg1_A 47 -----------------QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKS------------- 96 (316)
T ss_dssp -----------------EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEE-------------
T ss_pred -----------------cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEE-------------
Confidence 034567889999999999976 489999999999999999987642211
Q ss_pred CCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC----EEEEEECCCcEEEEECCCCCCCccccceeeeccccC
Q 014003 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (432)
Q Consensus 243 ~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~ 318 (432)
..+.+|...|.+++|+|+ ++++|+.|+.|++||+..+.. ......+.+|...
T Consensus 97 ----------------------~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~--~~~~~~~~~h~~~ 152 (316)
T 3bg1_A 97 ----------------------HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ--WEVKKINNAHTIG 152 (316)
T ss_dssp ----------------------EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC--EEECCBTTSSSSC
T ss_pred ----------------------EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC--cceeeeeccccCC
Confidence 123578889999999875 899999999999999987532 2234556789999
Q ss_pred eEEEEEeC-------------------CEEEEEeCCCeEEEEECCCC---ceEEEecCCCCCcEEEEEcC------CEEE
Q 014003 319 VTCLAVGG-------------------KRLYSGSMDNTIRVWDLDTL---EAVMTLNGHTDAPMSLLCWD------QYLL 370 (432)
Q Consensus 319 v~~l~~~~-------------------~~l~sgs~dg~I~vwd~~~~---~~~~~~~~~~~~v~~~~~~~------~~l~ 370 (432)
|.+++|+. ++|++|+.|+.|++||++.. +++..+.+|...|.+++|++ ++|+
T Consensus 153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~la 232 (316)
T 3bg1_A 153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA 232 (316)
T ss_dssp BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEE
T ss_pred cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEE
Confidence 99998862 58999999999999999765 56788999999999999983 6899
Q ss_pred EEeCCCcEEEEEcCCCC----ceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 371 SCSLDNTIKVWIMTEEG----NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 371 s~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+++.|++|++||+.+.. ....+..|...+..++| +|+|+ +|++++.||.|++|+..
T Consensus 233 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~----sp~g~-~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 233 SCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW----SITAN-ILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEE----CTTTC-CEEEEESSSCEEEEEEC
T ss_pred EEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEE----cCCCC-EEEEEcCCCeEEEEEEC
Confidence 99999999999998632 22344556665555555 89998 89999999999999964
No 39
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.4e-34 Score=291.29 Aligned_cols=338 Identities=12% Similarity=0.136 Sum_probs=255.2
Q ss_pred CCCCCCCCC-CCCCCCCC--CceecCCCCCCCcccccccCCC--------CCC------CCCCcccccCCCC--------
Q 014003 84 LPVSNHKKS-PPSYNCPK--NNVRVSSGSEEGTTHVQNRENP--------DRT------VPNKSSLDCSTGS-------- 138 (432)
Q Consensus 84 ~~~~gh~~~-v~~~~~s~--~g~~las~~~Dg~i~iW~~~~~--------~~~------~~~~~~~~~~~~~-------- 138 (432)
..+.+|.+. |.+++|+| +|++||+|+.||+|+||++..+ ... ......+..+...
T Consensus 57 ~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 136 (615)
T 1pgu_A 57 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 136 (615)
T ss_dssp EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred eEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEecc
Confidence 366889999 99999999 9999999999999999998633 100 0000011111100
Q ss_pred C-----------CCCCceeeeecCCCceE--EeeccC-ceeeCCCCCeEEEEeCCCCcEEEEEEecccC---cEEEEEec
Q 014003 139 D-----------DSGSKRTLERTTPKNVC--YHWLSG-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKK---AVSGIALP 201 (432)
Q Consensus 139 ~-----------~~~~~~~~~~~~~~~~~--~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~---~V~~l~~~ 201 (432)
+ .......+..+.....+ +.+... .+++++.|+.|++||+.+. +.+..+.+|.. .|.+++|+
T Consensus 137 ~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~ 215 (615)
T 1pgu_A 137 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-KFSASDRTHHKQGSFVRDVEFS 215 (615)
T ss_dssp CSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-EEEEEECSSSCTTCCEEEEEEC
T ss_pred CCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-ceeeeecccCCCCceEEEEEEC
Confidence 0 00111222223333334 444444 6999999999999999887 78889999999 99999999
Q ss_pred CC-CCEEEEEeCCCcEEEEeCCCCceeEEE-----eCCCceeeEEE-CCCEEEE-EcCCeEEEEEccCCceEe-ecCC--
Q 014003 202 LR-SDKLYSGSRDGTVQLWDCHTGQSASVI-----NLGAEVGSLIC-EGPWVFV-GMPNVVKAWHIESSAEFS-LDGP-- 270 (432)
Q Consensus 202 ~~-~~~l~s~s~Dg~v~iWd~~~~~~~~~~-----~~~~~~~~~~~-~~~~l~~-~~~~~i~vwd~~~~~~~~-~~~~-- 270 (432)
|+ +++|++++.||.|++||+.+++.+..+ .+...+.++.. ++.++++ +.|+.|++||+++++... +..+
T Consensus 216 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 295 (615)
T 1pgu_A 216 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 295 (615)
T ss_dssp STTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC
Confidence 99 999999999999999999999999988 55667776665 6666665 478999999999887653 3333
Q ss_pred --cCCEEEEEEcC-CEEEEEECCCcEEEEECCCCCCCccccceeee----------------------------------
Q 014003 271 --VGEVYSMVVAN-EMLFAGAQDGNILVWKGIPNTQNPFQLAALLK---------------------------------- 313 (432)
Q Consensus 271 --~~~v~~l~~~~-~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~---------------------------------- 313 (432)
...+.++.+.. +.+++++.||.|++||+.++.. ...+.
T Consensus 296 ~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~-----~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~ 370 (615)
T 1pgu_A 296 QLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV-----LKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQD 370 (615)
T ss_dssp CGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEE-----EEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECC
T ss_pred cccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcE-----EEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCc
Confidence 35677776643 3888888888888888764221 11111
Q ss_pred -------------------------------------------------------------------------ccccCeE
Q 014003 314 -------------------------------------------------------------------------GHTRPVT 320 (432)
Q Consensus 314 -------------------------------------------------------------------------~h~~~v~ 320 (432)
.|...+.
T Consensus 371 ~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (615)
T 1pgu_A 371 HSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 450 (615)
T ss_dssp CCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred ccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce
Confidence 1344566
Q ss_pred EEEEeCCEEEEEeC-CCeEEEEECCCCceE-EEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEee-c
Q 014003 321 CLAVGGKRLYSGSM-DNTIRVWDLDTLEAV-MTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYT-H 395 (432)
Q Consensus 321 ~l~~~~~~l~sgs~-dg~I~vwd~~~~~~~-~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~ 395 (432)
+++++++++++++. ||.|++||+.+++.. ..+.+|...+.+++++ +++|++++.||.|++||+.+.+.+..+.. |
T Consensus 451 ~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h 530 (615)
T 1pgu_A 451 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR 530 (615)
T ss_dssp EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC
T ss_pred EEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCC
Confidence 66666788888888 999999999887766 7778899999999997 78999999999999999999988877776 8
Q ss_pred cCCcceEEEeeeeCC----------CCCcEEEEEeCCCeEEEeeCCC
Q 014003 396 NEDHGVLALGGLNDP----------DGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 396 ~~~~~~~~~~~~~sp----------~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
...+..+++ +| +++ +|++++.||.|++||+++
T Consensus 531 ~~~v~~~~~----sp~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~ 572 (615)
T 1pgu_A 531 TSKINAISW----KPAEKGANEEEIEED-LVATGSLDTNIFIYSVKR 572 (615)
T ss_dssp SSCEEEEEE----CCCC------CCSCC-EEEEEETTSCEEEEESSC
T ss_pred CCceeEEEE----cCccccccccccCCC-EEEEEcCCCcEEEEECCC
Confidence 887777776 89 888 999999999999999864
No 40
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.6e-34 Score=277.13 Aligned_cols=279 Identities=14% Similarity=0.155 Sum_probs=218.2
Q ss_pred CCCCCCCCCCCCCCCCCc-eecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCc
Q 014003 85 PVSNHKKSPPSYNCPKNN-VRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g-~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (432)
.+.+|.+.|.+++|+|+| ++||+|+.||+|+||++.+...
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------------------------------- 108 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK--------------------------------------- 108 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC---------------------------------------
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc---------------------------------------
Confidence 568999999999999999 9999999999999996543221
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeEEEeC-C---Cceee
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINL-G---AEVGS 238 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~---~~~~~ 238 (432)
.....+.+|...|.+++|+| ++++|++++.|++|++||+++ .....+.. . ..+.+
T Consensus 109 -------------------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~ 168 (383)
T 3ei3_B 109 -------------------TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCC 168 (383)
T ss_dssp -------------------EEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEE
T ss_pred -------------------ceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEE
Confidence 22223357999999999999 789999999999999999996 44444443 2 33555
Q ss_pred EE--ECCCEEEE-EcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceee
Q 014003 239 LI--CEGPWVFV-GMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (432)
Q Consensus 239 ~~--~~~~~l~~-~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~ 312 (432)
+. +++.++++ +.++.|++||++......+..|...|.+++|+++ ++++++.|+.|++||+++.... ......+
T Consensus 169 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~ 247 (383)
T 3ei3_B 169 VDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-NSYIAEM 247 (383)
T ss_dssp EEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-TCEEEEE
T ss_pred EEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-cceEEEe
Confidence 44 46666665 5889999999976667788899999999999988 7999999999999999985421 1233434
Q ss_pred eccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCC-------CC----------cEEEEEc--CCEEE
Q 014003 313 KGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT-------DA----------PMSLLCW--DQYLL 370 (432)
Q Consensus 313 ~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~-------~~----------v~~~~~~--~~~l~ 370 (432)
+|...|.+++|+ +++|++++.|+.|++||+++++.+..+.+|. .. +..+.++ +++
T Consensus 248 -~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-- 324 (383)
T 3ei3_B 248 -PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-- 324 (383)
T ss_dssp -ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--
T ss_pred -cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--
Confidence 699999999996 6899999999999999999988877776553 22 2223333 333
Q ss_pred EEeCCCcEEEEEcCCCCceeEEeec--cCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 371 SCSLDNTIKVWIMTEEGNLEVAYTH--NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 371 s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+++.|+.|++||+.+++.+..+..+ ...+..+++ +|+++ +|++|+ ||.|++||+++
T Consensus 325 s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~----s~~g~-~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 325 LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKF----SPTGD-VLASGM-GFNILIWNRED 382 (383)
T ss_dssp CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEE----CTTSS-EEEEEE-TTEEEEEECC-
T ss_pred ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEE----ecCcc-EEEEec-CCcEEEEecCC
Confidence 6678999999999999988888763 344444455 89999 888887 99999999874
No 41
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=7.7e-33 Score=269.17 Aligned_cols=270 Identities=21% Similarity=0.330 Sum_probs=226.0
Q ss_pred ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEE--EEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEe
Q 014003 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLA--KLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN 231 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~--~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~ 231 (432)
..++.|....+++.+.|++|++||..++ +... .+.+|...|++|+|+|+|++|++|+.||+|++||+++++.+..+.
T Consensus 108 ~~~l~wS~~n~lAvgld~tV~lWd~~tg-~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~ 186 (420)
T 4gga_A 108 LNLVDWSSGNVLAVALDNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 186 (420)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ceeEEECCCCEEEEEeCCEEEEEECCCC-CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe
Confidence 3467777776666667999999999987 4444 445788899999999999999999999999999999999998887
Q ss_pred C-CCceeeEEECCCEEEEE-cCCeEEEEEccCCce--EeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCc
Q 014003 232 L-GAEVGSLICEGPWVFVG-MPNVVKAWHIESSAE--FSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNP 305 (432)
Q Consensus 232 ~-~~~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~--~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~ 305 (432)
. ...+.++..++.+++++ .++.+++||...... ..+.+|...+..+.+.++ .+++++.|+.+++||...+...
T Consensus 187 ~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~- 265 (420)
T 4gga_A 187 SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG- 265 (420)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC-
T ss_pred CCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc-
Confidence 4 45667777888877765 899999999887553 467899999999999988 9999999999999999877542
Q ss_pred cccceeeeccccCeEEEEEe---CCEEEEE--eCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEe--CCC
Q 014003 306 FQLAALLKGHTRPVTCLAVG---GKRLYSG--SMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCS--LDN 376 (432)
Q Consensus 306 ~~~~~~~~~h~~~v~~l~~~---~~~l~sg--s~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s--~dg 376 (432)
.........|...|.+++|+ ...++++ +.|++|++||+++++++..+..|. .+.++.+. ++.+++++ .|+
T Consensus 266 ~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~~~~lv~~sg~~d~ 344 (420)
T 4gga_A 266 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQN 344 (420)
T ss_dssp SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS-CEEEEEEETTTTEEEEEECTTTC
T ss_pred ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc-ceeeeeecCCCCeEEEEEecCCC
Confidence 23456677899999999996 5666654 579999999999999999998654 56677766 67777665 799
Q ss_pred cEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 377 TIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 377 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.|+|||+.+.+.+..+.+|...+..+++ +|+|+ +|++|+.||+|+|||+.
T Consensus 345 ~I~iwd~~~~~~v~~l~gH~~~V~~l~~----spdg~-~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 345 QLVIWKYPTMAKVAELKGHTSRVLSLTM----SPDGA-TVASAAADETLRLWRCF 394 (420)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEE----CTTSS-CEEEEETTTEEEEECCS
T ss_pred EEEEEECCCCcEEEEEcCCCCCEEEEEE----cCCCC-EEEEEecCCeEEEEECC
Confidence 9999999999999999999988877777 89999 89999999999999974
No 42
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.5e-34 Score=265.55 Aligned_cols=237 Identities=22% Similarity=0.300 Sum_probs=206.5
Q ss_pred ecCCCceEEeec------cCceeeCCCCCeEEEEeCCCCc-EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 014003 149 RTTPKNVCYHWL------SGNCVKGDECRFWHSWFCGEGF-TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDC 221 (432)
Q Consensus 149 ~~~~~~~~~~~~------~~~~~~g~~d~~i~vw~~~~~~-~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~ 221 (432)
.|.....|..|. ...+++|+.|+.|++|++.++. .....+.+|...|.+++|++++.++++++.|++|++||+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~ 109 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL 109 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 344555566553 3479999999999999997652 345578999999999999999999999999999999999
Q ss_pred CCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECC
Q 014003 222 HTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGI 299 (432)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~ 299 (432)
++++.+..+. .+...+.+++++|+ ++++|+.||.|++||+.
T Consensus 110 ~~~~~~~~~~-------------------------------------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~ 152 (321)
T 3ow8_A 110 ENGKQIKSID-------------------------------------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE 152 (321)
T ss_dssp TTTEEEEEEE-------------------------------------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETT
T ss_pred CCCCEEEEEe-------------------------------------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC
Confidence 9988776553 44556778889888 99999999999999998
Q ss_pred CCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCC
Q 014003 300 PNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLD 375 (432)
Q Consensus 300 ~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d 375 (432)
++. ....+..|...|.+++|+ +++|++|+.||.|++||+++++++.++.+|...|.+++++ +++|++++.|
T Consensus 153 ~~~-----~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~d 227 (321)
T 3ow8_A 153 SGK-----KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD 227 (321)
T ss_dssp TCS-----EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTT
T ss_pred CCc-----eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCC
Confidence 875 356677888999999997 8999999999999999999999999999999999999998 6899999999
Q ss_pred CcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 376 NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 376 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+.|++||+++.+....+..|...+..+++ +|+++ +|++++.||.|++||+++
T Consensus 228 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~----sp~~~-~l~s~s~D~~v~iwd~~~ 279 (321)
T 3ow8_A 228 GYIKIYDVQHANLAGTLSGHASWVLNVAF----CPDDT-HFVSSSSDKSVKVWDVGT 279 (321)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEE----CTTSS-EEEEEETTSCEEEEETTT
T ss_pred CeEEEEECCCcceeEEEcCCCCceEEEEE----CCCCC-EEEEEeCCCcEEEEeCCC
Confidence 99999999999888888888888777776 89999 899999999999999864
No 43
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.2e-34 Score=283.29 Aligned_cols=276 Identities=21% Similarity=0.370 Sum_probs=230.1
Q ss_pred CCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCcee
Q 014003 86 VSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCV 165 (432)
Q Consensus 86 ~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (432)
..+|...|.++++ +|.++++|+.||+|++||+.++.. ...+..+.....|+.+....++
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~-------------------~~~~~~h~~~v~~l~~~~~~l~ 187 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC-------------------KRILTGHTGSVLCLQYDERVII 187 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE-------------------EEEECCCSSCEEEEECCSSEEE
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE-------------------EEEEcCCCCcEEEEEECCCEEE
Confidence 3457777887776 899999999999999998655432 1223344556778888888999
Q ss_pred eCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee---EEEe-CCCceeeEEE
Q 014003 166 KGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSA---SVIN-LGAEVGSLIC 241 (432)
Q Consensus 166 ~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~---~~~~-~~~~~~~~~~ 241 (432)
+|+.||.|++||+.++ +.+..+.+|...|.+++|+ +++|++|+.||+|++||+.+++.. ..+. +...+.++..
T Consensus 188 sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 264 (435)
T 1p22_A 188 TGSSDSTVRVWDVNTG-EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 264 (435)
T ss_dssp EEETTSCEEEEESSSC-CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE
T ss_pred EEcCCCeEEEEECCCC-cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe
Confidence 9999999999999988 6788999999999999996 469999999999999999988765 3333 4556777777
Q ss_pred CCCEEEEE-cCCeEEEEEccCCceE-eecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCe
Q 014003 242 EGPWVFVG-MPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (432)
Q Consensus 242 ~~~~l~~~-~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v 319 (432)
++.+++++ .|+.|++||+++++.. .+.+|...|.++.++++.+++|+.||.|++||++++. .+..+.+|...|
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~h~~~v 339 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA-----CLRVLEGHEELV 339 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCE
T ss_pred CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCC-----EEEEEeCCcCcE
Confidence 77777654 7999999999998765 5678999999999998899999999999999999864 577888999999
Q ss_pred EEEEEeCCEEEEEeCCCeEEEEECCCCc---------eEEEecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCcee
Q 014003 320 TCLAVGGKRLYSGSMDNTIRVWDLDTLE---------AVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLE 390 (432)
Q Consensus 320 ~~l~~~~~~l~sgs~dg~I~vwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 390 (432)
.++++++++|++|+.||.|++||+++++ ++..+.+|...|.++.+++.+|++++.||.|++||+.+.....
T Consensus 340 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 340 RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp EEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC--------
T ss_pred EEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 9999999999999999999999998776 8999999999999999999999999999999999998765443
No 44
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.7e-35 Score=276.95 Aligned_cols=243 Identities=16% Similarity=0.159 Sum_probs=195.5
Q ss_pred CCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCC--CceEEeeccCce
Q 014003 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLSGNC 164 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 164 (432)
..|...|.+++|+|+++ +++|+.||+|+|||+.++...... ......|.. ..+++.+.+..+
T Consensus 79 ~~~~~~v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~---------------~~~~~~H~~~V~~v~~spdg~~l 142 (344)
T 4gqb_B 79 VQTEAGVADLTWVGERG-ILVASDSGAVELWELDENETLIVS---------------KFCKYEHDDIVSTVSVLSSGTQA 142 (344)
T ss_dssp EEESSCEEEEEEETTTE-EEEEETTSEEEEEEECTTSSCEEE---------------EEEEECCSSCEEEEEECTTSSEE
T ss_pred eccCCCEEEEEEeCCCe-EEEEECCCEEEEEeccCCCceeEe---------------eccccCCCCCEEEEEECCCCCEE
Confidence 34667899999999975 668888999999998765431100 011122332 345566677799
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCC-CEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECC
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEG 243 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~ 243 (432)
++|+.|+.|++||+.++ +.+..+.+|.+.|.+++|++++ .+|++++.|++|++||+++++....+..
T Consensus 143 ~sgs~d~~i~iwd~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~----------- 210 (344)
T 4gqb_B 143 VSGSKDICIKVWDLAQQ-VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC----------- 210 (344)
T ss_dssp EEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------
T ss_pred EEEeCCCeEEEEECCCC-cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec-----------
Confidence 99999999999999988 8899999999999999999987 4789999999999999999887765431
Q ss_pred CEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeE
Q 014003 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (432)
Q Consensus 244 ~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 320 (432)
..+...+.+++++++ ++++|+.||.|++||+++++ .+..+.+|...|+
T Consensus 211 ------------------------~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~-----~~~~~~~h~~~v~ 261 (344)
T 4gqb_B 211 ------------------------SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS-----CVLSSAVHSQCVT 261 (344)
T ss_dssp ---------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-------CCEEEECCSSCEE
T ss_pred ------------------------ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc-----EEEEEcCCCCCEE
Confidence 234556888999875 78999999999999998864 4788899999999
Q ss_pred EEEEe--C-CEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--C-CEEEEEeCCCcEEEEEcCCCC
Q 014003 321 CLAVG--G-KRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--D-QYLLSCSLDNTIKVWIMTEEG 387 (432)
Q Consensus 321 ~l~~~--~-~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~s~dg~i~iwd~~~~~ 387 (432)
+++|+ + ++|++|+.|++|+|||+++++++ .+.+|...|.+++|+ + .+|++++.|++|++|++.+..
T Consensus 262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 99997 4 67999999999999999998765 578999999999998 3 478899999999999997653
No 45
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-34 Score=300.84 Aligned_cols=331 Identities=9% Similarity=0.049 Sum_probs=229.4
Q ss_pred CCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecC--CCceEEeec-cCcee
Q 014003 89 HKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTT--PKNVCYHWL-SGNCV 165 (432)
Q Consensus 89 h~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~ 165 (432)
|.+.|++++|+|+|.++++|+.||+|++||+.+.... + ....... ........+. ...+++++. ...++
T Consensus 97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~----~~i~~~~---~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-S----FKLDNLQ---KSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-E----EEECCHH---HHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-c----ceecccc---ccccccccCCCCeEEEEEccCCCCEEE
Confidence 5678999999999999999999999999998765421 0 0000000 0000001112 234555553 35889
Q ss_pred eCCCCCeEEEEeCCCCcEEEEEEecc------------------cCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee
Q 014003 166 KGDECRFWHSWFCGEGFTMLAKLEGH------------------KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSA 227 (432)
Q Consensus 166 ~g~~d~~i~vw~~~~~~~~~~~l~~H------------------~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~ 227 (432)
+|+.|+.| +||+.++ +.+..+.+| ...|++++|+|+|++|++|+.||+|++||+++++++
T Consensus 169 ~g~~dg~v-lWd~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVEN-EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EECSSCEE-EEETTTT-EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEeCCCcE-EEECCCC-ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 99999999 9999887 777777766 578999999999999999999999999999988776
Q ss_pred EEEeC-------------------CCceeeEEE----C---CCEEE----------------------------------
Q 014003 228 SVINL-------------------GAEVGSLIC----E---GPWVF---------------------------------- 247 (432)
Q Consensus 228 ~~~~~-------------------~~~~~~~~~----~---~~~l~---------------------------------- 247 (432)
..... ...+.++.. + +.+++
T Consensus 247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~ 326 (902)
T 2oaj_A 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN 326 (902)
T ss_dssp EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhh
Confidence 53111 112222221 1 01222
Q ss_pred -------------------------------------------EEcCCeEEEEEccCCceEe--------ecCCcCCEEE
Q 014003 248 -------------------------------------------VGMPNVVKAWHIESSAEFS--------LDGPVGEVYS 276 (432)
Q Consensus 248 -------------------------------------------~~~~~~i~vwd~~~~~~~~--------~~~~~~~v~~ 276 (432)
.+.++.|++|++.++.... +..+...|.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~ 406 (902)
T 2oaj_A 327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATT 406 (902)
T ss_dssp HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEE
T ss_pred hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeE
Confidence 2334556666654443211 1122234444
Q ss_pred EE----------------------------------EcCC--EEEEEECCCcEEEEECCCCCCCccccce-ee-----ec
Q 014003 277 MV----------------------------------VANE--MLFAGAQDGNILVWKGIPNTQNPFQLAA-LL-----KG 314 (432)
Q Consensus 277 l~----------------------------------~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~-~~-----~~ 314 (432)
++ ++++ ++++|+.|++|++||+.++......... .+ .+
T Consensus 407 ~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~ 486 (902)
T 2oaj_A 407 SMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA 486 (902)
T ss_dssp EEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS
T ss_pred EEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCC
Confidence 44 3455 8999999999999999887421101111 11 17
Q ss_pred cccCeEEEEEe--CCEEEEEeCCCeEEEEECCCC---------------------------------------------c
Q 014003 315 HTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL---------------------------------------------E 347 (432)
Q Consensus 315 h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~---------------------------------------------~ 347 (432)
|...|.+++|+ +++||+|+.||+|+|||+.++ +
T Consensus 487 h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 566 (902)
T 2oaj_A 487 KELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFM 566 (902)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEE
T ss_pred CCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccc
Confidence 89999999998 999999999999999999866 2
Q ss_pred eEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeE-----Ee-eccCCcceEEEee-eeCCCC--CcEE
Q 014003 348 AVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEV-----AY-THNEDHGVLALGG-LNDPDG--NPVL 416 (432)
Q Consensus 348 ~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~-----~~-~~~~~~~~~~~~~-~~sp~g--~~~l 416 (432)
++..+.+|.+.|.+++++ | +||+|+.|++|++||+++...+.. +. +|...+..++|.. ...||| ..+|
T Consensus 567 ~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l 645 (902)
T 2oaj_A 567 PSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILM 645 (902)
T ss_dssp EEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEE
T ss_pred eeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEE
Confidence 477889999999999998 6 999999999999999987655432 11 4555566666621 112886 2399
Q ss_pred EEEeCCCeEEEeeC
Q 014003 417 ICSCNDDSVHLYEL 430 (432)
Q Consensus 417 ~sg~~Dg~I~iwdl 430 (432)
++|+.|++|++||+
T Consensus 646 ~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 646 VCGTDMGEVITYKI 659 (902)
T ss_dssp EEEETTSEEEEEEE
T ss_pred EEEecCCcEEEEEE
Confidence 99999999999997
No 46
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.6e-33 Score=260.84 Aligned_cols=240 Identities=19% Similarity=0.303 Sum_probs=205.2
Q ss_pred EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC-ceeeEE--ECCCEEEE-EcCCeEEEEE
Q 014003 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA-EVGSLI--CEGPWVFV-GMPNVVKAWH 258 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~-~~~~~~--~~~~~l~~-~~~~~i~vwd 258 (432)
+...++.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+.... .+.++. +++.++++ +.|+.+++|+
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 5577899999999999999999999999999999999999999888887543 455544 46676664 5899999999
Q ss_pred ccCCc-----eEeecCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEE
Q 014003 259 IESSA-----EFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLY 330 (432)
Q Consensus 259 ~~~~~-----~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~ 330 (432)
+.+.. ...+.+|...|.++.+.++ .+++++.|+.|++||+.++. ....+.+|...|.+++|+ +++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~ 200 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ-----QTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCc-----EEEEEcCCCCceEEEEECCCCCEEE
Confidence 98753 2356789999999999877 99999999999999998864 467788999999999997 88999
Q ss_pred EEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeecc--CCcceEEEee
Q 014003 331 SGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN--EDHGVLALGG 406 (432)
Q Consensus 331 sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~ 406 (432)
+|+.||.|++||+++++++.++.+|...|.+++++ +++|++++.||+|++||+++.+.+..+..+. ..+..+
T Consensus 201 sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~---- 276 (340)
T 1got_B 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV---- 276 (340)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE----
T ss_pred EEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE----
Confidence 99999999999999999999999999999999998 7899999999999999999877665543222 233344
Q ss_pred eeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 407 LNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 407 ~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.|+|+|+ +|++|+.||.|++||+.+
T Consensus 277 ~~s~~g~-~l~~g~~d~~i~vwd~~~ 301 (340)
T 1got_B 277 SFSKSGR-LLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp EECTTSS-EEEEEETTSEEEEEETTT
T ss_pred EECCCCC-EEEEECCCCeEEEEEccc
Confidence 4489999 999999999999999753
No 47
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5e-34 Score=313.44 Aligned_cols=318 Identities=15% Similarity=0.187 Sum_probs=258.4
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCC--ceEEeeccC
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHWLSG 162 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 162 (432)
.+.||.+.|++++|+|+|+++|+|+.||+|+||++.++... ..+..+... .+++.+.+.
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~-------------------~~~~~h~~~v~~~~~s~~~~ 670 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL-------------------LDIKAHEDEVLCCAFSSDDS 670 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-------------------EEECCCSSCEEEEEECTTSS
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEE-------------------EEeccCCCCEEEEEEecCCC
Confidence 56789999999999999999999999999999987665421 111122222 455666777
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecC--CCCEEEEEeCCCcEEEEeCCCCceeEEEeC-CCceeeE
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL--RSDKLYSGSRDGTVQLWDCHTGQSASVINL-GAEVGSL 239 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~--~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~~~~ 239 (432)
.+++|+.|+.|++||+.++ +.+..+.+|...|.+++|+| ++.++++|+.|++|++||+.++++...+.. ...+.++
T Consensus 671 ~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 671 YIATCSADKKVKIWDSATG-KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749 (1249)
T ss_dssp EEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred EEEEEeCCCeEEEEECCCC-ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence 9999999999999999988 77889999999999999999 566899999999999999999998888764 4455555
Q ss_pred E--ECCCEEEE-EcCCeEEEEEccCCceEe--------------------------------------------------
Q 014003 240 I--CEGPWVFV-GMPNVVKAWHIESSAEFS-------------------------------------------------- 266 (432)
Q Consensus 240 ~--~~~~~l~~-~~~~~i~vwd~~~~~~~~-------------------------------------------------- 266 (432)
. +++.++++ +.|+.|++||+.++....
T Consensus 750 ~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~ 829 (1249)
T 3sfz_A 750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS 829 (1249)
T ss_dssp EECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC
T ss_pred EEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC
Confidence 5 46666654 588999999987664221
Q ss_pred ------ecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCC
Q 014003 267 ------LDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN 336 (432)
Q Consensus 267 ------~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg 336 (432)
..+|...+.+++++++ .+++++.||.|++||+.++. ....+.+|...|.+++|+ ++++++++.||
T Consensus 830 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-----~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg 904 (1249)
T 3sfz_A 830 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL-----KVADCRGHLSWVHGVMFSPDGSSFLTASDDQ 904 (1249)
T ss_dssp CEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-----eeeecCCCccceEEEEECCCCCEEEEEeCCC
Confidence 1256778889999988 99999999999999998764 467788999999999997 88999999999
Q ss_pred eEEEEECCCCce-----------------------------EEEe--------cCCCCCcEEEEEc--CCEEEEEeCCCc
Q 014003 337 TIRVWDLDTLEA-----------------------------VMTL--------NGHTDAPMSLLCW--DQYLLSCSLDNT 377 (432)
Q Consensus 337 ~I~vwd~~~~~~-----------------------------~~~~--------~~~~~~v~~~~~~--~~~l~s~s~dg~ 377 (432)
.|++||+.+... +... ..+...+.+++++ ++++++++.||.
T Consensus 905 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~ 984 (1249)
T 3sfz_A 905 TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGA 984 (1249)
T ss_dssp CEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSC
T ss_pred eEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCC
Confidence 999999753210 0001 1123457777777 789999999999
Q ss_pred EEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 378 IKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 378 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
|++||+.+++....+..|...+..+++ +|+|+ ++++++.||.|++||+.+
T Consensus 985 i~i~d~~~~~~~~~~~~h~~~v~~l~~----s~dg~-~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 985 IKIIELPNNRVFSSGVGHKKAVRHIQF----TADGK-TLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp CEEEETTTTSCEEECCCCSSCCCCEEE----CSSSS-CEEEECSSSBEEEEETTT
T ss_pred EEEEEcCCCceeeecccCCCceEEEEE----CCCCC-EEEEEcCCCEEEEEECCC
Confidence 999999999988888889998888887 89999 899999999999999864
No 48
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.5e-35 Score=319.53 Aligned_cols=336 Identities=19% Similarity=0.218 Sum_probs=266.0
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCC-------------------CCcccccCCCCC------
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVP-------------------NKSSLDCSTGSD------ 139 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~-------------------~~~~~~~~~~~~------ 139 (432)
.+.+|.+.|.+++|+|+|.++++++.||+|++|++..+..... .......+....
T Consensus 738 ~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 817 (1249)
T 3sfz_A 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 817 (1249)
T ss_dssp EECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE
T ss_pred eecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc
Confidence 4578999999999999999999999999999999876431100 000001111000
Q ss_pred ----------CCCCceeee-e--cCCCceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCE
Q 014003 140 ----------DSGSKRTLE-R--TTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDK 206 (432)
Q Consensus 140 ----------~~~~~~~~~-~--~~~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~ 206 (432)
......... . .....+++.+....+++|+.|+.|++|++.++ ..+..+.+|...|.+++|+|++++
T Consensus 818 ~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~ 896 (1249)
T 3sfz_A 818 KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRGHLSWVHGVMFSPDGSS 896 (1249)
T ss_dssp TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSE
T ss_pred CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCCCccceEEEEECCCCCE
Confidence 000000010 1 12235566777779999999999999999988 778899999999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCce-----------------------------eE---------EEeCCCceeeEE--ECCCEE
Q 014003 207 LYSGSRDGTVQLWDCHTGQS-----------------------------AS---------VINLGAEVGSLI--CEGPWV 246 (432)
Q Consensus 207 l~s~s~Dg~v~iWd~~~~~~-----------------------------~~---------~~~~~~~~~~~~--~~~~~l 246 (432)
|++++.||+|++||+.+... .. .......+.++. +++.++
T Consensus 897 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 976 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV 976 (1249)
T ss_dssp EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEE
T ss_pred EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEE
Confidence 99999999999999753110 00 011122233333 466666
Q ss_pred EEE-cCCeEEEEEccCCceE-eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEE
Q 014003 247 FVG-MPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (432)
Q Consensus 247 ~~~-~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l 322 (432)
+++ .++.|++|++.++... ...+|...|.+++|+++ ++++++.||.|++||+.++.. .....|...|.++
T Consensus 977 ~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~------~~~~~~~~~v~~~ 1050 (1249)
T 3sfz_A 977 AFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY------VFLQAHQETVKDF 1050 (1249)
T ss_dssp EEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE------ECCBCCSSCEEEE
T ss_pred EEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce------EEEecCCCcEEEE
Confidence 655 8899999999988755 56789999999999988 899999999999999988742 2456899999999
Q ss_pred EEe-CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCc
Q 014003 323 AVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDH 399 (432)
Q Consensus 323 ~~~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 399 (432)
.++ +..+++++.||.|++||+.+++.+..+.+|...+.+++++ +++|++++.|++|++||+.+++.+..+..|...+
T Consensus 1051 ~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v 1130 (1249)
T 3sfz_A 1051 RLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCV 1130 (1249)
T ss_dssp EECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCE
T ss_pred EEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcE
Confidence 998 7889999999999999999999999999999999999998 6899999999999999999999888888888888
Q ss_pred ceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 400 GVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 400 ~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
..+++ +|+|+ +|++|+.||.|++||+.+
T Consensus 1131 ~~~~~----s~dg~-~lat~~~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A 1131 RCSAF----SLDGI-LLATGDDNGEIRIWNVSD 1158 (1249)
T ss_dssp EEEEE----CSSSS-EEEEEETTSCCCEEESSS
T ss_pred EEEEE----CCCCC-EEEEEeCCCEEEEEECCC
Confidence 77777 89999 999999999999999864
No 49
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.3e-32 Score=252.15 Aligned_cols=269 Identities=21% Similarity=0.315 Sum_probs=219.4
Q ss_pred eEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEE--ecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC
Q 014003 155 VCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKL--EGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (432)
Q Consensus 155 ~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l--~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 232 (432)
.|..|..+.+++.+.|++|++||++++ +.+..+ .+|...|++++|+|++++|++|+.||+|++||+++++++..+..
T Consensus 29 ~~l~WS~~~~lAvg~D~tV~iWd~~tg-~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~ 107 (318)
T 4ggc_A 29 NLVDWSSGNVLAVALDNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS 107 (318)
T ss_dssp BCEEECTTSEEEEEETTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred eEEEECCCCEEEEEeCCEEEEEECCCC-CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecC
Confidence 456676665666667999999999887 445544 57888999999999999999999999999999999999988875
Q ss_pred C-CceeeEEECCCEEEEE-cCCeEEEEEccCCce--EeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCcc
Q 014003 233 G-AEVGSLICEGPWVFVG-MPNVVKAWHIESSAE--FSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPF 306 (432)
Q Consensus 233 ~-~~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~--~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~ 306 (432)
+ ..+.++...+.+++++ .++.+++|+...... ....+|...+..+.+.++ ++++++.||.|++||+++++.. .
T Consensus 108 h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~ 186 (318)
T 4ggc_A 108 HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG-W 186 (318)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB-S
T ss_pred ccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc-c
Confidence 4 4455666777777654 789999999887653 467789999999999887 9999999999999999876542 2
Q ss_pred ccceeeeccccCeEEEEEe---CCEE--EEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEe--CCCc
Q 014003 307 QLAALLKGHTRPVTCLAVG---GKRL--YSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCS--LDNT 377 (432)
Q Consensus 307 ~~~~~~~~h~~~v~~l~~~---~~~l--~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s--~dg~ 377 (432)
........+...|.++.+. ...+ ++++.++.|++||.+......... +...+..+.+. ++.+++++ .|+.
T Consensus 187 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~ 265 (318)
T 4ggc_A 187 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQ 265 (318)
T ss_dssp CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCC
T ss_pred cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCE
Confidence 3345566788899999886 4443 566788999999999988877665 55667777776 56666554 7999
Q ss_pred EEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 378 IKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 378 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
|++||+++++.+..+.+|...+..+++ +|+|+ +|++|+.||+|+|||+.
T Consensus 266 i~iwd~~~~~~~~~l~gH~~~V~~l~~----spdg~-~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 266 LVIWKYPTMAKVAELKGHTSRVLSLTM----SPDGA-TVASAAADETLRLWRCF 314 (318)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEE----CTTSS-CEEEEETTTEEEEECCS
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEE----cCCCC-EEEEEecCCeEEEEECC
Confidence 999999999999999999988877777 89999 89999999999999985
No 50
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.9e-34 Score=270.89 Aligned_cols=286 Identities=16% Similarity=0.149 Sum_probs=223.7
Q ss_pred CCCCCCCCCCCCCCCCCc-eecCCCCC---CCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceE--Ee
Q 014003 85 PVSNHKKSPPSYNCPKNN-VRVSSGSE---EGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVC--YH 158 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g-~~las~~~---Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 158 (432)
.+.+|.+.|.+++|+|+| .++++|+. ||+|+||++.++... ......+.....| +.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~------------------~~~~~~~~~~v~~~~~~ 74 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK------------------LLREIEKAKPIKCGTFG 74 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE------------------EEEEEEESSCEEEEECT
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc------------------ceeeecccCcEEEEEEc
Confidence 457899999999999999 45677876 999999987654320 0111123333344 44
Q ss_pred ec---cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEE------ecCCCCEEEEEeCCCcEEEEeCCCCc-eeE
Q 014003 159 WL---SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIA------LPLRSDKLYSGSRDGTVQLWDCHTGQ-SAS 228 (432)
Q Consensus 159 ~~---~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~------~~~~~~~l~s~s~Dg~v~iWd~~~~~-~~~ 228 (432)
+. +..+++|+.|+.|++||+.++...+..+.+|...|.+++ |+|++++|++++.||+|++||+.+++ ...
T Consensus 75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp TCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred CCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence 44 368999999999999999887447888999999999995 57899999999999999999999887 667
Q ss_pred EEeCCC-----ceeeEE------ECCCEEEEE-cCCeEEEEEccCCceEeecCCcCCEEEEEEcC---C--EEEEEECCC
Q 014003 229 VINLGA-----EVGSLI------CEGPWVFVG-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN---E--MLFAGAQDG 291 (432)
Q Consensus 229 ~~~~~~-----~~~~~~------~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~---~--~l~~g~~dg 291 (432)
.+.... .+.++. +++.+++++ .++.|++||+++++......+...|.++.++| + .+++++.||
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence 665422 455554 577777655 77999999999999888888899999999997 4 999999999
Q ss_pred cEEEEECCCCCCCccccceeeeccccCeEEEEEe--CC-EEEEEeCCCeEEEEECCCC-------------------ceE
Q 014003 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GK-RLYSGSMDNTIRVWDLDTL-------------------EAV 349 (432)
Q Consensus 292 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~sgs~dg~I~vwd~~~~-------------------~~~ 349 (432)
.|++||++++..........+.+|...|++++|+ +. +|++++.||.|++||++++ +++
T Consensus 235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~ 314 (357)
T 3i2n_A 235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLL 314 (357)
T ss_dssp EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEE
T ss_pred eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccccee
Confidence 9999999876532111122345899999999998 44 7999999999999999754 467
Q ss_pred EEecCCCCCcEEEEEc--CCEEE-EEeCCCcEEEEEcCCCCc
Q 014003 350 MTLNGHTDAPMSLLCW--DQYLL-SCSLDNTIKVWIMTEEGN 388 (432)
Q Consensus 350 ~~~~~~~~~v~~~~~~--~~~l~-s~s~dg~i~iwd~~~~~~ 388 (432)
..+.+|...|.+++|+ +++|+ +++.|+.|++||+.+.+.
T Consensus 315 ~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 315 QNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred eccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 8889999999999998 56777 899999999999987543
No 51
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-34 Score=276.76 Aligned_cols=242 Identities=13% Similarity=0.031 Sum_probs=183.6
Q ss_pred CCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCC--CceEEeeccCce
Q 014003 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLSGNC 164 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 164 (432)
..|.++|.+++|+|+|++||+|+.||+|+||++.+.... . ...+..+.. ..+++.+....+
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~--~---------------~~~~~~h~~~v~~~~~s~~~~~l 70 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWK--H---------------ARTFSDHDKIVTCVDWAPKSNRI 70 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEE--E---------------CCCBCCCSSCEEEEEECTTTCCE
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceE--E---------------EEEEecCCceEEEEEEeCCCCEE
Confidence 346778999999999999999999999999987754200 0 001111222 244555566789
Q ss_pred eeCCCCCeEEEEeCCCCc--EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCce---eEEEeCCCceeeE
Q 014003 165 VKGDECRFWHSWFCGEGF--TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS---ASVINLGAEVGSL 239 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~--~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~---~~~~~~~~~~~~~ 239 (432)
++|+.|+.|++||+.++. .....+.+|...|.+++|+|++++|++++.|++|++||+++++. ...
T Consensus 71 ~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------- 140 (377)
T 3dwl_C 71 VTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH---------- 140 (377)
T ss_dssp EEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE----------
T ss_pred EEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE----------
Confidence 999999999999998762 35677889999999999999999999999999999999987753 222
Q ss_pred EECCCEEEEEcCCeEEEEEccCCceEeecC-CcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCC------------
Q 014003 240 ICEGPWVFVGMPNVVKAWHIESSAEFSLDG-PVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQN------------ 304 (432)
Q Consensus 240 ~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~------------ 304 (432)
+.. |...|.+++++|+ ++++++.|+.|++||+......
T Consensus 141 ---------------------------~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 193 (377)
T 3dwl_C 141 ---------------------------LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRL 193 (377)
T ss_dssp ---------------------------ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCC
T ss_pred ---------------------------eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccccccccc
Confidence 234 7889999999988 8999999999999998643211
Q ss_pred -ccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCce----EEEecCCCCCcEEEEEc--CCEEEEEeCC
Q 014003 305 -PFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA----VMTLNGHTDAPMSLLCW--DQYLLSCSLD 375 (432)
Q Consensus 305 -~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~s~d 375 (432)
..++...+ +|...|.+++|+ +++|++++.||.|++||+++++. +..+.+|...+.++.++ +++|++++.|
T Consensus 194 ~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 272 (377)
T 3dwl_C 194 PFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNY 272 (377)
T ss_dssp CEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSS
T ss_pred chhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCC
Confidence 12344455 899999999997 88999999999999999999988 88899999999999998 6777777655
Q ss_pred CcEEEEEcC
Q 014003 376 NTIKVWIMT 384 (432)
Q Consensus 376 g~i~iwd~~ 384 (432)
+.+ +|+..
T Consensus 273 ~~~-~~~~~ 280 (377)
T 3dwl_C 273 SPI-LLQGN 280 (377)
T ss_dssp SEE-EECCC
T ss_pred cEE-EEEeC
Confidence 554 77665
No 52
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.8e-33 Score=269.34 Aligned_cols=277 Identities=12% Similarity=0.105 Sum_probs=232.3
Q ss_pred eeecCCCceEEeeccCceeeCCCCCeEEEEeCCCCc-----EEEEEEecccCcEEEEEecCC----C---CEEEEEeCCC
Q 014003 147 LERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEGF-----TMLAKLEGHKKAVSGIALPLR----S---DKLYSGSRDG 214 (432)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-----~~~~~l~~H~~~V~~l~~~~~----~---~~l~s~s~Dg 214 (432)
+..|.....|..|....+++|+.|+.|++|++.++. ..+..+.+|...|++++|+|+ + ++|++++.||
T Consensus 12 ~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 12 GKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp SSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred hhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 344556677777777899999999999999998763 257788899999999999999 9 9999999999
Q ss_pred cEEEEeCCCCce-----eEEEeCC------CceeeEE------ECCCE-EEE-EcCCeEEEEEccC------CceE----
Q 014003 215 TVQLWDCHTGQS-----ASVINLG------AEVGSLI------CEGPW-VFV-GMPNVVKAWHIES------SAEF---- 265 (432)
Q Consensus 215 ~v~iWd~~~~~~-----~~~~~~~------~~~~~~~------~~~~~-l~~-~~~~~i~vwd~~~------~~~~---- 265 (432)
+|++||+.+++. ...+... ..+.++. +++.. +++ +.++.|++||+.. +...
T Consensus 92 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 171 (397)
T 1sq9_A 92 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 171 (397)
T ss_dssp CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccC
Confidence 999999998886 6666644 5565554 34666 554 5899999999988 4322
Q ss_pred --ee-------cCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeec---c---ccCeEEEEEe--CC
Q 014003 266 --SL-------DGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG---H---TRPVTCLAVG--GK 327 (432)
Q Consensus 266 --~~-------~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~---h---~~~v~~l~~~--~~ 327 (432)
.+ ..+...+.+++++++ .+++++.||.|++||++++. .+..+.. | ...|.+++|+ ++
T Consensus 172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~h~~~~~~i~~i~~~~~~~ 246 (397)
T 1sq9_A 172 TLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLR-----PLYNFESQHSMINNSNSIRSVKFSPQGS 246 (397)
T ss_dssp EEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTE-----EEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred cceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCc-----eeEEEeccccccccCCccceEEECCCCC
Confidence 33 457888999999988 99999999999999998753 4677777 8 9999999997 89
Q ss_pred EEEEEeCC---CeEEEEECCCCceEEEecC-------------CCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCce
Q 014003 328 RLYSGSMD---NTIRVWDLDTLEAVMTLNG-------------HTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNL 389 (432)
Q Consensus 328 ~l~sgs~d---g~I~vwd~~~~~~~~~~~~-------------~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~ 389 (432)
+|++++.| |.|++||+++++++..+.+ |...|.++.++ +++|++++.||.|++||+++.+.+
T Consensus 247 ~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 247 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 326 (397)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 99999999 9999999999999999998 99999999998 789999999999999999999888
Q ss_pred eEEe------ec---------------cCCcceEEEeeeeCCCCC---------cEEEEEeCCCeEEEeeCCC
Q 014003 390 EVAY------TH---------------NEDHGVLALGGLNDPDGN---------PVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 390 ~~~~------~~---------------~~~~~~~~~~~~~sp~g~---------~~l~sg~~Dg~I~iwdl~s 432 (432)
..+. .| ...+..+++ +|+|+ .+|++++.||.|++||+++
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~----~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 327 TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF----LKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp EEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEE----ECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred EEEecccCcccchhhhhccccccccccCCceeEEEe----ccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 8888 66 666666665 79982 3999999999999999864
No 53
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-34 Score=280.37 Aligned_cols=281 Identities=16% Similarity=0.228 Sum_probs=215.9
Q ss_pred CC-CCCCCCCCCCCCCC-CceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccC
Q 014003 85 PV-SNHKKSPPSYNCPK-NNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG 162 (432)
Q Consensus 85 ~~-~gh~~~v~~~~~s~-~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (432)
.+ ++|.+.|++++|+| +|.+||+|+.||+|+||++........
T Consensus 57 ~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~----------------------------------- 101 (437)
T 3gre_A 57 TLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV----------------------------------- 101 (437)
T ss_dssp EECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC-----------------------------------
T ss_pred eeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc-----------------------------------
Confidence 44 78999999999999 999999999999999997543110000
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCC---CCceeEEEe--------
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH---TGQSASVIN-------- 231 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~---~~~~~~~~~-------- 231 (432)
.+....+ +|...|++++|+|++++|++++.||+|++||++ +++......
T Consensus 102 -------------------~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~ 161 (437)
T 3gre_A 102 -------------------YSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKIN 161 (437)
T ss_dssp -------------------CSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred -------------------cceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEE
Confidence 0011122 589999999999999999999999999999995 565554433
Q ss_pred -----CCCceeeEE----ECCCEEE-EEcCCeEEEEEccCCceE-eecC--CcCCEEEEEEcCC--EEEEEECCCcEEEE
Q 014003 232 -----LGAEVGSLI----CEGPWVF-VGMPNVVKAWHIESSAEF-SLDG--PVGEVYSMVVANE--MLFAGAQDGNILVW 296 (432)
Q Consensus 232 -----~~~~~~~~~----~~~~~l~-~~~~~~i~vwd~~~~~~~-~~~~--~~~~v~~l~~~~~--~l~~g~~dg~i~~w 296 (432)
....+.++. .++.+++ ++.|+.|++||+++++.. .+.. |...|.+++++++ ++++|+.||.|++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 241 (437)
T 3gre_A 162 LKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIW 241 (437)
T ss_dssp GGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred ccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 222333333 2355555 458899999999998865 4445 7899999999987 89999999999999
Q ss_pred ECCCCCCCccccceeee-ccccCeEEEEEe------CCEEEEEeCCCeEEEEECCCCceEEEecCCC-------------
Q 014003 297 KGIPNTQNPFQLAALLK-GHTRPVTCLAVG------GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT------------- 356 (432)
Q Consensus 297 d~~~~~~~~~~~~~~~~-~h~~~v~~l~~~------~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~------------- 356 (432)
|++.+. .+..+. .|..+|.+++++ +.+|++|+.||.|++||+++++++..+.+|.
T Consensus 242 d~~~~~-----~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (437)
T 3gre_A 242 DIRFNV-----LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEK 316 (437)
T ss_dssp ETTTTE-----EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCS
T ss_pred EcCCcc-----EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccc
Confidence 998853 455554 678899999764 4589999999999999999999988887553
Q ss_pred -------------CCcEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceeEEee----------------------------
Q 014003 357 -------------DAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYT---------------------------- 394 (432)
Q Consensus 357 -------------~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------------------------- 394 (432)
..|.+++++ +++|++++.|+.|++||+.+++....+..
T Consensus 317 ~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (437)
T 3gre_A 317 GLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTS 396 (437)
T ss_dssp SGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC---
T ss_pred ccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEeccccc
Confidence 346677777 57899999999999999999887776665
Q ss_pred ---------ccCCcceEEEeeeeCCC-CCcEEEEEeCCCeEEEee
Q 014003 395 ---------HNEDHGVLALGGLNDPD-GNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 395 ---------~~~~~~~~~~~~~~sp~-g~~~l~sg~~Dg~I~iwd 429 (432)
|...+..+++ +++ +..+|++|+.||.|+||+
T Consensus 397 ~~~~~~~~~h~~~I~~i~~----~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 397 THSVDDSLYHHDIINSIST----CEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ----------CCCEEEEEE----EESSSSEEEEEEETTSCEEEEC
T ss_pred ccccCcccccccceeeEee----eccCCceEEEEEcCCceEEEeC
Confidence 4555555555 444 234999999999999995
No 54
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.4e-34 Score=272.70 Aligned_cols=248 Identities=19% Similarity=0.159 Sum_probs=194.0
Q ss_pred CCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCC--CceEEeeccCc
Q 014003 86 VSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLSGN 163 (432)
Q Consensus 86 ~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 163 (432)
..+|...|.+++|+|+++++++ +.||+|+|||+.++....... .....+.. ..+++.+.+..
T Consensus 90 ~~~~~~~V~~~~~s~d~~~l~~-s~dg~v~lWd~~~~~~~~~~~---------------~~~~~h~~~V~~v~~spdg~~ 153 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKGILVA-SDSGAVELWEILEKESLLVNK---------------FAKYEHDDIVKTLSVFSDGTQ 153 (357)
T ss_dssp EEECSSCEEEEEEETTTEEEEE-ETTSCEEEC--------CCCC---------------EEECCCSSCEEEEEECSSSSE
T ss_pred cCCCCCCEEEEEEcCCCCEEEE-ECCCEEEEeeccccceeEEEe---------------eccCCCCCCEEEEEECCCCCE
Confidence 3579999999999999987764 569999999987654321111 01111222 34556667779
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCC-EEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEEC
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICE 242 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~ 242 (432)
+++|+.|+.|++||+.++ +.+..+.+|...|++++|++++. ++++++.||+|++||+++++....+.
T Consensus 154 l~sgs~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~----------- 221 (357)
T 4g56_B 154 AVSGGKDFSVKVWDLSQK-AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID----------- 221 (357)
T ss_dssp EEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC-----------
T ss_pred EEEEeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee-----------
Confidence 999999999999999988 88899999999999999999874 79999999999999999887554322
Q ss_pred CCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCe
Q 014003 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (432)
Q Consensus 243 ~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v 319 (432)
...+...+.+++|+|+ ++++|+.|+.|++||+++++ ....+.+|...|
T Consensus 222 ------------------------~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~-----~~~~~~~~~~~v 272 (357)
T 4g56_B 222 ------------------------FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD-----SAQTSAVHSQNI 272 (357)
T ss_dssp ------------------------CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG-----GCEEECCCSSCE
T ss_pred ------------------------eccccccccchhhhhcccceEEEeecccceeEEECCCCc-----EeEEEeccceeE
Confidence 2456677899999876 78999999999999998864 577888999999
Q ss_pred EEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceeE
Q 014003 320 TCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEV 391 (432)
Q Consensus 320 ~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~ 391 (432)
++++|+ +++|++|+.|++|+|||+++++++..+ +|...|.+++|+ +.+|++++.||+|++||+.+......
T Consensus 273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~ 349 (357)
T 4g56_B 273 TGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTEN 349 (357)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-------
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc
Confidence 999996 468999999999999999999887765 799999999996 57999999999999999977654443
No 55
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-32 Score=250.41 Aligned_cols=272 Identities=17% Similarity=0.207 Sum_probs=224.8
Q ss_pred eeeecCCCceEEe-eccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 014003 146 TLERTTPKNVCYH-WLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG 224 (432)
Q Consensus 146 ~~~~~~~~~~~~~-~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~ 224 (432)
.+..|.....|.. +....+++|+.||.|++||+.++ +....+..|...|.+++|+|++++|++++.||.|++|++...
T Consensus 13 ~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 91 (313)
T 3odt_A 13 TLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQ-WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT 91 (313)
T ss_dssp EECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSS-EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCC
T ss_pred HhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCC-EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeec
Confidence 3444444444444 55668999999999999999877 778888999999999999999999999999999999998765
Q ss_pred ---ceeEEEe-CCCceeeEEECCCEEEE-EcCCeEEEEEccCCceEeecCCcCCEEEEEEcC-C--EEEEEECCCcEEEE
Q 014003 225 ---QSASVIN-LGAEVGSLICEGPWVFV-GMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN-E--MLFAGAQDGNILVW 296 (432)
Q Consensus 225 ---~~~~~~~-~~~~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~-~--~l~~g~~dg~i~~w 296 (432)
+....+. +...+.++..++..+++ +.++.|++|| ..........+...+.++.+.+ + .+++++.||.|++|
T Consensus 92 ~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 92 SGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170 (313)
T ss_dssp TTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence 3444444 45667777777766665 5899999999 3334556778999999998865 3 99999999999999
Q ss_pred ECCCCCCCccccceeeec-cccCeEEEEEe-CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc-CCEEEEEe
Q 014003 297 KGIPNTQNPFQLAALLKG-HTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCS 373 (432)
Q Consensus 297 d~~~~~~~~~~~~~~~~~-h~~~v~~l~~~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~s 373 (432)
|... ....+.. |...+.+++++ ...+++++.||.|++||+++++++..+.+|...+.++.++ +..|++++
T Consensus 171 d~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 243 (313)
T 3odt_A 171 QNDK-------VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG 243 (313)
T ss_dssp ETTE-------EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEE
T ss_pred ecCc-------eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEe
Confidence 9332 3555555 89999999997 5559999999999999999999999999999999999998 34799999
Q ss_pred CCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 374 LDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 374 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.||.|++||+++++.+..+..|...+..+++ +|+++ +++++.||.|++||+++
T Consensus 244 ~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~----~~~~~--~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 244 EDRTVRIWSKENGSLKQVITLPAISIWSVDC----MSNGD--IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp TTSEEEEECTTTCCEEEEEECSSSCEEEEEE----CTTSC--EEEEETTSCEEEEESCG
T ss_pred cCCEEEEEECCCCceeEEEeccCceEEEEEE----ccCCC--EEEEeCCCcEEEEeCCC
Confidence 9999999999999998888888877776666 89998 55688999999999863
No 56
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.9e-32 Score=256.97 Aligned_cols=276 Identities=18% Similarity=0.247 Sum_probs=228.4
Q ss_pred CCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCC--CceEEeeccCce
Q 014003 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLSGNC 164 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 164 (432)
.+|.+.|.+++|+|+|+++++++ ||++++|++..+....+.... . ...+.. ..+++.+....+
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~-~-------------~~~~~~~v~~~~~~~~~~~l 112 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQL-D-------------CLNRDNYIRSCKLLPDGCTL 112 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEE-E-------------CSCTTSBEEEEEECTTSSEE
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecc-c-------------ccCCCCcEEEEEEcCCCCEE
Confidence 47999999999999999999999 999999998765431111000 0 001111 244555666689
Q ss_pred eeCCCCCeEEEEeCCCCc-EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC-CCceeeEEE-
Q 014003 165 VKGDECRFWHSWFCGEGF-TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL-GAEVGSLIC- 241 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~-~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~~~~~~- 241 (432)
++++.|+.|++|++.++. .....+.+|...|.+++|+|++++|++++.||.|++||+++++....+.. ...+.++..
T Consensus 113 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 192 (337)
T 1gxr_A 113 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 192 (337)
T ss_dssp EEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEEC
Confidence 999999999999998762 36677889999999999999999999999999999999999998888874 455666654
Q ss_pred -CCCEEEE-EcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeecccc
Q 014003 242 -EGPWVFV-GMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 242 -~~~~l~~-~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
++..+++ +.++.|++||+++++......+...+.+++++++ .+++++.++.|++||+..+. ...+..|..
T Consensus 193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------~~~~~~~~~ 266 (337)
T 1gxr_A 193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------KYQLHLHES 266 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------EEEECCCSS
T ss_pred CCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC------eEEEcCCcc
Confidence 6666665 5899999999999988777778889999999988 89999999999999998764 345678999
Q ss_pred CeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 014003 318 PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMT 384 (432)
Q Consensus 318 ~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~ 384 (432)
.|.+++|+ +++|++++.||.|++||+++++.+.... |...+.++.++ +++|++++.||.|++|++.
T Consensus 267 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-CCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 99999997 8999999999999999999999886654 78889999988 6899999999999999973
No 57
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.3e-33 Score=269.52 Aligned_cols=285 Identities=11% Similarity=0.083 Sum_probs=209.8
Q ss_pred CCCCCCCCCCceecCCCCCCC-------cccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccC--
Q 014003 92 SPPSYNCPKNNVRVSSGSEEG-------TTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG-- 162 (432)
Q Consensus 92 ~v~~~~~s~~g~~las~~~Dg-------~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 162 (432)
+|++++|+|||++||+||.|. .|+||++......... .... .....+..+.....|+.+...
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~--~~~~-------~~~~~l~~~~~~v~s~~~~~~~~ 86 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE--QFHI-------LSEFALEDNDDSPTAIDASKGII 86 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH--HEEE-------EEEEECCTTSCCCCEEEEETTEE
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee--eeee-------eeEEEccCCCCceEEEEeCCCEE
Confidence 589999999999999987544 4999987665431100 0000 000001111222344555444
Q ss_pred ---------ceeeCCCCCeEEEEeCCCCcEEE---EEEe-----cccCcEEEEEecCCCCEEEEEe--CCCcEEEEeCCC
Q 014003 163 ---------NCVKGDECRFWHSWFCGEGFTML---AKLE-----GHKKAVSGIALPLRSDKLYSGS--RDGTVQLWDCHT 223 (432)
Q Consensus 163 ---------~~~~g~~d~~i~vw~~~~~~~~~---~~l~-----~H~~~V~~l~~~~~~~~l~s~s--~Dg~v~iWd~~~ 223 (432)
.+++|+.|+.+++|++......+ ...+ .++..+.+++|+|||++|++++ .|++|++||+++
T Consensus 87 ~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~ 166 (365)
T 4h5i_A 87 LVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD 166 (365)
T ss_dssp EEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT
T ss_pred EEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC
Confidence 34566788999999986542222 2222 3456699999999999987554 789999999999
Q ss_pred CceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCC
Q 014003 224 GQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPN 301 (432)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~ 301 (432)
++++..+. +...|.+++|+|+ ++++++ ++.+++|+..++
T Consensus 167 ~~~~~~~~--------------------------------------~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~ 207 (365)
T 4h5i_A 167 LTEKFEIE--------------------------------------TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTG 207 (365)
T ss_dssp TEEEEEEE--------------------------------------CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTC
T ss_pred CcEEEEeC--------------------------------------CCCceEEEEEccCCceEEecc-ceeEEEEEeccC
Confidence 88776543 4567889999998 666666 556777777766
Q ss_pred CCCccccceeeeccccCeEEEEEe--CCEEEEEeCCC----eEEEEECCCCce----EEEecCCCCCcEEEEEc--CCEE
Q 014003 302 TQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN----TIRVWDLDTLEA----VMTLNGHTDAPMSLLCW--DQYL 369 (432)
Q Consensus 302 ~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg----~I~vwd~~~~~~----~~~~~~~~~~v~~~~~~--~~~l 369 (432)
.. ........|...|.+++|+ ++++++++.|+ .+++||+..... ...+.+|...|.+++++ +++|
T Consensus 208 ~~---~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 208 SC---IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELA 284 (365)
T ss_dssp CE---EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEE
T ss_pred cc---eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCce
Confidence 42 2233456788899999997 88999999887 688999877654 45678899999999998 7899
Q ss_pred EEEeCCCcEEEEEcCCCCceeEE-eeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 370 LSCSLDNTIKVWIMTEEGNLEVA-YTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 370 ~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
++|+.|++|+|||+++++.+..+ .+|...+..++| +|||+ +|++|+.|++|||||++.
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f----Spdg~-~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI----SPDST-YVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE----CTTSC-EEEEEETTSEEEEEECCT
T ss_pred EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEE----CCCCC-EEEEEeCCCeEEEEEcCC
Confidence 99999999999999999888775 578888887777 89999 999999999999999963
No 58
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.6e-33 Score=268.95 Aligned_cols=297 Identities=17% Similarity=0.182 Sum_probs=231.6
Q ss_pred CCCCCCCCCCCCCCCCC-CceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccC
Q 014003 84 LPVSNHKKSPPSYNCPK-NNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG 162 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~-~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (432)
..+.+|.+.|.+++|+| +|.+||+|+.||+|+||++.......... +.
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--------------------------~~----- 85 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYT--------------------------CK----- 85 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEE--------------------------EC-----
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEe--------------------------cc-----
Confidence 35678999999999999 99999999999999999876554310000 00
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~ 241 (432)
..... ......+|...|.+++|+| ++++|++++.||+|++||+.+++....+.....+..+..
T Consensus 86 -----------~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 149 (408)
T 4a11_B 86 -----------AVCSI-----GRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHM 149 (408)
T ss_dssp -----------EEEEE-----CTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred -----------ccccc-----cccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEe
Confidence 00000 0001246999999999999 788999999999999999999999999988877776663
Q ss_pred -----CCCEEE-EEcCCeEEEEEccCCce-EeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCC-------
Q 014003 242 -----EGPWVF-VGMPNVVKAWHIESSAE-FSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQN------- 304 (432)
Q Consensus 242 -----~~~~l~-~~~~~~i~vwd~~~~~~-~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~------- 304 (432)
++.+++ ++.++.|++||+++++. ..+..|...|.+++++|+ ++++++.||.|++||++.....
T Consensus 150 ~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~ 229 (408)
T 4a11_B 150 SPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH 229 (408)
T ss_dssp CSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT
T ss_pred ecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc
Confidence 233554 55899999999998764 466779999999999988 5899999999999999876421
Q ss_pred ----ccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCC------CcEEEEEc-CCEEEE
Q 014003 305 ----PFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD------APMSLLCW-DQYLLS 371 (432)
Q Consensus 305 ----~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~------~v~~~~~~-~~~l~s 371 (432)
..........|...|.+++|+ +++|++++.||.|++||+++++....+..+.. ........ +..+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (408)
T 4a11_B 230 NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF 309 (408)
T ss_dssp TTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE
T ss_pred ccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEE
Confidence 011122236789999999997 88999999999999999999887665543321 11222222 567888
Q ss_pred EeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 372 CSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 372 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
++.|+.|++||+.+++.+..+..|...+..+++ +|+++ +|++++.||.|++||+++
T Consensus 310 ~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~----s~~~~-~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 310 VPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVF----QSNFQ-ELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp EEETTEEEEEETTTCCEEEEECCCSSCEEEEEE----ETTTT-EEEEEETTSCEEEEEECC
T ss_pred EecCCEEEEEECcCCcceeeeccCCCeEEEEEE----cCCCC-EEEEECCCCeEEEEeCCC
Confidence 889999999999999999999889888877777 89998 999999999999999864
No 59
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=298.84 Aligned_cols=319 Identities=8% Similarity=0.003 Sum_probs=219.2
Q ss_pred CCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCcee
Q 014003 86 VSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCV 165 (432)
Q Consensus 86 ~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (432)
..||.+.|.+++|+|+|++||+|+.||+|+||+......... . . .......+++.+ +..++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~------~-~-----------~~~~V~~l~fsp-g~~L~ 73 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK------L-E-----------DRSAIKEMRFVK-GIYLV 73 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE------C-S-----------SCCCEEEEEEET-TTEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE------c-C-----------CCCCEEEEEEcC-CCEEE
Confidence 357999999999999999999999999999997654321000 0 0 001113455566 44699
Q ss_pred eCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEE-E-----------eCC
Q 014003 166 KGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV-I-----------NLG 233 (432)
Q Consensus 166 ~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~-~-----------~~~ 233 (432)
+++.|+.|++||+.++ +.+..+. |.+.|++++|+|++++|++|+.||+|++||+++++.... + .+.
T Consensus 74 S~s~D~~v~lWd~~~~-~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~ 151 (902)
T 2oaj_A 74 VINAKDTVYVLSLYSQ-KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL 151 (902)
T ss_dssp EEETTCEEEEEETTTC-SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred EEECcCeEEEEECCCC-cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC
Confidence 9999999999999887 5566675 778999999999999999999999999999998876311 1 123
Q ss_pred CceeeEEECC---CEEE-EEcCCeEEEEEccCCceEe-ecCC------------------cCCEEEEEEcCC--EEEEEE
Q 014003 234 AEVGSLICEG---PWVF-VGMPNVVKAWHIESSAEFS-LDGP------------------VGEVYSMVVANE--MLFAGA 288 (432)
Q Consensus 234 ~~~~~~~~~~---~~l~-~~~~~~i~vwd~~~~~~~~-~~~~------------------~~~v~~l~~~~~--~l~~g~ 288 (432)
..+.++.... ..++ ++.++.| +||+++++... +..+ ...|.+++|+|+ +|++|+
T Consensus 152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs 230 (902)
T 2oaj_A 152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH 230 (902)
T ss_dssp CCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred CCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE
Confidence 4566666432 3444 4588999 99999987653 2222 467999999998 999999
Q ss_pred CCCcEEEEECCCCCCCccccceeeec-------------cccCeEEEEEe-------CC---------------------
Q 014003 289 QDGNILVWKGIPNTQNPFQLAALLKG-------------HTRPVTCLAVG-------GK--------------------- 327 (432)
Q Consensus 289 ~dg~i~~wd~~~~~~~~~~~~~~~~~-------------h~~~v~~l~~~-------~~--------------------- 327 (432)
.||.|++||+++++....+.+..... |..+|.+++|. +.
T Consensus 231 ~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 231 EDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp TTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 99999999998764210000000001 22244455442 02
Q ss_pred -------------------------------------------------------EEEEEeCCCeEEEEECCCCceEEE-
Q 014003 328 -------------------------------------------------------RLYSGSMDNTIRVWDLDTLEAVMT- 351 (432)
Q Consensus 328 -------------------------------------------------------~l~sgs~dg~I~vwd~~~~~~~~~- 351 (432)
.+++++.||.|++||+.++.....
T Consensus 311 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~ 390 (902)
T 2oaj_A 311 GYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKA 390 (902)
T ss_dssp EECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCG
T ss_pred CCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccc
Confidence 344444556677777665543221
Q ss_pred ------ecCCCCCcEE----------------------------------EEEc--CCEEEEEeCCCcEEEEEcCCCCce
Q 014003 352 ------LNGHTDAPMS----------------------------------LLCW--DQYLLSCSLDNTIKVWIMTEEGNL 389 (432)
Q Consensus 352 ------~~~~~~~v~~----------------------------------~~~~--~~~l~s~s~dg~i~iwd~~~~~~~ 389 (432)
+..|...|.+ ++++ +++|++|+.|++|++||+.++...
T Consensus 391 ~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~ 470 (902)
T 2oaj_A 391 SLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQ 470 (902)
T ss_dssp GGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTT
T ss_pred ccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcccc
Confidence 2223333333 3333 579999999999999999877431
Q ss_pred --eEEe---------eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 390 --EVAY---------THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 390 --~~~~---------~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
..+. .|...+..++| +|+|+ +||+|+.||+|+|||+.
T Consensus 471 ~~~~~~~~l~~~~~~~h~~~V~svaf----spdg~-~LAsgs~DgtV~lwd~~ 518 (902)
T 2oaj_A 471 DNASFEVNLSRTLNKAKELAVDKISF----AAETL-ELAVSIETGDVVLFKYE 518 (902)
T ss_dssp TTBCEEEEHHHHTTCSSSCCEEEEEE----ETTTT-EEEEEETTSCEEEEEEE
T ss_pred CCceEEeechhhcCCCCCCceeEEEe----cCCCC-eEEEEecCcEEEEEEec
Confidence 1111 45556666666 89999 99999999999999974
No 60
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.8e-32 Score=260.83 Aligned_cols=267 Identities=20% Similarity=0.283 Sum_probs=225.9
Q ss_pred ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEe-cccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEe-
Q 014003 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLE-GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN- 231 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~-~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~- 231 (432)
..++.|....+++++.|+.|++|++.++. ....+. .|...|++++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 174 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGS-VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG 174 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCC-EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCc-EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecC
Confidence 45677778889999999999999998884 444444 489999999999999999999999999999999999888886
Q ss_pred CCCceeeEEECCCEEEE-EcCCeEEEEEccCCc--eEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCcc
Q 014003 232 LGAEVGSLICEGPWVFV-GMPNVVKAWHIESSA--EFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPF 306 (432)
Q Consensus 232 ~~~~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~--~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~ 306 (432)
+...+.++..++.++++ +.++.|++||++... ...+..|...|.+++++++ ++++|+.||.|++||++++.
T Consensus 175 ~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~---- 250 (401)
T 4aez_A 175 HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI---- 250 (401)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS----
T ss_pred CCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC----
Confidence 45667777777777665 489999999998433 4567789999999999988 99999999999999998754
Q ss_pred ccceeeeccccCeEEEEEe---CCEEEEEe--CCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEe--CCCc
Q 014003 307 QLAALLKGHTRPVTCLAVG---GKRLYSGS--MDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCS--LDNT 377 (432)
Q Consensus 307 ~~~~~~~~h~~~v~~l~~~---~~~l~sgs--~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s--~dg~ 377 (432)
....+..|...|.+++|+ ..++++++ .|+.|++||+++++++..+. +...+.++.++ ++++++++ .||.
T Consensus 251 -~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~ 328 (401)
T 4aez_A 251 -PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNN 328 (401)
T ss_dssp -EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCE
T ss_pred -ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCc
Confidence 466778899999999997 46777765 79999999999999999987 66779999998 68888854 8999
Q ss_pred EEEEEcCCCCceeE--EeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 378 IKVWIMTEEGNLEV--AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 378 i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
|++||+.+.+.... +..|...+..+++ +|+|+ +|++++.||.|++||+.+
T Consensus 329 i~v~~~~~~~~~~~~~~~~h~~~v~~~~~----s~dg~-~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 329 LSIWSYSSSGLTKQVDIPAHDTRVLYSAL----SPDGR-ILSTAASDENLKFWRVYD 380 (401)
T ss_dssp EEEEEEETTEEEEEEEEECCSSCCCEEEE----CTTSS-EEEEECTTSEEEEEECCC
T ss_pred EEEEecCCccceeEEEecCCCCCEEEEEE----CCCCC-EEEEEeCCCcEEEEECCC
Confidence 99999998655443 4567777777777 89999 999999999999999864
No 61
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.3e-32 Score=256.69 Aligned_cols=240 Identities=19% Similarity=0.306 Sum_probs=203.4
Q ss_pred EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC-ceeeEE--ECCCEEEEE-cCCeEEEEE
Q 014003 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA-EVGSLI--CEGPWVFVG-MPNVVKAWH 258 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~-~~~~~~--~~~~~l~~~-~~~~i~vwd 258 (432)
+...++.+|.+.|++++|+|++++|+||+.||+|++||..+++....+.... .+.++. +++..++++ .|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 4577899999999999999999999999999999999999998888777543 344443 577777765 799999999
Q ss_pred ccCCc-------eEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe----
Q 014003 259 IESSA-------EFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---- 325 (432)
Q Consensus 259 ~~~~~-------~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---- 325 (432)
+.... ...+..|...|.++.|+++ .+++++.|++|++||+.+++ .+..+.+|...|.+++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-----LLQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEEEEEECCCSS
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-----EEEEEcCCCCCeEEEEEEeCCC
Confidence 86532 3355678999999999988 89999999999999998864 577889999999999884
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccC--Ccce
Q 014003 326 GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE--DHGV 401 (432)
Q Consensus 326 ~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~ 401 (432)
+++|++|+.||.|++||+++++++..+.+|...|.+++++ +++|++++.|++|++||++..+.+..+..+.. .+..
T Consensus 210 g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~ 289 (354)
T 2pbi_B 210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS 289 (354)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeE
Confidence 5799999999999999999999999999999999999998 78999999999999999998776655443322 2233
Q ss_pred EEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 402 LALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 402 ~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+ .|+|+|+ +|++|+.|+.|++||+.+
T Consensus 290 ~----~~s~~g~-~l~~g~~d~~i~vwd~~~ 315 (354)
T 2pbi_B 290 V----DFSLSGR-LLFAGYNDYTINVWDVLK 315 (354)
T ss_dssp E----EECTTSS-EEEEEETTSCEEEEETTT
T ss_pred E----EEeCCCC-EEEEEECCCcEEEEECCC
Confidence 3 4589999 999999999999999853
No 62
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.2e-33 Score=265.34 Aligned_cols=279 Identities=15% Similarity=0.199 Sum_probs=225.5
Q ss_pred CCCCCCCCCCCCCCCCC---ceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeecc
Q 014003 85 PVSNHKKSPPSYNCPKN---NVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~---g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (432)
.+.+|.+.|.+++|+|+ |.+|++|+.||+|+||++...
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~--------------------------------------- 74 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS--------------------------------------- 74 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT---------------------------------------
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC---------------------------------------
Confidence 67889999999999999 699999998888888864331
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~ 241 (432)
+......+.+|...|++++|+|++++|++++.||+|++||+++++......+...+.++..
T Consensus 75 -------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~ 135 (368)
T 3mmy_A 75 -------------------GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHW 135 (368)
T ss_dssp -------------------SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred -------------------CceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEE
Confidence 1133467789999999999999999999999999999999999999988888888887764
Q ss_pred ----CCCEEE-EEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccc
Q 014003 242 ----EGPWVF-VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT 316 (432)
Q Consensus 242 ----~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~ 316 (432)
++.+++ ++.|+.|++||+++++..........+.++.+.++.+++++.++.+.+||+...... .......+.
T Consensus 136 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~ 212 (368)
T 3mmy_A 136 IKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE---FRRIESPLK 212 (368)
T ss_dssp EECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEE---EEECCCSCS
T ss_pred EeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccch---hhhcccccc
Confidence 444444 568999999999998866555556688899999999999999999999999876421 111112233
Q ss_pred cCeEEEEE--eCC----EEEEEeCCCeEEEEECCCC---ceEEEecCCCC------------CcEEEEEc--CCEEEEEe
Q 014003 317 RPVTCLAV--GGK----RLYSGSMDNTIRVWDLDTL---EAVMTLNGHTD------------APMSLLCW--DQYLLSCS 373 (432)
Q Consensus 317 ~~v~~l~~--~~~----~l~sgs~dg~I~vwd~~~~---~~~~~~~~~~~------------~v~~~~~~--~~~l~s~s 373 (432)
..+.++.+ +.. .+++++.||.|++||++.. +.+..+.+|.. .|.++.++ +++|++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 292 (368)
T 3mmy_A 213 HQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292 (368)
T ss_dssp SCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE
T ss_pred CCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc
Confidence 34444444 333 3999999999999999987 66778888876 69999998 67999999
Q ss_pred CCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 374 LDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 374 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
.||.|++||+.+++.+..+..|...+..+++ +|+|+ +|++++.|+..+.|+
T Consensus 293 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~----s~~g~-~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 293 SDGRFSFWDKDARTKLKTSEQLDQPISACCF----NHNGN-IFAYASSYDWSKGHE 343 (368)
T ss_dssp TTSCEEEEETTTTEEEEECCCCSSCEEEEEE----CTTSS-CEEEEECCCSTTCGG
T ss_pred cCCeEEEEECCCCcEEEEecCCCCCceEEEE----CCCCC-eEEEEeccccccccc
Confidence 9999999999999888888888888777777 89999 888888887665554
No 63
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.5e-33 Score=265.30 Aligned_cols=248 Identities=24% Similarity=0.331 Sum_probs=206.3
Q ss_pred EEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC-ceeeEE--ECCCEEEEE
Q 014003 173 WHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA-EVGSLI--CEGPWVFVG 249 (432)
Q Consensus 173 i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~-~~~~~~--~~~~~l~~~ 249 (432)
+..|+..+. ....++.+|.+.|++++|+|++++|+||+.||+|++||+.+++....+..+. .+.++. +++.+++++
T Consensus 48 ~~~~~~~~~-~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~ 126 (380)
T 3iz6_a 48 AVSFNPTDL-VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACG 126 (380)
T ss_dssp CCCCCCCCC-EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEEC
T ss_pred cccccccee-EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEe
Confidence 445665554 7788999999999999999999999999999999999999999888887543 344433 577777765
Q ss_pred -cCCeEEEEEccCCc--------eEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceee-----
Q 014003 250 -MPNVVKAWHIESSA--------EFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALL----- 312 (432)
Q Consensus 250 -~~~~i~vwd~~~~~--------~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~----- 312 (432)
.|+.+++|++.+.. ...+.+|.+.+.++.+.++ .+++|+.|++|++||+.++.. +..+
T Consensus 127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-----~~~~~~~~~ 201 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-----ISIFGSEFP 201 (380)
T ss_dssp CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-----EEEECCCSS
T ss_pred eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-----EEEeecccC
Confidence 89999999987532 2246788999999999875 799999999999999998753 3333
Q ss_pred eccccCeEEEEEe---CCEEEEEeCCCeEEEEECC-CCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCC
Q 014003 313 KGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLD-TLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEE 386 (432)
Q Consensus 313 ~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~ 386 (432)
.+|...|.+++++ +++|++|+.||+|++||++ ..+++..+.+|...|.++.++ +++|++++.|++|++||++++
T Consensus 202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred CCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence 5789999999995 7899999999999999998 567889999999999999998 689999999999999999998
Q ss_pred CceeEEeeccC-------CcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 387 GNLEVAYTHNE-------DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 387 ~~~~~~~~~~~-------~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+.+..+..+.. .+..+++ +|+|+ +|++|+.||.|++||+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~v~~~~~----s~~g~-~l~~g~~dg~i~vwd~~ 328 (380)
T 3iz6_a 282 HQLQVYNREPDRNDNELPIVTSVAF----SISGR-LLFAGYSNGDCYVWDTL 328 (380)
T ss_dssp EEEEEECCCCSSSCCSSCSCSEEEE----CSSSS-EEEEECTTSCEEEEETT
T ss_pred cEEEEecccccccccccCceEEEEE----CCCCC-EEEEEECCCCEEEEECC
Confidence 87776654332 2445555 89999 99999999999999974
No 64
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.4e-32 Score=287.25 Aligned_cols=278 Identities=18% Similarity=0.226 Sum_probs=226.1
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCC--CceEEeeccC
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLSG 162 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 162 (432)
.+.+|.+.|.+++|+|+|.+||+|+.||+|+||++.++.. ...+..+.. ..+++.+.+.
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-------------------~~~~~~~~~~v~~~~~s~~~~ 68 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-------------------VRSIQVTETPVRAGKFIARKN 68 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------------------EEEEECCSSCEEEEEEEGGGT
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-------------------EEEEecCCCcEEEEEEeCCCC
Confidence 5688999999999999999999999999999998765432 111122222 3456666777
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC-ceeEEEe-CCCceeeEE
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-QSASVIN-LGAEVGSLI 240 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~-~~~~~~~-~~~~~~~~~ 240 (432)
.+++|+.|+.|++|++.++ +.+..+.+|.+.|++++|+|++++|++++.||+|++||++++ .....+. +...+.++.
T Consensus 69 ~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~ 147 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTG-EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147 (814)
T ss_dssp EEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCC-cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEE
Confidence 8999999999999999888 678889999999999999999999999999999999999987 5555555 445666666
Q ss_pred E---CCCEEE-EEcCCeEEEEEccCCceE-ee-cCCcCCEEEEEEcC--C--EEEEEECCCcEEEEECCCCCCCccccce
Q 014003 241 C---EGPWVF-VGMPNVVKAWHIESSAEF-SL-DGPVGEVYSMVVAN--E--MLFAGAQDGNILVWKGIPNTQNPFQLAA 310 (432)
Q Consensus 241 ~---~~~~l~-~~~~~~i~vwd~~~~~~~-~~-~~~~~~v~~l~~~~--~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~ 310 (432)
. ++..++ ++.++.|++||+.++... .. ..+...+.++++++ + .+++++.||.|++||+.++. ...
T Consensus 148 ~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----~~~ 222 (814)
T 3mkq_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-----CVA 222 (814)
T ss_dssp EETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-----EEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----EEE
Confidence 4 344444 558999999999876533 33 34448899999987 5 99999999999999998764 467
Q ss_pred eeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcC--C-EEEEEeCCCcEEEEEcCC
Q 014003 311 LLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD--Q-YLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 311 ~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~s~s~dg~i~iwd~~~ 385 (432)
.+.+|...|.+++|+ ++++++++.||.|++||+.+++.+..+..|...+.++++++ . .+++++.|+.+.+|++..
T Consensus 223 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence 788899999999997 88999999999999999999999999999999999999883 3 245555577789998765
Q ss_pred CC
Q 014003 386 EG 387 (432)
Q Consensus 386 ~~ 387 (432)
..
T Consensus 303 ~~ 304 (814)
T 3mkq_A 303 DE 304 (814)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 65
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=252.45 Aligned_cols=250 Identities=24% Similarity=0.305 Sum_probs=191.6
Q ss_pred eeeeecCCCceEEeeccCceeeCCCCCeEEEEeCCCC-cEEEEEE-ec-ccCcEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 014003 145 RTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFCGEG-FTMLAKL-EG-HKKAVSGIALPLRSDKLYSGSRDGTVQLWDC 221 (432)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~-~~~~~~l-~~-H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~ 221 (432)
+.+..|.....++.+....+++|+.|+.|++|++..+ ......+ .+ |.+.|.+++|+|++++|++|+.|++|++||+
T Consensus 8 ~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~ 87 (330)
T 2hes_X 8 KSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAK 87 (330)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred eeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Confidence 3445566667778777779999999999999999764 3556666 45 9999999999999999999999999999998
Q ss_pred CCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECC
Q 014003 222 HTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGI 299 (432)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~ 299 (432)
+...... . .......+.+|...|.+++|+|+ +|++|+.|++|++||+.
T Consensus 88 ~~~~~~~-~-----------------------------~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~ 137 (330)
T 2hes_X 88 EESADRT-F-----------------------------EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137 (330)
T ss_dssp --------C-----------------------------CCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred ccCcCcc-c-----------------------------cceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence 6432100 0 00001235688999999999988 99999999999999995
Q ss_pred CCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCC--ceEEEecCCCCCcEEEEEcC----CEEEE
Q 014003 300 PNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTL--EAVMTLNGHTDAPMSLLCWD----QYLLS 371 (432)
Q Consensus 300 ~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~--~~~~~~~~~~~~v~~~~~~~----~~l~s 371 (432)
.... ..+.+..+.+|...|.+++|+ +++|++|+.|++|++||.+++ +++..+.+|...|.++.++. .+|++
T Consensus 138 ~~~~-~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 216 (330)
T 2hes_X 138 ESGE-EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCS 216 (330)
T ss_dssp TTCC-CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEE
T ss_pred CCCC-CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEE
Confidence 4321 134567788999999999997 889999999999999998876 68899999999999999983 48999
Q ss_pred EeCCCcEEEEEcCCCC--------ceeEEee-ccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 372 CSLDNTIKVWIMTEEG--------NLEVAYT-HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 372 ~s~dg~i~iwd~~~~~--------~~~~~~~-~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
++.|++|++||+.... ....+.. |...+..+++ ++++ +|++++.||.|++||+.
T Consensus 217 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~----s~~~--~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 217 GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAW----GFNG--LIASVGADGVLAVYEEV 279 (330)
T ss_dssp EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEE----CTTS--CEEEEETTSCEEEEEEE
T ss_pred EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEE----cCCC--EEEEEeCCCEEEEEEcC
Confidence 9999999999997642 1222222 5555555555 6654 68999999999999964
No 66
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.8e-33 Score=268.40 Aligned_cols=281 Identities=16% Similarity=0.141 Sum_probs=224.6
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCC--ceEEeec--
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHWL-- 160 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-- 160 (432)
.+.||++.|.+++|+| .+|++|+.||+|+||++.......+. .....+..+... .+++.+.
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~ 75 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPK-------------DKSYSHFVHKSGLHHVDVLQAIE 75 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGG-------------GGEEEEECCTTCEEEEEEEEEEE
T ss_pred hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCC-------------CcceEEecCCCcEEEEEEecccc
Confidence 5689999999999998 79999999999999998765521110 111222233333 3455555
Q ss_pred --c---CceeeCCCCCeEEEEeCCCCcE----EEEEEecc-----cCcEEEEEec----CCCCE-EEEEeCCCcEEEEeC
Q 014003 161 --S---GNCVKGDECRFWHSWFCGEGFT----MLAKLEGH-----KKAVSGIALP----LRSDK-LYSGSRDGTVQLWDC 221 (432)
Q Consensus 161 --~---~~~~~g~~d~~i~vw~~~~~~~----~~~~l~~H-----~~~V~~l~~~----~~~~~-l~s~s~Dg~v~iWd~ 221 (432)
+ ..+++++.|+.|++|++.++.. .+..+.+| ...|.+++|+ |++++ |++++.||.|++||+
T Consensus 76 ~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 76 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred cCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 6 6899999999999999976521 26778888 5999999999 99999 999999999999999
Q ss_pred CC------CceeE-----EEe--------CCCceeeEE--ECCCEEEEE-cCCeEEEEEccCCceE-eecC---C---cC
Q 014003 222 HT------GQSAS-----VIN--------LGAEVGSLI--CEGPWVFVG-MPNVVKAWHIESSAEF-SLDG---P---VG 272 (432)
Q Consensus 222 ~~------~~~~~-----~~~--------~~~~~~~~~--~~~~~l~~~-~~~~i~vwd~~~~~~~-~~~~---~---~~ 272 (432)
.+ ++.+. .+. +...+.++. +++ +++++ .++.|++||+++++.. .+.. | ..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~ 234 (397)
T 1sq9_A 156 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 234 (397)
T ss_dssp ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred CccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCC
Confidence 98 66555 553 345566655 356 66655 7899999999988765 4455 7 89
Q ss_pred CEEEEEEcCC--EEEEEECC---CcEEEEECCCCCCCccccceeeec-------------cccCeEEEEEe--CCEEEEE
Q 014003 273 EVYSMVVANE--MLFAGAQD---GNILVWKGIPNTQNPFQLAALLKG-------------HTRPVTCLAVG--GKRLYSG 332 (432)
Q Consensus 273 ~v~~l~~~~~--~l~~g~~d---g~i~~wd~~~~~~~~~~~~~~~~~-------------h~~~v~~l~~~--~~~l~sg 332 (432)
.|.+++++++ ++++++.| |.|++||+.+++ .+..+.. |...|.+++|+ +++|+++
T Consensus 235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 309 (397)
T 1sq9_A 235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-----RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 309 (397)
T ss_dssp CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-----EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred ccceEEECCCCCEEEEEecCCCCceEEEEECCCCc-----ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEE
Confidence 9999999987 89999999 999999998764 4666777 99999999997 8999999
Q ss_pred eCCCeEEEEECCCCceEEEec------CC---------------CCCcEEEEEc--C----------CEEEEEeCCCcEE
Q 014003 333 SMDNTIRVWDLDTLEAVMTLN------GH---------------TDAPMSLLCW--D----------QYLLSCSLDNTIK 379 (432)
Q Consensus 333 s~dg~I~vwd~~~~~~~~~~~------~~---------------~~~v~~~~~~--~----------~~l~s~s~dg~i~ 379 (432)
+.||.|++||+++++++..+. +| ...|.+++++ + ++|++++.||.|+
T Consensus 310 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~ 389 (397)
T 1sq9_A 310 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIR 389 (397)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEE
T ss_pred eCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEE
Confidence 999999999999999999999 88 8999999998 3 5999999999999
Q ss_pred EEEcCCC
Q 014003 380 VWIMTEE 386 (432)
Q Consensus 380 iwd~~~~ 386 (432)
+||+.++
T Consensus 390 iw~~~~g 396 (397)
T 1sq9_A 390 WFREAGG 396 (397)
T ss_dssp EEEEEC-
T ss_pred EEEcCCC
Confidence 9999765
No 67
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.7e-31 Score=244.79 Aligned_cols=245 Identities=20% Similarity=0.376 Sum_probs=205.7
Q ss_pred CcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC-CCceeeEE--ECCCEEEE-EcCCeEEE
Q 014003 181 GFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL-GAEVGSLI--CEGPWVFV-GMPNVVKA 256 (432)
Q Consensus 181 ~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~~~~~--~~~~~l~~-~~~~~i~v 256 (432)
......++.+|.+.|++++|+|++++|++++.||+|++||+.+++....+.. ...+.++. +++.++++ +.|+.|++
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 3467788999999999999999999999999999999999999998888764 44566655 46666664 58999999
Q ss_pred EEccCCceE-eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEE
Q 014003 257 WHIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYS 331 (432)
Q Consensus 257 wd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s 331 (432)
||+++++.. .+.+|...|.++.++++ ++++|+.||.|++||+++++ ....+..|..+|.+++|+ +++|++
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----CLKTLPAHSDPVSAVHFNRDGSLIVS 166 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-----EEEEecCCCCcEEEEEEcCCCCEEEE
Confidence 999988754 56789999999999988 99999999999999998764 467788899999999997 889999
Q ss_pred EeCCCeEEEEECCCCceEEEec-CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeee
Q 014003 332 GSMDNTIRVWDLDTLEAVMTLN-GHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLN 408 (432)
Q Consensus 332 gs~dg~I~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (432)
++.||.|++||+++++.+..+. .+...+..+.++ +++|++++.|+.|++||+++++.+..+..|......+.... .
T Consensus 167 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~ 245 (312)
T 4ery_A 167 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF-S 245 (312)
T ss_dssp EETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE-E
T ss_pred EeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE-E
Confidence 9999999999999999888775 455678888887 78999999999999999999988887777765543322211 1
Q ss_pred CCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 409 DPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 409 sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.+++. +|++|+.||.|++||+++
T Consensus 246 ~~~~~-~l~sg~~dg~i~vwd~~~ 268 (312)
T 4ery_A 246 VTGGK-WIVSGSEDNLVYIWNLQT 268 (312)
T ss_dssp CSSSC-EEEECCTTSCEEEEETTT
T ss_pred eCCCc-EEEEECCCCEEEEEECCC
Confidence 35566 999999999999999864
No 68
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=255.61 Aligned_cols=278 Identities=16% Similarity=0.200 Sum_probs=223.3
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCC--CceEEeeccC
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTP--KNVCYHWLSG 162 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 162 (432)
.+.||++.|.+++| +++.+|++|+.||+|+||++.+... ...+..+.. ..+++.+...
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~-------------------~~~~~~~~~~v~~~~~~~~~~ 72 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL-------------------GTVVYTGQGFLNSVCYDSEKE 72 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE-------------------EEEEEECSSCEEEEEEETTTT
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE-------------------EEEeecCCccEEEEEECCCCC
Confidence 67899999999999 9999999999999999998754321 111222222 3556677777
Q ss_pred ceeeCCCCCeEEEEeCCCC--cEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEe-CCCceeeE
Q 014003 163 NCVKGDECRFWHSWFCGEG--FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN-LGAEVGSL 239 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~--~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~~~~ 239 (432)
.+++|+.|+.|++|++... .+.+..+.+|...|.+++| ++++|++++.||+|++|| .++....+. +...+.++
T Consensus 73 ~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~ 148 (313)
T 3odt_A 73 LLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDA 148 (313)
T ss_dssp EEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEE
T ss_pred EEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEE
Confidence 9999999999999998543 3567788999999999999 578999999999999999 566666665 44455554
Q ss_pred E--E-CCCEEE-EEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeec
Q 014003 240 I--C-EGPWVF-VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG 314 (432)
Q Consensus 240 ~--~-~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~ 314 (432)
. + ++..++ ++.++.+++||...........+...+.+++++++ .+++++.||.|++||+++++ .+..+.+
T Consensus 149 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~-----~~~~~~~ 223 (313)
T 3odt_A 149 KVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGD-----VLRTYEG 223 (313)
T ss_dssp EEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCC-----EEEEEEC
T ss_pred EEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchh-----hhhhhhc
Confidence 4 3 566655 55899999999443333233338899999999988 89999999999999998864 5777889
Q ss_pred cccCeEEEEEe-CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceeE
Q 014003 315 HTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEV 391 (432)
Q Consensus 315 h~~~v~~l~~~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~ 391 (432)
|...|++++|+ ...+++++.||.|++||+++++++..+..|...+.++.++ +..+++++.||.|++||+++++....
T Consensus 224 ~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 224 HESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp CSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGCCC-
T ss_pred CCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCceeeh
Confidence 99999999998 3379999999999999999999999999999999999998 33477899999999999988765543
No 69
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.2e-31 Score=250.83 Aligned_cols=276 Identities=14% Similarity=0.207 Sum_probs=212.9
Q ss_pred eeecCCCceEEeec--cC-ceeeCCC---CCeEEEEeCCCCcEEEEEEecccCcEEEEEecCC---CCEEEEEeCCCcEE
Q 014003 147 LERTTPKNVCYHWL--SG-NCVKGDE---CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLR---SDKLYSGSRDGTVQ 217 (432)
Q Consensus 147 ~~~~~~~~~~~~~~--~~-~~~~g~~---d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~---~~~l~s~s~Dg~v~ 217 (432)
...+.....+..|. .. .+++|+. |+.|++|++.++........+|...|.+++|+|+ +++|++++.||+|+
T Consensus 14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 93 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH 93 (357)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence 34455555554444 43 4556766 9999999998875444445589999999999998 69999999999999
Q ss_pred EEeCCCCc-eeEEEe-CCCceeeEE--------ECCCEEEE-EcCCeEEEEEccCCc--eEeecCCcC----CEEEEE--
Q 014003 218 LWDCHTGQ-SASVIN-LGAEVGSLI--------CEGPWVFV-GMPNVVKAWHIESSA--EFSLDGPVG----EVYSMV-- 278 (432)
Q Consensus 218 iWd~~~~~-~~~~~~-~~~~~~~~~--------~~~~~l~~-~~~~~i~vwd~~~~~--~~~~~~~~~----~v~~l~-- 278 (432)
+||+.+++ ....+. +...+.++. +++.++++ +.|+.|++||++++. ...+..+.+ .+.++.
T Consensus 94 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (357)
T 3i2n_A 94 IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFG 173 (357)
T ss_dssp EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEE
T ss_pred EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEE
Confidence 99999987 777776 445566653 45656654 589999999999876 334443333 788888
Q ss_pred --EcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe-----CCEEEEEeCCCeEEEEECCCCceE
Q 014003 279 --VANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-----GKRLYSGSMDNTIRVWDLDTLEAV 349 (432)
Q Consensus 279 --~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-----~~~l~sgs~dg~I~vwd~~~~~~~ 349 (432)
++++ ++++++.||.|++||++++. ......|...|.+++|+ ++++++++.||.|++||+++++++
T Consensus 174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 247 (357)
T 3i2n_A 174 NAYNQEERVVCAGYDNGDIKLFDLRNMA------LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT 247 (357)
T ss_dssp CCCC-CCCEEEEEETTSEEEEEETTTTE------EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT
T ss_pred eccCCCCCEEEEEccCCeEEEEECccCc------eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc
Confidence 4444 99999999999999998864 23346788999999995 589999999999999999987765
Q ss_pred EEec-----CCCCCcEEEEEcC--C-EEEEEeCCCcEEEEEcCCCC-------------------ceeEEeeccCCcceE
Q 014003 350 MTLN-----GHTDAPMSLLCWD--Q-YLLSCSLDNTIKVWIMTEEG-------------------NLEVAYTHNEDHGVL 402 (432)
Q Consensus 350 ~~~~-----~~~~~v~~~~~~~--~-~l~s~s~dg~i~iwd~~~~~-------------------~~~~~~~~~~~~~~~ 402 (432)
..+. +|...|.++.+++ + +|++++.||.|++||++... .+..+..|...+..+
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~ 327 (357)
T 3i2n_A 248 KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL 327 (357)
T ss_dssp TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEE
T ss_pred cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEE
Confidence 5544 8999999999983 4 89999999999999998653 344555677777666
Q ss_pred EEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 403 ALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 403 ~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
++ +|+++.++++++.||.|++||+.+
T Consensus 328 ~~----s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 328 DW----SPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp EE----CSSSTTEEEEEETTSEEEEEEECC
T ss_pred EE----cCCCCeEEEEecCCCcEEEEECCC
Confidence 66 899995555899999999999864
No 70
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=273.94 Aligned_cols=266 Identities=6% Similarity=-0.017 Sum_probs=202.1
Q ss_pred CCCCCCCCCCCCCc---------eecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEee
Q 014003 89 HKKSPPSYNCPKNN---------VRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHW 159 (432)
Q Consensus 89 h~~~v~~~~~s~~g---------~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (432)
+.+.|++++|+|++ ++||+|+.++.. . + ..+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~------~-----~-----------------------------~~~ 171 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD------E-----P-----------------------------LNE 171 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------------------------------------
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC------C-----c-----------------------------cch
Confidence 56789999999887 899999866420 0 0 013
Q ss_pred ccCceeeCCCCCeEEEEeCCCCcE---EEEEEecccCcEEEEEecCC------CCEEEEEeCCCcEEEEeCCCCceeE--
Q 014003 160 LSGNCVKGDECRFWHSWFCGEGFT---MLAKLEGHKKAVSGIALPLR------SDKLYSGSRDGTVQLWDCHTGQSAS-- 228 (432)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~~~~---~~~~l~~H~~~V~~l~~~~~------~~~l~s~s~Dg~v~iWd~~~~~~~~-- 228 (432)
....+++++.|++|++|++.++.. ....+.+|.+.|.+++|+|+ +.+||+++.||+|++||+.+++...
T Consensus 172 ~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~ 251 (524)
T 2j04_B 172 HLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV 251 (524)
T ss_dssp ----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE
T ss_pred hhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc
Confidence 445678999999999999966521 23456788999999999986 5799999999999999998764320
Q ss_pred EEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccc
Q 014003 229 VINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQ 307 (432)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~ 307 (432)
.... ......+.+|...|.+++|+++ .|++|+.||+|++||++++. .
T Consensus 252 ~~~~----------------------------~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~----~ 299 (524)
T 2j04_B 252 FKMC----------------------------EKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPE----V 299 (524)
T ss_dssp EECC----------------------------CSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCS----S
T ss_pred ceee----------------------------cCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCC----C
Confidence 0000 0111235678899999999876 99999999999999998763 2
Q ss_pred cceeeeccccCeEEEE--Ee--C-CEEEEEeCCCeEEEEECCCCceEEEecCCCC--CcEEEEEc--CCEEEEEeCCCcE
Q 014003 308 LAALLKGHTRPVTCLA--VG--G-KRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD--APMSLLCW--DQYLLSCSLDNTI 378 (432)
Q Consensus 308 ~~~~~~~h~~~v~~l~--~~--~-~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~--~v~~~~~~--~~~l~s~s~dg~i 378 (432)
+...+.+|...|.+++ ++ + ++|++|+.|++|+|||+++++++.++.+|.. .+.+++|+ ++.+++++.|++|
T Consensus 300 ~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv 379 (524)
T 2j04_B 300 PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSL 379 (524)
T ss_dssp CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEE
T ss_pred ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcE
Confidence 4566889999999994 44 5 7899999999999999999988777777754 47788888 5789999999999
Q ss_pred EEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 379 KVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 379 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
++||+++...+..+.+|...+..+++ +|+|+ +|++|+.||+|++||+.
T Consensus 380 ~lwd~~~~~~~~~l~gH~~~V~sva~----Sp~g~-~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 380 RAVPSRAAFAVHPLVSRETTITAIGV----SRLHP-MVLAGSADGSLIITNAA 427 (524)
T ss_dssp EEEETTCTTCCEEEEECSSCEEEEEC----CSSCC-BCEEEETTTEEECCBSC
T ss_pred EEEECcccccceeeecCCCceEEEEe----CCCCC-eEEEEECCCEEEEEech
Confidence 99999999888888889888877776 89999 89999999999999974
No 71
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-32 Score=260.07 Aligned_cols=247 Identities=21% Similarity=0.258 Sum_probs=201.5
Q ss_pred CCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCc
Q 014003 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (432)
..+.||++.|.+++|+|+|++||+|+.||+|+||++...
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----------------------------------------- 43 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE----------------------------------------- 43 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-----------------------------------------
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-----------------------------------------
Confidence 467899999999999999999999999999999964311
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCC--CCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLR--SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~--~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~ 241 (432)
..+.+..+.+|...|++++|+++ +++|++++.||+|++||+.+++.....
T Consensus 44 -----------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----------- 95 (379)
T 3jrp_A 44 -----------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA----------- 95 (379)
T ss_dssp -----------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEE-----------
T ss_pred -----------------cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEee-----------
Confidence 11556778899999999999877 999999999999999999887622211
Q ss_pred CCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC----EEEEEECCCcEEEEECCCCCCCccccceeeecccc
Q 014003 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 242 ~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
....|...|.+++++++ ++++++.||.|++||+..... .....+..|..
T Consensus 96 ------------------------~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~ 148 (379)
T 3jrp_A 96 ------------------------VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---TSPIIIDAHAI 148 (379)
T ss_dssp ------------------------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---CCEEEEECCTT
T ss_pred ------------------------eecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---eeeEEecCCCC
Confidence 23567888999999875 899999999999999988743 23445678999
Q ss_pred CeEEEEEe---------------CCEEEEEeCCCeEEEEECCCCc----eEEEecCCCCCcEEEEEc-----CCEEEEEe
Q 014003 318 PVTCLAVG---------------GKRLYSGSMDNTIRVWDLDTLE----AVMTLNGHTDAPMSLLCW-----DQYLLSCS 373 (432)
Q Consensus 318 ~v~~l~~~---------------~~~l~sgs~dg~I~vwd~~~~~----~~~~~~~~~~~v~~~~~~-----~~~l~s~s 373 (432)
.|.+++|+ +.++++++.||.|++||+++++ ++..+.+|...|.+++++ +++|++++
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence 99999996 5789999999999999998764 557788999999999998 46899999
Q ss_pred CCCcEEEEEcCCCCceeE---Ee--eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 374 LDNTIKVWIMTEEGNLEV---AY--THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 374 ~dg~i~iwd~~~~~~~~~---~~--~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.||.|++||+++...... .. .+...+..++ |+|+|+ +|++++.||.|++|++.
T Consensus 229 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~----~s~~g~-~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 229 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS----WSLSGN-VLALSGGDNKVTLWKEN 286 (379)
T ss_dssp TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE----ECSSSC-CEEEEESSSSEEEEEEE
T ss_pred CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEE----EcCCCC-EEEEecCCCcEEEEeCC
Confidence 999999999998753221 11 1444444444 489999 88899999999999974
No 72
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.6e-31 Score=254.02 Aligned_cols=280 Identities=14% Similarity=0.162 Sum_probs=207.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeecc
Q 014003 82 QTLPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (432)
Q Consensus 82 ~~~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (432)
|..++.+|.+.|.+++|+|||++||+|+.|| ++||++.
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~----------------------------------------- 48 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVH----------------------------------------- 48 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSSE-EEEEEET-----------------------------------------
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecC-----------------------------------------
Confidence 3345688999999999999999999998665 5677422
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEE-EEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKL-YSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI 240 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l-~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~ 240 (432)
+. +..... +...+..+++.++++.+ ++++.|++|++||+.+++.+..+.....+.++.
T Consensus 49 ------------------~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~ 107 (355)
T 3vu4_A 49 ------------------PV-AHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLF 107 (355)
T ss_dssp ------------------TE-EEEEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred ------------------Cc-ceeeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEE
Confidence 11 112222 22247778888888877 567888999999999999999999988999999
Q ss_pred ECCCEEEEEcCCeEEEEEccCC-ceEeecCCcCCEEEEEEcCCEEEE--EECCCcEEEEECCCCCC----------Cccc
Q 014003 241 CEGPWVFVGMPNVVKAWHIESS-AEFSLDGPVGEVYSMVVANEMLFA--GAQDGNILVWKGIPNTQ----------NPFQ 307 (432)
Q Consensus 241 ~~~~~l~~~~~~~i~vwd~~~~-~~~~~~~~~~~v~~l~~~~~~l~~--g~~dg~i~~wd~~~~~~----------~~~~ 307 (432)
.....++++.++.|++||+.+. +.+..... ....+++++..+++ |+.||.|++||+.++.. ...+
T Consensus 108 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~ 185 (355)
T 3vu4_A 108 LSREFIVVSYGDVISVFKFGNPWKRITDDIR--FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAIL 185 (355)
T ss_dssp ECSSEEEEEETTEEEEEESSTTCCBSSCCEE--EEEEEEEETTEEEEEESSCTTCEEEEECCC-----------------
T ss_pred EcCCEEEEEEcCEEEEEECCCCceeeEEecc--CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccC
Confidence 8888888889999999999987 43321111 33445556676655 68999999999987541 0011
Q ss_pred c-ceeeeccccCeEEEEEe--CCEEEEEeCCCe-EEEEECCCCceEEEec-C-CCCCcEEEEEc--CCEEEEEeCCCcEE
Q 014003 308 L-AALLKGHTRPVTCLAVG--GKRLYSGSMDNT-IRVWDLDTLEAVMTLN-G-HTDAPMSLLCW--DQYLLSCSLDNTIK 379 (432)
Q Consensus 308 ~-~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~-I~vwd~~~~~~~~~~~-~-~~~~v~~~~~~--~~~l~s~s~dg~i~ 379 (432)
+ ...+.+|..+|++++|+ +++|++|+.||+ |++||+++++++.++. + |...|.+++|+ +++|++++.|++|+
T Consensus 186 p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~ 265 (355)
T 3vu4_A 186 GKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLH 265 (355)
T ss_dssp -CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEE
T ss_pred cccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEE
Confidence 2 67788999999999997 899999999998 9999999999999998 5 99999999998 68999999999999
Q ss_pred EEEcCCCCceeEEe--------------------ec---cCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 380 VWIMTEEGNLEVAY--------------------TH---NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 380 iwd~~~~~~~~~~~--------------------~~---~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+||++......... .. ......+ .|+|+|+ .+++++.||.+++|++.
T Consensus 266 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----a~~~d~~-~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 266 VFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKI----AWISESS-LVVVWPHTRMIETFKVV 335 (355)
T ss_dssp EEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEE----EESSSSE-EEEEETTTTEEEEEEEE
T ss_pred EEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEE----EEeCCCC-EEEEEeCCCeEEEEEEE
Confidence 99998653211100 00 0111233 4589998 89999999999999864
No 73
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.2e-32 Score=255.59 Aligned_cols=271 Identities=12% Similarity=0.098 Sum_probs=220.5
Q ss_pred CCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceee
Q 014003 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVK 166 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (432)
.+|.+.|.+++|+|+|.+|++++.||+|+||++.....
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~------------------------------------------ 45 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK------------------------------------------ 45 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT------------------------------------------
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc------------------------------------------
Confidence 47999999999999999999999999988886443210
Q ss_pred CCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCC-EEEEEeCCCcEEEEeC-CCCceeEEEe--CCCceeeEEEC
Q 014003 167 GDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWDC-HTGQSASVIN--LGAEVGSLICE 242 (432)
Q Consensus 167 g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~-~l~s~s~Dg~v~iWd~-~~~~~~~~~~--~~~~~~~~~~~ 242 (432)
......+.+|...|++++|+|+++ +|++|+.||.|++||+ .+++...... +...+.++...
T Consensus 46 ---------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~ 110 (342)
T 1yfq_A 46 ---------------NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKY 110 (342)
T ss_dssp ---------------EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE
T ss_pred ---------------cccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeC
Confidence 022344558999999999999999 9999999999999999 8887644444 56666666642
Q ss_pred -CCEE-EEEcCCeEEEEEccC---------CceEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCC-CCCCccccce
Q 014003 243 -GPWV-FVGMPNVVKAWHIES---------SAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIP-NTQNPFQLAA 310 (432)
Q Consensus 243 -~~~l-~~~~~~~i~vwd~~~---------~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~~~ 310 (432)
+..+ +++.|+.|++||+++ ++......+...+.+++++++.+++++.|+.|++||++. ... ....
T Consensus 111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~ 187 (342)
T 1yfq_A 111 GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD---NGTI 187 (342)
T ss_dssp TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC---CCEE
T ss_pred CCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccc---ccee
Confidence 4544 456899999999987 665544458899999999999999999999999999988 432 1233
Q ss_pred eeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCC------ceEEEecCCCC---------CcEEEEEc--CCEEE
Q 014003 311 LLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTL------EAVMTLNGHTD---------APMSLLCW--DQYLL 370 (432)
Q Consensus 311 ~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~------~~~~~~~~~~~---------~v~~~~~~--~~~l~ 370 (432)
....|...+.+++|+ ++++++++.||.|++||++.. +....+..|.. .|.++.++ +++|+
T Consensus 188 ~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 267 (342)
T 1yfq_A 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY 267 (342)
T ss_dssp EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE
T ss_pred eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEE
Confidence 445688899999995 689999999999999999887 88888888865 89999997 68999
Q ss_pred EEeCCCcEEEEEcCCCCceeEEeec-cCCcceEEEeeeeCCCCCcEEEEEeCCCe
Q 014003 371 SCSLDNTIKVWIMTEEGNLEVAYTH-NEDHGVLALGGLNDPDGNPVLICSCNDDS 424 (432)
Q Consensus 371 s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~ 424 (432)
+++.||.|++||+.+++.+..+..| ...+..++ |+++ +|++++.||.
T Consensus 268 ~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~------~~~~-~l~s~s~Dg~ 315 (342)
T 1yfq_A 268 TAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA------CSDN-ILCLATSDDT 315 (342)
T ss_dssp EEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE------ECSS-EEEEEEECTH
T ss_pred EecCCceEEEEcCccHhHhhhhhcccCCCceEec------CCCC-eEEEEecCCc
Confidence 9999999999999999888877776 65544333 7888 8999999998
No 74
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.5e-31 Score=249.88 Aligned_cols=244 Identities=21% Similarity=0.300 Sum_probs=198.5
Q ss_pred CcEEEEEEecccC-cEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEE----eCCCceeeEE--ECCCEEEE-EcCC
Q 014003 181 GFTMLAKLEGHKK-AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI----NLGAEVGSLI--CEGPWVFV-GMPN 252 (432)
Q Consensus 181 ~~~~~~~l~~H~~-~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~----~~~~~~~~~~--~~~~~l~~-~~~~ 252 (432)
..+++.++.+|.+ .|.+++|+|++++|++|+.|++|++||++++...... .+...+.++. +++.++++ +.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 3467888999988 9999999999999999999999999999887644322 2445566666 46776665 5899
Q ss_pred eEEEEEccCCc---eEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--
Q 014003 253 VVKAWHIESSA---EFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-- 325 (432)
Q Consensus 253 ~i~vwd~~~~~---~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-- 325 (432)
.+++|++..+. ...+.+|...|.+++|+|+ +|++|+.|+.|++||+..+.. ......+.+|...|.+++|+
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~~p~ 161 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE--YECVSVLNSHTQDVKHVVWHPS 161 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC--EEEEEEECCCCSCEEEEEECSS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC--eEEEEEecCcCCCeEEEEECCC
Confidence 99999998764 3467899999999999988 999999999999999987643 34566788999999999997
Q ss_pred CCEEEEEeCCCeEEEEECCCCc--eEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc-------------
Q 014003 326 GKRLYSGSMDNTIRVWDLDTLE--AVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN------------- 388 (432)
Q Consensus 326 ~~~l~sgs~dg~I~vwd~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~------------- 388 (432)
+++|++|+.|+.|++||.++++ +..++.+|...|.+++|+ +++|++++.|++|++||......
T Consensus 162 ~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~ 241 (345)
T 3fm0_A 162 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241 (345)
T ss_dssp SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence 8899999999999999998875 467899999999999998 78999999999999999743321
Q ss_pred --eeEEee-ccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 389 --LEVAYT-HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 389 --~~~~~~-~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+..+.. |...+..++ |+|++. .|++++.|+.|++|++.
T Consensus 242 ~~~~~~~~~h~~~v~~v~----~~~~~~-~l~s~~~d~~i~vw~~~ 282 (345)
T 3fm0_A 242 KCICTLSGFHSRTIYDIA----WCQLTG-ALATACGDDAIRVFQED 282 (345)
T ss_dssp EEEEEECSSCSSCEEEEE----ECTTTC-CEEEEETTSCEEEEEEC
T ss_pred ceeEEecCCCCCcEEEEE----EecCCC-EEEEEeCCCeEEEEEeC
Confidence 111222 444444444 489998 89999999999999864
No 75
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.3e-33 Score=263.63 Aligned_cols=302 Identities=14% Similarity=0.120 Sum_probs=210.4
Q ss_pred CCCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeec---
Q 014003 84 LPVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWL--- 160 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 160 (432)
..+.||++.|.+++|+|+|++||+|+.||+|+||++....... .....+..+.....|..|.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~ 69 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW---------------ELSDSWRAHDSSIVAIDWASPE 69 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE---------------EEEEEEECCSSCEEEEEECCGG
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc---------------eecceeccCCCcEEEEEEcCCC
Confidence 4568999999999999999999999999999999876543210 0112223344445555543
Q ss_pred -cCceeeCCCCCeEEEEeCCCCc--------EEEEEEecccCcEEEEEecCC--CCEEEEEeCCCcEEEEeCCCCceeEE
Q 014003 161 -SGNCVKGDECRFWHSWFCGEGF--------TMLAKLEGHKKAVSGIALPLR--SDKLYSGSRDGTVQLWDCHTGQSASV 229 (432)
Q Consensus 161 -~~~~~~g~~d~~i~vw~~~~~~--------~~~~~l~~H~~~V~~l~~~~~--~~~l~s~s~Dg~v~iWd~~~~~~~~~ 229 (432)
...+++|+.|+.|++||+.++. +.+..+.+|...|.+++|+|+ +++|++++.||+|++||+.+++.+..
T Consensus 70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 149 (351)
T 3f3f_A 70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS 149 (351)
T ss_dssp GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence 5689999999999999997653 668889999999999999999 99999999999999999998875543
Q ss_pred EeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC-----EEEEEECCCcEEEEECCCCCCC
Q 014003 230 INLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-----MLFAGAQDGNILVWKGIPNTQN 304 (432)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~-----~l~~g~~dg~i~~wd~~~~~~~ 304 (432)
+....... ........+...+.++.++|+ .+++++.++.+.+|+...+.
T Consensus 150 ~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~-- 203 (351)
T 3f3f_A 150 WTLTSEMK------------------------VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK-- 203 (351)
T ss_dssp CEEEEEEE------------------------SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC--
T ss_pred cccccccc------------------------ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc--
Confidence 32111100 001122457778899999863 89999999999888876654
Q ss_pred ccccceeeeccccCeEEEEEe--C----CEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc------CCEEEEE
Q 014003 305 PFQLAALLKGHTRPVTCLAVG--G----KRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW------DQYLLSC 372 (432)
Q Consensus 305 ~~~~~~~~~~h~~~v~~l~~~--~----~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~------~~~l~s~ 372 (432)
......+.+|...|++++|+ + ++|++|+.||.|++||++++........+.......... ......+
T Consensus 204 -~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (351)
T 3f3f_A 204 -LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDS 282 (351)
T ss_dssp -EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------
T ss_pred -eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccc
Confidence 34567788999999999997 4 689999999999999998876655444333332222222 1222333
Q ss_pred eCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 373 SLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 373 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.....+.+|+....+.+..+..|...+..+++ +|+++ +|++++.||.|++||+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~----s~~~~-~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 283 NTEEKAELQSNLQVELLSEHDDHNGEVWSVSW----NLTGT-ILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp --------CCSEEEEEEEEECTTSSCEEEEEE----CSSSC-CEEEEETTSCEEEEEECT
T ss_pred ccceeeeecccccccEEEEEecccccEEEEEE----cCCCC-EEEEecCCCcEEEEecCc
Confidence 44556667776666677777778888777776 89998 899999999999999863
No 76
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-31 Score=254.57 Aligned_cols=268 Identities=21% Similarity=0.346 Sum_probs=221.7
Q ss_pred CceEEeeccC-ceeeCCCCCeEEEEeC----CCCcE-----EEEEEec----------ccCcEEEEEecCCCCEEEEEeC
Q 014003 153 KNVCYHWLSG-NCVKGDECRFWHSWFC----GEGFT-----MLAKLEG----------HKKAVSGIALPLRSDKLYSGSR 212 (432)
Q Consensus 153 ~~~~~~~~~~-~~~~g~~d~~i~vw~~----~~~~~-----~~~~l~~----------H~~~V~~l~~~~~~~~l~s~s~ 212 (432)
..+++.+.+. .+++|+.|+.|++|++ .++.. ....+.. |.+.|++++|+|++++|++++.
T Consensus 49 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 128 (425)
T 1r5m_A 49 VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVE 128 (425)
T ss_dssp SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEET
T ss_pred EEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeC
Confidence 4566677777 8999999999999999 77632 4555554 7889999999999999999999
Q ss_pred CCcEEEEeCCCCceeEEEe-CCCceeeEEE--CCCEEE-EEcCCeEEEEEccCCceEe-ecCCcCC--------------
Q 014003 213 DGTVQLWDCHTGQSASVIN-LGAEVGSLIC--EGPWVF-VGMPNVVKAWHIESSAEFS-LDGPVGE-------------- 273 (432)
Q Consensus 213 Dg~v~iWd~~~~~~~~~~~-~~~~~~~~~~--~~~~l~-~~~~~~i~vwd~~~~~~~~-~~~~~~~-------------- 273 (432)
||.|++|| .+++....+. +...+.++.. ++.+++ ++.++.|++||+.+++... +..+...
T Consensus 129 dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (425)
T 1r5m_A 129 NGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS 207 (425)
T ss_dssp TSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CC
T ss_pred CCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcc
Confidence 99999999 5677777776 4556666664 566555 5589999999999887653 3344444
Q ss_pred -EEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceE
Q 014003 274 -VYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV 349 (432)
Q Consensus 274 -v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~ 349 (432)
+.++.+.++ .+++++.+|.|++||+.++. ....+..|...|.+++|+ +++|++++.||.|++||+++++.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 282 (425)
T 1r5m_A 208 LGVDVEWVDDDKFVIPGPKGAIFVYQITEKT-----PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ 282 (425)
T ss_dssp CBSCCEEEETTEEEEECGGGCEEEEETTCSS-----CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS
T ss_pred eeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc-----eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc
Confidence 888888888 99999999999999998864 466778899999999997 889999999999999999999999
Q ss_pred EEecCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEe
Q 014003 350 MTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLY 428 (432)
Q Consensus 350 ~~~~~~~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iw 428 (432)
..+.+|...+.++.++ +.++++++.|+.|++||+++.+.+..+..|...+..+.+ +|+++ +|++++.||.|++|
T Consensus 283 ~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~----s~~~~-~l~~~~~dg~i~i~ 357 (425)
T 1r5m_A 283 NCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRI----SQDGQ-KYAVAFMDGQVNVY 357 (425)
T ss_dssp EEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEE----CTTSS-EEEEEETTSCEEEE
T ss_pred eEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEE----cCCCC-EEEEEECCCeEEEE
Confidence 9999999999999998 339999999999999999999888888888877776666 89998 99999999999999
Q ss_pred eCC
Q 014003 429 ELP 431 (432)
Q Consensus 429 dl~ 431 (432)
|++
T Consensus 358 ~~~ 360 (425)
T 1r5m_A 358 DLK 360 (425)
T ss_dssp ECH
T ss_pred ECC
Confidence 985
No 77
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=273.01 Aligned_cols=273 Identities=10% Similarity=-0.020 Sum_probs=191.0
Q ss_pred CCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCC--ceEEeec------cCceeeCCC
Q 014003 98 CPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHWL------SGNCVKGDE 169 (432)
Q Consensus 98 ~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~g~~ 169 (432)
.+|+++.+||++.||+|+||++........ ....+..+... .+++.+. ...+++|+.
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~~~---------------~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~ 233 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCV---------------KVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQ 233 (524)
T ss_dssp -------------CEEEEEEEEETTTCCEE---------------EEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEET
T ss_pred cchhhhhhccCCCCceEEEEEccCCCCCce---------------EEEEEEecCCcEEEEEECCCCCCCCCCceEEEEec
Confidence 579999999999999999998765432000 00111222222 3444443 348999999
Q ss_pred CCeEEEEeCCCCc----------EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeE
Q 014003 170 CRFWHSWFCGEGF----------TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSL 239 (432)
Q Consensus 170 d~~i~vw~~~~~~----------~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~ 239 (432)
|++|++||+.++. .+...+.+|...|++++|+++ ..|++|+.||+|++||++++....
T Consensus 234 DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~----------- 301 (524)
T 2j04_B 234 EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPS----------- 301 (524)
T ss_dssp TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCS-----------
T ss_pred CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCce-----------
Confidence 9999999997542 123478899999999999876 489999999999999998653211
Q ss_pred EECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEE--EEcC---CEEEEEECCCcEEEEECCCCCCCccccceeeec
Q 014003 240 ICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSM--VVAN---EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKG 314 (432)
Q Consensus 240 ~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l--~~~~---~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~ 314 (432)
..+..|...|.++ .+++ .+|++|+.|++|++||+++++ ....+.+
T Consensus 302 -------------------------~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~-----~~~~~~~ 351 (524)
T 2j04_B 302 -------------------------FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA-----TTKTTVS 351 (524)
T ss_dssp -------------------------EEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH-----HHCEEEE
T ss_pred -------------------------EEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC-----ccccccc
Confidence 1235788899998 4555 378999999999999998753 3445556
Q ss_pred ccc--CeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc
Q 014003 315 HTR--PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN 388 (432)
Q Consensus 315 h~~--~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~ 388 (432)
|.. .|.+++|+ ++.+++++.|++|++||++++.++.++.+|...|.+++++ +++|++|+.|++|++||+.....
T Consensus 352 ~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~ 431 (524)
T 2j04_B 352 RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLL 431 (524)
T ss_dssp ECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTT
T ss_pred ccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhc
Confidence 653 47889997 7789999999999999999999999999999999999998 68999999999999998643100
Q ss_pred --------------------------------------------eeEEeeccCCcceEEEeeeeCCCCC--cEEEEEeCC
Q 014003 389 --------------------------------------------LEVAYTHNEDHGVLALGGLNDPDGN--PVLICSCND 422 (432)
Q Consensus 389 --------------------------------------------~~~~~~~~~~~~~~~~~~~~sp~g~--~~l~sg~~D 422 (432)
+..+.+|...+..+ .|+|++. .++++|+.|
T Consensus 432 ~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~V----afsp~~~~~~~lAsg~~~ 507 (524)
T 2j04_B 432 HGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCT----KWNETSAGGKCYAFSNSA 507 (524)
T ss_dssp TCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCE----EECCSTTTTTEEEEECTT
T ss_pred cccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEE----ECCCCCCccHHHHhhccC
Confidence 01111223333333 4589852 389999999
Q ss_pred CeEEEeeCC
Q 014003 423 DSVHLYELP 431 (432)
Q Consensus 423 g~I~iwdl~ 431 (432)
|.|+||++.
T Consensus 508 g~vrlw~l~ 516 (524)
T 2j04_B 508 GLLTLEYLS 516 (524)
T ss_dssp SEEEEEECS
T ss_pred ceEEEEEcc
Confidence 999999985
No 78
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2e-30 Score=249.92 Aligned_cols=230 Identities=22% Similarity=0.352 Sum_probs=186.8
Q ss_pred CceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccC------------------cEEEEEecCCCCEEEEEeCCC
Q 014003 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKK------------------AVSGIALPLRSDKLYSGSRDG 214 (432)
Q Consensus 153 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~------------------~V~~l~~~~~~~~l~s~s~Dg 214 (432)
..+++.+.+..+++|+ ++.+++|++.++ +.+..+..|.. .|.+++|+|++++|++|+.|+
T Consensus 68 ~~v~fspdg~~la~g~-~~~v~i~~~~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~ 145 (393)
T 1erj_A 68 CCVKFSNDGEYLATGC-NKTTQVYRVSDG-SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 145 (393)
T ss_dssp CEEEECTTSSEEEEEC-BSCEEEEETTTC-CEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred EEEEECCCCCEEEEEc-CCcEEEEEecCC-CEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCC
Confidence 3555666777888876 789999999887 55666766542 499999999999999999999
Q ss_pred cEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCc
Q 014003 215 TVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGN 292 (432)
Q Consensus 215 ~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~ 292 (432)
+|++||+++++.+..+ .+|...|.+++|+++ .+++++.|++
T Consensus 146 ~i~iwd~~~~~~~~~~-------------------------------------~~h~~~v~~~~~~p~~~~l~s~s~d~~ 188 (393)
T 1erj_A 146 LIRIWDIENRKIVMIL-------------------------------------QGHEQDIYSLDYFPSGDKLVSGSGDRT 188 (393)
T ss_dssp CEEEEETTTTEEEEEE-------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred eEEEEECCCCcEEEEE-------------------------------------ccCCCCEEEEEEcCCCCEEEEecCCCc
Confidence 9999999988765443 578889999999987 9999999999
Q ss_pred EEEEECCCCCCCccccceeeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEe-------cCCCCCcEEE
Q 014003 293 ILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTL-------NGHTDAPMSL 362 (432)
Q Consensus 293 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~-------~~~~~~v~~~ 362 (432)
|++||++++. ....+. +...+.+++++ +++|++|+.||.|++||+++++++..+ .+|...|.++
T Consensus 189 v~iwd~~~~~-----~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v 262 (393)
T 1erj_A 189 VRIWDLRTGQ-----CSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV 262 (393)
T ss_dssp EEEEETTTTE-----EEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred EEEEECCCCe-----eEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEE
Confidence 9999998864 233343 56779999985 789999999999999999999988877 5789999999
Q ss_pred EEc--CCEEEEEeCCCcEEEEEcCCCC------------ceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEe
Q 014003 363 LCW--DQYLLSCSLDNTIKVWIMTEEG------------NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLY 428 (432)
Q Consensus 363 ~~~--~~~l~s~s~dg~i~iwd~~~~~------------~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iw 428 (432)
+++ +++|++++.|+.|++||+++.. ....+.+|...+..+++ +|+++ +|++|+.||.|++|
T Consensus 263 ~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~----~~~~~-~l~sgs~D~~v~iw 337 (393)
T 1erj_A 263 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT----TQNDE-YILSGSKDRGVLFW 337 (393)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEE----CGGGC-EEEEEETTSEEEEE
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEE----CCCCC-EEEEEeCCCeEEEE
Confidence 998 7899999999999999997643 23345566666655555 89998 99999999999999
Q ss_pred eCCC
Q 014003 429 ELPS 432 (432)
Q Consensus 429 dl~s 432 (432)
|+++
T Consensus 338 d~~~ 341 (393)
T 1erj_A 338 DKKS 341 (393)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 9864
No 79
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.4e-30 Score=241.12 Aligned_cols=236 Identities=20% Similarity=0.360 Sum_probs=196.1
Q ss_pred EEEEEEecccCcEEEEEecCCC-CEEEEEeCCCcEEEEeCCCC-----ceeEEEe-CCCceeeEE--ECCCEEE-EEcCC
Q 014003 183 TMLAKLEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTG-----QSASVIN-LGAEVGSLI--CEGPWVF-VGMPN 252 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~-~~l~s~s~Dg~v~iWd~~~~-----~~~~~~~-~~~~~~~~~--~~~~~l~-~~~~~ 252 (432)
.+..+|.+|.+.|++++|+|++ ++|+||+.|++|++||+... ..+..+. +...+.++. +++.+++ ++.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 5567899999999999999865 89999999999999998643 2344554 344555554 4677665 45899
Q ss_pred eEEEEEccCCceE-eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe----
Q 014003 253 VVKAWHIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---- 325 (432)
Q Consensus 253 ~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---- 325 (432)
.|++||+++++.. .+.+|...|.+++++++ ++++|+.|++|++||++.. ....+.+|...|.++.+.
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~------~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ------CLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC------EEEEECCCSSCEEEEEECCC--
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------eEEEEeccCCcEEEEEEccCCC
Confidence 9999999998865 57789999999999988 8999999999999998643 466788999999999985
Q ss_pred ----CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCc
Q 014003 326 ----GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDH 399 (432)
Q Consensus 326 ----~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 399 (432)
+..+++++.|+.|++||+++++....+.+|...|.+++++ +++|++++.||.|++||+.+.+.+..+..+ ..+
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v 240 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEV 240 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCE
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcE
Confidence 3489999999999999999999999999999999999998 789999999999999999998877666543 444
Q ss_pred ceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 400 GVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 400 ~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
..+++ +|++. ++++++. +.+++|++.
T Consensus 241 ~~~~~----sp~~~-~la~~~~-~~i~v~~~~ 266 (319)
T 3frx_A 241 FSLAF----SPNRY-WLAAATA-TGIKVFSLD 266 (319)
T ss_dssp EEEEE----CSSSS-EEEEEET-TEEEEEEET
T ss_pred EEEEE----cCCCC-EEEEEcC-CCcEEEEeC
Confidence 44444 89998 7777765 459999875
No 80
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.9e-31 Score=260.71 Aligned_cols=285 Identities=11% Similarity=0.214 Sum_probs=214.8
Q ss_pred CCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeC
Q 014003 88 NHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKG 167 (432)
Q Consensus 88 gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 167 (432)
.|.+.|.+++|+|+|.+||+|+.||.|+||++.......+..
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~-------------------------------------- 67 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS-------------------------------------- 67 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC--------------------------------------
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc--------------------------------------
Confidence 377899999999999999999999999999876544210000
Q ss_pred CCCCeEEEEeCCCCcEEEEEEeccc------------CcEEEEEecCCC--CEEEEEeCCCcEEEEeCCCCcee------
Q 014003 168 DECRFWHSWFCGEGFTMLAKLEGHK------------KAVSGIALPLRS--DKLYSGSRDGTVQLWDCHTGQSA------ 227 (432)
Q Consensus 168 ~~d~~i~vw~~~~~~~~~~~l~~H~------------~~V~~l~~~~~~--~~l~s~s~Dg~v~iWd~~~~~~~------ 227 (432)
....+....+.+|. +.|++++|+|++ .+|++++.|++|++||+.+++..
T Consensus 68 -----------~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~ 136 (447)
T 3dw8_B 68 -----------RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNL 136 (447)
T ss_dssp -----------CCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSC
T ss_pred -----------ccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecc
Confidence 00124567788898 889999999998 89999999999999999764432
Q ss_pred ---------------------------------EEE--eCCCceeeEE--ECCCEEEEEcCCeEEEEEccC-CceEe---
Q 014003 228 ---------------------------------SVI--NLGAEVGSLI--CEGPWVFVGMPNVVKAWHIES-SAEFS--- 266 (432)
Q Consensus 228 ---------------------------------~~~--~~~~~~~~~~--~~~~~l~~~~~~~i~vwd~~~-~~~~~--- 266 (432)
..+ .+...+.++. +++.+++++.|+.|++||++. .....
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~ 216 (447)
T 3dw8_B 137 KEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVD 216 (447)
T ss_dssp C--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEE
T ss_pred cCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeee
Confidence 122 2344555555 477888888999999999984 33332
Q ss_pred -----ecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeecccc------------CeEEEEEe-
Q 014003 267 -----LDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR------------PVTCLAVG- 325 (432)
Q Consensus 267 -----~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~------------~v~~l~~~- 325 (432)
+..|...|.+++|+|+ ++++|+.||.|++||++++... ......+..|.. .|.+++|+
T Consensus 217 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 295 (447)
T 3dw8_B 217 IKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC-DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH 295 (447)
T ss_dssp CCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS-CTTCEEECCC-----CCHHHHHTTCEEEEEECT
T ss_pred cccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc-cceeeEeccCCCccccccccccCceEEEEEECC
Confidence 5578899999999985 8999999999999999987531 112466777765 89999997
Q ss_pred -CCEEEEEeCCCeEEEEECCC-CceEEEecCCCCCc---------------EEEEEc--CCEEEEEeCCCcEEEEEcCCC
Q 014003 326 -GKRLYSGSMDNTIRVWDLDT-LEAVMTLNGHTDAP---------------MSLLCW--DQYLLSCSLDNTIKVWIMTEE 386 (432)
Q Consensus 326 -~~~l~sgs~dg~I~vwd~~~-~~~~~~~~~~~~~v---------------~~~~~~--~~~l~s~s~dg~i~iwd~~~~ 386 (432)
+++|++++. +.|++||+++ ++++..+.+|...+ ..++++ +++|++++.||.|++||+.++
T Consensus 296 ~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 296 SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred CCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 889999998 9999999997 88999998886422 236666 789999999999999999987
Q ss_pred CceeEEeec---------------------------------cCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 387 GNLEVAYTH---------------------------------NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 387 ~~~~~~~~~---------------------------------~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
+.+. +..+ ...+.. +.|+|++. +|++++.++ +++|.-
T Consensus 375 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~p~~~-~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 375 RDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILH----TAWHPKEN-IIAVATTNN-LYIFQD 444 (447)
T ss_dssp CEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCE----EEECSSSS-EEEEECSSC-EEEEEC
T ss_pred ccee-eeecccccccccccCCccccccCCcccccccccccccCCceeE----EEECCCCC-EEEEEecce-eeeecc
Confidence 6543 2221 122333 34599999 888887765 777764
No 81
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.1e-31 Score=253.84 Aligned_cols=266 Identities=15% Similarity=0.180 Sum_probs=214.6
Q ss_pred CceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEE-e
Q 014003 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI-N 231 (432)
Q Consensus 153 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~-~ 231 (432)
..+++.+.+..+++|+.|+.|++|++.+. +....+..| ..+....|++++++|++|+.||+|++||+++++....+ .
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 137 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIR-DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA 137 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSE-ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEeccc-ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence 46788999999999999999999999765 334445555 44555578999999999999999999999999888776 4
Q ss_pred CCCceeeEEE--CCCEEE-EEcCCeEEEEEccCCce-EeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCc
Q 014003 232 LGAEVGSLIC--EGPWVF-VGMPNVVKAWHIESSAE-FSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNP 305 (432)
Q Consensus 232 ~~~~~~~~~~--~~~~l~-~~~~~~i~vwd~~~~~~-~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~ 305 (432)
+...+.++.. ++.+++ ++.|+.|++||+++++. ..+.+|...|.+++++++ ++++++.||.|++||+++++
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--- 214 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT--- 214 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE---
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc---
Confidence 5667777764 566665 45889999999998764 466789999999999988 89999999999999998864
Q ss_pred cccceeee---ccccCeEEEEE---------------------e--CCEEEEEeCCCeEEEEECCCCceEEEec-CCCCC
Q 014003 306 FQLAALLK---GHTRPVTCLAV---------------------G--GKRLYSGSMDNTIRVWDLDTLEAVMTLN-GHTDA 358 (432)
Q Consensus 306 ~~~~~~~~---~h~~~v~~l~~---------------------~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~-~~~~~ 358 (432)
....+. .|...+.++++ + +++|++|+.||.|++||+++++.+..+. .|...
T Consensus 215 --~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 292 (420)
T 3vl1_A 215 --TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS 292 (420)
T ss_dssp --EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSC
T ss_pred --eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCC
Confidence 344444 35556666665 2 7799999999999999999999887775 47888
Q ss_pred cEEEEEc--CC-EEEEEeCCCcEEEEEcCCCCc-eeEEee-ccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 359 PMSLLCW--DQ-YLLSCSLDNTIKVWIMTEEGN-LEVAYT-HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 359 v~~~~~~--~~-~l~s~s~dg~i~iwd~~~~~~-~~~~~~-~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+.+++++ ++ +|++++.||.|++||+++.+. +..+.. +...+..+. .|+++ +|++++.||.|++|+++
T Consensus 293 v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-----~~~~~-~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 293 CNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY-----FAAGA-LFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE-----EETTE-EEEEETTTEEEEEEEEC
T ss_pred ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE-----eCCCC-EEEEecCCccEEEEecc
Confidence 9999998 44 999999999999999998765 556665 444444443 35777 89999999999999975
No 82
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-31 Score=255.68 Aligned_cols=269 Identities=15% Similarity=0.215 Sum_probs=220.2
Q ss_pred ceEEeeccC-ceeeC----------CCCCeEEEEeCCCCc--EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEe
Q 014003 154 NVCYHWLSG-NCVKG----------DECRFWHSWFCGEGF--TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWD 220 (432)
Q Consensus 154 ~~~~~~~~~-~~~~g----------~~d~~i~vw~~~~~~--~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd 220 (432)
.+++.+.+. .+++| +.|+.|++|++.++. +++..+ .|...|.+++|+|++++|++++.||+|++||
T Consensus 17 ~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~ 95 (416)
T 2pm9_A 17 TFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYS 95 (416)
T ss_dssp BCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEEC
T ss_pred eEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEee
Confidence 344445544 67777 899999999997653 123333 6899999999999999999999999999999
Q ss_pred CCC----CceeEEEe-CCCceeeEEE--C-CCEEEEE-cCCeEEEEEccCCc------eE----eecCCcCCEEEEEEcC
Q 014003 221 CHT----GQSASVIN-LGAEVGSLIC--E-GPWVFVG-MPNVVKAWHIESSA------EF----SLDGPVGEVYSMVVAN 281 (432)
Q Consensus 221 ~~~----~~~~~~~~-~~~~~~~~~~--~-~~~l~~~-~~~~i~vwd~~~~~------~~----~~~~~~~~v~~l~~~~ 281 (432)
+.+ .+....+. +...+.++.. + +.+++++ .|+.|++||+.++. .. ....|...|.++++++
T Consensus 96 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 175 (416)
T 2pm9_A 96 TNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQ 175 (416)
T ss_dssp CSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECS
T ss_pred cccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCC
Confidence 987 34555554 4556666664 3 5566554 78999999999876 22 2357888999999997
Q ss_pred C---EEEEEECCCcEEEEECCCCCCCccccceeeecc------ccCeEEEEEe--C-CEEEEEeCCC---eEEEEECCCC
Q 014003 282 E---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH------TRPVTCLAVG--G-KRLYSGSMDN---TIRVWDLDTL 346 (432)
Q Consensus 282 ~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h------~~~v~~l~~~--~-~~l~sgs~dg---~I~vwd~~~~ 346 (432)
+ ++++++.||.|++||+++++ ....+..| ...|.+++|+ + .++++++.|+ .|++||++++
T Consensus 176 ~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 176 SLAHVFASAGSSNFASIWDLKAKK-----EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp SCTTEEEEESSSSCEEEEETTTTE-----EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred CCCcEEEEEcCCCCEEEEECCCCC-----cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 6 89999999999999998864 34555554 7899999997 3 6899999999 9999999986
Q ss_pred -ceEEEec-CCCCCcEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeC
Q 014003 347 -EAVMTLN-GHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCN 421 (432)
Q Consensus 347 -~~~~~~~-~~~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~ 421 (432)
+++..+. +|...+.++.++ +++|++++.|+.|++||+++.+.+..+..|...+..+++ +|++..+|++++.
T Consensus 251 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~----s~~~~~~l~s~~~ 326 (416)
T 2pm9_A 251 NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKF----APEAPDLFACASF 326 (416)
T ss_dssp TSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEE----CTTCTTEEEECCS
T ss_pred CCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEE----CCCCCCEEEEEec
Confidence 6778888 899999999996 689999999999999999999999999889888888777 8999449999999
Q ss_pred CCeEEEeeCCC
Q 014003 422 DDSVHLYELPS 432 (432)
Q Consensus 422 Dg~I~iwdl~s 432 (432)
||.|++||+++
T Consensus 327 d~~i~iw~~~~ 337 (416)
T 2pm9_A 327 DNKIEVQTLQN 337 (416)
T ss_dssp SSEEEEEESCC
T ss_pred CCcEEEEEccC
Confidence 99999999864
No 83
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.98 E-value=1.4e-29 Score=239.48 Aligned_cols=240 Identities=19% Similarity=0.344 Sum_probs=190.3
Q ss_pred EEEEEEecccCcEEEEEe-----cC-CCCEEEEEeCCCcEEEEeCCCCc-------eeEEEe-CCCceeeEE--ECCCEE
Q 014003 183 TMLAKLEGHKKAVSGIAL-----PL-RSDKLYSGSRDGTVQLWDCHTGQ-------SASVIN-LGAEVGSLI--CEGPWV 246 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~-----~~-~~~~l~s~s~Dg~v~iWd~~~~~-------~~~~~~-~~~~~~~~~--~~~~~l 246 (432)
+....+++|.+.|++++| ++ ++++|+||+.|++|++||+.+.+ ....+. +...+.++. +++.++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 557789999999999999 66 89999999999999999997542 334444 345566655 466666
Q ss_pred E-EEcCCeEEEEEccCCceE-eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEE
Q 014003 247 F-VGMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (432)
Q Consensus 247 ~-~~~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l 322 (432)
+ ++.|+.|++||+++++.. .+.+|...|.+++|+|+ ++++++.|+.|++||+..... .......+|...|.++
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~v~~~ 168 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK---FSSAEKENHSDWVSCV 168 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE---EECCTTTSCSSCEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce---eeeecccCCCceeeee
Confidence 5 558999999999988765 67789999999999988 899999999999999974321 1112234788999999
Q ss_pred EEe--C----------CEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCc
Q 014003 323 AVG--G----------KRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGN 388 (432)
Q Consensus 323 ~~~--~----------~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~ 388 (432)
+|+ + .+|++++.||.|++|| .+.+....+.+|...|.+++++ +++|++++.|+.|++||+.....
T Consensus 169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~ 247 (343)
T 2xzm_R 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY 247 (343)
T ss_dssp EECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS
T ss_pred eeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc
Confidence 997 2 6899999999999999 4567888899999999999998 78999999999999999965544
Q ss_pred eeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 389 LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
......+...+..+++ +|++. +++++ .|+.|++||+.+
T Consensus 248 ~~~~~~~~~~v~~v~~----sp~~~-~la~~-~d~~v~iw~~~~ 285 (343)
T 2xzm_R 248 PQREFDAGSTINQIAF----NPKLQ-WVAVG-TDQGVKIFNLMT 285 (343)
T ss_dssp CSEEEECSSCEEEEEE----CSSSC-EEEEE-ESSCEEEEESSS
T ss_pred cceeecCCCcEEEEEE----CCCCC-EEEEE-CCCCEEEEEeCC
Confidence 4444444455555555 89988 66654 688899999853
No 84
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=1.6e-30 Score=252.81 Aligned_cols=252 Identities=20% Similarity=0.279 Sum_probs=205.6
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.+.+|.+.|++++|+|+|++||+|+.||+|+||++..+.. .+.+..+.....|+.+....+
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~-------------------~~~~~~h~~~v~~~s~~~~~l 202 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-------------------LRNMTSHSARVGSLSWNSYIL 202 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-------------------EEEECCCSSCEEEEEEETTEE
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE-------------------EEEEeCCCCceEEEeeCCCEE
Confidence 4567899999999999999999999999999998765432 122334455677889999999
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCC
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (432)
++|+.|+.+++|+.......+..+.+|...+..+.|+|+++++++++.|+.|++||..+++....
T Consensus 203 ~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~--------------- 267 (420)
T 4gga_A 203 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV--------------- 267 (420)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC---------------
T ss_pred EEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccce---------------
Confidence 99999999999999887788899999999999999999999999999999999999987653210
Q ss_pred EEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEE--EECCCcEEEEECCCCCCCccccceeeeccccCe
Q 014003 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFA--GAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (432)
Q Consensus 245 ~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~--g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v 319 (432)
.......+...|.++++++. .+++ |+.|+.|++||+.++. ....+.. ...+
T Consensus 268 ------------------~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~-----~~~~~~~-~~~v 323 (420)
T 4gga_A 268 ------------------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-----CLSAVDA-HSQV 323 (420)
T ss_dssp ------------------CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE-----EEEEEEC-SSCE
T ss_pred ------------------eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc-----cceeecc-ccce
Confidence 11234577889999999886 5554 4579999999999874 3455554 4567
Q ss_pred EEEEEe--CCEEEEEe--CCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEe
Q 014003 320 TCLAVG--GKRLYSGS--MDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 320 ~~l~~~--~~~l~sgs--~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (432)
.++.|+ ++.+++++ .|+.|+|||+++++++.++.+|...|.+++++ +++|+||+.|++|+|||+.+..+.....
T Consensus 324 ~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 324 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRE 403 (420)
T ss_dssp EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----
T ss_pred eeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhh
Confidence 888886 77777655 79999999999999999999999999999998 7899999999999999998766554443
Q ss_pred e
Q 014003 394 T 394 (432)
Q Consensus 394 ~ 394 (432)
.
T Consensus 404 ~ 404 (420)
T 4gga_A 404 R 404 (420)
T ss_dssp -
T ss_pred h
Confidence 3
No 85
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7e-31 Score=273.69 Aligned_cols=246 Identities=22% Similarity=0.267 Sum_probs=201.9
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.+.||++.|++++|+|+|+++++|+.||+|+||++.++
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~------------------------------------------ 41 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE------------------------------------------ 41 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT------------------------------------------
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC------------------------------------------
Confidence 56899999999999999999999999999999953311
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCC--CCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEEC
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLR--SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICE 242 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~--~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~ 242 (432)
..+.+..+.+|.++|++++|+++ +++|++|+.||+|++||+.+++....
T Consensus 42 ----------------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~------------- 92 (753)
T 3jro_A 42 ----------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI------------- 92 (753)
T ss_dssp ----------------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEE-------------
T ss_pred ----------------CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccc-------------
Confidence 11556778999999999999987 99999999999999999987752221
Q ss_pred CCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC----EEEEEECCCcEEEEECCCCCCCccccceeeeccccC
Q 014003 243 GPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (432)
Q Consensus 243 ~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~----~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~ 318 (432)
.....|...|.++.++|+ .+++|+.||.|++||+..+.. .....+.+|...
T Consensus 93 ----------------------~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~---~~~~~~~~~~~~ 147 (753)
T 3jro_A 93 ----------------------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---TSPIIIDAHAIG 147 (753)
T ss_dssp ----------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC---CCCEEEECCSSC
T ss_pred ----------------------ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC---cceeEeecCCCc
Confidence 123568889999999874 899999999999999988743 234567789999
Q ss_pred eEEEEEe---------------CCEEEEEeCCCeEEEEECCCC----ceEEEecCCCCCcEEEEEc-----CCEEEEEeC
Q 014003 319 VTCLAVG---------------GKRLYSGSMDNTIRVWDLDTL----EAVMTLNGHTDAPMSLLCW-----DQYLLSCSL 374 (432)
Q Consensus 319 v~~l~~~---------------~~~l~sgs~dg~I~vwd~~~~----~~~~~~~~~~~~v~~~~~~-----~~~l~s~s~ 374 (432)
|.+++|+ +.++++|+.||.|++||++++ .+...+.+|...|.++.++ +++|++++.
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence 9999995 478999999999999999887 5677889999999999998 468999999
Q ss_pred CCcEEEEEcCCCCc-----eeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 375 DNTIKVWIMTEEGN-----LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 375 dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
||.|++||+.+... ......+...+..+++ +|+|+ ++++|+.||.|++|++.
T Consensus 228 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~----spdg~-~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 228 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW----SLSGN-VLALSGGDNKVTLWKEN 284 (753)
T ss_dssp SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEE----CTTTC-CEEEECSSSCEECCBCC
T ss_pred CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEE----cCCCC-EEEEEcCCCEEEEEecC
Confidence 99999999998642 2223335666666666 89999 89999999999999986
No 86
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=2.9e-30 Score=240.33 Aligned_cols=245 Identities=20% Similarity=0.270 Sum_probs=202.2
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.+.+|...|.+++|+|+|++||||+.||+|+||+++++.. .+....+.....++.+....+
T Consensus 62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~-------------------~~~~~~h~~~~~~~~~~~~~l 122 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-------------------LRNMTSHSARVGSLSWNSYIL 122 (318)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-------------------EEEEECCSSCEEEEEEETTEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee-------------------EEEecCccceEEEeecCCCEE
Confidence 4567999999999999999999999999999998765432 122334455677888888899
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCC
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGP 244 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (432)
++|+.++.+++|+.......+..+.+|...+..+++++++++|++++.|++|++||+.+++.....
T Consensus 123 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------------- 188 (318)
T 4ggc_A 123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP-------------- 188 (318)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC--------------
T ss_pred EEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc--------------
Confidence 999999999999998887888999999999999999999999999999999999999876532111
Q ss_pred EEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC-----EEEEEECCCcEEEEECCCCCCCccccceeeeccccCe
Q 014003 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-----MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (432)
Q Consensus 245 ~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~-----~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v 319 (432)
......+...|.++.+.+. .+++++.++.|++||..... ......+...+
T Consensus 189 -------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~------~~~~~~~~~~v 243 (318)
T 4ggc_A 189 -------------------LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA------CLSAVDAHSQV 243 (318)
T ss_dssp -------------------SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC------EEEEEECSSCE
T ss_pred -------------------eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc------ccccccceeee
Confidence 1223556778888888776 34567788999999988764 23344567788
Q ss_pred EEEEEe--CCEEEEEe--CCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCC
Q 014003 320 TCLAVG--GKRLYSGS--MDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEG 387 (432)
Q Consensus 320 ~~l~~~--~~~l~sgs--~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~ 387 (432)
..+.+. ++.+++++ .|+.|++||+++++++.++.+|.+.|.+++++ +++|++++.||+|+|||+.+..
T Consensus 244 ~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred eeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 888886 66666554 79999999999999999999999999999998 7899999999999999997653
No 87
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=7.1e-29 Score=233.14 Aligned_cols=239 Identities=19% Similarity=0.370 Sum_probs=194.6
Q ss_pred EEEEEEecccCcEEEEEecCC-CCEEEEEeCCCcEEEEeCCCCc-----eeEEEe-CCCceeeEE--ECCCEEE-EEcCC
Q 014003 183 TMLAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQ-----SASVIN-LGAEVGSLI--CEGPWVF-VGMPN 252 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~-~~~l~s~s~Dg~v~iWd~~~~~-----~~~~~~-~~~~~~~~~--~~~~~l~-~~~~~ 252 (432)
++..+|+||++.|++|+|+|+ +++|+|||.|++|++||+.+.+ +...+. +...+.++. +++.+++ ++.|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 566789999999999999997 6899999999999999997654 233443 345566655 4667666 45899
Q ss_pred eEEEEEccCCceE-eecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe----
Q 014003 253 VVKAWHIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---- 325 (432)
Q Consensus 253 ~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---- 325 (432)
.|++|+....... ....+...+..+.+.++ .+++++.|+.+++||+.... .......+|...+.+++++
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC----KYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE----EEEECSSSCSSCEEEEEECSCSS
T ss_pred cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc----eEEEEeccccCcccceEEccCCC
Confidence 9999999988754 45566677788888776 89999999999999987653 3445567899999999986
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEE
Q 014003 326 GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLA 403 (432)
Q Consensus 326 ~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 403 (432)
..++++++.|+.|++||+++++++..+.+|...|.+++++ +++|++++.|+.|++||+++.+.+..+..+ ..+..+.
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~ 263 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALC 263 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEE
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeee
Confidence 5678999999999999999999999999999999999998 689999999999999999998877666543 3444444
Q ss_pred EeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 404 LGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 404 ~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+ +|++. +++++.|+.|++||+++
T Consensus 264 ~----~~~~~--~~~~~~d~~i~iwd~~~ 286 (340)
T 4aow_A 264 F----SPNRY--WLCAATGPSIKIWDLEG 286 (340)
T ss_dssp E----CSSSS--EEEEEETTEEEEEETTT
T ss_pred c----CCCCc--eeeccCCCEEEEEECCC
Confidence 4 78876 55666799999999863
No 88
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=1.2e-28 Score=259.07 Aligned_cols=277 Identities=19% Similarity=0.234 Sum_probs=231.5
Q ss_pred eeeeecCCC--ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 014003 145 RTLERTTPK--NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH 222 (432)
Q Consensus 145 ~~~~~~~~~--~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~ 222 (432)
+.+..+... .+++++.+..+++|+.||.|++||+.++ +.+..+.+|..+|.+++|+|++++|++++.||+|++||+.
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC-ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 344445544 4455666678999999999999999887 7888999999999999999999999999999999999999
Q ss_pred CCceeEEEe-CCCceeeEE--ECCCEEE-EEcCCeEEEEEccCCce--EeecCCcCCEEEEEEcC-C--EEEEEECCCcE
Q 014003 223 TGQSASVIN-LGAEVGSLI--CEGPWVF-VGMPNVVKAWHIESSAE--FSLDGPVGEVYSMVVAN-E--MLFAGAQDGNI 293 (432)
Q Consensus 223 ~~~~~~~~~-~~~~~~~~~--~~~~~l~-~~~~~~i~vwd~~~~~~--~~~~~~~~~v~~l~~~~-~--~l~~g~~dg~i 293 (432)
+++.+..+. +...+.++. +++.+++ ++.|+.|++||++++.. ....+|...|.+++|+| + .+++++.||.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 999988887 455666666 4666665 45789999999998743 35678999999999998 4 89999999999
Q ss_pred EEEECCCCCCCccccceeeec-cccCeEEEEE----eCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--C
Q 014003 294 LVWKGIPNTQNPFQLAALLKG-HTRPVTCLAV----GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--D 366 (432)
Q Consensus 294 ~~wd~~~~~~~~~~~~~~~~~-h~~~v~~l~~----~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~ 366 (432)
++||+..+.. ...+.. +...+.+++| ++.++++++.||.|++||+++++++..+.+|...+.++.++ +
T Consensus 166 ~vwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 240 (814)
T 3mkq_A 166 KVWSLGQSTP-----NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240 (814)
T ss_dssp EEEETTCSSC-----SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred EEEECCCCcc-----eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence 9999987643 334443 4488999998 47899999999999999999999999999999999999998 6
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 367 QYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 367 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
++|++++.||.|++||+.+.+.+..+..+...+..+++ +|+|..++++++.|+.+.+|++.
T Consensus 241 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 301 (814)
T 3mkq_A 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIAT----HPTGRKNYIASGFDNGFTVLSLG 301 (814)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEE----CTTCGGGEEEEEETTEEEEEECS
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEE----ccCCCceEEEEEeCCCEEEEEcC
Confidence 89999999999999999999888888888777766666 89987654555567778888864
No 89
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=7.5e-30 Score=248.86 Aligned_cols=260 Identities=19% Similarity=0.280 Sum_probs=207.0
Q ss_pred CCCCCCCCCCCCCCCCC-ceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCc
Q 014003 85 PVSNHKKSPPSYNCPKN-NVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN 163 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~-g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (432)
...+|.+.|++++|+|+ +.++|+++.||.|+||++........
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~------------------------------------ 166 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE------------------------------------ 166 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC------------------------------------
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC------------------------------------
Confidence 34679999999999997 78999999999999998654321000
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCC-EEEEEeCCCcEEEEeCCCCceeE-EEeCCCceeeEEE
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWDCHTGQSAS-VINLGAEVGSLIC 241 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~-~l~s~s~Dg~v~iWd~~~~~~~~-~~~~~~~~~~~~~ 241 (432)
......++..+.+|...|.+++|+|++. +|++|+.||+|++||+.++.... .+.
T Consensus 167 --------------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---------- 222 (430)
T 2xyi_A 167 --------------PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID---------- 222 (430)
T ss_dssp --------------TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEE----------
T ss_pred --------------ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceec----------
Confidence 0000134566789999999999999988 99999999999999998743210 000
Q ss_pred CCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccC
Q 014003 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (432)
Q Consensus 242 ~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~ 318 (432)
.......|...|.+++|+++ ++++++.||.|++||+++... .+....+..|...
T Consensus 223 ---------------------~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~ 279 (430)
T 2xyi_A 223 ---------------------AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--SKPSHTVDAHTAE 279 (430)
T ss_dssp ---------------------CSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS--SSCSEEEECCSSC
T ss_pred ---------------------cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC--CcceeEeecCCCC
Confidence 01234578889999999883 899999999999999997642 2356677889999
Q ss_pred eEEEEEe--CC-EEEEEeCCCeEEEEECCC-CceEEEecCCCCCcEEEEEc--C-CEEEEEeCCCcEEEEEcCCC-----
Q 014003 319 VTCLAVG--GK-RLYSGSMDNTIRVWDLDT-LEAVMTLNGHTDAPMSLLCW--D-QYLLSCSLDNTIKVWIMTEE----- 386 (432)
Q Consensus 319 v~~l~~~--~~-~l~sgs~dg~I~vwd~~~-~~~~~~~~~~~~~v~~~~~~--~-~~l~s~s~dg~i~iwd~~~~----- 386 (432)
|++++|+ +. ++++|+.||.|++||+++ .+++..+..|...|.++.++ + .+|++++.|+.|++||+...
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 9999997 44 799999999999999998 56789999999999999998 3 57999999999999999872
Q ss_pred ---------CceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 387 ---------GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 387 ---------~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+.+....+|...+..+.+ +|+++.+|++++.||.|+||++.
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~----~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKISDFSW----NPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCEEEEEE----CSSSTTEEEEEETTSEEEEEEEC
T ss_pred ccccccCCcceEEEcCCCCCCceEEEE----CCCCCCEEEEEECCCCEEEeEcc
Confidence 334444556666666666 89998899999999999999975
No 90
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-29 Score=245.38 Aligned_cols=239 Identities=13% Similarity=0.241 Sum_probs=191.4
Q ss_pred EEEEEE-ecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCC---Cc---eeEEEeCCCceeeEEE--CCCEEE-EEcC
Q 014003 183 TMLAKL-EGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHT---GQ---SASVINLGAEVGSLIC--EGPWVF-VGMP 251 (432)
Q Consensus 183 ~~~~~l-~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~---~~---~~~~~~~~~~~~~~~~--~~~~l~-~~~~ 251 (432)
+++..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+ +. ....+.+...+.++.. ++.+++ ++.|
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCC
Confidence 456677 89999999999999 999999999999999999876 33 4556667788888775 556555 5589
Q ss_pred CeEEEEEcc---CCceEee-----------cC--CcCCEEEEE--EcCC--EEEEEECCCcEEEEECCCCCCCcccccee
Q 014003 252 NVVKAWHIE---SSAEFSL-----------DG--PVGEVYSMV--VANE--MLFAGAQDGNILVWKGIPNTQNPFQLAAL 311 (432)
Q Consensus 252 ~~i~vwd~~---~~~~~~~-----------~~--~~~~v~~l~--~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~ 311 (432)
+.|++||++ .++.... .. +...+.++. ++++ ++++|+.||.|++||+++++ .+..
T Consensus 133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~ 207 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE-----RLQI 207 (437)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC-----EEEE
T ss_pred CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-----eeEE
Confidence 999999995 4433211 11 455666666 3344 99999999999999998864 4666
Q ss_pred eec--cccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEec-CCCCCcEEEEEc------CCEEEEEeCCCcEEE
Q 014003 312 LKG--HTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN-GHTDAPMSLLCW------DQYLLSCSLDNTIKV 380 (432)
Q Consensus 312 ~~~--h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~-~~~~~v~~~~~~------~~~l~s~s~dg~i~i 380 (432)
+.+ |...|++++|+ +++|++|+.||.|++||+++++++.++. .|...|.++.+. +.+|++++.||.|++
T Consensus 208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i 287 (437)
T 3gre_A 208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI 287 (437)
T ss_dssp EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence 776 88999999997 8999999999999999999999999986 788889999665 359999999999999
Q ss_pred EEcCCCCceeEEeeccC--------------------------CcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 381 WIMTEEGNLEVAYTHNE--------------------------DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 381 wd~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
||+++++.+..+..|.. .+..+++ + +++ +|++|+.||.|++||+.+
T Consensus 288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~----~-~~~-~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV----S-NDK-ILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp EETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE----E-TTE-EEEEEGGGTEEEEEETTC
T ss_pred EEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE----C-Cce-EEEecCCCCeEEEEECCC
Confidence 99999887777765432 2334444 5 555 899999999999999864
No 91
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=3.8e-29 Score=258.63 Aligned_cols=242 Identities=21% Similarity=0.323 Sum_probs=198.2
Q ss_pred eeeeecCCCceEEeecc---CceeeCCCCCeEEEEeCCCC----cEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEE
Q 014003 145 RTLERTTPKNVCYHWLS---GNCVKGDECRFWHSWFCGEG----FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQ 217 (432)
Q Consensus 145 ~~~~~~~~~~~~~~~~~---~~~~~g~~d~~i~vw~~~~~----~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~ 217 (432)
..+..|.....|..+.. ..+++|+.|+.|++|++.+. ......+.+|...|.+++|+|++++|+||+.||+|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 34566777777766542 36899999999999999653 245678999999999999999999999999999999
Q ss_pred EEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEE
Q 014003 218 LWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILV 295 (432)
Q Consensus 218 iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~ 295 (432)
+||+.+++....+ .+|...|.+++++++ .+++++.|++|++
T Consensus 456 vwd~~~~~~~~~~-------------------------------------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i 498 (694)
T 3dm0_A 456 LWDLAAGVSTRRF-------------------------------------VGHTKDVLSVAFSLDNRQIVSASRDRTIKL 498 (694)
T ss_dssp EEETTTTEEEEEE-------------------------------------ECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred EEECCCCcceeEE-------------------------------------eCCCCCEEEEEEeCCCCEEEEEeCCCEEEE
Confidence 9999988766544 578889999999988 8999999999999
Q ss_pred EECCCCCCCccccceeeeccccCeEEEEEe----CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEE
Q 014003 296 WKGIPNTQNPFQLAALLKGHTRPVTCLAVG----GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYL 369 (432)
Q Consensus 296 wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l 369 (432)
||...... ........+|...|.+++|+ ...+++++.|++|++||++++++...+.+|...|.+++++ +++|
T Consensus 499 wd~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l 576 (694)
T 3dm0_A 499 WNTLGECK--YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLC 576 (694)
T ss_dssp ECTTSCEE--EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EECCCCcc--eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEE
Confidence 99865421 11222235789999999997 2589999999999999999999999999999999999998 7899
Q ss_pred EEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 370 LSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 370 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
++++.||.|++||+.+++.+..+.. ...+..++ |+|++. +++++ .|+.|++||+++
T Consensus 577 ~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~----~sp~~~-~l~~~-~~~~i~iwd~~~ 632 (694)
T 3dm0_A 577 ASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALC----FSPNRY-WLCAA-TEHGIKIWDLES 632 (694)
T ss_dssp EEEETTSBCEEEETTTTEEEECCBC-SSCEEEEE----ECSSSS-EEEEE-ETTEEEEEETTT
T ss_pred EEEeCCCeEEEEECCCCceEEEecC-CCcEEEEE----EcCCCc-EEEEE-cCCCEEEEECCC
Confidence 9999999999999999876655433 33344444 489987 66655 466799999864
No 92
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.8e-29 Score=243.78 Aligned_cols=279 Identities=18% Similarity=0.208 Sum_probs=215.9
Q ss_pred CCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeee-cCC--CceEEeeccCc
Q 014003 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLER-TTP--KNVCYHWLSGN 163 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~ 163 (432)
.+|.+.+....+++++..+++++.||+|+||++.++.... .... +.. ..+++.+.+..
T Consensus 88 ~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~-------------------~~~~~~~~~v~~v~~s~~~~~ 148 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSA-------------------LAETDESTYVASVKWSHDGSF 148 (401)
T ss_dssp TTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEE-------------------EEECCTTCCEEEEEECTTSSE
T ss_pred CCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeE-------------------eeecCCCCCEEEEEECCCCCE
Confidence 5788887776676666778888899999999876654210 0110 112 24455566678
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCC-CCceeEEEe-CCCceeeEEE
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH-TGQSASVIN-LGAEVGSLIC 241 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~-~~~~~~~~~-~~~~~~~~~~ 241 (432)
+++|+.||.|++||+.++ +.+..+.+|...|.+++| ++++|++++.||+|++||++ .+.....+. +...+.++..
T Consensus 149 l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 225 (401)
T 4aez_A 149 LSVGLGNGLVDIYDVESQ-TKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW 225 (401)
T ss_dssp EEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred EEEECCCCeEEEEECcCC-eEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEE
Confidence 999999999999999887 678889999999999999 56799999999999999998 455555555 4556666664
Q ss_pred --CCCEEEE-EcCCeEEEEEccCCceE-eecCCcCCEEEEEEcCC---EEEEEE--CCCcEEEEECCCCCCCccccceee
Q 014003 242 --EGPWVFV-GMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANE---MLFAGA--QDGNILVWKGIPNTQNPFQLAALL 312 (432)
Q Consensus 242 --~~~~l~~-~~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~g~--~dg~i~~wd~~~~~~~~~~~~~~~ 312 (432)
++.++++ +.|+.|++||++++... .+..|...|.+++++++ ++++++ .|+.|++||+.++. ....+
T Consensus 226 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~-----~~~~~ 300 (401)
T 4aez_A 226 RSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA-----RVNTV 300 (401)
T ss_dssp CTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC-----EEEEE
T ss_pred cCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC-----EEEEE
Confidence 6666665 57899999999988755 56688999999999985 667765 79999999998864 34555
Q ss_pred eccccCeEEEEEe--CCEEEEE--eCCCeEEEEECCCCceEE--EecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 014003 313 KGHTRPVTCLAVG--GKRLYSG--SMDNTIRVWDLDTLEAVM--TLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMT 384 (432)
Q Consensus 313 ~~h~~~v~~l~~~--~~~l~sg--s~dg~I~vwd~~~~~~~~--~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~ 384 (432)
. +...|.+++|+ +++++++ +.||.|++||+++++... .+.+|...|.++.++ +++|++++.||.|++||+.
T Consensus 301 ~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 301 D-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp E-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred e-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 4 66789999997 8888884 489999999999965544 467999999999998 7899999999999999999
Q ss_pred CCCceeEEe
Q 014003 385 EEGNLEVAY 393 (432)
Q Consensus 385 ~~~~~~~~~ 393 (432)
+++.+....
T Consensus 380 ~~~~~~~~~ 388 (401)
T 4aez_A 380 DGDHVKRPI 388 (401)
T ss_dssp C--------
T ss_pred CCccccccc
Confidence 887765543
No 93
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1e-29 Score=245.59 Aligned_cols=277 Identities=18% Similarity=0.202 Sum_probs=210.6
Q ss_pred CCCCCCCCCcee-cCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCce--EEee-ccCceeeCC
Q 014003 93 PPSYNCPKNNVR-VSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNV--CYHW-LSGNCVKGD 168 (432)
Q Consensus 93 v~~~~~s~~g~~-las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~ 168 (432)
...++++|+... +++++.||.|+||++...+..... ...+..|..... ++.+ ....+++|+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~---------------~~~~~~h~~~V~~~~~~p~~~~~l~s~s 101 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKN---------------VPLVCGHTAPVLDIAWCPHNDNVIASGS 101 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTT---------------CCCBCCCSSCEEEEEECTTCTTEEEEEE
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCC---------------CceEecCCCCEEEEEeCCCCCCEEEEEe
Confidence 355777887765 567888999999987654321111 111222333344 4444 556899999
Q ss_pred CCCeEEEEeCCCCc------EEEEEEecccCcEEEEEecCCC-CEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE
Q 014003 169 ECRFWHSWFCGEGF------TMLAKLEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (432)
Q Consensus 169 ~d~~i~vw~~~~~~------~~~~~l~~H~~~V~~l~~~~~~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~ 241 (432)
.|+.|++|++.++. +++..+.+|...|.+++|+|++ ++|++++.||+|++||+++++.+..+.
T Consensus 102 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------- 171 (402)
T 2aq5_A 102 EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG---------- 171 (402)
T ss_dssp TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC----------
T ss_pred CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe----------
Confidence 99999999997752 4577889999999999999998 699999999999999999887665441
Q ss_pred CCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceee-eccccC
Q 014003 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALL-KGHTRP 318 (432)
Q Consensus 242 ~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~-~~h~~~ 318 (432)
...|...|.+++|+++ ++++++.||.|++||++++. .+..+ ..|...
T Consensus 172 -------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~ 221 (402)
T 2aq5_A 172 -------------------------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT-----VVAEKDRPHEGT 221 (402)
T ss_dssp -------------------------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----EEEEEECSSCSS
T ss_pred -------------------------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc-----eeeeeccCCCCC
Confidence 1457888999999987 89999999999999998864 35555 677765
Q ss_pred -eEEEEEe--CCEEEEE---eCCCeEEEEECCCCce-EEEe-cCCCCCcEEEEEc--CCEEE-EEeCCCcEEEEEcCCCC
Q 014003 319 -VTCLAVG--GKRLYSG---SMDNTIRVWDLDTLEA-VMTL-NGHTDAPMSLLCW--DQYLL-SCSLDNTIKVWIMTEEG 387 (432)
Q Consensus 319 -v~~l~~~--~~~l~sg---s~dg~I~vwd~~~~~~-~~~~-~~~~~~v~~~~~~--~~~l~-s~s~dg~i~iwd~~~~~ 387 (432)
+.++.|+ +.+|++| +.|+.|++||+++++. +... ..|...+.++.++ +++|+ +++.||.|++||+.+++
T Consensus 222 ~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 222 RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp SCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred cceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 8889997 7788888 7999999999998764 3333 2567788999888 56775 55579999999999887
Q ss_pred c-eeEEeec--cCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 388 N-LEVAYTH--NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 388 ~-~~~~~~~--~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
. +..+..+ ...+..+++ +|++. ++++ .++.+++|++.
T Consensus 302 ~~~~~l~~~~~~~~v~~~~~----sp~~~-~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 302 PFLHYLSMFSSKESQRGMGY----MPKRG-LEVN--KCEIARFYKLH 341 (402)
T ss_dssp TCEEEEEEECCSSCCSEEEE----CCGGG-SCGG--GTEEEEEEEEE
T ss_pred cceEeecccccCCcccceEE----ecccc-ccee--cceeEEEEEcC
Confidence 5 5555444 466777776 89998 5553 57799999975
No 94
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.6e-29 Score=237.44 Aligned_cols=262 Identities=11% Similarity=0.095 Sum_probs=189.6
Q ss_pred CCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCCCCeE
Q 014003 94 PSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFW 173 (432)
Q Consensus 94 ~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 173 (432)
....+.+++.++++|+.||+|++||+.++.... .+.......+++++. +++|+.|+.|
T Consensus 40 ~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~-------------------~~~~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 40 LNKSMYYDKWVCMCRCEDGALHFTQLKDSKTIT-------------------TITTPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp ECSSSSEEEEEEEEEEETTEEEEEEESSSSCEE-------------------EEEEECCCTTCCCCS---EEEECSTTEE
T ss_pred hhhhhcCCCCEEEEECCCCcEEEEECCCCcEEE-------------------EEecCCceeeeeCCc---eEEecCCCeE
Confidence 445677899999999999999999987654310 000111123333333 9999999999
Q ss_pred EEEeCC---------CCcEEEEEE-ecccCcEEEEEecC--CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE
Q 014003 174 HSWFCG---------EGFTMLAKL-EGHKKAVSGIALPL--RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC 241 (432)
Q Consensus 174 ~vw~~~---------~~~~~~~~l-~~H~~~V~~l~~~~--~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~ 241 (432)
++|+.. ++ +.+..+ .+|.+.|.+++|+| ++++|++++.||+|++||+++++......
T Consensus 98 ~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---------- 166 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTN-KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS---------- 166 (343)
T ss_dssp EEEETTTEEEEEETTTC-CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC----------
T ss_pred EEEEccCceEEeecCCc-ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe----------
Confidence 999775 33 223333 37889999999999 99999999999999999999888754332
Q ss_pred CCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeec-cccC
Q 014003 242 EGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG-HTRP 318 (432)
Q Consensus 242 ~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~-h~~~ 318 (432)
..+...+.+++++|+ ++++|+.||.|++||++++.. ....+.. |..+
T Consensus 167 --------------------------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~----~~~~~~~~h~~~ 216 (343)
T 3lrv_A 167 --------------------------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ----ASSRFPVDEEAK 216 (343)
T ss_dssp --------------------------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTS----CCEECCCCTTSC
T ss_pred --------------------------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC----CccEEeccCCCC
Confidence 234456889999988 899999999999999998753 2256676 9999
Q ss_pred eEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecC---CCCCcE--EEEEc--CCEEEEEeC-CCcEEEEEcCCCCc
Q 014003 319 VTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNG---HTDAPM--SLLCW--DQYLLSCSL-DNTIKVWIMTEEGN 388 (432)
Q Consensus 319 v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~---~~~~v~--~~~~~--~~~l~s~s~-dg~i~iwd~~~~~~ 388 (432)
|++++|+ +.+|++++ |+.|++||+++++.+..+.. |...+. +++++ +++|++++. |+.|++|++.....
T Consensus 217 v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 217 IKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp EEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 9999997 88999999 55999999999887766554 333333 47776 789999998 99999999976654
Q ss_pred eeEEeeccCCcceEEEeeeeCC---CCCcEEEEEeCCCeEEEe
Q 014003 389 LEVAYTHNEDHGVLALGGLNDP---DGNPVLICSCNDDSVHLY 428 (432)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~sp---~g~~~l~sg~~Dg~I~iw 428 (432)
.... .++ ....|+| ++. .+++++.||.+.++
T Consensus 296 ~~~~----~~~----~~~~~~~~~~~~~-~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 296 NWTK----DEE----SALCLQSDTADFT-DMDVVCGDGGIAAI 329 (343)
T ss_dssp SEEE----EEE----EECCC----CCCC-EEEEEEETTEEEEE
T ss_pred ceEe----cCc----eeEecCccccccc-eeEEEecCCceEEE
Confidence 3332 111 1222345 555 66777777777765
No 95
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.6e-30 Score=247.04 Aligned_cols=236 Identities=10% Similarity=0.014 Sum_probs=189.7
Q ss_pred CCceEEeeccCceeeCCCCCeEEEEeCCCCc-EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEE
Q 014003 152 PKNVCYHWLSGNCVKGDECRFWHSWFCGEGF-TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI 230 (432)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~ 230 (432)
...+++.+.+..+++|+.|+.|++|++.++. +.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++...
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~-- 91 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWK-- 91 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCC--
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCcee--
Confidence 3567777878899999999999999998764 6777889999999999999999999999999999999998765100
Q ss_pred eCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCcccc
Q 014003 231 NLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQL 308 (432)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~ 308 (432)
.......|...|.+++|+++ ++++++.|+.|++||+..+.. ...
T Consensus 92 --------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~ 137 (377)
T 3dwl_C 92 --------------------------------QTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND--WWV 137 (377)
T ss_dssp --------------------------------CEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-------CCC
T ss_pred --------------------------------eeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc--cee
Confidence 11234578889999999987 899999999999999988753 234
Q ss_pred ceeeec-cccCeEEEEEe--CCEEEEEeCCCeEEEEECC------------------CCceEEEecCCCCCcEEEEEc--
Q 014003 309 AALLKG-HTRPVTCLAVG--GKRLYSGSMDNTIRVWDLD------------------TLEAVMTLNGHTDAPMSLLCW-- 365 (432)
Q Consensus 309 ~~~~~~-h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~------------------~~~~~~~~~~~~~~v~~~~~~-- 365 (432)
...+.. |...|.+++|+ +++|++++.||.|++||++ .++++..+ +|...|.+++++
T Consensus 138 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~ 216 (377)
T 3dwl_C 138 SKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPS 216 (377)
T ss_dssp CEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTT
T ss_pred eeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCC
Confidence 566777 99999999997 8899999999999999985 35677777 899999999998
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCc----eeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 366 DQYLLSCSLDNTIKVWIMTEEGN----LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 366 ~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
+++|++++.|+.|++||+.+.+. +..+..|...+..+++ +|+|+ +|++|+.|+.+ +|+.
T Consensus 217 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~----s~~~~-~l~~~~~~~~~-~~~~ 279 (377)
T 3dwl_C 217 GNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLW----ANESA-IVAAGYNYSPI-LLQG 279 (377)
T ss_dssp SSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEE----EETTE-EEEEESSSSEE-EECC
T ss_pred CCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEE----cCCCC-EEEEEcCCcEE-EEEe
Confidence 68999999999999999999887 6777778877777666 79998 88888766666 6654
No 96
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=5.8e-30 Score=244.17 Aligned_cols=256 Identities=13% Similarity=0.111 Sum_probs=192.4
Q ss_pred CCCCCCCCCCCCCCCCC---------CceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCc
Q 014003 84 LPVSNHKKSPPSYNCPK---------NNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKN 154 (432)
Q Consensus 84 ~~~~gh~~~v~~~~~s~---------~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (432)
..|.+|.+.|.+++++. ++..|++++.|+++|+|++.................... . +.....
T Consensus 67 ~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~ 138 (365)
T 4h5i_A 67 FALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTN--A------DDYTKL 138 (365)
T ss_dssp EECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCC--T------TCCEEE
T ss_pred EEccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCC--c------ccCEEE
Confidence 35778999988887754 356677888899999998765432111111100000000 0 001135
Q ss_pred eEEeeccCce--eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC
Q 014003 155 VCYHWLSGNC--VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (432)
Q Consensus 155 ~~~~~~~~~~--~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 232 (432)
+++.+.+..+ ++|+.|++|++||+.++ +.+..+. |...|.+++|+|+|++|++++.| .+++|+..+++.....
T Consensus 139 v~fSpDg~~la~as~~~d~~i~iwd~~~~-~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~-- 213 (365)
T 4h5i_A 139 VYISREGTVAAIASSKVPAIMRIIDPSDL-TEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARK-- 213 (365)
T ss_dssp EEECTTSSCEEEEESCSSCEEEEEETTTT-EEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEE--
T ss_pred EEEcCCCCEEEEEECCCCCEEEEeECCCC-cEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeee--
Confidence 7888888865 46778999999999987 6666665 78899999999999999999855 5677777766654332
Q ss_pred CCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCC----cEEEEECCCCCCCcc
Q 014003 233 GAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDG----NILVWKGIPNTQNPF 306 (432)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg----~i~~wd~~~~~~~~~ 306 (432)
....|...|.+++|+|+ .+++++.|+ .+++||+...... .
T Consensus 214 ---------------------------------~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~-~ 259 (365)
T 4h5i_A 214 ---------------------------------TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS-V 259 (365)
T ss_dssp ---------------------------------CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE-E
T ss_pred ---------------------------------ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec-c
Confidence 12456778899999988 888888777 6888988765421 1
Q ss_pred ccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEe-cCCCCCcEEEEEc--CCEEEEEeCCCcEEEE
Q 014003 307 QLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTL-NGHTDAPMSLLCW--DQYLLSCSLDNTIKVW 381 (432)
Q Consensus 307 ~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~s~s~dg~i~iw 381 (432)
.....+.+|..+|++++|+ +++||+|+.|++|+|||+++++++.++ .+|...|++++|+ +++|+++|.|++|+||
T Consensus 260 ~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw 339 (365)
T 4h5i_A 260 LRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHII 339 (365)
T ss_dssp EEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred eeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 2245577899999999997 999999999999999999999999885 7899999999998 7899999999999999
Q ss_pred EcCCC
Q 014003 382 IMTEE 386 (432)
Q Consensus 382 d~~~~ 386 (432)
|+...
T Consensus 340 ~ip~~ 344 (365)
T 4h5i_A 340 KLPLN 344 (365)
T ss_dssp ECCTT
T ss_pred EcCCC
Confidence 99654
No 97
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=1.6e-28 Score=227.34 Aligned_cols=203 Identities=16% Similarity=0.267 Sum_probs=169.8
Q ss_pred EEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC--ceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCC
Q 014003 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG--QSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESS 262 (432)
Q Consensus 185 ~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~ 262 (432)
+..+.+|.+.|++++|+|+|++|++|+.|++|++||+..+ +.+.
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~---------------------------------- 47 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLID---------------------------------- 47 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCE----------------------------------
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEE----------------------------------
Confidence 3467899999999999999999999999999999998743 2222
Q ss_pred ceEeecCCcCCEEEEEEcC----CEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe----CCEEEEEeC
Q 014003 263 AEFSLDGPVGEVYSMVVAN----EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG----GKRLYSGSM 334 (432)
Q Consensus 263 ~~~~~~~~~~~v~~l~~~~----~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~sgs~ 334 (432)
.+.+|...|.+++|++ ++|++|+.|++|++||+.++. ......+.+|...|.+++|+ +.+|++++.
T Consensus 48 ---~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~---~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~ 121 (297)
T 2pm7_B 48 ---TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR---WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS 121 (297)
T ss_dssp ---EECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC---BCCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred ---EEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc---eEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC
Confidence 3468999999999964 389999999999999998764 23456677899999999996 679999999
Q ss_pred CCeEEEEECCCCc--eEEEecCCCCCcEEEEEcC---------------CEEEEEeCCCcEEEEEcCCCC----ceeEEe
Q 014003 335 DNTIRVWDLDTLE--AVMTLNGHTDAPMSLLCWD---------------QYLLSCSLDNTIKVWIMTEEG----NLEVAY 393 (432)
Q Consensus 335 dg~I~vwd~~~~~--~~~~~~~~~~~v~~~~~~~---------------~~l~s~s~dg~i~iwd~~~~~----~~~~~~ 393 (432)
||.|++||++++. ....+.+|...|.++.++. ++|++++.|++|++||+++.+ ....+.
T Consensus 122 d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~ 201 (297)
T 2pm7_B 122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 201 (297)
T ss_dssp TSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred CCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec
Confidence 9999999998764 2467789999999999873 489999999999999998766 344566
Q ss_pred eccCCcceEEEeeeeCCCC--CcEEEEEeCCCeEEEeeCC
Q 014003 394 THNEDHGVLALGGLNDPDG--NPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 394 ~~~~~~~~~~~~~~~sp~g--~~~l~sg~~Dg~I~iwdl~ 431 (432)
+|...+..++| +|++ ..+|++++.|++|+|||++
T Consensus 202 ~H~~~V~~v~~----sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 202 GHSDWVRDVAW----SPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp CCSSCEEEEEE----CCCCSSSEEEEEEETTSCEEEEEES
T ss_pred CCCCceEEEEE----CCCCCCceEEEEEECCCcEEEEEeC
Confidence 78777777766 8985 3489999999999999975
No 98
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=3.4e-28 Score=233.11 Aligned_cols=240 Identities=16% Similarity=0.192 Sum_probs=196.0
Q ss_pred EEEEEEecccCcEEEEEecCCC-CEEEEEeCCCcEEEEeCCCCceeEEEe---CCCceeeEEE---CCCEEE-EEcCCeE
Q 014003 183 TMLAKLEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSASVIN---LGAEVGSLIC---EGPWVF-VGMPNVV 254 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~---~~~~~~~~~~---~~~~l~-~~~~~~i 254 (432)
+....+.+|...|++++|+|++ ++|++|+.||+|++||+.+++....+. +...+.++.. ++.+++ ++.|+.|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 6778899999999999999999 999999999999999999998888776 5566777664 334554 5589999
Q ss_pred EEEEccCCceEeecCC---cCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CC
Q 014003 255 KAWHIESSAEFSLDGP---VGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GK 327 (432)
Q Consensus 255 ~vwd~~~~~~~~~~~~---~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~ 327 (432)
++||++.........+ ...|.+++++++ ++++|+.||.|++||++. +.+..+.+|...|.+++|+ ++
T Consensus 144 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~h~~~v~~~~~~~~~~ 217 (383)
T 3ei3_B 144 TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG------HEIFKEKLHKAKVTHAEFNPRCD 217 (383)
T ss_dssp EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS------CEEEEEECSSSCEEEEEECSSCT
T ss_pred EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC------CEEEEeccCCCcEEEEEECCCCC
Confidence 9999998665555443 478999999988 999999999999999843 2567788999999999998 55
Q ss_pred -EEEEEeCCCeEEEEECCC----CceEEEecCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCC-
Q 014003 328 -RLYSGSMDNTIRVWDLDT----LEAVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNED- 398 (432)
Q Consensus 328 -~l~sgs~dg~I~vwd~~~----~~~~~~~~~~~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~- 398 (432)
++++++.|+.|++||+++ ++++..+ +|...+.++.++ +++|++++.|+.|++||+++.+.+..+..|...
T Consensus 218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 296 (383)
T 3ei3_B 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQ 296 (383)
T ss_dssp TEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCC
T ss_pred CEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccc
Confidence 899999999999999998 6677777 699999999997 489999999999999999998887777655321
Q ss_pred ------cce------EEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 399 ------HGV------LALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 399 ------~~~------~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+.. -.+...++|+|+ + +|+.||.|++||+.+
T Consensus 297 ~~~~~~~~~~~~p~~~~~~~~~s~dg~-~--s~s~d~~i~iwd~~~ 339 (383)
T 3ei3_B 297 FQHLTPIKATWHPMYDLIVAGRYPDDQ-L--LLNDKRTIDIYDANS 339 (383)
T ss_dssp CTTSCCCCCEECSSSSEEEEECBCCTT-T--CTTCCCCEEEEETTT
T ss_pred cccccceEEeccCCCCceEEEecCCcc-c--ccCCCCeEEEEecCC
Confidence 111 011233467777 3 778999999999864
No 99
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-29 Score=247.61 Aligned_cols=270 Identities=9% Similarity=0.012 Sum_probs=197.4
Q ss_pred CCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCC
Q 014003 89 HKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGD 168 (432)
Q Consensus 89 h~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 168 (432)
-++.|.+++|||||+++||+|.|++|+ +...+.. +. + +......+++.|.+
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~-------l~---g----------h~~~v~~V~FsPdg------- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD-------IN---C----------NSKNLFHVKEFPLE------- 64 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC-------CS---S----------BGGGTEEEEEECCC-------
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccce-------ec---C----------CCccEEEEEECCCC-------
Confidence 457899999999999999999999999 4222211 00 0 01111345566654
Q ss_pred CCCeEEEEeCCCCcEEEEEEe-cccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEE
Q 014003 169 ECRFWHSWFCGEGFTMLAKLE-GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVF 247 (432)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~l~-~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (432)
.++.+.+|+.+.. ..+. .|+..|.+++|+|+|++||+++.||+|++||.++ ++..+. +..
T Consensus 65 ~~~~~~~~~~~~~----~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~------------ 125 (588)
T 2j04_A 65 FENKLDFELAQQN----GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG------------ 125 (588)
T ss_dssp CCCTTTTSCCCSS----CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSS------------
T ss_pred CcceEEEEeCCCc----eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCC------------
Confidence 4555556654322 1222 5689999999999999999999999999999643 222211 000
Q ss_pred EEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCcc--ccceee----eccccCe
Q 014003 248 VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPF--QLAALL----KGHTRPV 319 (432)
Q Consensus 248 ~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~--~~~~~~----~~h~~~v 319 (432)
.-....+.+++|+|+ +|++|+.||+|++||+.++..... -.+..+ .+|...|
T Consensus 126 --------------------~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V 185 (588)
T 2j04_A 126 --------------------NLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWV 185 (588)
T ss_dssp --------------------CSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCE
T ss_pred --------------------ccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccE
Confidence 001235899999999 999999999999999988642111 124554 6788899
Q ss_pred EEEEEeCCEEEEEeCCCeEEEEECCCCce---EEEe-cCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeec
Q 014003 320 TCLAVGGKRLYSGSMDNTIRVWDLDTLEA---VMTL-NGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTH 395 (432)
Q Consensus 320 ~~l~~~~~~l~sgs~dg~I~vwd~~~~~~---~~~~-~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 395 (432)
.+++|+.+-+++++.|+.|++||+.+++. .+++ .+|...|.+++|+++.|++++ +++|++||+.+.+......+|
T Consensus 186 ~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~gh 264 (588)
T 2j04_A 186 THIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKTGS 264 (588)
T ss_dssp EEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEEEECSC
T ss_pred EEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEEEEcCC
Confidence 99999822299999999999999998773 4567 478899999999988999997 699999999887664444478
Q ss_pred cCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 396 NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 396 ~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
...+..+++- .+|++. .++++++||+ ++|.+.
T Consensus 265 ~~~V~~va~~--~s~d~~-~La~a~edG~-klw~~d 296 (588)
T 2j04_A 265 LENFHIIPLN--HEKEST-ILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CSCCCEEEET--TCSSCE-EEEECSSCEE-EEEESS
T ss_pred CceEEEEEee--eCCCCC-EEEEEcCCCC-EEEeec
Confidence 8777776550 168887 8999999999 999864
No 100
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=2.3e-28 Score=232.64 Aligned_cols=236 Identities=10% Similarity=0.037 Sum_probs=200.3
Q ss_pred EecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc--eeEEEe-CCCceeeEE--ECCCEEEE-EcCCeEEEEEccC
Q 014003 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ--SASVIN-LGAEVGSLI--CEGPWVFV-GMPNVVKAWHIES 261 (432)
Q Consensus 188 l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~--~~~~~~-~~~~~~~~~--~~~~~l~~-~~~~~i~vwd~~~ 261 (432)
+..|.++|++++|+|++++|++++.|+.|++||+.+++ ....+. +...+.++. +++.++++ +.|+.|++||+++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45699999999999999999999999999999999887 666665 455666665 46776665 5789999999988
Q ss_pred Cc---eEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCcccc-ceeeeccccCeEEEEEe--CCEEEEEe
Q 014003 262 SA---EFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQL-AALLKGHTRPVTCLAVG--GKRLYSGS 333 (432)
Q Consensus 262 ~~---~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~-~~~~~~h~~~v~~l~~~--~~~l~sgs 333 (432)
++ ......+...|.++.++++ ++++++.||.|++||+..... ... ......|...|.+++|+ +++|++++
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND--WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT--EEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc--ceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 87 3345778899999999988 999999999999999988653 112 23335788999999997 88999999
Q ss_pred CCCeEEEEEC------------------CCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEe
Q 014003 334 MDNTIRVWDL------------------DTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 334 ~dg~I~vwd~------------------~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (432)
.||.|++||+ .+++++..+.+|...+.++.++ +++|++++.|+.|++||+++.+.+..+.
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 241 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 241 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc
Confidence 9999999995 4688999999999999999997 6799999999999999999999988888
Q ss_pred eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 394 THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 394 ~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.|...+..+++ +|++. ++++| .|+.|++|++.
T Consensus 242 ~~~~~v~~~~~----~~~~~-~l~~~-~d~~i~i~~~~ 273 (372)
T 1k8k_C 242 SETLPLLAVTF----ITESS-LVAAG-HDCFPVLFTYD 273 (372)
T ss_dssp CSSCCEEEEEE----EETTE-EEEEE-TTSSCEEEEEE
T ss_pred cCCCCeEEEEE----ecCCC-EEEEE-eCCeEEEEEcc
Confidence 88777777666 78988 77777 99999999975
No 101
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=8.7e-29 Score=234.68 Aligned_cols=236 Identities=15% Similarity=0.285 Sum_probs=192.9
Q ss_pred EEecccCcEEEEEecCC----CCEEEEEeCCCcEEEEeCCCCceeEEEe------CCCceeeEE--EC----CCEEE-EE
Q 014003 187 KLEGHKKAVSGIALPLR----SDKLYSGSRDGTVQLWDCHTGQSASVIN------LGAEVGSLI--CE----GPWVF-VG 249 (432)
Q Consensus 187 ~l~~H~~~V~~l~~~~~----~~~l~s~s~Dg~v~iWd~~~~~~~~~~~------~~~~~~~~~--~~----~~~l~-~~ 249 (432)
...+|.++|++++|+|+ ...+++++.++.|++||+.+++.+..+. +...+.++. ++ +.+++ ++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34589999999999984 5567777777899999999888776665 234455555 34 33554 56
Q ss_pred cCCeEEEEEccCCceE-eecCCcCCEEEEEEcC-C--EEEEEECCCcEEEEECCCCCCCccccceee---eccccCeEEE
Q 014003 250 MPNVVKAWHIESSAEF-SLDGPVGEVYSMVVAN-E--MLFAGAQDGNILVWKGIPNTQNPFQLAALL---KGHTRPVTCL 322 (432)
Q Consensus 250 ~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~-~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~---~~h~~~v~~l 322 (432)
.|+.|++||+.+++.. .+.+|...|.++.|++ + ++++++.||.|++||+.+++ ....+ ..|...|.++
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~v~~~ 167 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT-----LVAIFGGVEGHRDEVLSA 167 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-----EEEEECSTTSCSSCEEEE
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-----EEEEecccccccCceeEE
Confidence 8999999999988765 5667999999999998 5 99999999999999998764 34444 6899999999
Q ss_pred EEe--CCEEEEEeCCCeEEEEECCCCceEEEec----------------------------CCCCCcEEEEEcCCEEEEE
Q 014003 323 AVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN----------------------------GHTDAPMSLLCWDQYLLSC 372 (432)
Q Consensus 323 ~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~l~s~ 372 (432)
+|+ +++|++++.||.|++||+++++.+..+. +|...|.++.+++++|+++
T Consensus 168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 247 (366)
T 3k26_A 168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSK 247 (366)
T ss_dssp EECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEE
T ss_pred EECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEE
Confidence 997 8899999999999999999876554433 4999999999999999999
Q ss_pred eCCCcEEEEEcCCCCc--------------eeEEeeccCCcceEEEeeeeCCC--CCcEEEEEeCCCeEEEeeCCC
Q 014003 373 SLDNTIKVWIMTEEGN--------------LEVAYTHNEDHGVLALGGLNDPD--GNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 373 s~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~sp~--g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+.|+.|++||+.+... +..+..|...+..+++ +|+ ++ +|++|+.||.|++||+++
T Consensus 248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----s~~~~~~-~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF----SMDFWQK-MLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCC----EECTTSS-EEEEECTTSCEEEEECCS
T ss_pred ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEE----cCCCCCc-EEEEEecCCcEEEEECCC
Confidence 9999999999988754 5555667666666665 677 88 999999999999999864
No 102
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4e-27 Score=223.27 Aligned_cols=244 Identities=15% Similarity=0.186 Sum_probs=205.3
Q ss_pred EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEe-CCCceeeEEE--CCCEEE-EEcCCeEEEEE
Q 014003 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN-LGAEVGSLIC--EGPWVF-VGMPNVVKAWH 258 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~~~~~~--~~~~l~-~~~~~~i~vwd 258 (432)
.....+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+. +...+.++.. ++.+++ ++.|+.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 4566789999999999999999999999999999999999999999887 4556666664 566665 45899999999
Q ss_pred ccCCceEeecCCcCCEEEEEEcCC--EEEEEECC-----CcEEEEECCCCCCCc------cccceeeecccc--CeEEEE
Q 014003 259 IESSAEFSLDGPVGEVYSMVVANE--MLFAGAQD-----GNILVWKGIPNTQNP------FQLAALLKGHTR--PVTCLA 323 (432)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~d-----g~i~~wd~~~~~~~~------~~~~~~~~~h~~--~v~~l~ 323 (432)
+.+++......+...+.++.++++ .+++++.+ |.|++||+....... ......+..|.. .+.+++
T Consensus 103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (369)
T 3zwl_B 103 VSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 182 (369)
T ss_dssp TTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred CCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence 999988766668899999999998 89999998 999999998764311 123444556666 899999
Q ss_pred Ee--CCEEEEEeCCCeEEEEECCC-CceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCC
Q 014003 324 VG--GKRLYSGSMDNTIRVWDLDT-LEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNED 398 (432)
Q Consensus 324 ~~--~~~l~sgs~dg~I~vwd~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 398 (432)
|+ +++|++++.||.|++||+++ ++.+..+..|...+.++.++ +++|++++.|+.|++||+++.+.+..+. +...
T Consensus 183 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~ 261 (369)
T 3zwl_B 183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCP 261 (369)
T ss_dssp ECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC
T ss_pred EcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCC
Confidence 97 88999999999999999999 78899999999999999997 7899999999999999999988776665 4555
Q ss_pred cceEEEeeeeCCCCCcEEEEEeCCC--------------eEEEeeCCC
Q 014003 399 HGVLALGGLNDPDGNPVLICSCNDD--------------SVHLYELPS 432 (432)
Q Consensus 399 ~~~~~~~~~~sp~g~~~l~sg~~Dg--------------~I~iwdl~s 432 (432)
+..+.+ +|+++ ++++++.++ .+++||+.+
T Consensus 262 ~~~~~~----~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 304 (369)
T 3zwl_B 262 LNTAVI----TPLKE-FIILGGGQEAKDVTTTSANEGKFEARFYHKIF 304 (369)
T ss_dssp EEEEEE----CSSSS-EEEEEECCC-------------CEEEEEETTT
T ss_pred ceeEEe----cCCCc-eEEEeecCCCceEEEEecCCCcceeEEEecCC
Confidence 555555 89999 888888888 899999753
No 103
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.3e-29 Score=244.26 Aligned_cols=231 Identities=13% Similarity=0.036 Sum_probs=164.4
Q ss_pred EEeeccCceeeCCCCCeEEEEeCCCCcE----EEEEEecccCcEEEEEecC--------CCCEEEEEeCCCcEEEEeCCC
Q 014003 156 CYHWLSGNCVKGDECRFWHSWFCGEGFT----MLAKLEGHKKAVSGIALPL--------RSDKLYSGSRDGTVQLWDCHT 223 (432)
Q Consensus 156 ~~~~~~~~~~~g~~d~~i~vw~~~~~~~----~~~~l~~H~~~V~~l~~~~--------~~~~l~s~s~Dg~v~iWd~~~ 223 (432)
++.+....+++|+.|++|++||..++.. .+..+.+|++.|++++|+| ++++|||||.|++|+|||+.+
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 3444455799999999999999987632 2334679999999999987 789999999999999999987
Q ss_pred CceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCC
Q 014003 224 GQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIP 300 (432)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~ 300 (432)
+.....+ ..+...+.+++|+|+ ++++|+.||+|++||+++
T Consensus 176 ~~~~~~~-------------------------------------~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t 218 (393)
T 4gq1_A 176 EGPILAG-------------------------------------YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL 218 (393)
T ss_dssp TEEEEEE-------------------------------------EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred Cceeeee-------------------------------------cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCC
Confidence 7654432 456778889999886 788999999999999887
Q ss_pred CCCCcc--------------------ccceeeeccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCCC
Q 014003 301 NTQNPF--------------------QLAALLKGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD 357 (432)
Q Consensus 301 ~~~~~~--------------------~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~ 357 (432)
+..... .......+|...+.++.|. ++.+++++.|+++++||+.+++....+..|..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~ 298 (393)
T 4gq1_A 219 NLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTM 298 (393)
T ss_dssp CC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------
T ss_pred CcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecC
Confidence 643100 0011234678888899885 89999999999999999998887777666554
Q ss_pred CcEEEE------------------Ec----CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcE
Q 014003 358 APMSLL------------------CW----DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPV 415 (432)
Q Consensus 358 ~v~~~~------------------~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~ 415 (432)
.+..+. ++ +.++++|+.||.|++||+.+++.......|...+..++| +|||+ +
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svaf----spdG~-~ 373 (393)
T 4gq1_A 299 KLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCW----HQDGS-H 373 (393)
T ss_dssp -----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEE----CTTSS-E
T ss_pred ccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEE----cCCCC-E
Confidence 433322 22 236778889999999999999988888888888777666 99999 8
Q ss_pred EEEEeCCCeEEEee
Q 014003 416 LICSCNDDSVHLYE 429 (432)
Q Consensus 416 l~sg~~Dg~I~iwd 429 (432)
|+++++|| +.+|.
T Consensus 374 LA~as~~G-v~lvr 386 (393)
T 4gq1_A 374 LAIATEGS-VLLTR 386 (393)
T ss_dssp EEEEESSE-EEEEE
T ss_pred EEEEeCCC-eEEEE
Confidence 99998776 44444
No 104
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=8.8e-28 Score=226.00 Aligned_cols=237 Identities=13% Similarity=0.113 Sum_probs=198.1
Q ss_pred EEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc----eeEEEeCCCceeeEE--ECCC-EEE-EEcCCeEEE
Q 014003 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ----SASVINLGAEVGSLI--CEGP-WVF-VGMPNVVKA 256 (432)
Q Consensus 185 ~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~----~~~~~~~~~~~~~~~--~~~~-~l~-~~~~~~i~v 256 (432)
+....+|.+.|++++|+|++++|++++.||+|++||+.+++ ......+...+.++. +++. +++ ++.++.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 34456899999999999999999999999999999999887 666666777777665 4777 555 557999999
Q ss_pred EEc-cCCceEeecC--CcCCEEEEEEcCC-EEEEEECCCcEEEEECCC---------CCCCccccceeeeccccCeEEEE
Q 014003 257 WHI-ESSAEFSLDG--PVGEVYSMVVANE-MLFAGAQDGNILVWKGIP---------NTQNPFQLAALLKGHTRPVTCLA 323 (432)
Q Consensus 257 wd~-~~~~~~~~~~--~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~---------~~~~~~~~~~~~~~h~~~v~~l~ 323 (432)
||+ .+++...+.. |...|.++.+++. .+++++.|+.|++||+++ .+ ++..+. |...|.+++
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~-~~~~v~~~~ 157 (342)
T 1yfq_A 84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL-----NSNNTK-VKNKIFTMD 157 (342)
T ss_dssp ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES-----CSSSSS-SCCCEEEEE
T ss_pred EEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCC-----eeeEEe-eCCceEEEE
Confidence 999 9998888888 9999999999965 999999999999999886 43 234444 889999999
Q ss_pred EeCCEEEEEeCCCeEEEEECCC-Cc--eEEEecCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEcCCC------CceeE
Q 014003 324 VGGKRLYSGSMDNTIRVWDLDT-LE--AVMTLNGHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEE------GNLEV 391 (432)
Q Consensus 324 ~~~~~l~sgs~dg~I~vwd~~~-~~--~~~~~~~~~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~------~~~~~ 391 (432)
+++..+++++.|+.|++||+++ +. .......|...+.++.++ ++++++++.||.|++|+++.. +....
T Consensus 158 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred ecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence 9977799999999999999998 54 344556788889999886 589999999999999999887 66677
Q ss_pred EeeccC---------CcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 392 AYTHNE---------DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 392 ~~~~~~---------~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+..|.. .+..+++ +|+++ +|++++.||.|++||+.+
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~----s~~~~-~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEF----SPRHK-FLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEE----CTTTC-CEEEEETTSCEEEEETTT
T ss_pred eecccccccccccceeEEEEEE----cCCCC-EEEEecCCceEEEEcCcc
Confidence 777654 5555554 89999 899999999999999864
No 105
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=3.1e-28 Score=235.12 Aligned_cols=231 Identities=19% Similarity=0.241 Sum_probs=185.5
Q ss_pred ceeeCCCCCeEEEEeCCCCcE---EEEEEecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceee
Q 014003 163 NCVKGDECRFWHSWFCGEGFT---MLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS 238 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~---~~~~l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~ 238 (432)
.+++++.||.|++|++....+ .+..+.+|.+.|++++|+| ++++|++|+.||+|++||+.++......
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~-------- 120 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL-------- 120 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB--------
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc--------
Confidence 345688999999999966423 2445789999999999999 9999999999999999999887432100
Q ss_pred EEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceee--e
Q 014003 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALL--K 313 (432)
Q Consensus 239 ~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~--~ 313 (432)
......+.+|...|.+++|+++ ++++++.||.|++||+.+++ ....+ .
T Consensus 121 ----------------------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~ 173 (402)
T 2aq5_A 121 ----------------------REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-----AVLTLGPD 173 (402)
T ss_dssp ----------------------CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-----EEEEECTT
T ss_pred ----------------------CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-----ccEEEecC
Confidence 0111234678899999999987 79999999999999998864 45666 7
Q ss_pred ccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEe-cCCCCC-cEEEEEc--CCEEEEE---eCCCcEEEEEcC
Q 014003 314 GHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTL-NGHTDA-PMSLLCW--DQYLLSC---SLDNTIKVWIMT 384 (432)
Q Consensus 314 ~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~-~~~~~~-v~~~~~~--~~~l~s~---s~dg~i~iwd~~ 384 (432)
.|...|.+++|+ +++|++++.||.|++||+++++.+..+ .+|... +.++.++ +.+|+++ +.|+.|++||++
T Consensus 174 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~ 253 (402)
T 2aq5_A 174 VHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTK 253 (402)
T ss_dssp TCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETT
T ss_pred CCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCc
Confidence 899999999997 889999999999999999999999999 788876 7888887 6788888 799999999999
Q ss_pred CCCceeEEe--eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 385 EEGNLEVAY--THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 385 ~~~~~~~~~--~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+.+...... .+...+..+.+ +|+++.++++|+.||.|++||+.+
T Consensus 254 ~~~~~~~~~~~~~~~~v~~~~~----s~~~~~l~~~g~~dg~i~i~d~~~ 299 (402)
T 2aq5_A 254 HLEEPLSLQELDTSSGVLLPFF----DPDTNIVYLCGKGDSSIRYFEITS 299 (402)
T ss_dssp BCSSCSEEEECCCCSSCEEEEE----ETTTTEEEEEETTCSCEEEEEECS
T ss_pred cccCCceEEeccCCCceeEEEE----cCCCCEEEEEEcCCCeEEEEEecC
Confidence 876532222 34455555544 899995556777899999999863
No 106
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=5.7e-28 Score=235.99 Aligned_cols=236 Identities=12% Similarity=0.207 Sum_probs=186.4
Q ss_pred cccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-----------eeEEEeCC-------------CceeeEEE--CC
Q 014003 190 GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ-----------SASVINLG-------------AEVGSLIC--EG 243 (432)
Q Consensus 190 ~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~-----------~~~~~~~~-------------~~~~~~~~--~~ 243 (432)
.|.+.|++++|+|++++|++|+.||.|++||+.+++ ....+..+ ..+.++.. ++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 478999999999999999999999999999999876 35555543 44666653 33
Q ss_pred ---CEEEEEcCCeEEEEEccCCceE-----------------------------------------eecCCcCCEEEEEE
Q 014003 244 ---PWVFVGMPNVVKAWHIESSAEF-----------------------------------------SLDGPVGEVYSMVV 279 (432)
Q Consensus 244 ---~~l~~~~~~~i~vwd~~~~~~~-----------------------------------------~~~~~~~~v~~l~~ 279 (432)
.+++++.|+.|++||+.++... ...+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 3566779999999999764431 13678999999999
Q ss_pred cCC--EEEEEECCCcEEEEECCCCCCCccccce-------eeeccccCeEEEEEe--C-CEEEEEeCCCeEEEEECCCCc
Q 014003 280 ANE--MLFAGAQDGNILVWKGIPNTQNPFQLAA-------LLKGHTRPVTCLAVG--G-KRLYSGSMDNTIRVWDLDTLE 347 (432)
Q Consensus 280 ~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~-------~~~~h~~~v~~l~~~--~-~~l~sgs~dg~I~vwd~~~~~ 347 (432)
+++ ++++| .|+.|++||+..... ... .+.+|...|.+++|+ + ++|++|+.||.|++||+++++
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDR----SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEE----EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCc----eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence 988 78887 899999999985321 222 356899999999998 5 899999999999999999988
Q ss_pred e----EEEecCCCC------------CcEEEEEc--CCEEEEEeCCCcEEEEEcCC-CCceeEEeeccCCcceE------
Q 014003 348 A----VMTLNGHTD------------APMSLLCW--DQYLLSCSLDNTIKVWIMTE-EGNLEVAYTHNEDHGVL------ 402 (432)
Q Consensus 348 ~----~~~~~~~~~------------~v~~~~~~--~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~------ 402 (432)
. +..+.+|.. .|.++.++ +++|++++. +.|++||+++ .+.+..+..|......+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence 7 788988886 89999998 689999998 9999999997 77777777765322210
Q ss_pred -----EEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 403 -----ALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 403 -----~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.+.+.|+|+++ +|++|+.||.|++||+.+
T Consensus 340 ~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~ 373 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNT 373 (447)
T ss_dssp SGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTT
T ss_pred cccccceEEEECCCCC-EEEEeccCCEEEEEEcCC
Confidence 11234489999 889999999999999864
No 107
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.6e-27 Score=226.47 Aligned_cols=242 Identities=13% Similarity=0.076 Sum_probs=179.2
Q ss_pred EEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC-ceeeEEECCCEEE--EEcC
Q 014003 175 SWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA-EVGSLICEGPWVF--VGMP 251 (432)
Q Consensus 175 vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~l~--~~~~ 251 (432)
+|++.+. +++..+.+|...|++++|+|+|++|++|+.|+ +++||+++++......... ....+...+..++ ++.+
T Consensus 3 i~s~~~~-~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (355)
T 3vu4_A 3 LGSMITR-NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVK 80 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSST
T ss_pred ccccccc-CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCc
Confidence 3455444 55667789999999999999999999998775 7899999887766655432 2223334566553 3467
Q ss_pred CeEEEEEccCCceEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEE
Q 014003 252 NVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYS 331 (432)
Q Consensus 252 ~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s 331 (432)
+.|++||..+++......+...|.++.++++.++++. |+.|++||+.+... .+..+.. +...++++..+++.
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~----~~~~~~~---~~~~~~~s~~~la~ 152 (355)
T 3vu4_A 81 EVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWK----RITDDIR---FGGVCEFSNGLLVY 152 (355)
T ss_dssp TEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCC----BSSCCEE---EEEEEEEETTEEEE
T ss_pred cEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEE-cCEEEEEECCCCce----eeEEecc---CCceEEEEccEEEE
Confidence 8999999999987766667889999999999766654 78999999988621 2333333 23334455577766
Q ss_pred --EeCCCeEEEEECCCCc----------------eEEEecCCCCCcEEEEEc--CCEEEEEeCCCc-EEEEEcCCCCcee
Q 014003 332 --GSMDNTIRVWDLDTLE----------------AVMTLNGHTDAPMSLLCW--DQYLLSCSLDNT-IKVWIMTEEGNLE 390 (432)
Q Consensus 332 --gs~dg~I~vwd~~~~~----------------~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~-i~iwd~~~~~~~~ 390 (432)
|+.||.|++||+++++ ++..+.+|...|.+++++ +++|++++.|++ |++||+++++.+.
T Consensus 153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp EESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 5889999999999876 278899999999999998 789999999998 9999999999888
Q ss_pred EEe-e-ccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 391 VAY-T-HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 391 ~~~-~-~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.+. + |...+..++| +|+|+ +|++++.|++|++||++
T Consensus 233 ~~~~g~h~~~v~~~~~----s~~~~-~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKW----STDGS-KLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp EEECTTCCSCEEEEEE----CTTSC-EEEEEETTCEEEEEESS
T ss_pred EEEcCCCCCcEEEEEE----CCCCC-EEEEEECCCEEEEEEcc
Confidence 887 4 7777777766 89999 99999999999999985
No 108
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=1.3e-27 Score=233.42 Aligned_cols=240 Identities=16% Similarity=0.219 Sum_probs=184.9
Q ss_pred EEEecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeEEEe---CCCceeeEEE---CCCEEEE-EcCCeEEEE
Q 014003 186 AKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVIN---LGAEVGSLIC---EGPWVFV-GMPNVVKAW 257 (432)
Q Consensus 186 ~~l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~---~~~~~~~~~~---~~~~l~~-~~~~~i~vw 257 (432)
....+|...|++|+|+| ++++||+|+.||+|+|||+.+++....+. +...+.++.. ++.+|++ +.|+.|++|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 34568999999999998 56799999999999999999887665554 4567777774 4556654 589999999
Q ss_pred EccCCceEeec---CCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe---CCEE
Q 014003 258 HIESSAEFSLD---GPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRL 329 (432)
Q Consensus 258 d~~~~~~~~~~---~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l 329 (432)
|++++...... .+...+.+++++++ ++++|+.||.|++||++.. .+..+.+|...|++++|+ ..++
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~------~~~~~~~h~~~v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK------ELWNLRMHKKKVTHVALNPCCDWFL 266 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC------BCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc------eeEEEecccceEEeeeecCCCceEE
Confidence 99887654333 33445788899887 9999999999999998754 356678999999999997 4588
Q ss_pred EEEeCCCeEEEEECCCCceEEE---ecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCc--ceE
Q 014003 330 YSGSMDNTIRVWDLDTLEAVMT---LNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDH--GVL 402 (432)
Q Consensus 330 ~sgs~dg~I~vwd~~~~~~~~~---~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~ 402 (432)
++|+.|+.|++||+++.+.... ..+|...|.+++|+ +++|++++.||.|++||+.+......+..|.... ...
T Consensus 267 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 346 (435)
T 4e54_B 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLT 346 (435)
T ss_dssp EEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSC
T ss_pred EEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccce
Confidence 9999999999999998765443 35789999999998 7899999999999999999988877766554321 111
Q ss_pred EEeeeeCCCCCcEEEEE------------eCCCeEEEeeCCC
Q 014003 403 ALGGLNDPDGNPVLICS------------CNDDSVHLYELPS 432 (432)
Q Consensus 403 ~~~~~~sp~g~~~l~sg------------~~Dg~I~iwdl~s 432 (432)
.+...|+|++. +++++ ..++.|++||+.+
T Consensus 347 ~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~ 387 (435)
T 4e54_B 347 PIKAAWHPRYN-LIVVGRYPDPNFKSCTPYELRTIDVFDGNS 387 (435)
T ss_dssp CCBCEECSSSS-CEEEECCCCTTSCCSSTTCCCCEEEECSSS
T ss_pred eEEEEEcCCCC-EEEEEEcCCCCeEEEEecCCCEEEEEECCC
Confidence 22334466665 33333 2456899999764
No 109
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=7.6e-28 Score=231.66 Aligned_cols=254 Identities=15% Similarity=0.205 Sum_probs=199.1
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeEEEe--------------CCCc
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVIN--------------LGAE 235 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~--------------~~~~ 235 (432)
+.+++|+.+.. +....+.+|.+.|++++|+| ++++|++|+.||+|++||+.+++....+. +...
T Consensus 23 ~~~~v~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 23 STRRVLGLELN-KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHTEEEC-TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred CcceeeccccC-cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 44677777554 44667889999999999999 99999999999999999999887665554 5566
Q ss_pred eeeEEE---CCC-EEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC-----EEEEEECCCcEEEEECCCCCCCcc
Q 014003 236 VGSLIC---EGP-WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-----MLFAGAQDGNILVWKGIPNTQNPF 306 (432)
Q Consensus 236 ~~~~~~---~~~-~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~-----~l~~g~~dg~i~~wd~~~~~~~~~ 306 (432)
+.++.. ++. +++++.++.|++||+.+++......+...+.++.+.+. ++++++.||.|++||+.++.
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~---- 177 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS---- 177 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC----
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc----
Confidence 777764 333 45556799999999999988877778889999999863 89999999999999998764
Q ss_pred ccceeeeccccCeEEEEEe--CC-EEEEEeCCCeEEEEECCCCc-eEEEe---------------cCCCCCcEEEEEc--
Q 014003 307 QLAALLKGHTRPVTCLAVG--GK-RLYSGSMDNTIRVWDLDTLE-AVMTL---------------NGHTDAPMSLLCW-- 365 (432)
Q Consensus 307 ~~~~~~~~h~~~v~~l~~~--~~-~l~sgs~dg~I~vwd~~~~~-~~~~~---------------~~~~~~v~~~~~~-- 365 (432)
....+..|...|.+++|+ +. .+++++.||.|++||++++. ++..+ ..|...|.++.++
T Consensus 178 -~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 178 -CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp -CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred -eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence 467788899999999997 55 69999999999999998876 44444 5788899999998
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCc--ceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 366 DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDH--GVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 366 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+++|++++.||.|++||+.+.+.......+.... ....+.....+ +. .+++++.|+.|++||+.+
T Consensus 257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~i~v~d~~~ 323 (408)
T 4a11_B 257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC-SS-EFVFVPYGSTIAVYTVYS 323 (408)
T ss_dssp SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSS-SS-CEEEEEETTEEEEEETTT
T ss_pred CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCC-Cc-eEEEEecCCEEEEEECcC
Confidence 6899999999999999999887655444322111 11111111122 33 566677899999999864
No 110
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=8.1e-27 Score=227.02 Aligned_cols=265 Identities=15% Similarity=0.150 Sum_probs=207.5
Q ss_pred ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEE-----EEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeE
Q 014003 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLA-----KLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSAS 228 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~-----~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~ 228 (432)
.+++.+....+++++.++.|++||+.++ +.+. .+.+|...|.+++|+++++++++++.|++|++||+++++...
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~ 205 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDINSG-QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA 205 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETTTC-CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECCCC-eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE
Confidence 4556664447788889999999999887 4444 345899999999999999999999999999999999999888
Q ss_pred EEeC-CCceeeEE--ECCCEEE-EE-cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEE--------CCCcE
Q 014003 229 VINL-GAEVGSLI--CEGPWVF-VG-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA--------QDGNI 293 (432)
Q Consensus 229 ~~~~-~~~~~~~~--~~~~~l~-~~-~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~--------~dg~i 293 (432)
.+.. ...+.++. +++..++ ++ .++.|++||+++++..........+.+++++++ .+++++ .||.|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i 285 (433)
T 3bws_A 206 TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRL 285 (433)
T ss_dssp EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEE
T ss_pred EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeE
Confidence 8874 34455444 4677664 55 589999999999887766666677999999988 777777 58899
Q ss_pred EEEECCCCCCCccccceeeeccccCeEEEEEe--CC-EEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCE
Q 014003 294 LVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GK-RLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQY 368 (432)
Q Consensus 294 ~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~ 368 (432)
++||+.+++ .... ..|...+.+++|+ ++ .+++++.|+.|++||+++++.+..+. +...+.+++++ +++
T Consensus 286 ~~~d~~~~~-----~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~ 358 (433)
T 3bws_A 286 GIYSMDKEK-----LIDT-IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKY 358 (433)
T ss_dssp EEEETTTTE-----EEEE-EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSE
T ss_pred EEEECCCCc-----EEee-ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCE
Confidence 999998764 2333 3456688899997 65 45667899999999999999988886 66778889888 678
Q ss_pred EEEEeC---------------CCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEe-CCCeEEEeeCCC
Q 014003 369 LLSCSL---------------DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC-NDDSVHLYELPS 432 (432)
Q Consensus 369 l~s~s~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~-~Dg~I~iwdl~s 432 (432)
|++++. ||.|++||+.+.+.+..+.. ...+..+++ +|+|+ +|++++ .|+.|++|+++.
T Consensus 359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~----s~dg~-~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 359 LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDV----SPDNR-YLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEE----CTTSC-EEEEEETTTTEEEEEEETT
T ss_pred EEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEE----cCCCC-EEEEEECCCCeEEEEEecC
Confidence 888776 57999999998877766654 333444444 89999 555554 699999999863
No 111
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.2e-28 Score=227.18 Aligned_cols=229 Identities=11% Similarity=0.033 Sum_probs=181.3
Q ss_pred eccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceee
Q 014003 159 WLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS 238 (432)
Q Consensus 159 ~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~ 238 (432)
.....+++|+.||.|++||+.++ +.+..+. ...|.+++|+|+ +++++.|++|++|+...
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~-~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~--------------- 104 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDS-KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN--------------- 104 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSS-SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT---------------
T ss_pred CCCCEEEEECCCCcEEEEECCCC-cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC---------------
Confidence 45568999999999999999877 4455555 577888889888 99999999999999763
Q ss_pred EEECCCEEEEEcCCeEEEEEccCCceEe--ecCCcCCEEEEEEcC--C--EEEEEECCCcEEEEECCCCCCCccccceee
Q 014003 239 LICEGPWVFVGMPNVVKAWHIESSAEFS--LDGPVGEVYSMVVAN--E--MLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (432)
Q Consensus 239 ~~~~~~~l~~~~~~~i~vwd~~~~~~~~--~~~~~~~v~~l~~~~--~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~ 312 (432)
.+.+|++.+++.+. ...|...|.++.++| + ++++++.||.|++||+++++. ....
T Consensus 105 --------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----~~~~ 165 (343)
T 3lrv_A 105 --------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-----YIVH 165 (343)
T ss_dssp --------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-----EEEE
T ss_pred --------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-----EEEE
Confidence 34568887777432 236678899999998 5 899999999999999988752 3333
Q ss_pred -eccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceE-EEecC-CCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 014003 313 -KGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAV-MTLNG-HTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 313 -~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~-~~~~~-~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~ 385 (432)
..|...+.+++|+ +.+|++|+.||.|++||+++++.+ ..+.. |...|.++.|+ +.+|++++ |+.|++||+++
T Consensus 166 ~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~ 244 (343)
T 3lrv_A 166 SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRK 244 (343)
T ss_dssp CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTS
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCC
Confidence 3456689999997 899999999999999999999988 88888 99999999998 68999999 55999999999
Q ss_pred CCceeEEee---ccCCcceEEEeeeeCCCCCcEEEEEeC-CCeEEEeeCC
Q 014003 386 EGNLEVAYT---HNEDHGVLALGGLNDPDGNPVLICSCN-DDSVHLYELP 431 (432)
Q Consensus 386 ~~~~~~~~~---~~~~~~~~~~~~~~sp~g~~~l~sg~~-Dg~I~iwdl~ 431 (432)
.+.+..+.. +...+.. .++.|+|+|+ +|++++. |+.|++|++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~-~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 245 DVGTLAYPTYTIPEFKTGT--VTYDIDDSGK-NMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp STTCBSSCCCBC-----CC--EEEEECTTSS-EEEEEETTTTEEEEEEEC
T ss_pred CCcceeecccccccccccc--eEEEECCCCC-EEEEecCCCCcEEEEEEc
Confidence 877654443 2222222 2344599999 7888777 9999999874
No 112
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=3.5e-28 Score=227.16 Aligned_cols=203 Identities=20% Similarity=0.287 Sum_probs=161.5
Q ss_pred EEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEe
Q 014003 187 KLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFS 266 (432)
Q Consensus 187 ~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~ 266 (432)
.+.+|++.|++++|+|++++|++|+.|++|++||+.+++.... ..
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~-----------------------------------~~ 52 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI-----------------------------------AD 52 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEE-----------------------------------EE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE-----------------------------------EE
Confidence 4679999999999999999999999999999999987643211 13
Q ss_pred ecCCcCCEEEEEEcC----CEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe----CCEEEEEeCCCeE
Q 014003 267 LDGPVGEVYSMVVAN----EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG----GKRLYSGSMDNTI 338 (432)
Q Consensus 267 ~~~~~~~v~~l~~~~----~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I 338 (432)
+.+|...|.+++|++ ++|++|+.|++|++||++++. .+....+.+|...|.+++|+ +.+|++|+.|+.|
T Consensus 53 l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~---~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i 129 (316)
T 3bg1_A 53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT---WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI 129 (316)
T ss_dssp EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC---CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCE
T ss_pred EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc---ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCE
Confidence 468999999999964 389999999999999998764 23456678899999999996 5689999999999
Q ss_pred EEEECCCCce---EEEecCCCCCcEEEEEcC-------------------CEEEEEeCCCcEEEEEcCCCC---ceeEEe
Q 014003 339 RVWDLDTLEA---VMTLNGHTDAPMSLLCWD-------------------QYLLSCSLDNTIKVWIMTEEG---NLEVAY 393 (432)
Q Consensus 339 ~vwd~~~~~~---~~~~~~~~~~v~~~~~~~-------------------~~l~s~s~dg~i~iwd~~~~~---~~~~~~ 393 (432)
++||++++.. ...+.+|...+.++.+++ ++|++++.|++|++||++... .+..+.
T Consensus 130 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~ 209 (316)
T 3bg1_A 130 SLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE 209 (316)
T ss_dssp EEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB
T ss_pred EEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc
Confidence 9999987632 455678988898888873 489999999999999997653 344556
Q ss_pred eccCCcceEEEeeeeCCCC---CcEEEEEeCCCeEEEeeCC
Q 014003 394 THNEDHGVLALGGLNDPDG---NPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 394 ~~~~~~~~~~~~~~~sp~g---~~~l~sg~~Dg~I~iwdl~ 431 (432)
.|...+..+++ +|++ ..+|++++.||+|++|+++
T Consensus 210 ~h~~~V~~v~~----sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 210 AHSDWVRDVAW----APSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp CCSSCEEEEEC----CCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred cCCCceEEEEe----cCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 67777666665 8886 2389999999999999975
No 113
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-26 Score=225.67 Aligned_cols=266 Identities=13% Similarity=0.082 Sum_probs=201.9
Q ss_pred CceEEeeccCceeeCCCCCeEEEEeCCCCc--EEEEEEe-----------------------------------------
Q 014003 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGF--TMLAKLE----------------------------------------- 189 (432)
Q Consensus 153 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~--~~~~~l~----------------------------------------- 189 (432)
..+++.+.+..+ .++.++.|++||+.++. +.+..+.
T Consensus 8 ~~v~~s~dg~~l-~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (450)
T 2vdu_B 8 QNLLTSRDGSLV-FAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKR 86 (450)
T ss_dssp CEEEECSSSSEE-EEEETTEEEEEEEETTTEEEEEEEEECCC--------------------------------------
T ss_pred EEEEecCCCCEE-EEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccc
Confidence 456666666644 44467899999997774 1344444
Q ss_pred -------------cccCcEEEEEecCCCCEE-EEEeCCCcEEEEeCC--CCceeEEEe---CCCceeeEE--ECCCEEEE
Q 014003 190 -------------GHKKAVSGIALPLRSDKL-YSGSRDGTVQLWDCH--TGQSASVIN---LGAEVGSLI--CEGPWVFV 248 (432)
Q Consensus 190 -------------~H~~~V~~l~~~~~~~~l-~s~s~Dg~v~iWd~~--~~~~~~~~~---~~~~~~~~~--~~~~~l~~ 248 (432)
+|.+.|.+++|+|++++| ++++.||+|++||+. +++.+..+. +...+.++. +++.++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 166 (450)
T 2vdu_B 87 TAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVII 166 (450)
T ss_dssp -------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred cCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEE
Confidence 344479999999999996 899999999999999 888887774 456666665 46666665
Q ss_pred E-cCCeEEEEEccCCceE-----eecCCcCCEEEEEEcCC-----EEEEEECCCcEEEEECCCCCCCcccccee-eeccc
Q 014003 249 G-MPNVVKAWHIESSAEF-----SLDGPVGEVYSMVVANE-----MLFAGAQDGNILVWKGIPNTQNPFQLAAL-LKGHT 316 (432)
Q Consensus 249 ~-~~~~i~vwd~~~~~~~-----~~~~~~~~v~~l~~~~~-----~l~~g~~dg~i~~wd~~~~~~~~~~~~~~-~~~h~ 316 (432)
+ .++.+++|++.++... .+.+|...|.+++|+|+ ++++|+.|+.|++||+.++.. +.. +.+|.
T Consensus 167 ~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~-----~~~~~~~h~ 241 (450)
T 2vdu_B 167 ADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI-----VDKWLFGHK 241 (450)
T ss_dssp EETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC-----EEEECCCCS
T ss_pred EeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce-----eeeeecCCC
Confidence 4 7899999999887654 45678899999999986 899999999999999987642 444 56899
Q ss_pred cCeEEEEEe-CCEEEEEeCCCeEEEEECCCCceEEEecCC-------------------------CCCcEEEEEc--CCE
Q 014003 317 RPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGH-------------------------TDAPMSLLCW--DQY 368 (432)
Q Consensus 317 ~~v~~l~~~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~-------------------------~~~v~~~~~~--~~~ 368 (432)
..|.+++|+ +++|++++.|+.|++||+++++++..+..+ ...+.++.+. +++
T Consensus 242 ~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 321 (450)
T 2vdu_B 242 HFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF 321 (450)
T ss_dssp SCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred CceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence 999999996 999999999999999999999998888632 3457788887 789
Q ss_pred EEEEe-CCCcEEEEEc--CCC---CceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeC------CCeEEEeeC
Q 014003 369 LLSCS-LDNTIKVWIM--TEE---GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCN------DDSVHLYEL 430 (432)
Q Consensus 369 l~s~s-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~------Dg~I~iwdl 430 (432)
|++++ .|+.|++|++ .+. +.+..+..+ ..+..+++ +|++. ++++++. +..|.+|.+
T Consensus 322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~----~~~~~-~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 322 VAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSA----HNDEF-QVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEE----ETTEE-EEEECCTTCCSSCCCSEEEEEE
T ss_pred EEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEe----cCCcE-EEEEecccCCCCCCcceEEEEE
Confidence 99998 8999999999 555 334444444 44444444 78532 4444443 556888875
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.1e-25 Score=215.90 Aligned_cols=256 Identities=13% Similarity=0.115 Sum_probs=206.9
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEE-EEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE-
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKL-YSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI- 240 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l-~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~- 240 (432)
.+++++.|+.|++||+.++ +.+..+.+|. .+.+++|+|++++| ++++.|++|++||+.+++....+.....+..+.
T Consensus 4 l~vs~~~d~~v~v~d~~~~-~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~ 81 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSN-KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81 (391)
T ss_dssp EEEEETTTTEEEEEETTTT-EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCC-eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEE
Confidence 4678899999999999887 7788888775 48999999999977 677799999999999999999998887777666
Q ss_pred -ECCCEEE-EE-cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EE-EEEECCCcEEEEECCCCCCCccccceeeec
Q 014003 241 -CEGPWVF-VG-MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--ML-FAGAQDGNILVWKGIPNTQNPFQLAALLKG 314 (432)
Q Consensus 241 -~~~~~l~-~~-~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~ 314 (432)
++++.++ ++ .++.|++||+.+++......+...+.+++++++ .+ ++++.++.|++||+.+++ ....+..
T Consensus 82 spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-----~~~~~~~ 156 (391)
T 1l0q_A 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-----VINTVSV 156 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEEEC
T ss_pred CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc-----EEEEEec
Confidence 4677665 44 469999999999987766666778899999988 45 678889999999998764 3455554
Q ss_pred cccCeEEEEEe--CCEE-EEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEe---CCCcEEEEEcCCC
Q 014003 315 HTRPVTCLAVG--GKRL-YSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCS---LDNTIKVWIMTEE 386 (432)
Q Consensus 315 h~~~v~~l~~~--~~~l-~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s---~dg~i~iwd~~~~ 386 (432)
+ ..+.+++|+ ++++ ++++.|+.|++||+++++.+..+. +...+.++.++ +++|++++ .++.|++||+.++
T Consensus 157 ~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 157 G-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred C-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 4 456888997 6666 677889999999999999888876 45567888887 67888887 6899999999988
Q ss_pred CceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 387 GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+.+..+..+.. +..+ .++|+|+.++++++.|+.|++||+++
T Consensus 235 ~~~~~~~~~~~-~~~~----~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 235 KITARIPVGPD-PAGI----AVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp EEEEEEECCSS-EEEE----EECTTSSEEEEEETTTTEEEEEETTT
T ss_pred eEEEEEecCCC-ccEE----EEccCCCEEEEEcCCCCEEEEEECCC
Confidence 77766665443 3333 44899996668889999999999864
No 115
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.7e-27 Score=229.27 Aligned_cols=233 Identities=12% Similarity=0.075 Sum_probs=182.8
Q ss_pred CCCCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCce
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNC 164 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.+.||...|+.++|+|+| .|+++.+|+......... . . ......+.+.|.+..+
T Consensus 47 ~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~~~--~-----~------------~~~V~~vawSPdG~~L 100 (588)
T 2j04_A 47 DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGLLNS--Q-----P------------VCYPRVCKPSPIDDWM 100 (588)
T ss_dssp CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCSSTT--S-----C------------SCCEEEEEECSSSSCE
T ss_pred eecCCCccEEEEEECCCC-------CcceEEEEeCCCceEeec--C-----C------------CCcEEEEEECCCCCEE
Confidence 457999999999999999 488888886543332100 0 0 0011355667777799
Q ss_pred eeCCCCCeEEEEeCCCCcEEEEEEecccC-----cEEEEEecCCCCEEEEEeCCCcEEEEeCCCCce-------eEEEeC
Q 014003 165 VKGDECRFWHSWFCGEGFTMLAKLEGHKK-----AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS-------ASVINL 232 (432)
Q Consensus 165 ~~g~~d~~i~vw~~~~~~~~~~~l~~H~~-----~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~-------~~~~~~ 232 (432)
++++.||.|++|+.+. .+..+. |.. .|.+++|+|+|++||+|+.||+|++||+.++.. +.++..
T Consensus 101 As~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~ 176 (588)
T 2j04_A 101 AVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRL 176 (588)
T ss_dssp EEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEEC
T ss_pred EEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeec
Confidence 9999999999999644 566677 776 499999999999999999999999999998752 233221
Q ss_pred CCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceee
Q 014003 233 GAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (432)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~ 312 (432)
. ..+|...|.+++|+|+-+++++.|++|++||+..+.. ......+
T Consensus 177 ~---------------------------------~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~--~~~~~tL 221 (588)
T 2j04_A 177 S---------------------------------DAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSH--QPVSRMI 221 (588)
T ss_dssp S---------------------------------CTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSS--CCCEEEE
T ss_pred c---------------------------------cccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCcc--ccceeee
Confidence 1 1467789999999999888999999999999987652 1123455
Q ss_pred -eccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEE--c--CCEEEEEeCCCcEEEEEcC
Q 014003 313 -KGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLC--W--DQYLLSCSLDNTIKVWIMT 384 (432)
Q Consensus 313 -~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~--~--~~~l~s~s~dg~i~iwd~~ 384 (432)
.+|...|.+++|+++.+|+++ ++.|++||+.+++......+|...+..+.+ + +..|++++.||+ ++|..+
T Consensus 222 ~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 222 QNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp ECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred cccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 478899999999988999997 699999999988884444489999999999 6 468999999999 999874
No 116
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=5.5e-27 Score=215.42 Aligned_cols=237 Identities=14% Similarity=0.070 Sum_probs=172.6
Q ss_pred eeeCCCCCeEEEEeCCCC--cEEEEEEecccCcEEEEEecC-------------------------C----CCEEEEEeC
Q 014003 164 CVKGDECRFWHSWFCGEG--FTMLAKLEGHKKAVSGIALPL-------------------------R----SDKLYSGSR 212 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~--~~~~~~l~~H~~~V~~l~~~~-------------------------~----~~~l~s~s~ 212 (432)
|+.......|++|+..++ .+.+.++..|+.+|..+++.| + ++.+++++.
T Consensus 56 ~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~ 135 (356)
T 2w18_A 56 CIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGN 135 (356)
T ss_dssp EEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEE
T ss_pred EEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCC
Confidence 555555688999999876 378889999997666665555 4 444555442
Q ss_pred CCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEE---cCCeEEEEEccC-CceE-eecCCcCCEEEEEEcC-----C
Q 014003 213 DGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVG---MPNVVKAWHIES-SAEF-SLDGPVGEVYSMVVAN-----E 282 (432)
Q Consensus 213 Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~i~vwd~~~-~~~~-~~~~~~~~v~~l~~~~-----~ 282 (432)
+ +++|++. .++++.++ .++.|++|++.. ++.. ....|...+..++|++ +
T Consensus 136 ~--~~v~~l~-------------------~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~ 194 (356)
T 2w18_A 136 I--KAVLGLT-------------------KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQE 194 (356)
T ss_dssp E--EEEEEET-------------------TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTT
T ss_pred e--EEEEecC-------------------CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCc
Confidence 2 4445443 34445554 499999999944 5543 4455666555555555 4
Q ss_pred EEEEEECCCcEEEEECCCCCCCccccceeeeccc---cCeEEEEEe--CCEE------------EEEeCCCeEEEEECCC
Q 014003 283 MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT---RPVTCLAVG--GKRL------------YSGSMDNTIRVWDLDT 345 (432)
Q Consensus 283 ~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~---~~v~~l~~~--~~~l------------~sgs~dg~I~vwd~~~ 345 (432)
.|++++.|++|++||+.+++ .+..+.+|. ..+.+++|+ +.++ ++|+.|++|++||..+
T Consensus 195 ~LaSgS~D~TIkIWDl~TGk-----~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 195 ALLGTTIMNNIVIWNLKTGQ-----LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp EEEEEETTSEEEEEETTTCC-----EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred eEEEecCCCcEEEEECCCCc-----EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 99999999999999999875 466676543 356666776 5554 6788999999999999
Q ss_pred CceEEEe-----cCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcc-eEEEeeeeCCCCCcEEEEE
Q 014003 346 LEAVMTL-----NGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHG-VLALGGLNDPDGNPVLICS 419 (432)
Q Consensus 346 ~~~~~~~-----~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~g~~~l~sg 419 (432)
++.+..+ .+|.....+..+++.++++++.|++|+|||+.+++.+..+.+|...+. .++| +|||+ +|++|
T Consensus 270 gk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vaf----SPDG~-~LaSG 344 (356)
T 2w18_A 270 TLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKW----SGTDS-HLLAG 344 (356)
T ss_dssp TEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEE----CSSSS-EEEEE
T ss_pred CEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEE----CCCCC-EEEEE
Confidence 9988776 477776666667788999999999999999999999998887776544 3555 99999 99999
Q ss_pred eCCCeEEEeeCC
Q 014003 420 CNDDSVHLYELP 431 (432)
Q Consensus 420 ~~Dg~I~iwdl~ 431 (432)
+.|++|+|||+.
T Consensus 345 S~D~TIklWd~~ 356 (356)
T 2w18_A 345 QKDGNIFVYHYS 356 (356)
T ss_dssp CTTSCEEEEEEC
T ss_pred ECCCcEEEecCC
Confidence 999999999964
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1.1e-27 Score=220.05 Aligned_cols=185 Identities=14% Similarity=0.019 Sum_probs=137.1
Q ss_pred CCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecC---CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCc----ee--e
Q 014003 168 DECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPL---RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE----VG--S 238 (432)
Q Consensus 168 ~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~---~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~----~~--~ 238 (432)
+.|+.|++|++....+.+..+.+|...++.++|++ ++.+|++++.|++|+|||++++++++++..+.. +. .
T Consensus 154 g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~va 233 (356)
T 2w18_A 154 LSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKA 233 (356)
T ss_dssp STTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEE
T ss_pred CCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEE
Confidence 36999999999664477888899999999999999 789999999999999999999999998863221 11 1
Q ss_pred EEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceee-----e
Q 014003 239 LICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALL-----K 313 (432)
Q Consensus 239 ~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~-----~ 313 (432)
+.+++.+++++.... .+| .+++|+.|++|++||..++.. +..+ .
T Consensus 234 fSpdG~~lvs~s~~~-~~w-------------------------~laSGs~D~tIklWd~~tgk~-----l~v~~~~~p~ 282 (356)
T 2w18_A 234 YSEMGLLFIVLSHPC-AKE-------------------------SESLRSPVFQLIVINPKTTLS-----VGVMLYCLPP 282 (356)
T ss_dssp EEETTEEEEEEC--------------------------------------CCEEEEEEETTTTEE-----EEEEEECCCT
T ss_pred ECCCCCEEEEeccCC-Ccc-------------------------eeeccCCCcEEEEEECCCCEE-----EEEEEeeccC
Confidence 222333322221100 001 357899999999999987742 2222 4
Q ss_pred ccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcE-EEEEc--CCEEEEEeCCCcEEEEEc
Q 014003 314 GHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPM-SLLCW--DQYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 314 ~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~-~~~~~--~~~l~s~s~dg~i~iwd~ 383 (432)
+|...+.+..+++.++++++.|++|+|||+++++++.++.+|...+. +++|+ +++|++|+.|++|+|||+
T Consensus 283 Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 283 GQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 67766767777799999999999999999999999999999988765 47787 689999999999999996
No 118
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=6.8e-26 Score=214.71 Aligned_cols=239 Identities=13% Similarity=0.198 Sum_probs=189.1
Q ss_pred EEEEEEecccCcEEEEEecCC---CCEEEEEeCCCcEEEEeCCC-Ccee-EEEe-CCCceeeEEE--CCCEEEE-EcCCe
Q 014003 183 TMLAKLEGHKKAVSGIALPLR---SDKLYSGSRDGTVQLWDCHT-GQSA-SVIN-LGAEVGSLIC--EGPWVFV-GMPNV 253 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~---~~~l~s~s~Dg~v~iWd~~~-~~~~-~~~~-~~~~~~~~~~--~~~~l~~-~~~~~ 253 (432)
+.+..+.+|.+.|++++|+|+ |++|++|+.||+|++||+++ +... ..+. +...+.++.. ++.++++ +.|+.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 567788999999999999999 69999999999999999997 5544 4444 5666777664 6666654 58999
Q ss_pred EEEEEccCCceEeecCCcCCEEEEEE--cCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEE
Q 014003 254 VKAWHIESSAEFSLDGPVGEVYSMVV--ANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRL 329 (432)
Q Consensus 254 i~vwd~~~~~~~~~~~~~~~v~~l~~--~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l 329 (432)
|++||+++++......|...|.++.| +++ ++++++.||.|++||+++++ .+..+..+ ..+.++.+....+
T Consensus 110 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~-~~~~~~~~~~~~~ 183 (368)
T 3mmy_A 110 AKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-----PMMVLQLP-ERCYCADVIYPMA 183 (368)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-----CSEEEECS-SCEEEEEEETTEE
T ss_pred EEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-----EEEEEecC-CCceEEEecCCee
Confidence 99999999998888899999999999 766 79999999999999998865 35566655 4678888888999
Q ss_pred EEEeCCCeEEEEECCCCceEEEec----CCCCCcEEEEEcCC----EEEEEeCCCcEEEEEcCCC---CceeEEeeccC-
Q 014003 330 YSGSMDNTIRVWDLDTLEAVMTLN----GHTDAPMSLLCWDQ----YLLSCSLDNTIKVWIMTEE---GNLEVAYTHNE- 397 (432)
Q Consensus 330 ~sgs~dg~I~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~----~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~- 397 (432)
++++.++.+++||++......... .+...+.++..... .+++++.||.|++||++.. ..+..+..|..
T Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 263 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263 (368)
T ss_dssp EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence 999999999999998876544332 22223334444333 3999999999999999987 34555555554
Q ss_pred -----------CcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 398 -----------DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 398 -----------~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.+..+++ +|+++ +|++|+.||.|++||+++
T Consensus 264 ~~~~~~~~~~~~v~~~~~----sp~~~-~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 264 GTNTSAPQDIYAVNGIAF----HPVHG-TLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp ----CCCEEECCEEEEEE----CTTTC-CEEEEETTSCEEEEETTT
T ss_pred cccccccccccceEEEEE----ecCCC-EEEEEccCCeEEEEECCC
Confidence 3444444 89998 899999999999999864
No 119
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=5.6e-25 Score=211.06 Aligned_cols=302 Identities=13% Similarity=0.110 Sum_probs=221.3
Q ss_pred ceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeec-CCCceEEeeccCce-eeCCCCCeEEEEeCC
Q 014003 102 NVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERT-TPKNVCYHWLSGNC-VKGDECRFWHSWFCG 179 (432)
Q Consensus 102 g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~g~~d~~i~vw~~~ 179 (432)
+..+++++.||+|++||+.+..... .+..+ ....+++.+.+..+ ++++.|+.|++||+.
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~-------------------~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTA-------------------TIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEE-------------------EEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEE-------------------EeecCCCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 4568889999999999876543210 01111 11245566666655 788899999999998
Q ss_pred CCcEEEEEEecccCcEEEEEecCCCCEEEE-EeCCCcEEEEeCCCCceeEEEeCCCceeeEE--ECCCEE-EEE-cCCeE
Q 014003 180 EGFTMLAKLEGHKKAVSGIALPLRSDKLYS-GSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWV-FVG-MPNVV 254 (432)
Q Consensus 180 ~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s-~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~l-~~~-~~~~i 254 (432)
++ +.+..+..|. .+.+++|+|++++|+. ++.|++|++||+.+++.+..+.....+..+. ++++.+ +++ .++.|
T Consensus 63 ~~-~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v 140 (391)
T 1l0q_A 63 TN-NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTV 140 (391)
T ss_dssp TT-EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred CC-eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEE
Confidence 87 6777777665 9999999999998754 5567999999999999999888877776665 466665 444 58999
Q ss_pred EEEEccCCceEeecCCcCCEEEEEEcCC--EE-EEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEE
Q 014003 255 KAWHIESSAEFSLDGPVGEVYSMVVANE--ML-FAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRL 329 (432)
Q Consensus 255 ~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l 329 (432)
++||+.+++..........+.++.++++ .+ ++++.++.|++||+.++. ....+. +...+.+++|+ ++++
T Consensus 141 ~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-----~~~~~~-~~~~~~~~~~~~~g~~l 214 (391)
T 1l0q_A 141 SVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-----VIDTVK-VEAAPSGIAVNPEGTKA 214 (391)
T ss_dssp EEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEEE-CSSEEEEEEECTTSSEE
T ss_pred EEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-----EEEEEe-cCCCccceEECCCCCEE
Confidence 9999999887665555567799999988 45 677889999999998764 234443 45678889997 7888
Q ss_pred EEEe---CCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEE-EEEeCCCcEEEEEcCCCCceeEEeeccCCcc---
Q 014003 330 YSGS---MDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYL-LSCSLDNTIKVWIMTEEGNLEVAYTHNEDHG--- 400 (432)
Q Consensus 330 ~sgs---~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--- 400 (432)
++++ .++.|++||+++++.+..+..|.. +.++.++ +++| ++++.|+.|++||+.+++.+..+..+..+..
T Consensus 215 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~ 293 (391)
T 1l0q_A 215 YVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQ 293 (391)
T ss_dssp EEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSS
T ss_pred EEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccce
Confidence 8887 689999999999999999887654 6778877 6666 6778899999999999887776665543321
Q ss_pred eEEE--------eeeeCCC--------C-CcEEEEEeCCCeEEEeeCC
Q 014003 401 VLAL--------GGLNDPD--------G-NPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 401 ~~~~--------~~~~sp~--------g-~~~l~sg~~Dg~I~iwdl~ 431 (432)
.+.. ...|+.+ . ...+...+.|..+++||+.
T Consensus 294 ~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 341 (391)
T 1l0q_A 294 FIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFG 341 (391)
T ss_dssp CEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECS
T ss_pred eeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECC
Confidence 0111 0111111 1 1245666778899999985
No 120
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7e-26 Score=215.65 Aligned_cols=207 Identities=18% Similarity=0.286 Sum_probs=169.8
Q ss_pred EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCC
Q 014003 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESS 262 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~ 262 (432)
+++..+.+|.+.|++++|+|++++|++|+.||+|++||+..+.....
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~--------------------------------- 48 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI--------------------------------- 48 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE---------------------------------
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceee---------------------------------
Confidence 45667899999999999999999999999999999999874322111
Q ss_pred ceEeecCCcCCEEEEEEc----CCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe----CCEEEEEeC
Q 014003 263 AEFSLDGPVGEVYSMVVA----NEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG----GKRLYSGSM 334 (432)
Q Consensus 263 ~~~~~~~~~~~v~~l~~~----~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~sgs~ 334 (432)
..+.+|...|.+++|+ .+++++++.||.|++||+.++. ......+..|...|.+++|+ +++|++++.
T Consensus 49 --~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 123 (379)
T 3jrp_A 49 --DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR---WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 123 (379)
T ss_dssp --EEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred --eEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc---eeEeeeecCCCcceEEEEeCCCCCCCEEEEecC
Confidence 1346788999999997 3499999999999999998864 23566777899999999996 679999999
Q ss_pred CCeEEEEECCCCc--eEEEecCCCCCcEEEEEc---------------CCEEEEEeCCCcEEEEEcCCCCce----eEEe
Q 014003 335 DNTIRVWDLDTLE--AVMTLNGHTDAPMSLLCW---------------DQYLLSCSLDNTIKVWIMTEEGNL----EVAY 393 (432)
Q Consensus 335 dg~I~vwd~~~~~--~~~~~~~~~~~v~~~~~~---------------~~~l~s~s~dg~i~iwd~~~~~~~----~~~~ 393 (432)
||.|++||++++. ....+..|...+.++.++ +.+|++++.|+.|++||+++.... ..+.
T Consensus 124 d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 203 (379)
T 3jrp_A 124 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 203 (379)
T ss_dssp TSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred CCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe
Confidence 9999999999873 456778899999999987 478999999999999999877643 3444
Q ss_pred eccCCcceEEEeeeeCCC---CCcEEEEEeCCCeEEEeeCCC
Q 014003 394 THNEDHGVLALGGLNDPD---GNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 394 ~~~~~~~~~~~~~~~sp~---g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.|...+..+++ +|+ ++ +|++++.||.|++||+.+
T Consensus 204 ~h~~~v~~~~~----sp~~~~~~-~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 204 GHSDWVRDVAW----SPTVLLRS-YLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp CCSSCEEEEEE----CCCCSSSE-EEEEEETTSCEEEEEESS
T ss_pred cccCcEeEEEE----CCCCCCCC-eEEEEeCCCEEEEEeCCC
Confidence 56666666666 899 66 999999999999999863
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=4.2e-25 Score=214.90 Aligned_cols=273 Identities=14% Similarity=0.091 Sum_probs=211.8
Q ss_pred CCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCC--ceEEeeccCceeeCC
Q 014003 91 KSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHWLSGNCVKGD 168 (432)
Q Consensus 91 ~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~ 168 (432)
..+.+++|+|++.++++++.|++|++||+.++........ .....+... .+++.+....+++++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--------------~~~~~~~~~v~~~~~~~~~~~~~s~~ 188 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP--------------EKYKKKLGFVETISIPEHNELWVSQM 188 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC--------------HHHHTTCCEEEEEEEGGGTEEEEEEG
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc--------------ccccccCCceeEEEEcCCCEEEEEEC
Confidence 3457999999999999999999999998776543110000 000011111 234444556889999
Q ss_pred CCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEE-EEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--ECCCE
Q 014003 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLY-SGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPW 245 (432)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~-s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~ 245 (432)
.|+.|++||+.++ +.+..+..|...+.+++|+|++++++ +++.|++|++||+.+++.+..+.....+..+. +++..
T Consensus 189 ~d~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~ 267 (433)
T 3bws_A 189 QANAVHVFDLKTL-AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKE 267 (433)
T ss_dssp GGTEEEEEETTTC-CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSE
T ss_pred CCCEEEEEECCCc-eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCE
Confidence 9999999999887 66778889999999999999999885 45579999999999999888887776666655 46766
Q ss_pred EEEEc---------CCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeee
Q 014003 246 VFVGM---------PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLK 313 (432)
Q Consensus 246 l~~~~---------~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~ 313 (432)
++++. ++.|++||+.+++......+...+.+++++++ ++++++.++.|++||+.+++ ....+.
T Consensus 268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~-----~~~~~~ 342 (433)
T 3bws_A 268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK-----VQKSIP 342 (433)
T ss_dssp EEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE-----EEEEEE
T ss_pred EEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc-----EEEEec
Confidence 66553 78999999999987776666778899999987 55667899999999998754 344444
Q ss_pred ccccCeEEEEEe--CCEEEEEeC---------------CCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeC
Q 014003 314 GHTRPVTCLAVG--GKRLYSGSM---------------DNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL 374 (432)
Q Consensus 314 ~h~~~v~~l~~~--~~~l~sgs~---------------dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~ 374 (432)
+...+.+++|+ ++++++++. ||.|++||+++++.+..+.. ...+.+++++ +++|++++.
T Consensus 343 -~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~ 420 (433)
T 3bws_A 343 -VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDF 420 (433)
T ss_dssp -CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEET
T ss_pred -CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEEC
Confidence 66788999997 778888876 57999999999999998886 4567888887 678887775
Q ss_pred -CCcEEEEEcCC
Q 014003 375 -DNTIKVWIMTE 385 (432)
Q Consensus 375 -dg~i~iwd~~~ 385 (432)
|+.|++|++..
T Consensus 421 ~d~~i~v~~~~~ 432 (433)
T 3bws_A 421 LDHQIRVYRRDG 432 (433)
T ss_dssp TTTEEEEEEETT
T ss_pred CCCeEEEEEecC
Confidence 99999999863
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.1e-24 Score=211.50 Aligned_cols=235 Identities=11% Similarity=0.088 Sum_probs=184.4
Q ss_pred cCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc---eeEEEeCCC----------------------------------
Q 014003 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ---SASVINLGA---------------------------------- 234 (432)
Q Consensus 192 ~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~---~~~~~~~~~---------------------------------- 234 (432)
..++.+++|+++|++|+++ .++.|++||+.+++ .+..+....
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4578999999999976666 57899999999998 665555321
Q ss_pred ---------------------ceeeEE--ECCCEE-EEE-cCCeEEEEEcc--CCceEee---cCCcCCEEEEEEcCC--
Q 014003 235 ---------------------EVGSLI--CEGPWV-FVG-MPNVVKAWHIE--SSAEFSL---DGPVGEVYSMVVANE-- 282 (432)
Q Consensus 235 ---------------------~~~~~~--~~~~~l-~~~-~~~~i~vwd~~--~~~~~~~---~~~~~~v~~l~~~~~-- 282 (432)
.+.++. +++.++ +++ .|+.|++||+. ++..... ..+...|.+++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 244444 467775 555 78999999998 6665433 266789999999988
Q ss_pred EEEEEECCCcEEEEECCCCCCCccc-cceeeeccccCeEEEEEe-----CCEEEEEeCCCeEEEEECCCCceEEE-ecCC
Q 014003 283 MLFAGAQDGNILVWKGIPNTQNPFQ-LAALLKGHTRPVTCLAVG-----GKRLYSGSMDNTIRVWDLDTLEAVMT-LNGH 355 (432)
Q Consensus 283 ~l~~g~~dg~i~~wd~~~~~~~~~~-~~~~~~~h~~~v~~l~~~-----~~~l~sgs~dg~I~vwd~~~~~~~~~-~~~~ 355 (432)
+|++|+.+|.|++|++.+.... . ....+.+|...|++++|+ +++|++|+.|+.|++||+++++++.. +.+|
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h 240 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEE--KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH 240 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCS--SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred EEEEEeCCCcEEEEecCCcccc--cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence 9999999999999999876531 1 334677899999999996 34899999999999999999999888 5689
Q ss_pred CCCcEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceeEEeeccC---------------------CcceEEEeeeeCCCCC
Q 014003 356 TDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE---------------------DHGVLALGGLNDPDGN 413 (432)
Q Consensus 356 ~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~sp~g~ 413 (432)
...|.++.++ +++|++++.|+.|++||+.+++.+..+..+.. ..........++|+++
T Consensus 241 ~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 241 KHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp SSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred CCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 9999999996 88999999999999999999987777653310 0011122334589999
Q ss_pred cEEEEEe-CCCeEEEeeC
Q 014003 414 PVLICSC-NDDSVHLYEL 430 (432)
Q Consensus 414 ~~l~sg~-~Dg~I~iwdl 430 (432)
+|++++ .|+.|++|++
T Consensus 321 -~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 321 -FVAFFVEATKCIIILEM 337 (450)
T ss_dssp -EEEEEETTCSEEEEEEE
T ss_pred -EEEEEECCCCeEEEEEe
Confidence 677776 8999999998
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=2.1e-26 Score=221.71 Aligned_cols=265 Identities=9% Similarity=0.016 Sum_probs=164.9
Q ss_pred CCCCCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCC--ceEEee-----
Q 014003 87 SNHKKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPK--NVCYHW----- 159 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----- 159 (432)
.+|...+....+++++.+||+++.|++|+||++..+...... . ...+..|... .+++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~--~------------~~~~~gH~~~v~~v~~~p~~~~~ 151 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQH--V------------LGGKSGHHNFVNDIDIADVYSAD 151 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEE--E------------ECTTTSCSSCEEEEEEEEEECTT
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceee--e------------ecccCCCCCceEEEEEccccccc
Confidence 446666677778999999999999999999987765321000 0 0001112222 344444
Q ss_pred ---ccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCC-CEEEEEeCCCcEEEEeCCCCceeEEEeCCCc
Q 014003 160 ---LSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSASVINLGAE 235 (432)
Q Consensus 160 ---~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~ 235 (432)
.+..+++|+.|++|++||+.++ .++..+.+|.++|.+++|+|++ .+|++++.|++|++||+.+++..........
T Consensus 152 ~~~d~~~las~s~D~tv~~Wd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~ 230 (393)
T 4gq1_A 152 NRLAEQVIASVGDDCTLIIWRLTDE-GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL 230 (393)
T ss_dssp CSEEEEEEEEEETTSEEEEEEEETT-EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------
T ss_pred cCCCCCEEEEEECCCeEEEEECCCC-ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC
Confidence 4458999999999999999877 5667778899999999999987 5899999999999999998876654432211
Q ss_pred eeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEc-CC--EEEEEECCCcEEEEECCCCCCCccccceee
Q 014003 236 VGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVA-NE--MLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (432)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~-~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~ 312 (432)
... +-.+..............++...+.++.+. ++ .+++++.|+.+++||+..+.. ...+
T Consensus 231 ~~~------------~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~-----~~~l 293 (393)
T 4gq1_A 231 VKN------------PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND-----YNEI 293 (393)
T ss_dssp CSC------------CCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------
T ss_pred ccc------------ceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC-----CceE
Confidence 000 000000000011112335677888888876 44 899999999999999987643 1222
Q ss_pred eccccCe-------------------EEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCE
Q 014003 313 KGHTRPV-------------------TCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQY 368 (432)
Q Consensus 313 ~~h~~~v-------------------~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~ 368 (432)
..|...+ ..+.+. +.++++|+.||.|++||+.+++++..+.+|..+|.+++|+ |++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~ 373 (393)
T 4gq1_A 294 SDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSH 373 (393)
T ss_dssp ----------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSE
T ss_pred eeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCE
Confidence 2222222 122221 3467788899999999999999999998999999999999 799
Q ss_pred EEEEeCCCcEEEEEcC
Q 014003 369 LLSCSLDNTIKVWIMT 384 (432)
Q Consensus 369 l~s~s~dg~i~iwd~~ 384 (432)
||+++.|| +.+|.+.
T Consensus 374 LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 374 LAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEEESSE-EEEEEEG
T ss_pred EEEEeCCC-eEEEEEe
Confidence 99998766 6666553
No 124
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=1.7e-24 Score=202.93 Aligned_cols=209 Identities=12% Similarity=0.198 Sum_probs=169.3
Q ss_pred EEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceE
Q 014003 186 AKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEF 265 (432)
Q Consensus 186 ~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~ 265 (432)
..+.+|.+.|++++|+|++++|++|+.||+|++||+.++...... ..
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---------------------------------~~ 51 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWEL---------------------------------SD 51 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEE---------------------------------EE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCccee---------------------------------cc
Confidence 346899999999999999999999999999999999876432111 11
Q ss_pred eecCCcCCEEEEEEcC---C-EEEEEECCCcEEEEECCCCCCC----ccccceeeeccccCeEEEEEe----CCEEEEEe
Q 014003 266 SLDGPVGEVYSMVVAN---E-MLFAGAQDGNILVWKGIPNTQN----PFQLAALLKGHTRPVTCLAVG----GKRLYSGS 333 (432)
Q Consensus 266 ~~~~~~~~v~~l~~~~---~-~l~~g~~dg~i~~wd~~~~~~~----~~~~~~~~~~h~~~v~~l~~~----~~~l~sgs 333 (432)
.+.+|...|.+++|++ . ++++++.||.|++||+..+... ..+....+..|...|.+++|+ +++|++++
T Consensus 52 ~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 131 (351)
T 3f3f_A 52 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG 131 (351)
T ss_dssp EEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred eeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec
Confidence 3457889999999987 3 9999999999999999876421 124567788899999999996 67999999
Q ss_pred CCCeEEEEECCCCceEEEec-------------CCCCCcEEEEEc-----CCEEEEEeCCCcEEEEEcCCCCc--eeEEe
Q 014003 334 MDNTIRVWDLDTLEAVMTLN-------------GHTDAPMSLLCW-----DQYLLSCSLDNTIKVWIMTEEGN--LEVAY 393 (432)
Q Consensus 334 ~dg~I~vwd~~~~~~~~~~~-------------~~~~~v~~~~~~-----~~~l~s~s~dg~i~iwd~~~~~~--~~~~~ 393 (432)
.||.|++||+++++.+..+. .|...+.++.+. +.++++++.|+.+.+|+...... +..+.
T Consensus 132 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (351)
T 3f3f_A 132 NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP 211 (351)
T ss_dssp TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC
T ss_pred CCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC
Confidence 99999999999887654432 577788999886 67999999999998888776654 44455
Q ss_pred eccCCcceEEEeeeeCCCCC---cEEEEEeCCCeEEEeeCC
Q 014003 394 THNEDHGVLALGGLNDPDGN---PVLICSCNDDSVHLYELP 431 (432)
Q Consensus 394 ~~~~~~~~~~~~~~~sp~g~---~~l~sg~~Dg~I~iwdl~ 431 (432)
.|...+..+++ +|++. .+|++|+.||.|++||+.
T Consensus 212 ~h~~~i~~~~~----~p~~~~~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 212 GHKSLIRSISW----APSIGRWYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp CCCSCEEEEEE----CCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred CCCcceeEEEE----CCCCCCcceEEEEEcCCCeEEEEeCC
Confidence 67777766666 89982 399999999999999975
No 125
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.93 E-value=1.2e-24 Score=212.10 Aligned_cols=216 Identities=19% Similarity=0.257 Sum_probs=174.0
Q ss_pred EEEEecccCcEEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCc
Q 014003 185 LAKLEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSA 263 (432)
Q Consensus 185 ~~~l~~H~~~V~~l~~~~~-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~ 263 (432)
.....+|.+.|++++|+|+ +.+|++++.||.|++||+.+...... .. .....
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~-------------------------~~~~~ 173 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PS-------------------------GECQP 173 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TT-------------------------CCCCC
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--cc-------------------------ccCCC
Confidence 4556789999999999997 78999999999999999975311000 00 00011
Q ss_pred eEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCC--ccccceeeeccccCeEEEEEe---CCEEEEEeCC
Q 014003 264 EFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQN--PFQLAALLKGHTRPVTCLAVG---GKRLYSGSMD 335 (432)
Q Consensus 264 ~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~--~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~d 335 (432)
...+.+|...+.+++|+++ +|++|+.||.|++||+..+... .......+.+|...|.+++|+ +.+|++++.|
T Consensus 174 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d 253 (430)
T 2xyi_A 174 DLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253 (430)
T ss_dssp SEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT
T ss_pred cEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC
Confidence 2244678889999999987 8999999999999999874321 112345677899999999996 6799999999
Q ss_pred CeEEEEECCCC---ceEEEecCCCCCcEEEEEc--C-CEEEEEeCCCcEEEEEcCC-CCceeEEeeccCCcceEEEeeee
Q 014003 336 NTIRVWDLDTL---EAVMTLNGHTDAPMSLLCW--D-QYLLSCSLDNTIKVWIMTE-EGNLEVAYTHNEDHGVLALGGLN 408 (432)
Q Consensus 336 g~I~vwd~~~~---~~~~~~~~~~~~v~~~~~~--~-~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 408 (432)
|.|++||++++ +++..+..|...+.+++++ + .+|++++.||.|++||+++ ...+..+..|...+..+.+
T Consensus 254 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~---- 329 (430)
T 2xyi_A 254 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW---- 329 (430)
T ss_dssp SEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEE----
T ss_pred CeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEE----
Confidence 99999999987 6788888999999999998 3 4799999999999999998 4567777778887777666
Q ss_pred CCCCCcEEEEEeCCCeEEEeeCC
Q 014003 409 DPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 409 sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+|+++.+|++++.||.|+|||+.
T Consensus 330 sp~~~~~l~s~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 330 SPHNETILASSGTDRRLHVWDLS 352 (430)
T ss_dssp CSSCTTEEEEEETTSCCEEEEGG
T ss_pred CCCCCCEEEEEeCCCcEEEEeCC
Confidence 89998789999999999999985
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=2.6e-23 Score=208.03 Aligned_cols=311 Identities=10% Similarity=0.058 Sum_probs=224.1
Q ss_pred CCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeee-ecCCCceEEeeccCceeeCCCCCeEE
Q 014003 96 YNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLE-RTTPKNVCYHWLSGNCVKGDECRFWH 174 (432)
Q Consensus 96 ~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~d~~i~ 174 (432)
.+++|+++++++++.|++|.+||....... ..+. ......+.+.+.+..+++++.|+.|.
T Consensus 143 ~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~-------------------~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~ 203 (543)
T 1nir_A 143 NDLDLPNLFSVTLRDAGQIALVDGDSKKIV-------------------KVIDTGYAVHISRMSASGRYLLVIGRDARID 203 (543)
T ss_dssp SCCCGGGEEEEEEGGGTEEEEEETTTCCEE-------------------EEEECSTTEEEEEECTTSCEEEEEETTSEEE
T ss_pred cccCCCCEEEEEEcCCCeEEEEECCCceEE-------------------EEEecCcccceEEECCCCCEEEEECCCCeEE
Confidence 358999999999999999999986654321 0011 11123566778888899999999999
Q ss_pred EEeC--CCCcEEEEEEecccCcEEEEEecC----CCCEEEEEeC-CCcEEEEeCCCCceeEEEeCCC------------c
Q 014003 175 SWFC--GEGFTMLAKLEGHKKAVSGIALPL----RSDKLYSGSR-DGTVQLWDCHTGQSASVINLGA------------E 235 (432)
Q Consensus 175 vw~~--~~~~~~~~~l~~H~~~V~~l~~~~----~~~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~~------------~ 235 (432)
+||+ .+. +.+.++.. ...+..++|+| +|++|++++. +++|.+||..+++++..+.... .
T Consensus 204 v~D~~~~t~-~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~ 281 (543)
T 1nir_A 204 MIDLWAKEP-TKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR 281 (543)
T ss_dssp EEETTSSSC-EEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred EEECcCCCC-cEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCc
Confidence 9999 665 77788874 56689999999 9999999985 8999999999999998887521 3
Q ss_pred eeeEE--ECCCEEEEE--cCCeEEEEEccCCceEe--ecCCcCCEEEEEEcCC--EEEE-EECCCcEEEEECCCCCCCcc
Q 014003 236 VGSLI--CEGPWVFVG--MPNVVKAWHIESSAEFS--LDGPVGEVYSMVVANE--MLFA-GAQDGNILVWKGIPNTQNPF 306 (432)
Q Consensus 236 ~~~~~--~~~~~l~~~--~~~~i~vwd~~~~~~~~--~~~~~~~v~~l~~~~~--~l~~-g~~dg~i~~wd~~~~~~~~~ 306 (432)
+..+. +++..++++ .++.|.+||..+.+... ...+...+..+.|+|+ ++++ +..+++|.+||+.+++
T Consensus 282 v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~---- 357 (543)
T 1nir_A 282 VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR---- 357 (543)
T ss_dssp EEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE----
T ss_pred eEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe----
Confidence 34444 345554443 67899999998765322 2234556778899988 5554 4568999999999874
Q ss_pred ccceeeec----cccCeEEEEE-e-CCEEEEEe-CCCeEEEEECCC-------CceEEEecCCCCCcEEEEEc--CCEEE
Q 014003 307 QLAALLKG----HTRPVTCLAV-G-GKRLYSGS-MDNTIRVWDLDT-------LEAVMTLNGHTDAPMSLLCW--DQYLL 370 (432)
Q Consensus 307 ~~~~~~~~----h~~~v~~l~~-~-~~~l~sgs-~dg~I~vwd~~~-------~~~~~~~~~~~~~v~~~~~~--~~~l~ 370 (432)
+...+.. |......+.. + +..++++. .|++|.+||+.+ +++++++.+|...+..+.++ +++|+
T Consensus 358 -l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~ 436 (543)
T 1nir_A 358 -LSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLY 436 (543)
T ss_dssp -EEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEE
T ss_pred -EEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEE
Confidence 3444443 5444444432 2 55566665 589999999998 89999999998888888877 78999
Q ss_pred EEe-------CCCcEEEEEcCCCCceeEEe-ecc----CCcceEEEeeeeCCCCCcEEEEEe----CCCeEEEeeCCC
Q 014003 371 SCS-------LDNTIKVWIMTEEGNLEVAY-THN----EDHGVLALGGLNDPDGNPVLICSC----NDDSVHLYELPS 432 (432)
Q Consensus 371 s~s-------~dg~i~iwd~~~~~~~~~~~-~~~----~~~~~~~~~~~~sp~g~~~l~sg~----~Dg~I~iwdl~s 432 (432)
+++ .+++|.+||+.+.+...... ... .......+...|+|+|+.++++.. .|+.|.|||.+|
T Consensus 437 v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 437 VDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp ECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred EecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence 887 27899999999988763332 100 011223344556999996665532 589999999875
No 127
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.6e-24 Score=223.10 Aligned_cols=205 Identities=18% Similarity=0.280 Sum_probs=166.3
Q ss_pred EEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCce
Q 014003 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAE 264 (432)
Q Consensus 185 ~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~ 264 (432)
+..+.+|.+.|++++|+|++++|++|+.||+|++||+.++.....
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~----------------------------------- 46 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI----------------------------------- 46 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEE-----------------------------------
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccc-----------------------------------
Confidence 456789999999999999999999999999999999874322111
Q ss_pred EeecCCcCCEEEEEEcC----CEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe----CCEEEEEeCCC
Q 014003 265 FSLDGPVGEVYSMVVAN----EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG----GKRLYSGSMDN 336 (432)
Q Consensus 265 ~~~~~~~~~v~~l~~~~----~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg 336 (432)
..+.+|...|.++.|++ +++++|+.||.|++||+.++. ......+.+|...|++++|+ ++.+++|+.||
T Consensus 47 ~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~---~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR---WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp EEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred eeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc---ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 13467889999999974 389999999999999998864 23566778899999999996 67999999999
Q ss_pred eEEEEECCCC--ceEEEecCCCCCcEEEEEc---------------CCEEEEEeCCCcEEEEEcCCCCc----eeEEeec
Q 014003 337 TIRVWDLDTL--EAVMTLNGHTDAPMSLLCW---------------DQYLLSCSLDNTIKVWIMTEEGN----LEVAYTH 395 (432)
Q Consensus 337 ~I~vwd~~~~--~~~~~~~~~~~~v~~~~~~---------------~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~ 395 (432)
.|++||++++ .....+.+|...|.++.++ +.+|++++.||.|++||+++... ...+..|
T Consensus 124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h 203 (753)
T 3jro_A 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (753)
T ss_dssp EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence 9999999987 3456678899999999986 36899999999999999988743 3444567
Q ss_pred cCCcceEEEeeeeCCC---CCcEEEEEeCCCeEEEeeCCC
Q 014003 396 NEDHGVLALGGLNDPD---GNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 396 ~~~~~~~~~~~~~sp~---g~~~l~sg~~Dg~I~iwdl~s 432 (432)
...+..+++ +|+ ++ ++++|+.||.|++||+.+
T Consensus 204 ~~~V~~l~~----sp~~~~~~-~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 204 SDWVRDVAW----SPTVLLRS-YLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp SSCEEEEEE----CCCCSSSE-EEEEEESSSCEEEEEESS
T ss_pred CCcEEEEEe----ccCCCCCC-EEEEEecCCEEEEecCCC
Confidence 777766666 899 66 999999999999999763
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=1.8e-21 Score=194.63 Aligned_cols=265 Identities=12% Similarity=0.077 Sum_probs=203.1
Q ss_pred EeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeC--CCCceeEEEeCCC
Q 014003 157 YHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDC--HTGQSASVINLGA 234 (432)
Q Consensus 157 ~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~--~~~~~~~~~~~~~ 234 (432)
+.+....+++++.|+.|.+||..++ +.+.++..+.. +..++|+|+|++|++++.|++|.+||+ .+++++..+....
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~-~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~ 222 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSK-KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI 222 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTC-CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCc-eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCC
Confidence 4445557889999999999999888 67788874333 899999999999999999999999999 8899998888776
Q ss_pred ceeeEE--E----CCCEEEEE--cCCeEEEEEccCCceEeec-C-----------CcCCEEEEEEcCC---EEEEEECCC
Q 014003 235 EVGSLI--C----EGPWVFVG--MPNVVKAWHIESSAEFSLD-G-----------PVGEVYSMVVANE---MLFAGAQDG 291 (432)
Q Consensus 235 ~~~~~~--~----~~~~l~~~--~~~~i~vwd~~~~~~~~~~-~-----------~~~~v~~l~~~~~---~l~~g~~dg 291 (432)
....+. + ++++++++ .++.|.+||..+.+.+... . +...+.++.++++ ++++...++
T Consensus 223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g 302 (543)
T 1nir_A 223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG 302 (543)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC
Confidence 665554 5 78888766 4899999999988765322 1 1236889999886 677788899
Q ss_pred cEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEe-CCCeEEEEECCCCceEEEecC----CCCCcEEEEE
Q 014003 292 NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGS-MDNTIRVWDLDTLEAVMTLNG----HTDAPMSLLC 364 (432)
Q Consensus 292 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs-~dg~I~vwd~~~~~~~~~~~~----~~~~v~~~~~ 364 (432)
.|.+||+.+.+.. . +..+ .+...+..+.|+ ++++++++ .+++|.+||+++++++..+.. |.+....+..
T Consensus 303 ~i~vvd~~~~~~l--~-~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~ 378 (543)
T 1nir_A 303 KVLLVNYKDIDNL--T-VTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH 378 (543)
T ss_dssp EEEEEECTTSSSC--E-EEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEE
T ss_pred eEEEEEecCCCcc--e-eEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCC
Confidence 9999999876431 1 1233 345567788887 88776554 589999999999999988874 5544444432
Q ss_pred -c-CCEEEEEe-CCCcEEEEEcCC-------CCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEe-------CCCeEEE
Q 014003 365 -W-DQYLLSCS-LDNTIKVWIMTE-------EGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC-------NDDSVHL 427 (432)
Q Consensus 365 -~-~~~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~-------~Dg~I~i 427 (432)
. +..++++. .|++|.+||+.+ .+.+..+..+......+.+ +|+|+ .|++++ .+++|.+
T Consensus 379 p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~----~pdg~-~l~v~~~~~~~~~~~~~v~v 453 (543)
T 1nir_A 379 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKT----HPKSS-HLYVDTTFNPDARISQSVAV 453 (543)
T ss_dssp TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC----CTTCC-EEEECCTTCSSHHHHTCEEE
T ss_pred CCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEc----CCCCC-cEEEecCCCCCcccCceEEE
Confidence 2 45666665 689999999998 6777888777766555555 89999 777776 2789999
Q ss_pred eeCCC
Q 014003 428 YELPS 432 (432)
Q Consensus 428 wdl~s 432 (432)
||+.+
T Consensus 454 ~d~~~ 458 (543)
T 1nir_A 454 FDLKN 458 (543)
T ss_dssp EETTC
T ss_pred EECCC
Confidence 99875
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=1.2e-21 Score=189.90 Aligned_cols=227 Identities=10% Similarity=-0.075 Sum_probs=177.2
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCC---cEEEEeCCCCceeEEEeCCCceeeEE--ECCCE
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDG---TVQLWDCHTGQSASVINLGAEVGSLI--CEGPW 245 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg---~v~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~ 245 (432)
+.|++||++.. ....+.+|...|.+++|+|+|++|++++.|+ +|++||+.+++......+...+.++. ++++.
T Consensus 159 ~~i~i~d~~g~--~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~ 236 (415)
T 2hqs_A 159 YELRVSDYDGY--NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSK 236 (415)
T ss_dssp EEEEEEETTSC--SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSE
T ss_pred ceEEEEcCCCC--CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCE
Confidence 79999999754 3567788999999999999999999999885 99999999998876655555555554 57886
Q ss_pred EE-EE-cC--CeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEEC-CC--cEEEEECCCCCCCccccceeeeccc
Q 014003 246 VF-VG-MP--NVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQ-DG--NILVWKGIPNTQNPFQLAALLKGHT 316 (432)
Q Consensus 246 l~-~~-~~--~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~-dg--~i~~wd~~~~~~~~~~~~~~~~~h~ 316 (432)
++ ++ .+ ..|++||+.+++...+..+...+.++.|+|+ .|++++. ++ .|.+||+.++. ...+..+.
T Consensus 237 la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~------~~~l~~~~ 310 (415)
T 2hqs_A 237 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA------PQRITWEG 310 (415)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC------CEECCCSS
T ss_pred EEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC------EEEEecCC
Confidence 66 44 23 4599999999988888888899999999998 6777765 45 67777887764 23344566
Q ss_pred cCeEEEEEe--CCEEEEEeCC---CeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCC---cEEEEEcCCC
Q 014003 317 RPVTCLAVG--GKRLYSGSMD---NTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDN---TIKVWIMTEE 386 (432)
Q Consensus 317 ~~v~~l~~~--~~~l~sgs~d---g~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg---~i~iwd~~~~ 386 (432)
..+.+++|+ |++|++++.+ ..|++||+++++.. .+..+. .+.++.|+ +++|++++.++ .|.+||+. +
T Consensus 311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g 387 (415)
T 2hqs_A 311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-G 387 (415)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-S
T ss_pred CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-C
Confidence 678888997 8888888764 58999999998874 555554 78888887 78888888877 79999986 4
Q ss_pred CceeEEeeccCCcceEEEeeeeCCCC
Q 014003 387 GNLEVAYTHNEDHGVLALGGLNDPDG 412 (432)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~sp~g 412 (432)
+....+..+...+..++| +|.-
T Consensus 388 ~~~~~l~~~~~~v~~~~~----~~~~ 409 (415)
T 2hqs_A 388 RFKARLPATDGQVKFPAW----SPYL 409 (415)
T ss_dssp CCEEECCCSSSEEEEEEE----CCCC
T ss_pred CcEEEeeCCCCCCcCCcc----cccc
Confidence 556667777777766666 6754
No 130
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=9e-20 Score=170.58 Aligned_cols=265 Identities=8% Similarity=0.014 Sum_probs=186.4
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeC-CCcEEEEeCCCCce-eEEEeCCCceee-E
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR-DGTVQLWDCHTGQS-ASVINLGAEVGS-L 239 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~-Dg~v~iWd~~~~~~-~~~~~~~~~~~~-~ 239 (432)
.++++..++.|.+||..++ +.+..+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+........ +
T Consensus 12 ~~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 89 (331)
T 3u4y_A 12 GIVVEQHLRRISFFSTDTL-EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADV 89 (331)
T ss_dssp EEEEEGGGTEEEEEETTTC-CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCE
T ss_pred EEEEecCCCeEEEEeCccc-ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccce
Confidence 4678888999999999887 5566666667777 9999999997776666 89999999999987 666665544433 3
Q ss_pred --EECCCEEEEEcCC----eEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCc-EEEEECCCCCCCccccc
Q 014003 240 --ICEGPWVFVGMPN----VVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGN-ILVWKGIPNTQNPFQLA 309 (432)
Q Consensus 240 --~~~~~~l~~~~~~----~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~-i~~wd~~~~~~~~~~~~ 309 (432)
.+++++++++..+ .|.+||+.+++............+++++|+ ++++...++. |.+|++...... ....
T Consensus 90 ~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~-~~~~ 168 (331)
T 3u4y_A 90 DITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVL-FDTG 168 (331)
T ss_dssp EECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCE-EEEE
T ss_pred EECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcE-eecC
Confidence 3678888766544 899999999887765555666789999998 4455566688 999998864321 0000
Q ss_pred eeeeccccCeEEEEEe--CCEEEE-EeCCCeEEEEECCCCce---EEEecCCCCCcEEEEEc--CCEEEEEe-CCCcEEE
Q 014003 310 ALLKGHTRPVTCLAVG--GKRLYS-GSMDNTIRVWDLDTLEA---VMTLNGHTDAPMSLLCW--DQYLLSCS-LDNTIKV 380 (432)
Q Consensus 310 ~~~~~h~~~v~~l~~~--~~~l~s-gs~dg~I~vwd~~~~~~---~~~~~~~~~~v~~~~~~--~~~l~s~s-~dg~i~i 380 (432)
............++|+ ++++++ +..++.|++||+++++. +..+..+ ..+..+.++ ++++++++ .++.|.+
T Consensus 169 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~ 247 (331)
T 3u4y_A 169 QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFN 247 (331)
T ss_dssp EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEE
T ss_pred CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEE
Confidence 1112334557888887 776555 45689999999999998 7777744 455677776 67666554 5788999
Q ss_pred EEcCCCCc--eeEEeec----cCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 381 WIMTEEGN--LEVAYTH----NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 381 wd~~~~~~--~~~~~~~----~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
||+.+++. +..+... ...... .-...|+|+|+.+++++..++.|.+||+.+
T Consensus 248 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 248 FNQLSGTLSFVKSFGHGLLIDPRPLFG-ANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp EETTTTEEEEEEEEECCCCCCCGGGTT-CCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred EECCCCceeeecccccccccCCCCccc-ccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 99988765 2222221 111111 011234899996666777788999999863
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.87 E-value=4.6e-20 Score=178.66 Aligned_cols=249 Identities=9% Similarity=-0.029 Sum_probs=184.0
Q ss_pred CCC----eEEEEeC--CCCcEE-EEEEecccCcEEEEEecC--------------CCCEEEEEeCC------CcEEEEeC
Q 014003 169 ECR----FWHSWFC--GEGFTM-LAKLEGHKKAVSGIALPL--------------RSDKLYSGSRD------GTVQLWDC 221 (432)
Q Consensus 169 ~d~----~i~vw~~--~~~~~~-~~~l~~H~~~V~~l~~~~--------------~~~~l~s~s~D------g~v~iWd~ 221 (432)
.+| .+++||+ .++... ...+.+|...+..+++.+ .+..++.++.+ ++|++||+
T Consensus 87 ~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~ 166 (415)
T 2hqs_A 87 PDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDY 166 (415)
T ss_dssp TTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEET
T ss_pred CCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcC
Confidence 456 8999999 777432 256889999888888764 25666666654 79999999
Q ss_pred CCCceeEEEeCCCceeeEE--ECCCEEEEE-cC---CeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEE-EEECCCc
Q 014003 222 HTGQSASVINLGAEVGSLI--CEGPWVFVG-MP---NVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLF-AGAQDGN 292 (432)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~--~~~~~l~~~-~~---~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~-~g~~dg~ 292 (432)
+.+.......+...+.++. ++++.++.+ .+ ..|++||+++++...+..+...+.+++|+|+ .|+ +++.++.
T Consensus 167 ~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~ 246 (415)
T 2hqs_A 167 DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGS 246 (415)
T ss_dssp TSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred CCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCC
Confidence 8655544444555665554 577777654 44 3999999999998888888889999999998 555 6666655
Q ss_pred --EEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeC-CC--eEEEEECCCCceEEEecCCCCCcEEEEEc
Q 014003 293 --ILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM-DN--TIRVWDLDTLEAVMTLNGHTDAPMSLLCW 365 (432)
Q Consensus 293 --i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~-dg--~I~vwd~~~~~~~~~~~~~~~~v~~~~~~ 365 (432)
|++||+.+++ ...+..|...+.+++|+ +++|++++. ++ .|.+||+.+++. ..+..+...+.++.++
T Consensus 247 ~~i~~~d~~~~~------~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 319 (415)
T 2hqs_A 247 LNLYVMDLASGQ------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVS 319 (415)
T ss_dssp CEEEEEETTTCC------EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEEC
T ss_pred ceEEEEECCCCC------EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEEC
Confidence 9999998764 34566788889999997 888888876 44 788889988774 4455666778888887
Q ss_pred --CCEEEEEeCC---CcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCC---eEEEeeCC
Q 014003 366 --DQYLLSCSLD---NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD---SVHLYELP 431 (432)
Q Consensus 366 --~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg---~I~iwdl~ 431 (432)
+++|++++.+ ..|.+||+.+++.. .+..+. .+..++ |+|+|+ .|++++.|+ .|++||+.
T Consensus 320 pdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~----~spdg~-~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 320 SDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPS----LAPNGT-MVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp TTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEE----ECTTSS-EEEEEEEETTEEEEEEEETT
T ss_pred CCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeE----EcCCCC-EEEEEEcCCCccEEEEEECC
Confidence 7888888764 58999999887653 333332 444444 489999 666666665 79999875
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.86 E-value=6.8e-21 Score=198.13 Aligned_cols=327 Identities=9% Similarity=-0.027 Sum_probs=212.9
Q ss_pred CCCCCCCCCCCceecCCCCC-CC-----cccccccCCCCCCCCCCcc-c-----ccCCC-CCCCCCceeeeecCCCceEE
Q 014003 91 KSPPSYNCPKNNVRVSSGSE-EG-----TTHVQNRENPDRTVPNKSS-L-----DCSTG-SDDSGSKRTLERTTPKNVCY 157 (432)
Q Consensus 91 ~~v~~~~~s~~g~~las~~~-Dg-----~i~iW~~~~~~~~~~~~~~-~-----~~~~~-~~~~~~~~~~~~~~~~~~~~ 157 (432)
..|.+++|||||++||+++. || +|++|++.++......... . .++.. .......+.........+++
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 35788999999999999998 88 8999998776421100000 0 00000 00000000000011246677
Q ss_pred eeccCceeeCCCCCeEEEEeCCCCc-EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCc-
Q 014003 158 HWLSGNCVKGDECRFWHSWFCGEGF-TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE- 235 (432)
Q Consensus 158 ~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~- 235 (432)
++.+..+++++. +.|++||+.++. .....+..|...+..++|+|||++|+.++. +.|.+||+.+++..........
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~ 194 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTT 194 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSS
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccc
Confidence 888887877775 999999997751 024457788899999999999999999884 6899999998876655443321
Q ss_pred ------------------eeeEEECCCEEEEE-cCC---------------------------------eEEEEEccC-C
Q 014003 236 ------------------VGSLICEGPWVFVG-MPN---------------------------------VVKAWHIES-S 262 (432)
Q Consensus 236 ------------------~~~~~~~~~~l~~~-~~~---------------------------------~i~vwd~~~-~ 262 (432)
...+.++++.|+.+ .++ .|.+||+.+ +
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 12344677766554 443 788899988 7
Q ss_pred ceEeec---CCcCCEEEEEEcCC--EEEEEEC-----CCcEEEEECCCCCCCccccceeeecccc----CeEEEEEe--C
Q 014003 263 AEFSLD---GPVGEVYSMVVANE--MLFAGAQ-----DGNILVWKGIPNTQNPFQLAALLKGHTR----PVTCLAVG--G 326 (432)
Q Consensus 263 ~~~~~~---~~~~~v~~l~~~~~--~l~~g~~-----dg~i~~wd~~~~~~~~~~~~~~~~~h~~----~v~~l~~~--~ 326 (432)
+..... .+...+..+.| ++ .|++++. +..|++||+.+++. ...+..+.. .+..++|+ |
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~-----~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 275 QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ-----RVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE-----EEEEEEECSSCCCCCSCCEECTTS
T ss_pred ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce-----EEEEEcCCCCcCCcCCceEECCCC
Confidence 755443 46677889999 88 6665543 56899999988752 333333332 34567786 7
Q ss_pred CEEEEEeCCCeEEEEECC-CCceEEEecCCCCCcEEEE-Ec--CCEEE-EEeCCC--cEEEEEcCC-CCceeEEeeccCC
Q 014003 327 KRLYSGSMDNTIRVWDLD-TLEAVMTLNGHTDAPMSLL-CW--DQYLL-SCSLDN--TIKVWIMTE-EGNLEVAYTHNED 398 (432)
Q Consensus 327 ~~l~sgs~dg~I~vwd~~-~~~~~~~~~~~~~~v~~~~-~~--~~~l~-s~s~dg--~i~iwd~~~-~~~~~~~~~~~~~ 398 (432)
+++++++.||.++||.+. +++ ...+..|...+..+. ++ ++.|+ +++.++ .++||++.. ++....+.. ...
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~ 426 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APG 426 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCS
T ss_pred eEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCC
Confidence 889999999988888765 455 788888888787763 66 56665 555555 899999875 333444433 333
Q ss_pred cceEEEeeeeCCCCCcEEEEEeCC---CeEEEeeCC
Q 014003 399 HGVLALGGLNDPDGNPVLICSCND---DSVHLYELP 431 (432)
Q Consensus 399 ~~~~~~~~~~sp~g~~~l~sg~~D---g~I~iwdl~ 431 (432)
+. ...|+|||+.++++.+.. ..+.+|++.
T Consensus 427 ~~----~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 427 MH----SASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp EE----EEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred ce----EEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 33 344599999555555443 457777753
No 133
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=3.4e-19 Score=162.89 Aligned_cols=246 Identities=9% Similarity=0.000 Sum_probs=177.7
Q ss_pred eCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCC-CceeEEEeCC--Ccee--eEE
Q 014003 166 KGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT-GQSASVINLG--AEVG--SLI 240 (432)
Q Consensus 166 ~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~--~~~~--~~~ 240 (432)
.++.++.|++||+.++ +.. .+..|...|.+++|+|++++|++++ ++.|.+||+.+ ++........ ..+. .+.
T Consensus 17 ~~~~~~~i~~~d~~~~-~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR-KMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEETTTT-EEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeCCCC-cee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 4578899999999887 433 5667999999999999999999987 78999999999 8776655433 2333 344
Q ss_pred ECCCEEEEEc-----CCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEE-EEECCCcEEEEECCCCCCCccccceee
Q 014003 241 CEGPWVFVGM-----PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLF-AGAQDGNILVWKGIPNTQNPFQLAALL 312 (432)
Q Consensus 241 ~~~~~l~~~~-----~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~-~g~~dg~i~~wd~~~~~~~~~~~~~~~ 312 (432)
+++..++.+. ...|..+++.++....+..+ ..+..+.|+|+ .++ ++..++.+.+|++..... ....+
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~----~~~~~ 168 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG----VETRL 168 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC----CEEEC
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCC----cceEc
Confidence 5788777664 24555556666665444443 34888999988 454 788899999999754322 23455
Q ss_pred eccccCeEEEEEe--CCEEEEEe-CCCeEEEEECC-CCceEEEecCCCCCcEEEEEc--CCEEEEEeCC-----------
Q 014003 313 KGHTRPVTCLAVG--GKRLYSGS-MDNTIRVWDLD-TLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLD----------- 375 (432)
Q Consensus 313 ~~h~~~v~~l~~~--~~~l~sgs-~dg~I~vwd~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d----------- 375 (432)
..+...+.+++|+ +++++.++ .++.+++|+++ .+..+..+..|...+..+.++ +++|++++.+
T Consensus 169 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 248 (297)
T 2ojh_A 169 THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLD 248 (297)
T ss_dssp CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEE
T ss_pred ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCc
Confidence 6677889999997 77777665 58999999986 566778888888888888887 6888888766
Q ss_pred CcEEEEEcCCCCceeEE--eeccCCcceEEEeeeeCCCCCcEEEEEeCCC
Q 014003 376 NTIKVWIMTEEGNLEVA--YTHNEDHGVLALGGLNDPDGNPVLICSCNDD 423 (432)
Q Consensus 376 g~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg 423 (432)
+.|.+||+.+++..... ..+...+..+.+ +|+|+.+++++..++
T Consensus 249 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~----spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 249 VRVQLMDMDGGNVETLFDLFGGQGTMNSPNW----SPDGDEFAYVRYFPV 294 (297)
T ss_dssp EEEEEEETTSCSCEEEEEEEESTTTSCSCCB----CTTSSEEEEEEECCC
T ss_pred eEEEEEecCCCCceeeeccCCCCcccccceE----CCCCCEEEEEEeccC
Confidence 56999999887654333 255555555544 899995445444443
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=3e-20 Score=200.43 Aligned_cols=234 Identities=8% Similarity=0.070 Sum_probs=176.0
Q ss_pred EEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCC-CceeEEEeCCCc--eeeEEECCCEEEEEcCCeEEEEEccC
Q 014003 185 LAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT-GQSASVINLGAE--VGSLICEGPWVFVGMPNVVKAWHIES 261 (432)
Q Consensus 185 ~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~i~vwd~~~ 261 (432)
...+.+|...+.+++|+++ .++++++.|+++++|.+.. +.....+..... ...+.+++..++.+.++.|.+|++..
T Consensus 196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~ 274 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDT 274 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTT
T ss_pred eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCc
Confidence 3445789999999999988 6777888899999998653 333344433222 34566899988888899999999965
Q ss_pred CceEeecC-----------CcCCEEEEEEc-CC--EEEEEECCCcEEEEECCCCCCCccccceeeecccc-CeEEEEEe-
Q 014003 262 SAEFSLDG-----------PVGEVYSMVVA-NE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR-PVTCLAVG- 325 (432)
Q Consensus 262 ~~~~~~~~-----------~~~~v~~l~~~-~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~-~v~~l~~~- 325 (432)
.....+.. +...+.++.|+ |+ .+++++ ++.|.+|+...+. ...+..|.. .+..++|+
T Consensus 275 ~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~sd 347 (1045)
T 1k32_A 275 EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY------VLKVPEPLRIRYVRRGGDT 347 (1045)
T ss_dssp CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB------EEECSCCSCEEEEEECSSS
T ss_pred eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc------eEEccCCCcceEEeeeEcC
Confidence 55543333 22368899999 88 666666 8899999987653 233455666 77777776
Q ss_pred CCEEEEEeCCCeEE-EEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceE
Q 014003 326 GKRLYSGSMDNTIR-VWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVL 402 (432)
Q Consensus 326 ~~~l~sgs~dg~I~-vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 402 (432)
++.++.++.++.+. +||+.+++... +.+|...+..+.++ +++|++++.++.|++||+.+++.......|...+..+
T Consensus 348 g~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~ 426 (1045)
T 1k32_A 348 KVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF 426 (1045)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred CCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccce
Confidence 67888888888899 99998876544 44787888899888 7899999999999999999887766665777766666
Q ss_pred EEeeeeCCCCCcEEEEEeCC----------CeEEEeeCCC
Q 014003 403 ALGGLNDPDGNPVLICSCND----------DSVHLYELPS 432 (432)
Q Consensus 403 ~~~~~~sp~g~~~l~sg~~D----------g~I~iwdl~s 432 (432)
+| +|||+ +|++++.+ +.|++||+.+
T Consensus 427 ~~----SpDG~-~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 427 TI----SDNSR-FIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp EE----CTTSC-EEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred EE----CCCCC-eEEEEecCccccccCCCCCeEEEEECCC
Confidence 66 89999 56665544 4899999864
No 135
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=2.2e-20 Score=201.42 Aligned_cols=330 Identities=11% Similarity=0.047 Sum_probs=229.9
Q ss_pred CCCCCCCCC-------CCCCCCCCceecCCCCCC----Cc--ccccccCCCCCC-CCCC--cccccC-------------
Q 014003 85 PVSNHKKSP-------PSYNCPKNNVRVSSGSEE----GT--THVQNRENPDRT-VPNK--SSLDCS------------- 135 (432)
Q Consensus 85 ~~~gh~~~v-------~~~~~s~~g~~las~~~D----g~--i~iW~~~~~~~~-~~~~--~~~~~~------------- 135 (432)
.+.+|...+ .+++|||||+.+++++.| +. +.+|++.++... .... .....+
T Consensus 94 ~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~ 173 (1045)
T 1k32_A 94 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFEL 173 (1045)
T ss_dssp ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCC
T ss_pred EcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCc
Confidence 456777776 899999999988887755 44 455555443211 0000 000000
Q ss_pred --C----CCC--------CCCCceeeeecCCCceEEeeccC-ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEe
Q 014003 136 --T----GSD--------DSGSKRTLERTTPKNVCYHWLSG-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIAL 200 (432)
Q Consensus 136 --~----~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~ 200 (432)
+ +.. ..+....+..+.....+..|... .+++++.++.+++|.++........+..|. .+...+|
T Consensus 174 ~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~ 252 (1045)
T 1k32_A 174 PHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHL 252 (1045)
T ss_dssp TTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEE
T ss_pred cccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeE
Confidence 0 000 00111222334444555556555 445677889999998753223345566665 4667799
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC------------ce--eeEE-ECCCEEEEEcCCeEEEEEccCCceE
Q 014003 201 PLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA------------EV--GSLI-CEGPWVFVGMPNVVKAWHIESSAEF 265 (432)
Q Consensus 201 ~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~------------~~--~~~~-~~~~~l~~~~~~~i~vwd~~~~~~~ 265 (432)
+|+|++|+.+. ++.|.+||+...+.. .+.... .+ ..+. +++..++.+.++.+.+|++..+...
T Consensus 253 SpDG~~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~ 330 (1045)
T 1k32_A 253 NTDGRRILFSK-GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL 330 (1045)
T ss_dssp EESSSCEEEEE-TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEE
T ss_pred cCCCCEEEEEe-CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceE
Confidence 99999998884 899999999544433 433311 22 3456 6788887777999999999988877
Q ss_pred eecCCcC-CEEEEEEcCC--EEEEEECCCcEE-EEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEE
Q 014003 266 SLDGPVG-EVYSMVVANE--MLFAGAQDGNIL-VWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIR 339 (432)
Q Consensus 266 ~~~~~~~-~v~~l~~~~~--~l~~g~~dg~i~-~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~ 339 (432)
....+.. .+..+.|+ + .++.++.++.+. +||+..+. ...+.+|...+..++|+ |++|++++.++.|+
T Consensus 331 ~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~------~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~ 403 (1045)
T 1k32_A 331 KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIM 403 (1045)
T ss_dssp ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC------EEECCCCCCSEEEEEECTTSSEEEEEETTSEEE
T ss_pred EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC------ceEecCCccceeeeEECCCCCEEEEECCCCeEE
Confidence 7777777 89999999 7 788888888888 89987654 22334677889999997 89999999999999
Q ss_pred EEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCC----------cEEEEEcCCCCceeEEeeccCCcceEEEeee
Q 014003 340 VWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDN----------TIKVWIMTEEGNLEVAYTHNEDHGVLALGGL 407 (432)
Q Consensus 340 vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (432)
+||+++++....+.+|...+.+++|+ +++|++++.++ .|++||+.+++ +..+..+......+ .
T Consensus 404 ~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~----~ 478 (1045)
T 1k32_A 404 TVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAP----A 478 (1045)
T ss_dssp EEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEE----E
T ss_pred EEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCc----e
Confidence 99999999988887898888888888 78888887654 89999998865 44555554444333 4
Q ss_pred eCCCCCcEEEEEeCCCeEEEeeC
Q 014003 408 NDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 408 ~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
|+|||+ .|+.++.++..++|+.
T Consensus 479 ~spdG~-~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 479 FDADSK-NLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp ECTTSC-EEEEEESCCCCCEECS
T ss_pred EcCCCC-EEEEEecccCCcCcch
Confidence 599999 7778888888777764
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.85 E-value=1.2e-18 Score=163.18 Aligned_cols=258 Identities=16% Similarity=0.215 Sum_probs=170.2
Q ss_pred eeeCCCCCeEEEEeCCC-C-cEEEEEEecccCcEEEEEecCCCCEEEEEeCC-CcEEEEeCC--CCce--eEEEeCCCce
Q 014003 164 CVKGDECRFWHSWFCGE-G-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD-GTVQLWDCH--TGQS--ASVINLGAEV 236 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~-~-~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~D-g~v~iWd~~--~~~~--~~~~~~~~~~ 236 (432)
+++++.++.|++|+++. + .+.+.. ..|...+.+++|+|++++|++++.+ +.|.+|++. +++. +..+......
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 86 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 86 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCC
Confidence 44557789999999953 2 233333 4578889999999999999998887 999999997 5553 3444444444
Q ss_pred eeEE--ECCCEEEEE--cCCeEEEEEcc---CCceEeecCCcCCEEEEEEcCC--EEEEEE-CCCcEEEEECCC-CCCCc
Q 014003 237 GSLI--CEGPWVFVG--MPNVVKAWHIE---SSAEFSLDGPVGEVYSMVVANE--MLFAGA-QDGNILVWKGIP-NTQNP 305 (432)
Q Consensus 237 ~~~~--~~~~~l~~~--~~~~i~vwd~~---~~~~~~~~~~~~~v~~l~~~~~--~l~~g~-~dg~i~~wd~~~-~~~~~ 305 (432)
..+. +++..++++ .++.|.+||+. .............+.+++++++ .+++++ .++.|.+||+.+ ++.
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~-- 164 (343)
T 1ri6_A 87 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL-- 164 (343)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE--
T ss_pred cEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce--
Confidence 4443 577766544 37889999994 3333444444556888999988 677766 899999999986 321
Q ss_pred cccce--eeec-cccCeEEEEEe--CCEEEEE-eCCCeEEEEECCC--Cce--EEEec---CC---CCCcEEEEEc--CC
Q 014003 306 FQLAA--LLKG-HTRPVTCLAVG--GKRLYSG-SMDNTIRVWDLDT--LEA--VMTLN---GH---TDAPMSLLCW--DQ 367 (432)
Q Consensus 306 ~~~~~--~~~~-h~~~v~~l~~~--~~~l~sg-s~dg~I~vwd~~~--~~~--~~~~~---~~---~~~v~~~~~~--~~ 367 (432)
.... .... ....+..++|+ +++++++ ..++.|.+||++. ++. ...+. .. ...+..+.++ ++
T Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 243 (343)
T 1ri6_A 165 -VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 243 (343)
T ss_dssp -EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred -eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC
Confidence 1111 2222 23467788997 7766555 4889999999953 433 22332 11 2245567777 66
Q ss_pred EEE-EEeCCCcEEEEEcCC--CC--ceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 368 YLL-SCSLDNTIKVWIMTE--EG--NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 368 ~l~-s~s~dg~i~iwd~~~--~~--~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
+|+ +...++.|.+||+.. +. .+..+..+.. +..+++ +|+|+.+++++..++.|.+|++
T Consensus 244 ~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~----s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 244 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNV----DHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEE----CTTSSEEEEECTTTCEEEEEEE
T ss_pred EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEE----CCCCCEEEEecCCCCeEEEEEE
Confidence 666 555799999999983 22 2222222222 445555 8999944444447899999954
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=1.5e-18 Score=162.20 Aligned_cols=253 Identities=9% Similarity=-0.007 Sum_probs=178.3
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEec-ccC-cEEEEEecCCCCEE-EEEeCCCcEEEEeCCCCceeEEEeCCC-----
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEG-HKK-AVSGIALPLRSDKL-YSGSRDGTVQLWDCHTGQSASVINLGA----- 234 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~-H~~-~V~~l~~~~~~~~l-~s~s~Dg~v~iWd~~~~~~~~~~~~~~----- 234 (432)
.+++++.++.|.+||+.++ +.+..+.. +.. .+..++|+|+++++ ++++.++.|.+||+.+++.+..+....
T Consensus 3 ~~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKM-AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEETTTEEEEEETTTT-EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEcCCCCeEEEEECCCC-cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 5778888999999999887 66666653 322 58899999999766 555668999999999999888877543
Q ss_pred -ceee--EEECCCEEEEE-------------cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEE
Q 014003 235 -EVGS--LICEGPWVFVG-------------MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVW 296 (432)
Q Consensus 235 -~~~~--~~~~~~~l~~~-------------~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~w 296 (432)
.... +.++++.++++ .++.|.+||+.+++..........+.++.++++ +++++ ++.|.+|
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~ 159 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVM 159 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEE
Confidence 3333 33577777766 479999999998876644444556778889887 56666 7899999
Q ss_pred ECCCCCCCccccceeeeccc--cCeEEEEEeCCEEEEEeCC-C-----------------------eEEEEECCCCceE-
Q 014003 297 KGIPNTQNPFQLAALLKGHT--RPVTCLAVGGKRLYSGSMD-N-----------------------TIRVWDLDTLEAV- 349 (432)
Q Consensus 297 d~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~l~sgs~d-g-----------------------~I~vwd~~~~~~~- 349 (432)
|+.+++. ...+..+. .++ .+..++..++..+.+ + .|.+||+++++..
T Consensus 160 d~~~~~~-----~~~~~~~~~~~~~-~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 233 (337)
T 1pby_B 160 DPEAGTL-----VEDKPIQSWEAET-YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM 233 (337)
T ss_dssp ETTTTEE-----EEEECSTTTTTTT-BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE
T ss_pred ECCCCcE-----eeeeeccccCCCc-eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE
Confidence 9987642 33333222 222 222335544333322 2 5799999998875
Q ss_pred EEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEE
Q 014003 350 MTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHL 427 (432)
Q Consensus 350 ~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~i 427 (432)
..+..+...+.++.++ +++++++ ++.|.+||+.+.+.+..+... .....+++ +|+|+ .|++++.++.|++
T Consensus 234 ~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~----s~dg~-~l~~~~~~~~i~v 305 (337)
T 1pby_B 234 REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNV----STDGS-TVWLGGALGDLAA 305 (337)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEE----CTTSC-EEEEESBSSEEEE
T ss_pred eecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEE----CCCCC-EEEEEcCCCcEEE
Confidence 2334555667778887 6788877 799999999887766555433 33444555 89999 6677788999999
Q ss_pred eeCCC
Q 014003 428 YELPS 432 (432)
Q Consensus 428 wdl~s 432 (432)
||+++
T Consensus 306 ~d~~~ 310 (337)
T 1pby_B 306 YDAET 310 (337)
T ss_dssp EETTT
T ss_pred EECcC
Confidence 99864
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.83 E-value=8.2e-19 Score=181.87 Aligned_cols=270 Identities=11% Similarity=0.006 Sum_probs=179.1
Q ss_pred CCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCCCC
Q 014003 92 SPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECR 171 (432)
Q Consensus 92 ~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 171 (432)
.+.+++|+|||+++++ +.||++++|++.++..
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~----------------------------------------------- 49 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS----------------------------------------------- 49 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC-----------------------------------------------
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcE-----------------------------------------------
Confidence 3689999999998887 5699999986543321
Q ss_pred eEEEEeCCCCcEEEEEEecccC---cEEEEEecCCCCEEEEEeCC---------CcEEEEeCCCCceeEEEeC-CCc---
Q 014003 172 FWHSWFCGEGFTMLAKLEGHKK---AVSGIALPLRSDKLYSGSRD---------GTVQLWDCHTGQSASVINL-GAE--- 235 (432)
Q Consensus 172 ~i~vw~~~~~~~~~~~l~~H~~---~V~~l~~~~~~~~l~s~s~D---------g~v~iWd~~~~~~~~~~~~-~~~--- 235 (432)
...+.+|.. .|.+++|+|||++|++++.+ +.+.+||+.+++. ..+.. ...
T Consensus 50 -------------~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~ 115 (723)
T 1xfd_A 50 -------------TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAK 115 (723)
T ss_dssp -------------EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCC
T ss_pred -------------EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCcccccc
Confidence 223344443 48999999999999999875 7788999998876 33322 111
Q ss_pred e--eeEEECCCEEEEEcCCeEEEEEccCCceEeecC-CcC------------------CEEEEEEcCC--EEEEEECCC-
Q 014003 236 V--GSLICEGPWVFVGMPNVVKAWHIESSAEFSLDG-PVG------------------EVYSMVVANE--MLFAGAQDG- 291 (432)
Q Consensus 236 ~--~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~-~~~------------------~v~~l~~~~~--~l~~g~~dg- 291 (432)
+ ..+.++++.++...++.|++||+.+++...... +.. .+.++.|+|+ .|++++.++
T Consensus 116 ~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~ 195 (723)
T 1xfd_A 116 LQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDS 195 (723)
T ss_dssp CSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECT
T ss_pred ccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCC
Confidence 2 345578988888878999999999887654432 222 2378999998 777776543
Q ss_pred ---------------------------------cEEEEECCCCCCCccccceeeec------cccCeEEEEEe--CCEEE
Q 014003 292 ---------------------------------NILVWKGIPNTQNPFQLAALLKG------HTRPVTCLAVG--GKRLY 330 (432)
Q Consensus 292 ---------------------------------~i~~wd~~~~~~~~~~~~~~~~~------h~~~v~~l~~~--~~~l~ 330 (432)
.|++||+.+++. ...+.. +...+..++|+ |++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~ 270 (723)
T 1xfd_A 196 RVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH-----DLEMMPPDDPRMREYYITMVKWATSTKVAV 270 (723)
T ss_dssp TSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC-----CEECCCCCCGGGSSEEEEEEEESSSSEEEE
T ss_pred ccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce-----eEEeeCCccCCCccceeEEEEEeCCCeEEE
Confidence 799999987652 223333 35678889997 77776
Q ss_pred EEeC----CCeEEEEECCCCceEEEecCC-CCCc----EEEEEc--CCEEEE--EeCCC------cEEEEEcCCCCc---
Q 014003 331 SGSM----DNTIRVWDLDTLEAVMTLNGH-TDAP----MSLLCW--DQYLLS--CSLDN------TIKVWIMTEEGN--- 388 (432)
Q Consensus 331 sgs~----dg~I~vwd~~~~~~~~~~~~~-~~~v----~~~~~~--~~~l~s--~s~dg------~i~iwd~~~~~~--- 388 (432)
+.+. +..|++||+.++++...+..+ ...+ ..+.|+ |+.|+. +..++ .|.+||+.....
T Consensus 271 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 350 (723)
T 1xfd_A 271 TWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDN 350 (723)
T ss_dssp EEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCC
T ss_pred EEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccc
Confidence 6643 358999999999887766433 3332 256666 665554 55677 466677323333
Q ss_pred eeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCC--CeEEEeeCC
Q 014003 389 LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND--DSVHLYELP 431 (432)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~D--g~I~iwdl~ 431 (432)
...+......+.. ...|+|||+.+++++..+ +.+++|++.
T Consensus 351 ~~~l~~~~~~~~~---~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 351 IQSITSGDWDVTK---ILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp CCBSCCSSSCEEE---EEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred eeEeecCCeEEEe---eeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 3333322222211 134599999555555555 889999864
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.82 E-value=8.4e-19 Score=182.35 Aligned_cols=270 Identities=10% Similarity=-0.004 Sum_probs=191.7
Q ss_pred ceEEeeccCceeeCCC-CC-----eEEEEeCCCCcEEEEEEecccC------------------------cEEEEEecCC
Q 014003 154 NVCYHWLSGNCVKGDE-CR-----FWHSWFCGEGFTMLAKLEGHKK------------------------AVSGIALPLR 203 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~-d~-----~i~vw~~~~~~~~~~~l~~H~~------------------------~V~~l~~~~~ 203 (432)
.+.+.+.+..+++++. |+ .|++||+.++ +....+..|.. .|.+++|+||
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpD 119 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG-QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPD 119 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC-CEEEEECGGGTC--------------------CCEESCCCEECTT
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCCC-ceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCC
Confidence 5667777888888877 88 8999999887 44555555433 3889999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCC---ceeEEEeCCCceeeE--EECCCEEEEEcCCeEEEEEccCCceEeecCCcCC-----
Q 014003 204 SDKLYSGSRDGTVQLWDCHTG---QSASVINLGAEVGSL--ICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGE----- 273 (432)
Q Consensus 204 ~~~l~s~s~Dg~v~iWd~~~~---~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~----- 273 (432)
|++|++++. ++|.+||+.++ +..........+..+ .++++.++...++.|++||+.+++..........
T Consensus 120 g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g 198 (741)
T 2ecf_A 120 AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNG 198 (741)
T ss_dssp SSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEES
T ss_pred CCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceecc
Confidence 999999987 99999999988 554433344444443 4689999888889999999998876654432221
Q ss_pred ------------EEEEEEcCC--EEEEEECCC---------------------------------cEEEEECCC-CCCCc
Q 014003 274 ------------VYSMVVANE--MLFAGAQDG---------------------------------NILVWKGIP-NTQNP 305 (432)
Q Consensus 274 ------------v~~l~~~~~--~l~~g~~dg---------------------------------~i~~wd~~~-~~~~~ 305 (432)
+.++.|+|+ .|++++.|+ .|.+||+.+ ++..
T Consensus 199 ~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~- 277 (741)
T 2ecf_A 199 IAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQ- 277 (741)
T ss_dssp CCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCE-
T ss_pred ccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceE-
Confidence 467899998 777777665 788999887 6421
Q ss_pred cccceeeeccccCeEEEEE-eCCEEEEEeC-----CCeEEEEECCCCceEEEecCCCC----CcEEEEEc--CCEEEEEe
Q 014003 306 FQLAALLKGHTRPVTCLAV-GGKRLYSGSM-----DNTIRVWDLDTLEAVMTLNGHTD----APMSLLCW--DQYLLSCS 373 (432)
Q Consensus 306 ~~~~~~~~~h~~~v~~l~~-~~~~l~sgs~-----dg~I~vwd~~~~~~~~~~~~~~~----~v~~~~~~--~~~l~s~s 373 (432)
.+.....|...+..++| +|++|++++. +..|++||+.+++....+..+.. .+..+.|+ ++++++++
T Consensus 278 --~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~ 355 (741)
T 2ecf_A 278 --WIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSE 355 (741)
T ss_dssp --EECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEEC
T ss_pred --EecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEec
Confidence 11111146666776665 5888887654 57899999999998877765543 33466666 67889999
Q ss_pred CCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCC--eEEEeeCC
Q 014003 374 LDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD--SVHLYELP 431 (432)
Q Consensus 374 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg--~I~iwdl~ 431 (432)
.||.++||.+........+..+...+..+. .|+|+|+.++++++.++ .++||++.
T Consensus 356 ~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~---~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 356 RTGFQHLYRIDSKGKAAALTHGNWSVDELL---AVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp TTSSCEEEEECSSSCEEESCCSSSCEEEEE---EEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCCccEEEEEcCCCCeeeeeecceEEEeEe---EEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 999888888763322555545544433331 24899996667777776 89999863
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.82 E-value=5.4e-19 Score=182.83 Aligned_cols=320 Identities=10% Similarity=-0.001 Sum_probs=197.8
Q ss_pred CCCCCCCCCceecCCCCCCCcccccccCCCCC--CCCCCcccccCC-CCCCCCCceeeeecCCCceEEeeccCceeeCCC
Q 014003 93 PPSYNCPKNNVRVSSGSEEGTTHVQNRENPDR--TVPNKSSLDCST-GSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDE 169 (432)
Q Consensus 93 v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 169 (432)
+..++|. ++++ ++++.|| | +||+.++.. ... ........ -....+. ..........+++++. ..++.+ .
T Consensus 28 ~~~~~w~-g~~~-~~~~~~~-i-~~d~~tg~~~~~~l-~~~~~~~~~l~~~~~~-~~~~~~~v~~~~~spd-~~~~~~-~ 99 (706)
T 2z3z_A 28 VVGLQWM-GDNY-VFIEGDD-L-VFNKANGKSAQTTR-FSAADLNALMPEGCKF-QTTDAFPSFRTLDAGR-GLVVLF-T 99 (706)
T ss_dssp CTTCEEE-TTEE-EEEETTE-E-EEEC-------CEE-EEHHHHHTTC------------CCCEEEEETTT-TEEEEE-E
T ss_pred CCCCcCc-CCeE-EEEeCCc-E-EEECCCCcEeeEEe-echhHhhhhccchhcc-ccccccCceeEEECCC-CeEEEE-E
Confidence 5778888 5554 4445577 7 999876654 111 00000000 0000000 0011112234555666 444444 4
Q ss_pred CCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCC-----CceeEEEeCCCc---------
Q 014003 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHT-----GQSASVINLGAE--------- 235 (432)
Q Consensus 170 d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~-----~~~~~~~~~~~~--------- 235 (432)
++.|++||+.++ +. ..+..|...+.+++|+|||++|+++ .|+.|.+||+.+ ++..........
T Consensus 100 ~~~i~~~d~~~~-~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 176 (706)
T 2z3z_A 100 QGGLVGFDMLAR-KV-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH 176 (706)
T ss_dssp TTEEEEEETTTT-EE-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred CCEEEEEECCCC-ce-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence 599999999887 43 3455677889999999999999995 689999999998 776654433322
Q ss_pred ------ee--eEEECCCEEEEEc----------------------------------CCeEEEEEccCCceEeec---CC
Q 014003 236 ------VG--SLICEGPWVFVGM----------------------------------PNVVKAWHIESSAEFSLD---GP 270 (432)
Q Consensus 236 ------~~--~~~~~~~~l~~~~----------------------------------~~~i~vwd~~~~~~~~~~---~~ 270 (432)
+. .+.++++.|+.+. +..|.+||+.+++..... .+
T Consensus 177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 256 (706)
T 2z3z_A 177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK 256 (706)
T ss_dssp GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence 12 3346888777653 357999999988765443 45
Q ss_pred cCCEEEEEEcCC--EEEEEECCC-----cEEEEECCCCCCCccccceeeecccc---CeEEEEE----eCCEEEEEeCCC
Q 014003 271 VGEVYSMVVANE--MLFAGAQDG-----NILVWKGIPNTQNPFQLAALLKGHTR---PVTCLAV----GGKRLYSGSMDN 336 (432)
Q Consensus 271 ~~~v~~l~~~~~--~l~~g~~dg-----~i~~wd~~~~~~~~~~~~~~~~~h~~---~v~~l~~----~~~~l~sgs~dg 336 (432)
...+.++.|+|+ .+++++.++ .|.+||+.++.. ...+.. ..+.. .+..++| +++++++++.||
T Consensus 257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~--~~~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF--VRTLFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE--EEEEEE-EECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce--eeEEEE-ccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 567899999998 677777665 899999988732 111111 11221 2344566 567899999999
Q ss_pred eEEEEECC-CCceEEEecCCCCCcEE-EEEc--CCEEEEEe-CCC----cEEEEEcCCCCceeEEeeccCCcceEEEeee
Q 014003 337 TIRVWDLD-TLEAVMTLNGHTDAPMS-LLCW--DQYLLSCS-LDN----TIKVWIMTEEGNLEVAYTHNEDHGVLALGGL 407 (432)
Q Consensus 337 ~I~vwd~~-~~~~~~~~~~~~~~v~~-~~~~--~~~l~s~s-~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (432)
.++||+++ +++.+..+..+...+.. +.++ ++.|+.++ .++ .|..||+.+++ ...+ .+...+.. ..
T Consensus 334 ~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l-~~~~~~~~----~~ 407 (706)
T 2z3z_A 334 WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL-TPESGMHR----TQ 407 (706)
T ss_dssp SCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES-CCSSSEEE----EE
T ss_pred ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec-cCCCceEE----EE
Confidence 99999886 67788888888777776 5676 56665554 444 56666766654 2222 34444433 34
Q ss_pred eCCCCCcEEEEEeCC---CeEEEeeCCC
Q 014003 408 NDPDGNPVLICSCND---DSVHLYELPS 432 (432)
Q Consensus 408 ~sp~g~~~l~sg~~D---g~I~iwdl~s 432 (432)
|+|||+.++++++.+ +.|++||+.+
T Consensus 408 ~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 408 LSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp ECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred ECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 599999555554444 5699999763
No 141
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.81 E-value=7.6e-17 Score=151.72 Aligned_cols=255 Identities=10% Similarity=0.039 Sum_probs=180.8
Q ss_pred CceEEeeccCceeeCCC-------CCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEE-EEeCCCcEEEEeCCCC
Q 014003 153 KNVCYHWLSGNCVKGDE-------CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLY-SGSRDGTVQLWDCHTG 224 (432)
Q Consensus 153 ~~~~~~~~~~~~~~g~~-------d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~-s~s~Dg~v~iWd~~~~ 224 (432)
..+++.+.+..++.++. ++.|.+||..++ +.+..+.. ...+..++|+|++++++ +...++.|.+||.+++
T Consensus 44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 121 (353)
T 3vgz_A 44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL-EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG 121 (353)
T ss_dssp EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC-CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC-eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC
Confidence 34566666665544432 678999999887 55665553 34578899999999655 4555799999999999
Q ss_pred ceeEEEeCCCc----------ee--eEEECCCEEEEEc---CCeEEEEEccCCceEeecC-CcCCEEEEEEcCC--EEEE
Q 014003 225 QSASVINLGAE----------VG--SLICEGPWVFVGM---PNVVKAWHIESSAEFSLDG-PVGEVYSMVVANE--MLFA 286 (432)
Q Consensus 225 ~~~~~~~~~~~----------~~--~~~~~~~~l~~~~---~~~i~vwd~~~~~~~~~~~-~~~~v~~l~~~~~--~l~~ 286 (432)
+.+..+..... .. .+.+++..++++. ++.|.+||+++++...... +...+.++.++++ .+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 201 (353)
T 3vgz_A 122 EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYT 201 (353)
T ss_dssp CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEE
T ss_pred eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEE
Confidence 99888886431 22 3335777666543 7889999999988765444 5555778888877 8888
Q ss_pred EECCCcEEEEECCCCCCCccccceeee----ccccCeEEEEEe--CCEEEEEeC-CCeEEEEECCCCceEEEecCCCCCc
Q 014003 287 GAQDGNILVWKGIPNTQNPFQLAALLK----GHTRPVTCLAVG--GKRLYSGSM-DNTIRVWDLDTLEAVMTLNGHTDAP 359 (432)
Q Consensus 287 g~~dg~i~~wd~~~~~~~~~~~~~~~~----~h~~~v~~l~~~--~~~l~sgs~-dg~I~vwd~~~~~~~~~~~~~~~~v 359 (432)
++.++.|.+||..+++. ...+. ++...+..++++ ++++++++. ++.|.+||+++++.+..+.....
T Consensus 202 ~~~~~~i~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-- 274 (353)
T 3vgz_A 202 TNADGELITIDTADNKI-----LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-- 274 (353)
T ss_dssp ECTTSEEEEEETTTTEE-----EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--
T ss_pred EcCCCeEEEEECCCCeE-----EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--
Confidence 99999999999987642 33333 245567788887 777766665 59999999999999888875544
Q ss_pred EEEEEc--CCEEEEEe-CCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeC
Q 014003 360 MSLLCW--DQYLLSCS-LDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCN 421 (432)
Q Consensus 360 ~~~~~~--~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~ 421 (432)
..+.++ ++++++++ .++.|.+||+.+.+.+..+.... ....+ .++|+|+.++++...
T Consensus 275 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~----~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 275 LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSL----ALSADGKTLYVSVKQ 334 (353)
T ss_dssp CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEE----EECTTSCEEEEEEEC
T ss_pred ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeE----EEcCCCCEEEEEEcc
Confidence 345554 67555554 79999999999887766654432 23333 448999955555443
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.81 E-value=1.8e-17 Score=155.13 Aligned_cols=266 Identities=14% Similarity=0.102 Sum_probs=173.8
Q ss_pred CceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCCC-CeEEEEeCC
Q 014003 101 NNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDEC-RFWHSWFCG 179 (432)
Q Consensus 101 ~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-~~i~vw~~~ 179 (432)
+...+++++.|+.|++|++...+... .. ........+..+++.+.+..+++++.+ +.|.+|+++
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~----~~-----------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~ 68 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALT----LT-----------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 68 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEE----EE-----------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEE----Ee-----------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEec
Confidence 33445555779999999875322100 00 001111223467777777766666655 999999997
Q ss_pred --CC-cEEEEEEecccCcEEEEEecCCCCEEEEEeC-CCcEEEEeCC---CCceeEEEeCCCceeeEE--ECCCEEEEE-
Q 014003 180 --EG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSR-DGTVQLWDCH---TGQSASVINLGAEVGSLI--CEGPWVFVG- 249 (432)
Q Consensus 180 --~~-~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~-Dg~v~iWd~~---~~~~~~~~~~~~~~~~~~--~~~~~l~~~- 249 (432)
++ .+.+..+..+. .+..++|+|++++|++++. ++.|.+||+. +.+....+.....+..+. +++..++++
T Consensus 69 ~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 147 (343)
T 1ri6_A 69 PDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA 147 (343)
T ss_dssp TTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEE
T ss_pred CCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEec
Confidence 43 34455565544 8899999999998877665 8899999994 344555555555454443 567766554
Q ss_pred -cCCeEEEEEccC-CceE-----eec-CCcCCEEEEEEcCC--EEEEE-ECCCcEEEEECCCCCCCccccceeee---cc
Q 014003 250 -MPNVVKAWHIES-SAEF-----SLD-GPVGEVYSMVVANE--MLFAG-AQDGNILVWKGIPNTQNPFQLAALLK---GH 315 (432)
Q Consensus 250 -~~~~i~vwd~~~-~~~~-----~~~-~~~~~v~~l~~~~~--~l~~g-~~dg~i~~wd~~~~~~~~~~~~~~~~---~h 315 (432)
.++.|.+||+.+ ++.. ... .....+..++++|+ +++++ ..++.|.+||+...... ........ ..
T Consensus 148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~-~~~~~~~~~~~~~ 226 (343)
T 1ri6_A 148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN-IECVQTLDMMPEN 226 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC-CEEEEEEECSCTT
T ss_pred CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc-EEEEeeccccCcc
Confidence 689999999987 5432 222 23457888999988 55544 48899999999643211 11122221 11
Q ss_pred ---ccCeEEEEEe--CCEEE-EEeCCCeEEEEECC----CCceEEEecCCCCCcEEEEEc--CCEEEEEe-CCCcEEEEE
Q 014003 316 ---TRPVTCLAVG--GKRLY-SGSMDNTIRVWDLD----TLEAVMTLNGHTDAPMSLLCW--DQYLLSCS-LDNTIKVWI 382 (432)
Q Consensus 316 ---~~~v~~l~~~--~~~l~-sgs~dg~I~vwd~~----~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s-~dg~i~iwd 382 (432)
...+..++|+ +++|+ ++..++.|.+||++ +.+.+..+..+.. +..++++ +++|++++ .++.|.+|+
T Consensus 227 ~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 227 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEE
Confidence 2356678887 77776 45579999999998 3445556655544 7777777 67788777 689999996
Q ss_pred cC
Q 014003 383 MT 384 (432)
Q Consensus 383 ~~ 384 (432)
++
T Consensus 306 ~d 307 (343)
T 1ri6_A 306 IV 307 (343)
T ss_dssp EE
T ss_pred Ec
Confidence 65
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.81 E-value=2.7e-18 Score=160.38 Aligned_cols=267 Identities=10% Similarity=-0.014 Sum_probs=186.9
Q ss_pred eecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeec---CCCceEEeeccCc-eeeCCCCCeEEEEeC
Q 014003 103 VRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERT---TPKNVCYHWLSGN-CVKGDECRFWHSWFC 178 (432)
Q Consensus 103 ~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~g~~d~~i~vw~~ 178 (432)
.++++++.|++|++||..+.... .. +.... .+..+++.+.+.. ++++..++.|.+||+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~----~~--------------~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 63 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVD----KV--------------ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEE----EE--------------EECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred cEEEEcCCCCeEEEEECCCCcEE----EE--------------EEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEEC
Confidence 47888888999999987654321 00 00011 1345677777764 467777899999999
Q ss_pred CCCcEEEEEEec-c----cCcEEEEEecCCCCEEEEEe------------CCCcEEEEeCCCCceeEEEeCCCceeeEE-
Q 014003 179 GEGFTMLAKLEG-H----KKAVSGIALPLRSDKLYSGS------------RDGTVQLWDCHTGQSASVINLGAEVGSLI- 240 (432)
Q Consensus 179 ~~~~~~~~~l~~-H----~~~V~~l~~~~~~~~l~s~s------------~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~- 240 (432)
.++ +.+..+.. + ...+.+++|+|++++|++++ .++.|.+||+.+++....+........+.
T Consensus 64 ~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 142 (337)
T 1pby_B 64 VTG-ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAW 142 (337)
T ss_dssp TTC-CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEE
T ss_pred CCC-CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEE
Confidence 887 44554542 2 23677899999999999886 67999999999999888887665554444
Q ss_pred -ECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEE-CCC-----------------------cE
Q 014003 241 -CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGA-QDG-----------------------NI 293 (432)
Q Consensus 241 -~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~-~dg-----------------------~i 293 (432)
++++.++++ ++.|.+||+.+++.............+.++++ .+++.+ .++ .|
T Consensus 143 s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 221 (337)
T 1pby_B 143 ARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221 (337)
T ss_dssp CTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred CCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence 577767666 78999999998876532221110001134444 333322 222 47
Q ss_pred EEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEE
Q 014003 294 LVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYL 369 (432)
Q Consensus 294 ~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l 369 (432)
.+||+.+++. . ...+..+...+.+++|+ +++++++ ++.|.+||+++++.+..+..+ ..+.++.++ +++|
T Consensus 222 ~~~d~~~~~~---~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l 294 (337)
T 1pby_B 222 LTMDLETGEM---A-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTV 294 (337)
T ss_dssp EEEETTTCCE---E-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEE
T ss_pred EEEeCCCCCc---e-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEE
Confidence 8999988753 1 33345566678889997 7888888 799999999999998887644 456777777 6888
Q ss_pred EEEeCCCcEEEEEcCCCCceeEEeecc
Q 014003 370 LSCSLDNTIKVWIMTEEGNLEVAYTHN 396 (432)
Q Consensus 370 ~s~s~dg~i~iwd~~~~~~~~~~~~~~ 396 (432)
++++.++.|.+||+.+.+.+..+..+.
T Consensus 295 ~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 295 WLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred EEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 889999999999999988777766543
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.80 E-value=1.1e-17 Score=172.93 Aligned_cols=263 Identities=11% Similarity=0.014 Sum_probs=177.6
Q ss_pred eeccCceeeCCCCCeEEEEeCCCCcEEE-EEEeccc-----------------CcEEEEEecCCCCEEEEEeCCCcEEEE
Q 014003 158 HWLSGNCVKGDECRFWHSWFCGEGFTML-AKLEGHK-----------------KAVSGIALPLRSDKLYSGSRDGTVQLW 219 (432)
Q Consensus 158 ~~~~~~~~~g~~d~~i~vw~~~~~~~~~-~~l~~H~-----------------~~V~~l~~~~~~~~l~s~s~Dg~v~iW 219 (432)
.|.+..+++++.++ | +||+.++. .+ ..+..|. ..|.+++|+|+ ++++.+. |++|++|
T Consensus 32 ~w~g~~~~~~~~~~-i-~~d~~tg~-~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~~ 106 (706)
T 2z3z_A 32 QWMGDNYVFIEGDD-L-VFNKANGK-SAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVGF 106 (706)
T ss_dssp EEETTEEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEEEE
T ss_pred cCcCCeEEEEeCCc-E-EEECCCCc-EeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEEEE
Confidence 44466677777777 7 99998873 32 3344443 56999999999 6655553 5999999
Q ss_pred eCCCCceeEEEeCCCcee--eEEECCCEEEEEcCCeEEEEEccC-----CceEeecC-CcCC--------------EEEE
Q 014003 220 DCHTGQSASVINLGAEVG--SLICEGPWVFVGMPNVVKAWHIES-----SAEFSLDG-PVGE--------------VYSM 277 (432)
Q Consensus 220 d~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~i~vwd~~~-----~~~~~~~~-~~~~--------------v~~l 277 (432)
|+.+++..........+. .+.++++.++...++.|++|++.+ ++...... .... +.++
T Consensus 107 d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~ 186 (706)
T 2z3z_A 107 DMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGT 186 (706)
T ss_dssp ETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSE
T ss_pred ECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceE
Confidence 999988776665544444 445689988888999999999998 76554332 2222 4789
Q ss_pred EEcCC--EEEEEE---------------------------------CCCcEEEEECCCCCCCccccceeeeccccCeEEE
Q 014003 278 VVANE--MLFAGA---------------------------------QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCL 322 (432)
Q Consensus 278 ~~~~~--~l~~g~---------------------------------~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l 322 (432)
.|+|+ .|++++ .+..|++||+.++.. ..+.....|...+.++
T Consensus 187 ~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~---~~~~~~~~~~~~~~~~ 263 (706)
T 2z3z_A 187 FWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT---VYLQTGEPKEKFLTNL 263 (706)
T ss_dssp EECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE---EECCCCSCTTCEEEEE
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce---EeeccCCCCceeEeeE
Confidence 99998 777776 456799999987642 1111122466778899
Q ss_pred EEe--CCEEEEEeCCC-----eEEEEECCCCceEEEec-C-CCC---CcEEEEE----cCCEEEEEeCCCcEEEEEcC-C
Q 014003 323 AVG--GKRLYSGSMDN-----TIRVWDLDTLEAVMTLN-G-HTD---APMSLLC----WDQYLLSCSLDNTIKVWIMT-E 385 (432)
Q Consensus 323 ~~~--~~~l~sgs~dg-----~I~vwd~~~~~~~~~~~-~-~~~---~v~~~~~----~~~~l~s~s~dg~i~iwd~~-~ 385 (432)
+|+ ++.|++++.|+ .|++||+.+++....+. . +.. .+..+.+ +++++++++.|+.++||+++ +
T Consensus 264 ~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~ 343 (706)
T 2z3z_A 264 SWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT 343 (706)
T ss_dssp EECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT
T ss_pred EEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC
Confidence 997 88899888776 99999999984443332 1 221 1234444 56789999999999999887 4
Q ss_pred CCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCC----eEEEeeCC
Q 014003 386 EGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD----SVHLYELP 431 (432)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg----~I~iwdl~ 431 (432)
++.+..+..+...+.. ...|+|+|+.++++++.++ .|..||+.
T Consensus 344 ~~~~~~l~~~~~~v~~---~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 344 GRLIRQVTKGEWEVTN---FAGFDPKGTRLYFESTEASPLERHFYCIDIK 390 (706)
T ss_dssp SCEEEECCCSSSCEEE---EEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred CCEEEecCCCCeEEEe---eeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence 5555555544443332 1244999996667776666 66667654
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.79 E-value=1.4e-16 Score=149.89 Aligned_cols=231 Identities=14% Similarity=0.097 Sum_probs=171.9
Q ss_pred ccCcEEEEEecCCCCEEEEEeC-------CCcEEEEeCCCCceeEEEeCCCceeeE--EECCCEEEEE--cCCeEEEEEc
Q 014003 191 HKKAVSGIALPLRSDKLYSGSR-------DGTVQLWDCHTGQSASVINLGAEVGSL--ICEGPWVFVG--MPNVVKAWHI 259 (432)
Q Consensus 191 H~~~V~~l~~~~~~~~l~s~s~-------Dg~v~iWd~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--~~~~i~vwd~ 259 (432)
....+..++|+|+++++++++. +++|.+||..+++....+........+ .++++.++++ .++.|.+||+
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 4567889999999999988875 568999999999999888866554443 4577755544 4689999999
Q ss_pred cCCceEee-cCCcC---------CEEEEEEcCC--EEEEEE--CCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe
Q 014003 260 ESSAEFSL-DGPVG---------EVYSMVVANE--MLFAGA--QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG 325 (432)
Q Consensus 260 ~~~~~~~~-~~~~~---------~v~~l~~~~~--~l~~g~--~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 325 (432)
++++.... ..+.. .+.++.++++ .++++. .++.|.+||..+++ ....+..+...+..++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK-----LKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE-----EEEEECCCCTTCCCCEEE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc-----eEEEecCCCCccceEEEC
Confidence 99886532 22211 2688999887 555554 58899999998764 345555455556777886
Q ss_pred --CCEEEEEeCCCeEEEEECCCCceEEEecC----CCCCcEEEEEc--CCEEEEEeC-CCcEEEEEcCCCCceeEEeecc
Q 014003 326 --GKRLYSGSMDNTIRVWDLDTLEAVMTLNG----HTDAPMSLLCW--DQYLLSCSL-DNTIKVWIMTEEGNLEVAYTHN 396 (432)
Q Consensus 326 --~~~l~sgs~dg~I~vwd~~~~~~~~~~~~----~~~~v~~~~~~--~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~ 396 (432)
++++++++.++.|.+||+.+++.+..+.. +...+..+.++ ++++++++. ++.|.+||+.+++.+..+....
T Consensus 194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 273 (353)
T 3vgz_A 194 SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE 273 (353)
T ss_dssp TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence 88999999999999999999999888764 44456667776 676666654 5999999999888776665433
Q ss_pred CCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 397 EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 397 ~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
. ..+++ +|+|+.++++...++.|.+||+.+
T Consensus 274 ~--~~~~~----s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 274 S--LAVLF----NPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp C--CCEEE----ETTTTEEEEEETTTTEEEEEETTT
T ss_pred C--ceEEE----CCCCCEEEEEECCCCeEEEEECCC
Confidence 2 33444 899996666666899999999864
No 146
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.79 E-value=4.6e-17 Score=152.08 Aligned_cols=269 Identities=7% Similarity=0.059 Sum_probs=179.3
Q ss_pred CCC-CceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccC-ceeeCCCCCeEEE
Q 014003 98 CPK-NNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG-NCVKGDECRFWHS 175 (432)
Q Consensus 98 ~s~-~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~v 175 (432)
|.+ .+..+++++.+++|++||..++.... ... . ....+ .+++.+.+. .++++..++.|.+
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~----~~~--~-----------~~~~~-~~~~s~dg~~l~~~~~~~~~i~~ 66 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILN----QIT--L-----------GYDFV-DTAITSDCSNVVVTSDFCQTLVQ 66 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEE----EEE--C-----------CCCEE-EEEECSSSCEEEEEESTTCEEEE
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceee----eEE--c-----------cCCcc-eEEEcCCCCEEEEEeCCCCeEEE
Confidence 444 44557888889999999876554310 000 0 00111 456666666 4455556889999
Q ss_pred EeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCC---cEEEEeCCCCceeEEEeCCCceeeEE--ECCCEE-EEE
Q 014003 176 WFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDG---TVQLWDCHTGQSASVINLGAEVGSLI--CEGPWV-FVG 249 (432)
Q Consensus 176 w~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg---~v~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~l-~~~ 249 (432)
||..++......+..+..+..+++|+|++++|+++..++ .|.+||+.+++.+..+........+. ++++.+ +++
T Consensus 67 ~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 146 (331)
T 3u4y_A 67 IETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILID 146 (331)
T ss_dssp EECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEE
T ss_pred EECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEe
Confidence 999887433666777777776699999999999655553 89999999999998888776665555 466644 443
Q ss_pred -cCCe-EEEEEccCCceE-----eecCCcCCEEEEEEcCC--EEEE-EECCCcEEEEECCCCCCCccccceeeeccccCe
Q 014003 250 -MPNV-VKAWHIESSAEF-----SLDGPVGEVYSMVVANE--MLFA-GAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (432)
Q Consensus 250 -~~~~-i~vwd~~~~~~~-----~~~~~~~~v~~l~~~~~--~l~~-g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v 319 (432)
.++. +.+|++...... ...........+.++++ ++++ +..++.|.+||+.+++. .+.+..+.. ...+
T Consensus 147 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~--~~~~~~~~~-~~~~ 223 (331)
T 3u4y_A 147 RSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN--ITLLNAVGT-NNLP 223 (331)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS--CEEEEEEEC-SSCC
T ss_pred cCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc--cceeeeccC-CCCC
Confidence 4477 999998754332 22234456789999988 4544 45689999999987653 112444543 3556
Q ss_pred EEEEEe--CCEEEEEe-CCCeEEEEECCCCce--EEEecCC----CCCc---EEEEEc--CCEEEEEe-CCCcEEEEEcC
Q 014003 320 TCLAVG--GKRLYSGS-MDNTIRVWDLDTLEA--VMTLNGH----TDAP---MSLLCW--DQYLLSCS-LDNTIKVWIMT 384 (432)
Q Consensus 320 ~~l~~~--~~~l~sgs-~dg~I~vwd~~~~~~--~~~~~~~----~~~v---~~~~~~--~~~l~s~s-~dg~i~iwd~~ 384 (432)
..++|+ ++++++++ .++.|.+||+++++. +..+..+ .... ..++++ +++|++++ .++.|.+||+.
T Consensus 224 ~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 224 GTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp CCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 778887 88776654 578899999999887 4444433 2222 234555 67776555 56799999997
Q ss_pred CCC
Q 014003 385 EEG 387 (432)
Q Consensus 385 ~~~ 387 (432)
...
T Consensus 304 ~~~ 306 (331)
T 3u4y_A 304 GKV 306 (331)
T ss_dssp SCE
T ss_pred CCc
Confidence 643
No 147
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.78 E-value=8.5e-18 Score=163.49 Aligned_cols=193 Identities=16% Similarity=0.121 Sum_probs=141.3
Q ss_pred CceEEeeccCceeeCCCCCeEEEEeCCCC----------cEEEE----EEecccCcEEEEEecCCCCEEE----EEeCCC
Q 014003 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEG----------FTMLA----KLEGHKKAVSGIALPLRSDKLY----SGSRDG 214 (432)
Q Consensus 153 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~----------~~~~~----~l~~H~~~V~~l~~~~~~~~l~----s~s~Dg 214 (432)
..+++.+....+++|+.++ +++|+...- ..... ....|...|.+++|+|++++|+ +|+.|+
T Consensus 40 n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~ 118 (434)
T 2oit_A 40 SLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS 118 (434)
T ss_dssp BCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred cEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence 3556666677788888777 888775210 01110 1124667899999999999999 888999
Q ss_pred cEEEEeCCCC--------ceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---E
Q 014003 215 TVQLWDCHTG--------QSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---M 283 (432)
Q Consensus 215 ~v~iWd~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~ 283 (432)
+|++||+.++ +.+..+ ....+|...|.+++|+|+ +
T Consensus 119 ~v~iwd~~~~~~~~~~~~~~~~~~----------------------------------~~~~~h~~~V~~v~~~p~~~~~ 164 (434)
T 2oit_A 119 IIAFFDVRTFSNEAKQQKRPFAYH----------------------------------KLLKDAGGMVIDMKWNPTVPSM 164 (434)
T ss_dssp EEEEEEHHHHHCTTCSSCCCSEEE----------------------------------ECCCSGGGSEEEEEECSSCTTE
T ss_pred eEEEEEccccccCCcCCcceeeee----------------------------------eccCCCCCceEEEEECCCCCCE
Confidence 9999998654 111111 123568889999999985 8
Q ss_pred EEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCC-----
Q 014003 284 LFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT----- 356 (432)
Q Consensus 284 l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~----- 356 (432)
+++++.||+|++||++++. ......+|...|.+++|+ |++|++|+.||.|++||++ ++....+..|.
T Consensus 165 las~s~Dg~v~iwD~~~~~-----~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~ 238 (434)
T 2oit_A 165 VAVCLADGSIAVLQVTETV-----KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESD 238 (434)
T ss_dssp EEEEETTSCEEEEEESSSE-----EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTT
T ss_pred EEEEECCCeEEEEEcCCCc-----ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCC
Confidence 9999999999999998863 244456789999999998 8999999999999999998 66666665443
Q ss_pred --CCcEEEEEc-C-CEEEE-EeCCCc------EEEEEcCCC
Q 014003 357 --DAPMSLLCW-D-QYLLS-CSLDNT------IKVWIMTEE 386 (432)
Q Consensus 357 --~~v~~~~~~-~-~~l~s-~s~dg~------i~iwd~~~~ 386 (432)
..+.++.|. + .++++ .+.||. +++|++...
T Consensus 239 ~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 239 HPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp SCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 268888888 3 33333 334433 899999865
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.77 E-value=5.3e-18 Score=164.96 Aligned_cols=229 Identities=17% Similarity=0.064 Sum_probs=156.5
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEc
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGM 250 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (432)
+.+++|+.... .+...+..+++++++.++++++.|+ +++|+....... .......
T Consensus 23 ~~vri~~~~~~--------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~--~~~~~~~-------------- 77 (434)
T 2oit_A 23 KKVRIFDSPEE--------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ--NKPGDDP-------------- 77 (434)
T ss_dssp CEEECSCCCSS--------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC--CCTTCCT--------------
T ss_pred eeEEecCCccc--------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh--cccccCc--------------
Confidence 45777765321 2345688899999999999999998 899875421100 0000000
Q ss_pred CCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEE----EEECCCcEEEEECCCCC-----C-CccccceeeeccccC
Q 014003 251 PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLF----AGAQDGNILVWKGIPNT-----Q-NPFQLAALLKGHTRP 318 (432)
Q Consensus 251 ~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~----~g~~dg~i~~wd~~~~~-----~-~~~~~~~~~~~h~~~ 318 (432)
..+..... .....+...|.+++|+++ +|+ +|+.|+.|++||+.+.. . ........+.+|...
T Consensus 78 ---~~~~~~~~---~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~ 151 (434)
T 2oit_A 78 ---NKIVDKVQ---GLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGM 151 (434)
T ss_dssp ---TCEEECCC---CEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGS
T ss_pred ---ccccccCc---cccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCc
Confidence 00000000 011235678999999988 777 67889999999987641 1 111224556779999
Q ss_pred eEEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEe
Q 014003 319 VTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 319 v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (432)
|.+++|+ +++|++++.||+|++||++++..+....+|...+.+++|+ +++|++|+.||.|++||++ ++....+.
T Consensus 152 V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~ 230 (434)
T 2oit_A 152 VIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIP 230 (434)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEEC
T ss_pred eEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccccc
Confidence 9999997 6789999999999999999998887778899999999998 7899999999999999998 44444443
Q ss_pred eccC---CcceEEEeeeeCCCCCcEEEEEeCCCe------EEEeeCC
Q 014003 394 THNE---DHGVLALGGLNDPDGNPVLICSCNDDS------VHLYELP 431 (432)
Q Consensus 394 ~~~~---~~~~~~~~~~~sp~g~~~l~sg~~Dg~------I~iwdl~ 431 (432)
.+.. ........+.|++++..+++.+..||. +++|+++
T Consensus 231 ~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 231 CPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp CCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred CCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence 3322 111233445567887744455556644 8899986
No 149
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.77 E-value=5.2e-17 Score=155.19 Aligned_cols=246 Identities=13% Similarity=-0.004 Sum_probs=161.5
Q ss_pred EEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceee-----EEECCCEEE
Q 014003 173 WHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS-----LICEGPWVF 247 (432)
Q Consensus 173 i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~-----~~~~~~~l~ 247 (432)
|.+||+.++ +......+|...+..++|+|+++.|+.++.++.|.+||+.+++............. ..+++..++
T Consensus 62 l~~~d~~~g-~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~ 140 (388)
T 3pe7_A 62 YYLLDLNTQ-VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLV 140 (388)
T ss_dssp EEEEETTTC-EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEE
T ss_pred EEEEeCCCC-ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeec
Confidence 456666665 44555556666666778999999999999999999999999988777765544321 124666665
Q ss_pred EE-----------------------cCCeEEEEEccCCceEeecCCcCCEEEEEEcC-C--EEEEEECC------CcEEE
Q 014003 248 VG-----------------------MPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN-E--MLFAGAQD------GNILV 295 (432)
Q Consensus 248 ~~-----------------------~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~-~--~l~~g~~d------g~i~~ 295 (432)
+. .+..|.+||+.+++...+..+...+..+.++| + .++....+ ..|.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~ 220 (388)
T 3pe7_A 141 GIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWL 220 (388)
T ss_dssp EEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEE
T ss_pred cccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEE
Confidence 32 23689999999998777777777889999999 7 66665553 37888
Q ss_pred EECCCCCCCccccceeeeccc--cCeEEEEEe--CCEEEEEeC-CC----eEEEEECCCCce--EEEecCCC-----CCc
Q 014003 296 WKGIPNTQNPFQLAALLKGHT--RPVTCLAVG--GKRLYSGSM-DN----TIRVWDLDTLEA--VMTLNGHT-----DAP 359 (432)
Q Consensus 296 wd~~~~~~~~~~~~~~~~~h~--~~v~~l~~~--~~~l~sgs~-dg----~I~vwd~~~~~~--~~~~~~~~-----~~v 359 (432)
+|...+. ...+..+. ..+..+.|+ |+.|+..+. ++ .|++||+.+++. +..+.++. ..-
T Consensus 221 ~d~~~~~------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 294 (388)
T 3pe7_A 221 INEDGTN------MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDG 294 (388)
T ss_dssp EETTSCC------CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTS
T ss_pred EeCCCCc------eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCC
Confidence 8876653 22233333 346677886 776654333 22 399999999874 33443310 011
Q ss_pred EEEEEcCCEEEEE---------eCCCcEEEEEcCCCCceeEEeeccC-----------CcceEEEeeeeCCCCCcEEEEE
Q 014003 360 MSLLCWDQYLLSC---------SLDNTIKVWIMTEEGNLEVAYTHNE-----------DHGVLALGGLNDPDGNPVLICS 419 (432)
Q Consensus 360 ~~~~~~~~~l~s~---------s~dg~i~iwd~~~~~~~~~~~~~~~-----------~~~~~~~~~~~sp~g~~~l~sg 419 (432)
..++.+++.|+.. ..+..|++||+.+++. ..+..+.. .+... .|+|||+.+++++
T Consensus 295 ~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~----~~spDg~~l~~~s 369 (388)
T 3pe7_A 295 SLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHP----SFTPDDKQILFTS 369 (388)
T ss_dssp SEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCC----EECTTSSEEEEEE
T ss_pred CeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCc----cCCCCCCEEEEEe
Confidence 1344456666543 4567899999987654 34444443 23333 4599999677777
Q ss_pred eCCCeEEEeeC
Q 014003 420 CNDDSVHLYEL 430 (432)
Q Consensus 420 ~~Dg~I~iwdl 430 (432)
..+|...||.+
T Consensus 370 ~~~g~~~l~~~ 380 (388)
T 3pe7_A 370 DVHGKPALYLA 380 (388)
T ss_dssp CTTSSCEEEEE
T ss_pred cCCCceeEEEE
Confidence 77888777754
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.76 E-value=3.1e-15 Score=141.60 Aligned_cols=256 Identities=13% Similarity=0.182 Sum_probs=164.5
Q ss_pred CCCCeEEEEeCC--CC-cEEEEEEecccCcEEEEEecCCCCEEEEEeCC----CcEEEEeCCC--Cce--eEEEe-CCCc
Q 014003 168 DECRFWHSWFCG--EG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD----GTVQLWDCHT--GQS--ASVIN-LGAE 235 (432)
Q Consensus 168 ~~d~~i~vw~~~--~~-~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~D----g~v~iWd~~~--~~~--~~~~~-~~~~ 235 (432)
+.++.|.+|.++ ++ .+.+..+ |...+..++|+|++++|++++.+ +.|.+|++.. ++. +.... ....
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ 101 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGAD 101 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSC
T ss_pred CCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCC
Confidence 456789999773 33 2333333 78888899999999999999986 7999998865 433 22333 2334
Q ss_pred eeeEEECCCEEEEE--cCCeEEEEEccCCceEe-------ecC--------CcCCEEEEEEcCC--EEEEEE-CCCcEEE
Q 014003 236 VGSLICEGPWVFVG--MPNVVKAWHIESSAEFS-------LDG--------PVGEVYSMVVANE--MLFAGA-QDGNILV 295 (432)
Q Consensus 236 ~~~~~~~~~~l~~~--~~~~i~vwd~~~~~~~~-------~~~--------~~~~v~~l~~~~~--~l~~g~-~dg~i~~ 295 (432)
...+..++.+++++ .++.+.+|++.....+. ..+ +...+.+++++|+ +++++. .++.|.+
T Consensus 102 p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v 181 (361)
T 3scy_A 102 PCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHK 181 (361)
T ss_dssp EEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred cEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEE
Confidence 44445588877665 57899999997543221 111 1234578999988 455554 5889999
Q ss_pred EECCCCCC----Ccccc----ceeeeccccCeEEEEEe--CCEEEEEe-CCCeEEEEECCCCce--EEEec---CCCCCc
Q 014003 296 WKGIPNTQ----NPFQL----AALLKGHTRPVTCLAVG--GKRLYSGS-MDNTIRVWDLDTLEA--VMTLN---GHTDAP 359 (432)
Q Consensus 296 wd~~~~~~----~~~~~----~~~~~~h~~~v~~l~~~--~~~l~sgs-~dg~I~vwd~~~~~~--~~~~~---~~~~~v 359 (432)
|++..... ..... ......+......++|+ ++++++++ .++.|.+||+++++. +..+. .+....
T Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~ 261 (361)
T 3scy_A 182 FNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGS 261 (361)
T ss_dssp EEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCE
T ss_pred EEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCc
Confidence 99876531 00000 11122334557788997 77887777 689999999987754 33332 233445
Q ss_pred EEEEEc--CCEEEEEeC--CCcEEEEEcCC--CC--ceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 360 MSLLCW--DQYLLSCSL--DNTIKVWIMTE--EG--NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 360 ~~~~~~--~~~l~s~s~--dg~i~iwd~~~--~~--~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
..+.++ +++|+++.. ++.|.+|++.. ++ .+..+.. ......+++ +|+|+.+++++..++.|.+|++
T Consensus 262 ~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~----spdg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 262 GDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFII----TPNGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp EEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEE----CTTSCEEEEEETTTTEEEEEEE
T ss_pred ccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEE----CCCCCEEEEEECCCCCEEEEEE
Confidence 677777 788866665 48999999962 33 1222222 233445555 8999944444447899999754
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.75 E-value=4.5e-17 Score=168.79 Aligned_cols=311 Identities=6% Similarity=-0.059 Sum_probs=195.3
Q ss_pred CCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCC----
Q 014003 94 PSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDE---- 169 (432)
Q Consensus 94 ~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---- 169 (432)
.+++|+|||++++++. ||+|++|++.++......... ... ......+.+++.+..++.++.
T Consensus 19 ~~~~~s~dg~~~~~~~-d~~i~~~~~~~g~~~~~~~~~-~~~-------------~~~~~~~~~SpDg~~la~~~~~~~~ 83 (719)
T 1z68_A 19 FFPNWISGQEYLHQSA-DNNIVLYNIETGQSYTILSNR-TMK-------------SVNASNYGLSPDRQFVYLESDYSKL 83 (719)
T ss_dssp CCCEESSSSEEEEECT-TSCEEEEESSSCCEEEEECHH-HHH-------------TTTCSEEEECTTSSEEEEEEEEEEC
T ss_pred CccEECCCCeEEEEcC-CCCEEEEEcCCCcEEEEEccc-ccc-------------ccceeeEEECCCCCeEEEEecCcee
Confidence 5889999999888775 999999987765421000000 000 001245667777777777765
Q ss_pred -----CCeEEEEeCCCCcEEE--EEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC--------
Q 014003 170 -----CRFWHSWFCGEGFTML--AKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA-------- 234 (432)
Q Consensus 170 -----d~~i~vw~~~~~~~~~--~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~-------- 234 (432)
++.|++||++++ +.+ ..+ ...+..++|+|||+.|+.++ |++|++||+.+++.........
T Consensus 84 ~~~s~~~~i~~~d~~~g-~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~ 158 (719)
T 1z68_A 84 WRYSYTATYYIYDLSNG-EFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGI 158 (719)
T ss_dssp SSSCEEEEEEEEETTTT-EECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESS
T ss_pred EEeecceEEEEEECCCC-ccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccc
Confidence 789999999887 331 122 35688999999999999986 7899999999887654332221
Q ss_pred -------------ceeeEEECCCEEEEE-cCC----------------------------------eEEEEEccCCceE-
Q 014003 235 -------------EVGSLICEGPWVFVG-MPN----------------------------------VVKAWHIESSAEF- 265 (432)
Q Consensus 235 -------------~~~~~~~~~~~l~~~-~~~----------------------------------~i~vwd~~~~~~~- 265 (432)
......++++.|+.+ .+. .|++||+.+++..
T Consensus 159 ~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~ 238 (719)
T 1z68_A 159 PDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVG 238 (719)
T ss_dssp CCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHC
T ss_pred ccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccc
Confidence 123344688877754 221 7889999887641
Q ss_pred --e------ecCCcCCEEEEEEcCC--EEEEEECC----CcEEEEE----CCCCCCCccccce-eeeccccCeE-----E
Q 014003 266 --S------LDGPVGEVYSMVVANE--MLFAGAQD----GNILVWK----GIPNTQNPFQLAA-LLKGHTRPVT-----C 321 (432)
Q Consensus 266 --~------~~~~~~~v~~l~~~~~--~l~~g~~d----g~i~~wd----~~~~~~~~~~~~~-~~~~h~~~v~-----~ 321 (432)
. +..+...+.+++|+|+ ++++.... ..|.+|| ..+++.. .... ....|...+. .
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~ 316 (719)
T 1z68_A 239 PQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP--KTQEHIEESRTGWAGGFFVST 316 (719)
T ss_dssp CEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC--GGGEEEEECSSSCSSSSSCCC
T ss_pred eeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE--EEEecccccCCceEccccCCc
Confidence 2 2357778999999999 44443322 2488899 6665421 1111 0135665555 6
Q ss_pred EEEe--CCEEE--EEeCCC--eEEEEECCCCceEEEecCCCCCcEEEEEc-CCEEEEEeCC-----CcEEEEEcCC--CC
Q 014003 322 LAVG--GKRLY--SGSMDN--TIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLD-----NTIKVWIMTE--EG 387 (432)
Q Consensus 322 l~~~--~~~l~--sgs~dg--~I~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~s~d-----g~i~iwd~~~--~~ 387 (432)
+.|+ |+.++ ++..+| .|.+||+.+++ ...+..+...+..+.++ ++.|+..+.+ +.+++|.+.. +.
T Consensus 317 ~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (719)
T 1z68_A 317 PVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYP 395 (719)
T ss_dssp CEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSS
T ss_pred cEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCC
Confidence 6776 66444 344555 67778887776 45666555556555444 6666666654 8899998865 21
Q ss_pred -ceeEEee----ccCCcceEEEeeeeCCCCCcEEEEEeCC--CeEEEeeCC
Q 014003 388 -NLEVAYT----HNEDHGVLALGGLNDPDGNPVLICSCND--DSVHLYELP 431 (432)
Q Consensus 388 -~~~~~~~----~~~~~~~~~~~~~~sp~g~~~l~sg~~D--g~I~iwdl~ 431 (432)
....+.. +........ |+|+++.++++++.+ ..+.+||+.
T Consensus 396 ~~~~~l~~~~~~~~~~~~~~~----~s~dg~~l~~~~s~~~~p~~~l~d~~ 442 (719)
T 1z68_A 396 PSKKCVTCHLRKERCQYYTAS----FSDYAKYYALVCYGPGIPISTLHDGR 442 (719)
T ss_dssp CCEEESSTTTTTTTBCBEEEE----ECGGGSSEEEEECCBSSCEEEEECSS
T ss_pred CCceeccCccCCCCCceEEEE----ECCCCCEEEEEcCCCCCCeEEEEECC
Confidence 1222221 222333333 489998676666544 467888864
No 152
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.74 E-value=9.1e-17 Score=162.39 Aligned_cols=255 Identities=9% Similarity=0.011 Sum_probs=180.0
Q ss_pred CceEEeeccCceeeCCC-CCeEEEEeCCCCcEEEEEEeccc-CcEEEEEecCCCCEEEEEeC---CCcEEEEeCCC---C
Q 014003 153 KNVCYHWLSGNCVKGDE-CRFWHSWFCGEGFTMLAKLEGHK-KAVSGIALPLRSDKLYSGSR---DGTVQLWDCHT---G 224 (432)
Q Consensus 153 ~~~~~~~~~~~~~~g~~-d~~i~vw~~~~~~~~~~~l~~H~-~~V~~l~~~~~~~~l~s~s~---Dg~v~iWd~~~---~ 224 (432)
..+.+.+.+..+++++. |+.++||+++++ +.. .+..|. ..|..++|+|| +.+++++. +...++|.+.. +
T Consensus 25 ~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g 101 (582)
T 3o4h_A 25 YSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-ETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPG 101 (582)
T ss_dssp EEEEEEETTTEEEEEEEETTEEEEEEEETT-EEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTT
T ss_pred heeecCCCCCeEEEEEccCCceeEEEEcCC-CcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCC
Confidence 35677888888888776 999999999665 443 455555 68999999999 78888775 55566665533 2
Q ss_pred ceeEEEeCC--CceeeEEECCC--EEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECC----CcEE
Q 014003 225 QSASVINLG--AEVGSLICEGP--WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQD----GNIL 294 (432)
Q Consensus 225 ~~~~~~~~~--~~~~~~~~~~~--~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~d----g~i~ 294 (432)
... .+... .....+.++++ .++.+.++.+.+||+++++...+..+.. .++.++|+ .+++++.+ +.|+
T Consensus 102 ~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~ 178 (582)
T 3o4h_A 102 EEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLF 178 (582)
T ss_dssp CCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEE
T ss_pred ccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEE
Confidence 222 33222 22345556664 3445566667799999988665554444 67777777 77777766 7899
Q ss_pred EEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCC--eEEEEECCCCceEEEecCCCCCcEEEE-------
Q 014003 295 VWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN--TIRVWDLDTLEAVMTLNGHTDAPMSLL------- 363 (432)
Q Consensus 295 ~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg--~I~vwd~~~~~~~~~~~~~~~~v~~~~------- 363 (432)
+||+.+++ ...+..|...+..++|+ |+.|+++..++ .|++||+++++.. .+.+|...+..+.
T Consensus 179 ~~d~~~g~------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3o4h_A 179 TSNLSSGG------LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL 251 (582)
T ss_dssp EEETTTCC------CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred EEcCCCCC------ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence 99998775 33566788888999997 89999888888 9999999999888 7778877766665
Q ss_pred -Ec--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCe---EEEeeCC
Q 014003 364 -CW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDS---VHLYELP 431 (432)
Q Consensus 364 -~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~---I~iwdl~ 431 (432)
|+ +.++++++.|+++++|++ ++... .....+..+ .++ +|+ ++++++.+.. |.+||+.
T Consensus 252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~----~~s-dg~-~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 252 GYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRV----VLW-RGK-LVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEE----EEE-TTE-EEEEEEETTEEEEEEEETTC
T ss_pred eEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEE----Eec-CCE-EEEEEcCCCCCCeEEEEcCC
Confidence 66 678899999999999999 43322 222223333 347 787 6777766644 6666653
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.74 E-value=2.3e-15 Score=141.61 Aligned_cols=256 Identities=14% Similarity=0.160 Sum_probs=160.3
Q ss_pred CCCCeEEEEeCC--CCcEEEEEEecccCcEEEEEecCCCCEEEEEeC---CCcEEEEeCCCCce--eEEE-eCCCcee--
Q 014003 168 DECRFWHSWFCG--EGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR---DGTVQLWDCHTGQS--ASVI-NLGAEVG-- 237 (432)
Q Consensus 168 ~~d~~i~vw~~~--~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~---Dg~v~iWd~~~~~~--~~~~-~~~~~~~-- 237 (432)
+.++.|.+|.++ ++.........+...+..++|+|+|+ |++++. ++.|.+||+.+++. +..+ .......
T Consensus 13 ~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 13 KTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp SSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred CCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 345667777764 44222223455667888999999999 555554 68999999987763 2222 1233333
Q ss_pred eEEECCCEEEEE--cCCeEEEEEccC-Cce--Ee-ecC---------CcCCEEEEEEcCC--EEEEEECCCcEEEEECCC
Q 014003 238 SLICEGPWVFVG--MPNVVKAWHIES-SAE--FS-LDG---------PVGEVYSMVVANE--MLFAGAQDGNILVWKGIP 300 (432)
Q Consensus 238 ~~~~~~~~l~~~--~~~~i~vwd~~~-~~~--~~-~~~---------~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~ 300 (432)
.+.+++++++++ .++.+.+|++.. +.. +. ... ....+.+++++|+ ++++...++.|.+||+..
T Consensus 92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence 345688866655 578999999963 222 11 111 1234888999988 566666788999999983
Q ss_pred CCCCccccceeeecc-ccCeEEEEEe--CCEEEE-EeCCCeEEEEECCC--Cce--EEEecCCC------CCcEEEEEc-
Q 014003 301 NTQNPFQLAALLKGH-TRPVTCLAVG--GKRLYS-GSMDNTIRVWDLDT--LEA--VMTLNGHT------DAPMSLLCW- 365 (432)
Q Consensus 301 ~~~~~~~~~~~~~~h-~~~v~~l~~~--~~~l~s-gs~dg~I~vwd~~~--~~~--~~~~~~~~------~~v~~~~~~- 365 (432)
... ......+..+ ......++|+ |+++++ +..++.|.+|+++. ++. +..+.... ..+..++++
T Consensus 172 ~g~--~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 172 AGQ--LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp TSC--EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCc--EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 221 1222222222 2356778887 776655 56789999999874 543 33333322 336677777
Q ss_pred -CCEE-EEEeCCCcEEEEEcCCCCc---eeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 366 -DQYL-LSCSLDNTIKVWIMTEEGN---LEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 366 -~~~l-~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
+++| ++...++.|.+|++..... +..+..+......+++ +|+|+.+++++..++.|.+|++
T Consensus 250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~----spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDL----DPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEE----CTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEE----CCCCCEEEEEEcCCCcEEEEEE
Confidence 6766 5566789999999974332 2233333334555555 8999944444455699999954
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.74 E-value=6.7e-16 Score=144.88 Aligned_cols=276 Identities=8% Similarity=-0.028 Sum_probs=175.7
Q ss_pred CCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccC-ceeeCCCCCe
Q 014003 94 PSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSG-NCVKGDECRF 172 (432)
Q Consensus 94 ~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~ 172 (432)
++++++++++++++++.|++|++||..++... ..... .. ...+..+++.+.+. .++++..++.
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~----~~~~~--~~----------~~~~~~~~~s~dg~~~~v~~~~~~~ 66 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTVY----KSCVM--PD----------KFGPGTAMMAPDNRTAYVLNNHYGD 66 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETTTTEEE----EEEEC--SS----------CCSSCEEEECTTSSEEEEEETTTTE
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECCCCcEE----EEEec--CC----------CCCCceeEECCCCCEEEEEeCCCCc
Confidence 56789999999999999999999987654321 00000 00 00124566666666 3456678899
Q ss_pred EEEEeCCCCcEEEEEEecc------cCcEEEEEecCCCCEEEEEeCC------------CcEEEEeCCCC---ceeEEEe
Q 014003 173 WHSWFCGEGFTMLAKLEGH------KKAVSGIALPLRSDKLYSGSRD------------GTVQLWDCHTG---QSASVIN 231 (432)
Q Consensus 173 i~vw~~~~~~~~~~~l~~H------~~~V~~l~~~~~~~~l~s~s~D------------g~v~iWd~~~~---~~~~~~~ 231 (432)
|.+||+.++ +.+..+..+ ...+.+++|+|+|++|++++.+ +.|.+||+.++ +.+..+.
T Consensus 67 i~~~d~~t~-~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 145 (349)
T 1jmx_B 67 IYGIDLDTC-KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP 145 (349)
T ss_dssp EEEEETTTT-EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE
T ss_pred EEEEeCCCC-cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc
Confidence 999999887 556555532 2347889999999999999865 89999999884 3445555
Q ss_pred CCCceeeEE--ECCCEEEEEcCCeEEEEEccCCceEeecCCcC-------------------------CEEEEEEcCC--
Q 014003 232 LGAEVGSLI--CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVG-------------------------EVYSMVVANE-- 282 (432)
Q Consensus 232 ~~~~~~~~~--~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~-------------------------~v~~l~~~~~-- 282 (432)
....+.++. ++++ +++. ++.|.+||+.+++......... ....+.+.++
T Consensus 146 ~~~~~~~~~~s~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 223 (349)
T 1jmx_B 146 MPRQVYLMRAADDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK 223 (349)
T ss_dssp CCSSCCCEEECTTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred CCCcccceeECCCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence 554444443 5777 4443 4459999999887653322111 2223344321
Q ss_pred -EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEE---eCCEEEEEeCCCeEEEEECCCCceEEEecCCCCC
Q 014003 283 -MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV---GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA 358 (432)
Q Consensus 283 -~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~ 358 (432)
..........+..+|..+++. . ...+..+...+..+++ ++++++++ ++.|.+||+++++.+..+... ..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~ 296 (349)
T 1jmx_B 224 QDPATADLLYGYLSVDLKTGKT---H-TQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HT 296 (349)
T ss_dssp ---CCCEEEEEEEEEETTTCCE---E-EEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SC
T ss_pred CCccccccceeEEEEeccCCcE---E-ecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CC
Confidence 000000001122244444331 1 1112234455666766 46788887 899999999999988887643 34
Q ss_pred cEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeec
Q 014003 359 PMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTH 395 (432)
Q Consensus 359 v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 395 (432)
+.+++++ +++|++++.++.|.+||+.+.+.+..+...
T Consensus 297 ~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 297 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp CCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred ccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 5677777 678888888999999999988776665443
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=1.1e-15 Score=143.34 Aligned_cols=222 Identities=12% Similarity=0.098 Sum_probs=155.3
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC--ceeeE--EECCCEEEEE--cCCeEEEEEccCCceEeecC-
Q 014003 197 GIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA--EVGSL--ICEGPWVFVG--MPNVVKAWHIESSAEFSLDG- 269 (432)
Q Consensus 197 ~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~i~vwd~~~~~~~~~~~- 269 (432)
.+++++++.++++++.+++|.+||+.+++.+..+.... ....+ .++++.++++ .++.|.+||+.+++......
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45678889999999999999999999999988887655 34433 3567755543 57899999999887653222
Q ss_pred C------cCCEEEEEEcCC--EEEEEECC------------CcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CC
Q 014003 270 P------VGEVYSMVVANE--MLFAGAQD------------GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GK 327 (432)
Q Consensus 270 ~------~~~v~~l~~~~~--~l~~g~~d------------g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~ 327 (432)
. ...+..++++|+ ++++++.+ +.|.+||+.+++. .+.+..... ...+.+++|+ ++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~-~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE--AKPVRTFPM-PRQVYLMRAADDGS 160 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG--BCCSEEEEC-CSSCCCEEECTTSC
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc--cceeeeccC-CCcccceeECCCCc
Confidence 1 223678889887 77777754 8999999987542 122333333 3357788886 67
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCC--------------------------------------------------
Q 014003 328 RLYSGSMDNTIRVWDLDTLEAVMTLNGHTD-------------------------------------------------- 357 (432)
Q Consensus 328 ~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~-------------------------------------------------- 357 (432)
+++++. .|.+||+++++.+..+..+..
T Consensus 161 -l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 237 (349)
T 1jmx_B 161 -LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS 237 (349)
T ss_dssp -EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred -EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEE
Confidence 666543 499999999998877754320
Q ss_pred ------------------CcEEEE--E-cCCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEE
Q 014003 358 ------------------APMSLL--C-WDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVL 416 (432)
Q Consensus 358 ------------------~v~~~~--~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l 416 (432)
.+..+. . .+++++++ ++.|.+||+.+.+.+..+... .....+++ +|+|+ .|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~----s~dg~-~l 309 (349)
T 1jmx_B 238 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAF----DKKGD-KL 309 (349)
T ss_dssp EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEE----CSSSS-CE
T ss_pred EeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEE----CCCCC-EE
Confidence 111222 2 45677777 889999999988766655433 23344555 89998 45
Q ss_pred EEEeCCCeEEEeeCCC
Q 014003 417 ICSCNDDSVHLYELPS 432 (432)
Q Consensus 417 ~sg~~Dg~I~iwdl~s 432 (432)
++++.++.|++||+++
T Consensus 310 ~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 310 YLGGTFNDLAVFNPDT 325 (349)
T ss_dssp EEESBSSEEEEEETTT
T ss_pred EEecCCCeEEEEeccc
Confidence 5577889999999864
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.71 E-value=5.1e-16 Score=156.87 Aligned_cols=228 Identities=11% Similarity=0.013 Sum_probs=155.8
Q ss_pred ccCcEEEEEecCCCCEEEEEeC-CCcEEEEeCCCCceeEEEeCC-CceeeEE--ECCCEEEEEc----CCeEEEEEccC-
Q 014003 191 HKKAVSGIALPLRSDKLYSGSR-DGTVQLWDCHTGQSASVINLG-AEVGSLI--CEGPWVFVGM----PNVVKAWHIES- 261 (432)
Q Consensus 191 H~~~V~~l~~~~~~~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~-~~~~~~~--~~~~~l~~~~----~~~i~vwd~~~- 261 (432)
+..+|.+++|+|||++||+++. ||+++||++.+++..+..... ..+..+. ++ ++++++. +....+|.+..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 3568999999999999999887 999999999766655544444 2444444 34 5555443 34455654432
Q ss_pred --CceEeecC-CcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEE--eCCEEEEEeCC
Q 014003 262 --SAEFSLDG-PVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV--GGKRLYSGSMD 335 (432)
Q Consensus 262 --~~~~~~~~-~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~d 335 (432)
+....+.. ....+.++.++++ .+++...++.+.+||+.+++. .. +..+.. .+++| +|+++++++.+
T Consensus 99 ~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~-----~~-l~~~~~--~~~~~spDG~~la~~~~~ 170 (582)
T 3o4h_A 99 RPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL-----RE-LARLPG--FGFVSDIRGDLIAGLGFF 170 (582)
T ss_dssp STTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE-----EE-EEEESS--CEEEEEEETTEEEEEEEE
T ss_pred CCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE-----EE-eecCCC--ceEEECCCCCEEEEEEEc
Confidence 22223222 2223455666665 455555566666999987642 22 222222 45555 49999988877
Q ss_pred ----CeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCC--cEEEEEcCCCCceeEEeeccCCcceEE----
Q 014003 336 ----NTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDN--TIKVWIMTEEGNLEVAYTHNEDHGVLA---- 403 (432)
Q Consensus 336 ----g~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~---- 403 (432)
+.|++||+.+++.. .+..|...+..++|+ |+.|+++..++ .|++||+.+++.. .+..+...+..+.
T Consensus 171 ~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 171 GGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI 248 (582)
T ss_dssp ETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred CCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence 78999999988765 677888888999988 78999888888 8999999887766 4445544443333
Q ss_pred EeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 404 LGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 404 ~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
....|+|||. ++++++.||.+++|++
T Consensus 249 ~~~~~spdg~-~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 249 TWLGYLPDGR-LAVVARREGRSAVFID 274 (582)
T ss_dssp EEEEECTTSC-EEEEEEETTEEEEEET
T ss_pred cceeEcCCCc-EEEEEEcCCcEEEEEE
Confidence 1112599995 9999999999999985
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.71 E-value=9.7e-15 Score=137.36 Aligned_cols=231 Identities=13% Similarity=0.157 Sum_probs=155.6
Q ss_pred CCceEEeeccCceeeCC---CCCeEEEEeCCCC-cEEEEEEecccCcEEEEEecCCCCEEEEEe-CCCcEEEEeCCC-Cc
Q 014003 152 PKNVCYHWLSGNCVKGD---ECRFWHSWFCGEG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGS-RDGTVQLWDCHT-GQ 225 (432)
Q Consensus 152 ~~~~~~~~~~~~~~~g~---~d~~i~vw~~~~~-~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s-~Dg~v~iWd~~~-~~ 225 (432)
+..+++.+.+. +++++ .++.|.+|++.++ .+.+..+..|...+..++|+|+|++|++++ .+++|.+|++.. +.
T Consensus 42 p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~ 120 (347)
T 3hfq_A 42 PTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA 120 (347)
T ss_dssp CCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC
T ss_pred cceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC
Confidence 44677777666 44443 3689999999665 235556667888999999999999998888 689999999963 33
Q ss_pred --eeEEEeCCC----------cee--eEEECCCEEEEE-cCCeEEEEEcc-CCceEe---ec-CCcCCEEEEEEcCC--E
Q 014003 226 --SASVINLGA----------EVG--SLICEGPWVFVG-MPNVVKAWHIE-SSAEFS---LD-GPVGEVYSMVVANE--M 283 (432)
Q Consensus 226 --~~~~~~~~~----------~~~--~~~~~~~~l~~~-~~~~i~vwd~~-~~~~~~---~~-~~~~~v~~l~~~~~--~ 283 (432)
.+..+.... .+. .+.++++++++. .++.|.+|++. ++.... .. ........++++|+ +
T Consensus 121 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~ 200 (347)
T 3hfq_A 121 LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQY 200 (347)
T ss_dssp EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCE
Confidence 233333221 122 333577755555 57899999998 444321 12 22336778999988 4
Q ss_pred EEE-EECCCcEEEEECCCCCCCccccceeeeccc------cCeEEEEEe--CCEE-EEEeCCCeEEEEECC---CCceEE
Q 014003 284 LFA-GAQDGNILVWKGIPNTQNPFQLAALLKGHT------RPVTCLAVG--GKRL-YSGSMDNTIRVWDLD---TLEAVM 350 (432)
Q Consensus 284 l~~-g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~------~~v~~l~~~--~~~l-~sgs~dg~I~vwd~~---~~~~~~ 350 (432)
+++ ...++.|.+|++...... ......+.... ..+..++|+ |++| ++...++.|.+||+. +.+.+.
T Consensus 201 l~v~~~~~~~v~v~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~ 279 (347)
T 3hfq_A 201 AFLAGELSSQIASLKYDTQTGA-FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQ 279 (347)
T ss_dssp EEEEETTTTEEEEEEEETTTTE-EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCc-eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeE
Confidence 544 567889999998752211 12222332222 347788887 7777 455668999999997 335666
Q ss_pred EecCCCCCcEEEEEc--CCEEEEEeCC-CcEEEEEcC
Q 014003 351 TLNGHTDAPMSLLCW--DQYLLSCSLD-NTIKVWIMT 384 (432)
Q Consensus 351 ~~~~~~~~v~~~~~~--~~~l~s~s~d-g~i~iwd~~ 384 (432)
.+..+...+..++++ +++|++++.+ +.|.+|+++
T Consensus 280 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 280 QISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 777666677888887 6788887764 899999654
No 158
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.70 E-value=2.6e-15 Score=136.91 Aligned_cols=214 Identities=11% Similarity=0.148 Sum_probs=150.0
Q ss_pred EEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--ECCCEEEEEcCCeEEEEEccC-CceEeec-CC-cCCEEEEEEcCC-
Q 014003 209 SGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVFVGMPNVVKAWHIES-SAEFSLD-GP-VGEVYSMVVANE- 282 (432)
Q Consensus 209 s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~vwd~~~-~~~~~~~-~~-~~~v~~l~~~~~- 282 (432)
+++.|++|++||+.+++......+...+.++. +++.+++++.++.|.+||+.+ ++..... .+ ...+.++.|+|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 35678999999999998887777777666655 588899888899999999998 7765443 33 367888999988
Q ss_pred -EEEEEE--CCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEE-EEeCCCeEEEEECCC-CceEEEecCC
Q 014003 283 -MLFAGA--QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLY-SGSMDNTIRVWDLDT-LEAVMTLNGH 355 (432)
Q Consensus 283 -~l~~g~--~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-sgs~dg~I~vwd~~~-~~~~~~~~~~ 355 (432)
.+++++ .++...+|.+..... ....+..+ ..+..++|+ ++.|+ +++.|+.++||+++. ......+..+
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGG----TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCC----CCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred CEEEEEEeCCCCcceEEEEECCCC----ceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence 788887 334555555433221 12333333 347888887 77766 788899999998532 2344667778
Q ss_pred CCCcEEEEEc--CCEEEEEe-CCCcEEEEEcC-CCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCC---------
Q 014003 356 TDAPMSLLCW--DQYLLSCS-LDNTIKVWIMT-EEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND--------- 422 (432)
Q Consensus 356 ~~~v~~~~~~--~~~l~s~s-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~D--------- 422 (432)
...+.++.++ +++|+.++ .++.+++|++. ....+..+..+...+ ....|+|+|+ +|++++.+
T Consensus 172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~s~dg~-~l~~~~~~~~~~~~~~~ 246 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGD----WFPHPSPSGD-KVVFVSYDADVFDHPRD 246 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEE----EEEEECTTSS-EEEEEEEETTCCSCCSS
T ss_pred CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCccc----CCeEECCCCC-EEEEEEcCCCCCccccc
Confidence 8888999887 67777665 59999999987 445555554444333 3345599999 55555544
Q ss_pred --CeEEEeeCCC
Q 014003 423 --DSVHLYELPS 432 (432)
Q Consensus 423 --g~I~iwdl~s 432 (432)
+.|++||+++
T Consensus 247 ~~~~l~~~d~~~ 258 (297)
T 2ojh_A 247 LDVRVQLMDMDG 258 (297)
T ss_dssp EEEEEEEEETTS
T ss_pred CceEEEEEecCC
Confidence 5699999863
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.69 E-value=2e-16 Score=163.91 Aligned_cols=268 Identities=11% Similarity=0.030 Sum_probs=174.3
Q ss_pred EEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccC---cEEEEEecCCCCEEEEEeC---------CCcEEEEeCCC
Q 014003 156 CYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKK---AVSGIALPLRSDKLYSGSR---------DGTVQLWDCHT 223 (432)
Q Consensus 156 ~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~---~V~~l~~~~~~~~l~s~s~---------Dg~v~iWd~~~ 223 (432)
.+.+.+ .++..+.|+.|++||+.++ +....+.+|.. .|.+++|+|||++|++++. |++|++||+.+
T Consensus 22 ~~s~dg-~~~~~~~d~~i~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 22 NWISGQ-EYLHQSADNNIVLYNIETG-QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp EESSSS-EEEEECTTSCEEEEESSSC-CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred EECCCC-eEEEEcCCCCEEEEEcCCC-cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 344444 3444456899999999887 45555666654 4999999999999999876 79999999999
Q ss_pred CceeEEEeCCCce--eeEEECCCEEEEEcCCeEEEEEccCCceEeec--CCcCCE-----------------EEEEEcCC
Q 014003 224 GQSASVINLGAEV--GSLICEGPWVFVGMPNVVKAWHIESSAEFSLD--GPVGEV-----------------YSMVVANE 282 (432)
Q Consensus 224 ~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~--~~~~~v-----------------~~l~~~~~ 282 (432)
++.+........+ ..+.++++.++.+.++.|++|++.+++...+. ++...+ .++.|+|+
T Consensus 100 g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPD 179 (719)
T 1z68_A 100 GEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPN 179 (719)
T ss_dssp TEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTT
T ss_pred CccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCC
Confidence 8762111122233 34557999998888999999999888765432 222222 48999998
Q ss_pred --EEEEEECCC----------------------------------cEEEEECCCCCCC---ccccceeeeccccCeEEEE
Q 014003 283 --MLFAGAQDG----------------------------------NILVWKGIPNTQN---PFQLAALLKGHTRPVTCLA 323 (432)
Q Consensus 283 --~l~~g~~dg----------------------------------~i~~wd~~~~~~~---~~~~~~~~~~h~~~v~~l~ 323 (432)
.|++++.|. .|++||+.++... .......+.+|...+..++
T Consensus 180 G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (719)
T 1z68_A 180 GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLT 259 (719)
T ss_dssp SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEE
T ss_pred CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeE
Confidence 777776542 7889998876420 0000022346788899999
Q ss_pred Ee--CCEEEEEeCC----CeEEEEE----CCCCceEEEe----cCCCCCcE-----EEEEc--CCEEE--EEeCCC--cE
Q 014003 324 VG--GKRLYSGSMD----NTIRVWD----LDTLEAVMTL----NGHTDAPM-----SLLCW--DQYLL--SCSLDN--TI 378 (432)
Q Consensus 324 ~~--~~~l~sgs~d----g~I~vwd----~~~~~~~~~~----~~~~~~v~-----~~~~~--~~~l~--s~s~dg--~i 378 (432)
|+ ++++++.... ..|.+|| +.++++...+ .+|...+. .+.|+ ++.|+ +...+| .|
T Consensus 260 ~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l 339 (719)
T 1z68_A 260 WVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHI 339 (719)
T ss_dssp ESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEE
T ss_pred EeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEE
Confidence 97 5556664332 2589999 8888766555 46666655 56666 56443 454566 46
Q ss_pred EEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeC----CCeEEEeeCC
Q 014003 379 KVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCN----DDSVHLYELP 431 (432)
Q Consensus 379 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~----Dg~I~iwdl~ 431 (432)
.+||+.+++ ...+..+...+..+.+ + +++.+++++.. ++.+++|.++
T Consensus 340 ~~~~~~~~~-~~~lt~~~~~v~~~~~----~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 340 HYIKDTVEN-AIQITSGKWEAINIFR----V-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp EEESSCSTT-CEECSCSSSCEEEEEE----E-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred EEEECCCCc-eEecccCceEEEEEEE----E-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 667776655 3333333333333333 4 77756666655 5888998753
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.68 E-value=4.5e-15 Score=154.31 Aligned_cols=322 Identities=9% Similarity=-0.058 Sum_probs=189.2
Q ss_pred CCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCCC-
Q 014003 92 SPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDEC- 170 (432)
Q Consensus 92 ~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d- 170 (432)
...+++|+|||++++++ ||+|++|++.++..... +..... ... ........+++.+..++.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~------~~~~~~--~~~----~~~~~~~~~Spdg~~l~~~~~~~ 83 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF------LENSTF--DEF----GHSINDYSISPDGQFILLEYNYV 83 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEE------ECTTTT--TTC----CSCCCEEEECTTSSEEEEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEE------Eechhh--hhh----cccccceEECCCCCEEEEEECCe
Confidence 45789999999999997 99999999877653100 000000 000 0000124556677777776655
Q ss_pred --------CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCc--e----
Q 014003 171 --------RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE--V---- 236 (432)
Q Consensus 171 --------~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~--~---- 236 (432)
+.+.+||+.++ + ...+..|...+...+|||||+.||.++ |+.|.+||+.+++..+....+.. +
T Consensus 84 ~~~r~~~~~~~~~~d~~~~-~-~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~ 160 (740)
T 4a5s_A 84 KQWRHSYTASYDIYDLNKR-Q-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGI 160 (740)
T ss_dssp ECSSSCEEEEEEEEETTTT-E-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESB
T ss_pred eeEEEccceEEEEEECCCC-c-EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCc
Confidence 56779999987 4 345778889999999999999999885 68999999998875543221111 1
Q ss_pred ---------------eeEEECCCEEEEEc--CC-----------------------------------eEEEEEccC---
Q 014003 237 ---------------GSLICEGPWVFVGM--PN-----------------------------------VVKAWHIES--- 261 (432)
Q Consensus 237 ---------------~~~~~~~~~l~~~~--~~-----------------------------------~i~vwd~~~--- 261 (432)
....++++.|+... +. .|.+||+.+
T Consensus 161 ~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~ 240 (740)
T 4a5s_A 161 TDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS 240 (740)
T ss_dssp CCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCS
T ss_pred ccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCC
Confidence 23446787666431 11 588899988
Q ss_pred C---ceEeecC------CcCCEEEEEEcCC--EEEEEEC----CCcEEEEECCCCCCCc-cccceee--eccccCeE---
Q 014003 262 S---AEFSLDG------PVGEVYSMVVANE--MLFAGAQ----DGNILVWKGIPNTQNP-FQLAALL--KGHTRPVT--- 320 (432)
Q Consensus 262 ~---~~~~~~~------~~~~v~~l~~~~~--~l~~g~~----dg~i~~wd~~~~~~~~-~~~~~~~--~~h~~~v~--- 320 (432)
+ +...+.. +...+..+.|+|+ .++.... +..|.+||+.+++... ......+ ..|...+.
T Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~ 320 (740)
T 4a5s_A 241 VTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFR 320 (740)
T ss_dssp SSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSS
T ss_pred CCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCc
Confidence 7 4444443 6677899999998 3444332 3379999998875100 0011111 34554443
Q ss_pred --EEEEe--CCEEE-EEeC-C--CeEEEEECCCCceEEEecCCCCCcEEEE-EcCCEEEEEeCC-----CcEEEEEcCCC
Q 014003 321 --CLAVG--GKRLY-SGSM-D--NTIRVWDLDTLEAVMTLNGHTDAPMSLL-CWDQYLLSCSLD-----NTIKVWIMTEE 386 (432)
Q Consensus 321 --~l~~~--~~~l~-sgs~-d--g~I~vwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~s~s~d-----g~i~iwd~~~~ 386 (432)
...|+ |+.++ ..+. + ..|++||+.+++... +......+..+. ++++.|+..+.. +...||.+...
T Consensus 321 ~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~ 399 (740)
T 4a5s_A 321 PSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLI 399 (740)
T ss_dssp CCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETT
T ss_pred CCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECC
Confidence 56675 77766 5553 3 468899998776654 433344455443 556655544433 44555554432
Q ss_pred Ccee--EEeeccCCcceEEEeeeeCCCCCcEEEEEeCC--CeEEEeeCC
Q 014003 387 GNLE--VAYTHNEDHGVLALGGLNDPDGNPVLICSCND--DSVHLYELP 431 (432)
Q Consensus 387 ~~~~--~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~D--g~I~iwdl~ 431 (432)
.... .+...............|+|+++.++++.+.. ..+.+++..
T Consensus 400 g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 400 DYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp EEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred CCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 2211 22111000011123334599999555555432 245666543
No 161
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.67 E-value=2.1e-15 Score=156.20 Aligned_cols=229 Identities=10% Similarity=0.032 Sum_probs=160.9
Q ss_pred cEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCc----eee--EEECCCEEEEEcC----------CeEEEE
Q 014003 194 AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE----VGS--LICEGPWVFVGMP----------NVVKAW 257 (432)
Q Consensus 194 ~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~----~~~--~~~~~~~l~~~~~----------~~i~vw 257 (432)
.+.+++|+|+|+++++ +.||+|++||+.+++....+..... +.. +.++++.++.+.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678899999998877 7899999999999998877765432 443 4468888776633 789999
Q ss_pred EccCCceEeecC---CcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccC--------------
Q 014003 258 HIESSAEFSLDG---PVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRP-------------- 318 (432)
Q Consensus 258 d~~~~~~~~~~~---~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~-------------- 318 (432)
|+.+++...+.. +...+..++|+|+ .|+.++. +.|++||+.++.. ......+...
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-----~~~~~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-----IRVVSTGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-----EEEECCCBTTTEEEEECCHHHHHT
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-----EEEecCCCCCceECcccceeEEEE
Confidence 999987644433 3334788999998 7777765 7999999988653 2222222222
Q ss_pred ----eEEEEEe--CCEEEEEeCCC----------------------------------eEEEEECCCCceEEEecCC---
Q 014003 319 ----VTCLAVG--GKRLYSGSMDN----------------------------------TIRVWDLDTLEAVMTLNGH--- 355 (432)
Q Consensus 319 ----v~~l~~~--~~~l~sgs~dg----------------------------------~I~vwd~~~~~~~~~~~~~--- 355 (432)
+.+++|+ |+.|++++.|+ .|++||+.+++....+..+
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 250 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP 250 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC
Confidence 3778887 88998887653 8999999998876777654
Q ss_pred ---CCCcEEEEEc--CCEEEEEeC----CCcEEEEEcCCCCceeEEeecc-CCcceEEEeeeeCCCCCcEEEE-EeCCC-
Q 014003 356 ---TDAPMSLLCW--DQYLLSCSL----DNTIKVWIMTEEGNLEVAYTHN-EDHGVLALGGLNDPDGNPVLIC-SCNDD- 423 (432)
Q Consensus 356 ---~~~v~~~~~~--~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~sp~g~~~l~s-g~~Dg- 423 (432)
...+..+.|+ +++|++.+. +..|.+||+.+++.......+. ..+........|+|||+.+++. +..++
T Consensus 251 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 330 (723)
T 1xfd_A 251 RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG 330 (723)
T ss_dssp GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS
T ss_pred CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCC
Confidence 4567788888 567766643 3579999999887665544332 2221000133459999966665 66777
Q ss_pred -----eEEEee
Q 014003 424 -----SVHLYE 429 (432)
Q Consensus 424 -----~I~iwd 429 (432)
.|.+||
T Consensus 331 ~~~~~~l~~~d 341 (723)
T 1xfd_A 331 RGKFYHITVSS 341 (723)
T ss_dssp SSCEEEEEEEC
T ss_pred CcceeEEEEEe
Confidence 566676
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.67 E-value=1.6e-13 Score=129.82 Aligned_cols=272 Identities=10% Similarity=0.127 Sum_probs=170.7
Q ss_pred CCCCCCCceecCCC----CCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCCC
Q 014003 95 SYNCPKNNVRVSSG----SEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDEC 170 (432)
Q Consensus 95 ~~~~s~~g~~las~----~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 170 (432)
..+..++..++..| +.++.|.+|.++...... ..........+..+++.+.+..+++++.+
T Consensus 6 ~~~~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~---------------~~~~~~~~~~p~~l~~spdg~~l~~~~~~ 70 (361)
T 3scy_A 6 DPSTTDSELTMLVGTYTSGNSKGIYTFRFNEETGES---------------LPLSDAEVANPSYLIPSADGKFVYSVNEF 70 (361)
T ss_dssp CCCGGGGEEEEEEEECCSSSCCEEEEEEEETTTCCE---------------EEEEEEECSCCCSEEECTTSSEEEEEECC
T ss_pred ChhhCCCceEEEEEeccCCCCCCEEEEEEeCCCCCE---------------EEeecccCCCCceEEECCCCCEEEEEEcc
Confidence 44445555555444 457889999654321100 00001122334567788888777776664
Q ss_pred ----CeEEEEeCCC--C-cEEEEEEecccCcEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCcee----EEEeCCC----
Q 014003 171 ----RFWHSWFCGE--G-FTMLAKLEGHKKAVSGIALPLRSDKLYSGS-RDGTVQLWDCHTGQSA----SVINLGA---- 234 (432)
Q Consensus 171 ----~~i~vw~~~~--~-~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s-~Dg~v~iWd~~~~~~~----~~~~~~~---- 234 (432)
+.|.+|+++. + .+.+.....+......+++ ++++|++++ .+++|.+|++.....+ .......
T Consensus 71 ~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~ 148 (361)
T 3scy_A 71 SKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPD 148 (361)
T ss_dssp SSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSC
T ss_pred CCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCC
Confidence 7999999854 3 2344455556677888888 788777776 5789999999754322 2222111
Q ss_pred ---------ceeeEEECCCEEEEE--cCCeEEEEEccCCce--------------EeecCCcCCEEEEEEcCC--EEEEE
Q 014003 235 ---------EVGSLICEGPWVFVG--MPNVVKAWHIESSAE--------------FSLDGPVGEVYSMVVANE--MLFAG 287 (432)
Q Consensus 235 ---------~~~~~~~~~~~l~~~--~~~~i~vwd~~~~~~--------------~~~~~~~~~v~~l~~~~~--~l~~g 287 (432)
....+.+++++++++ .++.+.+|++..... ............++|+|+ +++++
T Consensus 149 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 228 (361)
T 3scy_A 149 KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLI 228 (361)
T ss_dssp TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEE
Confidence 112344688866554 478999998875431 222344556788999998 66666
Q ss_pred E-CCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCC--CeEEEEECC--CCc--eEEEecCCCCC
Q 014003 288 A-QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMD--NTIRVWDLD--TLE--AVMTLNGHTDA 358 (432)
Q Consensus 288 ~-~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d--g~I~vwd~~--~~~--~~~~~~~~~~~ 358 (432)
+ .++.|.+||+.++.............+......++|+ +++|+++..+ +.|.+|++. +++ .+..+.. ...
T Consensus 229 ~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~ 307 (361)
T 3scy_A 229 NEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIH 307 (361)
T ss_dssp ETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSC
T ss_pred cCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCC
Confidence 6 6899999999865321111112222334456788887 8888776654 899999985 444 4555554 456
Q ss_pred cEEEEEc--CCEEEEEe-CCCcEEEEEcC
Q 014003 359 PMSLLCW--DQYLLSCS-LDNTIKVWIMT 384 (432)
Q Consensus 359 v~~~~~~--~~~l~s~s-~dg~i~iwd~~ 384 (432)
+..++++ +++|++++ .++.|.+|+++
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 308 PRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp CCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 7778887 67888877 67899997665
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.67 E-value=4.7e-14 Score=133.89 Aligned_cols=252 Identities=10% Similarity=0.131 Sum_probs=160.5
Q ss_pred CeEEEEeC--CCCc-EEEEEEe-cccCcEEEEEecCCCCEEEEEeCCCcEEEEeCC-CCceeEEEeC--CCcee--eEEE
Q 014003 171 RFWHSWFC--GEGF-TMLAKLE-GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH-TGQSASVINL--GAEVG--SLIC 241 (432)
Q Consensus 171 ~~i~vw~~--~~~~-~~~~~l~-~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~-~~~~~~~~~~--~~~~~--~~~~ 241 (432)
+.|.+|++ +++. ..+.... ++...+..++|+|++++|++++.+ +|.+||+. +++....... ..... .+.+
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp 92 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT 92 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC
Confidence 45777765 3441 2222221 244578899999999999999988 99999997 7776544332 12222 2335
Q ss_pred CCCE--EEEE--------------cCCeEEEEEccC-CceEe-ec----CCcCCEEEEEEcCC--EEEEEE-CCCcEEEE
Q 014003 242 EGPW--VFVG--------------MPNVVKAWHIES-SAEFS-LD----GPVGEVYSMVVANE--MLFAGA-QDGNILVW 296 (432)
Q Consensus 242 ~~~~--l~~~--------------~~~~i~vwd~~~-~~~~~-~~----~~~~~v~~l~~~~~--~l~~g~-~dg~i~~w 296 (432)
+++. ++++ .++.+.+|++.. ++... .. .+...+.+++++|+ +++++. .++.|.+|
T Consensus 93 dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~ 172 (365)
T 1jof_A 93 NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTH 172 (365)
T ss_dssp CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEE
Confidence 7773 3332 578999999974 54331 11 24567899999998 666665 46899999
Q ss_pred ECC-CCCCCccccceeee--ccccCeEEEEEe--CCEEEEEeC-CCeEEEEECC--CCceE---EEe---c----CCCC-
Q 014003 297 KGI-PNTQNPFQLAALLK--GHTRPVTCLAVG--GKRLYSGSM-DNTIRVWDLD--TLEAV---MTL---N----GHTD- 357 (432)
Q Consensus 297 d~~-~~~~~~~~~~~~~~--~h~~~v~~l~~~--~~~l~sgs~-dg~I~vwd~~--~~~~~---~~~---~----~~~~- 357 (432)
|+. +++. ..+..+. .|...+..++|+ |+++++++. ++.|.+|+++ +++.. ..+ . +|..
T Consensus 173 ~~~~~g~~---~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~ 249 (365)
T 1jof_A 173 RKLASGEV---ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPE 249 (365)
T ss_dssp EECTTSCE---EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTT
T ss_pred EECCCCCE---EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccc
Confidence 998 4431 2223333 235668889997 788888775 7899999765 56543 222 2 1222
Q ss_pred -----CcEEEE-Ec--CCEEEEEeCC-C-----cEEEEEcCCCCceeE----EeeccCCcceEEEeeeeCC---CCCcEE
Q 014003 358 -----APMSLL-CW--DQYLLSCSLD-N-----TIKVWIMTEEGNLEV----AYTHNEDHGVLALGGLNDP---DGNPVL 416 (432)
Q Consensus 358 -----~v~~~~-~~--~~~l~s~s~d-g-----~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~sp---~g~~~l 416 (432)
.+..+. ++ +++|++++.+ + .|.+|++.....+.. ...+......+++ +| +|+ +|
T Consensus 250 ~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~----sp~~~dg~-~l 324 (365)
T 1jof_A 250 TGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAV----SPCPWSDE-WM 324 (365)
T ss_dssp TSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCE----EECTTCTT-EE
T ss_pred cccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCccccee----cCCCcCCC-EE
Confidence 467777 76 6788776543 2 899999963333332 2123333444555 78 798 66
Q ss_pred EEEeC-CCeEEEeeCC
Q 014003 417 ICSCN-DDSVHLYELP 431 (432)
Q Consensus 417 ~sg~~-Dg~I~iwdl~ 431 (432)
++++. ++.|.+|++.
T Consensus 325 ~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 325 AITDDQEGWLEIYRWK 340 (365)
T ss_dssp EEECSSSCEEEEEEEE
T ss_pred EEEEcCCCeEEEEEEc
Confidence 66655 5999999864
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.66 E-value=2e-14 Score=137.34 Aligned_cols=248 Identities=11% Similarity=-0.022 Sum_probs=150.3
Q ss_pred EEEEeCCCCcEEEEEEecccCc-EEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCcee--------------
Q 014003 173 WHSWFCGEGFTMLAKLEGHKKA-VSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG-------------- 237 (432)
Q Consensus 173 i~vw~~~~~~~~~~~l~~H~~~-V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~-------------- 237 (432)
|.+|++.++ +... +..+... ...+.|+|+|++|+.++.++.|.+||+.+++............
T Consensus 62 l~~~d~~~~-~~~~-l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 139 (396)
T 3c5m_A 62 YYLLNLETQ-QAVQ-LTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKL 139 (396)
T ss_dssp EEEEETTTT-EEEE-CCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred EEEEECCCC-cEEE-eecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcc
Confidence 556666555 3332 3333333 3347899999999999999999999999988776666433211
Q ss_pred --------eEEECCCEEEE------EcCCeEEEEEccCCceEeecCCcCCEEEEEEcC-C--EEEEEECC------CcEE
Q 014003 238 --------SLICEGPWVFV------GMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN-E--MLFAGAQD------GNIL 294 (432)
Q Consensus 238 --------~~~~~~~~l~~------~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~-~--~l~~g~~d------g~i~ 294 (432)
...+++..++. ..+..|.+||+.+++......+...+..+.|+| + .++..+.+ ..|.
T Consensus 140 ~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~ 219 (396)
T 3c5m_A 140 VGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMW 219 (396)
T ss_dssp EEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCE
T ss_pred ccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEE
Confidence 01122222221 245589999999888766666677788999998 4 56655543 3688
Q ss_pred EEECCCCCCCccccceeeecc--ccCeEEEEEe--CCEEEEEeCC-----CeEEEEECCCCceEEEecCCCCCcEEEEE-
Q 014003 295 VWKGIPNTQNPFQLAALLKGH--TRPVTCLAVG--GKRLYSGSMD-----NTIRVWDLDTLEAVMTLNGHTDAPMSLLC- 364 (432)
Q Consensus 295 ~wd~~~~~~~~~~~~~~~~~h--~~~v~~l~~~--~~~l~sgs~d-----g~I~vwd~~~~~~~~~~~~~~~~v~~~~~- 364 (432)
+||+..+.. ..+..+ ...+..+.|+ +++|+.++.+ +.|++||+.+++........ ........
T Consensus 220 ~~d~~~~~~------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~s~~ 292 (396)
T 3c5m_A 220 LVNEDGSNV------RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-PCSHLMSNF 292 (396)
T ss_dssp EEETTSCCC------EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-SEEEEEECS
T ss_pred EEECCCCce------eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-CCCCCccCC
Confidence 888865532 122222 2346778886 7777666544 45999999988764432211 11123333
Q ss_pred cCCEEEEEe----------------CCCcEEEEEcCCCCceeEEeeccCCcce-------EEEeeeeCCCCCcEEEEEeC
Q 014003 365 WDQYLLSCS----------------LDNTIKVWIMTEEGNLEVAYTHNEDHGV-------LALGGLNDPDGNPVLICSCN 421 (432)
Q Consensus 365 ~~~~l~s~s----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~~~sp~g~~~l~sg~~ 421 (432)
+++++++++ .+..|.+||+.+++.. .+..+...... ......|+|+|+.+++++..
T Consensus 293 dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~ 371 (396)
T 3c5m_A 293 DGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF 371 (396)
T ss_dssp SSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred CCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecC
Confidence 567777654 3478999999876643 33333321000 01123348999966666666
Q ss_pred CCeEEEeeC
Q 014003 422 DDSVHLYEL 430 (432)
Q Consensus 422 Dg~I~iwdl 430 (432)
++...+|.+
T Consensus 372 ~~~~~l~~~ 380 (396)
T 3c5m_A 372 EGVPAIYIA 380 (396)
T ss_dssp TSSCEEEEE
T ss_pred CCCceEEEE
Confidence 676666643
No 165
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.63 E-value=4.9e-13 Score=124.96 Aligned_cols=267 Identities=11% Similarity=0.032 Sum_probs=176.7
Q ss_pred CCCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCC
Q 014003 90 KKSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDE 169 (432)
Q Consensus 90 ~~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 169 (432)
-+.|.+++++++|+.+++.+.++.+++++........... . ....
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~------------------------------~-----~~~~ 67 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRG------------------------------L-----GPIE 67 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGG------------------------------G-----CSCC
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccc------------------------------c-----cccc
Confidence 3567899999999999999888877776433221100000 0 0013
Q ss_pred CCeEEEEeCCCCcEEEEEEe-cccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-eeEEEeCCCceeeEEECCCEEE
Q 014003 170 CRFWHSWFCGEGFTMLAKLE-GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ-SASVINLGAEVGSLICEGPWVF 247 (432)
Q Consensus 170 d~~i~vw~~~~~~~~~~~l~-~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~l~ 247 (432)
++.|.+||..++ +.+..+. ++-.....++++++|+++++...++.|++||..... .+..+......
T Consensus 68 ~~~i~~~d~~~g-~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~----------- 135 (329)
T 3fvz_A 68 EDTILVIDPNNA-EILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP----------- 135 (329)
T ss_dssp SCCEEEECTTTC-CEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC-----------
T ss_pred CCcEEEEECCCC-eEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC-----------
Confidence 678999999877 3444443 455789999999999999998889999999986442 33333211000
Q ss_pred EEcCCeEEEEEccCCceEeecCCcCCEEEEEEcC-C--EEEEEE-CCCcEEEEECCCCCCCccccceeee----------
Q 014003 248 VGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVAN-E--MLFAGA-QDGNILVWKGIPNTQNPFQLAALLK---------- 313 (432)
Q Consensus 248 ~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~-~--~l~~g~-~dg~i~~wd~~~~~~~~~~~~~~~~---------- 313 (432)
-....+......+++++ + ++++.+ .++.|++||.. +. .+..+.
T Consensus 136 -----------------g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~-----~~~~~~~~g~~~~~~~ 192 (329)
T 3fvz_A 136 -----------------GSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GK-----FVTQWGEESSGSSPRP 192 (329)
T ss_dssp -----------------CCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SC-----EEEEECEECCSSSCCT
T ss_pred -----------------CCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CC-----EEEEeccCCCCCCCCC
Confidence 00023445678999997 4 555554 58999999943 32 233332
Q ss_pred ccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEec--CCCCCcEEEEEcCCEEEEE--------eCCCcEEE
Q 014003 314 GHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLN--GHTDAPMSLLCWDQYLLSC--------SLDNTIKV 380 (432)
Q Consensus 314 ~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~l~s~--------s~dg~i~i 380 (432)
++-.....++++ ++++++...++.|++||.++++.+..+. .+...+..+.+.+..++.. ..+..|++
T Consensus 193 ~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~ 272 (329)
T 3fvz_A 193 GQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFV 272 (329)
T ss_dssp TEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEE
T ss_pred cccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEE
Confidence 122347788886 4556666778999999999899998884 3455667776664333332 23458999
Q ss_pred EEcCCCCceeEEe---eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 381 WIMTEEGNLEVAY---THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 381 wd~~~~~~~~~~~---~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
||..+++.+..+. .+......+++ +|+|. ++++...++.|++|++.
T Consensus 273 ~~~~~g~~~~~~~~~~~~~~~p~~ia~----~~dG~-lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 273 MNFSSGEIIDVFKPVRKHFDMPHDIVA----SEDGT-VYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EETTTCCEEEEECCSSSCCSSEEEEEE----CTTSE-EEEEESSSCCEEEEEEE
T ss_pred EEcCCCeEEEEEcCCCCccCCeeEEEE----CCCCC-EEEEECCCCEEEEEeCC
Confidence 9999888776653 23333444555 89996 89999999999999863
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.63 E-value=2.5e-13 Score=128.70 Aligned_cols=251 Identities=11% Similarity=0.095 Sum_probs=168.5
Q ss_pred CCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeC----------CCcEEEEeCCCCceeEEEeCC-----
Q 014003 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR----------DGTVQLWDCHTGQSASVINLG----- 233 (432)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~----------Dg~v~iWd~~~~~~~~~~~~~----- 233 (432)
.|+.|.+||..++ +.+..+..+..+ .++|+|++++|+++.. +++|.+||..+.+.+..+...
T Consensus 29 ~d~~v~v~D~~t~-~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 29 TESRVHVYDYTNG-KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GGCEEEEEETTTC-CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred ccCeEEEEECCCC-eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence 4689999999887 567778777666 8999999999999863 678999999999998888743
Q ss_pred --Cce--eeEEECCCEEEEEc---CCeEEEEEccCCceEee-cCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCC
Q 014003 234 --AEV--GSLICEGPWVFVGM---PNVVKAWHIESSAEFSL-DGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNT 302 (432)
Q Consensus 234 --~~~--~~~~~~~~~l~~~~---~~~i~vwd~~~~~~~~~-~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~ 302 (432)
... ..+.+++++++++. ++.|.+||+.+++.... ....+ ...+.+.|+ .+++.+.||.+.+|+.....
T Consensus 106 ~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g 184 (361)
T 2oiz_A 106 GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDG 184 (361)
T ss_dssp BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence 112 24446899888763 57899999999887654 33322 222344443 78889999999999986532
Q ss_pred CCccccc---eeeeccccCeE-EEEEeCCEEEEEeCCCeEEEEECCCCce--EEEecCC------------CCCcEEEEE
Q 014003 303 QNPFQLA---ALLKGHTRPVT-CLAVGGKRLYSGSMDNTIRVWDLDTLEA--VMTLNGH------------TDAPMSLLC 364 (432)
Q Consensus 303 ~~~~~~~---~~~~~h~~~v~-~l~~~~~~l~sgs~dg~I~vwd~~~~~~--~~~~~~~------------~~~v~~~~~ 364 (432)
.. .... ..+..+..++. ....++..++..+.++.|.++|+...+. +..+... ......+..
T Consensus 185 ~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~ 263 (361)
T 2oiz_A 185 KV-ASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR 263 (361)
T ss_dssp SE-EEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred cE-eeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence 10 0000 11222222221 1123466777778899999999876542 2222110 011233333
Q ss_pred cCCEEEEEeC-----------CCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 365 WDQYLLSCSL-----------DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 365 ~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.++.++++.. .+.|.+||+.+.+.+..+..+. ...+++ +|||+ +|++++. +.|.+||+++
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~----spdg~-~l~v~n~-~~v~v~D~~t 334 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTI----DQQRN-LMLTLDG-GNVNVYDISQ 334 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEE----ETTTT-EEEEECS-SCEEEEECSS
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEE----CCCCC-EEEEeCC-CeEEEEECCC
Confidence 3566665543 3489999999998888777665 566666 89999 7777766 9999999875
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.60 E-value=2.7e-12 Score=117.08 Aligned_cols=229 Identities=12% Similarity=0.191 Sum_probs=157.0
Q ss_pred ecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC-------CceeeEEE---CCCEEEEEc--CCeEEE
Q 014003 189 EGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG-------AEVGSLIC---EGPWVFVGM--PNVVKA 256 (432)
Q Consensus 189 ~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~-------~~~~~~~~---~~~~l~~~~--~~~i~v 256 (432)
.+|-..+.+++++++++++++...++.|.+||.+ ++....+... .....+.. ++.++++.. ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3566789999999999999988899999999987 6666666431 12334433 455555653 789999
Q ss_pred EEccCCceEe-ec-CCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeee--ccccCeEEEEEe--CCE
Q 014003 257 WHIESSAEFS-LD-GPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLK--GHTRPVTCLAVG--GKR 328 (432)
Q Consensus 257 wd~~~~~~~~-~~-~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~--~h~~~v~~l~~~--~~~ 328 (432)
||. +++... .. .....+.+++++++ ++++...++.|.+||.... ....+. .+...+..++++ +++
T Consensus 105 ~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------~~~~~~~~~~~~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 105 YNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN------VLHKFGCSKHLEFPNGVVVNDKQEI 177 (286)
T ss_dssp ECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC------EEEEEECTTTCSSEEEEEECSSSEE
T ss_pred ECC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC------EEEEeCCCCccCCcEEEEECCCCCE
Confidence 994 444433 32 33457889999887 5555667889999996432 233332 344567889997 666
Q ss_pred EEEEeCCCeEEEEECCCCceEEEecCC--CCCcEEEEEc--CCEEEEEeCCC-cEEEEEcCCCCceeEEeeccCCcceEE
Q 014003 329 LYSGSMDNTIRVWDLDTLEAVMTLNGH--TDAPMSLLCW--DQYLLSCSLDN-TIKVWIMTEEGNLEVAYTHNEDHGVLA 403 (432)
Q Consensus 329 l~sgs~dg~I~vwd~~~~~~~~~~~~~--~~~v~~~~~~--~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~ 403 (432)
+++...++.|++||. +++.+..+..+ ...+..++++ ++++++...++ .|.+||. +++.+..+..+..... .
T Consensus 178 ~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~--~ 253 (286)
T 1q7f_A 178 FISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQ--C 253 (286)
T ss_dssp EEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSC--E
T ss_pred EEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCc--c
Confidence 666677899999997 46677777543 3567788887 67777777776 9999996 4455555544433211 1
Q ss_pred EeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 404 LGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 404 ~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
....++|+|+ ++++ +.|+.|++|++.
T Consensus 254 ~~i~~~~~g~-l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 254 FDVALMDDGS-VVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp EEEEEETTTE-EEEE-ETTTEEEEEECS
T ss_pred eeEEECCCCc-EEEE-CCCCeEEEEEcc
Confidence 2233479998 6666 579999999974
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.59 E-value=3.3e-13 Score=127.98 Aligned_cols=245 Identities=10% Similarity=0.059 Sum_probs=150.4
Q ss_pred CCCCCCCCCCceecCCCCCCCcccccccC-CCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCc--eeeCC
Q 014003 92 SPPSYNCPKNNVRVSSGSEEGTTHVQNRE-NPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGN--CVKGD 168 (432)
Q Consensus 92 ~v~~~~~s~~g~~las~~~Dg~i~iW~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~ 168 (432)
.+..++|+|||++|++++.+ ++.+|++. ++.... ....... + .+..+++.+.+.. +++++
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~----~~~~~~~----g--------~~~~~~~spdg~~l~~~~~~ 103 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH----EASHPIG----G--------HPRANDADTNTRAIFLLAAK 103 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE----EEEEECC----S--------SGGGGCTTSCCEEEEEEECS
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE----eeEeecC----C--------CCccEEECCCCCEEEEEEec
Confidence 45789999999999998877 99999875 322100 0000000 0 0122344444442 33443
Q ss_pred -------------CCCeEEEEeCCCCcEEEEEEe----cccCcEEEEEecCCCCEEEEEeC-CCcEEEEeCC-CCceeEE
Q 014003 169 -------------ECRFWHSWFCGEGFTMLAKLE----GHKKAVSGIALPLRSDKLYSGSR-DGTVQLWDCH-TGQSASV 229 (432)
Q Consensus 169 -------------~d~~i~vw~~~~~~~~~~~l~----~H~~~V~~l~~~~~~~~l~s~s~-Dg~v~iWd~~-~~~~~~~ 229 (432)
.++.+.+|+++...+....+. .+...+.+++|+|+|++|+++.. +++|.+||++ +++....
T Consensus 104 ~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~ 183 (365)
T 1jof_A 104 QPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV 183 (365)
T ss_dssp STTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred CCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEe
Confidence 688999999974223333333 35678999999999998887764 6899999998 6654321
Q ss_pred EeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEEC-CCcEEEEECCC--CCCC
Q 014003 230 INLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQ-DGNILVWKGIP--NTQN 304 (432)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~-dg~i~~wd~~~--~~~~ 304 (432)
.. .....+...+..++++|+ ++++++. ++.|.+|++.. ++..
T Consensus 184 ~~---------------------------------~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~ 230 (365)
T 1jof_A 184 GS---------------------------------VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV 230 (365)
T ss_dssp EE---------------------------------EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred ee---------------------------------EecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence 10 001112345788899988 6666664 78999998763 3210
Q ss_pred c-cccceeee----cccc------CeEEEE-Ee--CCEEEEEeCCC------eEEEEECC-CCceEE---EecCCCCCc-
Q 014003 305 P-FQLAALLK----GHTR------PVTCLA-VG--GKRLYSGSMDN------TIRVWDLD-TLEAVM---TLNGHTDAP- 359 (432)
Q Consensus 305 ~-~~~~~~~~----~h~~------~v~~l~-~~--~~~l~sgs~dg------~I~vwd~~-~~~~~~---~~~~~~~~v- 359 (432)
. .+.+..+. +|.. .+..++ |+ |++|+++..+. .|.+|++. +++... ....+...+
T Consensus 231 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~ 310 (365)
T 1jof_A 231 YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGH 310 (365)
T ss_dssp EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTT
T ss_pred EccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcc
Confidence 0 00111121 2222 477888 86 88887766432 89999996 666543 233333333
Q ss_pred -EEEEE---cCCEEEEEeCC-CcEEEEEcCCC
Q 014003 360 -MSLLC---WDQYLLSCSLD-NTIKVWIMTEE 386 (432)
Q Consensus 360 -~~~~~---~~~~l~s~s~d-g~i~iwd~~~~ 386 (432)
..+.. ++++|++++.+ +.|.+|+++..
T Consensus 311 ~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 311 SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 34445 57899988865 89999999765
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.59 E-value=1.1e-11 Score=115.70 Aligned_cols=226 Identities=12% Similarity=0.083 Sum_probs=146.5
Q ss_pred EEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEE-eCCCceeeEE--ECCCEEEEEcC-----CeEE
Q 014003 184 MLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI-NLGAEVGSLI--CEGPWVFVGMP-----NVVK 255 (432)
Q Consensus 184 ~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~~~~~--~~~~~l~~~~~-----~~i~ 255 (432)
....+..+...+.+++|++++++++++..++.|.+||.++++..... .....+..+. .++.++++... +.|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 34456667777899999999998888899999999999988876655 3344555555 46777776644 4899
Q ss_pred EEEccCCceEee---cCCcCCEEEEEEcCC-EEEEEEC-------CCcEEEEECCCCCCCccccceeeeccccCeEEEEE
Q 014003 256 AWHIESSAEFSL---DGPVGEVYSMVVANE-MLFAGAQ-------DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAV 324 (432)
Q Consensus 256 vwd~~~~~~~~~---~~~~~~v~~l~~~~~-~l~~g~~-------dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~ 324 (432)
+||.+++..... ......+.++.++++ .+++++. .+.|..+|..+++ ...+..+...+..+++
T Consensus 116 ~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~i~~ 189 (333)
T 2dg1_A 116 AATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT------VTPIIQNISVANGIAL 189 (333)
T ss_dssp EECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC------EEEEEEEESSEEEEEE
T ss_pred EEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE------EEEeecCCCcccceEE
Confidence 999988775422 123457889999988 4444444 2556666655432 1222223345678888
Q ss_pred e--CCEEEE-EeCCCeEEEEECCC-CceEEE--------ecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCcee
Q 014003 325 G--GKRLYS-GSMDNTIRVWDLDT-LEAVMT--------LNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLE 390 (432)
Q Consensus 325 ~--~~~l~s-gs~dg~I~vwd~~~-~~~~~~--------~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~ 390 (432)
+ ++.++. .+.++.|.+||+++ ++.+.. +.++ ..+..+.++ ++++++...++.|.+||. +++.+.
T Consensus 190 ~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~ 267 (333)
T 2dg1_A 190 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIG 267 (333)
T ss_dssp CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEE
T ss_pred CCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEE
Confidence 7 665554 45678999999964 333221 2222 345667776 677777777899999998 445444
Q ss_pred EEeeccC------CcceEEEeeeeCCCCCcEEEEEeC
Q 014003 391 VAYTHNE------DHGVLALGGLNDPDGNPVLICSCN 421 (432)
Q Consensus 391 ~~~~~~~------~~~~~~~~~~~sp~g~~~l~sg~~ 421 (432)
.+..... .+..+++ +|+++.+++++..
T Consensus 268 ~~~~~~~~~g~~~~~~~~~~----~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 268 QILIPGRDEGHMLRSTHPQF----IPGTNQLIICSND 300 (333)
T ss_dssp EEECTTGGGTCSCBCCEEEE----CTTSCEEEEEEEC
T ss_pred EEEcCCCccccccCcceEEE----CCCCCEEEEEeCc
Confidence 4443322 3445555 7898745555443
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.58 E-value=2.2e-13 Score=129.07 Aligned_cols=249 Identities=9% Similarity=0.014 Sum_probs=162.4
Q ss_pred ceEEeeccCceeeCC----------CCCeEEEEeCCCCcEEEEEEecc------cCcEEEEEecCCCCEEEEEeC--CCc
Q 014003 154 NVCYHWLSGNCVKGD----------ECRFWHSWFCGEGFTMLAKLEGH------KKAVSGIALPLRSDKLYSGSR--DGT 215 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~----------~d~~i~vw~~~~~~~~~~~l~~H------~~~V~~l~~~~~~~~l~s~s~--Dg~ 215 (432)
.+.+++....+..+. .++.|.+||..+. +.+.++..+ ......++|+|+|++|+++.. +++
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~-~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~ 132 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL-TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATS 132 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC-CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC-cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCe
Confidence 456666666555443 4678999999876 556666532 345678999999999998874 689
Q ss_pred EEEEeCCCCceeEE-EeCCCcee-eEEECC--CEEEEEcCCeEEEEEccC-CceEe-------ecCCcCCEE-EEEEcCC
Q 014003 216 VQLWDCHTGQSASV-INLGAEVG-SLICEG--PWVFVGMPNVVKAWHIES-SAEFS-------LDGPVGEVY-SMVVANE 282 (432)
Q Consensus 216 v~iWd~~~~~~~~~-~~~~~~~~-~~~~~~--~~l~~~~~~~i~vwd~~~-~~~~~-------~~~~~~~v~-~l~~~~~ 282 (432)
|.+||+.+++.+.. +....... .+.+++ .+++.+.++.+..++... ++... +.....++. .....+.
T Consensus 133 v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (361)
T 2oiz_A 133 IGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKD 212 (361)
T ss_dssp EEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSS
T ss_pred EEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCC
Confidence 99999999988877 65543321 122332 355667889998888865 44331 111111110 1122234
Q ss_pred EEEEEECCCcEEEEECCCCCCCccccceeeec------cc----cCeEEEEEe--CCEEEEEeC-----------CCeEE
Q 014003 283 MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG------HT----RPVTCLAVG--GKRLYSGSM-----------DNTIR 339 (432)
Q Consensus 283 ~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~------h~----~~v~~l~~~--~~~l~sgs~-----------dg~I~ 339 (432)
.++..+.++.|.++|+..... .....+.. +. ....-++++ ++.++++.. .+.|.
T Consensus 213 ~~~~~~~~~~v~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~ 289 (361)
T 2oiz_A 213 KAHFVSYYGNVYSADFSGDEV---KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIW 289 (361)
T ss_dssp EEEEEBTTSEEEEEECSSSSC---EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEE
T ss_pred EEEEEeCCCeEEEEEecCCCc---eecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEE
Confidence 566677889999999876542 11111110 00 111114555 677776543 35899
Q ss_pred EEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCC--CceeEEeeccCCcceEEEeeeeCCCCC
Q 014003 340 VWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEE--GNLEVAYTHNEDHGVLALGGLNDPDGN 413 (432)
Q Consensus 340 vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~sp~g~ 413 (432)
+||+++++.+.++..+. +..+.++ +++|++++. +.|.+||+.++ +.+..+.........+++ +|+|.
T Consensus 290 viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~----~p~G~ 360 (361)
T 2oiz_A 290 VMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQF----HPVGG 360 (361)
T ss_dssp EEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEE----CCCSC
T ss_pred EEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEe----cCCCC
Confidence 99999999999998877 7888887 788888887 99999999998 777665444444455555 78885
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.57 E-value=8.5e-14 Score=142.68 Aligned_cols=287 Identities=10% Similarity=-0.021 Sum_probs=178.5
Q ss_pred CCCCCCCCCCCCCCCCCceecCCC--CCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEe--ec
Q 014003 85 PVSNHKKSPPSYNCPKNNVRVSSG--SEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYH--WL 160 (432)
Q Consensus 85 ~~~gh~~~v~~~~~s~~g~~las~--~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 160 (432)
.+.+|...+.+++|++++.+++++ +.|+...||.....+.. ..+..... .......+.......+. +.
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~l~~~~~--~~~~~~~~~~~~~~~~~~SPD 89 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAE------ESALPAPW--NVRNRVFEYSGFPWAGVPRPA 89 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCE------EESSCTTC--CBCCCGGGTCCCCEEEECCSS
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCc------ceeCCCCc--cccccccccCCccceeeeecC
Confidence 467899999999999999999988 77999999975322210 00000000 00000011111122222 44
Q ss_pred cCc-eeeC-CCCCeEEEEeCC--C-CcEEEEEEec-----ccCcEEEEEecCCCCEEEEEeCC----------CcEEEEe
Q 014003 161 SGN-CVKG-DECRFWHSWFCG--E-GFTMLAKLEG-----HKKAVSGIALPLRSDKLYSGSRD----------GTVQLWD 220 (432)
Q Consensus 161 ~~~-~~~g-~~d~~i~vw~~~--~-~~~~~~~l~~-----H~~~V~~l~~~~~~~~l~s~s~D----------g~v~iWd 220 (432)
+.. ++.. ..+..|.++++. . + . ...+.. |...+.+++|+|||+.|++++.| .+|.+||
T Consensus 90 g~~~la~~~~~~~~l~~~~~~~~g~~-~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~ 167 (662)
T 3azo_A 90 GGPLLVFTHFGDQRLYAFEPDAPGGA-V-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVP 167 (662)
T ss_dssp SSCEEEEEBTTTCCEEEECTTSTTCC-C-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred CCeEEEEEECCCCeEEEEcCCCCCCC-C-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence 555 5443 335677777776 2 3 2 344555 77889999999999999999887 5899999
Q ss_pred CCC------CceeEEE-eCCCcee--eEEECCCEEEE-EcC--------CeEEEEEcc-CC---ceEeec-CCcCCEEEE
Q 014003 221 CHT------GQSASVI-NLGAEVG--SLICEGPWVFV-GMP--------NVVKAWHIE-SS---AEFSLD-GPVGEVYSM 277 (432)
Q Consensus 221 ~~~------~~~~~~~-~~~~~~~--~~~~~~~~l~~-~~~--------~~i~vwd~~-~~---~~~~~~-~~~~~v~~l 277 (432)
+.+ ++..... .....+. .+.++++.|+. +.+ ..|.+||+. ++ +...+. .+...+..+
T Consensus 168 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~ 247 (662)
T 3azo_A 168 LDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQA 247 (662)
T ss_dssp TTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEE
T ss_pred CCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcce
Confidence 988 5544333 2223232 34468887764 433 379999999 56 333333 346789999
Q ss_pred EEcCC--EEEEEECCC--cEEEEECCCCCCCccccceeeeccccC--------eEEEEEe--CCEEEEEeCCCeEEEE--
Q 014003 278 VVANE--MLFAGAQDG--NILVWKGIPNTQNPFQLAALLKGHTRP--------VTCLAVG--GKRLYSGSMDNTIRVW-- 341 (432)
Q Consensus 278 ~~~~~--~l~~g~~dg--~i~~wd~~~~~~~~~~~~~~~~~h~~~--------v~~l~~~--~~~l~sgs~dg~I~vw-- 341 (432)
.|+++ +++++..++ .|.+||+.+++. ......+... +..++++ +.++++++. +.++||
T Consensus 248 ~~spdg~l~~~~~~~~~~~l~~~~~~~~~~-----~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 248 EWAPDGSLIVATDRTGWWNLHRVDPATGAA-----TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECTTTCCE-----EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred EECCCCeEEEEECCCCCeEEEEEECCCCce-----eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 99988 777777888 566666644431 1111222211 4567775 788888888 999999
Q ss_pred ECCCCceEEEecCCCCCcEEE-EEcCCE-EE-EEeCCC--cEEEEEcCCCCc
Q 014003 342 DLDTLEAVMTLNGHTDAPMSL-LCWDQY-LL-SCSLDN--TIKVWIMTEEGN 388 (432)
Q Consensus 342 d~~~~~~~~~~~~~~~~v~~~-~~~~~~-l~-s~s~dg--~i~iwd~~~~~~ 388 (432)
|+.+++ +..+..|...+..+ +++++. ++ +++.+. .|.++|+.+++.
T Consensus 322 d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 322 DPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp ETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred ECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 666555 67888887778777 777543 33 334444 455556656543
No 172
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.52 E-value=8.5e-12 Score=113.42 Aligned_cols=209 Identities=11% Similarity=0.049 Sum_probs=142.3
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEeccc-CcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHK-KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI 240 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~-~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~ 240 (432)
..+++++.++.|.+||.+++ +.+.++..+. ..+.++++.|+|++|+ +.++.|..||. +++.+..+...
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG-~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~------- 74 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTK-EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP------- 74 (276)
T ss_dssp EEEEECTTCSEEEEEETTTT-EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC-------
T ss_pred cEEEeeCCCCEEEEEECCCC-eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC-------
Confidence 46889999999999999888 7788888776 5789999999999988 45788999999 78877665431
Q ss_pred ECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEEC-CCcEEEEECCCCCCCccccceeee----
Q 014003 241 CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQ-DGNILVWKGIPNTQNPFQLAALLK---- 313 (432)
Q Consensus 241 ~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~-dg~i~~wd~~~~~~~~~~~~~~~~---- 313 (432)
....+.++.+.++ .+++.+. ++.|..+|. +++ .+..+.
T Consensus 75 -----------------------------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk-----~l~~~~~~~~ 119 (276)
T 3no2_A 75 -----------------------------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGE-----VLSKTEFETG 119 (276)
T ss_dssp -----------------------------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSC-----EEEEEEECCS
T ss_pred -----------------------------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCC-----EEEEEeccCC
Confidence 1123455555555 5555555 566666664 222 122211
Q ss_pred --ccccCeEEEEE--eCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCC
Q 014003 314 --GHTRPVTCLAV--GGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEG 387 (432)
Q Consensus 314 --~h~~~v~~l~~--~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~ 387 (432)
.+......+++ +|+++++...++.|.+||.+ |+.+.++..... +.++... ++.+++++.++.|..+|..+++
T Consensus 120 ~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~-~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 120 IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGT-PFSSAFLDNGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSC-CCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCC-ccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence 11122223334 49999999999999999998 999999976533 3344444 7888888888899999999898
Q ss_pred ceeEEeeccCC--cceEEEeeeeCCCCCcEEEEE
Q 014003 388 NLEVAYTHNED--HGVLALGGLNDPDGNPVLICS 419 (432)
Q Consensus 388 ~~~~~~~~~~~--~~~~~~~~~~sp~g~~~l~sg 419 (432)
.+..+...... ...........++|. ++++.
T Consensus 198 ~~w~~~~~~~~~~~l~~~~~~~~~~~G~-i~v~~ 230 (276)
T 3no2_A 198 IVRRVNANDIEGVQLFFVAQLFPLQNGG-LYICN 230 (276)
T ss_dssp EEEEEEGGGSBSCCCSEEEEEEECTTSC-EEEEE
T ss_pred EEEEecCCCCCCccccccccceEcCCCC-EEEEe
Confidence 88777643211 111112223368888 56655
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.52 E-value=9.7e-11 Score=116.95 Aligned_cols=260 Identities=13% Similarity=0.094 Sum_probs=177.9
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCC--CCceeEEEeCCCceeeE
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCH--TGQSASVINLGAEVGSL 239 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~--~~~~~~~~~~~~~~~~~ 239 (432)
..+++...++.|.++|..++ +.+.++.. ...+..++|+|||+++++++.|+.|.+||+. +++.+..+..+.....+
T Consensus 168 ~~~V~~~~~~~V~viD~~t~-~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~i 245 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTY-EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 245 (567)
T ss_dssp EEEEEETTTTEEEEEETTTC-CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred eEEEEeCCCCeEEEEECCCC-eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCcee
Confidence 35677888999999999887 66766654 3457799999999999999999999999996 88888888876655444
Q ss_pred E------ECCCEEEEE--cCCeEEEEEccCCceEeecC-----------C-cCCEEEEEEcCC---EEEEEECCCcEEEE
Q 014003 240 I------CEGPWVFVG--MPNVVKAWHIESSAEFSLDG-----------P-VGEVYSMVVANE---MLFAGAQDGNILVW 296 (432)
Q Consensus 240 ~------~~~~~l~~~--~~~~i~vwd~~~~~~~~~~~-----------~-~~~v~~l~~~~~---~l~~g~~dg~i~~w 296 (432)
. +++++++++ .++.+.++|..+.+.+.... + ...+..+..+++ .++....+|.|.++
T Consensus 246 a~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v 325 (567)
T 1qks_A 246 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 325 (567)
T ss_dssp EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred EEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE
Confidence 3 268887765 67999999998887653211 1 225777777765 56666778999999
Q ss_pred ECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEe-CCCeEEEEECCCCceEEEecC-----CCCCcEEEE-Ec-C
Q 014003 297 KGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGS-MDNTIRVWDLDTLEAVMTLNG-----HTDAPMSLL-CW-D 366 (432)
Q Consensus 297 d~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs-~dg~I~vwd~~~~~~~~~~~~-----~~~~v~~~~-~~-~ 366 (432)
|...... ..+..+. .......+.|+ +++++++. .++.|.++|+.+++.+..+.. |.+.-..+. .. +
T Consensus 326 d~~~~~~---~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g 401 (567)
T 1qks_A 326 DYTDLNN---LKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG 401 (567)
T ss_dssp ETTCSSE---EEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE
T ss_pred ecCCCcc---ceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCC
Confidence 9876532 1122222 23345567776 78877665 578999999999998877754 332222221 12 2
Q ss_pred CEEEEEe-CCCcEEEEEcCC-------CCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeC-------CCeEEEeeCC
Q 014003 367 QYLLSCS-LDNTIKVWIMTE-------EGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCN-------DDSVHLYELP 431 (432)
Q Consensus 367 ~~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~-------Dg~I~iwdl~ 431 (432)
...+++. .++.|.++|..+ .+.+..+.........+.. +|+++ .+.+... .+.|.++|+.
T Consensus 402 ~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~----~p~~~-~l~v~~~~~~~~~~~~~v~v~d~~ 476 (567)
T 1qks_A 402 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKT----HPNSQ-YLYVDATLNPEAEISGSVAVFDIK 476 (567)
T ss_dssp EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC----CTTCS-EEEEECTTCSSHHHHTCEEEEEGG
T ss_pred cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEe----CCCCC-eEEEecCCCCCcccCceEEEEECC
Confidence 3444443 468999999987 3445555443222122333 89999 5554442 4589999975
Q ss_pred C
Q 014003 432 S 432 (432)
Q Consensus 432 s 432 (432)
+
T Consensus 477 ~ 477 (567)
T 1qks_A 477 A 477 (567)
T ss_dssp G
T ss_pred c
Confidence 3
No 174
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.51 E-value=1.1e-11 Score=117.80 Aligned_cols=253 Identities=16% Similarity=0.106 Sum_probs=172.1
Q ss_pred ccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCcee--
Q 014003 160 LSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVG-- 237 (432)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~-- 237 (432)
..+.+..++.++.|..+|..++ +.+............... .+..++.++.++.|..+|..+++.+..........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG-~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDG-TVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTC-CEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCC-CEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee
Confidence 4556777888899999999888 445455443222111122 24578889999999999999999988887654432
Q ss_pred -----eEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCC-----------E-EEEEEcCCEEEEEECCCcEEEEECCC
Q 014003 238 -----SLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGE-----------V-YSMVVANEMLFAGAQDGNILVWKGIP 300 (432)
Q Consensus 238 -----~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~-----------v-~~l~~~~~~l~~g~~dg~i~~wd~~~ 300 (432)
.+..++.++++..++.+..+|.++++.......... + .......+.+++++.++.+..+|..+
T Consensus 179 ~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t 258 (376)
T 3q7m_A 179 RGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS 258 (376)
T ss_dssp CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT
T ss_pred cCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC
Confidence 222355555555788999999998886532211100 1 12223455888889999999999988
Q ss_pred CCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecC-CCCCcEEEEEcCCEEEEEeCCCcEE
Q 014003 301 NTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNG-HTDAPMSLLCWDQYLLSCSLDNTIK 379 (432)
Q Consensus 301 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~s~dg~i~ 379 (432)
++. ..... ......+..++..++.++.++.|..+|.++++.+..... ...........+..|+.++.+|.+.
T Consensus 259 G~~-----~w~~~--~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~ 331 (376)
T 3q7m_A 259 GQI-----MWKRE--LGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLH 331 (376)
T ss_dssp CCE-----EEEEC--CCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEE
T ss_pred CcE-----Eeecc--CCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEE
Confidence 753 22222 234556677788999999999999999999999888763 2233444455688999999999999
Q ss_pred EEEcCCCCceeEEeeccCCcc-eEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 380 VWIMTEEGNLEVAYTHNEDHG-VLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 380 iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
++|..+++.+.........+. .... .++ .|+.++.+|.|..|+
T Consensus 332 ~~d~~tG~~~~~~~~~~~~~~~~~~~-----~~~--~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 332 WINVEDGRFVAQQKVDSSGFQTEPVA-----ADG--KLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEETTTCCEEEEEECCTTCBCSCCEE-----ETT--EEEEEBTTSCEEEEE
T ss_pred EEECCCCcEEEEEecCCCcceeCCEE-----ECC--EEEEEeCCCEEEEEe
Confidence 999999887766654333222 1222 233 577788999999987
No 175
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.51 E-value=1.5e-11 Score=114.84 Aligned_cols=250 Identities=9% Similarity=-0.044 Sum_probs=166.1
Q ss_pred CCCCeEEEEeCCCCcEEEEEEe------cccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE-
Q 014003 168 DECRFWHSWFCGEGFTMLAKLE------GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI- 240 (432)
Q Consensus 168 ~~d~~i~vw~~~~~~~~~~~l~------~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~- 240 (432)
..++.|.++|.+++ +....+. ........+++. ++++.++...+++|.+||..+++.+..+........+.
T Consensus 14 ~~~~~l~~~d~~t~-~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~ 91 (328)
T 3dsm_A 14 YSNATLSYYDPATC-EVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHF 91 (328)
T ss_dssp SCCBEEEEEETTTT-EEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEE
T ss_pred CCCceEEEEECCCC-EEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEE
Confidence 45789999999887 4443331 122456778874 45556666668999999999999998887555555444
Q ss_pred -ECCCEEEEE-cCCeEEEEEccCCceEeecCCcC------CEEEEEEcCCEEEEEE--CCCcEEEEECCCCCCCccccce
Q 014003 241 -CEGPWVFVG-MPNVVKAWHIESSAEFSLDGPVG------EVYSMVVANEMLFAGA--QDGNILVWKGIPNTQNPFQLAA 310 (432)
Q Consensus 241 -~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~------~v~~l~~~~~~l~~g~--~dg~i~~wd~~~~~~~~~~~~~ 310 (432)
.++.+.++. .++.|.+||+.+++......... ....+++..+.++++. .++.|.++|..+++ ...
T Consensus 92 ~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~-----~~~ 166 (328)
T 3dsm_A 92 LSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDK-----VVD 166 (328)
T ss_dssp EETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTE-----EEE
T ss_pred eCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCe-----EEE
Confidence 466444444 58999999999987653221111 4455666666666665 48999999998864 233
Q ss_pred eeeccccCeEEEEEe--CCEEEEEeCC----------CeEEEEECCCCceEEEecCC-CCCcEEEEEc--CCEEEEEeCC
Q 014003 311 LLKGHTRPVTCLAVG--GKRLYSGSMD----------NTIRVWDLDTLEAVMTLNGH-TDAPMSLLCW--DQYLLSCSLD 375 (432)
Q Consensus 311 ~~~~h~~~v~~l~~~--~~~l~sgs~d----------g~I~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~s~d 375 (432)
.+... .....+.++ |++++++..+ +.|.++|.++++....+... ......++++ +++|+++..
T Consensus 167 ~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~- 244 (328)
T 3dsm_A 167 ELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN- 244 (328)
T ss_dssp EEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-
T ss_pred EEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-
Confidence 34322 233566776 6655555444 78999999999988777533 2357888888 677777655
Q ss_pred CcEEEEEcCCCCceeEEe-ec-cCCcceEEEeeeeCCCCCcEEEEE----eCCCeEEEeeCC
Q 014003 376 NTIKVWIMTEEGNLEVAY-TH-NEDHGVLALGGLNDPDGNPVLICS----CNDDSVHLYELP 431 (432)
Q Consensus 376 g~i~iwd~~~~~~~~~~~-~~-~~~~~~~~~~~~~sp~g~~~l~sg----~~Dg~I~iwdl~ 431 (432)
.|.+||..+++...... .. ......+++ +|++..++++. ..++.|.+||..
T Consensus 245 -~v~~~d~~t~~~~~~~~~~~~~~~p~gi~v----dp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 245 -DIWRMPVEADRVPVRPFLEFRDTKYYGLTV----NPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp -SEEEEETTCSSCCSSCSBCCCSSCEEEEEE----CTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred -EEEEEECCCCceeeeeeecCCCCceEEEEE----cCCCCeEEEEcccccccCCEEEEECCC
Confidence 89999998776532111 11 122334444 88555477777 678999999864
No 176
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.51 E-value=2.6e-12 Score=133.52 Aligned_cols=231 Identities=9% Similarity=0.080 Sum_probs=153.1
Q ss_pred cEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCc------e--eeEEECCCEEEEEcC----------CeEE
Q 014003 194 AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE------V--GSLICEGPWVFVGMP----------NVVK 255 (432)
Q Consensus 194 ~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~------~--~~~~~~~~~l~~~~~----------~~i~ 255 (432)
...+++|+|++++++++ |++|++||+.++++...+..... . ..+.++++.++.+.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 45578999999999986 99999999999998777664431 1 244678988776644 6788
Q ss_pred EEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCe--------------
Q 014003 256 AWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV-------------- 319 (432)
Q Consensus 256 vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v-------------- 319 (432)
+||+.+++...+..+...+...+|+|+ .|+.+ .++.|++||+.++... ++ +..++...+
T Consensus 96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~--~l--t~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSY--RI--TWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCE--EC--CSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceE--EE--cCCCCccceecCcccccccchhc
Confidence 999999998888888889999999999 66666 5789999999876531 11 112222212
Q ss_pred ---EEEEEe--CCEEEEEeCCC------------------------------------eEEEEECCC---Cc--eEEEec
Q 014003 320 ---TCLAVG--GKRLYSGSMDN------------------------------------TIRVWDLDT---LE--AVMTLN 353 (432)
Q Consensus 320 ---~~l~~~--~~~l~sgs~dg------------------------------------~I~vwd~~~---~~--~~~~~~ 353 (432)
..+.|+ |+.|+.++.|. .|++||+.+ ++ ....+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 236676 88888775321 588999998 73 233343
Q ss_pred ------CCCCCcEEEEEc--CCEEEEEeC----CCcEEEEEcCCCC----c--eeEE--eeccCCcce-EEEeeeeCCCC
Q 014003 354 ------GHTDAPMSLLCW--DQYLLSCSL----DNTIKVWIMTEEG----N--LEVA--YTHNEDHGV-LALGGLNDPDG 412 (432)
Q Consensus 354 ------~~~~~v~~~~~~--~~~l~s~s~----dg~i~iwd~~~~~----~--~~~~--~~~~~~~~~-~~~~~~~sp~g 412 (432)
+|...+..++|+ ++.++.... +..|.+||+.+++ + +..+ ..+..-+.. ......|+|||
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence 367778888887 565554432 3479999998876 1 2222 223322220 00123459999
Q ss_pred CcEEEEEe-CCC--eEEEeeCC
Q 014003 413 NPVLICSC-NDD--SVHLYELP 431 (432)
Q Consensus 413 ~~~l~sg~-~Dg--~I~iwdl~ 431 (432)
+.+++..+ .+| .|++||+.
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~ 352 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQID 352 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETT
T ss_pred CEEEEEEEcCCCceEEEEEECC
Confidence 95552444 454 46677754
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.48 E-value=1.8e-11 Score=114.76 Aligned_cols=234 Identities=8% Similarity=-0.007 Sum_probs=152.8
Q ss_pred CCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCC---C--cEEEEeCCCCceeEEEeCCCceeeEE--EC
Q 014003 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD---G--TVQLWDCHTGQSASVINLGAEVGSLI--CE 242 (432)
Q Consensus 170 d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~D---g--~v~iWd~~~~~~~~~~~~~~~~~~~~--~~ 242 (432)
++.|.+|++.++.. ..+ ..+..++|+|||++|+.++.+ + .|.+||+.+++......... +..+. ++
T Consensus 42 ~~~l~~~d~~~~~~--~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspd 114 (347)
T 2gop_A 42 ENTIVIENLKNNAR--RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNED 114 (347)
T ss_dssp EEEEEEEETTTCCE--EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTT
T ss_pred cceEEEEeCCCCce--EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCC
Confidence 56799999987632 223 568899999999999988754 2 48888998887766665544 44444 47
Q ss_pred CCEEEEEc----------------------------CCeEEEEEccCCce-EeecCCcCCEEEEEEcCC-EEEEEECCC-
Q 014003 243 GPWVFVGM----------------------------PNVVKAWHIESSAE-FSLDGPVGEVYSMVVANE-MLFAGAQDG- 291 (432)
Q Consensus 243 ~~~l~~~~----------------------------~~~i~vwd~~~~~~-~~~~~~~~~v~~l~~~~~-~l~~g~~dg- 291 (432)
++.++... ...|.+||+.+++. ..+.. . .+..+.|+|+ +++++..++
T Consensus 115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~ 192 (347)
T 2gop_A 115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREI 192 (347)
T ss_dssp SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCS
T ss_pred CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccc
Confidence 77666542 25788999988876 44433 3 7788899988 666665542
Q ss_pred ------cEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCC--------CeEEEEECCCCceEEEecCCCC
Q 014003 292 ------NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD--------NTIRVWDLDTLEAVMTLNGHTD 357 (432)
Q Consensus 292 ------~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~d--------g~I~vwd~~~~~~~~~~~~~~~ 357 (432)
...+|.+.+++ ...+..+ ..+..+..+|+.|+.++.+ ..|.+|| +++.......+..
T Consensus 193 ~~~~~~~~~l~~~d~~~------~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~ 263 (347)
T 2gop_A 193 IPQYFKFWDIYIWEDGK------EEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR 263 (347)
T ss_dssp SCCSSCCEEEEEEETTE------EEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS
T ss_pred cccccccccEEEeCCCc------eEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc
Confidence 33444443322 2223333 5566665568888777644 4788888 6666555556666
Q ss_pred CcEE-EEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeE-EEeeC
Q 014003 358 APMS-LLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSV-HLYEL 430 (432)
Q Consensus 358 ~v~~-~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I-~iwdl 430 (432)
.+.. +.+++.++++++.++.+++| +.++ ....+..+...+..+++ +| . ++++++.++.. ++|.+
T Consensus 264 ~~~~~~~~sdg~~~~~~~~~~~~l~-~~~g-~~~~~~~~~~~v~~~~~----s~--~-~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 264 GVGQAKIKDGKVYFTLFEEGSVNLY-IWDG-EIKPIAKGRHWIMGFDV----DE--I-VVYLKETATRLRELFTW 329 (347)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEEE-EESS-SEEEEECSSSEEEEEEE----SS--S-EEEEEECSSSCCEEEEE
T ss_pred ccCCccEEcCcEEEEEecCCcEEEE-EcCC-ceEEEecCCCeEEeeee----eC--c-EEEEEcCCCChHHheEe
Confidence 6775 66763388888999999999 8843 34444444443444444 77 4 77777777664 77754
No 178
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.48 E-value=6.5e-11 Score=107.87 Aligned_cols=223 Identities=10% Similarity=0.096 Sum_probs=152.5
Q ss_pred ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEe------cccCcEEEEEe-cCCCCEEEEEeC-CCcEEEEeCCCCc
Q 014003 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLE------GHKKAVSGIAL-PLRSDKLYSGSR-DGTVQLWDCHTGQ 225 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~------~H~~~V~~l~~-~~~~~~l~s~s~-Dg~v~iWd~~~~~ 225 (432)
.+++.+....+++...++.|.+|+.+.. .+..+. +|...+.++++ .++++++++... ++.|.+|| .+++
T Consensus 34 ~v~~~~~g~l~v~~~~~~~i~~~d~~g~--~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~ 110 (286)
T 1q7f_A 34 GVAVNAQNDIIVADTNNHRIQIFDKEGR--FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQ 110 (286)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECTTSC--EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSC
T ss_pred eEEECCCCCEEEEECCCCEEEEECCCCc--EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCc
Confidence 4455555556677778899999998743 344443 35567899999 577776666643 89999999 5677
Q ss_pred eeEEEeCC--CceeeEE--ECCCEEEEE-cCCeEEEEEccCCceEeec--CCcCCEEEEEEcCC--EEEEEECCCcEEEE
Q 014003 226 SASVINLG--AEVGSLI--CEGPWVFVG-MPNVVKAWHIESSAEFSLD--GPVGEVYSMVVANE--MLFAGAQDGNILVW 296 (432)
Q Consensus 226 ~~~~~~~~--~~~~~~~--~~~~~l~~~-~~~~i~vwd~~~~~~~~~~--~~~~~v~~l~~~~~--~l~~g~~dg~i~~w 296 (432)
.+..+... .....+. +++.++++. .++.|.+|+.......... .+...+.+++++++ ++++...++.|++|
T Consensus 111 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 190 (286)
T 1q7f_A 111 FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVF 190 (286)
T ss_dssp EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEE
T ss_pred EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEE
Confidence 77766532 2344444 467776665 5689999997654333332 34557899999987 55555678999999
Q ss_pred ECCCCCCCccccceeeec--cccCeEEEEEe--CCEEEEEeCCC-eEEEEECCCCceEEEecCCCC--CcEEEEEc--CC
Q 014003 297 KGIPNTQNPFQLAALLKG--HTRPVTCLAVG--GKRLYSGSMDN-TIRVWDLDTLEAVMTLNGHTD--APMSLLCW--DQ 367 (432)
Q Consensus 297 d~~~~~~~~~~~~~~~~~--h~~~v~~l~~~--~~~l~sgs~dg-~I~vwd~~~~~~~~~~~~~~~--~v~~~~~~--~~ 367 (432)
|.... .+..+.. +...+..++++ ++++++...++ .|.+||. +++.+..+..+.. .+.+++++ ++
T Consensus 191 ~~~g~------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~ 263 (286)
T 1q7f_A 191 NYEGQ------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGS 263 (286)
T ss_dssp ETTCC------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTE
T ss_pred cCCCC------EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCc
Confidence 97442 2333332 23567889997 77777777775 9999995 5677777765443 35677776 55
Q ss_pred EEEEEeCCCcEEEEEcCCCC
Q 014003 368 YLLSCSLDNTIKVWIMTEEG 387 (432)
Q Consensus 368 ~l~s~s~dg~i~iwd~~~~~ 387 (432)
++++ +.|+.|++|++....
T Consensus 264 l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 264 VVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEEE-ETTTEEEEEECSCCC
T ss_pred EEEE-CCCCeEEEEEccccc
Confidence 5555 689999999986643
No 179
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.47 E-value=1.2e-12 Score=134.98 Aligned_cols=241 Identities=10% Similarity=-0.042 Sum_probs=158.8
Q ss_pred CCCCCCCCCCCCCCCceecC-----CCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeecc
Q 014003 87 SNHKKSPPSYNCPKNNVRVS-----SGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~la-----s~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (432)
++|...+.+++|||||++|| +|+.+.+|++||+.++....+. .+ ... ....+++.+.+
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~--~~--~~~-------------~~~~~~wspDg 179 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD--VI--EGG-------------KYATPKWTPDS 179 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC--CB--SCC-------------TTCCCEECTTS
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc--cc--Ccc-------------cccceEEecCC
Confidence 56777788999999999999 8998999999998876642010 00 000 01245566666
Q ss_pred CceeeCCCCCe-------------EEEEeCCCCc---EEEEEEecccCcEEEEEecCCCCEEEEEeCCC----cEEEEeC
Q 014003 162 GNCVKGDECRF-------------WHSWFCGEGF---TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDG----TVQLWDC 221 (432)
Q Consensus 162 ~~~~~g~~d~~-------------i~vw~~~~~~---~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg----~v~iWd~ 221 (432)
..++.++.|.. |++|++.++. .++.....|...+.+++|+|||++|+.++.++ .|.+||.
T Consensus 180 ~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~ 259 (695)
T 2bkl_A 180 KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRP 259 (695)
T ss_dssp SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECT
T ss_pred CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcC
Confidence 67777666554 9999998763 34444556777899999999999999888776 7788877
Q ss_pred CCCceeEEEeCCCcee-eEEECCCEEEEEc----CCeEEEEEccCCce---EeecC-C-cCCEEEEEEcCC-EEEEEECC
Q 014003 222 HTGQSASVINLGAEVG-SLICEGPWVFVGM----PNVVKAWHIESSAE---FSLDG-P-VGEVYSMVVANE-MLFAGAQD 290 (432)
Q Consensus 222 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~----~~~i~vwd~~~~~~---~~~~~-~-~~~v~~l~~~~~-~l~~g~~d 290 (432)
.+++............ .+.+++.+++.+. ++.|.+||+.++.. ..+.. + ...+..+.+..+ ++++...|
T Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~d 339 (695)
T 2bkl_A 260 GEKDFRLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKD 339 (695)
T ss_dssp TCSSCEEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEET
T ss_pred CCCceEEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEEC
Confidence 6666555444433332 3335666444443 47899999987652 23332 2 456778888866 77888889
Q ss_pred CcEEEEECCCCCCCccccceeeecc-ccCeEEEEEe--CCEEE-EEe---CCCeEEEEECCCCce
Q 014003 291 GNILVWKGIPNTQNPFQLAALLKGH-TRPVTCLAVG--GKRLY-SGS---MDNTIRVWDLDTLEA 348 (432)
Q Consensus 291 g~i~~wd~~~~~~~~~~~~~~~~~h-~~~v~~l~~~--~~~l~-sgs---~dg~I~vwd~~~~~~ 348 (432)
+..++|.+.... .....+..+ ...+..++++ ++.++ +.+ ..++|++||+.+++.
T Consensus 340 g~~~l~~~~~~g----~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 340 ATSEVRVATLKG----KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp TEEEEEEEETTC----CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CEEEEEEEeCCC----CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 988888665221 122333333 4445556554 55555 322 347899999998874
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.46 E-value=2e-10 Score=114.66 Aligned_cols=309 Identities=8% Similarity=-0.003 Sum_probs=196.6
Q ss_pred CCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCCCCeEEEEeC
Q 014003 99 PKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFC 178 (432)
Q Consensus 99 s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw~~ 178 (432)
.+++.++++...|+++.++|..+..... . +-....+..+.+.+.+..+..++.|+.|.+||+
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~----~--------------i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~ 225 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKT----V--------------LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDL 225 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEE----E--------------EECSSCEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEE----E--------------EeCCCCccceEECCCCCEEEEEcCCCeEEEEEC
Confidence 4677888888999999999866543210 0 000011124566777777777788999999999
Q ss_pred C--CCcEEEEEEecccCcEEEEEec----CCCCEEEEEeC-CCcEEEEeCCCCceeEEEeCCC------------ceeeE
Q 014003 179 G--EGFTMLAKLEGHKKAVSGIALP----LRSDKLYSGSR-DGTVQLWDCHTGQSASVINLGA------------EVGSL 239 (432)
Q Consensus 179 ~--~~~~~~~~l~~H~~~V~~l~~~----~~~~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~~------------~~~~~ 239 (432)
. +. +.+.++.... ....++|+ |+|++++++.. +++|.++|..+.+.+..+.... .+..+
T Consensus 226 ~~~t~-~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i 303 (567)
T 1qks_A 226 WMKEP-TTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI 303 (567)
T ss_dssp TSSSC-CEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred CCCCC-cEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEE
Confidence 5 54 6667776543 46789999 69999887766 5999999999999998877532 22333
Q ss_pred E--ECCCEEEEE--cCCeEEEEEccCCceE--eecCCcCCEEEEEEcCC--EEE-EEECCCcEEEEECCCCCCCccccce
Q 014003 240 I--CEGPWVFVG--MPNVVKAWHIESSAEF--SLDGPVGEVYSMVVANE--MLF-AGAQDGNILVWKGIPNTQNPFQLAA 310 (432)
Q Consensus 240 ~--~~~~~l~~~--~~~~i~vwd~~~~~~~--~~~~~~~~v~~l~~~~~--~l~-~g~~dg~i~~wd~~~~~~~~~~~~~ 310 (432)
. .++..++.. ..+.|.++|....... ...........+.|+++ +++ +...+++|.++|+.+++. ..
T Consensus 304 ~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl-----~~ 378 (567)
T 1qks_A 304 LASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL-----VA 378 (567)
T ss_dssp EECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE-----EE
T ss_pred EEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE-----EE
Confidence 3 233333333 5689999998765422 12223345667888887 554 455688999999998752 22
Q ss_pred eee-----ccccCeEEE-EEeCCEE-EEEe-CCCeEEEEECCC-------CceEEEecCCCCCcEEEEEc--CCEEEEEe
Q 014003 311 LLK-----GHTRPVTCL-AVGGKRL-YSGS-MDNTIRVWDLDT-------LEAVMTLNGHTDAPMSLLCW--DQYLLSCS 373 (432)
Q Consensus 311 ~~~-----~h~~~v~~l-~~~~~~l-~sgs-~dg~I~vwd~~~-------~~~~~~~~~~~~~v~~~~~~--~~~l~s~s 373 (432)
.+. .|...-..+ ..++..+ +++. .++.|.++|..+ .+.++++.........+..+ ++++.+..
T Consensus 379 ~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~ 458 (567)
T 1qks_A 379 IEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA 458 (567)
T ss_dssp EEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred EEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence 222 233222222 1123444 4443 468999999988 77888887654333333334 67888766
Q ss_pred C-------CCcEEEEEcCCC-----Cce-eEEeec----cCCcceEEEeeeeCCCCCcEEEEEe----CCCeEEEeeCCC
Q 014003 374 L-------DNTIKVWIMTEE-----GNL-EVAYTH----NEDHGVLALGGLNDPDGNPVLICSC----NDDSVHLYELPS 432 (432)
Q Consensus 374 ~-------dg~i~iwd~~~~-----~~~-~~~~~~----~~~~~~~~~~~~~sp~g~~~l~sg~----~Dg~I~iwdl~s 432 (432)
. .++|.++|+.+. ... ..+... -...........|+|+|+.++++.. .++.|.|+|.+|
T Consensus 459 ~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t 538 (567)
T 1qks_A 459 TLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT 538 (567)
T ss_dssp TTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred CCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCC
Confidence 3 469999999876 222 222110 0011223344556999997777643 479999999765
No 181
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.42 E-value=2.6e-10 Score=108.32 Aligned_cols=255 Identities=10% Similarity=0.050 Sum_probs=171.6
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEecc---------cCcEE-EEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEE
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGH---------KKAVS-GIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVI 230 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H---------~~~V~-~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~ 230 (432)
.+.+..++.++.|..+|..++ +.+..+... ...+. ... .++..++.++.++.|..+|.++|+.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDG-KEIWSVSLAEKDGWFSKEPALLSGGVT--VSGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTC-CEEEEEECCC---CCSCCCCCEEEEEE--EETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCC-ceeeeecCccccccccccCcccccCce--EeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 456677777889999999887 444444432 12232 222 24667888999999999999999998888
Q ss_pred eCCCcee--eEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCE------EEEEEcCCEEEEEECCCcEEEEECCCCC
Q 014003 231 NLGAEVG--SLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEV------YSMVVANEMLFAGAQDGNILVWKGIPNT 302 (432)
Q Consensus 231 ~~~~~~~--~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v------~~l~~~~~~l~~g~~dg~i~~wd~~~~~ 302 (432)
.....+. .+..++.+++.+.++.+..+|.++++..........+ .......+.+++++.++.+..+|..+++
T Consensus 130 ~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~ 209 (376)
T 3q7m_A 130 KVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQ 209 (376)
T ss_dssp ECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCC
T ss_pred eCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCc
Confidence 7654432 2334565566668899999999998865332222222 2233445688889999999999998875
Q ss_pred CCccccceeeecccc--C--------e-EEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEE
Q 014003 303 QNPFQLAALLKGHTR--P--------V-TCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLS 371 (432)
Q Consensus 303 ~~~~~~~~~~~~h~~--~--------v-~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 371 (432)
. ......... . + ......+..++.++.++.+..+|.++++.+..... .....+...+..++.
T Consensus 210 ~-----~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~l~~ 282 (376)
T 3q7m_A 210 M-----IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVDGNRIYL 282 (376)
T ss_dssp E-----EEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEETTEEEE
T ss_pred E-----EEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEECCEEEE
Confidence 3 222211100 0 1 11223478888999999999999999999887753 234556666889999
Q ss_pred EeCCCcEEEEEcCCCCceeEEeec-cCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 372 CSLDNTIKVWIMTEEGNLEVAYTH-NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 372 ~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
++.++.+..+|..+++.+...... ......... .+. .|+.++.+|.|.++|..+
T Consensus 283 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~------~~~-~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 283 VDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL------YNG-NLVVGDSEGYLHWINVED 337 (376)
T ss_dssp EETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE------ETT-EEEEECTTSEEEEEETTT
T ss_pred EcCCCeEEEEECCCCcEEEeecccCCCcccCCEE------ECC-EEEEEeCCCeEEEEECCC
Confidence 999999999999998876554421 112222222 133 577788899999999764
No 182
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.42 E-value=8.2e-11 Score=106.03 Aligned_cols=228 Identities=14% Similarity=0.081 Sum_probs=149.0
Q ss_pred cEEEEEecCCCCEEE-EEeCCCcEEEEeCCCCceeEEEe-CCCceeeEE--ECCCEEEEEcCCeEEEEEccCCceEeec-
Q 014003 194 AVSGIALPLRSDKLY-SGSRDGTVQLWDCHTGQSASVIN-LGAEVGSLI--CEGPWVFVGMPNVVKAWHIESSAEFSLD- 268 (432)
Q Consensus 194 ~V~~l~~~~~~~~l~-s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~~~~~--~~~~~l~~~~~~~i~vwd~~~~~~~~~~- 268 (432)
...++++++++++++ +.+.++.|.+||..+........ .......+. .++.++++..++.|.+||..........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~ 104 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF 104 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeec
Confidence 778999999999777 54778999999986654322111 112333444 4667666666889999998876654433
Q ss_pred CCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECC
Q 014003 269 GPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLD 344 (432)
Q Consensus 269 ~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~ 344 (432)
.....+.+++++++ ++++...++.|.+|+..+... ..........+..++++ ++++++...++.|.+||..
T Consensus 105 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 105 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-----TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC-----EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee-----EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence 22357889999877 555556678999997544321 11112223356678886 7766666678899999998
Q ss_pred CCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCC
Q 014003 345 TLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND 422 (432)
Q Consensus 345 ~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~D 422 (432)
..........+...+..++++ +.++++...++.|.+||............+......+++ +|+|+ ++++...+
T Consensus 180 ~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~----~~~g~-l~v~~~~~ 254 (270)
T 1rwi_B 180 SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAV----DSDRT-VYVADRGN 254 (270)
T ss_dssp TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEE----CTTCC-EEEEEGGG
T ss_pred CCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEE----CCCCC-EEEEECCC
Confidence 776654444444567788887 556666667889999998765433221122223344444 89998 88888899
Q ss_pred CeEEEeeCC
Q 014003 423 DSVHLYELP 431 (432)
Q Consensus 423 g~I~iwdl~ 431 (432)
+.|++|++.
T Consensus 255 ~~v~~~~~~ 263 (270)
T 1rwi_B 255 DRVVKLTSL 263 (270)
T ss_dssp TEEEEECCC
T ss_pred CEEEEEcCC
Confidence 999999875
No 183
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.42 E-value=6.1e-11 Score=112.86 Aligned_cols=246 Identities=12% Similarity=0.034 Sum_probs=153.7
Q ss_pred eCCCCcEEEEEEecccCcEEE-----EEecCCCCEEEEEeC-CCc--EEEEeCCCCceeEEEeCCCce---eeEEECCCE
Q 014003 177 FCGEGFTMLAKLEGHKKAVSG-----IALPLRSDKLYSGSR-DGT--VQLWDCHTGQSASVINLGAEV---GSLICEGPW 245 (432)
Q Consensus 177 ~~~~~~~~~~~l~~H~~~V~~-----l~~~~~~~~l~s~s~-Dg~--v~iWd~~~~~~~~~~~~~~~~---~~~~~~~~~ 245 (432)
+..++ ..+..+..|...... .+|+|||++|+.++. ++. |.+||+.+++........... ..+.++++.
T Consensus 16 ~~~~g-~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~ 94 (388)
T 3pe7_A 16 DASTG-AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDA 94 (388)
T ss_dssp CTTTC-CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSE
T ss_pred cCCCC-cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCE
Confidence 44455 556778888877776 889999999999887 673 888899988877665544332 245578887
Q ss_pred EEEE-cCCeEEEEEccCCceEee-cCCcCCEEEE--EEcCC--EEEEE----------------------ECCCcEEEEE
Q 014003 246 VFVG-MPNVVKAWHIESSAEFSL-DGPVGEVYSM--VVANE--MLFAG----------------------AQDGNILVWK 297 (432)
Q Consensus 246 l~~~-~~~~i~vwd~~~~~~~~~-~~~~~~v~~l--~~~~~--~l~~g----------------------~~dg~i~~wd 297 (432)
|+.. .++.+++||+.+++.... ..+...+... .++++ .++.. ..+..|.+||
T Consensus 95 l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 174 (388)
T 3pe7_A 95 LFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD 174 (388)
T ss_dssp EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence 7655 577999999999886533 3333334333 33566 44421 2447899999
Q ss_pred CCCCCCCccccceeeeccccCeEEEEEe---CCEEEEEeCC------CeEEEEECCCCceEEEecCCCC--CcEEEEEc-
Q 014003 298 GIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMD------NTIRVWDLDTLEAVMTLNGHTD--APMSLLCW- 365 (432)
Q Consensus 298 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~d------g~I~vwd~~~~~~~~~~~~~~~--~v~~~~~~- 365 (432)
+.+++ ...+..+...+..+.|+ ++.|+..+.+ ..|.++|...++. ..+..+.. .+....|+
T Consensus 175 ~~~g~------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~sp 247 (388)
T 3pe7_A 175 LKTGE------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVP 247 (388)
T ss_dssp TTTCC------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECT
T ss_pred CCCCc------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECC
Confidence 98874 23344456667777775 5677766653 3788888876554 44444442 46667776
Q ss_pred -CCEEEEEeC-CC----cEEEEEcCCCCceeEEeeccCCcceEEEe---eeeCCCCCcEEEEE--------eCCCeEEEe
Q 014003 366 -DQYLLSCSL-DN----TIKVWIMTEEGNLEVAYTHNEDHGVLALG---GLNDPDGNPVLICS--------CNDDSVHLY 428 (432)
Q Consensus 366 -~~~l~s~s~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~sp~g~~~l~sg--------~~Dg~I~iw 428 (432)
++.|+..+. ++ .|.+||+.+++...... ... ....... ..|+|||+.++++. ..+..|++|
T Consensus 248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~ 325 (388)
T 3pe7_A 248 DGSALVYVSYLKGSPDRFIYSADPETLENRQLTS-MPA-CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVF 325 (388)
T ss_dssp TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEE-ECC-EEEEEECTTSSEEEEEECCC------------CCCCEEEEE
T ss_pred CCCEEEEEecCCCCCcceEEEEecCCCceEEEEc-CCC-ceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEE
Confidence 666654443 22 39999998876433222 111 0011110 13589999555443 556789999
Q ss_pred eCCC
Q 014003 429 ELPS 432 (432)
Q Consensus 429 dl~s 432 (432)
|+.+
T Consensus 326 d~~~ 329 (388)
T 3pe7_A 326 NMKN 329 (388)
T ss_dssp ETTT
T ss_pred eccC
Confidence 9864
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.42 E-value=1.3e-10 Score=106.53 Aligned_cols=226 Identities=14% Similarity=0.073 Sum_probs=148.2
Q ss_pred CceEEeeccC-ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEe
Q 014003 153 KNVCYHWLSG-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN 231 (432)
Q Consensus 153 ~~~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~ 231 (432)
+.+++.+... .++++..++.|..|+.+++ ...+..+...+.+++++++|+++++...++.|.+||..+++......
T Consensus 31 eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~ 107 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIAD 107 (296)
T ss_dssp EEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEEC
T ss_pred cCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEee
Confidence 4566666666 6778888899999999876 45566788889999999999988888778999999998887543321
Q ss_pred CCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEE----EE-------------CCCc
Q 014003 232 LGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFA----GA-------------QDGN 292 (432)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~----g~-------------~dg~ 292 (432)
... ......+..++++++ ++++ |+ ..+.
T Consensus 108 ~~~---------------------------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~ 154 (296)
T 3e5z_A 108 SFE---------------------------------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRW 154 (296)
T ss_dssp EET---------------------------------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred ccC---------------------------------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcE
Confidence 100 001123445667766 4443 22 1345
Q ss_pred EEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECC-CCce---EEEecCCCCCcEEEEEc-
Q 014003 293 ILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLD-TLEA---VMTLNGHTDAPMSLLCW- 365 (432)
Q Consensus 293 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~-~~~~---~~~~~~~~~~v~~~~~~- 365 (432)
|..+|.. +. ...+..+......++++ ++.+++.+.++.|.+||+. +++. ...+..+...+..+.++
T Consensus 155 l~~~~~~-g~------~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~ 227 (296)
T 3e5z_A 155 VFRLAPD-GT------LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA 227 (296)
T ss_dssp EEEECTT-SC------EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT
T ss_pred EEEECCC-CC------EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC
Confidence 6666544 22 23334455567788887 7778777788999999987 5554 33443344455667776
Q ss_pred -CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 366 -DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 366 -~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
|+++++. ++.|.+||.. ++.+..+..+.. +..+++. +|+++ .|++++.++ +.-+++
T Consensus 228 ~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~---~~d~~-~L~v~t~~~-l~~~~~ 284 (296)
T 3e5z_A 228 GGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFG---GPEGR-TLYMTVSTE-FWSIET 284 (296)
T ss_dssp TSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEE---STTSC-EEEEEETTE-EEEEEC
T ss_pred CCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEE---CCCCC-EEEEEcCCe-EEEEEc
Confidence 5655544 8899999986 555555555544 5666653 68888 666666664 444443
No 185
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.40 E-value=2.1e-09 Score=101.90 Aligned_cols=251 Identities=11% Similarity=0.021 Sum_probs=159.2
Q ss_pred eEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEe----------CCCcEEEEeCCCCceeEEEeCC--------
Q 014003 172 FWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGS----------RDGTVQLWDCHTGQSASVINLG-------- 233 (432)
Q Consensus 172 ~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s----------~Dg~v~iWd~~~~~~~~~~~~~-------- 233 (432)
.|.+||..++ +.+.++.....+ .++++||+++|+.+. .+++|.+||..+.+.+..+...
T Consensus 48 ~v~v~D~~t~-~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g 124 (373)
T 2mad_H 48 QQWVLDAGSG-SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG 124 (373)
T ss_pred EEEEEECCCC-eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccC
Confidence 7899999887 667777654454 999999999999886 3678999999999988887754
Q ss_pred --CceeeEEECCCEEEEEc---CCeEEEEEccCCceEee-cCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccc
Q 014003 234 --AEVGSLICEGPWVFVGM---PNVVKAWHIESSAEFSL-DGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQ 307 (432)
Q Consensus 234 --~~~~~~~~~~~~l~~~~---~~~i~vwd~~~~~~~~~-~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~ 307 (432)
.....+.++++++++.. ++.|.++| .+++.... ......+......+..+++.+.||++.++|. +++.....
T Consensus 125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~ 202 (373)
T 2mad_H 125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAG 202 (373)
T ss_pred CCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEE
Confidence 11234557899888763 47899999 98887655 4433333222222336777889999999999 65421000
Q ss_pred cceeeeccccCe-EEEEE--eCCEEEEEeCCCeEEEEECCCCc--eEEEecCC----------CCCcEEEEEc--CCEEE
Q 014003 308 LAALLKGHTRPV-TCLAV--GGKRLYSGSMDNTIRVWDLDTLE--AVMTLNGH----------TDAPMSLLCW--DQYLL 370 (432)
Q Consensus 308 ~~~~~~~h~~~v-~~l~~--~~~~l~sgs~dg~I~vwd~~~~~--~~~~~~~~----------~~~v~~~~~~--~~~l~ 370 (432)
..........++ ....+ ++..++..+.++.+.+.|+.+.. .+..+... ......+.++ ++.++
T Consensus 203 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly 282 (373)
T 2mad_H 203 LVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY 282 (373)
T ss_pred eccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence 000000111221 11222 24444444478899999997653 23333211 1112223344 56666
Q ss_pred EEeC----------CCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEe-CCCeEEEeeCCC
Q 014003 371 SCSL----------DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC-NDDSVHLYELPS 432 (432)
Q Consensus 371 s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~-~Dg~I~iwdl~s 432 (432)
.+.. ++.|.++|+.+.+.+..+.... ....+++ +|||+++++++. .++.|.+||+.+
T Consensus 283 V~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~----s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISV----AQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred EEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEE----CCCCCeEEEEEcCCCCeEEEEECCC
Confidence 6543 3579999999988877774332 3345555 899995566665 589999999875
No 186
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.39 E-value=3.6e-11 Score=123.15 Aligned_cols=251 Identities=11% Similarity=-0.048 Sum_probs=156.5
Q ss_pred CCCCeEEEEeCCCCcEEEEEEecccCcEE---------EEEec--CCCCE-EEEEeC-CCcEEEEeCC--C-CceeEEEe
Q 014003 168 DECRFWHSWFCGEGFTMLAKLEGHKKAVS---------GIALP--LRSDK-LYSGSR-DGTVQLWDCH--T-GQSASVIN 231 (432)
Q Consensus 168 ~~d~~i~vw~~~~~~~~~~~l~~H~~~V~---------~l~~~--~~~~~-l~s~s~-Dg~v~iWd~~--~-~~~~~~~~ 231 (432)
+.++...+|....+ .....+..|...+. ...|+ |||++ |+.++. +..|.+|++. . ++ ...+.
T Consensus 44 ~~~~~~~l~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~ 121 (662)
T 3azo_A 44 AEAGRATLVRRRAD-GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLT 121 (662)
T ss_dssp TTTTEEEEEEECTT-SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECS
T ss_pred ccCCcEEEEEECCC-CCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEecc
Confidence 56788999986443 23556777777766 66665 99998 776554 5667777776 3 44 33333
Q ss_pred C------CCcee--eEEECCCEEEEE-cC----------CeEEEEEccC------CceEeec-CCcCCEEEEEEcCC--E
Q 014003 232 L------GAEVG--SLICEGPWVFVG-MP----------NVVKAWHIES------SAEFSLD-GPVGEVYSMVVANE--M 283 (432)
Q Consensus 232 ~------~~~~~--~~~~~~~~l~~~-~~----------~~i~vwd~~~------~~~~~~~-~~~~~v~~l~~~~~--~ 283 (432)
. ..... .+.++++.|+.. .+ ..|.+||+.+ +....+. .+...+..+.|+|+ .
T Consensus 122 ~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~ 201 (662)
T 3azo_A 122 PVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQ 201 (662)
T ss_dssp CCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSE
T ss_pred CCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCE
Confidence 2 12222 334688877654 33 4899999988 6666666 66677888899998 6
Q ss_pred EEEEECC--------CcEEEEECC-CCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCC--eEEEEECCCCceEE
Q 014003 284 LFAGAQD--------GNILVWKGI-PNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN--TIRVWDLDTLEAVM 350 (432)
Q Consensus 284 l~~g~~d--------g~i~~wd~~-~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg--~I~vwd~~~~~~~~ 350 (432)
|+.++.+ ..|++||+. ++.. .+.......|...+..+.|+ |++++++..++ .|.+||+.+++...
T Consensus 202 la~~~~~~~~~~~~~~~i~~~d~~~~g~~--~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~ 279 (662)
T 3azo_A 202 AVWLAWDHPRMPWEGTELKTARVTEDGRF--ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ 279 (662)
T ss_dssp EEEEEECTTCCTTTCEEEEEEEECTTSCE--EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE
T ss_pred EEEEECCCCCCCCCCcEEEEEEECCCCcc--cccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee
Confidence 7766644 379999998 4421 01233334557788999997 77888888888 77777877777655
Q ss_pred EecCCCCC--------cEEEEEc--CCEEEEEeCCCcEEEEEcCC-CCceeEEeeccCCcceEEEeeeeCCCCCcE-EEE
Q 014003 351 TLNGHTDA--------PMSLLCW--DQYLLSCSLDNTIKVWIMTE-EGNLEVAYTHNEDHGVLALGGLNDPDGNPV-LIC 418 (432)
Q Consensus 351 ~~~~~~~~--------v~~~~~~--~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~-l~s 418 (432)
....+... +..+.++ +.++++++. +.++||.+.. ...+..+..+...+..+ ++++++.+ +++
T Consensus 280 l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~-----~s~~~~~~~~~~ 353 (662)
T 3azo_A 280 LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAAT-----LTVSGTRAVGVA 353 (662)
T ss_dssp SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEE-----EEEETTEEEEEE
T ss_pred cccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEE-----EecCCCEEEEEE
Confidence 44433222 3456665 678888888 9999995442 23344444443332222 13444434 444
Q ss_pred EeCCCeEEEe
Q 014003 419 SCNDDSVHLY 428 (432)
Q Consensus 419 g~~Dg~I~iw 428 (432)
++.+....+|
T Consensus 354 ~~~~~~~~i~ 363 (662)
T 3azo_A 354 ASPRTAYEVV 363 (662)
T ss_dssp EETTEEEEEE
T ss_pred cCCCCCCEEE
Confidence 5555544444
No 187
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.39 E-value=6.5e-10 Score=104.62 Aligned_cols=253 Identities=14% Similarity=0.069 Sum_probs=163.8
Q ss_pred CCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEe----------CCCcEEEEeCCCCceeEEEeCCC-----
Q 014003 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGS----------RDGTVQLWDCHTGQSASVINLGA----- 234 (432)
Q Consensus 170 d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s----------~Dg~v~iWd~~~~~~~~~~~~~~----- 234 (432)
++.|.+.|..+. +.+.++..-..+ . ++++|||++|+.+. .+++|.+||..+.+.+..+....
T Consensus 58 ~~~V~ViD~~t~-~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~ 134 (386)
T 3sjl_D 58 VTQQFVIDGEAG-RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL 134 (386)
T ss_dssp SEEEEEEETTTT-EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CCEEEEEECCCC-eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccc
Confidence 578999999887 777888765555 4 99999999988775 36789999999999999887542
Q ss_pred ---c--eeeEEECCCEEEEEc---CCeEEEEEccCCceEeecCCcCCEEEEEE-cCCEEEEEECCCcEEEEECCC-CCCC
Q 014003 235 ---E--VGSLICEGPWVFVGM---PNVVKAWHIESSAEFSLDGPVGEVYSMVV-ANEMLFAGAQDGNILVWKGIP-NTQN 304 (432)
Q Consensus 235 ---~--~~~~~~~~~~l~~~~---~~~i~vwd~~~~~~~~~~~~~~~v~~l~~-~~~~l~~g~~dg~i~~wd~~~-~~~~ 304 (432)
. ...+.+++++++++. ++.|.++|+.+++......-.+. ..+.. ....+++.+.||++.+.++.. ++..
T Consensus 135 ~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~ 213 (386)
T 3sjl_D 135 VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE 213 (386)
T ss_dssp BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred cCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-ceeecCCCceeEEECCCCCEEEEECCCCCeEE
Confidence 1 234557899888763 58999999999987643322222 22222 233777889999999999876 3320
Q ss_pred ccccceeeeccccCeE-EEEEe--CCEEEEEeCCCeEEEEECCCCc--eEEEec------------CCCCCcEEEEEcCC
Q 014003 305 PFQLAALLKGHTRPVT-CLAVG--GKRLYSGSMDNTIRVWDLDTLE--AVMTLN------------GHTDAPMSLLCWDQ 367 (432)
Q Consensus 305 ~~~~~~~~~~h~~~v~-~l~~~--~~~l~sgs~dg~I~vwd~~~~~--~~~~~~------------~~~~~v~~~~~~~~ 367 (432)
......+.....++. ...|. ...++-.+.+|.|++.|+.+.. .+..+. ........+...++
T Consensus 214 -~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~ 292 (386)
T 3sjl_D 214 -ITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD 292 (386)
T ss_dssp -EEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT
T ss_pred -EeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCC
Confidence 000001111112221 13453 3344446668999999997664 333222 11112344433356
Q ss_pred EEEEEeC----------CCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEE-EeCCCeEEEeeCCC
Q 014003 368 YLLSCSL----------DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLIC-SCNDDSVHLYELPS 432 (432)
Q Consensus 368 ~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~s-g~~Dg~I~iwdl~s 432 (432)
.++.... .+.|.+.|+.+.+.+..+.... ....+.+ +||++.+|++ ...++.|.++|..+
T Consensus 293 ~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~lav----s~D~~~~ly~tn~~~~~VsViD~~t 363 (386)
T 3sjl_D 293 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINV----SQDEKPLLYALSTGDKTLYIHDAES 363 (386)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEE----CSSSSCEEEEEETTTTEEEEEETTT
T ss_pred eEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceEEE----CCCCCeEEEEEcCCCCeEEEEECCC
Confidence 6665532 2579999999998887776533 3344555 8999755555 45699999999865
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.39 E-value=3.2e-10 Score=117.14 Aligned_cols=235 Identities=8% Similarity=-0.001 Sum_probs=150.2
Q ss_pred cccCcEEEEEecCCCCEEEEEeCCC-----cEEEEeCCCCceeEEEeCCCce--eeEEECCCEEEEE-cCCe--------
Q 014003 190 GHKKAVSGIALPLRSDKLYSGSRDG-----TVQLWDCHTGQSASVINLGAEV--GSLICEGPWVFVG-MPNV-------- 253 (432)
Q Consensus 190 ~H~~~V~~l~~~~~~~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~-~~~~-------- 253 (432)
+|...+..++|||||++|+.++.++ +|++||+.+++..........+ ....++++.++.+ .++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccc
Confidence 3555788999999999998776543 8999999999877643322222 2344577766644 4443
Q ss_pred --------EEEEEccCCc---eEeecC--CcCCEEEEEEcCC--EEEEEEC-----CCcEEEEECCC------CCCCccc
Q 014003 254 --------VKAWHIESSA---EFSLDG--PVGEVYSMVVANE--MLFAGAQ-----DGNILVWKGIP------NTQNPFQ 307 (432)
Q Consensus 254 --------i~vwd~~~~~---~~~~~~--~~~~v~~l~~~~~--~l~~g~~-----dg~i~~wd~~~------~~~~~~~ 307 (432)
|++|++.+++ ...... +...+..+.++++ +|+.++. +..|++||+.+ +..
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---- 277 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL---- 277 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC----
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc----
Confidence 9999998876 232232 4456788999998 5555543 57899999976 321
Q ss_pred cceeeeccccCeEE-EEEeCCEEEEEeCC----CeEEEEECCCCc--eEEEecCCCC--CcEEEEEc-C-CEEEEEeCCC
Q 014003 308 LAALLKGHTRPVTC-LAVGGKRLYSGSMD----NTIRVWDLDTLE--AVMTLNGHTD--APMSLLCW-D-QYLLSCSLDN 376 (432)
Q Consensus 308 ~~~~~~~h~~~v~~-l~~~~~~l~sgs~d----g~I~vwd~~~~~--~~~~~~~~~~--~v~~~~~~-~-~~l~s~s~dg 376 (432)
....+..+...+.. +..+|+.|+..+.+ +.|.+||+.++. ....+..|.. .+..+.+. + .++++...|+
T Consensus 278 ~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g 357 (710)
T 2xdw_A 278 KWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV 357 (710)
T ss_dssp CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred ceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC
Confidence 13344445554443 33347777766553 369999998875 2345555544 56667776 4 5667777787
Q ss_pred c--EEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEe---CCCeEEEeeCCC
Q 014003 377 T--IKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC---NDDSVHLYELPS 432 (432)
Q Consensus 377 ~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~---~Dg~I~iwdl~s 432 (432)
. |.+||+.+++.+..+..+...+..+ .++|+++.++++.+ ..+.|..||+.+
T Consensus 358 ~~~l~~~~~~~g~~~~~l~~~~~~v~~~----~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 358 KNTLQLHDLATGALLKIFPLEVGSVVGY----SGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp EEEEEEEETTTCCEEEEECCCSSEEEEE----ECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred EEEEEEEECCCCCEEEecCCCCceEEEE----ecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 5 5566765666555555443322223 34788875555544 357899999753
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.38 E-value=4.1e-11 Score=123.50 Aligned_cols=232 Identities=9% Similarity=0.041 Sum_probs=144.9
Q ss_pred cccCcEEEEEecCCCCEEE-----EEeCCCcEEEEeCCCCcee-EEEeCCC--ceeeEEECCCEEEE-EcCCe-------
Q 014003 190 GHKKAVSGIALPLRSDKLY-----SGSRDGTVQLWDCHTGQSA-SVINLGA--EVGSLICEGPWVFV-GMPNV------- 253 (432)
Q Consensus 190 ~H~~~V~~l~~~~~~~~l~-----s~s~Dg~v~iWd~~~~~~~-~~~~~~~--~~~~~~~~~~~l~~-~~~~~------- 253 (432)
+|...+.+++|||||++|| +|+.+.+|++||+.+++.+ ....... ......++++.++. +.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 4666799999999999998 4555678999999999865 2111111 22344467776664 45444
Q ss_pred ------EEEEEccCCc---eEee--cCCcCCEEEEEEcCC--EEEEEECCC----cEEEEECCCCCCCccccceeeeccc
Q 014003 254 ------VKAWHIESSA---EFSL--DGPVGEVYSMVVANE--MLFAGAQDG----NILVWKGIPNTQNPFQLAALLKGHT 316 (432)
Q Consensus 254 ------i~vwd~~~~~---~~~~--~~~~~~v~~l~~~~~--~l~~g~~dg----~i~~wd~~~~~~~~~~~~~~~~~h~ 316 (432)
|++|++.++. .... ..+...+.++.++++ +|+.++.++ .|.++|..++. ...+..+.
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~------~~~l~~~~ 271 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD------FRLLVKGV 271 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS------CEEEEECS
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc------eEEeecCC
Confidence 9999998876 2222 234467889999998 566555544 66666544332 23344445
Q ss_pred cCeEEEEEe-CCEEEEEeC----CCeEEEEECCCCce---EEEecCC-CCCcEEEEEc-CCEEEEEeCCCcEEEEEcC-C
Q 014003 317 RPVTCLAVG-GKRLYSGSM----DNTIRVWDLDTLEA---VMTLNGH-TDAPMSLLCW-DQYLLSCSLDNTIKVWIMT-E 385 (432)
Q Consensus 317 ~~v~~l~~~-~~~l~sgs~----dg~I~vwd~~~~~~---~~~~~~~-~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~-~ 385 (432)
..+....+. +. ++..+. ++.|.+||+.+++. ...+..+ ...+..+.+. +.++++...|+..++|.+. +
T Consensus 272 ~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~ 350 (695)
T 2bkl_A 272 GAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLK 350 (695)
T ss_dssp SCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred CceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC
Confidence 555554444 66 554443 58999999988763 3333333 3456667777 5677888889998888765 3
Q ss_pred CCceeEEeec-cCCcceEEEeeeeCCCCCcEEEEEeC---CCeEEEeeCCC
Q 014003 386 EGNLEVAYTH-NEDHGVLALGGLNDPDGNPVLICSCN---DDSVHLYELPS 432 (432)
Q Consensus 386 ~~~~~~~~~~-~~~~~~~~~~~~~sp~g~~~l~sg~~---Dg~I~iwdl~s 432 (432)
++....+..+ ...+ ....++|+++.++++.+. .+.|++||+.+
T Consensus 351 g~~~~~l~~~~~~~v----~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 351 GKPVRTVQLPGVGAA----SNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp CCEEEECCCSSSSEE----CCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred CCeeEEecCCCCeEE----EEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 3333333222 2222 233447888755555433 47899999764
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.38 E-value=2.2e-10 Score=106.83 Aligned_cols=231 Identities=8% Similarity=-0.020 Sum_probs=158.1
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC------ce
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA------EV 236 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~------~~ 236 (432)
..++...++.|.+||..++ +.+.++. .......++++++++..++...++.|.+||..+++....+.... ..
T Consensus 56 lyv~~~~~~~v~viD~~t~-~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p 133 (328)
T 3dsm_A 56 GWIVVNNSHVIFAIDINTF-KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGST 133 (328)
T ss_dssp EEEEEGGGTEEEEEETTTC-CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBC
T ss_pred EEEEEcCCCEEEEEECccc-EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCc
Confidence 4555566789999999987 5666664 34678899998888555555489999999999999888888665 44
Q ss_pred eeEEECCCEEE-EE--cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC-EEEEEEC-C----------CcEEEEECCCC
Q 014003 237 GSLICEGPWVF-VG--MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQ-D----------GNILVWKGIPN 301 (432)
Q Consensus 237 ~~~~~~~~~l~-~~--~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~-d----------g~i~~wd~~~~ 301 (432)
..+..++..+. +. .++.|.++|+++++.............+.++++ .+++++. + +.|.++|..++
T Consensus 134 ~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~ 213 (328)
T 3dsm_A 134 EQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF 213 (328)
T ss_dssp CCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT
T ss_pred ceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC
Confidence 44444455444 44 378999999999886543333344567888887 4444443 3 78999998876
Q ss_pred CCCccccceeeecc-ccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEE--ecCCCCCcEEEEEc---CCEEEEE-
Q 014003 302 TQNPFQLAALLKGH-TRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMT--LNGHTDAPMSLLCW---DQYLLSC- 372 (432)
Q Consensus 302 ~~~~~~~~~~~~~h-~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~--~~~~~~~v~~~~~~---~~~l~s~- 372 (432)
+ ....+... ......++++ ++.|+++.. .|.+||..+++.... +.........++++ +.++++.
T Consensus 214 ~-----v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~ 286 (328)
T 3dsm_A 214 T-----VEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADA 286 (328)
T ss_dssp E-----EEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEEC
T ss_pred e-----EEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcc
Confidence 4 23333321 2357889997 788888765 899999998876421 22223456777775 4555665
Q ss_pred ---eCCCcEEEEEcCCCCceeEEeeccCCcceEEE
Q 014003 373 ---SLDNTIKVWIMTEEGNLEVAYTHNEDHGVLAL 404 (432)
Q Consensus 373 ---s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 404 (432)
..++.|.+||.. ++.+..+.....+ ..+++
T Consensus 287 ~~y~~~~~V~v~d~~-g~~~~~i~~G~~P-~~~~~ 319 (328)
T 3dsm_A 287 IDYQQQGIVYRYSPQ-GKLIDEFYVGIIP-GAFCW 319 (328)
T ss_dssp TTSSSEEEEEEECTT-CCEEEEEEEEESE-EEEEE
T ss_pred cccccCCEEEEECCC-CCEEEEEEeccCc-ceEEE
Confidence 578999999998 7777666543332 34444
No 191
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.37 E-value=1.5e-10 Score=108.44 Aligned_cols=226 Identities=10% Similarity=-0.029 Sum_probs=139.5
Q ss_pred ceEEeeccCceeeCCCC---C--eEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCC---------------
Q 014003 154 NVCYHWLSGNCVKGDEC---R--FWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD--------------- 213 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d---~--~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~D--------------- 213 (432)
...+.+.+..++..+.+ + .|.+|++.++ +....... .. +..++|+|+|+.|+.++.+
T Consensus 63 ~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g-~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~ 139 (347)
T 2gop_A 63 MPRISPDGKKIAFMRANEEKKVSEIWVADLETL-SSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPA 139 (347)
T ss_dssp EEEECTTSSEEEEEEEETTTTEEEEEEEETTTT-EEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------CCC
T ss_pred CeEECCCCCEEEEEEeccCCCcceEEEEECCCC-ceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccce
Confidence 45666667666655432 3 4778888776 44433333 34 9999999999999888742
Q ss_pred ------------CcEEEEeCCCCceeEEEeCCCceee--EEECCCEEEEEc-C------C-eEEEEEccCCceEeecCCc
Q 014003 214 ------------GTVQLWDCHTGQSASVINLGAEVGS--LICEGPWVFVGM-P------N-VVKAWHIESSAEFSLDGPV 271 (432)
Q Consensus 214 ------------g~v~iWd~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~-~------~-~i~vwd~~~~~~~~~~~~~ 271 (432)
..|.+||+.+++.+..+... .+.. +.+++ +++++. + . ...+|.+.+++...+..+
T Consensus 140 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~- 216 (347)
T 2gop_A 140 WFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK- 216 (347)
T ss_dssp C---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-
T ss_pred eecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccC-
Confidence 57999999988763333332 3333 33566 666552 2 1 334444445544444333
Q ss_pred CCEEEEEEcCCEEEEEECC--------CcEEEEECCCCCCCccccceeeeccccCeEE-EEEeCCEEEEEeCCCeEEEEE
Q 014003 272 GEVYSMVVANEMLFAGAQD--------GNILVWKGIPNTQNPFQLAALLKGHTRPVTC-LAVGGKRLYSGSMDNTIRVWD 342 (432)
Q Consensus 272 ~~v~~l~~~~~~l~~g~~d--------g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~l~sgs~dg~I~vwd 342 (432)
..+..+..++..++.++.+ ..|.+|| +++ .......+...+.. +.|++.++++++.++.++||
T Consensus 217 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-----~~~l~~~~~~~~~~~~~~sdg~~~~~~~~~~~~l~- 288 (347)
T 2gop_A 217 VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-----VMGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLY- 288 (347)
T ss_dssp ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-----EEESSTTCCSEEEEEEEETTEEEEEEEETTEEEEE-
T ss_pred cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCc-----eEeccccCCcccCCccEEcCcEEEEEecCCcEEEE-
Confidence 5555553333466666543 4688888 332 22333455666775 77762288889999999999
Q ss_pred CCCCceEEEecCCCCCcEEEEEcCCEEEEEeCCCcE-EEEEcCCCCceeEEeecc
Q 014003 343 LDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTI-KVWIMTEEGNLEVAYTHN 396 (432)
Q Consensus 343 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i-~iwd~~~~~~~~~~~~~~ 396 (432)
+.+++....+ .+...+.++.+++.++++++.++.. .+|.+. + ....+..++
T Consensus 289 ~~~g~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~-g-~~~~lt~~n 340 (347)
T 2gop_A 289 IWDGEIKPIA-KGRHWIMGFDVDEIVVYLKETATRLRELFTWD-G-EEKQLTDYN 340 (347)
T ss_dssp EESSSEEEEE-CSSSEEEEEEESSSEEEEEECSSSCCEEEEES-S-SEEECCCTT
T ss_pred EcCCceEEEe-cCCCeEEeeeeeCcEEEEEcCCCChHHheEeC-C-cEEEecccc
Confidence 8766664444 4567788888877666777777765 788776 3 344444443
No 192
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.37 E-value=6.1e-10 Score=102.61 Aligned_cols=231 Identities=12% Similarity=0.098 Sum_probs=148.4
Q ss_pred ecccCcEEEEEecCCCCEEEE-------EeCCCcEEEEeCCCCceeEEEe-----CCCceeeEE--EC-CCEEEEEcCCe
Q 014003 189 EGHKKAVSGIALPLRSDKLYS-------GSRDGTVQLWDCHTGQSASVIN-----LGAEVGSLI--CE-GPWVFVGMPNV 253 (432)
Q Consensus 189 ~~H~~~V~~l~~~~~~~~l~s-------~s~Dg~v~iWd~~~~~~~~~~~-----~~~~~~~~~--~~-~~~l~~~~~~~ 253 (432)
...-....+++|+++++++++ +..++.|.+||..+++...... ....+..+. .+ +.++++...+.
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~ 93 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG 93 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence 344456789999999988888 5778999999998887654332 113344444 34 55666666668
Q ss_pred EEEEEccCCceEee-cC-----CcCCEEEEEEcCC-EEEEEE-CC---------------CcEEEEECCCCCCCccccce
Q 014003 254 VKAWHIESSAEFSL-DG-----PVGEVYSMVVANE-MLFAGA-QD---------------GNILVWKGIPNTQNPFQLAA 310 (432)
Q Consensus 254 i~vwd~~~~~~~~~-~~-----~~~~v~~l~~~~~-~l~~g~-~d---------------g~i~~wd~~~~~~~~~~~~~ 310 (432)
|.+||.+ ++.... .. ....+.+++++++ .+++++ .+ +.|..||.. ++ ..
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~------~~ 165 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ------MI 165 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC------EE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC------EE
Confidence 9999998 665443 21 1234788999887 444444 33 567777754 32 11
Q ss_pred eeeccccCeEEEEEe------CCEEEEE-eCCCeEEEEECC-CCc-----eEEEecCCC-CCcEEEEEc--CCEEEEEeC
Q 014003 311 LLKGHTRPVTCLAVG------GKRLYSG-SMDNTIRVWDLD-TLE-----AVMTLNGHT-DAPMSLLCW--DQYLLSCSL 374 (432)
Q Consensus 311 ~~~~h~~~v~~l~~~------~~~l~sg-s~dg~I~vwd~~-~~~-----~~~~~~~~~-~~v~~~~~~--~~~l~s~s~ 374 (432)
.+..+......++++ ++.++.+ ..++.|.+||.+ +++ ....+..+. ..+..+.++ ++++++...
T Consensus 166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 122223344666666 4355554 567999999986 444 233444443 556777776 677777778
Q ss_pred CCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 375 DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 375 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
++.|.+||..+++.+..+..+...+..+++ +|+|+.++++...++.|..|++.
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~----~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPFEKPSNLHF----KPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSSSCEEEEEE----CTTSSEEEEEETTTTEEEEEECS
T ss_pred CCEEEEEcCCCCcEeEEEeCCCCCceeEEE----CCCCCEEEEEeCCCCeEEEEeCC
Confidence 899999999866665555544344444444 89998556666677899999875
No 193
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.36 E-value=6.4e-11 Score=122.41 Aligned_cols=243 Identities=10% Similarity=0.010 Sum_probs=150.5
Q ss_pred CCCCCCCCCCCCCCCceecCCCCCCC-----cccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeecc
Q 014003 87 SNHKKSPPSYNCPKNNVRVSSGSEEG-----TTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~las~~~Dg-----~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (432)
++|...+.+++|||||++||.++.++ +|++||+.++.... ..........+++.+.+
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~------------------~~~~~~~~~~~~wspDg 182 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP------------------DVLERVKFSCMAWTHDG 182 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE------------------EEEEEECSCCEEECTTS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc------------------ccccCcccceEEEEeCC
Confidence 34555678899999999999654433 89999877654310 00111111345555556
Q ss_pred CceeeCCCCCe----------------EEEEeCCCCc---EEEEEEecccCcEEEEEecCCCCEEEEEeC-----CCcEE
Q 014003 162 GNCVKGDECRF----------------WHSWFCGEGF---TMLAKLEGHKKAVSGIALPLRSDKLYSGSR-----DGTVQ 217 (432)
Q Consensus 162 ~~~~~g~~d~~----------------i~vw~~~~~~---~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~-----Dg~v~ 217 (432)
..++.+..++. |++|++.++. ..+.....|...+..++|+|||++|+.++. +..|.
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~ 262 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLW 262 (710)
T ss_dssp SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEE
T ss_pred CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEE
Confidence 66666555444 9999998763 233333346677889999999999988765 56788
Q ss_pred EEeCCC------Cc-eeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCE-EEEEEcCCEEEEEEC
Q 014003 218 LWDCHT------GQ-SASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEV-YSMVVANEMLFAGAQ 289 (432)
Q Consensus 218 iWd~~~------~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v-~~l~~~~~~l~~g~~ 289 (432)
+||+.+ +. ....+ ..+...+ ..+...++.++..+.
T Consensus 263 ~~d~~~~~~~~~~~~~~~~l-------------------------------------~~~~~~~~~~~s~dg~~l~~~s~ 305 (710)
T 2xdw_A 263 YCDLQQESNGITGILKWVKL-------------------------------------IDNFEGEYDYVTNEGTVFTFKTN 305 (710)
T ss_dssp EEEGGGSSSSSCSSCCCEEE-------------------------------------ECSSSSCEEEEEEETTEEEEEEC
T ss_pred EEECcccccccCCccceEEe-------------------------------------eCCCCcEEEEEeccCCEEEEEEC
Confidence 888765 32 12222 1112222 223333444444443
Q ss_pred ----CCcEEEEECCCCCCCccccceeeecccc--CeEEEEEe-C-CEEEEEeCCC--eEEEEECCCCceEEEecCCCCCc
Q 014003 290 ----DGNILVWKGIPNTQNPFQLAALLKGHTR--PVTCLAVG-G-KRLYSGSMDN--TIRVWDLDTLEAVMTLNGHTDAP 359 (432)
Q Consensus 290 ----dg~i~~wd~~~~~~~~~~~~~~~~~h~~--~v~~l~~~-~-~~l~sgs~dg--~I~vwd~~~~~~~~~~~~~~~~v 359 (432)
.+.|.+||+.++... ....+..|.. .+..+++. + .++++...|+ .|.+||+.+++.+..+..+...+
T Consensus 306 ~~~~~~~l~~~d~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v 382 (710)
T 2xdw_A 306 RHSPNYRLINIDFTDPEES---KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSV 382 (710)
T ss_dssp TTCTTCEEEEEETTSCCGG---GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEE
T ss_pred CCCCCCEEEEEeCCCCCcc---cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceE
Confidence 236999998776321 1233434433 57778876 4 4667777787 46777887888888888887777
Q ss_pred EEEEEc--CCEEE-EEe---CCCcEEEEEcCCCC
Q 014003 360 MSLLCW--DQYLL-SCS---LDNTIKVWIMTEEG 387 (432)
Q Consensus 360 ~~~~~~--~~~l~-s~s---~dg~i~iwd~~~~~ 387 (432)
..+.++ ++.++ +.+ ..++|.+||+.+++
T Consensus 383 ~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 383 VGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 777776 44444 433 34789999998766
No 194
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.33 E-value=3.8e-11 Score=114.39 Aligned_cols=241 Identities=10% Similarity=-0.050 Sum_probs=147.0
Q ss_pred EeCCCCcEEEEEEecccCc-----EEEEEecCCCCEEEEEeCC---CcEEEEeCCCCceeEEEeCCCce---eeEEECCC
Q 014003 176 WFCGEGFTMLAKLEGHKKA-----VSGIALPLRSDKLYSGSRD---GTVQLWDCHTGQSASVINLGAEV---GSLICEGP 244 (432)
Q Consensus 176 w~~~~~~~~~~~l~~H~~~-----V~~l~~~~~~~~l~s~s~D---g~v~iWd~~~~~~~~~~~~~~~~---~~~~~~~~ 244 (432)
.|..++ ..+..+..+... +..++|+|+|++|+....+ ..|.+||+.+++........... ..+.++++
T Consensus 15 ~d~~~g-~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 15 VDSDTQ-VKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER 93 (396)
T ss_dssp ECTTTC-CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred ecCCCC-cceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence 355555 445556555443 7788999999998877543 46888999988765544333332 23456888
Q ss_pred EEE-EEcCCeEEEEEccCCceEeecC-CcCCEEE---E----------------EEcCC--EEEEE-----ECCCcEEEE
Q 014003 245 WVF-VGMPNVVKAWHIESSAEFSLDG-PVGEVYS---M----------------VVANE--MLFAG-----AQDGNILVW 296 (432)
Q Consensus 245 ~l~-~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~---l----------------~~~~~--~l~~g-----~~dg~i~~w 296 (432)
.|+ ++.++.|.+||+.+++...... +...... + .++|+ .++.. ..+..|.+|
T Consensus 94 ~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE
Confidence 774 5577789999999887554332 2221111 1 22333 22221 456689999
Q ss_pred ECCCCCCCccccceeeeccccCeEEEEEe---CCEEEEEeCC------CeEEEEECCCCceEEEecCCC--CCcEEEEEc
Q 014003 297 KGIPNTQNPFQLAALLKGHTRPVTCLAVG---GKRLYSGSMD------NTIRVWDLDTLEAVMTLNGHT--DAPMSLLCW 365 (432)
Q Consensus 297 d~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~d------g~I~vwd~~~~~~~~~~~~~~--~~v~~~~~~ 365 (432)
|+.+++. ..+..+...+..+.|+ ++.|+..+.+ ..|.+||+.+++... +..+. ..+..+.++
T Consensus 174 d~~~g~~------~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~s 246 (396)
T 3c5m_A 174 DIETGEL------EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWI 246 (396)
T ss_dssp ETTTCCE------EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEEC
T ss_pred ECCCCcE------EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEEC
Confidence 9987642 2233456677888885 5556665543 469999987665433 33332 246667776
Q ss_pred --CCEEEEEeCC-----CcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCC-CCCcEEEEEe----------------C
Q 014003 366 --DQYLLSCSLD-----NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDP-DGNPVLICSC----------------N 421 (432)
Q Consensus 366 --~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~~l~sg~----------------~ 421 (432)
+++|+.++.+ +.|++||+.+++..... .... .. ..|+| +|+ ++++++ .
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~-~~-----~~~s~~dg~-~l~~~~~~~p~~~~~~~~~~~~~ 318 (396)
T 3c5m_A 247 PDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM-VMPP-CS-----HLMSNFDGS-LMVGDGCDAPVDVADADSYNIEN 318 (396)
T ss_dssp TTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE-ECCS-EE-----EEEECSSSS-EEEEEECCC----------CCCC
T ss_pred CCCCEEEEEecCCCCccceEEEEECCCCCeEEee-eCCC-CC-----CCccCCCCc-eEEEecCCcceeeccccccccCC
Confidence 6767666544 44999999877643322 2111 11 44588 999 666543 3
Q ss_pred CCeEEEeeCCC
Q 014003 422 DDSVHLYELPS 432 (432)
Q Consensus 422 Dg~I~iwdl~s 432 (432)
++.|++||+.+
T Consensus 319 ~~~i~~~d~~~ 329 (396)
T 3c5m_A 319 DPFLYVLNTKA 329 (396)
T ss_dssp CCEEEEEETTT
T ss_pred CCcEEEEeccc
Confidence 47899999753
No 195
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.31 E-value=3.5e-09 Score=98.48 Aligned_cols=260 Identities=8% Similarity=0.002 Sum_probs=169.1
Q ss_pred CCCCCCCCCCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeec--CCCceEEeeccCceeeCC
Q 014003 91 KSPPSYNCPKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERT--TPKNVCYHWLSGNCVKGD 168 (432)
Q Consensus 91 ~~v~~~~~s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~ 168 (432)
..|.+++|++++..+++.+.+++++.|. ... ...+... .+..+++.+.+..++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------------------~~~~~~~~~~~~~~~~~~~g~l~~~~~ 63 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT--AEP--------------------WLEISKKGLQLEGLNFDRQGQLFLLDV 63 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE--CEE--------------------EEEEESSCCCEEEEEECTTSCEEEEET
T ss_pred cccceeeecCCccceeEEeecccCcccc--cce--------------------eEEEeccCccccCcEECCCCCEEEEEC
Confidence 4578999999999999998899999992 100 0000000 112344444555556778
Q ss_pred CCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCC----CcEEEEeCCCCceeEEEeC---CCceeeEE-
Q 014003 169 ECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD----GTVQLWDCHTGQSASVINL---GAEVGSLI- 240 (432)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~D----g~v~iWd~~~~~~~~~~~~---~~~~~~~~- 240 (432)
.++.|.+||.+++ +.......+...+.+++++++++++++...+ +.|.+||.++++....+.. ...+..+.
T Consensus 64 ~~~~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~ 142 (333)
T 2dg1_A 64 FEGNIFKINPETK-EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVF 142 (333)
T ss_dssp TTCEEEEECTTTC-CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEE
T ss_pred CCCEEEEEeCCCC-cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEE
Confidence 8899999999876 3333333567889999999999988887776 6899999988876544431 22334443
Q ss_pred -ECCCEEEEEcC-------CeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEE-EEECCCcEEEEECCCCCCCcccc-
Q 014003 241 -CEGPWVFVGMP-------NVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLF-AGAQDGNILVWKGIPNTQNPFQL- 308 (432)
Q Consensus 241 -~~~~~l~~~~~-------~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~-~g~~dg~i~~wd~~~~~~~~~~~- 308 (432)
+++.++++... +.|..++.++++..........+..++++++ .++ +...++.|.+||+...... ...
T Consensus 143 d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~-~~~~ 221 (333)
T 2dg1_A 143 DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT-IQPF 221 (333)
T ss_dssp CTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS-EEEE
T ss_pred CCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC-cccc
Confidence 46777776643 4566666666555444333445788999887 454 4456789999998642110 110
Q ss_pred ----ceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCC------CcEEEEEc--CCEEEEEeC
Q 014003 309 ----AALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD------APMSLLCW--DQYLLSCSL 374 (432)
Q Consensus 309 ----~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~------~v~~~~~~--~~~l~s~s~ 374 (432)
...+.++ ..+..++++ ++++++...++.|.+||. +++.+..+..+.. .+.++++. ++.|+.++.
T Consensus 222 ~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 222 GATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 299 (333)
T ss_dssp EEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred cceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence 1111222 356678887 777777777899999998 5677777754432 57788876 456766655
Q ss_pred CC
Q 014003 375 DN 376 (432)
Q Consensus 375 dg 376 (432)
++
T Consensus 300 ~g 301 (333)
T 2dg1_A 300 DI 301 (333)
T ss_dssp CG
T ss_pred cc
Confidence 53
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.30 E-value=4e-08 Score=89.36 Aligned_cols=261 Identities=8% Similarity=-0.028 Sum_probs=162.9
Q ss_pred ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC-
Q 014003 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL- 232 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~- 232 (432)
.++....+...++...++.|.+|+.. +......+..+...+.+++++++++++++...++.|..||.. ++. ..+..
T Consensus 19 ~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~ 95 (299)
T 2z2n_A 19 GITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLP 95 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECS
T ss_pred ceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCC
Confidence 34444455555555567899999988 422222333456789999999999988887778999999986 443 33332
Q ss_pred --CCceeeEEE--CCCEEEEE-cCCeEEEEEccCCceEee--cCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCC
Q 014003 233 --GAEVGSLIC--EGPWVFVG-MPNVVKAWHIESSAEFSL--DGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQ 303 (432)
Q Consensus 233 --~~~~~~~~~--~~~~l~~~-~~~~i~vwd~~~~~~~~~--~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~ 303 (432)
......+.. ++.+.++. .++.|..||. ++..... ......+..++++++ ++++...++.|..||. +++.
T Consensus 96 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~ 173 (299)
T 2z2n_A 96 NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI 173 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE
Confidence 223444443 56666665 4678999998 5554332 234456889999877 4444445789999998 4431
Q ss_pred CccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEE-ecCCCCCcEEEEEc--CCEEEEEeCCCcE
Q 014003 304 NPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMT-LNGHTDAPMSLLCW--DQYLLSCSLDNTI 378 (432)
Q Consensus 304 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~s~s~dg~i 378 (432)
.. .....+...+..++++ +++.++...++.|.+||. +++.... +..+...+.++.++ ++.+++...++.|
T Consensus 174 ---~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 248 (299)
T 2z2n_A 174 ---TE-FKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKI 248 (299)
T ss_dssp ---EE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEE
T ss_pred ---EE-eeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceE
Confidence 11 1122334567888887 666666556889999999 6664332 33345667888887 5655555578899
Q ss_pred EEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 379 KVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 379 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
..||.. + .+..+........ .....+ ++|. ++++.. .+.|..++.+
T Consensus 249 ~~~d~~-g-~~~~~~~~~~~~~--~~~i~~-~~g~-l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 249 GRLTSN-N-IIEEYPIQIKSAE--PHGICF-DGET-IWFAME-CDKIGKLTLI 294 (299)
T ss_dssp EEEETT-T-EEEEEECSSSSCC--EEEEEE-CSSC-EEEEET-TTEEEEEEEC
T ss_pred EEECCC-C-ceEEEeCCCCCCc--cceEEe-cCCC-EEEEec-CCcEEEEEcC
Confidence 999983 3 2333322111111 223334 7887 555544 5667666654
No 197
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.29 E-value=5.9e-10 Score=103.94 Aligned_cols=216 Identities=12% Similarity=0.066 Sum_probs=134.4
Q ss_pred cCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeec--C
Q 014003 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLD--G 269 (432)
Q Consensus 192 ~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~--~ 269 (432)
-+.+.+|+++|+|+++++.+.++.+.+++...... +..... +. ..++.|.+||..+++..... .
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~---~~~~~~-------~~----~~~~~i~~~d~~~g~~~~~~~~~ 88 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFV---YQQRGL-------GP----IEEDTILVIDPNNAEILQSSGKN 88 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSC---BSCGGG-------CS----CCSCCEEEECTTTCCEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCccee---eccccc-------cc----ccCCcEEEEECCCCeEEeccCCC
Confidence 46799999999999999988886544333221111 100000 00 03456666666666554333 3
Q ss_pred CcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceee---------eccccCeEEEEEe---CCEEEEEe-C
Q 014003 270 PVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALL---------KGHTRPVTCLAVG---GKRLYSGS-M 334 (432)
Q Consensus 270 ~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~---------~~h~~~v~~l~~~---~~~l~sgs-~ 334 (432)
+......++++++ ++++...++.|++||...... .+..+ ..+-.....++++ ++++++.+ .
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~----~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~ 164 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEG----PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC 164 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSC----CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeE----EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC
Confidence 3457888999877 677777789999999765421 22333 2344467889996 55666665 6
Q ss_pred CCeEEEEECCCCceEEEecCCC----------CCcEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceeEEeec--cCCc
Q 014003 335 DNTIRVWDLDTLEAVMTLNGHT----------DAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTH--NEDH 399 (432)
Q Consensus 335 dg~I~vwd~~~~~~~~~~~~~~----------~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~ 399 (432)
++.|++|| .+++.+..+.... .....++++ +.++++...++.|++||..+++.+..+... ....
T Consensus 165 ~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~ 243 (329)
T 3fvz_A 165 NSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNV 243 (329)
T ss_dssp CCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCE
T ss_pred CCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCc
Confidence 89999999 5678877774322 236778776 456667778899999999877776665432 2222
Q ss_pred ceEEEeeeeCC------CCCcEEEEEeCCCeEEEeeCC
Q 014003 400 GVLALGGLNDP------DGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 400 ~~~~~~~~~sp------~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
..++ ++| +|+ ++++...+..|++||+.
T Consensus 244 ~~~~----~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~ 276 (329)
T 3fvz_A 244 FAIS----YIPGFLFAVNGK-PYFGDQEPVQGFVMNFS 276 (329)
T ss_dssp EEEE----EETTEEEEEECC-CCTTCSCCCCEEEEETT
T ss_pred ceee----ecCCEEEEeCCC-EEeccCCCcEEEEEEcC
Confidence 3333 356 333 22233345588899865
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.28 E-value=3.6e-08 Score=89.75 Aligned_cols=259 Identities=10% Similarity=0.040 Sum_probs=164.2
Q ss_pred ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC-
Q 014003 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL- 232 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~- 232 (432)
.++....+...++...++.|.+|+.. +......+..+...+.++++.++++++++...++.|..+|.. ++.. .+..
T Consensus 24 ~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~ 100 (300)
T 2qc5_A 24 GITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLP 100 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECS
T ss_pred eeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCC
Confidence 34444455556666677899999988 422222333445789999999999988887778899999988 6553 3332
Q ss_pred --CCceeeEE--ECCCEEEEEc-CCeEEEEEccCCceEee--cCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCC
Q 014003 233 --GAEVGSLI--CEGPWVFVGM-PNVVKAWHIESSAEFSL--DGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQ 303 (432)
Q Consensus 233 --~~~~~~~~--~~~~~l~~~~-~~~i~vwd~~~~~~~~~--~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~ 303 (432)
......+. .++.+.++.. ++.|..++.. ++.... ......+.+++++++ ++++...++.|..+|. +++.
T Consensus 101 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 178 (300)
T 2qc5_A 101 QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKL 178 (300)
T ss_dssp STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcE
Confidence 23344444 3566666664 6789999987 554332 334567889999877 4444445788999998 4331
Q ss_pred CccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEE-ecCCCCCcEEEEEc--CCEEEEEeCCCcE
Q 014003 304 NPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMT-LNGHTDAPMSLLCW--DQYLLSCSLDNTI 378 (432)
Q Consensus 304 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~s~s~dg~i 378 (432)
. ......+...+..++++ ++..++....+.|.+||. +++.... +..+...+.++.++ +++.++...++.|
T Consensus 179 ---~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i 253 (300)
T 2qc5_A 179 ---E-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQI 253 (300)
T ss_dssp ---E-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEE
T ss_pred ---E-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeE
Confidence 1 11122334567888887 665565556778999998 5554433 33345567788877 5655665567899
Q ss_pred EEEEcCCCCceeEEee--ccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 379 KVWIMTEEGNLEVAYT--HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 379 ~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
..||.. ++ +..+.. ....+..+++ +++|. ++++.. . .|..+|.+
T Consensus 254 ~~~~~~-g~-~~~~~~~~~~~~~~~i~~----~~~g~-l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 254 GRITND-NT-IQEYQLQTENAEPHGITF----GKDGS-VWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EEECTT-SC-EEEEECCSTTCCCCCEEE----CTTSC-EEEECS-S-EEEEEEEC
T ss_pred EEECCC-Cc-EEEEECCccCCccceeEe----CCCCC-EEEEcc-C-ceEEeCCC
Confidence 999983 33 222221 2233445555 78988 555444 4 77777754
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.25 E-value=2.4e-09 Score=111.12 Aligned_cols=234 Identities=11% Similarity=-0.014 Sum_probs=142.6
Q ss_pred ccCcEEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCceeEEEeCCCc--eeeEEECCCEEEE-EcCC----------
Q 014003 191 HKKAVSGIALPLRSDKLYSGSRD-----GTVQLWDCHTGQSASVINLGAE--VGSLICEGPWVFV-GMPN---------- 252 (432)
Q Consensus 191 H~~~V~~l~~~~~~~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~l~~-~~~~---------- 252 (432)
|...+..++|+|||++|+.++.+ .+|++||+.+++.+........ .....++ +.++. ..++
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence 44578899999999999887654 4699999999987654221111 1223346 65554 4333
Q ss_pred ----eEEEEEccCCc---eEeecC--CcCCEEEEEEcCC--EEEEEECC-----CcEEEEECCCCCCCccccceeeeccc
Q 014003 253 ----VVKAWHIESSA---EFSLDG--PVGEVYSMVVANE--MLFAGAQD-----GNILVWKGIPNTQNPFQLAALLKGHT 316 (432)
Q Consensus 253 ----~i~vwd~~~~~---~~~~~~--~~~~v~~l~~~~~--~l~~g~~d-----g~i~~wd~~~~~~~~~~~~~~~~~h~ 316 (432)
.|++|++.++. ...... +...+..+.++++ +|+..+.+ ..|++||+.++.. +....+..+.
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~---~~~~~l~~~~ 316 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI---GPVTALIPDL 316 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE---CCCEEEECSS
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC---cccEEecCCC
Confidence 48899997765 233332 2335889999998 56665543 4899999877521 1022333343
Q ss_pred cCeEE-EEEeCCEEEEEeC----CCeEEEEECCCC--ceEEEecCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEcC-CCC
Q 014003 317 RPVTC-LAVGGKRLYSGSM----DNTIRVWDLDTL--EAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMT-EEG 387 (432)
Q Consensus 317 ~~v~~-l~~~~~~l~sgs~----dg~I~vwd~~~~--~~~~~~~~~~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~-~~~ 387 (432)
..+.. +..+++.|+..+. ++.|.+||+.++ +....+..+...+..+.+. +.++++...|+..+||.+. +++
T Consensus 317 ~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~ 396 (741)
T 1yr2_A 317 KAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGK 396 (741)
T ss_dssp SSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSC
T ss_pred CceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCC
Confidence 33333 3345888887775 456999999885 3333444444445566666 5677788889988888665 333
Q ss_pred ceeEEeec-cCCcceEEEeeeeCCCCCcEEEEEe---CCCeEEEeeCCC
Q 014003 388 NLEVAYTH-NEDHGVLALGGLNDPDGNPVLICSC---NDDSVHLYELPS 432 (432)
Q Consensus 388 ~~~~~~~~-~~~~~~~~~~~~~sp~g~~~l~sg~---~Dg~I~iwdl~s 432 (432)
....+... ...+ ....++|+++.++++.+ ..++|++||+.+
T Consensus 397 ~~~~l~~~~~~~v----~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 397 PAGAVSLPGIGSA----SGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp EEEECBCSSSCEE----EEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred ceeeccCCCCeEE----EEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 33333221 2222 22334788875655544 347899999754
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.24 E-value=1.4e-09 Score=97.96 Aligned_cols=227 Identities=11% Similarity=0.013 Sum_probs=146.0
Q ss_pred ceEEeeccCcee-eCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC
Q 014003 154 NVCYHWLSGNCV-KGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (432)
Q Consensus 154 ~~~~~~~~~~~~-~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 232 (432)
.+++.+.+...+ +...++.|.+|+..+... ......+...+.+++++++++++++.. ++.|.+||....... .+..
T Consensus 28 ~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~ 104 (270)
T 1rwi_B 28 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPF 104 (270)
T ss_dssp EEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCC
T ss_pred ceEECCCCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeec
Confidence 445555555555 556788999999865422 211123446788999999999666665 889999998765443 2221
Q ss_pred C--CceeeEE--ECCCEEEEE-cCCeEEEEEccCCceEee-cCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCC
Q 014003 233 G--AEVGSLI--CEGPWVFVG-MPNVVKAWHIESSAEFSL-DGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQN 304 (432)
Q Consensus 233 ~--~~~~~~~--~~~~~l~~~-~~~~i~vwd~~~~~~~~~-~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~ 304 (432)
. .....+. .++.++++. .++.|.+|+..+...... ......+.+++++++ ++++...++.|.+||......
T Consensus 105 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~- 183 (270)
T 1rwi_B 105 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ- 183 (270)
T ss_dssp CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE-
T ss_pred CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce-
Confidence 1 2334444 356666665 567899997665544322 222345678888876 555555678999999876532
Q ss_pred ccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEE
Q 014003 305 PFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKV 380 (432)
Q Consensus 305 ~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~i 380 (432)
......+...+..++++ |..+++...++.|.+||............+...+.+++++ ++++++...++.|++
T Consensus 184 ----~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~ 259 (270)
T 1rwi_B 184 ----VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVK 259 (270)
T ss_dssp ----EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred ----EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEE
Confidence 11112233567889997 5566666678899999987655443333333567788887 678888888999999
Q ss_pred EEcCCCCc
Q 014003 381 WIMTEEGN 388 (432)
Q Consensus 381 wd~~~~~~ 388 (432)
+++...+.
T Consensus 260 ~~~~~~~~ 267 (270)
T 1rwi_B 260 LTSLEHHH 267 (270)
T ss_dssp ECCCGGGS
T ss_pred EcCCCccc
Confidence 99876543
No 201
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.23 E-value=1.2e-08 Score=97.57 Aligned_cols=252 Identities=12% Similarity=0.067 Sum_probs=163.7
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEe----------CCCcEEEEeCCCCceeEEEeCC-------
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGS----------RDGTVQLWDCHTGQSASVINLG------- 233 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s----------~Dg~v~iWd~~~~~~~~~~~~~------- 233 (432)
+.|.++|..+. +.+.++..-..+ .++++||+++|+.+. .++.|.++|..+++.+..+...
T Consensus 99 ~~VsVID~~t~-~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~ 175 (426)
T 3c75_H 99 TQQFVIDGSTG-RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV 175 (426)
T ss_dssp EEEEEEETTTT-EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CeEEEEECCCC-EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence 78999999988 778888755566 899999999988876 3678999999999999988754
Q ss_pred -C--ceeeEEECCCEEEEEc---CCeEEEEEccCCceEeecCCcCCEEEEEEcC-CEEEEEECCCcEEEEECCCCCCCcc
Q 014003 234 -A--EVGSLICEGPWVFVGM---PNVVKAWHIESSAEFSLDGPVGEVYSMVVAN-EMLFAGAQDGNILVWKGIPNTQNPF 306 (432)
Q Consensus 234 -~--~~~~~~~~~~~l~~~~---~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~-~~l~~g~~dg~i~~wd~~~~~~~~~ 306 (432)
. ....+.+++++++++. ++.|.++|+.+.+......-.+. ..+.... ..+++.+.||++.+.+...++.. .
T Consensus 176 g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~-~ 253 (426)
T 3c75_H 176 GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCRDGSLARVDFADGETK-V 253 (426)
T ss_dssp SCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEETTSSEEEEECCTTCCE-E
T ss_pred CCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcCCCCEEEEECCCCcEE-E
Confidence 1 1234557898888763 57899999999987643222221 2222222 36777888999999998444321 0
Q ss_pred ccceeeeccccCeE-EEEEe--CCEEEEEeCCCeEEEEECCCCceE--EEec------------CCCCCcEEEEEcCCEE
Q 014003 307 QLAALLKGHTRPVT-CLAVG--GKRLYSGSMDNTIRVWDLDTLEAV--MTLN------------GHTDAPMSLLCWDQYL 369 (432)
Q Consensus 307 ~~~~~~~~h~~~v~-~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~--~~~~------------~~~~~v~~~~~~~~~l 369 (432)
.....+.....++. .+.+. +..++..+..+.|.+.|+...... ..+. ........+...++.+
T Consensus 254 ~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rl 333 (426)
T 3c75_H 254 TNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRI 333 (426)
T ss_dssp EECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEE
T ss_pred EeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEE
Confidence 00011111111211 23343 666666678899999998765432 1111 0111123444445665
Q ss_pred EEEeC----------CCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEe-CCCeEEEeeCCC
Q 014003 370 LSCSL----------DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC-NDDSVHLYELPS 432 (432)
Q Consensus 370 ~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~-~Dg~I~iwdl~s 432 (432)
++... ++.|.++|+.+.+.+..+.... ....+.+ +|||++++++.. .++.|.++|+.|
T Consensus 334 yVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~----spDg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 334 YLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINV----SQDAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEE----CCSSSCEEEEEETTTTEEEEEETTT
T ss_pred EEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEE----ccCCCEEEEEEcCCCCeEEEEECCC
Confidence 55532 3579999999999888776433 2234444 899985566665 699999999875
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.22 E-value=5.5e-08 Score=88.43 Aligned_cols=228 Identities=10% Similarity=0.071 Sum_probs=149.4
Q ss_pred EecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEe--CCCceeeEE--ECCCEEEEEc-CCeEEEEEccCC
Q 014003 188 LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN--LGAEVGSLI--CEGPWVFVGM-PNVVKAWHIESS 262 (432)
Q Consensus 188 l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~--~~~~~~~~~--~~~~~l~~~~-~~~i~vwd~~~~ 262 (432)
+..+...+.+++++++|+++++...++.|.+||.. ++...... .......+. .++.+.++.. ++.|..|+.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 34556789999999999988877778999999998 65443321 123344444 3566666664 6889999986 3
Q ss_pred ceEee--cCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCC
Q 014003 263 AEFSL--DGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDN 336 (432)
Q Consensus 263 ~~~~~--~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg 336 (432)
+.... ......+.+++++++ ++++...++.|..||. ++.. . ......+...+..++++ ++.+++...++
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~---~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 162 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI---R-EYELPNKGSYPSFITLGSDNALWFTENQNN 162 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE---E-EEECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE---E-EecCCCCCCCCceEEEcCCCCEEEEeCCCC
Confidence 33222 234557889999876 4444556789999998 4321 1 11122334567888887 66666666678
Q ss_pred eEEEEECCCCceEEE-ecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEee--ccCCcceEEEeeeeCCC
Q 014003 337 TIRVWDLDTLEAVMT-LNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYT--HNEDHGVLALGGLNDPD 411 (432)
Q Consensus 337 ~I~vwd~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~sp~ 411 (432)
.|..||. +++.... +......+..+.++ +++.++...++.|.+||. +++. ..+.. ....+..+++ +++
T Consensus 163 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~----~~~ 235 (299)
T 2z2n_A 163 AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-TEFKIPTPNARPHAITA----GAG 235 (299)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEE----CST
T ss_pred EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-EEEECCCCCCCceeEEE----CCC
Confidence 9999999 6665443 33344557778777 566666666889999998 5543 22221 1222333344 889
Q ss_pred CCcEEEEEeCCCeEEEeeC
Q 014003 412 GNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 412 g~~~l~sg~~Dg~I~iwdl 430 (432)
|. ++++...++.|..||.
T Consensus 236 g~-l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 236 ID-LWFTEWGANKIGRLTS 253 (299)
T ss_dssp TC-EEEEETTTTEEEEEET
T ss_pred CC-EEEeccCCceEEEECC
Confidence 88 6666667788999885
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.22 E-value=5.4e-09 Score=96.18 Aligned_cols=230 Identities=9% Similarity=0.042 Sum_probs=145.3
Q ss_pred ceEEeeccCceee-------CCCCCeEEEEeCCCCcEEEEEE---ecccCcEEEEEecCC-CCEEEEEeCCCcEEEEeCC
Q 014003 154 NVCYHWLSGNCVK-------GDECRFWHSWFCGEGFTMLAKL---EGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCH 222 (432)
Q Consensus 154 ~~~~~~~~~~~~~-------g~~d~~i~vw~~~~~~~~~~~l---~~H~~~V~~l~~~~~-~~~l~s~s~Dg~v~iWd~~ 222 (432)
.+++...+...++ +..++.|.+|+..++....... .++...+.+++++++ ++++++.. ++.|.+||.+
T Consensus 22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~ 100 (314)
T 1pjx_A 22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD 100 (314)
T ss_dssp EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETT
T ss_pred CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC
Confidence 4444444445555 5677899999987663221111 136678999999999 66555544 4579999998
Q ss_pred CCceeEE-EeCC-----CceeeEE--ECCCEEEEEcC----------------CeEEEEEccCCceEeecCCcCCEEEEE
Q 014003 223 TGQSASV-INLG-----AEVGSLI--CEGPWVFVGMP----------------NVVKAWHIESSAEFSLDGPVGEVYSMV 278 (432)
Q Consensus 223 ~~~~~~~-~~~~-----~~~~~~~--~~~~~l~~~~~----------------~~i~vwd~~~~~~~~~~~~~~~v~~l~ 278 (432)
++.... .... ..+..+. .++.+.++... +.|..++.. ++.............++
T Consensus 101 -g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~ 178 (314)
T 1pjx_A 101 -GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIA 178 (314)
T ss_dssp -SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEE
T ss_pred -CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEE
Confidence 765433 2211 1133444 36666666532 467777765 44433333344567888
Q ss_pred Ec----CC--EEEEE-ECCCcEEEEECC-CCCCCccccceeeeccc-cCeEEEEEe--CCEEEEEeCCCeEEEEECCCCc
Q 014003 279 VA----NE--MLFAG-AQDGNILVWKGI-PNTQNPFQLAALLKGHT-RPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLE 347 (432)
Q Consensus 279 ~~----~~--~l~~g-~~dg~i~~wd~~-~~~~~~~~~~~~~~~h~-~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~ 347 (432)
++ ++ .++++ ..++.|.+||.. .+.....+....+..+. .....++++ |+++++...++.|.+||.++++
T Consensus 179 ~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 179 VRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp EEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS
T ss_pred EecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc
Confidence 88 77 45444 567899999976 33211011222333333 456778887 7777777788999999998888
Q ss_pred eEEEecCCCCCcEEEEEc--CCEE-EEEeCCCcEEEEEcCCC
Q 014003 348 AVMTLNGHTDAPMSLLCW--DQYL-LSCSLDNTIKVWIMTEE 386 (432)
Q Consensus 348 ~~~~~~~~~~~v~~~~~~--~~~l-~s~s~dg~i~iwd~~~~ 386 (432)
.+..+..+...+.+++++ ++.| ++...++.|..|++...
T Consensus 259 ~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 259 PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 877777676778888886 5645 45556789999998754
No 204
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.20 E-value=2.8e-09 Score=96.71 Aligned_cols=215 Identities=10% Similarity=0.004 Sum_probs=139.0
Q ss_pred CCCceecCCCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCCCCCeEEEEeC
Q 014003 99 PKNNVRVSSGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGDECRFWHSWFC 178 (432)
Q Consensus 99 s~~g~~las~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~vw~~ 178 (432)
+..|+.|++++.|+.|.+||.+++...+..... .. .....+.+.+.+..+++ .++.|..||.
T Consensus 2 ~~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~----~~------------~~~~~~~~~pdG~ilvs--~~~~V~~~d~ 63 (276)
T 3no2_A 2 SSPQHLLVGGSGWNKIAIINKDTKEIVWEYPLE----KG------------WECNSVAATKAGEILFS--YSKGAKMITR 63 (276)
T ss_dssp -CCCEEEEECTTCSEEEEEETTTTEEEEEEECC----TT------------CCCCEEEECTTSCEEEE--CBSEEEEECT
T ss_pred CCCCcEEEeeCCCCEEEEEECCCCeEEEEeCCC----cc------------CCCcCeEECCCCCEEEe--CCCCEEEECC
Confidence 346788999999999999987666542221110 00 01234445555555663 4678999999
Q ss_pred CCCcEEEEEEecc-cCcEEEEEecCCCCEEEEEeC-CCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEE
Q 014003 179 GEGFTMLAKLEGH-KKAVSGIALPLRSDKLYSGSR-DGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKA 256 (432)
Q Consensus 179 ~~~~~~~~~l~~H-~~~V~~l~~~~~~~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v 256 (432)
++ +.+..+..+ ...+.++.+.++|+.+++.+. ++.|..+|. +|+.+..+......
T Consensus 64 -~G-~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~-------------------- 120 (276)
T 3no2_A 64 -DG-RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI-------------------- 120 (276)
T ss_dssp -TS-CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC--------------------
T ss_pred -CC-CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC--------------------
Confidence 55 667777765 357899999999999999887 788888886 67766655421110
Q ss_pred EEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEE
Q 014003 257 WHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSG 332 (432)
Q Consensus 257 wd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sg 332 (432)
..+......+.+.++ ++++...++.|..||.. ++ .+..+.... ...++... ++.++++
T Consensus 121 -----------~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~-----~~w~~~~~~-~~~~~~~~~~g~~~v~~ 182 (276)
T 3no2_A 121 -----------ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ-----LLNSVKLSG-TPFSSAFLDNGDCLVAC 182 (276)
T ss_dssp -----------SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC-----EEEEEECSS-CCCEEEECTTSCEEEEC
T ss_pred -----------CcccccccCceECCCCCEEEEecCCCEEEEECCC-CC-----EEEEEECCC-CccceeEcCCCCEEEEe
Confidence 011112222334444 88888889999999987 54 344454432 33344443 8889988
Q ss_pred eCCCeEEEEECCCCceEEEecCCCC------CcEEEEEc--CCEEEEE
Q 014003 333 SMDNTIRVWDLDTLEAVMTLNGHTD------APMSLLCW--DQYLLSC 372 (432)
Q Consensus 333 s~dg~I~vwd~~~~~~~~~~~~~~~------~v~~~~~~--~~~l~s~ 372 (432)
+.++.|..+|.++|+.+.++..+.. .+..+... ++.+++.
T Consensus 183 ~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 183 GDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp BTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 8888999999999999999864321 14444444 5555555
No 205
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.20 E-value=6e-09 Score=98.39 Aligned_cols=167 Identities=13% Similarity=0.111 Sum_probs=129.7
Q ss_pred cEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-----------eeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCC
Q 014003 194 AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ-----------SASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESS 262 (432)
Q Consensus 194 ~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~ 262 (432)
.+..+++++...++++|+.|+ +++|++++.. ......... +..+..++.+++++.++.|++||+.+.
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~~~~~l~v~dv~sl 116 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVSTRNALYSLDLEEL 116 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEEESSEEEEEESSST
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEEcCCcEEEEEchhh
Confidence 689999999999999999985 6669865332 224455666 777777889999999999999998776
Q ss_pred ceE-eecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEE
Q 014003 263 AEF-SLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVW 341 (432)
Q Consensus 263 ~~~-~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vw 341 (432)
... ....+...+.++.+.+..+++++.||.|.+||+.++.. . .+...|+|++|+.+-++.|..||++++|
T Consensus 117 ~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~-----~----~~~~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 117 SEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST-----K----QLAQNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp TCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE-----E----EEEESEEEEEECSSEEEEEETTSCEEEE
T ss_pred hccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcc-----c----cccCCceEEEEcCCceEEEEcCCcEEEE
Confidence 532 34455667888888776789999999999999987642 1 1456899999995558999999999999
Q ss_pred ECCCCce--EEEe------c---CCCCCcEEEEEc--CCEEEE
Q 014003 342 DLDTLEA--VMTL------N---GHTDAPMSLLCW--DQYLLS 371 (432)
Q Consensus 342 d~~~~~~--~~~~------~---~~~~~v~~~~~~--~~~l~s 371 (432)
+...++. ..++ . +|...|.++.|. +.++++
T Consensus 188 ~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 188 AWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 9988776 6666 2 477889999998 345554
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.17 E-value=4.4e-10 Score=116.71 Aligned_cols=243 Identities=9% Similarity=0.002 Sum_probs=141.0
Q ss_pred CCCCCCCCCCCCCCCceecCCCCCC-----CcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeecc
Q 014003 87 SNHKKSPPSYNCPKNNVRVSSGSEE-----GTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~las~~~D-----g~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (432)
++|...+.+++|||||++||.++.+ .+|++||+.++..... .........+++.+.
T Consensus 159 ~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~------------------~~~~~~~~~~~wspD- 219 (741)
T 1yr2_A 159 KDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD------------------ELKWVKFSGLAWLGN- 219 (741)
T ss_dssp ----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE------------------EEEEEESCCCEESTT-
T ss_pred cCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc------------------cCCCceeccEEEECC-
Confidence 3454567789999999999876543 4699999877653100 000000123334444
Q ss_pred CceeeCCC--------------CCeEEEEeCCCCc---EEEEEEecccCcEEEEEecCCCCEEEEEeCCC-----cEEEE
Q 014003 162 GNCVKGDE--------------CRFWHSWFCGEGF---TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDG-----TVQLW 219 (432)
Q Consensus 162 ~~~~~g~~--------------d~~i~vw~~~~~~---~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg-----~v~iW 219 (432)
..++.+.. ...|.+|++.++. ..+.....|...+..+.|+|||++|+..+.++ .|.+|
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~ 299 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVA 299 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEE
Confidence 44444333 3358999997653 23333334445689999999999998887654 67788
Q ss_pred eCCCC--ceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCCEEEEEEC----CCcE
Q 014003 220 DCHTG--QSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ----DGNI 293 (432)
Q Consensus 220 d~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~----dg~i 293 (432)
|+.++ ++...+. .........+....+.|+..+. ++.|
T Consensus 300 d~~~~~~~~~~~l~------------------------------------~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l 343 (741)
T 1yr2_A 300 RVTNGKIGPVTALI------------------------------------PDLKAQWDFVDGVGDQLWFVSGDGAPLKKI 343 (741)
T ss_dssp EEETTEECCCEEEE------------------------------------CSSSSCEEEEEEETTEEEEEECTTCTTCEE
T ss_pred ECCCCCCcccEEec------------------------------------CCCCceEEEEeccCCEEEEEECCCCCCCEE
Confidence 87665 2022221 1111122222333445555554 3459
Q ss_pred EEEECCCCCCCccccceeeeccccCeEEEEEe-CCEEEEEeCCCeEEEEECC-CCceEEEecCC-CCCcEEEEEc--CC-
Q 014003 294 LVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLD-TLEAVMTLNGH-TDAPMSLLCW--DQ- 367 (432)
Q Consensus 294 ~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~vwd~~-~~~~~~~~~~~-~~~v~~~~~~--~~- 367 (432)
.+||+.++. . .....+..+...+..++++ +.++++...|+..+||.+. +++....+..+ ...+..+.++ ++
T Consensus 344 ~~~d~~~~~-~--~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~ 420 (741)
T 1yr2_A 344 VRVDLSGST-P--RFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRH 420 (741)
T ss_dssp EEEECSSSS-C--EEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSC
T ss_pred EEEeCCCCc-c--ccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCE
Confidence 999987642 1 1222334444456677776 5667788889987777554 46666777643 5566777765 44
Q ss_pred EEEEEe---CCCcEEEEEcCCCC
Q 014003 368 YLLSCS---LDNTIKVWIMTEEG 387 (432)
Q Consensus 368 ~l~s~s---~dg~i~iwd~~~~~ 387 (432)
++++.+ ..++|++||+.+++
T Consensus 421 l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 421 AYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEcCCCCCCEEEEEECCCCc
Confidence 444433 34789999997764
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.16 E-value=1.2e-08 Score=96.04 Aligned_cols=279 Identities=10% Similarity=-0.067 Sum_probs=173.8
Q ss_pred CCCCCCCCceecCCCCC-----CCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeeccCceeeCC
Q 014003 94 PSYNCPKNNVRVSSGSE-----EGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLSGNCVKGD 168 (432)
Q Consensus 94 ~~~~~s~~g~~las~~~-----Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 168 (432)
.....+|+++.++.... ++.+.+-|..+.... .++-....+. +.+.+.+..+..+.
T Consensus 36 ~~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~------------------~~I~vG~~P~-va~spDG~~lyVan 96 (386)
T 3sjl_D 36 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI------------------GMIDGGFLPN-PVVADDGSFIAHAS 96 (386)
T ss_dssp BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE------------------EEEEECSSCE-EEECTTSSCEEEEE
T ss_pred eeeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE------------------EEEECCCCCc-EEECCCCCEEEEEc
Confidence 34556788887665543 567777765443320 0111112222 55566666444332
Q ss_pred ----------CCCeEEEEeCCCCcEEEEEEecc-------cCcEEEEEecCCCCEEEEEeC--CCcEEEEeCCCCceeEE
Q 014003 169 ----------ECRFWHSWFCGEGFTMLAKLEGH-------KKAVSGIALPLRSDKLYSGSR--DGTVQLWDCHTGQSASV 229 (432)
Q Consensus 169 ----------~d~~i~vw~~~~~~~~~~~l~~H-------~~~V~~l~~~~~~~~l~s~s~--Dg~v~iWd~~~~~~~~~ 229 (432)
.++.|.+||..+. +.+.++.-. ...-..++|+|||++|+.+.. +++|.++|+.+++.+.+
T Consensus 97 ~~~~r~~~G~~~~~VsviD~~t~-~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~t 175 (386)
T 3sjl_D 97 TVFSRIARGERTDYVEVFDPVTL-LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM 175 (386)
T ss_dssp EEEEETTEEEEEEEEEEECTTTC-CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred ccccccccCCCCCEEEEEECCCC-eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 4678999999887 566665421 123456899999999998864 68999999999999999
Q ss_pred EeCCCceeeEEE--CCCEEEEEcCCeEEEEEccC-CceEeec-CC----cCCEE-EEEEc-CC-EEEEEECCCcEEEEEC
Q 014003 230 INLGAEVGSLIC--EGPWVFVGMPNVVKAWHIES-SAEFSLD-GP----VGEVY-SMVVA-NE-MLFAGAQDGNILVWKG 298 (432)
Q Consensus 230 ~~~~~~~~~~~~--~~~~l~~~~~~~i~vwd~~~-~~~~~~~-~~----~~~v~-~l~~~-~~-~l~~g~~dg~i~~wd~ 298 (432)
+..... ..+.+ ...+++.+.||.+.+.++.. ++..... .. ...+. ...+. ++ .++..+.+|.|++.|+
T Consensus 176 I~v~g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~ 254 (386)
T 3sjl_D 176 LDVPDC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDL 254 (386)
T ss_dssp EECCSE-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEEC
T ss_pred EECCCc-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEEC
Confidence 987653 22333 23455677889888888876 4432111 11 11221 12332 34 5666777999999999
Q ss_pred CCCCCCccccceeee---------c-cccCeEEEEEe--CCEEEEEeC----------CCeEEEEECCCCceEEEecCCC
Q 014003 299 IPNTQNPFQLAALLK---------G-HTRPVTCLAVG--GKRLYSGSM----------DNTIRVWDLDTLEAVMTLNGHT 356 (432)
Q Consensus 299 ~~~~~~~~~~~~~~~---------~-h~~~v~~l~~~--~~~l~sgs~----------dg~I~vwd~~~~~~~~~~~~~~ 356 (432)
...... ....+. + .......++++ ++.++.... .+.|.++|+.+++.+.++...
T Consensus 255 ~~~~~~---v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg- 330 (386)
T 3sjl_D 255 SSGDAK---FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG- 330 (386)
T ss_dssp TTSSCE---ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-
T ss_pred CCCcce---eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-
Confidence 766421 111111 0 01122234454 777777643 257999999999999988633
Q ss_pred CCcEEEEEc--CC-EEEEE-eCCCcEEEEEcCCCCceeEEeeccC
Q 014003 357 DAPMSLLCW--DQ-YLLSC-SLDNTIKVWIMTEEGNLEVAYTHNE 397 (432)
Q Consensus 357 ~~v~~~~~~--~~-~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~ 397 (432)
..+.++.++ ++ +|++. ..++.|.++|..+.+.+..+.....
T Consensus 331 ~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~ 375 (386)
T 3sjl_D 331 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH 375 (386)
T ss_dssp EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCC
Confidence 245667766 54 66665 4589999999999988777765433
No 208
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.14 E-value=1.3e-08 Score=104.14 Aligned_cols=258 Identities=14% Similarity=0.107 Sum_probs=164.7
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCc-----------EEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKA-----------VSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV 229 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~-----------V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~ 229 (432)
.+.+..++.++.|..+|..++ +.+..+...... ...+++ ++..|+.++.|+.|..+|..+|+.+..
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTG-NRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTT-EEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCC-cEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 445666666788999999888 666666543210 112333 467899999999999999999999998
Q ss_pred EeCC-C-----cee--eEEECCCEEEEEc------CCeEEEEEccCCceEe-ecC--Cc--------------------C
Q 014003 230 INLG-A-----EVG--SLICEGPWVFVGM------PNVVKAWHIESSAEFS-LDG--PV--------------------G 272 (432)
Q Consensus 230 ~~~~-~-----~~~--~~~~~~~~l~~~~------~~~i~vwd~~~~~~~~-~~~--~~--------------------~ 272 (432)
+... . .+. .+..++.+++.+. ++.|..+|.++++..- ... .. +
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred ecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 8865 2 111 1223444444433 6899999999998652 211 11 0
Q ss_pred ----------CEEEEEEcCC--EEEEEECCC-------------------cEEEEECCCCCCCccccceeee--cc----
Q 014003 273 ----------EVYSMVVANE--MLFAGAQDG-------------------NILVWKGIPNTQNPFQLAALLK--GH---- 315 (432)
Q Consensus 273 ----------~v~~l~~~~~--~l~~g~~dg-------------------~i~~wd~~~~~~~~~~~~~~~~--~h---- 315 (432)
....+.++++ ++++++.++ .|..+|..+++. +-.++ .|
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~-----~W~~~~~~~d~wd 308 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY-----KWHYQETPGDNWD 308 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE-----EEEEESSTTCCSC
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE-----EEEEecCCCcccc
Confidence 0123556554 777776664 599999998863 22222 12
Q ss_pred ----ccCe-EEEEEeC---CEEEEEeCCCeEEEEECCCCceEEEecCCCCC-----------c-----------------
Q 014003 316 ----TRPV-TCLAVGG---KRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA-----------P----------------- 359 (432)
Q Consensus 316 ----~~~v-~~l~~~~---~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~-----------v----------------- 359 (432)
..++ ..+..+| ..++.++.+|.++++|.++|+++..+...... +
T Consensus 309 ~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 309 YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 1122 1223346 68999999999999999999998776522110 0
Q ss_pred -------EEEEEc--CCEEEEEeC-------------------------------------------CCcEEEEEcCCCC
Q 014003 360 -------MSLLCW--DQYLLSCSL-------------------------------------------DNTIKVWIMTEEG 387 (432)
Q Consensus 360 -------~~~~~~--~~~l~s~s~-------------------------------------------dg~i~iwd~~~~~ 387 (432)
..++++ ..++++... .|.|..||+.+++
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 023444 456665433 2789999999988
Q ss_pred ceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 388 NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
.+....... ......+ ..++. +++.++.||.+++||++|
T Consensus 469 ~~W~~~~~~-~~~~g~~----~~~g~-~v~~g~~dg~l~a~D~~t 507 (677)
T 1kb0_A 469 AAWSVEHVS-PWNGGTL----TTAGN-VVFQGTADGRLVAYHAAT 507 (677)
T ss_dssp EEEEEEESS-SCCCCEE----EETTT-EEEEECTTSEEEEEETTT
T ss_pred EEeecCCCC-CCcCcce----EeCCC-EEEEECCCCcEEEEECCC
Confidence 776665432 2222222 34666 677789999999999875
No 209
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.13 E-value=1.1e-08 Score=96.28 Aligned_cols=245 Identities=10% Similarity=-0.000 Sum_probs=157.0
Q ss_pred eEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEe----------CCCcEEEEeCCCCceeEEEeCC--------
Q 014003 172 FWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGS----------RDGTVQLWDCHTGQSASVINLG-------- 233 (432)
Q Consensus 172 ~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s----------~Dg~v~iWd~~~~~~~~~~~~~-------- 233 (432)
.|.++|..+. +.+.++..-..+ .++++||+++++.+. .+++|.+||+.+++.+..+..+
T Consensus 47 ~vsvID~~t~-~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCG-VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTT-EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCC-eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 7889999888 778888755566 799999999999886 3789999999999999998754
Q ss_pred --CceeeEEECCCEEEEEc---CCeEEE--EEccCCceEeecCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCC-----
Q 014003 234 --AEVGSLICEGPWVFVGM---PNVVKA--WHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIP----- 300 (432)
Q Consensus 234 --~~~~~~~~~~~~l~~~~---~~~i~v--wd~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~----- 300 (432)
.....+.+++++++++. .+.+.+ +|+.+-..+...+ . ..+...+. .+++.+.||.+.+.|+.+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~---~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSAS---C-FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSS---C-CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCC---c-eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 22344557888888763 467888 8887711111111 1 11223333 566777899999999876
Q ss_pred CCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCc--eEEEecCC------------CCCcEEEEEcC
Q 014003 301 NTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLE--AVMTLNGH------------TDAPMSLLCWD 366 (432)
Q Consensus 301 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~--~~~~~~~~------------~~~v~~~~~~~ 366 (432)
++.. ......+.....+. . ..++..++..+. +.|.+.|+.+.. .+..+.-. ......+...+
T Consensus 200 ~~v~-~~~t~~i~vg~~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg 275 (368)
T 1mda_H 200 GIVG-AQCTGAQNCSSQAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT 275 (368)
T ss_dssp EECC-CCSCTTSCBCSCCE-E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT
T ss_pred CeEE-EEeeeeeeCCCCcc-c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCC
Confidence 2210 00000111122333 2 223566655566 999999987543 23332211 11123344446
Q ss_pred CEEEEEeC---------CCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEe-CCCeEEEeeCCC
Q 014003 367 QYLLSCSL---------DNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC-NDDSVHLYELPS 432 (432)
Q Consensus 367 ~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~-~Dg~I~iwdl~s 432 (432)
+.++.+.. ++.+.++|+.+.+.+..+.... ....+.+ +|||+.++++.. .++.|.++|+.|
T Consensus 276 ~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~----s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIA----AQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEE----CCSSSCEEEEEETTTTEEEEEESSS
T ss_pred CEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEE----CCCCCEEEEEccCCCCeEEEEECCC
Confidence 66665432 2356699999998877665443 2344455 899987788887 699999999875
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.12 E-value=1.1e-07 Score=91.18 Aligned_cols=228 Identities=12% Similarity=0.039 Sum_probs=149.8
Q ss_pred CcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCce-eeEEECCCEEEEE-cCC--eEEEEEccCCceEeec
Q 014003 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV-GSLICEGPWVFVG-MPN--VVKAWHIESSAEFSLD 268 (432)
Q Consensus 193 ~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~-~~~--~i~vwd~~~~~~~~~~ 268 (432)
.....|+|+++++++++...++.|++||.++++........... ..+..++..++++ .++ .|..++...+......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~ 210 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI 210 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence 46889999999998888888899999999988777666543322 3334567766665 333 7889998766542221
Q ss_pred ----C-CcCCEEEEEEcC-C-EEEEEECCCcEEEEECCCCCCCcccccee--eeccccCe--EEEEEe--CCE-EEEEeC
Q 014003 269 ----G-PVGEVYSMVVAN-E-MLFAGAQDGNILVWKGIPNTQNPFQLAAL--LKGHTRPV--TCLAVG--GKR-LYSGSM 334 (432)
Q Consensus 269 ----~-~~~~v~~l~~~~-~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~--~~~h~~~v--~~l~~~--~~~-l~sgs~ 334 (432)
. ....+.++++++ + .|+++..++.|+.||..++.. ..... ..++...- ..++++ +.. +++-..
T Consensus 211 g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~---~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 211 GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV---TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE---EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE---EEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 2 445677889998 4 666677788999999886642 11110 11122211 278887 344 455556
Q ss_pred CCeEEEEECCCCceEEEecCCC---------------CCcEEEEEc--CCEEEEEe-CCCcEEEEEcCCCCceeEEeec-
Q 014003 335 DNTIRVWDLDTLEAVMTLNGHT---------------DAPMSLLCW--DQYLLSCS-LDNTIKVWIMTEEGNLEVAYTH- 395 (432)
Q Consensus 335 dg~I~vwd~~~~~~~~~~~~~~---------------~~v~~~~~~--~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~- 395 (432)
++.|+.||.... +..+.++. .....++++ ++++++-+ .++.|+.|++.++. +..+.++
T Consensus 288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~ 364 (409)
T 3hrp_A 288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQV 364 (409)
T ss_dssp TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-EEEEEECT
T ss_pred CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCC
Confidence 789999997643 33333332 235677777 67777777 78999999976654 3444433
Q ss_pred --------------cCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 396 --------------NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 396 --------------~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
-.....+++ +|+|. ++++-..++.|+.++++
T Consensus 365 ~~~g~~~g~~~~~~~~~P~giav----d~~g~-lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 365 DVASQIDGTPLEATFNYPYDICY----DGEGG-YWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp TCBSCCCBSTTTCCBSSEEEEEE----CSSSE-EEEEESTTCEEEEEEEC
T ss_pred CCCCcCCCChhceEeCCceEEEE----cCCCC-EEEEECCCCeEEEEEeC
Confidence 112334444 88977 88888889999988764
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.11 E-value=1.4e-07 Score=86.23 Aligned_cols=225 Identities=14% Similarity=0.144 Sum_probs=142.3
Q ss_pred EecccCcEEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--ECCCEEEEEcCCeEEEEEccCCce
Q 014003 188 LEGHKKAVSGIALPLR-SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVFVGMPNVVKAWHIESSAE 264 (432)
Q Consensus 188 l~~H~~~V~~l~~~~~-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~vwd~~~~~~ 264 (432)
+..+..--.+..|+++ +.++++...++.|..||..+++. ..+.....+..+. .++.++++ .++.|.+||.++++.
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~-~~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVAT-IGTKFCALNWKEQSA 85 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEE-ETTEEEEEETTTTEE
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEE-ECCeEEEEECCCCcE
Confidence 4445556678899885 45666777789999999998765 4455566666655 46775555 477899999988765
Q ss_pred EeecC-----CcCCEEEEEEcCC-EEEEEEC----------CCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--C
Q 014003 265 FSLDG-----PVGEVYSMVVANE-MLFAGAQ----------DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--G 326 (432)
Q Consensus 265 ~~~~~-----~~~~v~~l~~~~~-~l~~g~~----------dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~ 326 (432)
..+.. ....+..+.++++ .+.+++. ...-.+|.+..... ...+..+......++|+ +
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-----~~~~~~~~~~pngi~~spdg 160 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-----VKKYFDQVDISNGLDWSLDH 160 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-----EEEEEEEESBEEEEEECTTS
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-----EEEEeeccccccceEEcCCC
Confidence 43221 2345788999988 4444431 12234444433211 11122233345678886 6
Q ss_pred CEEE-EEeCCCeEEEEEC--CCCce-----EEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeecc
Q 014003 327 KRLY-SGSMDNTIRVWDL--DTLEA-----VMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN 396 (432)
Q Consensus 327 ~~l~-sgs~dg~I~vwd~--~~~~~-----~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 396 (432)
+.|+ +.+.++.|.+||+ .+++. ...+..+......++++ +++.++....+.|..||..+++.+..+....
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence 6664 5556789999997 45543 22333334456677776 6777777778889999998888777776655
Q ss_pred CCcceEEEeeeeCCCCCcEEEEEeCC
Q 014003 397 EDHGVLALGGLNDPDGNPVLICSCND 422 (432)
Q Consensus 397 ~~~~~~~~~~~~sp~g~~~l~sg~~D 422 (432)
..+..++|. .|+++.++++...+
T Consensus 241 ~~~t~~~f~---g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 241 DKTTSCCFG---GKNYSEMYVTCARD 263 (297)
T ss_dssp SBEEEEEEE---SGGGCEEEEEEBCT
T ss_pred CCceEEEEe---CCCCCEEEEEcCCc
Confidence 555555552 27888666666543
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.10 E-value=3.7e-08 Score=101.31 Aligned_cols=234 Identities=13% Similarity=0.075 Sum_probs=142.3
Q ss_pred cccCcEEEEEecCCCCEEEE-----EeCCCcEEEEeCCCCceeEEEeCC--CceeeEEECCCEEEEE-cC----------
Q 014003 190 GHKKAVSGIALPLRSDKLYS-----GSRDGTVQLWDCHTGQSASVINLG--AEVGSLICEGPWVFVG-MP---------- 251 (432)
Q Consensus 190 ~H~~~V~~l~~~~~~~~l~s-----~s~Dg~v~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~-~~---------- 251 (432)
+|...+.+++|||||++||- |+.+.+|++||+++++.+...... ....... +++.++.+ .+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 46667899999999998883 333467999999999866542211 1233445 77766544 44
Q ss_pred ---CeEEEEEccCCce---EeecC---CcCCEEEEEEcCC--EE-EEEEC---CCcEEEEECCCCCCCccccceeeeccc
Q 014003 252 ---NVVKAWHIESSAE---FSLDG---PVGEVYSMVVANE--ML-FAGAQ---DGNILVWKGIPNTQNPFQLAALLKGHT 316 (432)
Q Consensus 252 ---~~i~vwd~~~~~~---~~~~~---~~~~v~~l~~~~~--~l-~~g~~---dg~i~~wd~~~~~~~~~~~~~~~~~h~ 316 (432)
..|++|++.+... ..... +.....++.++++ +| ++... ++.|+++|+.++.. ....+..+.
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~----~~~~l~~~~ 280 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA----PLLTVQGDL 280 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC----CCEEEECSS
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC----ceEEEeCCC
Confidence 2499999987652 22222 2345778889988 44 44332 35899999877642 133444455
Q ss_pred cCeEE-EEEeCCEEEEEe-CC---CeEEEEECCCCce--EEEecCCCCCcEEEEEcCCEEEEEeCCC---cEEEEEcCCC
Q 014003 317 RPVTC-LAVGGKRLYSGS-MD---NTIRVWDLDTLEA--VMTLNGHTDAPMSLLCWDQYLLSCSLDN---TIKVWIMTEE 386 (432)
Q Consensus 317 ~~v~~-l~~~~~~l~sgs-~d---g~I~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~l~s~s~dg---~i~iwd~~~~ 386 (432)
..... +..++..|+..+ .+ +.|.++|+.++.. ...+..|...+..++..+++|+....++ .|++||+...
T Consensus 281 ~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 281 DADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred CceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 54444 333466555444 33 6899999988754 3456666665556666677776665544 6889988744
Q ss_pred CceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCC---CeEEEeeCCC
Q 014003 387 GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND---DSVHLYELPS 432 (432)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~D---g~I~iwdl~s 432 (432)
. ...+.. ... . ......++|+++.++++.+.. +.|..||+.+
T Consensus 361 ~-~~~l~~-p~~-~-~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 361 R-VREVAL-PGL-G-SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp E-EEEECC-SSS-S-EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred e-eEEeec-CCC-c-eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence 3 222221 111 1 122333467887566655432 7888888753
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.08 E-value=6.5e-08 Score=88.56 Aligned_cols=199 Identities=8% Similarity=-0.045 Sum_probs=130.6
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC-----cee
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA-----EVG 237 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~-----~~~ 237 (432)
.+++....+.|+.|+..++.. ..+ .+...+.+++++++|+++++ . ++.|.+||.++++......... ...
T Consensus 27 l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~ 101 (297)
T 3g4e_A 27 LLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFN 101 (297)
T ss_dssp EEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEE
T ss_pred EEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCC
Confidence 456666788999999987633 222 24578999999999996555 4 5679999999887655444321 123
Q ss_pred eEE--ECCCEEEEEc----------CCeEEEEEccC-CceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECC--
Q 014003 238 SLI--CEGPWVFVGM----------PNVVKAWHIES-SAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGI-- 299 (432)
Q Consensus 238 ~~~--~~~~~l~~~~----------~~~i~vwd~~~-~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~-- 299 (432)
.+. +++.+.++.. .....+|.+.. +..............++++++ ++++.+.++.|.+||+.
T Consensus 102 di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~ 181 (297)
T 3g4e_A 102 DGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ 181 (297)
T ss_dssp EEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT
T ss_pred CEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCC
Confidence 333 4677666542 12345555443 333333333445678999987 44556668899999974
Q ss_pred CCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcC
Q 014003 300 PNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD 366 (432)
Q Consensus 300 ~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 366 (432)
++.....+....+..+......++++ |++.++...++.|.+||.++++.+..+..+...+++++|.+
T Consensus 182 ~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g 250 (297)
T 3g4e_A 182 TGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGG 250 (297)
T ss_dssp TCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEES
T ss_pred CCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeC
Confidence 33211112222333334456788887 77777777788999999999999999987777889999873
No 214
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.07 E-value=2.8e-08 Score=90.83 Aligned_cols=196 Identities=13% Similarity=0.092 Sum_probs=126.7
Q ss_pred EEEEecccCcEEEEEecCCCC-EEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCc
Q 014003 185 LAKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSA 263 (432)
Q Consensus 185 ~~~l~~H~~~V~~l~~~~~~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~ 263 (432)
+..+..+.....+++|+|+++ +++++..++.|..||..++ ...+
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~--------------------------------- 64 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE--------------------------------- 64 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE---------------------------------
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE---------------------------------
Confidence 344556677789999999998 7888888999999999876 3332
Q ss_pred eEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccce-eeec-cccCeEEEEEe--CCEEEE----Ee
Q 014003 264 EFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAA-LLKG-HTRPVTCLAVG--GKRLYS----GS 333 (432)
Q Consensus 264 ~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~-~~~~-h~~~v~~l~~~--~~~l~s----gs 333 (432)
..+...+.+++++++ ++++...++.|.+||..+++. .... .... ....+..++++ |+++++ |+
T Consensus 65 ----~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~---~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~ 137 (296)
T 3e5z_A 65 ----MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW---ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGI 137 (296)
T ss_dssp ----ESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE---EEEECEETTEECCCCCCEEECTTSCEEEEECSHHH
T ss_pred ----ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE---EEEeeccCCCCCCCCCCEEECCCCCEEEECCcccc
Confidence 123456788888887 444444568999999876642 1111 1111 11245567786 777776 33
Q ss_pred -------------CCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCce----eEEee
Q 014003 334 -------------MDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNL----EVAYT 394 (432)
Q Consensus 334 -------------~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~ 394 (432)
..+.|..+|.. ++. ..+..+......++++ ++.+++.+.++.|.+|++.....+ ..+..
T Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 215 (296)
T 3e5z_A 138 DKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV 215 (296)
T ss_dssp HCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC
T ss_pred ccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC
Confidence 13467777765 443 4444555667788887 677777788899999999733333 22211
Q ss_pred ccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 395 HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 395 ~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+......+++ +++|+ ++++. ++.|.+||..
T Consensus 216 ~~~~p~~i~~----d~~G~-l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 216 EPGKTDGLRV----DAGGL-IWASA--GDGVHVLTPD 245 (296)
T ss_dssp SSSCCCSEEE----BTTSC-EEEEE--TTEEEEECTT
T ss_pred CCCCCCeEEE----CCCCC-EEEEc--CCeEEEECCC
Confidence 2223344555 89998 55555 7889999864
No 215
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.06 E-value=6.1e-07 Score=84.89 Aligned_cols=231 Identities=8% Similarity=-0.089 Sum_probs=148.2
Q ss_pred ceEEeeccCceeeCC----------CCCeEEEEeCCCCcEEEEEEecc-------cCcEEEEEecCCCCEEEEEeC--CC
Q 014003 154 NVCYHWLSGNCVKGD----------ECRFWHSWFCGEGFTMLAKLEGH-------KKAVSGIALPLRSDKLYSGSR--DG 214 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~----------~d~~i~vw~~~~~~~~~~~l~~H-------~~~V~~l~~~~~~~~l~s~s~--Dg 214 (432)
.+.+++.+..+.... .++.|.+||..+. +.+.++.-- ...-..++|+|||++|+.+.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~-~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF-LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC-cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCC
Confidence 566666666554443 4688999999865 555554321 123458899999999998874 57
Q ss_pred cEEEEeCCCCceeEE-EeCCCceeeEEECC--CEEEEEcCCeEEEEEccCCceEeec------CCcCCE-EEEEEcC--C
Q 014003 215 TVQLWDCHTGQSASV-INLGAEVGSLICEG--PWVFVGMPNVVKAWHIESSAEFSLD------GPVGEV-YSMVVAN--E 282 (432)
Q Consensus 215 ~v~iWd~~~~~~~~~-~~~~~~~~~~~~~~--~~l~~~~~~~i~vwd~~~~~~~~~~------~~~~~v-~~l~~~~--~ 282 (432)
+|.++| .+++.+.. +.....+ .+.+.+ .+++.+.++.+.+++. +++..... ....++ ....+.+ .
T Consensus 149 ~v~viD-~t~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 225 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSPTCY-HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG 225 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCCceE-EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCC
Confidence 899999 99998888 7665442 233333 3445568899999999 77655211 111111 1122222 3
Q ss_pred EEEEEECCCcEEEEECCCCCCCccccceeeec----------cccCeEEEEEe--CCEEEEEeC----------CCeEEE
Q 014003 283 MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG----------HTRPVTCLAVG--GKRLYSGSM----------DNTIRV 340 (432)
Q Consensus 283 ~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~----------h~~~v~~l~~~--~~~l~sgs~----------dg~I~v 340 (432)
.++..+.++.+.+.|+..... +....+.. .......+.++ ++.++++.. ++.|.+
T Consensus 226 ~~~~~~~~~~v~vid~~~~~~---~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V 302 (373)
T 2mad_H 226 RIVWPVYSGKILQADISAAGA---TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred EEEEEcCCceEEEEeccCCcc---eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence 444444788999999876532 11122211 01122234554 677777543 358999
Q ss_pred EECCCCceEEEecCCCCCcEEEEEc--CC-EEEEEe-CCCcEEEEEcCCCCceeEE
Q 014003 341 WDLDTLEAVMTLNGHTDAPMSLLCW--DQ-YLLSCS-LDNTIKVWIMTEEGNLEVA 392 (432)
Q Consensus 341 wd~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~s-~dg~i~iwd~~~~~~~~~~ 392 (432)
+|+.+++.+.++... .....+.++ ++ +++++. .++.|.++|+.+.+.+..+
T Consensus 303 ID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 303 VTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 999999999998633 346777777 66 777777 5899999999998887663
No 216
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.04 E-value=7.3e-08 Score=98.77 Aligned_cols=258 Identities=17% Similarity=0.181 Sum_probs=163.5
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCc----------E-EEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKA----------V-SGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV 229 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~----------V-~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~ 229 (432)
.+.+..++.++.|..+|..++ +.+..+..+... + ..+++ .+..++.++.|+.|..+|.++|+.+-.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDG-RLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTC-CEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCC-ceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeee
Confidence 456666677888999999888 556666543221 1 11222 366899999999999999999999988
Q ss_pred EeCC-C-----ce--eeEEECCCEEEEE------cCCeEEEEEccCCceE-eecC-C---c-------------------
Q 014003 230 INLG-A-----EV--GSLICEGPWVFVG------MPNVVKAWHIESSAEF-SLDG-P---V------------------- 271 (432)
Q Consensus 230 ~~~~-~-----~~--~~~~~~~~~l~~~------~~~~i~vwd~~~~~~~-~~~~-~---~------------------- 271 (432)
+... . .+ ..+..++.+++.. .++.|..+|.++++.. .... . .
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred ecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 8764 1 11 1223355444433 2689999999999865 2221 0 0
Q ss_pred --------CCEEEEEEcCC--EEEEEECCCc-------------------EEEEECCCCCCCccccceeeec--cc----
Q 014003 272 --------GEVYSMVVANE--MLFAGAQDGN-------------------ILVWKGIPNTQNPFQLAALLKG--HT---- 316 (432)
Q Consensus 272 --------~~v~~l~~~~~--~l~~g~~dg~-------------------i~~wd~~~~~~~~~~~~~~~~~--h~---- 316 (432)
.....+.++++ ++++++.++. |..+|..+++. +-.++. |.
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~-----~W~~~~~~~d~wd~ 301 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY-----VWHYQTTPGDAWDY 301 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE-----EEEEESSTTCCSCC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce-----eEeeecCCcccccc
Confidence 00114566654 8888887763 99999999863 222221 21
Q ss_pred ---cCeE--EEEEeCC---EEEEEeCCCeEEEEECCCCceEEEecCCCC-C-----------------------------
Q 014003 317 ---RPVT--CLAVGGK---RLYSGSMDNTIRVWDLDTLEAVMTLNGHTD-A----------------------------- 358 (432)
Q Consensus 317 ---~~v~--~l~~~~~---~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~-~----------------------------- 358 (432)
.+.. .+.++|+ .++.++.+|.++++|.++|+++........ .
T Consensus 302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~ 381 (689)
T 1yiq_A 302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLV 381 (689)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEE
T ss_pred cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEe
Confidence 1221 2334454 789999999999999999999854321110 0
Q ss_pred ---------cEEEEEc--CCEEEEEeC---------------------------------------------CCcEEEEE
Q 014003 359 ---------PMSLLCW--DQYLLSCSL---------------------------------------------DNTIKVWI 382 (432)
Q Consensus 359 ---------v~~~~~~--~~~l~s~s~---------------------------------------------dg~i~iwd 382 (432)
-..++++ ..++++... +|.|..||
T Consensus 382 ~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D 461 (689)
T 1yiq_A 382 TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWD 461 (689)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEE
T ss_pred CCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEE
Confidence 0012333 345555421 47899999
Q ss_pred cCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 383 MTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
+.+++.+.....+...... .+ ...+. +++.|+.||.|+.||.+|
T Consensus 462 ~~tG~~~W~~~~~~~~~~g-~~----~tagg-lvf~gt~dg~l~a~D~~t 505 (689)
T 1yiq_A 462 PVKQQAAWEVPYVTIFNGG-TL----STAGN-LVFEGSADGRVIAYAADT 505 (689)
T ss_dssp TTTTEEEEEEEESSSCCCC-EE----EETTT-EEEEECTTSEEEEEETTT
T ss_pred CCCCCeEeEccCCCCccCc-cc----eECCC-EEEEECCCCcEEEEECCC
Confidence 9999887776554432221 22 34566 788899999999999875
No 217
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.04 E-value=1.5e-08 Score=93.96 Aligned_cols=210 Identities=12% Similarity=0.047 Sum_probs=140.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeEEEeCCCce-eeEE--ECCCEEEEEcCCeEEEEEccCCceE-eecCCcCCEEEEEE
Q 014003 204 SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV-GSLI--CEGPWVFVGMPNVVKAWHIESSAEF-SLDGPVGEVYSMVV 279 (432)
Q Consensus 204 ~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~ 279 (432)
+..|+.++.++.|..+|.. ++........... ..+. .++.+.+++.++.+..+|.. ++.. ........+.++..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI 184 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence 5668888889999999998 7777666654332 2222 25666666677999999998 5543 44444455666777
Q ss_pred cCC-EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe-CCEEEEEeCCCeEEEEECCCCceEEEecCCCC
Q 014003 280 ANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD 357 (432)
Q Consensus 280 ~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~ 357 (432)
.++ .+.+++ +.|..+| .++. ...........+.++..+ ...+..++.++.|..+|. +++.+..+.....
T Consensus 185 d~~g~l~v~t--~~l~~~d-~~g~-----~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~ 255 (330)
T 3hxj_A 185 GKDGTIYFGS--DKVYAIN-PDGT-----EKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKR 255 (330)
T ss_dssp CTTCCEEEES--SSEEEEC-TTSC-----EEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSC
T ss_pred cCCCEEEEEe--CEEEEEC-CCCc-----EEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCC
Confidence 555 666666 8899999 5443 233333344567777777 447888888899999984 6777777665544
Q ss_pred CcEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 358 APMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 358 ~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.+.++... +..|..++.+|.|..+|. +++...........+..+.. +++|. |..|+.+|.+++...+
T Consensus 256 ~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~----d~~g~--l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 256 IESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVI----DENGT--IYFGTRNGKFYALFNL 323 (330)
T ss_dssp CCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEE----CTTCC--EEEECTTSCEEEEEC-
T ss_pred ccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEE----cCCCE--EEEEcCCCeEEEEecc
Confidence 44455555 678888999999999996 55555444433333333333 67777 5668899999987653
No 218
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.02 E-value=3.1e-10 Score=107.61 Aligned_cols=189 Identities=8% Similarity=0.019 Sum_probs=109.7
Q ss_pred ccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCc--e-
Q 014003 160 LSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAE--V- 236 (432)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~--~- 236 (432)
..+.++.++.|+.|+.||..++ +.+..+.. +.+.+..+..++..+++++.||.|..||.++|+.+........ +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG-~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG-SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC-CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCC-CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 3457788889999999999988 56666665 5555555666787888889999999999999988766654311 1
Q ss_pred -eeEE-ECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeec
Q 014003 237 -GSLI-CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKG 314 (432)
Q Consensus 237 -~~~~-~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~ 314 (432)
..+. .++.+++++.++.+..||.++++..........+ ......+.+++++.|+.|+.||..+++. +..+..
T Consensus 85 ~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~-~~~p~~~~v~~~~~dg~v~a~d~~tG~~-----~W~~~~ 158 (369)
T 2hz6_A 85 ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFAD-SLSPSTSLLYLGRTEYTITMYDTKTREL-----RWNATY 158 (369)
T ss_dssp TCSCC-----CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSSC-----CCEEEE
T ss_pred cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCcc-cccccCCEEEEEecCCEEEEEECCCCCE-----EEeEec
Confidence 1111 3444555667899999999998865322222211 1122344888899999999999998764 222221
Q ss_pred cccCeEEEEEeC-----CEEEEEeCCCeEEEEECCCCceEEEecCCCCCcE
Q 014003 315 HTRPVTCLAVGG-----KRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPM 360 (432)
Q Consensus 315 h~~~v~~l~~~~-----~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~ 360 (432)
+. .....+++ ..+++++.||.|+.||.++++.+.++.. ..++.
T Consensus 159 ~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~ 206 (369)
T 2hz6_A 159 FD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVV 206 (369)
T ss_dssp EE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEE
T ss_pred cc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceE
Confidence 11 11122332 6788899999999999999999888773 33443
No 219
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.02 E-value=1.2e-07 Score=97.23 Aligned_cols=256 Identities=13% Similarity=0.066 Sum_probs=156.6
Q ss_pred ccCceeeCCCCCeEEEEeCCCCcEEEEEEec--ccCcEEEEEecC---CCCEEEEEe------CCCcEEEEeCCCCceeE
Q 014003 160 LSGNCVKGDECRFWHSWFCGEGFTMLAKLEG--HKKAVSGIALPL---RSDKLYSGS------RDGTVQLWDCHTGQSAS 228 (432)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~--H~~~V~~l~~~~---~~~~l~s~s------~Dg~v~iWd~~~~~~~~ 228 (432)
....++.++.|+.|..+|..++ +.+..+.. +......+..+| ++ .++.++ .+|.|..||.++|+.+-
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG-~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTG-QRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTC-CEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEccCCEEEEEECCCC-CEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 3557788888999999999998 45555443 211111111122 44 444443 37899999999999988
Q ss_pred EEeCCC--c--------------------------------eeeEEECCCEEEEEc-CC-------------------eE
Q 014003 229 VINLGA--E--------------------------------VGSLICEGPWVFVGM-PN-------------------VV 254 (432)
Q Consensus 229 ~~~~~~--~--------------------------------~~~~~~~~~~l~~~~-~~-------------------~i 254 (432)
.+.... + ...+......++.+. ++ .|
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 776311 0 011223456666653 32 49
Q ss_pred EEEEccCCceEe-ecC--Cc-------CC--EEEEEEcCC---EEEEEECCCcEEEEECCCCCCCcccc------ceee-
Q 014003 255 KAWHIESSAEFS-LDG--PV-------GE--VYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQL------AALL- 312 (432)
Q Consensus 255 ~vwd~~~~~~~~-~~~--~~-------~~--v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~------~~~~- 312 (432)
..+|.++++..- ... +. .. +..+.+... .++.++.+|.++++|..+++...... ...+
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 999999998652 221 11 11 123334443 68889999999999998886410000 0000
Q ss_pred ----------------ecccc-----------CeEEEEEe--CCEEEEEeC-----------------------------
Q 014003 313 ----------------KGHTR-----------PVTCLAVG--GKRLYSGSM----------------------------- 334 (432)
Q Consensus 313 ----------------~~h~~-----------~v~~l~~~--~~~l~sgs~----------------------------- 334 (432)
..... .-..++++ ...+++.+.
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 00000 00124555 455555422
Q ss_pred ----------------CCeEEEEECCCCceEEEecCCCCCcE-EEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeeccC
Q 014003 335 ----------------DNTIRVWDLDTLEAVMTLNGHTDAPM-SLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE 397 (432)
Q Consensus 335 ----------------dg~I~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 397 (432)
+|.|+.||+.+++.+.++..+..... .+...+.+++.++.||.++.||.++++.+..+.....
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~ 517 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASG 517 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCC
Confidence 47899999999999998875543222 3444588999999999999999999999887775543
Q ss_pred Cc-ceEEEeeeeCCCCCcEEEEEeC
Q 014003 398 DH-GVLALGGLNDPDGNPVLICSCN 421 (432)
Q Consensus 398 ~~-~~~~~~~~~sp~g~~~l~sg~~ 421 (432)
.. .-+.+ ..+|+.++++.+.
T Consensus 518 ~~~~p~ty----~~~G~qyv~~~~G 538 (689)
T 1yiq_A 518 VMAAPVTY----SVDGEQYVTFMAG 538 (689)
T ss_dssp CCSCCEEE----EETTEEEEEEEEC
T ss_pred cccCceEE----EECCEEEEEEEec
Confidence 32 22333 5788877776543
No 220
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.02 E-value=4.1e-08 Score=101.03 Aligned_cols=241 Identities=9% Similarity=0.034 Sum_probs=140.4
Q ss_pred CCCCCCCCCCCCCCCceecC-----CCCCCCcccccccCCCCCCCCCCcccccCCCCCCCCCceeeeecCCCceEEeecc
Q 014003 87 SNHKKSPPSYNCPKNNVRVS-----SGSEEGTTHVQNRENPDRTVPNKSSLDCSTGSDDSGSKRTLERTTPKNVCYHWLS 161 (432)
Q Consensus 87 ~gh~~~v~~~~~s~~g~~la-----s~~~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (432)
++|...+.+++|||||++|| +|+++.+|+|||+.++..... .+.......+++. .+
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~------------------~~~~~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET------------------PLKDVKFSGISWL-GN 185 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE------------------EEEEEESCCCEEE-TT
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc------------------ccCCceeccEEEe-CC
Confidence 55777788889999999999 777778999999877653100 0111111233344 44
Q ss_pred CceeeCCCC-------------CeEEEEeCCCCc---EEEEEEec-ccCcEEEEEecCCCCEEEEEeC----CCcEEEEe
Q 014003 162 GNCVKGDEC-------------RFWHSWFCGEGF---TMLAKLEG-HKKAVSGIALPLRSDKLYSGSR----DGTVQLWD 220 (432)
Q Consensus 162 ~~~~~g~~d-------------~~i~vw~~~~~~---~~~~~l~~-H~~~V~~l~~~~~~~~l~s~s~----Dg~v~iWd 220 (432)
..++....+ ..|++|++.++. ..+..... |...+.++.|+|||++|+.... +..|.++|
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 265 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD 265 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence 445544444 359999997653 33443444 5666889999999998865432 24788888
Q ss_pred CCCCc-eeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEE-EEEcCC-EEEEEEC---CCcEE
Q 014003 221 CHTGQ-SASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYS-MVVANE-MLFAGAQ---DGNIL 294 (432)
Q Consensus 221 ~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~-l~~~~~-~l~~g~~---dg~i~ 294 (432)
+.++. ....+ ..+...... +....+ +++.... .+.|.
T Consensus 266 ~~~~~~~~~~l-------------------------------------~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~ 308 (693)
T 3iuj_A 266 LSQENAPLLTV-------------------------------------QGDLDADVSLVDNKGSTLYLLTNRDAPNRRLV 308 (693)
T ss_dssp TTSTTCCCEEE-------------------------------------ECSSSSCEEEEEEETTEEEEEECTTCTTCEEE
T ss_pred CCCCCCceEEE-------------------------------------eCCCCceEEEEeccCCEEEEEECCCCCCCEEE
Confidence 87653 12222 111222222 233344 3344433 36799
Q ss_pred EEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeC-CC--eEEEEECCCCceEEEec-CCCCCcEEEEEc--CCE
Q 014003 295 VWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSM-DN--TIRVWDLDTLEAVMTLN-GHTDAPMSLLCW--DQY 368 (432)
Q Consensus 295 ~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~-dg--~I~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~ 368 (432)
.+|+.++... ....+..|...+..++.+++.|+.... ++ .|++||+..+ ....+. .....+..+.++ ++.
T Consensus 309 ~~d~~~~~~~---~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~ 384 (693)
T 3iuj_A 309 TVDAANPGPA---HWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPA 384 (693)
T ss_dssp EEETTSCCGG---GCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSC
T ss_pred EEeCCCCCcc---ccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCE
Confidence 9998876421 123344454444456666877766655 44 7899998854 445543 233445555554 444
Q ss_pred EEEEeCC----CcEEEEEcCCCC
Q 014003 369 LLSCSLD----NTIKVWIMTEEG 387 (432)
Q Consensus 369 l~s~s~d----g~i~iwd~~~~~ 387 (432)
++....+ +++..||+.+++
T Consensus 385 l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 385 LYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEecCCCCCCEEEEEECCCCe
Confidence 4433333 789999987664
No 221
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.02 E-value=1.3e-06 Score=79.34 Aligned_cols=226 Identities=13% Similarity=0.086 Sum_probs=145.8
Q ss_pred cccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC---CceeeEE--ECCCEEEEEc-CCeEEEEEccCCc
Q 014003 190 GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG---AEVGSLI--CEGPWVFVGM-PNVVKAWHIESSA 263 (432)
Q Consensus 190 ~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~---~~~~~~~--~~~~~l~~~~-~~~i~vwd~~~~~ 263 (432)
.....+.++++.++|+..++...++.|.+||.. ++... +... .....+. .++.+.++.. ++.|..+|.. ++
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 445788999999999988888788999999988 65543 3322 2344444 3566666664 6789999988 55
Q ss_pred eEee--cCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCe
Q 014003 264 EFSL--DGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNT 337 (432)
Q Consensus 264 ~~~~--~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~ 337 (432)
.... ......+.+++++++ ++++...++.|..+|.. ++. . ...+......+..++++ ++..++...++.
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~---~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 168 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI---Y-EYDLPNKGSYPAFITLGSDNALWFTENQNNS 168 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE---E-EEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE---E-EccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence 4332 223467889999876 44444457899999976 431 1 11122234567888886 665555556789
Q ss_pred EEEEECCCCceEEE-ecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEe-eccCCcceEEEeeeeCCCCC
Q 014003 338 IRVWDLDTLEAVMT-LNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAY-THNEDHGVLALGGLNDPDGN 413 (432)
Q Consensus 338 I~vwd~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~sp~g~ 413 (432)
|..+|. +++.... ...+...+..+.++ +++.++....+.|.+||. +++...... ........++ .+++|+
T Consensus 169 i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~----~d~~g~ 242 (300)
T 2qc5_A 169 IGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAIT----AGKNSE 242 (300)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE----ECSTTC
T ss_pred EEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEE----ECCCCC
Confidence 999998 5555432 22344557778777 566666666778999998 333222211 1222233334 488988
Q ss_pred cEEEEEeCCCeEEEeeC
Q 014003 414 PVLICSCNDDSVHLYEL 430 (432)
Q Consensus 414 ~~l~sg~~Dg~I~iwdl 430 (432)
++++...++.|..||.
T Consensus 243 -l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 243 -IWFTEWGANQIGRITN 258 (300)
T ss_dssp -EEEEETTTTEEEEECT
T ss_pred -EEEeccCCCeEEEECC
Confidence 6666666788988875
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.00 E-value=6.4e-07 Score=83.10 Aligned_cols=214 Identities=11% Similarity=0.055 Sum_probs=132.9
Q ss_pred cEEEEEecCCC-CEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--ECCCEEEEEcCCeEEEEEccCCceEeecCC
Q 014003 194 AVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVFVGMPNVVKAWHIESSAEFSLDGP 270 (432)
Q Consensus 194 ~V~~l~~~~~~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~ 270 (432)
-..+.+|+|++ .++++...++.|..||.++++.. .+.....+.++. .++.++++. ...|.+||.++++...+...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~~~~ 127 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAEL 127 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECS
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEEeeC
Confidence 35677898874 55667767899999999877643 444455555554 577777665 45699999988875443221
Q ss_pred -----cCCEEEEEEcCC-EEEEEEC-------CCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEE-eC
Q 014003 271 -----VGEVYSMVVANE-MLFAGAQ-------DGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSG-SM 334 (432)
Q Consensus 271 -----~~~v~~l~~~~~-~l~~g~~-------dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sg-s~ 334 (432)
...+.++.++++ .+++++. .+.|..+| +++ ...+..+......++|+ ++.++.+ +.
T Consensus 128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~------~~~~~~~~~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK------VTKLFADISIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE------EEEEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc------EEEeeCCCcccCCeEEcCCCCEEEEEECC
Confidence 235788999988 4444442 24566666 332 11222233345678886 6666554 55
Q ss_pred CCeEEEEECC--CC-c-----eEEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEE
Q 014003 335 DNTIRVWDLD--TL-E-----AVMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLAL 404 (432)
Q Consensus 335 dg~I~vwd~~--~~-~-----~~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 404 (432)
++.|.+||+. ++ + ....+......+..+.++ +++.++...++.|.+||. +++.+..+......+..+++
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af 278 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAF 278 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEE
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEE
Confidence 7899999986 55 3 233333334445667766 566666666789999998 45555555444434444444
Q ss_pred eeeeC-CCCCcEEEEEeCC
Q 014003 405 GGLND-PDGNPVLICSCND 422 (432)
Q Consensus 405 ~~~~s-p~g~~~l~sg~~D 422 (432)
+ |+++.++++...+
T Consensus 279 ----~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 279 ----IGPDASRLLVTSARE 293 (326)
T ss_dssp ----ESTTSCEEEEEEBCT
T ss_pred ----ecCCCCEEEEEecCC
Confidence 5 8877555665554
No 223
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.00 E-value=2e-08 Score=94.74 Aligned_cols=141 Identities=9% Similarity=-0.049 Sum_probs=106.4
Q ss_pred eeEEECCCEEEEEcCCeEEEEEccCCc-----------eEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCc
Q 014003 237 GSLICEGPWVFVGMPNVVKAWHIESSA-----------EFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNP 305 (432)
Q Consensus 237 ~~~~~~~~~l~~~~~~~i~vwd~~~~~-----------~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~ 305 (432)
.++.+...+++++....+.+|+++... ......... |+.++|+.+.|+++ .++.|++||+.+...
T Consensus 43 Lais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~-- 118 (388)
T 1xip_A 43 LDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVS-TRNALYSLDLEELSE-- 118 (388)
T ss_dssp EEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEE-ESSEEEEEESSSTTC--
T ss_pred EEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEE-cCCcEEEEEchhhhc--
Confidence 344456778888877788889875433 111223445 99999944478877 889999999988643
Q ss_pred cccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCC
Q 014003 306 FQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 306 ~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~ 385 (432)
......|..++.++.+....+++++.||.|.+||+.++.... +...|.+++|+.+-++.|..||++++|+...
T Consensus 119 ---~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~ 191 (388)
T 1xip_A 119 ---FRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQLAVLLKDRSFQSFAWRN 191 (388)
T ss_dssp ---EEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred ---cCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCceEEEEcCCcEEEEcCCC
Confidence 334556777888888875569999999999999999887754 3457999999966689999999999998876
Q ss_pred CCc
Q 014003 386 EGN 388 (432)
Q Consensus 386 ~~~ 388 (432)
.+.
T Consensus 192 ~~~ 194 (388)
T 1xip_A 192 GEM 194 (388)
T ss_dssp TEE
T ss_pred ccc
Confidence 653
No 224
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.98 E-value=2.8e-07 Score=88.43 Aligned_cols=219 Identities=12% Similarity=0.113 Sum_probs=139.0
Q ss_pred ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCC--cEEEEeCCCCceeEEE-
Q 014003 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDG--TVQLWDCHTGQSASVI- 230 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg--~v~iWd~~~~~~~~~~- 230 (432)
.+++.+....+++...++.|++||.+++ ......... .... ++|+++++.|+.+..++ .|.+++..++.....+
T Consensus 135 ~la~d~~g~lyv~d~~~~~I~~id~~~g-~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g 211 (409)
T 3hrp_A 135 GIAAVGNNTVLAYQRDDPRVRLISVDDN-KVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIG 211 (409)
T ss_dssp EEEECSTTEEEEEETTTTEEEEEETTTT-EEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEE
T ss_pred EEEEeCCCCEEEEecCCCcEEEEECCCC-EEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEee
Confidence 4555555556667777889999999876 434334332 3333 99999999999998876 7999998776654444
Q ss_pred ---e-CCCceeeEE--E-CCCEEEEEcCCeEEEEEccCCceEee-----cCCcCCE-E-EEEEcCC---EEEEEECCCcE
Q 014003 231 ---N-LGAEVGSLI--C-EGPWVFVGMPNVVKAWHIESSAEFSL-----DGPVGEV-Y-SMVVANE---MLFAGAQDGNI 293 (432)
Q Consensus 231 ---~-~~~~~~~~~--~-~~~~l~~~~~~~i~vwd~~~~~~~~~-----~~~~~~v-~-~l~~~~~---~l~~g~~dg~i 293 (432)
. .......+. + ++.++++..++.|..||..++..... .+....- . .++++++ ++++-..++.|
T Consensus 212 ~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I 291 (409)
T 3hrp_A 212 QLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSV 291 (409)
T ss_dssp ECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEE
T ss_pred eccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEE
Confidence 2 222233333 3 34455544678899999987764433 1222222 2 8899883 55555677889
Q ss_pred EEEECCCCCCCccccceeeecc---------------ccCeEEEEEe--CCEEEEEe-CCCeEEEEECCCCceEEEecCC
Q 014003 294 LVWKGIPNTQNPFQLAALLKGH---------------TRPVTCLAVG--GKRLYSGS-MDNTIRVWDLDTLEAVMTLNGH 355 (432)
Q Consensus 294 ~~wd~~~~~~~~~~~~~~~~~h---------------~~~v~~l~~~--~~~l~sgs-~dg~I~vwd~~~~~~~~~~~~~ 355 (432)
+.||.... ...+.++ -.....++++ ++++++-+ .++.|+.||+.+++. .++.++
T Consensus 292 ~~~~~~g~-------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~ 363 (409)
T 3hrp_A 292 YKITPDGE-------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQ 363 (409)
T ss_dssp EEECTTCC-------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEEC
T ss_pred EEEecCCC-------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCC
Confidence 99987643 1112222 1346788887 77677766 789999999877764 444333
Q ss_pred ---------------CCCcEEEEEc--CCEEEEEeCCCcEEEEEc
Q 014003 356 ---------------TDAPMSLLCW--DQYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 356 ---------------~~~v~~~~~~--~~~l~s~s~dg~i~iwd~ 383 (432)
-.....++++ +.++++-..++.|+.+++
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 1235666666 455555566677776654
No 225
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.98 E-value=5.9e-09 Score=96.66 Aligned_cols=246 Identities=11% Similarity=0.070 Sum_probs=155.9
Q ss_pred CceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCce-e-eE
Q 014003 162 GNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEV-G-SL 239 (432)
Q Consensus 162 ~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~-~-~~ 239 (432)
+.+..+..++.|..|| .++ +....+..+...+.++...+++. |+.++.+ |..+|. +++....+...... . ..
T Consensus 31 g~l~v~t~~~~l~~~d-~~g-~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~ 104 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN-TDG-SVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFT 104 (330)
T ss_dssp SCEECSSTTTTTEEEC-TTS-CEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEE
T ss_pred CeEEEEcCCCEEEEEC-CCC-cEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCce
Confidence 3566667778888898 666 44444555555667787776665 5555554 888886 55544333222211 1 11
Q ss_pred EECCCEEEEEcCCeEEEEEccCCce-EeecCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeecccc
Q 014003 240 ICEGPWVFVGMPNVVKAWHIESSAE-FSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 240 ~~~~~~l~~~~~~~i~vwd~~~~~~-~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
..++.+.+++.++.+..+|.+ ++. .........+.++...++ .+++++.++.|..+|.. ++ ....+.....
T Consensus 105 ~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~-----~~~~~~~~~~ 177 (330)
T 3hxj_A 105 IFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GT-----EKWRFKTNDA 177 (330)
T ss_dssp EETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SC-----EEEEEECSSC
T ss_pred EECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CC-----EeEEEecCCC
Confidence 235555555568899999988 543 344444444556666645 78888899999999987 43 2333333445
Q ss_pred CeEEEEEe-CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceeEEeec
Q 014003 318 PVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTH 395 (432)
Q Consensus 318 ~v~~l~~~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 395 (432)
.+.++..+ +..++.++ +.|..+| .+++.+..+......+.++... +..|..++.++.+..+|. +++.+......
T Consensus 178 ~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~ 253 (330)
T 3hxj_A 178 ITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTG 253 (330)
T ss_dssp CCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECS
T ss_pred ceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCC
Confidence 56667775 55566666 8899999 7888888877666667777777 347888888888999974 44444444333
Q ss_pred cCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 396 NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 396 ~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
......+.. +++|. |..++.+|.|..+|.
T Consensus 254 ~~~~~~~~~----~~~g~--l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 254 KRIESSPVI----GNTDT--IYFGSYDGHLYAINP 282 (330)
T ss_dssp SCCCSCCEE----CTTSC--EEEECTTCEEEEECT
T ss_pred CCccccceE----cCCCe--EEEecCCCCEEEECC
Confidence 332333333 55666 666778888888874
No 226
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.97 E-value=7.6e-07 Score=79.33 Aligned_cols=203 Identities=13% Similarity=0.051 Sum_probs=138.3
Q ss_pred EEEEEEecccC--cEEEEEecCCCCEEEEEeC--CCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEE
Q 014003 183 TMLAKLEGHKK--AVSGIALPLRSDKLYSGSR--DGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWH 258 (432)
Q Consensus 183 ~~~~~l~~H~~--~V~~l~~~~~~~~l~s~s~--Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd 258 (432)
+.+.++ .|.. ....++|++++.+.++.+. +++|.+.|+.+++.+..+.....
T Consensus 10 ~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~----------------------- 65 (266)
T 2iwa_A 10 EVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS----------------------- 65 (266)
T ss_dssp EEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-----------------------
T ss_pred eEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-----------------------
Confidence 445556 3443 4689999998755555543 57999999999998887653221
Q ss_pred ccCCceEeecCCcCCEEEEEEcCCEE-EEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCe
Q 014003 259 IESSAEFSLDGPVGEVYSMVVANEML-FAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNT 337 (432)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~l~~~~~~l-~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~ 337 (432)
.....+++.++.+ ++.-.++.+.++|..+.+ .+..+......-..++.+++.++++..++.
T Consensus 66 -------------~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~-----v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~ 127 (266)
T 2iwa_A 66 -------------YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLS-----NIKNFTHQMKDGWGLATDGKILYGSDGTSI 127 (266)
T ss_dssp -------------CCEEEEEEETTEEEEEETTCSEEEEEETTTTE-----EEEEEECCSSSCCEEEECSSSEEEECSSSE
T ss_pred -------------cceEEEEEeCCEEEEEEecCCEEEEEECCCCc-----EEEEEECCCCCeEEEEECCCEEEEECCCCe
Confidence 1223456666644 445567899999988753 355554221222457788777777778899
Q ss_pred EEEEECCCCceEEEecCCCC-----CcEEEEEcCCEEEEEe-CCCcEEEEEcCCCCceeEEeecc-------------CC
Q 014003 338 IRVWDLDTLEAVMTLNGHTD-----APMSLLCWDQYLLSCS-LDNTIKVWIMTEEGNLEVAYTHN-------------ED 398 (432)
Q Consensus 338 I~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~-------------~~ 398 (432)
|.++|.++.+.+.++.-... ....+.+.+..+.+.. .++.|.+.|..+++.+..+.... ..
T Consensus 128 l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v 207 (266)
T 2iwa_A 128 LYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDV 207 (266)
T ss_dssp EEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCC
T ss_pred EEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCc
Confidence 99999999999888763221 2445666644555554 57899999999998887776421 11
Q ss_pred cceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 399 HGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 399 ~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
...+++ +|+++.+++++...+.|.+.++.
T Consensus 208 ~nGIa~----~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 208 LNGIAW----DQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EEEEEE----ETTTTEEEEEETTCSEEEEEEEE
T ss_pred eEEEEE----cCCCCEEEEECCCCCeEEEEEEe
Confidence 234454 89998889999899999887753
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.95 E-value=2.6e-07 Score=94.54 Aligned_cols=250 Identities=12% Similarity=0.064 Sum_probs=157.6
Q ss_pred ccCceeeCCCCCeEEEEeCCCCcEEEEEEecc-c----CcEEEEEecCCCCEEEEEeC------CCcEEEEeCCCCceeE
Q 014003 160 LSGNCVKGDECRFWHSWFCGEGFTMLAKLEGH-K----KAVSGIALPLRSDKLYSGSR------DGTVQLWDCHTGQSAS 228 (432)
Q Consensus 160 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H-~----~~V~~l~~~~~~~~l~s~s~------Dg~v~iWd~~~~~~~~ 228 (432)
....++.++.|+.+..+|..++ +.+..+..+ . ..+.+--.. .+..++.++. ++.|..+|.++|+.+-
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG-~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATG-KEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTC-CEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCC-CEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 4567778888999999999998 556666654 1 112110000 2345555543 7999999999999998
Q ss_pred EEeCCCce-----------------------------------eeEEECCCEEEEEcCC--------------------e
Q 014003 229 VINLGAEV-----------------------------------GSLICEGPWVFVGMPN--------------------V 253 (432)
Q Consensus 229 ~~~~~~~~-----------------------------------~~~~~~~~~l~~~~~~--------------------~ 253 (432)
.+...... ..+..++..++.+..+ .
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 88753221 1122355666655322 4
Q ss_pred EEEEEccCCceEee-c--CC--------cCC-EEEEEEcC---CEEEEEECCCcEEEEECCCCCCCccccceeeecc---
Q 014003 254 VKAWHIESSAEFSL-D--GP--------VGE-VYSMVVAN---EMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH--- 315 (432)
Q Consensus 254 i~vwd~~~~~~~~~-~--~~--------~~~-v~~l~~~~---~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h--- 315 (432)
|..+|.++++..-. . .+ ..+ +....... ..++.++.+|.++++|..+++. +...+..
T Consensus 285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~-----l~~~~~~~~~ 359 (677)
T 1kb0_A 285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF-----ISAKNFVPVN 359 (677)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE-----EEEEESSCCS
T ss_pred EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE-----eccccccccC
Confidence 99999999986522 1 12 112 22333344 4788899999999999998863 1111100
Q ss_pred --------ccCe------------------------EEEEEe--CCEEEEEeC---------------------------
Q 014003 316 --------TRPV------------------------TCLAVG--GKRLYSGSM--------------------------- 334 (432)
Q Consensus 316 --------~~~v------------------------~~l~~~--~~~l~sgs~--------------------------- 334 (432)
..++ ..++++ ..++++...
T Consensus 360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 439 (677)
T 1kb0_A 360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG 439 (677)
T ss_dssp SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccc
Confidence 0000 134565 566666543
Q ss_pred ----------------CCeEEEEECCCCceEEEecCCCCCcE--EEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeecc
Q 014003 335 ----------------DNTIRVWDLDTLEAVMTLNGHTDAPM--SLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN 396 (432)
Q Consensus 335 ----------------dg~I~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 396 (432)
.|.|..||+.+++.+.++... ..+. .+...+..++.++.||.+++||.++++.+..+....
T Consensus 440 ~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 440 WNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp CCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred cccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 278999999999999888633 2222 244457889999999999999999999988877544
Q ss_pred CCcc-eEEEeeeeCCCCCcEEEEEeC
Q 014003 397 EDHG-VLALGGLNDPDGNPVLICSCN 421 (432)
Q Consensus 397 ~~~~-~~~~~~~~sp~g~~~l~sg~~ 421 (432)
.... .+. |.++|+.+++..+.
T Consensus 519 ~~~~~p~~----y~~~G~~~v~~~~G 540 (677)
T 1kb0_A 519 GVVAAPST----YMVDGRQYVSVAVG 540 (677)
T ss_dssp CCCSCCEE----EEETTEEEEEEEEC
T ss_pred CcccCCEE----EEeCCEEEEEEecc
Confidence 3222 222 25788766665433
No 228
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.92 E-value=4.4e-10 Score=106.58 Aligned_cols=181 Identities=15% Similarity=0.084 Sum_probs=106.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceee--EEECCCEEEE-EcCCeEEEEEccCCceE-eecCCcC-CEE-E
Q 014003 203 RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGS--LICEGPWVFV-GMPNVVKAWHIESSAEF-SLDGPVG-EVY-S 276 (432)
Q Consensus 203 ~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~--~~~~~~~l~~-~~~~~i~vwd~~~~~~~-~~~~~~~-~v~-~ 276 (432)
++..+++++.||.|..||..+|+.+..+.. ..+.+ +..++..+++ +.++.|+.||.++++.. ....+.. .+. +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 578899999999999999999999988877 33322 2345555555 58999999999887653 2222211 010 1
Q ss_pred EEE-cCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCC
Q 014003 277 MVV-ANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGH 355 (432)
Q Consensus 277 l~~-~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~ 355 (432)
..+ ..+.+++++.++.|+.||..+++. +..+..+.. + ..+.++..+++++.|+.|+.||.++++.+..+..+
T Consensus 87 p~~~~~~~v~~g~~dg~v~a~D~~tG~~-----~w~~~~~~~-~-~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 87 PCRSSDGILYMGKKQDIWYVIDLLTGEK-----QQTLSSAFA-D-SLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF 159 (369)
T ss_dssp SCC-----CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred ceEecCCEEEEEeCCCEEEEEECCCCcE-----EEEecCCCc-c-cccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence 111 234778888999999999998864 233332221 1 12225788999999999999999999987766432
Q ss_pred CCCcEEEEEcC-----CEEEEEeCCCcEEEEEcCCCCceeEEe
Q 014003 356 TDAPMSLLCWD-----QYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 356 ~~~v~~~~~~~-----~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (432)
.. ....+.+ ..+++++.||.|..||..+++.+....
T Consensus 160 ~~--~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 160 DY--AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EE--CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred cc--cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 11 1122222 678889999999999999988766554
No 229
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.91 E-value=9.7e-07 Score=81.88 Aligned_cols=212 Identities=12% Similarity=-0.018 Sum_probs=131.0
Q ss_pred eEEeeccC-ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC
Q 014003 155 VCYHWLSG-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (432)
Q Consensus 155 ~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~ 233 (432)
.++.+... .++++..++.|..|+.+++.. ..+. +...+.+++++++++++++. .+ .|.+||..+++........
T Consensus 54 p~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~ 128 (326)
T 2ghs_A 54 PTFDPASGTAWWFNILERELHELHLASGRK--TVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELE 128 (326)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSS
T ss_pred CeEeCCCCEEEEEECCCCEEEEEECCCCcE--EEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCC
Confidence 34444333 455566678999999987632 2232 35689999999999877765 44 4999999888765444322
Q ss_pred C-----ceeeEE--ECCCEEEEEcC-------CeEEEEEccCCceEeecCCcCCEEEEEEcCC--EE-EEEECCCcEEEE
Q 014003 234 A-----EVGSLI--CEGPWVFVGMP-------NVVKAWHIESSAEFSLDGPVGEVYSMVVANE--ML-FAGAQDGNILVW 296 (432)
Q Consensus 234 ~-----~~~~~~--~~~~~l~~~~~-------~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~g~~dg~i~~w 296 (432)
. .+..+. +++.+.++... +.|..++ +++.............++++++ .+ ++.+.++.|.+|
T Consensus 129 ~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~ 206 (326)
T 2ghs_A 129 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRV 206 (326)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEE
Confidence 1 233333 46676665532 3555555 4444333333345678899887 44 444567899999
Q ss_pred ECC--CC-CCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc---CCE
Q 014003 297 KGI--PN-TQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW---DQY 368 (432)
Q Consensus 297 d~~--~~-~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~ 368 (432)
|+. ++ .....+....+.........++++ |++.++...++.|.+||. +++.+..+..+...+.++++. ++.
T Consensus 207 d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~ 285 (326)
T 2ghs_A 207 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASR 285 (326)
T ss_dssp EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCE
T ss_pred EcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCE
Confidence 986 44 211111222222233445678886 666666666789999998 678888887777678888886 245
Q ss_pred EEEEeC
Q 014003 369 LLSCSL 374 (432)
Q Consensus 369 l~s~s~ 374 (432)
|+.++.
T Consensus 286 L~vt~~ 291 (326)
T 2ghs_A 286 LLVTSA 291 (326)
T ss_dssp EEEEEB
T ss_pred EEEEec
Confidence 544443
No 230
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.82 E-value=1.8e-06 Score=79.21 Aligned_cols=212 Identities=13% Similarity=0.042 Sum_probs=133.9
Q ss_pred ceEEeeccC-ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC
Q 014003 154 NVCYHWLSG-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (432)
Q Consensus 154 ~~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 232 (432)
...+.+... .++++..++.|..|+.... ...+..+...+.+++++++|+++++...++.|..||.+ ++.......
T Consensus 49 gp~~~~~g~~l~~~d~~~~~i~~~~~~g~---~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~ 124 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLVGRRVLGWREDGT---VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGR 124 (305)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEETTSC---EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECE
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEeCCCC---EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEec
Confidence 344555555 5677778899999998543 34455567789999999999977766667889999986 554332221
Q ss_pred CC-----ceeeE--EECCCEEEE----Ec--------------CCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEE
Q 014003 233 GA-----EVGSL--ICEGPWVFV----GM--------------PNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLF 285 (432)
Q Consensus 233 ~~-----~~~~~--~~~~~~l~~----~~--------------~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~ 285 (432)
.. ....+ ..++.+.++ +. .+.|..+|.++++..... .......++++++ .|+
T Consensus 125 ~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~ly 203 (305)
T 3dr2_A 125 YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLY 203 (305)
T ss_dssp ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEE
T ss_pred cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEE
Confidence 11 11223 346776664 21 256777787666654444 4456778999988 566
Q ss_pred EEECC------CcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEecCCCC
Q 014003 286 AGAQD------GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTD 357 (432)
Q Consensus 286 ~g~~d------g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~ 357 (432)
++... +.|.+||+..+.....+... .........++++ |+ |.+++.+ .|.+||. .++.+..+..+.
T Consensus 204 v~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~--~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~~~- 277 (305)
T 3dr2_A 204 VSQTPEQGHGSVEITAFAWRDGALHDRRHFA--SVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DGQLLGHIPTPG- 277 (305)
T ss_dssp EEECCC---CCCEEEEEEEETTEEEEEEEEE--CCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TSCEEEEEECSS-
T ss_pred EEecCCcCCCCCEEEEEEecCCCccCCeEEE--ECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CCCEEEEEECCC-
Confidence 66655 78999998754210001111 1112334456776 66 5555555 4999998 577777776555
Q ss_pred CcEEEEEc--CCEEEEEeCCC
Q 014003 358 APMSLLCW--DQYLLSCSLDN 376 (432)
Q Consensus 358 ~v~~~~~~--~~~l~s~s~dg 376 (432)
.+.++.+. ++.|+.++.++
T Consensus 278 ~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 278 TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp CCCEEEECTTSCEEEEEETTE
T ss_pred ceeEEEEeCCCCEEEEEcCCe
Confidence 47777775 56777777654
No 231
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.78 E-value=1.6e-06 Score=82.84 Aligned_cols=233 Identities=9% Similarity=-0.056 Sum_probs=150.6
Q ss_pred ceEEeeccCceeeCC----------CCCeEEEEeCCCCcEEEEEEecc-------cCcEEEEEecCCCCEEEEEeC--CC
Q 014003 154 NVCYHWLSGNCVKGD----------ECRFWHSWFCGEGFTMLAKLEGH-------KKAVSGIALPLRSDKLYSGSR--DG 214 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~----------~d~~i~vw~~~~~~~~~~~l~~H-------~~~V~~l~~~~~~~~l~s~s~--Dg 214 (432)
.+.+.+....+..+. .++.|.++|..+. +.+.++.-- ...-..++|+|||++|+.+.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~-~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF-LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC-CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC-cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCC
Confidence 556666666444433 4678999999887 556655421 123457899999999999875 58
Q ss_pred cEEEEeCCCCceeEEEeCCCceeeEEE--CCCEEEEEcCCeEEEEEccCCceEee-----cCCcCCE-EEEEEcCC--EE
Q 014003 215 TVQLWDCHTGQSASVINLGAEVGSLIC--EGPWVFVGMPNVVKAWHIESSAEFSL-----DGPVGEV-YSMVVANE--ML 284 (432)
Q Consensus 215 ~v~iWd~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~i~vwd~~~~~~~~~-----~~~~~~v-~~l~~~~~--~l 284 (432)
+|.+.|+.+++.+..+..... ..+.+ ...++..+.|+.+.+.+..+++.... .....++ ..+.+.++ .+
T Consensus 201 ~VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~ 279 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRL 279 (426)
T ss_dssp EEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEE
T ss_pred eEEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEE
Confidence 899999999999999887554 22333 23345566888888888865554321 1111111 12334444 56
Q ss_pred EEEECCCcEEEEECCCCCCCccccceeeec----------cccCeEEEEEe--CCEEEEEeC----------CCeEEEEE
Q 014003 285 FAGAQDGNILVWKGIPNTQNPFQLAALLKG----------HTRPVTCLAVG--GKRLYSGSM----------DNTIRVWD 342 (432)
Q Consensus 285 ~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~----------h~~~v~~l~~~--~~~l~sgs~----------dg~I~vwd 342 (432)
+..+..+.+.+.|....... ....+.. .......++++ ++++++... ++.|.++|
T Consensus 280 ~~~s~~g~V~ViD~~~~~~~---v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID 356 (426)
T 3c75_H 280 VWPTYTGKIFQADLTAEGAT---FRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN 356 (426)
T ss_dssp EEEBTTSEEEEEEECSSCEE---ECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred EEEeCCCcEEEEeccCCceE---EeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence 66677899999998654311 1111100 00111123454 677666542 35799999
Q ss_pred CCCCceEEEecCCCCCcEEEEEc--CC-EEEEEe-CCCcEEEEEcCCCCceeEE
Q 014003 343 LDTLEAVMTLNGHTDAPMSLLCW--DQ-YLLSCS-LDNTIKVWIMTEEGNLEVA 392 (432)
Q Consensus 343 ~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~s-~dg~i~iwd~~~~~~~~~~ 392 (432)
+.+++.+.++.... ....+.++ ++ ++++.. .++.|.++|+.+.+.+..+
T Consensus 357 ~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 357 AETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 99999999886332 35666666 67 888887 5999999999999888776
No 232
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.78 E-value=2.7e-06 Score=75.01 Aligned_cols=194 Identities=10% Similarity=0.078 Sum_probs=130.0
Q ss_pred EEEEEEeccc--CcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEcc
Q 014003 183 TMLAKLEGHK--KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIE 260 (432)
Q Consensus 183 ~~~~~l~~H~--~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~ 260 (432)
+.+.++ .|. .-...|.|+ ++.+.++.+.+|.|+++|+++++.+..+ ....
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~------------------------- 95 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN------------------------- 95 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT-------------------------
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC-------------------------
Confidence 345555 344 345789987 4677788888899999999999988765 3221
Q ss_pred CCceEeecCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeEE
Q 014003 261 SSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIR 339 (432)
Q Consensus 261 ~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~ 339 (432)
..-..+++.++ +.++.-.++.+.+||..+.+ .+.++.... .-..++.+++.|+.+..++.|.
T Consensus 96 -----------~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~-----~~~ti~~~~-eGwGLt~Dg~~L~vSdGs~~l~ 158 (268)
T 3nok_A 96 -----------IFAEGLASDGERLYQLTWTEGLLFTWSGMPPQ-----RERTTRYSG-EGWGLCYWNGKLVRSDGGTMLT 158 (268)
T ss_dssp -----------CCEEEEEECSSCEEEEESSSCEEEEEETTTTE-----EEEEEECSS-CCCCEEEETTEEEEECSSSEEE
T ss_pred -----------cceeEEEEeCCEEEEEEccCCEEEEEECCcCc-----EEEEEeCCC-ceeEEecCCCEEEEECCCCEEE
Confidence 11123555556 44445578899999988754 455555322 2356778888888888899999
Q ss_pred EEECCCCceEEEecCCCC-----CcEEEEEcCCEEEEEe-CCCcEEEEEcCCCCceeEEeecc---------CCcceEEE
Q 014003 340 VWDLDTLEAVMTLNGHTD-----APMSLLCWDQYLLSCS-LDNTIKVWIMTEEGNLEVAYTHN---------EDHGVLAL 404 (432)
Q Consensus 340 vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~ 404 (432)
++|.++.+.+.++.-... .+..+.+.+..|.+.. .++.|.+.|..+++.+..+.... .....+.-
T Consensus 159 ~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlN 238 (268)
T 3nok_A 159 FHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLN 238 (268)
T ss_dssp EECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEE
T ss_pred EEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceE
Confidence 999999999888764221 2355666644555554 68899999999998877766431 11112222
Q ss_pred eeeeCCCCCcEEEEEeC
Q 014003 405 GGLNDPDGNPVLICSCN 421 (432)
Q Consensus 405 ~~~~sp~g~~~l~sg~~ 421 (432)
..+++|+++.++++|-.
T Consensus 239 GIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 239 GIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEEECTTTCCEEEEETT
T ss_pred EEEEcCCCCEEEEeCCC
Confidence 33448988878888843
No 233
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.76 E-value=4.9e-06 Score=72.63 Aligned_cols=195 Identities=15% Similarity=0.083 Sum_probs=130.2
Q ss_pred EEEEEEeccc--CcEEEEEecCCCCEEEEEeCCC--cEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEE
Q 014003 183 TMLAKLEGHK--KAVSGIALPLRSDKLYSGSRDG--TVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWH 258 (432)
Q Consensus 183 ~~~~~l~~H~--~~V~~l~~~~~~~~l~s~s~Dg--~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd 258 (432)
+.+.++ .|. .-...+.|+. +.+..+.+.+| .|+.+|+++++.+.........
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~---------------------- 65 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY---------------------- 65 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC----------------------
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc----------------------
Confidence 556666 564 4577999986 56666767654 8999999999998877643321
Q ss_pred ccCCceEeecCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCe
Q 014003 259 IESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNT 337 (432)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~ 337 (432)
.-..+++.++ +....-.++.+.+||..+.+ .+.++..... -..++.++..|+.+..++.
T Consensus 66 --------------fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~-----~~~ti~~~~~-Gwglt~dg~~L~vSdgs~~ 125 (243)
T 3mbr_X 66 --------------FGAGIVAWRDRLIQLTWRNHEGFVYDLATLT-----PRARFRYPGE-GWALTSDDSHLYMSDGTAV 125 (243)
T ss_dssp --------------CEEEEEEETTEEEEEESSSSEEEEEETTTTE-----EEEEEECSSC-CCEEEECSSCEEEECSSSE
T ss_pred --------------ceeEEEEeCCEEEEEEeeCCEEEEEECCcCc-----EEEEEeCCCC-ceEEeeCCCEEEEECCCCe
Confidence 1123445556 44445578899999988753 4555554332 3567788777777777899
Q ss_pred EEEEECCCCceEEEecCCC-----CCcEEEEEcCCEEEEEe-CCCcEEEEEcCCCCceeEEeecc---------CCcceE
Q 014003 338 IRVWDLDTLEAVMTLNGHT-----DAPMSLLCWDQYLLSCS-LDNTIKVWIMTEEGNLEVAYTHN---------EDHGVL 402 (432)
Q Consensus 338 I~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~ 402 (432)
|.++|.++.+.+.++.-.. ..+..+.+.+..|.+.. .+..|.+.|.++++.+..+.... .....+
T Consensus 126 l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~v 205 (243)
T 3mbr_X 126 IRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDV 205 (243)
T ss_dssp EEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSC
T ss_pred EEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCc
Confidence 9999999999988876432 23455666654455554 67899999999998877766331 011112
Q ss_pred EEeeeeCCCCCcEEEEEeC
Q 014003 403 ALGGLNDPDGNPVLICSCN 421 (432)
Q Consensus 403 ~~~~~~sp~g~~~l~sg~~ 421 (432)
.-..+++|+++.++++|-.
T Consensus 206 lNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 206 LNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred eEEEEEcCCCCEEEEECCC
Confidence 2333448988878888743
No 234
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.75 E-value=1.8e-06 Score=88.08 Aligned_cols=258 Identities=17% Similarity=0.154 Sum_probs=157.8
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCc----------E-EEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKA----------V-SGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASV 229 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~----------V-~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~ 229 (432)
.+.+..++.++.|..+|..++ +.+..+...... + ..+++ .+..++.++.|+.|..+|.++|+.+-.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASG-KELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTC-CEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCC-hhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 345555666788999999888 555555432211 0 11222 356788899999999999999999988
Q ss_pred EeCCCc-----e--eeEEECCCEEEEEc------CCeEEEEEccCCceEe-ecC---CcC--------------------
Q 014003 230 INLGAE-----V--GSLICEGPWVFVGM------PNVVKAWHIESSAEFS-LDG---PVG-------------------- 272 (432)
Q Consensus 230 ~~~~~~-----~--~~~~~~~~~l~~~~------~~~i~vwd~~~~~~~~-~~~---~~~-------------------- 272 (432)
+..... + ..+..++.+++... ++.|..+|.++++..- ... ...
T Consensus 143 ~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~ 222 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY 222 (668)
T ss_dssp EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred eccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence 876321 1 11223444444332 4899999999998652 211 000
Q ss_pred --------CEEEEEEcCC--EEEEEECCC-------------------cEEEEECCCCCCCccccceeeec--cc-----
Q 014003 273 --------EVYSMVVANE--MLFAGAQDG-------------------NILVWKGIPNTQNPFQLAALLKG--HT----- 316 (432)
Q Consensus 273 --------~v~~l~~~~~--~l~~g~~dg-------------------~i~~wd~~~~~~~~~~~~~~~~~--h~----- 316 (432)
....++++++ +++.++.++ .|..+|..+++. +-.++. |.
T Consensus 223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~-----~W~~~~~~~~~wd~~ 297 (668)
T 1kv9_A 223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL-----AWHYQVTPGDSWDFT 297 (668)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE-----EEEEESSTTCCSCCC
T ss_pred eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce-----eeEeecCCCcccccc
Confidence 0113566553 777877766 399999998863 222221 21
Q ss_pred --cCeE--EEEEeCC---EEEEEeCCCeEEEEECCCCceEEEecCCCCC------------c------------------
Q 014003 317 --RPVT--CLAVGGK---RLYSGSMDNTIRVWDLDTLEAVMTLNGHTDA------------P------------------ 359 (432)
Q Consensus 317 --~~v~--~l~~~~~---~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~------------v------------------ 359 (432)
.+.. .+.++++ .++.++.+|.++++|.++|+.+......... +
T Consensus 298 ~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~ 377 (668)
T 1kv9_A 298 ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP 377 (668)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence 2222 2344554 6899999999999999999998544322100 0
Q ss_pred ------EEEEEc--CCEEEEE------------------------------------eCCCcEEEEEcCCCCceeEEeec
Q 014003 360 ------MSLLCW--DQYLLSC------------------------------------SLDNTIKVWIMTEEGNLEVAYTH 395 (432)
Q Consensus 360 ------~~~~~~--~~~l~s~------------------------------------s~dg~i~iwd~~~~~~~~~~~~~ 395 (432)
..++++ ...++.. ..+|.|..||+.+++.+......
T Consensus 378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~ 457 (668)
T 1kv9_A 378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP 457 (668)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES
T ss_pred ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC
Confidence 002222 2233221 13488999999999877666543
Q ss_pred cCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 396 NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 396 ~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
..... ..+ ...+. +++.++.||.|+.||.++
T Consensus 458 ~~~~~-~~~----~t~gg-~vf~g~~dg~l~a~d~~t 488 (668)
T 1kv9_A 458 THWNG-GTL----STAGN-LVFQGTAAGQMHAYSADK 488 (668)
T ss_dssp SSCCC-CEE----EETTT-EEEEECTTSEEEEEETTT
T ss_pred CCCcC-cee----EeCCC-EEEEECCcccchhhhhhc
Confidence 33221 122 23455 788889999999999864
No 235
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.75 E-value=2.6e-06 Score=75.11 Aligned_cols=184 Identities=13% Similarity=0.083 Sum_probs=125.7
Q ss_pred EEEEEEecccC--cEEEEEecCCCCEEEEEeCCC--cEEEEeCCCCceeEEEeCCCce--eeEEECCCEEEEE--cCCeE
Q 014003 183 TMLAKLEGHKK--AVSGIALPLRSDKLYSGSRDG--TVQLWDCHTGQSASVINLGAEV--GSLICEGPWVFVG--MPNVV 254 (432)
Q Consensus 183 ~~~~~l~~H~~--~V~~l~~~~~~~~l~s~s~Dg--~v~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~--~~~~i 254 (432)
+.+.++ .|.. -...|.|+ ++.+..+.+.+| .|+++|+++++.+..+...... ..+...+..+... .++.+
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence 456666 4543 34889998 677777777776 8999999999999999877654 3455566666555 58999
Q ss_pred EEEEccCCceEeecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeec--cc---cCeEEEEEeCCEE
Q 014003 255 KAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKG--HT---RPVTCLAVGGKRL 329 (432)
Q Consensus 255 ~vwd~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~--h~---~~v~~l~~~~~~l 329 (432)
.++|.++.+.+........=..++.....|+.+..++.|.++|..+.+. ...+.- .. ..+..+.+.+..+
T Consensus 110 ~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v-----~~~I~V~~~g~~~~~lNELe~~~G~l 184 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTP-----VRTITVTAHGEELPELNELEWVDGEI 184 (262)
T ss_dssp EEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSE-----EEEEECEETTEECCCEEEEEEETTEE
T ss_pred EEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeE-----EEEEEeccCCccccccceeEEECCEE
Confidence 9999999987644333334456777777666666688899999887642 333322 11 2344566653345
Q ss_pred EEEe-CCCeEEEEECCCCceEEEecCC------------CCCcEEEEEc--CCEEEEEe
Q 014003 330 YSGS-MDNTIRVWDLDTLEAVMTLNGH------------TDAPMSLLCW--DQYLLSCS 373 (432)
Q Consensus 330 ~sgs-~dg~I~vwd~~~~~~~~~~~~~------------~~~v~~~~~~--~~~l~s~s 373 (432)
++.. .+..|.+.|.++++.+..+... ......++++ ++.|+..+
T Consensus 185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 5544 6889999999999999888542 1234678887 34554444
No 236
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.73 E-value=8.7e-06 Score=81.60 Aligned_cols=188 Identities=11% Similarity=0.072 Sum_probs=115.3
Q ss_pred cCceeeCCC-CCeEEEEeC-CCCcEEEEEEecccCc-----------EEEEEecCCCCE----EEEEeCCCcEEEEeCCC
Q 014003 161 SGNCVKGDE-CRFWHSWFC-GEGFTMLAKLEGHKKA-----------VSGIALPLRSDK----LYSGSRDGTVQLWDCHT 223 (432)
Q Consensus 161 ~~~~~~g~~-d~~i~vw~~-~~~~~~~~~l~~H~~~-----------V~~l~~~~~~~~----l~s~s~Dg~v~iWd~~~ 223 (432)
.+.+..++. ++.|..+|. .++ +.+-.+...... ...+++.|.+.. ++.++.|+.|..+|.++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG-~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPG-TILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTT-SEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCC-cEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence 344555555 788888898 777 445555432210 123455444444 88899999999999999
Q ss_pred CceeEEEeCCC-----cee--eEEECCCEEEEEc------CCeEEEEEccCCceEe-ecCCcCC----------------
Q 014003 224 GQSASVINLGA-----EVG--SLICEGPWVFVGM------PNVVKAWHIESSAEFS-LDGPVGE---------------- 273 (432)
Q Consensus 224 ~~~~~~~~~~~-----~~~--~~~~~~~~l~~~~------~~~i~vwd~~~~~~~~-~~~~~~~---------------- 273 (432)
|+.+-...... .+. .+..++.+++.+. ++.|..+|.++++..- .......
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 220 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHY 220 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred CCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccc
Confidence 99998877654 121 2334555444432 7899999999998652 2111000
Q ss_pred ---------------------E-EEEEEcC--CEEEEEECC----------------CcEEEEECCCCCCCccccceeee
Q 014003 274 ---------------------V-YSMVVAN--EMLFAGAQD----------------GNILVWKGIPNTQNPFQLAALLK 313 (432)
Q Consensus 274 ---------------------v-~~l~~~~--~~l~~g~~d----------------g~i~~wd~~~~~~~~~~~~~~~~ 313 (432)
+ ..+++++ ++++.++.+ +.|..+|..+++.. -.....
T Consensus 221 g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~---W~~q~~ 297 (599)
T 1w6s_A 221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK---FGYQKT 297 (599)
T ss_dssp CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE---EEEESS
T ss_pred cccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee---eEeecC
Confidence 0 1233433 367776655 38999999988631 111122
Q ss_pred cc--------ccCeEEEEE---eC---CEEEEEeCCCeEEEEECCCCceEEEec
Q 014003 314 GH--------TRPVTCLAV---GG---KRLYSGSMDNTIRVWDLDTLEAVMTLN 353 (432)
Q Consensus 314 ~h--------~~~v~~l~~---~~---~~l~sgs~dg~I~vwd~~~~~~~~~~~ 353 (432)
.| ..++. +.. +| ..++.++.+|.++++|.++|+++....
T Consensus 298 ~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 298 PHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp TTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 22 12222 222 35 467789999999999999999987664
No 237
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.73 E-value=8.2e-06 Score=74.69 Aligned_cols=227 Identities=14% Similarity=0.078 Sum_probs=133.3
Q ss_pred EEEEecccCcEEEEEecCCCC-EEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--ECCCEEEEEc-CCeEEEEEcc
Q 014003 185 LAKLEGHKKAVSGIALPLRSD-KLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVFVGM-PNVVKAWHIE 260 (432)
Q Consensus 185 ~~~l~~H~~~V~~l~~~~~~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~-~~~i~vwd~~ 260 (432)
+..+..+.....+.+|+++++ ++++...++.|..|+. +++.............+. .++.++++.. ++.|..|+.+
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 334445566778899999998 6777778899999998 455333333333444444 4677776664 4789999986
Q ss_pred CCceEeecCC-----cCCEEEEEEcCC--EEEE----EEC-------------CCcEEEEECCCCCCCccccceeeeccc
Q 014003 261 SSAEFSLDGP-----VGEVYSMVVANE--MLFA----GAQ-------------DGNILVWKGIPNTQNPFQLAALLKGHT 316 (432)
Q Consensus 261 ~~~~~~~~~~-----~~~v~~l~~~~~--~l~~----g~~-------------dg~i~~wd~~~~~~~~~~~~~~~~~h~ 316 (432)
++...+... ...+..+.++++ ++++ |.. .+.|..+|..+++. ..+. ..
T Consensus 116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~------~~~~-~~ 187 (305)
T 3dr2_A 116 -GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL------QRMA-DL 187 (305)
T ss_dssp -SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC------EEEE-EE
T ss_pred -CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE------EEEe-cC
Confidence 443322211 123567888887 4443 332 25677777765542 1111 23
Q ss_pred cCeEEEEEe--CCEEEEEeCC------CeEEEEECCCCce--EEEe-cCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEc
Q 014003 317 RPVTCLAVG--GKRLYSGSMD------NTIRVWDLDTLEA--VMTL-NGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 317 ~~v~~l~~~--~~~l~sgs~d------g~I~vwd~~~~~~--~~~~-~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~ 383 (432)
.....++|+ ++.|+.+... +.|.+||+..... ...+ .........+.++ ++ |.+++.+ .|.+|+.
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~ 265 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS 265 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC
Confidence 345678887 7777777665 7899999876541 1111 1122233445555 56 5555544 4999998
Q ss_pred CCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 384 TEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
+++.+..+.... ....+++ +|+++ .|..++.++ +..+++
T Consensus 266 -~g~~~~~~~~~~-~~~~~~f----~~d~~-~L~it~~~~-l~~~~~ 304 (305)
T 3dr2_A 266 -DGQLLGHIPTPG-TASNCTF----DQAQQ-RLFITGGPC-LWMLPL 304 (305)
T ss_dssp -TSCEEEEEECSS-CCCEEEE----CTTSC-EEEEEETTE-EEEEEC
T ss_pred -CCCEEEEEECCC-ceeEEEE----eCCCC-EEEEEcCCe-EEEEEC
Confidence 455555544433 3455555 68888 555555554 444444
No 238
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.72 E-value=7.1e-06 Score=82.06 Aligned_cols=258 Identities=9% Similarity=0.021 Sum_probs=153.4
Q ss_pred cCceeeCCC-CCeEEEEeC-CCCcEEEEEEecccC-c---------E-EEEEecCCCCEEEEEeCCCcEEEEeCCCCcee
Q 014003 161 SGNCVKGDE-CRFWHSWFC-GEGFTMLAKLEGHKK-A---------V-SGIALPLRSDKLYSGSRDGTVQLWDCHTGQSA 227 (432)
Q Consensus 161 ~~~~~~g~~-d~~i~vw~~-~~~~~~~~~l~~H~~-~---------V-~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~ 227 (432)
.+.+..++. ++.|..+|. .++ +.+..+..... . + ..+++ .+..++.++.|+.|..+|..+|+.+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~ 138 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPG-KIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKIN 138 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTT-SEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCc-cEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 344445555 788888998 777 44544432211 0 0 11222 3667888999999999999999999
Q ss_pred EEEeCCC-----cee--eEEECCCEEEEEc------CCeEEEEEccCCceEe-ecCCcC---------------------
Q 014003 228 SVINLGA-----EVG--SLICEGPWVFVGM------PNVVKAWHIESSAEFS-LDGPVG--------------------- 272 (432)
Q Consensus 228 ~~~~~~~-----~~~--~~~~~~~~l~~~~------~~~i~vwd~~~~~~~~-~~~~~~--------------------- 272 (432)
-...... .+. .+..++.+++... ++.|..+|.++++..- ......
T Consensus 139 W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~ 218 (571)
T 2ad6_A 139 WEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred EEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccc
Confidence 8887654 121 1234554444443 6899999999998652 211100
Q ss_pred ----------------CE-EEEEEcCC--EEEEEECC----------------CcEEEEECCCCCCCccccceeee--cc
Q 014003 273 ----------------EV-YSMVVANE--MLFAGAQD----------------GNILVWKGIPNTQNPFQLAALLK--GH 315 (432)
Q Consensus 273 ----------------~v-~~l~~~~~--~l~~g~~d----------------g~i~~wd~~~~~~~~~~~~~~~~--~h 315 (432)
.+ ..++++++ .++.++.+ +.|..+|..+++. +-.++ .|
T Consensus 219 ~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~-----~W~~~~~~~ 293 (571)
T 2ad6_A 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA-----KWGYQKTPH 293 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE-----EEEEESSTT
T ss_pred cccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE-----EEEecCCCC
Confidence 00 12444443 66665532 3599999998763 22222 11
Q ss_pred --------ccCeE-EEEEeC---CEEEEEeCCCeEEEEECCCCceEEEecCCC-------------CCc-----------
Q 014003 316 --------TRPVT-CLAVGG---KRLYSGSMDNTIRVWDLDTLEAVMTLNGHT-------------DAP----------- 359 (432)
Q Consensus 316 --------~~~v~-~l~~~~---~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~-------------~~v----------- 359 (432)
..++. ....+| ..++.++.+|.++++|.++|+.+..+.... .++
T Consensus 294 d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~ 373 (571)
T 2ad6_A 294 DEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDH 373 (571)
T ss_dssp CSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTC
T ss_pred cccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCC
Confidence 22222 122345 357789999999999999999987764321 001
Q ss_pred ---------------EEEEEc--CCEEEEEe-------------------------------------CCCcEEEEEcCC
Q 014003 360 ---------------MSLLCW--DQYLLSCS-------------------------------------LDNTIKVWIMTE 385 (432)
Q Consensus 360 ---------------~~~~~~--~~~l~s~s-------------------------------------~dg~i~iwd~~~ 385 (432)
..++++ ..+++..+ .+|.|..||+.+
T Consensus 374 ~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t 453 (571)
T 2ad6_A 374 KGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT 453 (571)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT
T ss_pred CceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC
Confidence 012233 24444432 357899999999
Q ss_pred CCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCCC
Q 014003 386 EGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELPS 432 (432)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~s 432 (432)
++.+............ .+ ...+. +++.++.||.|+.||.+|
T Consensus 454 G~~~W~~~~~~~~~~~-~~----~t~gg-~v~~g~~dg~l~a~D~~t 494 (571)
T 2ad6_A 454 GKAKWTKWEKFAAWGG-TL----YTKGG-LVWYATLDGYLKALDNKD 494 (571)
T ss_dssp CCEEEEEEESSCCCSB-CE----EETTT-EEEEECTTSEEEEEETTT
T ss_pred CCEEEEecCCCCccce-eE----EECCC-EEEEEcCCCeEEEEECCC
Confidence 8877666543222111 11 12344 566789999999999864
No 239
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.57 E-value=1.4e-06 Score=81.44 Aligned_cols=227 Identities=11% Similarity=0.006 Sum_probs=122.3
Q ss_pred CceEEeeccCceeeCC--CCCeEEEEeCCCCcEEEEEE-------ecccCcEEEEEecCCCCEEEEEeC-----CCcEEE
Q 014003 153 KNVCYHWLSGNCVKGD--ECRFWHSWFCGEGFTMLAKL-------EGHKKAVSGIALPLRSDKLYSGSR-----DGTVQL 218 (432)
Q Consensus 153 ~~~~~~~~~~~~~~g~--~d~~i~vw~~~~~~~~~~~l-------~~H~~~V~~l~~~~~~~~l~s~s~-----Dg~v~i 218 (432)
..+.+.+.+..+++.. .++.+++|.+.++ +. ..+ .+|-..+.+++++++++++++-.. ++.|.+
T Consensus 20 ~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g-~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~ 97 (343)
T 2qe8_A 20 GNITLTPDGRLFLSLHQFYQPEMQVAELTQD-GL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVA 97 (343)
T ss_dssp EEEEECTTSCEEEEECGGGCCSCSEEEEETT-EE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEE
T ss_pred ceEEECCCCCEEEEeCCCCCCceEEEEECCC-Ce-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEE
Confidence 3445555555555532 2232555555433 32 222 235678999999999886666543 578999
Q ss_pred EeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EE-EEEE---CCCc
Q 014003 219 WDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--ML-FAGA---QDGN 292 (432)
Q Consensus 219 Wd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~g~---~dg~ 292 (432)
||+.+++.+..+...... ..+...+..++++++ .+ ++.. .++.
T Consensus 98 ~d~~tg~~~~~~~~~~~~-------------------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~ 146 (343)
T 2qe8_A 98 WDTLNNQLSRVIYLPPPI-------------------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAA 146 (343)
T ss_dssp EETTTTEEEEEEECCTTT-------------------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred EECCCCeEEEEEECChhh-------------------------------cccccccceEEEecCCCEEEEEcCccCCCCe
Confidence 999998877766542210 011123345555532 33 3322 3566
Q ss_pred EEEEECCCCCCCccccceeeec-----------------------------cccCeEEEEEe--CCEEEEEeCCC-eEEE
Q 014003 293 ILVWKGIPNTQNPFQLAALLKG-----------------------------HTRPVTCLAVG--GKRLYSGSMDN-TIRV 340 (432)
Q Consensus 293 i~~wd~~~~~~~~~~~~~~~~~-----------------------------h~~~v~~l~~~--~~~l~sgs~dg-~I~v 340 (432)
|.+||+.+++. ...+.+ ....+..|+++ ++.|+.+..++ .|..
T Consensus 147 i~v~d~~~g~~-----~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~ 221 (343)
T 2qe8_A 147 LIRVDLQTGLA-----ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYR 221 (343)
T ss_dssp EEEEETTTCCE-----EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEE
T ss_pred EEEEECCCCCE-----EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEE
Confidence 66676654421 010100 01235678887 77888887766 5555
Q ss_pred EECC---CCc-----eEE--EecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCCCceeEEeec--cCCcceEEEee
Q 014003 341 WDLD---TLE-----AVM--TLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEEGNLEVAYTH--NEDHGVLALGG 406 (432)
Q Consensus 341 wd~~---~~~-----~~~--~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~ 406 (432)
++.. .+. ... ...++......++++ +.++++...++.|.+||..+++ +..+... ......+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~-~~~~~~~~~~~~p~~va~-- 298 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA-YKLLVTDEKLSWTDSFNF-- 298 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE-EEEEEECGGGSCEEEEEE--
T ss_pred EEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC-EEEEEECCceecCCeeEE--
Confidence 5532 111 000 111233344455555 7888888889999999984443 3333322 122334444
Q ss_pred eeCCCCCcEEEEEeCCC
Q 014003 407 LNDPDGNPVLICSCNDD 423 (432)
Q Consensus 407 ~~sp~g~~~l~sg~~Dg 423 (432)
+++|. ++++.+..+
T Consensus 299 --~~~g~-l~v~~~~~~ 312 (343)
T 2qe8_A 299 --GSDGY-LYFDCNQLH 312 (343)
T ss_dssp --CTTSC-EEEEECCGG
T ss_pred --CCCCc-EEEEeCccc
Confidence 78888 666665433
No 240
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.53 E-value=7.7e-05 Score=74.57 Aligned_cols=249 Identities=16% Similarity=0.066 Sum_probs=148.2
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEe--cccC--cEEEEEecC--CCCEEEEEeC------CCcEEEEeCCCCceeE
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLE--GHKK--AVSGIALPL--RSDKLYSGSR------DGTVQLWDCHTGQSAS 228 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~--~H~~--~V~~l~~~~--~~~~l~s~s~------Dg~v~iWd~~~~~~~~ 228 (432)
...++.+..|+.+..+|..++ +.+.... .+.. .+.+ +| .+..++.++. ++.|..+|.++|+.+-
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG-~~~W~~~~~~~~~~~~~~~---~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTG-KINWEVEVCDPKVGSTLTQ---APFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTC-CEEEEEECCCGGGTCBCCS---CCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCEEEEEECCCC-CEEEEecCCCCCccceecc---CCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 456777788999999999888 4444443 2211 1211 11 2345666554 7999999999999998
Q ss_pred EEeCCCce-----------------------------------------eeEEECCCEEEEEcC----------------
Q 014003 229 VINLGAEV-----------------------------------------GSLICEGPWVFVGMP---------------- 251 (432)
Q Consensus 229 ~~~~~~~~-----------------------------------------~~~~~~~~~l~~~~~---------------- 251 (432)
.+...... ..+......+..+..
T Consensus 191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence 88754322 111223345554431
Q ss_pred -CeEEEEEccCCceEee-c--CC--------cCCEE-EEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeecc
Q 014003 252 -NVVKAWHIESSAEFSL-D--GP--------VGEVY-SMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH 315 (432)
Q Consensus 252 -~~i~vwd~~~~~~~~~-~--~~--------~~~v~-~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h 315 (432)
+.|..+|.++++..-. + .+ ..++. ....... .++.++.+|.++++|..+++.. ...+..
T Consensus 271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~-----w~~~~~ 345 (571)
T 2ad6_A 271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI-----VAEKVD 345 (571)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE-----EEEESS
T ss_pred EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEE-----eeeccc
Confidence 2589999999886522 1 11 12222 2222332 4677889999999999887531 111100
Q ss_pred c-------------cCe--------------------------EEEEEe--CCEEEEEe---------------------
Q 014003 316 T-------------RPV--------------------------TCLAVG--GKRLYSGS--------------------- 333 (432)
Q Consensus 316 ~-------------~~v--------------------------~~l~~~--~~~l~sgs--------------------- 333 (432)
. .++ ..++++ ...+++.+
T Consensus 346 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~ 425 (571)
T 2ad6_A 346 PAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFV 425 (571)
T ss_dssp TTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred CCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccc
Confidence 0 000 123444 34554442
Q ss_pred ----------------CCCeEEEEECCCCceEEEecCCCCCc-EEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeecc
Q 014003 334 ----------------MDNTIRVWDLDTLEAVMTLNGHTDAP-MSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN 396 (432)
Q Consensus 334 ----------------~dg~I~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 396 (432)
.+|.|..||+.+++.+.++....... ..+...+..++.++.||.|+.+|.++++.+..+....
T Consensus 426 g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 426 GATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp CEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred cccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 35899999999999988876332211 1233347888889999999999999999888776543
Q ss_pred CCcceEEEeeeeCCCCCcEEEEEeC
Q 014003 397 EDHGVLALGGLNDPDGNPVLICSCN 421 (432)
Q Consensus 397 ~~~~~~~~~~~~sp~g~~~l~sg~~ 421 (432)
........ +.++|+.++++.+.
T Consensus 506 ~~~~~p~~---~~~~G~~yv~~~~G 527 (571)
T 2ad6_A 506 GGIGSPMT---YSFKGKQYIGSMYG 527 (571)
T ss_dssp CCCSCCEE---EEETTEEEEEEEEC
T ss_pred CcEeeeEE---EEECCEEEEEEECC
Confidence 32221111 24678755555443
No 241
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.51 E-value=0.00017 Score=75.13 Aligned_cols=258 Identities=10% Similarity=0.046 Sum_probs=152.8
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEE-EecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC--------CC
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAK-LEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL--------GA 234 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~-l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~--------~~ 234 (432)
+..|..++-+..|+..++. .... ...+...|.++...+++.+.+ |+.++-+..||..+++....... ..
T Consensus 186 lwigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (795)
T 4a2l_A 186 IYIGTSTDGLYTYSITQKT-FEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSN 263 (795)
T ss_dssp EEEEESSSCEEEEETTTCC-EEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCS
T ss_pred EEEEECCCCEEEEeCCCCe-EEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCC
Confidence 3334444447778876542 1111 112356789998877776555 44444488999887655433221 12
Q ss_pred ceeeEEE--CCCEEEEEcCCeEEEEEccCCceEeecC--------CcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCC
Q 014003 235 EVGSLIC--EGPWVFVGMPNVVKAWHIESSAEFSLDG--------PVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQ 303 (432)
Q Consensus 235 ~~~~~~~--~~~~l~~~~~~~i~vwd~~~~~~~~~~~--------~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~ 303 (432)
.+.++.. ++.+.++... .|.+++..++....... ....|.++..+++ .+.+|+.++-|..|+.....-
T Consensus 264 ~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~ 342 (795)
T 4a2l_A 264 YIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRF 342 (795)
T ss_dssp BEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSS
T ss_pred eEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccc
Confidence 3455554 4555555544 78899988776543321 2357999999887 888999999999998765431
Q ss_pred Cccccceee----eccccCeEEEEEe-CCEEEEEeCCCeEEEEECCCCceEEEecC--------CCCCcEEEEEc--CCE
Q 014003 304 NPFQLAALL----KGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLNG--------HTDAPMSLLCW--DQY 368 (432)
Q Consensus 304 ~~~~~~~~~----~~h~~~v~~l~~~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~~--------~~~~v~~~~~~--~~~ 368 (432)
...... ......|.++..+ ...|..|+.++-|..||..+++...-... ....|.++..+ ++.
T Consensus 343 ---~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~ 419 (795)
T 4a2l_A 343 ---KNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSL 419 (795)
T ss_dssp ---EEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTE
T ss_pred ---eEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCE
Confidence 111110 1124568899887 55678888888899999887665433211 23457788776 343
Q ss_pred EEEEeCCCcEEEEEcCCCCceeEEeeccC-CcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 369 LLSCSLDNTIKVWIMTEEGNLEVAYTHNE-DHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 369 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
|..|+.++-|..||..+++.. .+..... .......+...+++|. +.+ |+.+ -|.+||.+
T Consensus 420 lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~-lwi-gt~~-Gl~~~~~~ 479 (795)
T 4a2l_A 420 VYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGN-LWL-GTLS-ALVRFNPE 479 (795)
T ss_dssp EEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSC-EEE-EESS-CEEEEETT
T ss_pred EEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCC-EEE-EecC-ceeEEeCC
Confidence 888888888999998776432 2221000 0011122233467787 444 4444 47777754
No 242
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.49 E-value=8.9e-05 Score=74.22 Aligned_cols=183 Identities=15% Similarity=0.103 Sum_probs=110.5
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCc-E--------EEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKA-V--------SGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~-V--------~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~ 233 (432)
.+..++.++.|..+|..++ +.+..+...... . ..+++ .+..++.++.|+.|..+|.++|+.+-.....
T Consensus 70 ~vyv~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 70 VIYVTASYSRLFALDAKTG-KRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEEETTTEEEEEESSSC-CEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEEcCCCCEEEEECCCC-cEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 3333333334888888887 445555433221 0 11222 3567888999999999999999999887754
Q ss_pred Cc-----e--eeEEECC----C-EEEEEc-------CCeEEEEEccCCceEeecCCc-CCE-------------------
Q 014003 234 AE-----V--GSLICEG----P-WVFVGM-------PNVVKAWHIESSAEFSLDGPV-GEV------------------- 274 (432)
Q Consensus 234 ~~-----~--~~~~~~~----~-~l~~~~-------~~~i~vwd~~~~~~~~~~~~~-~~v------------------- 274 (432)
.. + ..+..++ + .++++. ++.|..+|.++++..-..... ..+
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 31 1 1122333 1 454442 689999999998865221110 000
Q ss_pred ----------------------EEEEEcCC--EEEEEEC--------------------C----CcEEEEECCCCCCCcc
Q 014003 275 ----------------------YSMVVANE--MLFAGAQ--------------------D----GNILVWKGIPNTQNPF 306 (432)
Q Consensus 275 ----------------------~~l~~~~~--~l~~g~~--------------------d----g~i~~wd~~~~~~~~~ 306 (432)
..++++++ +++++.. | +.|..+|..+++.
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~--- 303 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV--- 303 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE---
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE---
Confidence 12344443 6665553 2 6899999998863
Q ss_pred ccceeee--ccc--------cCeEEEEE---eC---CEEEEEeCCCeEEEEECCCCceEEEecC
Q 014003 307 QLAALLK--GHT--------RPVTCLAV---GG---KRLYSGSMDNTIRVWDLDTLEAVMTLNG 354 (432)
Q Consensus 307 ~~~~~~~--~h~--------~~v~~l~~---~~---~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 354 (432)
+-.++ .|. .++. +.. +| ..++.++.+|.++++|.++|+.+..+..
T Consensus 304 --~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 304 --KWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp --EEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred --EEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 22222 221 2232 222 35 3788899999999999999999877654
No 243
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.48 E-value=1.6e-05 Score=74.22 Aligned_cols=204 Identities=13% Similarity=0.092 Sum_probs=122.0
Q ss_pred EEEEEEecccCcEEEEEecCCCCEEEEEeC--CCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEcc
Q 014003 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSR--DGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIE 260 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~--Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~ 260 (432)
+.+..+. ..+..++++++|+.+++... ++.++||.+.+++. ..+....
T Consensus 10 ~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~-------------------------- 59 (343)
T 2qe8_A 10 EVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQS-------------------------- 59 (343)
T ss_dssp EEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCC--------------------------
T ss_pred EEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcc--------------------------
Confidence 4444443 78999999999999888642 34355565543321 1111000
Q ss_pred CCceEeecCCcCCEEEEEEcCC-EEEEEEC------CCcEEEEECCCCCCCccccceeeec------cccCeEEEEEe--
Q 014003 261 SSAEFSLDGPVGEVYSMVVANE-MLFAGAQ------DGNILVWKGIPNTQNPFQLAALLKG------HTRPVTCLAVG-- 325 (432)
Q Consensus 261 ~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~------dg~i~~wd~~~~~~~~~~~~~~~~~------h~~~v~~l~~~-- 325 (432)
.....+...+..++++++ .|++... ++.|.+||+.+++. +..+.. +......++++
T Consensus 60 ----~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~-----~~~~~~~~~~~~~~~~~~~v~vd~~ 130 (343)
T 2qe8_A 60 ----GNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQL-----SRVIYLPPPITLSNSFVNDLAVDLI 130 (343)
T ss_dssp ----SSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEE-----EEEEECCTTTSCTTCCCCEEEEETT
T ss_pred ----cCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeE-----EEEEECChhhcccccccceEEEecC
Confidence 001235567889999987 5555443 57899999987642 222221 22345788887
Q ss_pred CCEEEEE-e---CCCeEEEEECCCCceEEEecCCC-----------------------------CCcEEEEEc--CCEEE
Q 014003 326 GKRLYSG-S---MDNTIRVWDLDTLEAVMTLNGHT-----------------------------DAPMSLLCW--DQYLL 370 (432)
Q Consensus 326 ~~~l~sg-s---~dg~I~vwd~~~~~~~~~~~~~~-----------------------------~~v~~~~~~--~~~l~ 370 (432)
+..++.+ . .++.|.+||+.+++....+.+|. ..+..++++ ++.|+
T Consensus 131 ~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly 210 (343)
T 2qe8_A 131 HNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLY 210 (343)
T ss_dssp TTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEE
T ss_pred CCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEE
Confidence 4455444 4 57899999999888877665431 123556666 56777
Q ss_pred EEeCCC-cEEEEEcC---CCC----c-e--eEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 371 SCSLDN-TIKVWIMT---EEG----N-L--EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 371 s~s~dg-~i~iwd~~---~~~----~-~--~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
.+..++ .+..++.. ... . . ....++......+++ +++|. ++++...++.|.+||.
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~----d~~G~-l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI----DKDHN-IYVGDLAHSAIGVITS 276 (343)
T ss_dssp EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE----CTTCC-EEEEEGGGTEEEEEET
T ss_pred EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE----CCCCC-EEEEccCCCeEEEEEC
Confidence 776665 44444322 110 0 0 011122233445666 78998 8888888999999996
No 244
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.48 E-value=6.5e-06 Score=77.30 Aligned_cols=233 Identities=6% Similarity=-0.079 Sum_probs=143.4
Q ss_pred ceEEeeccCceeeC----------CCCCeEEEEeCCCCcEEEEEEecc-------cCcEEEEEecCCCCEEEEEeC--CC
Q 014003 154 NVCYHWLSGNCVKG----------DECRFWHSWFCGEGFTMLAKLEGH-------KKAVSGIALPLRSDKLYSGSR--DG 214 (432)
Q Consensus 154 ~~~~~~~~~~~~~g----------~~d~~i~vw~~~~~~~~~~~l~~H-------~~~V~~l~~~~~~~~l~s~s~--Dg 214 (432)
.+.+.+....+..+ ..++.|.+||..+. +.+.++..+ ......++|+|||++|+.+.. +.
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~-~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~ 147 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF-LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA 147 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC-CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC-CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCC
Confidence 45666666654444 35789999999988 667777543 123567899999999999875 46
Q ss_pred cEEE--EeCCCCceeEEEeCCCceeeEEECC--CEEEEEcCCeEEEEEccC-----CceEe-----ecCCcCCEEEEEEc
Q 014003 215 TVQL--WDCHTGQSASVINLGAEVGSLICEG--PWVFVGMPNVVKAWHIES-----SAEFS-----LDGPVGEVYSMVVA 280 (432)
Q Consensus 215 ~v~i--Wd~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~i~vwd~~~-----~~~~~-----~~~~~~~v~~l~~~ 280 (432)
.|.+ +|+.+ +..+...... .+.+++ .+++.+.++.+.+.++++ ++... ..-...+. . ...
T Consensus 148 ~v~V~~iD~~t---v~~i~v~~~~-~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~-~-~~~ 221 (368)
T 1mda_H 148 AAGLSVPGASD---DQLTKSASCF-HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA-Q-ANY 221 (368)
T ss_dssp EEEEEETTTEE---EEEEECSSCC-CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE-E-ETT
T ss_pred eEEEEEEchhh---ceEEECCCce-EEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc-c-ccc
Confidence 7888 99987 5555543321 223333 344455788888888876 32211 00011222 2 222
Q ss_pred CCEEEEEECCCcEEEEECCCCCCCccccceeee------------ccccCeEEEEEeCCEEEEEeC---------CCeEE
Q 014003 281 NEMLFAGAQDGNILVWKGIPNTQNPFQLAALLK------------GHTRPVTCLAVGGKRLYSGSM---------DNTIR 339 (432)
Q Consensus 281 ~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~------------~h~~~v~~l~~~~~~l~sgs~---------dg~I~ 339 (432)
+..++..+. +.+.+.|....... ....+. ........+..+++.++++.. ++.+.
T Consensus 222 ~~~~~~vs~-~~V~viD~~~~~~~---v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ 297 (368)
T 1mda_H 222 PGMLVWAVA-SSILQGDIPAAGAT---MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297 (368)
T ss_dssp TTEEEECBS-SCCEEEECCSSCCE---EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred CCEEEEEcC-CEEEEEECCCCcce---EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE
Confidence 235555556 99999998654311 111111 011111223334777776543 23566
Q ss_pred EEECCCCceEEEecCCCCCcEEEEEc--CC-EEEEEe-CCCcEEEEEcCCCCceeEEeeccCC
Q 014003 340 VWDLDTLEAVMTLNGHTDAPMSLLCW--DQ-YLLSCS-LDNTIKVWIMTEEGNLEVAYTHNED 398 (432)
Q Consensus 340 vwd~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~ 398 (432)
++|+.+++.+.++.... ....+.++ ++ .+++.. .++.|.++|+.+.+.+..+.....+
T Consensus 298 ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P 359 (368)
T 1mda_H 298 SVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359 (368)
T ss_dssp EEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC
T ss_pred EEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCC
Confidence 99999999998886443 45667776 55 566666 5999999999999888777654443
No 245
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.47 E-value=3.4e-05 Score=67.93 Aligned_cols=190 Identities=11% Similarity=0.018 Sum_probs=121.4
Q ss_pred ceeEEEeCCCce--eeEEECCCEEEE--EcCC--eEEEEEccCCceEeecCCcCCE--EEEEEcCCEEEE-EECCCcEEE
Q 014003 225 QSASVINLGAEV--GSLICEGPWVFV--GMPN--VVKAWHIESSAEFSLDGPVGEV--YSMVVANEMLFA-GAQDGNILV 295 (432)
Q Consensus 225 ~~~~~~~~~~~~--~~~~~~~~~l~~--~~~~--~i~vwd~~~~~~~~~~~~~~~v--~~l~~~~~~l~~-g~~dg~i~~ 295 (432)
+.+.++++.... ..+..++..+.. +.++ .|+++|+++++........... ..+++.++.+.. .-.++.+.+
T Consensus 32 ~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEE
Confidence 355666655443 344433344443 3444 8999999999976544333333 457777774444 446889999
Q ss_pred EECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCC-----CCcEEEEEcCCEEE
Q 014003 296 WKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT-----DAPMSLLCWDQYLL 370 (432)
Q Consensus 296 wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~l~ 370 (432)
||..+.+ .+.++.... .-..++.+++.|+.+..++.|.++|.++.+.+.++.... ..+..+.+.+..|.
T Consensus 112 ~D~~t~~-----~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~ly 185 (262)
T 3nol_A 112 WNIRNLR-----QVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIF 185 (262)
T ss_dssp EETTTCC-----EEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEE
T ss_pred EECccCc-----EEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEE
Confidence 9998864 455555332 224677888877777778899999999999988876432 22334566644555
Q ss_pred EEe-CCCcEEEEEcCCCCceeEEeeccC--------CcceEEEeeeeCCCCCcEEEEEe
Q 014003 371 SCS-LDNTIKVWIMTEEGNLEVAYTHNE--------DHGVLALGGLNDPDGNPVLICSC 420 (432)
Q Consensus 371 s~s-~dg~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~sp~g~~~l~sg~ 420 (432)
+.. .++.|.+.|..+++.+..+....- ....+.-..+++|+++.++++|-
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 554 688999999999988777664210 11112223344899887777774
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.47 E-value=0.00019 Score=73.19 Aligned_cols=255 Identities=12% Similarity=0.064 Sum_probs=149.3
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEeccc-CcEEEEEecC--CCCEEEEEeC------CCcEEEEeCCCCceeEEEe
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHK-KAVSGIALPL--RSDKLYSGSR------DGTVQLWDCHTGQSASVIN 231 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~-~~V~~l~~~~--~~~~l~s~s~------Dg~v~iWd~~~~~~~~~~~ 231 (432)
...++.+..|+.|..+|..++ +.+..+.... .....+.-+| .+..++.+.. +|.|..+|.++|+.+-.+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG-~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTG-KAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTC-CEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCC-CEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 456777888999999999998 5555554321 0000011111 1345555543 5899999999999998886
Q ss_pred CC--Cce--------------------------------eeEEECCCEEEEEc-CC-------------------eEEEE
Q 014003 232 LG--AEV--------------------------------GSLICEGPWVFVGM-PN-------------------VVKAW 257 (432)
Q Consensus 232 ~~--~~~--------------------------------~~~~~~~~~l~~~~-~~-------------------~i~vw 257 (432)
.. .+. ..+......++.+. ++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 42 110 11222455666553 32 48999
Q ss_pred EccCCceEe-ecC--Cc-------CCE--EEEEEcCC---EEEEEECCCcEEEEECCCCCCCcccc------ceeeeccc
Q 014003 258 HIESSAEFS-LDG--PV-------GEV--YSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQL------AALLKGHT 316 (432)
Q Consensus 258 d~~~~~~~~-~~~--~~-------~~v--~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~------~~~~~~h~ 316 (432)
|.++++..- ... +. .+. ..+.+... .++.++.+|.++++|..+++...... ...+....
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~ 355 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence 999998652 221 11 222 23444443 58889999999999998886310000 00000000
Q ss_pred -cC------------------------eEEEEEe--CCEEEEE------------------------------------e
Q 014003 317 -RP------------------------VTCLAVG--GKRLYSG------------------------------------S 333 (432)
Q Consensus 317 -~~------------------------v~~l~~~--~~~l~sg------------------------------------s 333 (432)
.+ -..++++ ...++.. .
T Consensus 356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~ 435 (668)
T 1kv9_A 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (668)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence 00 0013444 2333321 1
Q ss_pred CCCeEEEEECCCCceEEEecCCCCCc-EEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcc-eEEEeeeeCCC
Q 014003 334 MDNTIRVWDLDTLEAVMTLNGHTDAP-MSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHG-VLALGGLNDPD 411 (432)
Q Consensus 334 ~dg~I~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~ 411 (432)
.+|.|..||+.+++.+.+...+.... ..+...+.+++.++.|+.++.||.++++.+..+........ -+.+ ..+
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~----~~~ 511 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTF----ELA 511 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE----EET
T ss_pred ccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEE----EEC
Confidence 34889999999999988876443322 34455589999999999999999999998887765432221 1222 346
Q ss_pred CCcEEEEEe
Q 014003 412 GNPVLICSC 420 (432)
Q Consensus 412 g~~~l~sg~ 420 (432)
|+.+++.++
T Consensus 512 G~~yva~~~ 520 (668)
T 1kv9_A 512 GRQYVAIMA 520 (668)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 664554443
No 247
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.46 E-value=0.00011 Score=73.50 Aligned_cols=251 Identities=10% Similarity=0.004 Sum_probs=144.9
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEeccc--C--cEEE-EEecCCCCEEEEEe------CCCcEEEEeCCCCceeEEEeC
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEGHK--K--AVSG-IALPLRSDKLYSGS------RDGTVQLWDCHTGQSASVINL 232 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~H~--~--~V~~-l~~~~~~~~l~s~s------~Dg~v~iWd~~~~~~~~~~~~ 232 (432)
++.+..|+.+..+|..++ +.+....... . .+++ -.+ .++ .++.++ .+|.|..+|.++|+.+-.+..
T Consensus 124 V~v~t~dg~l~AlDa~TG-~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETG-ETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEECTTSEEEEEETTTC-CEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEcCCCEEEEEECCCC-CEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 777888999999999888 4444433211 0 1111 011 134 455554 489999999999999988875
Q ss_pred CCcee-----------------------------------------eEEECCCEEEEEc-C----------------CeE
Q 014003 233 GAEVG-----------------------------------------SLICEGPWVFVGM-P----------------NVV 254 (432)
Q Consensus 233 ~~~~~-----------------------------------------~~~~~~~~l~~~~-~----------------~~i 254 (432)
..+.. .+.....+++.+. + +.|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 53321 1223445555542 2 379
Q ss_pred EEEEccCCceEe---ecCC--------cCCEE-EEE-EcC---CEEEEEECCCcEEEEECCCCCCCccccce-------e
Q 014003 255 KAWHIESSAEFS---LDGP--------VGEVY-SMV-VAN---EMLFAGAQDGNILVWKGIPNTQNPFQLAA-------L 311 (432)
Q Consensus 255 ~vwd~~~~~~~~---~~~~--------~~~v~-~l~-~~~---~~l~~g~~dg~i~~wd~~~~~~~~~~~~~-------~ 311 (432)
..+|.++++..- ...+ ..++. .+. ... ..++.++.+|.++++|..+++........ .
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 999999998652 2222 12222 111 223 25677889999999999887631000000 0
Q ss_pred ee-ccccCe--------------------------EEEEEe--CCEEEEE------------------------------
Q 014003 312 LK-GHTRPV--------------------------TCLAVG--GKRLYSG------------------------------ 332 (432)
Q Consensus 312 ~~-~h~~~v--------------------------~~l~~~--~~~l~sg------------------------------ 332 (432)
+. ....++ ..++++ ..++++.
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 00 000000 012222 1222211
Q ss_pred ---e------CCCeEEEEECCCCceEEEecCCCCCc-EEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceE
Q 014003 333 ---S------MDNTIRVWDLDTLEAVMTLNGHTDAP-MSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVL 402 (432)
Q Consensus 333 ---s------~dg~I~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 402 (432)
+ .+|.|..||+.+++.+.+........ -.+...+..++.++.|+.++.||.++++.+.............
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P 520 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP 520 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred CCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEecc
Confidence 1 45899999999999988875221111 1244457888889999999999999999888776543332221
Q ss_pred EEeeeeCCCCCcEEEEEe
Q 014003 403 ALGGLNDPDGNPVLICSC 420 (432)
Q Consensus 403 ~~~~~~sp~g~~~l~sg~ 420 (432)
. .+..+|+.++++.+
T Consensus 521 ~---~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 521 M---TYTHKGTQYVAIYY 535 (599)
T ss_dssp E---EEEETTEEEEEEEE
T ss_pred E---EEEeCCEEEEEEEc
Confidence 1 12467876665543
No 248
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.44 E-value=0.00067 Score=60.41 Aligned_cols=233 Identities=10% Similarity=0.051 Sum_probs=136.9
Q ss_pred CeEEEEeCCCCcEE----EEEEecccCcEEEEEecCCCCEEE-EEeCCCcEEEEeCCCCceeEEEeCC-CceeeEEE--C
Q 014003 171 RFWHSWFCGEGFTM----LAKLEGHKKAVSGIALPLRSDKLY-SGSRDGTVQLWDCHTGQSASVINLG-AEVGSLIC--E 242 (432)
Q Consensus 171 ~~i~vw~~~~~~~~----~~~l~~H~~~V~~l~~~~~~~~l~-s~s~Dg~v~iWd~~~~~~~~~~~~~-~~~~~~~~--~ 242 (432)
+.|+.++++..... ...+......+.+++|+++++.|+ +-..++.|..+++..+......... .....+.. +
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~ 89 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL 89 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEec
Confidence 35777777654210 111222235678999998765555 4455789999999876554444322 23344443 4
Q ss_pred CCEEEEE--cCCeEEEEEccCCceEeec-CCcCCEEEEEEcCC--EEEEEEC---CCcEEEEECCCCCCCccccceeeec
Q 014003 243 GPWVFVG--MPNVVKAWHIESSAEFSLD-GPVGEVYSMVVANE--MLFAGAQ---DGNILVWKGIPNTQNPFQLAALLKG 314 (432)
Q Consensus 243 ~~~l~~~--~~~~i~vwd~~~~~~~~~~-~~~~~v~~l~~~~~--~l~~g~~---dg~i~~wd~~~~~~~~~~~~~~~~~ 314 (432)
+..+..+ ..+.|.+++++........ ........++++++ .++.+.. .+.|..+++..... +.+ ...
T Consensus 90 ~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~---~~~--~~~ 164 (267)
T 1npe_A 90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RIL--AQD 164 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EEE--ECT
T ss_pred CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc---EEE--EEC
Confidence 4555544 4678999998765432222 22246688999874 5555554 36888888764321 111 112
Q ss_pred cccCeEEEEEe--CCEEEEEe-CCCeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEe-CCCcEEEEEcCCCCcee
Q 014003 315 HTRPVTCLAVG--GKRLYSGS-MDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCS-LDNTIKVWIMTEEGNLE 390 (432)
Q Consensus 315 h~~~v~~l~~~--~~~l~sgs-~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~ 390 (432)
.......++++ ++.|+.+. ..+.|.++|.........+.. ......++..+..|+.+. ..+.|.++|..+++.+.
T Consensus 165 ~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMD 243 (267)
T ss_dssp TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceE
Confidence 22346778886 56665544 568999999986544443332 233456666766655555 56899999998887766
Q ss_pred EEeeccC-CcceEEEeeeeCCCCC
Q 014003 391 VAYTHNE-DHGVLALGGLNDPDGN 413 (432)
Q Consensus 391 ~~~~~~~-~~~~~~~~~~~sp~g~ 413 (432)
.+..... ....+++ .|++.
T Consensus 244 ~i~~g~~~~p~gi~~----~~~~~ 263 (267)
T 1npe_A 244 TFHPHKQTRLYGITI----ALSQC 263 (267)
T ss_dssp EECCSSCCCCCCEEE----ECSCC
T ss_pred EEccccccccceeee----cCccC
Confidence 6653321 2344444 45554
No 249
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.40 E-value=0.00095 Score=69.56 Aligned_cols=256 Identities=11% Similarity=0.057 Sum_probs=151.3
Q ss_pred eeeCCCCCeEEEEeCCCCcEEEEEEec-------ccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC----
Q 014003 164 CVKGDECRFWHSWFCGEGFTMLAKLEG-------HKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL---- 232 (432)
Q Consensus 164 ~~~g~~d~~i~vw~~~~~~~~~~~l~~-------H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~---- 232 (432)
+-.|..++-+..|+..++ +....... ....|.++...++|.+.+ |+.+ -|.+||..+++.......
T Consensus 228 lwigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~ 304 (795)
T 4a2l_A 228 IWVATEGAGLFLINPKTK-EIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVEN 304 (795)
T ss_dssp EEEEEBSSCEEEEETTTT-EEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTST
T ss_pred EEEEECCCCeEEEeCCCC-eEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCC
Confidence 333333334778887665 32222111 136799999988887555 4455 589999887765443221
Q ss_pred ----CCceeeEEE--CCCEEEEEcCCeEEEEEccCCceEeecC-------CcCCEEEEEEcCC-EEEEEECCCcEEEEEC
Q 014003 233 ----GAEVGSLIC--EGPWVFVGMPNVVKAWHIESSAEFSLDG-------PVGEVYSMVVANE-MLFAGAQDGNILVWKG 298 (432)
Q Consensus 233 ----~~~~~~~~~--~~~~l~~~~~~~i~vwd~~~~~~~~~~~-------~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~ 298 (432)
...+.++.. ++.+-++..++.|..++........... ....|.++..+++ .+.+|+.++-|..||.
T Consensus 305 ~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~ 384 (795)
T 4a2l_A 305 GSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNP 384 (795)
T ss_dssp TSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECT
T ss_pred CCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcC
Confidence 123445543 5666666677889999877654332211 2456899998877 8888999988999998
Q ss_pred CCCCCCccccceee------eccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEec----CCCCCcEEEEEc-
Q 014003 299 IPNTQNPFQLAALL------KGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN----GHTDAPMSLLCW- 365 (432)
Q Consensus 299 ~~~~~~~~~~~~~~------~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~----~~~~~v~~~~~~- 365 (432)
.++.- ...... ......|.++..+ ++.|..|+.++-|.+||.++++...-.. .....|.++..+
T Consensus 385 ~~~~~---~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~ 461 (795)
T 4a2l_A 385 ITQRF---TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG 461 (795)
T ss_dssp TTCCE---EEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS
T ss_pred CCCcE---EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC
Confidence 76531 111100 0124578899887 4448888888889999998876543322 123457787776
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceeEEeec---cCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 366 DQYLLSCSLDNTIKVWIMTEEGNLEVAYTH---NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 366 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
...|..|+. +.+.+||..+.+.. .+... .........+...+++|. +.+ |+. +-|..||.
T Consensus 462 ~g~lwigt~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~-lWi-gt~-~Gl~~~~~ 524 (795)
T 4a2l_A 462 EGNLWLGTL-SALVRFNPEQRSFT-TIEKEKDGTPVVSKQITTLFRDSHKR-LWI-GGE-EGLSVFKQ 524 (795)
T ss_dssp SSCEEEEES-SCEEEEETTTTEEE-ECCBCTTCCBCCCCCEEEEEECTTCC-EEE-EES-SCEEEEEE
T ss_pred CCCEEEEec-CceeEEeCCCCeEE-EccccccccccCCceEEEEEECCCCC-EEE-EeC-CceEEEeC
Confidence 345555665 45888998765322 22111 000011112233478888 444 334 44666664
No 250
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.38 E-value=0.00028 Score=67.08 Aligned_cols=207 Identities=11% Similarity=0.018 Sum_probs=130.7
Q ss_pred ceeeCCCCCeEEEEeCCCC---cEEEEEEe------c-ccCcEEEEEecCCCCEEEEEeCC------CcEEEEeCCCCce
Q 014003 163 NCVKGDECRFWHSWFCGEG---FTMLAKLE------G-HKKAVSGIALPLRSDKLYSGSRD------GTVQLWDCHTGQS 226 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~---~~~~~~l~------~-H~~~V~~l~~~~~~~~l~s~s~D------g~v~iWd~~~~~~ 226 (432)
.++.|..++.|.|+|+.+. .+..++++ . -...-..+...|+| .++++..+ |.|.+.|.++.+.
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 4677888899999998543 46666663 1 11245567788999 77777666 7899999999999
Q ss_pred eEEEeCCCce------eeEEECCCEEEEEc--------------------CCeEEEEEccCCceEeecCC---cCCEEEE
Q 014003 227 ASVINLGAEV------GSLICEGPWVFVGM--------------------PNVVKAWHIESSAEFSLDGP---VGEVYSM 277 (432)
Q Consensus 227 ~~~~~~~~~~------~~~~~~~~~l~~~~--------------------~~~i~vwd~~~~~~~~~~~~---~~~v~~l 277 (432)
+..+...... ....++++.++++. .+.|.+||+.+++....... ......+
T Consensus 177 ~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i 256 (462)
T 2ece_A 177 LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALEL 256 (462)
T ss_dssp EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEE
T ss_pred EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcccee
Confidence 9998754221 12356778777774 78999999998765432221 1233445
Q ss_pred EE--cCC--EEEEEE------CCCcEEEEECCCCCCCccccceee--ec----------------cccCeEEEEEe--CC
Q 014003 278 VV--ANE--MLFAGA------QDGNILVWKGIPNTQNPFQLAALL--KG----------------HTRPVTCLAVG--GK 327 (432)
Q Consensus 278 ~~--~~~--~l~~g~------~dg~i~~wd~~~~~~~~~~~~~~~--~~----------------h~~~v~~l~~~--~~ 327 (432)
.+ +|+ ++++++ .+++|.+|....+. ++..+.+ .. -......|.++ ++
T Consensus 257 ~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~---~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGr 333 (462)
T 2ece_A 257 RPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK---WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDK 333 (462)
T ss_dssp EECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE---EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSC
T ss_pred EeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc---eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCC
Confidence 45 777 444444 67788877665432 2222211 00 01234566665 88
Q ss_pred EEEEEeC-CCeEEEEECC---CCceEEEecCC-----------C---CCcEEEEE--cCCEEEEEe
Q 014003 328 RLYSGSM-DNTIRVWDLD---TLEAVMTLNGH-----------T---DAPMSLLC--WDQYLLSCS 373 (432)
Q Consensus 328 ~l~sgs~-dg~I~vwd~~---~~~~~~~~~~~-----------~---~~v~~~~~--~~~~l~s~s 373 (432)
+|+++.. .+.|.+||+. +.+.+..+... . +....+.+ +|++|+++.
T Consensus 334 fLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 334 FLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 8887765 6899999985 33555555432 1 01334444 488888887
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.32 E-value=0.00037 Score=64.09 Aligned_cols=229 Identities=8% Similarity=-0.006 Sum_probs=130.1
Q ss_pred CCceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEe------------------cccCcEEEEEecC-CCCEEEEEeC
Q 014003 152 PKNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLE------------------GHKKAVSGIALPL-RSDKLYSGSR 212 (432)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~------------------~H~~~V~~l~~~~-~~~~l~s~s~ 212 (432)
++.++.......+.++..++.|..|+..++........ .....+.++++.+ +++ |+.+..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence 34566555555577777889999999876422111110 0123578999997 554 555555
Q ss_pred CCcEEEEeCCCCceeEEEe--CC---CceeeEE--E-CCCEEEEEcC------------------CeEEEEEccCCceEe
Q 014003 213 DGTVQLWDCHTGQSASVIN--LG---AEVGSLI--C-EGPWVFVGMP------------------NVVKAWHIESSAEFS 266 (432)
Q Consensus 213 Dg~v~iWd~~~~~~~~~~~--~~---~~~~~~~--~-~~~~l~~~~~------------------~~i~vwd~~~~~~~~ 266 (432)
.+.|..+|..+++...... .. .....+. . ++.+.++... +.|..+|..+++...
T Consensus 100 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 179 (322)
T 2fp8_A 100 YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL 179 (322)
T ss_dssp TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence 5558889987654322211 11 1122333 3 5566655432 567788877665433
Q ss_pred ecCCcCCEEEEEEcCC--EEEEE-ECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeC-------
Q 014003 267 LDGPVGEVYSMVVANE--MLFAG-AQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSM------- 334 (432)
Q Consensus 267 ~~~~~~~v~~l~~~~~--~l~~g-~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~------- 334 (432)
..........++++++ .++++ ...+.|..|++........+....+ .. ...++++ |++.++...
T Consensus 180 ~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 180 LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEEEEecCccccccc
Confidence 2222233456888877 45555 5568999999875432111222211 22 5677887 665555443
Q ss_pred ---CCeEEEEECCCCceEEEecCCC----CCcEEEEEcCCEE-EEEeCCCcEEEEEcCCC
Q 014003 335 ---DNTIRVWDLDTLEAVMTLNGHT----DAPMSLLCWDQYL-LSCSLDNTIKVWIMTEE 386 (432)
Q Consensus 335 ---dg~I~vwd~~~~~~~~~~~~~~----~~v~~~~~~~~~l-~s~s~dg~i~iwd~~~~ 386 (432)
.+.|..+|.. ++.+..+.... ..+..+...+..| ++....+.|.++++...
T Consensus 256 ~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 256 GRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp SCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC---
T ss_pred CCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecccc
Confidence 4678999974 77777775432 2355565564444 44456778888887543
No 252
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.27 E-value=0.00038 Score=69.66 Aligned_cols=82 Identities=15% Similarity=0.035 Sum_probs=58.2
Q ss_pred CCeEEEEECCCCceEEEecCCCCCc-EEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcce-EEEeeeeCCCC
Q 014003 335 DNTIRVWDLDTLEAVMTLNGHTDAP-MSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGV-LALGGLNDPDG 412 (432)
Q Consensus 335 dg~I~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~sp~g 412 (432)
+|.|..||+.+++.+.+........ ..+...+.+++.++.|+.++.||.++++.+..+......... +.+ ..+|
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y----~~~G 540 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITW----EQDG 540 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE----EETT
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEE----EECC
Confidence 6899999999999988776432211 123345788999999999999999999998887764433221 232 4688
Q ss_pred CcEEEEEe
Q 014003 413 NPVLICSC 420 (432)
Q Consensus 413 ~~~l~sg~ 420 (432)
+.++++.+
T Consensus 541 ~qYv~~~~ 548 (582)
T 1flg_A 541 EQYLGVTV 548 (582)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEc
Confidence 86666553
No 253
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.23 E-value=0.0018 Score=67.29 Aligned_cols=232 Identities=11% Similarity=0.051 Sum_probs=140.5
Q ss_pred cCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEe----------CCCceeeEEE--CCCEEEEEcCCeEEEEEc
Q 014003 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN----------LGAEVGSLIC--EGPWVFVGMPNVVKAWHI 259 (432)
Q Consensus 192 ~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~----------~~~~~~~~~~--~~~~l~~~~~~~i~vwd~ 259 (432)
...|.++...++|. |..|+.++-|..++..++....... ....+.++.. ++.+.++..++.|..++.
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~ 390 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFEN 390 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEET
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEEC
Confidence 46799999988876 6667767779999987665433211 1133455554 355666666777888998
Q ss_pred cCCceEee----cCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe-CCEEEEEe
Q 014003 260 ESSAEFSL----DGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRLYSGS 333 (432)
Q Consensus 260 ~~~~~~~~----~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs 333 (432)
.++..... ......|.++..+++ .|.+|+.++-|..+|..+++. +...........|.++..+ ...|..|+
T Consensus 391 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~---~~~~~~~~~~~~v~~i~~d~~g~lwigt 467 (781)
T 3v9f_A 391 GKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKF---QIIELEKNELLDVRVFYEDKNKKIWIGT 467 (781)
T ss_dssp TEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEE---EECCSTTTCCCCEEEEEECTTSEEEEEE
T ss_pred CCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcE---EEeccCCCCCCeEEEEEECCCCCEEEEE
Confidence 76543322 223467899988866 788888888899998776531 1111001234678898887 56777777
Q ss_pred CCCeEEEEECCCCceEEEecCC-----CCCcEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeee
Q 014003 334 MDNTIRVWDLDTLEAVMTLNGH-----TDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGL 407 (432)
Q Consensus 334 ~dg~I~vwd~~~~~~~~~~~~~-----~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (432)
. +-|..+|..+++........ ...|.++..+ ...|..|+.++-+..||..+.+ ...+............+..
T Consensus 468 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~l~~~~i~~i~ 545 (781)
T 3v9f_A 468 H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL-VRKFNQYEGFCSNTINQIY 545 (781)
T ss_dssp T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCE-EEEECTTTTCSCSCEEEEE
T ss_pred C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe-EEEccCCCCCCCCeeEEEE
Confidence 7 56889998876654333222 3457777776 4556667765557788876543 2222211111111122233
Q ss_pred eCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 408 NDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 408 ~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.+++|. +.+ |+.+|.|..||.+
T Consensus 546 ~d~~g~-lWi-~T~~Glv~~~d~~ 567 (781)
T 3v9f_A 546 RSSKGQ-MWL-ATGEGLVCFPSAR 567 (781)
T ss_dssp ECTTSC-EEE-EETTEEEEESCTT
T ss_pred ECCCCC-EEE-EECCCceEEECCC
Confidence 477887 444 4446655777754
No 254
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.21 E-value=0.00066 Score=62.34 Aligned_cols=229 Identities=14% Similarity=0.111 Sum_probs=130.2
Q ss_pred ecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC--------------------CceeeEEE---CCCE
Q 014003 189 EGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG--------------------AEVGSLIC---EGPW 245 (432)
Q Consensus 189 ~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~--------------------~~~~~~~~---~~~~ 245 (432)
.+.-....++++++++++++++..++.|..||..+++........ .....+.. ++.+
T Consensus 15 ~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l 94 (322)
T 2fp8_A 15 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL 94 (322)
T ss_dssp ECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE
T ss_pred CCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcE
Confidence 333345667889999988888999999999998876543322110 12233432 3555
Q ss_pred EEEEcCCeEEEEEccCCceEeecC-----CcCCEEEEEEcC-C-EEEEEEC------------------CCcEEEEECCC
Q 014003 246 VFVGMPNVVKAWHIESSAEFSLDG-----PVGEVYSMVVAN-E-MLFAGAQ------------------DGNILVWKGIP 300 (432)
Q Consensus 246 l~~~~~~~i~vwd~~~~~~~~~~~-----~~~~v~~l~~~~-~-~l~~g~~------------------dg~i~~wd~~~ 300 (432)
+++...+.+..+|..++....+.. .......+++++ + .+.++.. ++.|..||..+
T Consensus 95 ~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 556566668888877554322211 123467888888 6 4444432 36788888765
Q ss_pred CCCCccccceeeeccccCeEEEEEe--CCEEEEE-eCCCeEEEEECCCCc--eEEEecCCCCCcEEEEEc--CCEEEEEe
Q 014003 301 NTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSG-SMDNTIRVWDLDTLE--AVMTLNGHTDAPMSLLCW--DQYLLSCS 373 (432)
Q Consensus 301 ~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sg-s~dg~I~vwd~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~s 373 (432)
+.. ..+.........++++ ++.|+.+ +.++.|.+|++.... ....+....+ ...+..+ |++.++..
T Consensus 175 ~~~------~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~ 247 (322)
T 2fp8_A 175 KET------TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS 247 (322)
T ss_dssp TEE------EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEE
T ss_pred CEE------EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEec
Confidence 431 1111111223457776 6666655 556899999987521 1111111122 5566666 56555554
Q ss_pred C----------CCcEEEEEcCCCCceeEEeecc----CCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 374 L----------DNTIKVWIMTEEGNLEVAYTHN----EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 374 ~----------dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
. .+.|..+|.. ++.+..+.... ..+..+.. .+++ ++++....+.|.+++++
T Consensus 248 ~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-----~~g~-L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 248 EELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-----HDGL-LYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-----ETTE-EEEECSSCSEEEEEEC-
T ss_pred CcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-----eCCE-EEEeecCCCceEEEecc
Confidence 4 4668888764 44444444332 12233322 3555 77776778899999875
No 255
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=0.0027 Score=65.98 Aligned_cols=248 Identities=10% Similarity=-0.012 Sum_probs=145.7
Q ss_pred eEEEEeCCCCcEEEEEEe-------cccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEe-------------
Q 014003 172 FWHSWFCGEGFTMLAKLE-------GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN------------- 231 (432)
Q Consensus 172 ~i~vw~~~~~~~~~~~l~-------~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~------------- 231 (432)
-+.+||..++ +...... .....|.++...++|. |..|+..+-|.++|..+++......
T Consensus 231 Gl~~~d~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 308 (781)
T 3v9f_A 231 GLALFNANTE-TFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNY 308 (781)
T ss_dssp EEEEEETTTT-EEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTT
T ss_pred cHheECCCCC-cEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCC
Confidence 4777887654 2221111 1246799999887776 5556664568889988765433221
Q ss_pred --CCCceeeEEE--CCCEEEEEcCCeEEEEEccCCceEeec----------CCcCCEEEEEEcCC-EEEEEECCCcEEEE
Q 014003 232 --LGAEVGSLIC--EGPWVFVGMPNVVKAWHIESSAEFSLD----------GPVGEVYSMVVANE-MLFAGAQDGNILVW 296 (432)
Q Consensus 232 --~~~~~~~~~~--~~~~l~~~~~~~i~vwd~~~~~~~~~~----------~~~~~v~~l~~~~~-~l~~g~~dg~i~~w 296 (432)
....+.++.. ++.+-++..++-|..++.......... -....|.++..+++ .+.+|+.++-|..|
T Consensus 309 ~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~ 388 (781)
T 3v9f_A 309 SLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVF 388 (781)
T ss_dssp SBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEE
T ss_pred CCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEE
Confidence 1123445543 455556666888888988766533221 12356899998876 88888888889999
Q ss_pred ECCCCCCCccccce-eeeccccCeEEEEEe-CCEEEEEeCCCeEEEEECCCCceEEEec--CCCCCcEEEEEc-CCEEEE
Q 014003 297 KGIPNTQNPFQLAA-LLKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTLN--GHTDAPMSLLCW-DQYLLS 371 (432)
Q Consensus 297 d~~~~~~~~~~~~~-~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~vwd~~~~~~~~~~~--~~~~~v~~~~~~-~~~l~s 371 (432)
|..++.. .... ........|.++..+ ...|..|+.++-|..+|.++++...... .....|.++... ...|..
T Consensus 389 ~~~~~~~---~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi 465 (781)
T 3v9f_A 389 ENGKRVA---IYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI 465 (781)
T ss_dssp ETTEEEE---ECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE
T ss_pred ECCCCeE---EEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE
Confidence 9765421 1110 012234568888887 5667778887789999988765433221 134567888777 566777
Q ss_pred EeCCCcEEEEEcCCCCceeEEeec-----cCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 372 CSLDNTIKVWIMTEEGNLEVAYTH-----NEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 372 ~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
|+. +.+..+|..+.+........ ...+..+ ..+++|. +. .|+.++-|..||..
T Consensus 466 gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i----~~d~~g~-lW-igt~~~Gl~~~~~~ 523 (781)
T 3v9f_A 466 GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSI----AQDSEGR-FW-IGTFGGGVGIYTPD 523 (781)
T ss_dssp EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEE----EECTTCC-EE-EEESSSCEEEECTT
T ss_pred EEC-CceEEEeCCCCeEEecccCcccccccceeEEE----EEcCCCC-EE-EEEcCCCEEEEeCC
Confidence 776 56889998765543222111 1222222 3477887 43 34443346666643
No 256
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.11 E-value=0.0025 Score=57.52 Aligned_cols=213 Identities=10% Similarity=0.123 Sum_probs=134.5
Q ss_pred CCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC-EEEEEECCC
Q 014003 213 DGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDG 291 (432)
Q Consensus 213 Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg 291 (432)
+.+|.|-|+..+......+..++..-+.+..+.++.-....+.++|+++.+.+........|.-..|-.+ .|+..+ +.
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~AdsAIMnP~~~ViALrag~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT-~t 126 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DN 126 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEE-SS
T ss_pred CCEEEEEECCCCCCccccccccceeeeCCCccEEEEecCCeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEc-CC
Confidence 3468888888877776666777666666777888777788899999999987766666678888888766 444444 46
Q ss_pred cEEEEECCCCCCCccccceeeecccc----CeEEEEEe--CCEEEEEe-------CCCeEEEEECCCCceEEEecCCCCC
Q 014003 292 NILVWKGIPNTQNPFQLAALLKGHTR----PVTCLAVG--GKRLYSGS-------MDNTIRVWDLDTLEAVMTLNGHTDA 358 (432)
Q Consensus 292 ~i~~wd~~~~~~~~~~~~~~~~~h~~----~v~~l~~~--~~~l~sgs-------~dg~I~vwd~~~~~~~~~~~~~~~~ 358 (432)
.|+-|++.... .+...+.-|.. .|.....+ .++++..+ -.|.+.+|..+. +.-+.+++|.+.
T Consensus 127 aVyHWs~~~~s----~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~ 201 (365)
T 2xzh_A 127 AVYHWSMEGES----QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAAS 201 (365)
T ss_dssp EEEEEESSTTC----CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEE
T ss_pred cEEEEcccCCC----CCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeee
Confidence 89999987643 24444444432 23333333 55544332 247889999874 556778888766
Q ss_pred cEEEEEcC-----CEEEEEeC---CCcEEEEEcCCC---C-----ceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCC
Q 014003 359 PMSLLCWD-----QYLLSCSL---DNTIKVWIMTEE---G-----NLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND 422 (432)
Q Consensus 359 v~~~~~~~-----~~l~s~s~---dg~i~iwd~~~~---~-----~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~D 422 (432)
-..+...+ +.++.+.. .++++|-++... . +...+.-..+......++...|+.-. ++..-+.-
T Consensus 202 F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kyg-viyviTK~ 280 (365)
T 2xzh_A 202 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKY 280 (365)
T ss_dssp EEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTT-EEEEEETT
T ss_pred eEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCC-EEEEEeCC
Confidence 55554443 23333332 258999998543 1 11111112222233333333455555 77778899
Q ss_pred CeEEEeeCCC
Q 014003 423 DSVHLYELPS 432 (432)
Q Consensus 423 g~I~iwdl~s 432 (432)
|.|++||++|
T Consensus 281 G~ihlyDleT 290 (365)
T 2xzh_A 281 GYIHLYDLET 290 (365)
T ss_dssp SEEEEEETTT
T ss_pred cEEEEEEccc
Confidence 9999999986
No 257
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.09 E-value=0.00019 Score=70.53 Aligned_cols=235 Identities=15% Similarity=0.142 Sum_probs=143.7
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEec-ccCcEEEEEe-c-CCCCEEEEEe------------------CCCcEEEEeC
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEG-HKKAVSGIAL-P-LRSDKLYSGS------------------RDGTVQLWDC 221 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~-H~~~V~~l~~-~-~~~~~l~s~s------------------~Dg~v~iWd~ 221 (432)
..+....+..|.+.|+.+. +....+.- .......+++ + |++++++.++ .++.+.+.|.
T Consensus 104 lfVnd~~~~rVavIdl~t~-~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~ 182 (595)
T 1fwx_A 104 LFMNDKANTRVARVRCDVM-KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA 182 (595)
T ss_dssp EEEEETTTTEEEEEETTTT-EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEET
T ss_pred EEEEcCCCCEEEEEECCCc-eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEEC
Confidence 3455566778999999887 65553332 2356889998 5 9999999985 3468999999
Q ss_pred CCCceeEEEeCCCcee--eEEECCCEEEEEcCC----------------eEEEEEccCCceEeecCCcCCEEEEEEcCCE
Q 014003 222 HTGQSASVINLGAEVG--SLICEGPWVFVGMPN----------------VVKAWHIESSAEFSLDGPVGEVYSMVVANEM 283 (432)
Q Consensus 222 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~----------------~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~~ 283 (432)
++.+...++..+.... .+..++++++++..+ .+.+.|.......... ++.
T Consensus 183 ~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~------------Gk~ 250 (595)
T 1fwx_A 183 DKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA------------GDY 250 (595)
T ss_dssp TTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH------------TCS
T ss_pred CCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC------------CCe
Confidence 9999999988644433 333578888766422 2555554433221111 111
Q ss_pred EEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEEe-CCCeEEEEECCCCc------------e
Q 014003 284 LFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGS-MDNTIRVWDLDTLE------------A 348 (432)
Q Consensus 284 l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs-~dg~I~vwd~~~~~------------~ 348 (432)
... +.|.+.|..+.+. ...+..+... ....++.++ |+++++++ .+.+|.++|+++.+ .
T Consensus 251 ~~i----~~V~VID~~~~~~--~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 251 QEL----NGVKVVDGRKEAS--SLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp EEE----TTEEEEECSGGGC--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred eEE----CcEEEEeCcccCC--ceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence 111 5699999987321 0112333322 233456665 88776655 67899999999753 3
Q ss_pred EEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCC----------CCceeEEeeccCC-cceEEEeeeeCCCCCcE
Q 014003 349 VMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTE----------EGNLEVAYTHNED-HGVLALGGLNDPDGNPV 415 (432)
Q Consensus 349 ~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~----------~~~~~~~~~~~~~-~~~~~~~~~~sp~g~~~ 415 (432)
+.++.. ......++|+ |...++.-.|++|.+||+.+ .+.+..+..|..+ ....+.....+|||+ +
T Consensus 324 ~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk-~ 401 (595)
T 1fwx_A 324 VAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATND-W 401 (595)
T ss_dssp EECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSS-E
T ss_pred EEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCC-E
Confidence 444432 2345677777 64445666799999999987 3444455444332 122223334589999 5
Q ss_pred EEEE
Q 014003 416 LICS 419 (432)
Q Consensus 416 l~sg 419 (432)
|+++
T Consensus 402 l~~~ 405 (595)
T 1fwx_A 402 LVCL 405 (595)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 5555
No 258
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.07 E-value=0.0016 Score=57.82 Aligned_cols=170 Identities=12% Similarity=0.013 Sum_probs=114.8
Q ss_pred CCCeEEEEeCCCCcEEEEEEec-ccCcEEEEEecCCCCEEE-EEeCCCcEEEEeCCCCceeEEEeCC-CceeeEEECCCE
Q 014003 169 ECRFWHSWFCGEGFTMLAKLEG-HKKAVSGIALPLRSDKLY-SGSRDGTVQLWDCHTGQSASVINLG-AEVGSLICEGPW 245 (432)
Q Consensus 169 ~d~~i~vw~~~~~~~~~~~l~~-H~~~V~~l~~~~~~~~l~-s~s~Dg~v~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~ 245 (432)
.++.|++.|+.++ +.+..+.- .......+++. ++.|+ +.-.++.+.++|..+.+.+..++.+ ..-..+..++..
T Consensus 42 ~~s~v~~iD~~tg-~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~ 118 (266)
T 2iwa_A 42 GRSSVRQVALQTG-KVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKI 118 (266)
T ss_dssp TTCEEEEEETTTC-CEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSS
T ss_pred CCCEEEEEECCCC-CEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCE
Confidence 3679999999988 55665542 22233456664 44554 4455789999999999999999876 444557777765
Q ss_pred EEEE-cCCeEEEEEccCCceEeecC------CcCCEEEEEEcCCEEEEEE-CCCcEEEEECCCCCCCccccceeeecc--
Q 014003 246 VFVG-MPNVVKAWHIESSAEFSLDG------PVGEVYSMVVANEMLFAGA-QDGNILVWKGIPNTQNPFQLAALLKGH-- 315 (432)
Q Consensus 246 l~~~-~~~~i~vwd~~~~~~~~~~~------~~~~v~~l~~~~~~l~~g~-~dg~i~~wd~~~~~~~~~~~~~~~~~h-- 315 (432)
++++ .++.|.++|.++.+...... +...+..+.+....+.+.. .++.|.+.|..+++. +..+...
T Consensus 119 l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V-----~~~I~~~g~ 193 (266)
T 2iwa_A 119 LYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTL-----LGWILLPNL 193 (266)
T ss_dssp EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCE-----EEEEECHHH
T ss_pred EEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcE-----EEEEECCCc
Confidence 5555 67899999999987653221 1124667777755555555 578999999998753 3433321
Q ss_pred -----------ccCeEEEEEe--CC-EEEEEeCCCeEEEEECCCC
Q 014003 316 -----------TRPVTCLAVG--GK-RLYSGSMDNTIRVWDLDTL 346 (432)
Q Consensus 316 -----------~~~v~~l~~~--~~-~l~sgs~dg~I~vwd~~~~ 346 (432)
......|+++ ++ .++++...+.+.+.++...
T Consensus 194 ~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 194 RKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp HHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 1245789998 44 5666667889999887654
No 259
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.04 E-value=0.00055 Score=60.29 Aligned_cols=150 Identities=11% Similarity=0.038 Sum_probs=102.9
Q ss_pred cCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEE-EEeCCCeEEEEECCCCce
Q 014003 271 VGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLY-SGSMDNTIRVWDLDTLEA 348 (432)
Q Consensus 271 ~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~-sgs~dg~I~vwd~~~~~~ 348 (432)
......+.++++ ++.+.+.+|.|+.+|+.+++. ...+-....---.+++.++.|+ +.-.++.+.+||.++++.
T Consensus 54 ~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv-----~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 54 NAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQP-----VWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp TCCEEEEEEETTEEEEEETTTTEEEECCSSCSSC-----SEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE
T ss_pred ccccceEEEECCEEEEEcCCCCEEEEEECCCCcE-----EeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE
Confidence 344568888877 667777888999999999864 3333111112234677755544 445689999999999999
Q ss_pred EEEecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeeccC--Cc---ceEEEeeeeCCCCCcEEEEEeCCC
Q 014003 349 VMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE--DH---GVLALGGLNDPDGNPVLICSCNDD 423 (432)
Q Consensus 349 ~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~---~~~~~~~~~sp~g~~~l~sg~~Dg 423 (432)
+.++.... .-..++..++.|+.+..++.|.++|..+.+.+..+..... .+ ..+.+ .+|+ +.+..-.++
T Consensus 129 ~~ti~~~~-eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~-----~dG~-lyanvw~s~ 201 (268)
T 3nok_A 129 ERTTRYSG-EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC-----ANGV-IYANIWHSS 201 (268)
T ss_dssp EEEEECSS-CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE-----ETTE-EEEEETTCS
T ss_pred EEEEeCCC-ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE-----eCCE-EEEEECCCC
Confidence 99997533 3367777888888887899999999999887776654322 21 12233 2665 666555677
Q ss_pred eEEEeeCCC
Q 014003 424 SVHLYELPS 432 (432)
Q Consensus 424 ~I~iwdl~s 432 (432)
.|.+.|.+|
T Consensus 202 ~I~vIDp~T 210 (268)
T 3nok_A 202 DVLEIDPAT 210 (268)
T ss_dssp EEEEECTTT
T ss_pred eEEEEeCCC
Confidence 888888764
No 260
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.97 E-value=0.0035 Score=55.61 Aligned_cols=150 Identities=9% Similarity=0.050 Sum_probs=89.8
Q ss_pred CCEEEEEEcCC--E-EEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEE-eCCCeEEEEECCC
Q 014003 272 GEVYSMVVANE--M-LFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSG-SMDNTIRVWDLDT 345 (432)
Q Consensus 272 ~~v~~l~~~~~--~-l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sg-s~dg~I~vwd~~~ 345 (432)
.....++++++ . +++-..++.|..+|...... .............++++ +..++.+ ..++.|.++|+..
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-----~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g 110 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-----TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG 110 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-----EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-----EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC
Confidence 34678888864 4 44455678999999876532 12222222456788886 4555554 4568999999875
Q ss_pred CceEEEecCCCCCcEEEEEc--CCEEEEEeC---CCcEEEEEcCCCCceeEEe-eccCCcceEEEeeeeCCCCCcEEEEE
Q 014003 346 LEAVMTLNGHTDAPMSLLCW--DQYLLSCSL---DNTIKVWIMTEEGNLEVAY-THNEDHGVLALGGLNDPDGNPVLICS 419 (432)
Q Consensus 346 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~---dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~sp~g~~~l~sg 419 (432)
................++++ +..|+.+.. .+.|..+++.... ...+. ........+++ +|++..++++-
T Consensus 111 ~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~----d~~~~~lyv~d 185 (267)
T 1npe_A 111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTF----DAFSSQLCWVD 185 (267)
T ss_dssp CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEE----ETTTTEEEEEE
T ss_pred CCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEE----cCCCCEEEEEE
Confidence 43322232222445777776 456655544 3688888876433 22222 11122334444 78877577777
Q ss_pred eCCCeEEEeeCC
Q 014003 420 CNDDSVHLYELP 431 (432)
Q Consensus 420 ~~Dg~I~iwdl~ 431 (432)
...+.|.++|+.
T Consensus 186 ~~~~~I~~~~~~ 197 (267)
T 1npe_A 186 AGTHRAECLNPA 197 (267)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCEEEEEecC
Confidence 778899999874
No 261
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.95 E-value=0.014 Score=55.42 Aligned_cols=208 Identities=11% Similarity=0.032 Sum_probs=120.7
Q ss_pred CCCCEEEE-EeCCCcEEEEeCCCC----ceeEEEe-------CCC-cee--eEEECCCEEEEE-cC------CeEEEEEc
Q 014003 202 LRSDKLYS-GSRDGTVQLWDCHTG----QSASVIN-------LGA-EVG--SLICEGPWVFVG-MP------NVVKAWHI 259 (432)
Q Consensus 202 ~~~~~l~s-~s~Dg~v~iWd~~~~----~~~~~~~-------~~~-~~~--~~~~~~~~l~~~-~~------~~i~vwd~ 259 (432)
++.++|+. +-.+++|.+.|+.+. +..+++. .+. ... .+.+++ ++++. .+ +.+.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 67777665 556789999999765 5666663 111 111 223466 44432 33 68999999
Q ss_pred cCCceEeecC----CcCCEEEEEEcCC--EEEEEE-------------------CCCcEEEEECCCCCCCccccceeeec
Q 014003 260 ESSAEFSLDG----PVGEVYSMVVANE--MLFAGA-------------------QDGNILVWKGIPNTQNPFQLAALLKG 314 (432)
Q Consensus 260 ~~~~~~~~~~----~~~~v~~l~~~~~--~l~~g~-------------------~dg~i~~wd~~~~~~~~~~~~~~~~~ 314 (432)
++.+....-. ....-+.+-++++ .+++.. .+.+|.+||+.+++ .+.++..
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-----~~~tI~v 246 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-----RIHSLTL 246 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-----EEEEEES
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-----EeeEEec
Confidence 9988764332 1122345666776 666653 37899999998753 3444443
Q ss_pred c--ccCeEEEEE--e--CCEEEEEe------CCCeEEEEECCCCce--EEEe--cCC----------------CCCcEEE
Q 014003 315 H--TRPVTCLAV--G--GKRLYSGS------MDNTIRVWDLDTLEA--VMTL--NGH----------------TDAPMSL 362 (432)
Q Consensus 315 h--~~~v~~l~~--~--~~~l~sgs------~dg~I~vwd~~~~~~--~~~~--~~~----------------~~~v~~~ 362 (432)
. ......+.| + ++++++++ .+++|.+|..+.++. .+.+ ... ......+
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 2 123344555 5 77877776 466888776654422 1111 110 1234455
Q ss_pred EEc--CCEEEEEeC-CCcEEEEEcCCCCc---eeEEeeccC--------------CcceEEEeeeeCCCCCcEEEEEe
Q 014003 363 LCW--DQYLLSCSL-DNTIKVWIMTEEGN---LEVAYTHNE--------------DHGVLALGGLNDPDGNPVLICSC 420 (432)
Q Consensus 363 ~~~--~~~l~s~s~-dg~i~iwd~~~~~~---~~~~~~~~~--------------~~~~~~~~~~~sp~g~~~l~sg~ 420 (432)
..+ +++|.++.. .+.|.+||+..... +..+..... ....+.+ +|||+ .|+++.
T Consensus 327 ~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~l----SpDGk-~LyVaN 399 (462)
T 2ece_A 327 DISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEI----SRDGR-RVYVTN 399 (462)
T ss_dssp EECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEE----CTTSS-EEEEEC
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEE----cCCCC-EEEEEc
Confidence 555 787777664 78999999864432 222222210 1355666 89999 555554
No 262
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.93 E-value=0.0061 Score=57.25 Aligned_cols=212 Identities=10% Similarity=0.119 Sum_probs=132.9
Q ss_pred CcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC-EEEEEECCCc
Q 014003 214 GTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGN 292 (432)
Q Consensus 214 g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~ 292 (432)
.+|.|-|+..+..+...+...+..-+.+..++++.-....+.++|+++...+........|.-..|-.+ .|+.. .+..
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lV-T~ta 126 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV-TDNA 126 (494)
T ss_dssp CEEEEEETTSTTSCEEEECCCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEE-CSSE
T ss_pred CeEEEEECCCCCcceecccccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEE-cCCe
Confidence 467888888877776666666666666777777777788899999988887765555556666666555 44444 4568
Q ss_pred EEEEECCCCCCCccccceeeecccc----CeEEEEEe--CCEEEEEe-------CCCeEEEEECCCCceEEEecCCCCCc
Q 014003 293 ILVWKGIPNTQNPFQLAALLKGHTR----PVTCLAVG--GKRLYSGS-------MDNTIRVWDLDTLEAVMTLNGHTDAP 359 (432)
Q Consensus 293 i~~wd~~~~~~~~~~~~~~~~~h~~----~v~~l~~~--~~~l~sgs-------~dg~I~vwd~~~~~~~~~~~~~~~~v 359 (432)
|+-|++.... .+...+.-|.. .|.....+ .++++..+ ..|.+.+|+.+. +.-+.++||.+.-
T Consensus 127 VyHWsi~~~s----~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F 201 (494)
T 1bpo_A 127 VYHWSMEGES----QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASF 201 (494)
T ss_dssp EEEEESSSSC----CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEE
T ss_pred eEEecccCCC----CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeee
Confidence 9999987632 24444544432 23333333 55554322 247899999874 5567788887766
Q ss_pred EEEEEcC-----CEEEEEeCC---CcEEEEEcCCC--------CceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCC
Q 014003 360 MSLLCWD-----QYLLSCSLD---NTIKVWIMTEE--------GNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD 423 (432)
Q Consensus 360 ~~~~~~~-----~~l~s~s~d---g~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg 423 (432)
..+...+ ..++.+... ++++|-++... +....+.-..+......++...++.-. ++..-+.-|
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G 280 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYG 280 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTS
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCc
Confidence 6665553 244444433 78999998653 111111112222333333334466655 777788999
Q ss_pred eEEEeeCCC
Q 014003 424 SVHLYELPS 432 (432)
Q Consensus 424 ~I~iwdl~s 432 (432)
.|++||++|
T Consensus 281 ~i~lyDleT 289 (494)
T 1bpo_A 281 YIHLYDLET 289 (494)
T ss_dssp EEEEEETTT
T ss_pred eEEEEeccc
Confidence 999999986
No 263
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.92 E-value=0.0034 Score=64.92 Aligned_cols=189 Identities=10% Similarity=-0.024 Sum_probs=104.2
Q ss_pred cEEEEEec-CCCCEEEEEeC-CC----cEEEEeCCCC-ceeE-EEeCCCceeeEEECCCEEE-EEcC-----CeEEEEEc
Q 014003 194 AVSGIALP-LRSDKLYSGSR-DG----TVQLWDCHTG-QSAS-VINLGAEVGSLICEGPWVF-VGMP-----NVVKAWHI 259 (432)
Q Consensus 194 ~V~~l~~~-~~~~~l~s~s~-Dg----~v~iWd~~~~-~~~~-~~~~~~~~~~~~~~~~~l~-~~~~-----~~i~vwd~ 259 (432)
.+...+|| |||++||-+.. +| +|+++|+.++ +.+. .+..........++++.|+ +..+ ..|..+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence 68889999 99998874432 33 5999999998 6321 1111111123345776555 4433 26788888
Q ss_pred cCCc---eEeec-CCcCCEEEEEEcCC--EEEEEE---CCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe-CCEE
Q 014003 260 ESSA---EFSLD-GPVGEVYSMVVANE--MLFAGA---QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG-GKRL 329 (432)
Q Consensus 260 ~~~~---~~~~~-~~~~~v~~l~~~~~--~l~~g~---~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l 329 (432)
.++. ..... ........+.++++ +|+..+ ....|.++|+.++... ...............++.|+ ++.|
T Consensus 255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~-~~~~~l~~~~~~~~~s~~~~~g~~l 333 (751)
T 2xe4_A 255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH-NTLEIVRPREKGVRYDVQMHGTSHL 333 (751)
T ss_dssp TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC-CCEEESSCCCTTCCEEEEEETTTEE
T ss_pred CCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC-ceeEEeecCCCCceEEEeeeeCCEE
Confidence 7764 22222 22344667889988 444433 2346888898775321 10012223334556667644 6665
Q ss_pred EEEeCC-----CeEEEEECCCCceEEE-ecCCCC--CcEEEEEcCC-EEEEEeCCCcEE--EEEc
Q 014003 330 YSGSMD-----NTIRVWDLDTLEAVMT-LNGHTD--APMSLLCWDQ-YLLSCSLDNTIK--VWIM 383 (432)
Q Consensus 330 ~sgs~d-----g~I~vwd~~~~~~~~~-~~~~~~--~v~~~~~~~~-~l~s~s~dg~i~--iwd~ 383 (432)
+..+.. ..|..+|+.++..... +..+.. .+..+.+.++ ++++...++..+ ++|+
T Consensus 334 ~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 334 VILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred EEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 554432 3788888765322222 222333 3455666654 556666777654 4554
No 264
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.91 E-value=0.0012 Score=67.08 Aligned_cols=242 Identities=13% Similarity=0.095 Sum_probs=128.4
Q ss_pred eEEEEeCCCC-cEEEEEEe-cccCcEEEEEecCCCCEEEEEeC-CCcEEEEeCCCCceeEEEeCCCc---eeeEEE-CCC
Q 014003 172 FWHSWFCGEG-FTMLAKLE-GHKKAVSGIALPLRSDKLYSGSR-DGTVQLWDCHTGQSASVINLGAE---VGSLIC-EGP 244 (432)
Q Consensus 172 ~i~vw~~~~~-~~~~~~l~-~H~~~V~~l~~~~~~~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~~~---~~~~~~-~~~ 244 (432)
.+.+||..++ ...+..+. .+.....++++..+++.++.|+. +..+.+||..+.+-...-..... ...... +++
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~ 299 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 299 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCe
Confidence 5888998664 22223332 23344445677789999999984 46899999987754433222211 122333 788
Q ss_pred EEEEEc--C-----CeEEEEEccCCceEeecCC------cCCEEEEE-EcCCEEEEEECC---------CcEEEEECCCC
Q 014003 245 WVFVGM--P-----NVVKAWHIESSAEFSLDGP------VGEVYSMV-VANEMLFAGAQD---------GNILVWKGIPN 301 (432)
Q Consensus 245 ~l~~~~--~-----~~i~vwd~~~~~~~~~~~~------~~~v~~l~-~~~~~l~~g~~d---------g~i~~wd~~~~ 301 (432)
+++.|. + ..+.+||+.++.-...... ...-.++. .....++.|+.+ ..+..||..+.
T Consensus 300 iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~ 379 (656)
T 1k3i_A 300 VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS 379 (656)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTT
T ss_pred EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCc
Confidence 777664 2 5789999987653322110 00000111 112244455444 35678887765
Q ss_pred CCCccccceeeec------cccCeEEEEE---eCCEEEEEeCCC-----------eEEEEECCCCceEEEe--cCCCC--
Q 014003 302 TQNPFQLAALLKG------HTRPVTCLAV---GGKRLYSGSMDN-----------TIRVWDLDTLEAVMTL--NGHTD-- 357 (432)
Q Consensus 302 ~~~~~~~~~~~~~------h~~~v~~l~~---~~~~l~sgs~dg-----------~I~vwd~~~~~~~~~~--~~~~~-- 357 (432)
.- ......... ....-.++.+ ++++++.|+.++ .|.+||..+.+-.... ..+..
T Consensus 380 ~w--~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~ 457 (656)
T 1k3i_A 380 GD--VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART 457 (656)
T ss_dssp CE--EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB
T ss_pred ce--eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcc
Confidence 41 111111110 0112234443 377778887543 6888998876654332 11122
Q ss_pred CcEEEEE-cCCEEEEEeCC-----------CcEEEEEcCCCCceeEEeecc---CCcceEEEeeeeCCCCCcEEEEEeC
Q 014003 358 APMSLLC-WDQYLLSCSLD-----------NTIKVWIMTEEGNLEVAYTHN---EDHGVLALGGLNDPDGNPVLICSCN 421 (432)
Q Consensus 358 ~v~~~~~-~~~~l~s~s~d-----------g~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~sp~g~~~l~sg~~ 421 (432)
...++.. .++.++.|+.+ ..+.+||..+.+-.. +.... ..+....+ .|+|+ +++.|+.
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~-~~~~~~~R~~hs~a~l----l~dg~-v~v~GG~ 530 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK-QNPNSIVRVYHSISLL----LPDGR-VFNGGGG 530 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE-CCCCSSCCCTTEEEEE----CTTSC-EEEEECC
T ss_pred cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee-cCCCCCccccccHhhc----CCCcE-EEecCCC
Confidence 2233444 57888888864 568999987754221 11111 11122222 58998 8888874
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.88 E-value=0.018 Score=54.26 Aligned_cols=217 Identities=10% Similarity=0.070 Sum_probs=127.7
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEE-EEEeCCCcEEEEeCCCCceeEEEeCCC-ceeeEE--ECCCEE
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKL-YSGSRDGTVQLWDCHTGQSASVINLGA-EVGSLI--CEGPWV 246 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l-~s~s~Dg~v~iWd~~~~~~~~~~~~~~-~~~~~~--~~~~~l 246 (432)
..|+..++... .....+. ....+.+++|++.++.| ++-...+.|..++++.+.....+.... ....+. ..+..|
T Consensus 96 ~~I~~i~~~~~-~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l 173 (386)
T 3v65_B 96 IDIRQVLPHRS-EYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL 173 (386)
T ss_dssp SCEEEECTTSC-CCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEE
T ss_pred ccceeeccCCC-cEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeE
Confidence 55777787654 2222233 34568899998755554 555567889999998766544443221 222233 334444
Q ss_pred E-EE-cCCeEEEEEccCCceEe-ecCCcCCEEEEEEcCC--EEE-EEECC-CcEEEEECCCCCCCccccceeeeccccCe
Q 014003 247 F-VG-MPNVVKAWHIESSAEFS-LDGPVGEVYSMVVANE--MLF-AGAQD-GNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (432)
Q Consensus 247 ~-~~-~~~~i~vwd~~~~~~~~-~~~~~~~v~~l~~~~~--~l~-~g~~d-g~i~~wd~~~~~~~~~~~~~~~~~h~~~v 319 (432)
+ +. ..+.|.+.+++...... ..........++++|. .|+ +-... +.|..+++..... .......-...
T Consensus 174 Y~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-----~~~~~~~~~~P 248 (386)
T 3v65_B 174 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-----RIIADTHLFWP 248 (386)
T ss_dssp EEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----EEEECSSCSCE
T ss_pred EEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-----EEEEECCCCCe
Confidence 3 43 45678888877654332 3333456788888864 444 43344 6888888765431 11122223345
Q ss_pred EEEEEe--CCEEEE-EeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceeEEee
Q 014003 320 TCLAVG--GKRLYS-GSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAYT 394 (432)
Q Consensus 320 ~~l~~~--~~~l~s-gs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 394 (432)
..|+++ +..|+. -+..+.|..+|+........+.........+++. +..+++-...+.|..++..+++....+..
T Consensus 249 nGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 249 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred eeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 678886 555544 4556889999987544433343334455667666 44555666678898888666665555543
No 266
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.85 E-value=0.0082 Score=54.90 Aligned_cols=181 Identities=11% Similarity=0.072 Sum_probs=103.2
Q ss_pred EEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEE
Q 014003 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (432)
Q Consensus 245 ~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 321 (432)
+|..+..+.|+..|+................++++++. ++++-..++.|..+++...... ......+...-.....
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~-~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-SSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCCCE
T ss_pred EEEEECCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC-cccEEEEeCCCCCcCE
Confidence 45555556677777776654444444566788888864 4455556789999998762100 0011112222233467
Q ss_pred EEEe--CCEE-EEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeC-C-CcEEEEEcCCCCceeEEe-
Q 014003 322 LAVG--GKRL-YSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL-D-NTIKVWIMTEEGNLEVAY- 393 (432)
Q Consensus 322 l~~~--~~~l-~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~-d-g~i~iwd~~~~~~~~~~~- 393 (432)
++++ +..| ++-..++.|.++|+........+.........++++ +..|+.+.. . +.|...++.... ...+.
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~ 160 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT 160 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEEC
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEE
Confidence 7776 4444 455667899999987554433333333456777776 455554443 3 678888875433 22222
Q ss_pred eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 394 THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 394 ~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
..-.....+++ +|++..++++-...+.|..+|+.
T Consensus 161 ~~~~~P~gla~----d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 161 ENIQWPNGITL----DLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp SSCSCEEEEEE----ETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEE----eccCCEEEEEECCCCeEEEEecC
Confidence 12222345555 77777566666677889888864
No 267
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.83 E-value=0.017 Score=52.39 Aligned_cols=215 Identities=8% Similarity=0.008 Sum_probs=121.4
Q ss_pred CceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCC--cEEEEeCCCCceeEEE
Q 014003 153 KNVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDG--TVQLWDCHTGQSASVI 230 (432)
Q Consensus 153 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg--~v~iWd~~~~~~~~~~ 230 (432)
+.+++.+....+++....+.|..|+.+...... +. -......+++.++++++++..... .|..+|..+++.....
T Consensus 35 egia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~--~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~ 111 (306)
T 2p4o_A 35 ENLASAPDGTIFVTNHEVGEIVSITPDGNQQIH--AT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL 111 (306)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTTCCEEEE--EE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred ceEEECCCCCEEEEeCCCCeEEEECCCCceEEE--Ee-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEE
Confidence 345555555555666677899999987653222 22 235688999999999766654432 4777788888765544
Q ss_pred eCCC--ceeeEE-E-CCCEEEEE-cCCeEEEEEccCCc--eEee---------cCCcCCEEEEEEcCC-EEEEEECCCcE
Q 014003 231 NLGA--EVGSLI-C-EGPWVFVG-MPNVVKAWHIESSA--EFSL---------DGPVGEVYSMVVANE-MLFAGAQDGNI 293 (432)
Q Consensus 231 ~~~~--~~~~~~-~-~~~~l~~~-~~~~i~vwd~~~~~--~~~~---------~~~~~~v~~l~~~~~-~l~~g~~dg~i 293 (432)
.... ....+. . .+..+++. ..+.|..+|...+. .... .........+..+.. ++++-...+.|
T Consensus 112 ~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I 191 (306)
T 2p4o_A 112 TLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLL 191 (306)
T ss_dssp ECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEE
T ss_pred eCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEE
Confidence 4321 111121 2 33334444 47888888877542 2110 111223455655555 44555567899
Q ss_pred EEEECCC-CCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEE--EecCCCCCcEEEEEc---
Q 014003 294 LVWKGIP-NTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVM--TLNGHTDAPMSLLCW--- 365 (432)
Q Consensus 294 ~~wd~~~-~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~--~~~~~~~~v~~~~~~--- 365 (432)
..+|+.. +... ....+.. ......++++ |+++++....+.|.++|.. ++... .+........++++.
T Consensus 192 ~~~~~~~~g~~~---~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~ 266 (306)
T 2p4o_A 192 LRIPVDSTDKPG---EPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTE 266 (306)
T ss_dssp EEEEBCTTSCBC---CCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCST
T ss_pred EEEEeCCCCCCC---ccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEeccc
Confidence 9999875 2211 1111111 1223456665 7776666667899999975 65532 333333456777774
Q ss_pred --CCEEEEEeCC
Q 014003 366 --DQYLLSCSLD 375 (432)
Q Consensus 366 --~~~l~s~s~d 375 (432)
++.|+.++..
T Consensus 267 ~d~~~LyVt~~~ 278 (306)
T 2p4o_A 267 GDCTAIYVVTNG 278 (306)
T ss_dssp TTTTEEEEEECT
T ss_pred CCCCEEEEECCC
Confidence 2455555443
No 268
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.83 E-value=0.0023 Score=55.68 Aligned_cols=151 Identities=10% Similarity=-0.056 Sum_probs=100.1
Q ss_pred CcCCEEEEEEcCC-EEEEEECC--CcEEEEECCCCCCCccccceeeeccccC-eEEEEEeCCEEEEE-eCCCeEEEEECC
Q 014003 270 PVGEVYSMVVANE-MLFAGAQD--GNILVWKGIPNTQNPFQLAALLKGHTRP-VTCLAVGGKRLYSG-SMDNTIRVWDLD 344 (432)
Q Consensus 270 ~~~~v~~l~~~~~-~l~~g~~d--g~i~~wd~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~l~sg-s~dg~I~vwd~~ 344 (432)
.......+.++++ ++.+.+.+ +.|+.+|+.+++. .......... --.+++.++.|+.. -.++.+.+||.+
T Consensus 19 ~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv-----~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 19 TTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRI-----LQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp TTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCE-----EEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred CccccccEEEECCEEEEECCCCCCceEEEEECCCCCE-----EEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECC
Confidence 3455678899888 44455554 4899999998853 3443322221 23466666665554 468999999999
Q ss_pred CCceEEEecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeeccC--Cc---ceEEEeeeeCCCCCcEEEEE
Q 014003 345 TLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE--DH---GVLALGGLNDPDGNPVLICS 419 (432)
Q Consensus 345 ~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~---~~~~~~~~~sp~g~~~l~sg 419 (432)
+++.+.++.... .-..++..++.|+.+..++.|.++|..+.+.+..+..... ++ ..+.+ .+|+ +++..
T Consensus 94 tl~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~-----~~G~-lyanv 166 (243)
T 3mbr_X 94 TLTPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW-----VNGE-LLANV 166 (243)
T ss_dssp TTEEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE-----ETTE-EEEEE
T ss_pred cCcEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE-----eCCE-EEEEE
Confidence 999999997543 3367777777777777789999999999887766654321 21 12222 2565 55555
Q ss_pred eCCCeEEEeeCCC
Q 014003 420 CNDDSVHLYELPS 432 (432)
Q Consensus 420 ~~Dg~I~iwdl~s 432 (432)
-.+..|.+.|.+|
T Consensus 167 w~s~~I~vIDp~t 179 (243)
T 3mbr_X 167 WLTSRIARIDPAS 179 (243)
T ss_dssp TTTTEEEEECTTT
T ss_pred CCCCeEEEEECCC
Confidence 4677888887764
No 269
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.81 E-value=0.018 Score=52.04 Aligned_cols=218 Identities=11% Similarity=0.114 Sum_probs=144.0
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE-CCCEEEEE
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC-EGPWVFVG 249 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 249 (432)
..|-|-|+..+..+.+.--.-+++| .+|..+.+|--. ..++.++|+++.+.++.+...+++....+ +...+..-
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~AdsAI----MnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lV 123 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISADSAI----MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV 123 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCCSEEE----ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEE
T ss_pred CEEEEEECCCCCCccccccccceee----eCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCCeEEEE
Confidence 3677888876544443333333333 478887776665 68899999999999999999988887775 66777777
Q ss_pred cCCeEEEEEccCCc-eE-eecC----CcCCEEEEEEcCC---EEEEEE------CCCcEEEEECCCCCCCccccceeeec
Q 014003 250 MPNVVKAWHIESSA-EF-SLDG----PVGEVYSMVVANE---MLFAGA------QDGNILVWKGIPNTQNPFQLAALLKG 314 (432)
Q Consensus 250 ~~~~i~vwd~~~~~-~~-~~~~----~~~~v~~l~~~~~---~l~~g~------~dg~i~~wd~~~~~~~~~~~~~~~~~ 314 (432)
.+..|+-|+++... .. .+.. ...+|.....+++ .+++|- -.|.+.+|..+.+ ..+.+++
T Consensus 124 T~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~------~sQ~ieG 197 (365)
T 2xzh_A 124 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEG 197 (365)
T ss_dssp ESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT------EEEEECC
T ss_pred cCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc------ccceeee
Confidence 89999999997532 21 1221 2457778888877 344443 2477899988765 3566788
Q ss_pred cccCeEEEEEeCC-----EEEEEeC---CCeEEEEECCCC---c------eEEEecC---CCCCcEEEEEc--CCEEEEE
Q 014003 315 HTRPVTCLAVGGK-----RLYSGSM---DNTIRVWDLDTL---E------AVMTLNG---HTDAPMSLLCW--DQYLLSC 372 (432)
Q Consensus 315 h~~~v~~l~~~~~-----~l~sgs~---dg~I~vwd~~~~---~------~~~~~~~---~~~~v~~~~~~--~~~l~s~ 372 (432)
|......+..+|+ .++.+.. .++++|.++... . .+..+-. ..+-..++..+ -..+..-
T Consensus 198 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyvi 277 (365)
T 2xzh_A 198 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 277 (365)
T ss_dssp SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEE
Confidence 8766555555422 3333332 268999998432 1 1111111 12335566666 4678888
Q ss_pred eCCCcEEEEEcCCCCceeEEeeccCCc
Q 014003 373 SLDNTIKVWIMTEEGNLEVAYTHNEDH 399 (432)
Q Consensus 373 s~dg~i~iwd~~~~~~~~~~~~~~~~~ 399 (432)
+.-|.|.+||+.++.++..-.-..+.+
T Consensus 278 TK~G~ihlyDleTgt~i~~nrIS~d~i 304 (365)
T 2xzh_A 278 TKYGYIHLYDLETGTCIYMNRISGETI 304 (365)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred eCCcEEEEEEcccCcEEEEeccCCCce
Confidence 999999999999998887666555544
No 270
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.74 E-value=0.00085 Score=68.29 Aligned_cols=227 Identities=13% Similarity=0.045 Sum_probs=119.1
Q ss_pred EEEecC-CCCEEEEEeCCC-----------cEEEEeCCCCcee--EEEeCCCc--e--eeEEECCCEEEEEc--CCeEEE
Q 014003 197 GIALPL-RSDKLYSGSRDG-----------TVQLWDCHTGQSA--SVINLGAE--V--GSLICEGPWVFVGM--PNVVKA 256 (432)
Q Consensus 197 ~l~~~~-~~~~l~s~s~Dg-----------~v~iWd~~~~~~~--~~~~~~~~--~--~~~~~~~~~l~~~~--~~~i~v 256 (432)
.+++.+ +++.++.|+.+. .+.+||..+++.. ..+..... . ..+..++.+++.|. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 455666 888888887653 5889999887633 23322211 1 12235778777764 458999
Q ss_pred EEccCCceEeecC---CcCCEEEEEE-cCCEEEEEE-CC-----CcEEEEECCCCCCCccccc-----eeeeccccCeEE
Q 014003 257 WHIESSAEFSLDG---PVGEVYSMVV-ANEMLFAGA-QD-----GNILVWKGIPNTQNPFQLA-----ALLKGHTRPVTC 321 (432)
Q Consensus 257 wd~~~~~~~~~~~---~~~~v~~l~~-~~~~l~~g~-~d-----g~i~~wd~~~~~~~~~~~~-----~~~~~h~~~v~~ 321 (432)
||+.+..-..... ......+... ...+++.|+ .+ ..+.+||..+++ +..+ ..+...... ..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~---W~~~~~~~~~p~~~~~~~-~~ 345 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT---WTSLPNAKVNPMLTADKQ-GL 345 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE---EEEETTSCSGGGCCCCTT-GG
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc---ceeCCCcccccccccccc-ce
Confidence 9998775332221 1112223333 333777777 34 569999987754 2211 000000000 00
Q ss_pred EEEeCCEEEEEeC---------CCeEEEEECCCCceEEEecCCCC---------CcEEEEE---cCCEEEEEeCCC----
Q 014003 322 LAVGGKRLYSGSM---------DNTIRVWDLDTLEAVMTLNGHTD---------APMSLLC---WDQYLLSCSLDN---- 376 (432)
Q Consensus 322 l~~~~~~l~sgs~---------dg~I~vwd~~~~~~~~~~~~~~~---------~v~~~~~---~~~~l~s~s~dg---- 376 (432)
+..++..++.|+. ...+..||..+.........+.. .-.++.+ .+++++.|+.++
T Consensus 346 ~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~ 425 (656)
T 1k3i_A 346 YRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS 425 (656)
T ss_dssp GTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS
T ss_pred eecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC
Confidence 0012333344433 34678899887764433322211 2233332 367777777543
Q ss_pred -------cEEEEEcCCCCceeEE--eeccCCcceEEEeeeeCCCCCcEEEEEeCC-----------CeEEEeeCC
Q 014003 377 -------TIKVWIMTEEGNLEVA--YTHNEDHGVLALGGLNDPDGNPVLICSCND-----------DSVHLYELP 431 (432)
Q Consensus 377 -------~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~sp~g~~~l~sg~~D-----------g~I~iwdl~ 431 (432)
.|.+||..+..-.... ..........+. ..|+|+ +++.|+.+ ..+.+||..
T Consensus 426 ~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~---~l~~g~-i~v~GG~~~~~~~~~~~~~~~v~~ydp~ 496 (656)
T 1k3i_A 426 DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSV---VLPDGS-TFITGGQRRGIPFEDSTPVFTPEIYVPE 496 (656)
T ss_dssp BCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEE---ECTTSC-EEEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred CcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeE---ECCCCC-EEEECCcccCcCcCCCCcccceEEEcCC
Confidence 6778887765533222 111111111111 258898 78888754 467888864
No 271
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.74 E-value=0.012 Score=54.62 Aligned_cols=152 Identities=15% Similarity=0.101 Sum_probs=88.9
Q ss_pred cCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--C-CEEEEEeCCCeEEEEECC
Q 014003 271 VGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--G-KRLYSGSMDNTIRVWDLD 344 (432)
Q Consensus 271 ~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~-~~l~sgs~dg~I~vwd~~ 344 (432)
.....++++++. ++++-...+.|..+++..... .............++++ + +++++-...+.|.+.++.
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-----~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d 146 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-----EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD 146 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-----eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC
Confidence 345678888753 445555678899998876532 11122222334567776 4 444555567899999987
Q ss_pred CCceEEEecCCCCCcEEEEEc--CCEEE-EEeCC-CcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEe
Q 014003 345 TLEAVMTLNGHTDAPMSLLCW--DQYLL-SCSLD-NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSC 420 (432)
Q Consensus 345 ~~~~~~~~~~~~~~v~~~~~~--~~~l~-s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~ 420 (432)
.......+...-.....++++ +..|+ +-... +.|...++..................+++ +|++..+.++-.
T Consensus 147 G~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~----d~~~~~lY~aD~ 222 (349)
T 3v64_C 147 GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTI----DYAGRRMYWVDA 222 (349)
T ss_dssp SCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEE----ETTTTEEEEEET
T ss_pred CCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEE----eCCCCEEEEEEC
Confidence 654433343333456777776 44444 44444 77888887654322222112222345555 777665666666
Q ss_pred CCCeEEEeeCC
Q 014003 421 NDDSVHLYELP 431 (432)
Q Consensus 421 ~Dg~I~iwdl~ 431 (432)
..+.|..+|+.
T Consensus 223 ~~~~I~~~~~d 233 (349)
T 3v64_C 223 KHHVIERANLD 233 (349)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEEeCC
Confidence 77888888764
No 272
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.69 E-value=0.033 Score=51.67 Aligned_cols=216 Identities=10% Similarity=0.054 Sum_probs=127.1
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEE-EEeCCCcEEEEeCCCCceeEEEeCC-CceeeEE--ECCCEE
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLY-SGSRDGTVQLWDCHTGQSASVINLG-AEVGSLI--CEGPWV 246 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~-s~s~Dg~v~iWd~~~~~~~~~~~~~-~~~~~~~--~~~~~l 246 (432)
..|+..+++.. .....+.+ ...+.+++|++.++.|+ +-...+.|..++++.+......... .....+. ..+..+
T Consensus 53 ~~I~~i~~~g~-~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l 130 (349)
T 3v64_C 53 IDIRQVLPHRS-EYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL 130 (349)
T ss_dssp SCEEEECTTSC-CEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred cceEEEeCCCC-eeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeE
Confidence 44777777654 22233333 34588999987655555 5556788999999876654444322 2223333 334444
Q ss_pred -EEE-cCCeEEEEEccCCceEe-ecCCcCCEEEEEEcCC--E-EEEEECC-CcEEEEECCCCCCCccccceeeeccccCe
Q 014003 247 -FVG-MPNVVKAWHIESSAEFS-LDGPVGEVYSMVVANE--M-LFAGAQD-GNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (432)
Q Consensus 247 -~~~-~~~~i~vwd~~~~~~~~-~~~~~~~v~~l~~~~~--~-l~~g~~d-g~i~~wd~~~~~~~~~~~~~~~~~h~~~v 319 (432)
.+. ..+.|.+.+++...... ..........++++|. . +++-... +.|..+++..... .......-...
T Consensus 131 y~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-----~~~~~~~~~~P 205 (349)
T 3v64_C 131 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-----RIIADTHLFWP 205 (349)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----EESCCSSCSCE
T ss_pred EEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-----EEEEECCCCCc
Confidence 443 46789999987665333 2334456788999874 4 4444444 7898888765431 11111223345
Q ss_pred EEEEEe--CCEEEEE-eCCCeEEEEECCCCceEEEecCCCCCcEEEEEcC-CEEEEEeCCCcEEEEEcCCCCceeEEe
Q 014003 320 TCLAVG--GKRLYSG-SMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD-QYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 320 ~~l~~~--~~~l~sg-s~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (432)
..|+++ +..|+.+ +..+.|..+|+........+.........+++.+ ..+++-...+.|..++..+++....+.
T Consensus 206 nGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 206 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred ceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 678887 5555554 4567899999875443333333344456666664 445555567788888865665544443
No 273
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.68 E-value=0.028 Score=53.18 Aligned_cols=177 Identities=11% Similarity=0.034 Sum_probs=99.4
Q ss_pred cCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe-
Q 014003 250 MPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG- 325 (432)
Q Consensus 250 ~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~- 325 (432)
....|+..++..............+.++++++. ++++-...+.|+.+++...... ................++++
T Consensus 90 ~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~-~~~~~~~~~~~~~p~glavD~ 168 (400)
T 3p5b_L 90 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-SSYDTVISRDIQAPDGLAVDW 168 (400)
T ss_dssp ETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------CCCEEEECSSCSCEEEEEEET
T ss_pred ccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC-CcceEEEeCCCCCcccEEEEe
Confidence 334444444444333333344566778888863 4445556788888887653210 00112222233456678886
Q ss_pred -CC-EEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEe-C-CCcEEEEEcCCCCceeEEeeccCCc
Q 014003 326 -GK-RLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCS-L-DNTIKVWIMTEEGNLEVAYTHNEDH 399 (432)
Q Consensus 326 -~~-~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s-~-dg~i~iwd~~~~~~~~~~~~~~~~~ 399 (432)
+. ++++-...+.|.+.|++.......+...-.....++++ +.+|+... . .+.|...++............-...
T Consensus 169 ~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P 248 (400)
T 3p5b_L 169 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 248 (400)
T ss_dssp TTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCE
T ss_pred cCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCce
Confidence 44 44555567899999998665544444344456777776 45555444 2 3678888886544333322222334
Q ss_pred ceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 400 GVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 400 ~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
..+++ +|++..+.++-...+.|..+|+.
T Consensus 249 ~glav----d~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 249 NGITL----DLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp EEEEE----ETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE----EeCCCEEEEEECCCCEEEEEeCC
Confidence 55666 77776466666667888888764
No 274
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.66 E-value=0.0077 Score=56.84 Aligned_cols=153 Identities=14% Similarity=0.088 Sum_probs=88.4
Q ss_pred CcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CC-EEEEEeCCCeEEEEEC
Q 014003 270 PVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GK-RLYSGSMDNTIRVWDL 343 (432)
Q Consensus 270 ~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~sgs~dg~I~vwd~ 343 (432)
.......+++++. ++++-...+.|..+++..... ...+.........++++ +. ++++-...+.|.+.++
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-----~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~ 188 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-----EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL 188 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-----EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBT
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-----EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeC
Confidence 3445678888753 445555678888898876531 11121112233456665 44 4455556788999998
Q ss_pred CCCceEEEecCCCCCcEEEEEc--CCEEEEE-eCC-CcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEE
Q 014003 344 DTLEAVMTLNGHTDAPMSLLCW--DQYLLSC-SLD-NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICS 419 (432)
Q Consensus 344 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg 419 (432)
........+...-.....++++ +..|+.+ ... +.|..+++..................+++ +|++..++++-
T Consensus 189 dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlav----d~~~~~lY~aD 264 (386)
T 3v65_B 189 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTI----DYAGRRMYWVD 264 (386)
T ss_dssp TSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEE----EGGGTEEEEEE
T ss_pred CCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEE----eCCCCEEEEEE
Confidence 7554443444333456777776 4444444 344 67888887654333222222222345555 77666566666
Q ss_pred eCCCeEEEeeCC
Q 014003 420 CNDDSVHLYELP 431 (432)
Q Consensus 420 ~~Dg~I~iwdl~ 431 (432)
...+.|..+|+.
T Consensus 265 ~~~~~I~~~d~d 276 (386)
T 3v65_B 265 AKHHVIERANLD 276 (386)
T ss_dssp TTTTEEEEECTT
T ss_pred CCCCEEEEEeCC
Confidence 777888888764
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.62 E-value=0.03 Score=49.28 Aligned_cols=198 Identities=13% Similarity=0.174 Sum_probs=115.4
Q ss_pred EEEecccCcEEEEEecCCCCEEE-EEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCce
Q 014003 186 AKLEGHKKAVSGIALPLRSDKLY-SGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAE 264 (432)
Q Consensus 186 ~~l~~H~~~V~~l~~~~~~~~l~-s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~ 264 (432)
+.+.+-.+.+..|+|+|+++.|+ +...++.|...|.. ++.++.+....
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g------------------------------ 68 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF------------------------------ 68 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS------------------------------
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC------------------------------
Confidence 34566667899999999876555 47778889999988 88777765321
Q ss_pred EeecCCcCCEEEEEEcCC-EE-EEEECCCcEEEEECCCCCCCccccceee------eccccCeEEEEEe--CCEEEEEeC
Q 014003 265 FSLDGPVGEVYSMVVANE-ML-FAGAQDGNILVWKGIPNTQNPFQLAALL------KGHTRPVTCLAVG--GKRLYSGSM 334 (432)
Q Consensus 265 ~~~~~~~~~v~~l~~~~~-~l-~~g~~dg~i~~wd~~~~~~~~~~~~~~~------~~h~~~v~~l~~~--~~~l~sgs~ 334 (432)
......+++.++ .+ ++.-.++.+.++++..... ...+... ...+.....|+++ ++.|+++.+
T Consensus 69 ------~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~--i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E 140 (255)
T 3qqz_A 69 ------VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE--VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE 140 (255)
T ss_dssp ------CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC--EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE
T ss_pred ------CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe--eeeeeeeccccccccccCCcceEEEeCCCCEEEEEEC
Confidence 133445555555 33 3333455666666654431 0111111 1234456789998 557777666
Q ss_pred CCeEEEEECC---CCceEEEec-------CCCCCcEEEEEc---CCEEEEEeCCCcEEEEEcCCCCceeEEeecc-----
Q 014003 335 DNTIRVWDLD---TLEAVMTLN-------GHTDAPMSLLCW---DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHN----- 396 (432)
Q Consensus 335 dg~I~vwd~~---~~~~~~~~~-------~~~~~v~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----- 396 (432)
.....+|.++ ....+..+. .+.....+++++ +++++.......+.++|... +.+..+.-..
T Consensus 141 ~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l 219 (255)
T 3qqz_A 141 KNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGL 219 (255)
T ss_dssp SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGC
T ss_pred cCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCc
Confidence 5544455443 111122221 122346777777 56777777788899998764 3333333221
Q ss_pred ----CCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 397 ----EDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 397 ----~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
.....+++ +++|+ ++++ ++-+.++++.
T Consensus 220 ~~~~~qpEGia~----d~~G~-lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 220 SHNIKQAEGVAM----DASGN-IYIV-SEPNRFYRFT 250 (255)
T ss_dssp SSCCCSEEEEEE----CTTCC-EEEE-ETTTEEEEEE
T ss_pred ccccCCCCeeEE----CCCCC-EEEE-cCCceEEEEE
Confidence 13355666 89998 4444 6777777665
No 276
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.54 E-value=0.0068 Score=54.77 Aligned_cols=211 Identities=12% Similarity=0.131 Sum_probs=109.3
Q ss_pred CcEEEEeCCCCceeEEEeCCCc---eeeEEECCCEEEEEc-C-----CeEEEEEccCCc---eEeec---CCcCCEEEEE
Q 014003 214 GTVQLWDCHTGQSASVINLGAE---VGSLICEGPWVFVGM-P-----NVVKAWHIESSA---EFSLD---GPVGEVYSMV 278 (432)
Q Consensus 214 g~v~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~-~-----~~i~vwd~~~~~---~~~~~---~~~~~v~~l~ 278 (432)
..+.++|+.+.+-...-....+ ...+..++.+++.|. + +.+.++|+.+.. -.... .......++.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 3688888887653332222211 122334555555442 2 478899998876 22221 1112223333
Q ss_pred EcCCEEEEEECC-----CcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCC-----CeEEEEECCCCce
Q 014003 279 VANEMLFAGAQD-----GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD-----NTIRVWDLDTLEA 348 (432)
Q Consensus 279 ~~~~~l~~g~~d-----g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~d-----g~I~vwd~~~~~~ 348 (432)
....+++.|+.+ ..+.+||..+.+ +..+..+......-.++.++++.++.|+.+ ..+.+||+.+.+-
T Consensus 111 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 187 (301)
T 2vpj_A 111 LGDMIYVSGGFDGSRRHTSMERYDPNIDQ---WSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHW 187 (301)
T ss_dssp ETTEEEEECCBCSSCBCCEEEEEETTTTE---EEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred ECCEEEEEcccCCCcccceEEEEcCCCCe---EEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcE
Confidence 333366666543 358889987764 333333332223333444567777777654 4689999887643
Q ss_pred EEE--ecCCCCCcEEEEEcCCEEEEEeCC-----CcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeC
Q 014003 349 VMT--LNGHTDAPMSLLCWDQYLLSCSLD-----NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCN 421 (432)
Q Consensus 349 ~~~--~~~~~~~v~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~ 421 (432)
... +.........+...+..++.|+.+ ..+.+||+.+.+-... ............. .-+++ +++.|+.
T Consensus 188 ~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~r~~~~~~---~~~~~-i~v~GG~ 262 (301)
T 2vpj_A 188 TNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV-TSMTTPRCYVGAT---VLRGR-LYAIAGY 262 (301)
T ss_dssp EEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEE---EETTE-EEEECCB
T ss_pred EeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEEC-CCCCCcccceeEE---EECCE-EEEEcCc
Confidence 322 222222233444446677777764 4688999877643222 1111111111111 12566 7777765
Q ss_pred C-----CeEEEeeCCC
Q 014003 422 D-----DSVHLYELPS 432 (432)
Q Consensus 422 D-----g~I~iwdl~s 432 (432)
+ ..|.+||+++
T Consensus 263 ~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 263 DGNSLLSSIECYDPII 278 (301)
T ss_dssp CSSSBEEEEEEEETTT
T ss_pred CCCcccccEEEEcCCC
Confidence 5 4578888753
No 277
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.52 E-value=0.018 Score=56.71 Aligned_cols=180 Identities=12% Similarity=0.002 Sum_probs=106.9
Q ss_pred CCCEEEEE--cCCeEEEEEccCCceEe--ecCCcCCEEEEEEc--CC--EEEEEE------------------CCCcEEE
Q 014003 242 EGPWVFVG--MPNVVKAWHIESSAEFS--LDGPVGEVYSMVVA--NE--MLFAGA------------------QDGNILV 295 (432)
Q Consensus 242 ~~~~l~~~--~~~~i~vwd~~~~~~~~--~~~~~~~v~~l~~~--~~--~l~~g~------------------~dg~i~~ 295 (432)
+++++++. .++.|.+.|+++.+... ..........+++. |+ ++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 56677766 45679999999988554 22223457787763 55 777774 3457888
Q ss_pred EECCCCCCCccccceeeec-cccCeEEEEEeCCEEEEEeCCC--------------------------------------
Q 014003 296 WKGIPNTQNPFQLAALLKG-HTRPVTCLAVGGKRLYSGSMDN-------------------------------------- 336 (432)
Q Consensus 296 wd~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~sgs~dg-------------------------------------- 336 (432)
.|..+.+ ...++.- ..-.-..+..+|+++++.+.+.
T Consensus 180 ID~~t~~-----v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 180 VDADKWE-----VAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EETTTTE-----EEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EECCCCe-----EEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 9988643 3444332 1111122333477777776543
Q ss_pred eEEEEECCC--Cce-EEEecCCCC-CcEEEEEcCCEEEEEe-CCCcEEEEEcCCCCc-----------eeEEeeccCCcc
Q 014003 337 TIRVWDLDT--LEA-VMTLNGHTD-APMSLLCWDQYLLSCS-LDNTIKVWIMTEEGN-----------LEVAYTHNEDHG 400 (432)
Q Consensus 337 ~I~vwd~~~--~~~-~~~~~~~~~-~v~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~-----------~~~~~~~~~~~~ 400 (432)
.|.|.|.++ ++. +..+..... .-..++.+|+++++++ .+.+|.++|+.+.+. +.........
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g-- 332 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG-- 332 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC--
T ss_pred cEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC--
Confidence 477777776 444 444432211 1233334477766555 688999999986421 1111111112
Q ss_pred eEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 401 VLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 401 ~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.....|+|+| ...++.-.|+.|.+||+.
T Consensus 333 --P~h~aF~~dG-~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 333 --PLHTAFDGRG-NAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp --EEEEEECTTS-EEEEEETTTTEEEEEEHH
T ss_pred --cceEEECCCC-eEEEEEecCCcEEEEEhh
Confidence 2334459999 588888899999999964
No 278
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.50 E-value=0.0079 Score=54.42 Aligned_cols=211 Identities=16% Similarity=0.160 Sum_probs=107.8
Q ss_pred CcEEEEeCCCCceeEEEeCCCc---eeeEEECCCEEEEEc-C-----CeEEEEEccCCceEeecC---CcCCEEEEEEcC
Q 014003 214 GTVQLWDCHTGQSASVINLGAE---VGSLICEGPWVFVGM-P-----NVVKAWHIESSAEFSLDG---PVGEVYSMVVAN 281 (432)
Q Consensus 214 g~v~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~-~-----~~i~vwd~~~~~~~~~~~---~~~~v~~l~~~~ 281 (432)
..+..+|+.+.+-...-....+ ...+..++.+++.|. + +.+.+||+.+.+-..... ......+..+..
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~ 109 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNG 109 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECC
Confidence 3578888887654333222211 112234555555442 2 468889988776332221 112223333444
Q ss_pred CEEEEEECCC-----cEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCC-------CeEEEEECCCCceE
Q 014003 282 EMLFAGAQDG-----NILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD-------NTIRVWDLDTLEAV 349 (432)
Q Consensus 282 ~~l~~g~~dg-----~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~d-------g~I~vwd~~~~~~~ 349 (432)
.+++.|+.++ .+.+||+.+.+ +..+..+........+..++++.++.|+.+ ..+.+||+.+.+-.
T Consensus 110 ~iyv~GG~~~~~~~~~~~~~d~~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 110 LLYAVGGFDGSTGLSSVEAYNIKSNE---WFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp EEEEEEEECSSCEEEEEEEEETTTTE---EEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred EEEEEcCCCCCccCceEEEEeCCCCe---EeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 4666666553 57788887654 333333322222333444557667776543 45889998876432
Q ss_pred E--EecCCCCCcEEEEEcCCEEEEEeCC-----CcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCC
Q 014003 350 M--TLNGHTDAPMSLLCWDQYLLSCSLD-----NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCND 422 (432)
Q Consensus 350 ~--~~~~~~~~v~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~D 422 (432)
. .+.........+...+.+++.|+.+ ..+.+||+.+.+-.. +............. ..+++ +++.|+.+
T Consensus 187 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~---~~~~~-i~v~GG~~ 261 (302)
T 2xn4_A 187 YIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ-VADMNMCRRNAGVC---AVNGL-LYVVGGDD 261 (302)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEE---EETTE-EEEECCBC
T ss_pred ECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEee-CCCCCCccccCeEE---EECCE-EEEECCcC
Confidence 2 2222222233444456777777764 368899987654222 11111111111111 12556 77777755
Q ss_pred C-----eEEEeeCCC
Q 014003 423 D-----SVHLYELPS 432 (432)
Q Consensus 423 g-----~I~iwdl~s 432 (432)
+ .+.+||+.+
T Consensus 262 ~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 262 GSCNLASVEYYNPTT 276 (302)
T ss_dssp SSSBCCCEEEEETTT
T ss_pred CCcccccEEEEcCCC
Confidence 3 488888763
No 279
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.49 E-value=0.07 Score=50.22 Aligned_cols=242 Identities=11% Similarity=0.083 Sum_probs=155.3
Q ss_pred CCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE-CCCEEEE
Q 014003 170 CRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC-EGPWVFV 248 (432)
Q Consensus 170 d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 248 (432)
...|-|-|+..+..+.+.--.-++.| .+|..+.+|-=. ..++.|+|+++.+.++.+...+++....+ +...+..
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~AdsAI----MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~l 121 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISADSAI----MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL 121 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCCSEEE----ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEE
T ss_pred CCeEEEEECCCCCcceecccccceee----eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEE
Confidence 34788888876544433332223322 467777666655 68999999999999999999888887774 6777888
Q ss_pred EcCCeEEEEEccCCc-e-EeecC----CcCCEEEEEEcCC---EEEEEE------CCCcEEEEECCCCCCCccccceeee
Q 014003 249 GMPNVVKAWHIESSA-E-FSLDG----PVGEVYSMVVANE---MLFAGA------QDGNILVWKGIPNTQNPFQLAALLK 313 (432)
Q Consensus 249 ~~~~~i~vwd~~~~~-~-~~~~~----~~~~v~~l~~~~~---~l~~g~------~dg~i~~wd~~~~~~~~~~~~~~~~ 313 (432)
-.+..|+-|+++... . ..+.. ....|.....+++ .+++|- -.|.+.+|....+ ..+.++
T Consensus 122 VT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~------~sQ~ie 195 (494)
T 1bpo_A 122 VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIE 195 (494)
T ss_dssp ECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC------CEEEEC
T ss_pred EcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc------ccchhe
Confidence 889999999997532 2 12222 2467778888877 344433 3478899998776 356788
Q ss_pred ccccCeEEEEEeC-----CEEEEEeCC---CeEEEEECCCC---c-----e-EEEec---CCCCCcEEEEEc--CCEEEE
Q 014003 314 GHTRPVTCLAVGG-----KRLYSGSMD---NTIRVWDLDTL---E-----A-VMTLN---GHTDAPMSLLCW--DQYLLS 371 (432)
Q Consensus 314 ~h~~~v~~l~~~~-----~~l~sgs~d---g~I~vwd~~~~---~-----~-~~~~~---~~~~~v~~~~~~--~~~l~s 371 (432)
+|......+..+| +.++.+... ++++|.++... . . +..+- ...+-..++..+ -..+..
T Consensus 196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv 275 (494)
T 1bpo_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (494)
T ss_dssp CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence 8877666666653 244545443 78999998542 1 1 11111 112334556666 467888
Q ss_pred EeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEE
Q 014003 372 CSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHL 427 (432)
Q Consensus 372 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~i 427 (432)
.+.-|.|.+||+.++.++..-.-..+.+-. .+.+.... =+++-...|.|.-
T Consensus 276 iTK~G~i~lyDleTgt~i~~nrIs~~~iF~----t~~~~~~~-Gi~~Vnr~GqVl~ 326 (494)
T 1bpo_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFV----TAPHEATA-GIIGVNRKGQVLS 326 (494)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEE----EEEETTTT-EEEEEETTCEEEE
T ss_pred EecCceEEEEecccceeeeeecccCCceEE----ecccCCCC-cEEEEccCceEEE
Confidence 899999999999999988776655444322 22233333 2444446666543
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.44 E-value=0.068 Score=48.79 Aligned_cols=217 Identities=11% Similarity=0.049 Sum_probs=125.9
Q ss_pred CeEEEEeCCCCc-EEEEEEecccCcEEEEEecCCC-CEEEEEeCCCcEEEEeCCCCcee-EEEeC-CCceeeEE--ECCC
Q 014003 171 RFWHSWFCGEGF-TMLAKLEGHKKAVSGIALPLRS-DKLYSGSRDGTVQLWDCHTGQSA-SVINL-GAEVGSLI--CEGP 244 (432)
Q Consensus 171 ~~i~vw~~~~~~-~~~~~l~~H~~~V~~l~~~~~~-~~l~s~s~Dg~v~iWd~~~~~~~-~~~~~-~~~~~~~~--~~~~ 244 (432)
..|+..+++... .....+. ....+.+++|++.+ .++++-...+.|..++++.+... ..+.. -.....+. ..+.
T Consensus 13 ~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 13 RDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred CeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 568888886542 1111222 23456789998854 45555566788999998876421 22221 12222333 3344
Q ss_pred EE-EEE-cCCeEEEEEccCCceEee-cCCcCCEEEEEEcCC--EEEEEE--CCCcEEEEECCCCCCCccccceeeecccc
Q 014003 245 WV-FVG-MPNVVKAWHIESSAEFSL-DGPVGEVYSMVVANE--MLFAGA--QDGNILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 245 ~l-~~~-~~~~i~vwd~~~~~~~~~-~~~~~~v~~l~~~~~--~l~~g~--~dg~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
.+ .+. ..+.|.+++++......+ .........+++++. .|+.+. ..+.|...++..... .......-.
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-----~~~~~~~l~ 166 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-----FIIINSEIY 166 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-----EEEECSSCS
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-----EEEEECCCC
Confidence 44 443 567899999876543332 344556788888864 555554 357888888765321 111112223
Q ss_pred CeEEEEEe--CCEEEEE-eCCCeEEEEECCCCceEEEecCCCCCcEEEEEcC-CEEEEEeCCCcEEEEEcCCCCceeEEe
Q 014003 318 PVTCLAVG--GKRLYSG-SMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWD-QYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 318 ~v~~l~~~--~~~l~sg-s~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (432)
.-..|+++ +..|+.+ +..+.|..+|+..........+.......++..+ ..+++-...+.|..++..+++....+.
T Consensus 167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 45678887 5555555 4568999999875333323333344556777774 455565567889999987766544443
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.38 E-value=0.052 Score=49.59 Aligned_cols=179 Identities=11% Similarity=0.034 Sum_probs=101.2
Q ss_pred EEEEEcCCeEEEEEccCCc--eEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCe
Q 014003 245 WVFVGMPNVVKAWHIESSA--EFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPV 319 (432)
Q Consensus 245 ~l~~~~~~~i~vwd~~~~~--~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v 319 (432)
+|..+....|+.+++.... ............+++|++. ++++-...+.|..+++...... .......-...
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~----~~~~~~~l~~p 81 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV----QNVVVSGLLSP 81 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC----CEEEEECCSCC
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce----EEEEcCCCCCc
Confidence 4445555666666666542 1111112234567888753 5555566788999998765321 11122222334
Q ss_pred EEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEe--CCCcEEEEEcCCCCceeEE
Q 014003 320 TCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCS--LDNTIKVWIMTEEGNLEVA 392 (432)
Q Consensus 320 ~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s--~dg~i~iwd~~~~~~~~~~ 392 (432)
..++++ ++++++-...+.|.++++........+.........++++ +.+|+.+. ..+.|...++.........
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~ 161 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 161 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE
Confidence 567776 4445555567899999987544333333344456777776 45555554 3577888887643322222
Q ss_pred eeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 393 YTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 393 ~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
...-.....+++ +|++..+.++-+..+.|..+|+.
T Consensus 162 ~~~l~~Pnglav----d~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 162 NSEIYWPNGLTL----DYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp CSSCSCEEEEEE----ETTTTEEEEEETTTTEEEEEETT
T ss_pred ECCCCCccEEEE----eccCCEEEEEECCCCEEEEEcCC
Confidence 222222345555 78766566766777889888864
No 282
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.35 E-value=0.043 Score=49.87 Aligned_cols=94 Identities=11% Similarity=0.110 Sum_probs=53.7
Q ss_pred CcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeC-C-----CeEEEEECCCCceEE--EecCCCCCcEEE
Q 014003 291 GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSM-D-----NTIRVWDLDTLEAVM--TLNGHTDAPMSL 362 (432)
Q Consensus 291 g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~-d-----g~I~vwd~~~~~~~~--~~~~~~~~v~~~ 362 (432)
..+.+||..+.+ ++.+..+.........+..+++.++.|+. + ..+.+||..+.+-.. .+.........+
T Consensus 117 ~~~~~~d~~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 193 (315)
T 4asc_A 117 DSVMCYDRLSFK---WGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT 193 (315)
T ss_dssp CCEEEEETTTTE---EEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred ceEEEECCCCCc---EeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE
Confidence 458888887754 33333333222333344456777777776 2 468999988754322 222222223344
Q ss_pred EEcCCEEEEEeCCC-----cEEEEEcCCCC
Q 014003 363 LCWDQYLLSCSLDN-----TIKVWIMTEEG 387 (432)
Q Consensus 363 ~~~~~~l~s~s~dg-----~i~iwd~~~~~ 387 (432)
...+..++.|+.++ .+.+||+.+.+
T Consensus 194 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 194 VHDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 44577777887654 47888887653
No 283
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.32 E-value=0.023 Score=51.34 Aligned_cols=220 Identities=6% Similarity=0.006 Sum_probs=113.0
Q ss_pred CEEEEEeC--CCcEEEEeCCCCceeEEEeCCCc---eeeEEECCCEEEEEc-----CCeEEEEEccCCceEeec---CCc
Q 014003 205 DKLYSGSR--DGTVQLWDCHTGQSASVINLGAE---VGSLICEGPWVFVGM-----PNVVKAWHIESSAEFSLD---GPV 271 (432)
Q Consensus 205 ~~l~s~s~--Dg~v~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~-----~~~i~vwd~~~~~~~~~~---~~~ 271 (432)
.+++.|+. ...+.+||..+.+-...-....+ ...+..++.+++.|. .+.+.++|+.+.+-.... ...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 92 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR 92 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc
Confidence 34455554 35788999887764433222211 122334555555543 267888998887533222 112
Q ss_pred CCEEEEEEcCCEEEEEECC------CcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeC---------CC
Q 014003 272 GEVYSMVVANEMLFAGAQD------GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSM---------DN 336 (432)
Q Consensus 272 ~~v~~l~~~~~~l~~g~~d------g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~---------dg 336 (432)
.....+.....+++.|+.+ ..+.+||..+.+ +..+..+........++..+++.++.|+. -.
T Consensus 93 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 93 DSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES---WHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp BSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTE---EEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECC
T ss_pred cceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc---eEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccc
Confidence 2223333443466667655 468899988764 33332222222223344455666666654 34
Q ss_pred eEEEEECCCCceEE--EecCCCCCcEEEEEcCCEEEEEeCC-----CcEEEEEcCCCCceeEEeeccCCcceEEEeeeeC
Q 014003 337 TIRVWDLDTLEAVM--TLNGHTDAPMSLLCWDQYLLSCSLD-----NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLND 409 (432)
Q Consensus 337 ~I~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~s 409 (432)
.+.+||+.+.+-.. .+.........+...+.+++.|+.+ ..+.+||+.+.+-.. +............. .
T Consensus 170 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~---~ 245 (306)
T 3ii7_A 170 SCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM-VSPMPWKGVTVKCA---A 245 (306)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEE-CCCCSCCBSCCEEE---E
T ss_pred eEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEE-CCCCCCCccceeEE---E
Confidence 58899998764322 2221222223334446667776654 458889987753221 11111111111111 1
Q ss_pred CCCCcEEEEEeCC-----CeEEEeeCCC
Q 014003 410 PDGNPVLICSCND-----DSVHLYELPS 432 (432)
Q Consensus 410 p~g~~~l~sg~~D-----g~I~iwdl~s 432 (432)
-+++ +++.|+.+ ..+.+||+++
T Consensus 246 ~~~~-i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 246 VGSI-VYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp ETTE-EEEEECBCSSSBCCEEEEEETTT
T ss_pred ECCE-EEEEeCcCCCeeeeeEEEEcCCC
Confidence 1555 77778744 5688888754
No 284
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.29 E-value=0.057 Score=49.54 Aligned_cols=138 Identities=14% Similarity=0.123 Sum_probs=79.1
Q ss_pred CCcEEEEECCCCCCCcccccee----eeccccCeEEEEE--e---CC-EEEEEeCCCeEEEEEC-------CCCceEEEe
Q 014003 290 DGNILVWKGIPNTQNPFQLAAL----LKGHTRPVTCLAV--G---GK-RLYSGSMDNTIRVWDL-------DTLEAVMTL 352 (432)
Q Consensus 290 dg~i~~wd~~~~~~~~~~~~~~----~~~h~~~v~~l~~--~---~~-~l~sgs~dg~I~vwd~-------~~~~~~~~~ 352 (432)
+++|.+|++...... +..+.. +......+..+++ + +. ++++...+|.+..|++ .+.+.++++
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 578999977432211 111110 0011134444555 4 33 6888889999999988 234667888
Q ss_pred cCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcCCC-----CceeEEe-ec-cCCcceEEEeeeeCCCCC-cEEEEEeCC
Q 014003 353 NGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMTEE-----GNLEVAY-TH-NEDHGVLALGGLNDPDGN-PVLICSCND 422 (432)
Q Consensus 353 ~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~-~~-~~~~~~~~~~~~~sp~g~-~~l~sg~~D 422 (432)
.... .+-.+..+ ...|+.+-+|..|-.++.+.. +.+.... .+ ...+..+++. ..++++ ++++++-.+
T Consensus 177 ~lgs-q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~--~~~~g~gyLivSsQG~ 253 (355)
T 3amr_A 177 KMNS-QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIY--YAADGKGYLMASSQGN 253 (355)
T ss_dssp ECSS-CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEE--ECGGGCEEEEEEEGGG
T ss_pred cCCC-CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEE--ecCCCCEEEEEEcCCC
Confidence 7543 45566666 589999999876666664422 2222221 11 1234455542 245666 455555577
Q ss_pred CeEEEeeCC
Q 014003 423 DSVHLYELP 431 (432)
Q Consensus 423 g~I~iwdl~ 431 (432)
++..+||.+
T Consensus 254 ~s~~Vydr~ 262 (355)
T 3amr_A 254 SSYAIYDRQ 262 (355)
T ss_dssp TEEEEEESS
T ss_pred CEEEEEECC
Confidence 899999974
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.28 E-value=0.13 Score=48.64 Aligned_cols=216 Identities=11% Similarity=0.039 Sum_probs=126.0
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEE-EEeCCCcEEEEeCCCC----ceeEEEe-CCCceeeEE--EC
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLY-SGSRDGTVQLWDCHTG----QSASVIN-LGAEVGSLI--CE 242 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~-s~s~Dg~v~iWd~~~~----~~~~~~~-~~~~~~~~~--~~ 242 (432)
..|+..+++... .. .+...-..+.+|+|++.++.|+ +-...+.|..+++... .....+. .......+. ..
T Consensus 92 ~~I~~i~l~~~~-~~-~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~ 169 (400)
T 3p5b_L 92 HEVRKMTLDRSE-YT-SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 169 (400)
T ss_dssp TEEEEECTTSCS-CE-EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETT
T ss_pred ceeEEEccCCcc-ee-EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEec
Confidence 567888876542 12 2233456788999998665555 4455788999998752 2233333 112233333 32
Q ss_pred CCEE-EEE-cCCeEEEEEccCCceEee-cCCcCCEEEEEEcCC--EEEEEEC--CCcEEEEECCCCCCCccccceeeecc
Q 014003 243 GPWV-FVG-MPNVVKAWHIESSAEFSL-DGPVGEVYSMVVANE--MLFAGAQ--DGNILVWKGIPNTQNPFQLAALLKGH 315 (432)
Q Consensus 243 ~~~l-~~~-~~~~i~vwd~~~~~~~~~-~~~~~~v~~l~~~~~--~l~~g~~--dg~i~~wd~~~~~~~~~~~~~~~~~h 315 (432)
+..| ++. ..+.|.+.+++......+ .........+++++. .|+.... .+.|...++..... .......
T Consensus 170 ~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-----~~~~~~~ 244 (400)
T 3p5b_L 170 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-----YSLVTEN 244 (400)
T ss_dssp TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC-----EEEECSS
T ss_pred CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc-----EEEEECC
Confidence 3444 443 567888888876654333 234455788899874 5554442 47888888865432 1112222
Q ss_pred ccCeEEEEEe--CCEEEEEe-CCCeEEEEECCCCceEEEecC--CCCCcEEEEEcC-CEEEEEeCCCcEEEEEcCCCCce
Q 014003 316 TRPVTCLAVG--GKRLYSGS-MDNTIRVWDLDTLEAVMTLNG--HTDAPMSLLCWD-QYLLSCSLDNTIKVWIMTEEGNL 389 (432)
Q Consensus 316 ~~~v~~l~~~--~~~l~sgs-~dg~I~vwd~~~~~~~~~~~~--~~~~v~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~ 389 (432)
-.....|+++ +..|+.+. ..+.|..+|+........... .-.....++..+ ..+++-...+.|..+|..+++.+
T Consensus 245 l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 245 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCce
Confidence 3456778887 56666554 568999999875443333322 223456677674 45556666788999997776655
Q ss_pred eEEe
Q 014003 390 EVAY 393 (432)
Q Consensus 390 ~~~~ 393 (432)
..+.
T Consensus 325 ~~i~ 328 (400)
T 3p5b_L 325 NLLA 328 (400)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5443
No 286
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.27 E-value=0.032 Score=50.26 Aligned_cols=212 Identities=9% Similarity=0.085 Sum_probs=111.7
Q ss_pred CeEEEEeCCCCc-EEEEEEecccCcEEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCc---eeEEEeCCCc---eee
Q 014003 171 RFWHSWFCGEGF-TMLAKLEGHKKAVSGIALPLRSDKLYSGSRD-----GTVQLWDCHTGQ---SASVINLGAE---VGS 238 (432)
Q Consensus 171 ~~i~vw~~~~~~-~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~D-----g~v~iWd~~~~~---~~~~~~~~~~---~~~ 238 (432)
..+.+||..+.. ..+..+......-..+. .++..++.|+.+ ..+.+||+.+.+ -...-....+ ...
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 358888887652 22211211111112222 256677777755 468999998876 3333222211 122
Q ss_pred EEECCCEEEEEc------CCeEEEEEccCCceEee---cCCcCCEEEEEEcCCEEEEEECC-----CcEEEEECCCCCCC
Q 014003 239 LICEGPWVFVGM------PNVVKAWHIESSAEFSL---DGPVGEVYSMVVANEMLFAGAQD-----GNILVWKGIPNTQN 304 (432)
Q Consensus 239 ~~~~~~~l~~~~------~~~i~vwd~~~~~~~~~---~~~~~~v~~l~~~~~~l~~g~~d-----g~i~~wd~~~~~~~ 304 (432)
+..++.+++.|. .+.+.++|+.+.+-... ........++.....+++.|+.+ ..+.+||+.+.+
T Consensus 109 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~-- 186 (301)
T 2vpj_A 109 TTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGH-- 186 (301)
T ss_dssp EEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE--
T ss_pred EEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCc--
Confidence 334666555542 34788899887653221 11222223333333366666654 468899987764
Q ss_pred ccccceeeeccccCeEEEEEeCCEEEEEeCC-----CeEEEEECCCCceEEE--ecCCCCCcEEEEEcCCEEEEEeCC--
Q 014003 305 PFQLAALLKGHTRPVTCLAVGGKRLYSGSMD-----NTIRVWDLDTLEAVMT--LNGHTDAPMSLLCWDQYLLSCSLD-- 375 (432)
Q Consensus 305 ~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~d-----g~I~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~s~d-- 375 (432)
+..+..+........++.+++..++.|+.+ ..+.+||+++.+-... +.........+...+..++.|+.+
T Consensus 187 -W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 265 (301)
T 2vpj_A 187 -WTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGN 265 (301)
T ss_dssp -EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred -EEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCC
Confidence 333333322222334445567777777764 4689999987653322 222222233444456777777765
Q ss_pred ---CcEEEEEcCCCC
Q 014003 376 ---NTIKVWIMTEEG 387 (432)
Q Consensus 376 ---g~i~iwd~~~~~ 387 (432)
..+.+||+.+.+
T Consensus 266 ~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 266 SLLSSIECYDPIIDS 280 (301)
T ss_dssp SBEEEEEEEETTTTE
T ss_pred cccccEEEEcCCCCe
Confidence 357788877653
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.26 E-value=0.062 Score=55.47 Aligned_cols=183 Identities=11% Similarity=0.058 Sum_probs=107.8
Q ss_pred CEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeE
Q 014003 244 PWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVT 320 (432)
Q Consensus 244 ~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 320 (432)
.+++......|+..++.......+......+.+++++.. ++++-...+.|+.+++...... ......+........
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-SSYDTVISRDIQAPD 474 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCCC
T ss_pred cccccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC-cceeEEEecCCCCcc
Confidence 356666677788888877665555555677888998863 4555556678988888753210 011222222334455
Q ss_pred EEEEe--C-CEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEe-CC-CcEEEEEcCCCCceeEEe
Q 014003 321 CLAVG--G-KRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCS-LD-NTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 321 ~l~~~--~-~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s-~d-g~i~iwd~~~~~~~~~~~ 393 (432)
.|+++ + +++++-...+.|.+.++........+...-.....++++ ..+|+.+. .+ +.|.+.++..........
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 77877 5 455555667899999998655444443344456778876 34555444 33 678888886544333332
Q ss_pred eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 394 THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 394 ~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
........+++ ++.+..++++-...+.|...++.
T Consensus 555 ~~l~~P~GLav----D~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 555 ENIQWPNGITL----DLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp SSCSCEEEEEE----ETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEE----ecCCCeEEEEeCCCCcEEEEecC
Confidence 22234455666 66655455555566778877763
No 288
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.23 E-value=0.015 Score=52.77 Aligned_cols=222 Identities=13% Similarity=0.126 Sum_probs=112.4
Q ss_pred CCCEEEEEeCC----CcEEEEeCCCCceeEEEeCCCc---eeeEEECCCEEEEEcC----------CeEEEEEccCCceE
Q 014003 203 RSDKLYSGSRD----GTVQLWDCHTGQSASVINLGAE---VGSLICEGPWVFVGMP----------NVVKAWHIESSAEF 265 (432)
Q Consensus 203 ~~~~l~s~s~D----g~v~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~----------~~i~vwd~~~~~~~ 265 (432)
++..++.|+.+ ..+.++|..+.+-...-....+ ...+..++.+++.|.. +.+.++|+.+.+-.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 45555666532 3578888877654333221111 1122345555554422 46788898877533
Q ss_pred eec---CCcCCEEEEEEcCCEEEEEECC-----CcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCC--
Q 014003 266 SLD---GPVGEVYSMVVANEMLFAGAQD-----GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD-- 335 (432)
Q Consensus 266 ~~~---~~~~~v~~l~~~~~~l~~g~~d-----g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~d-- 335 (432)
... ..........+...+++.|+.+ ..+.+||..+.+ +..+..+......-.++.+++..++.|+.+
T Consensus 104 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 180 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDE---WHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGT 180 (308)
T ss_dssp ECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTE---EEECCCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred ECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCe---EeECCCCCccccceEEEEECCEEEEEeCCCCC
Confidence 222 1112223333433366666543 468889987764 333323322222333444567777777654
Q ss_pred ---CeEEEEECCCCceEE--EecCCCCCcEEEEEcCCEEEEEeCC-----CcEEEEEcCCCCceeEEeeccCCcceEEEe
Q 014003 336 ---NTIRVWDLDTLEAVM--TLNGHTDAPMSLLCWDQYLLSCSLD-----NTIKVWIMTEEGNLEVAYTHNEDHGVLALG 405 (432)
Q Consensus 336 ---g~I~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 405 (432)
..+.+||+.+.+-.. .+.........+...+.+++.|+.+ ..+.+||+.+.+-.. +.............
T Consensus 181 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~r~~~~~~ 259 (308)
T 1zgk_A 181 NRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTF-VAPMKHRRSALGIT 259 (308)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEE
T ss_pred CcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEE-CCCCCCCccceEEE
Confidence 468999988754322 1221222233344456777777664 568899987754221 11111111111111
Q ss_pred eeeCCCCCcEEEEEeCC-----CeEEEeeCCC
Q 014003 406 GLNDPDGNPVLICSCND-----DSVHLYELPS 432 (432)
Q Consensus 406 ~~~sp~g~~~l~sg~~D-----g~I~iwdl~s 432 (432)
.-+++ +++.|+.+ ..+.+||+++
T Consensus 260 ---~~~~~-i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 260 ---VHQGR-IYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp ---EETTE-EEEECCBCSSCBCCEEEEEETTT
T ss_pred ---EECCE-EEEEcCcCCCcccceEEEEcCCC
Confidence 12455 77777643 4577888753
No 289
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.20 E-value=0.072 Score=48.38 Aligned_cols=105 Identities=6% Similarity=0.108 Sum_probs=55.5
Q ss_pred cCCEEEEEECC-------CcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeC------CCeEEEEECCCC
Q 014003 280 ANEMLFAGAQD-------GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSM------DNTIRVWDLDTL 346 (432)
Q Consensus 280 ~~~~l~~g~~d-------g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~------dg~I~vwd~~~~ 346 (432)
...+++.|+.+ ..+.+||..+.+ +..+..+......-..+..++..++.|+. -..+.+||+.+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 185 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAK---WSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKG 185 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTE---EEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCC---EeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCC
Confidence 33355556543 247788887654 33222222211222333455666677664 245999999876
Q ss_pred ceEE--EecCCCCCcEEEEEcCCEEEEEeCC-----CcEEEEEcCCCC
Q 014003 347 EAVM--TLNGHTDAPMSLLCWDQYLLSCSLD-----NTIKVWIMTEEG 387 (432)
Q Consensus 347 ~~~~--~~~~~~~~v~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~ 387 (432)
+-.. .+.........+...+..++.|+.+ ..+.+||+.+.+
T Consensus 186 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 186 DWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 4322 2222222233444457777777654 347788887654
No 290
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.17 E-value=0.13 Score=46.46 Aligned_cols=199 Identities=9% Similarity=0.018 Sum_probs=112.9
Q ss_pred EEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--ECCCEEEEEcC--C-eEEEE
Q 014003 183 TMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVFVGMP--N-VVKAW 257 (432)
Q Consensus 183 ~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~--~-~i~vw 257 (432)
+.+..+... .....++|+++++++++-..++.|..||... +....+........+. .++.++++... + .|..+
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSL 100 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEE
Confidence 445555433 5678899999999777777889999999875 4455555555555554 36776666532 2 46667
Q ss_pred EccCCceEeecC--CcCCEEEEEEcCC-EEEEEE-CCCcEEEEECCCCCCCcc---ccce--eeeccccCeEEEEEeCCE
Q 014003 258 HIESSAEFSLDG--PVGEVYSMVVANE-MLFAGA-QDGNILVWKGIPNTQNPF---QLAA--LLKGHTRPVTCLAVGGKR 328 (432)
Q Consensus 258 d~~~~~~~~~~~--~~~~v~~l~~~~~-~l~~g~-~dg~i~~wd~~~~~~~~~---~~~~--~~~~h~~~v~~l~~~~~~ 328 (432)
+..+++...... .......++..++ .+++.. .++.|+.+|...+..... .... .....-.....+..+++.
T Consensus 101 d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~ 180 (306)
T 2p4o_A 101 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNF 180 (306)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTE
T ss_pred cCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCE
Confidence 777776543221 1222344444444 444444 588999999765311000 0000 000111223445666766
Q ss_pred EEEE-eCCCeEEEEECCC-Cce--EEEecCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 014003 329 LYSG-SMDNTIRVWDLDT-LEA--VMTLNGHTDAPMSLLCW--DQYLLSCSLDNTIKVWIMT 384 (432)
Q Consensus 329 l~sg-s~dg~I~vwd~~~-~~~--~~~~~~~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~ 384 (432)
|+.+ +..+.|.++|+.. ++. ...+... .....++++ |+++++....+.|.++|..
T Consensus 181 lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 181 LYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred EEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 6554 4578999999874 322 1122111 123334444 6776666678899999875
No 291
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.12 E-value=0.057 Score=48.59 Aligned_cols=182 Identities=18% Similarity=0.164 Sum_probs=98.1
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCceeEEEeCCCc---eeeEEECCCEEEEE-cC-----CeEEEEEccCCceEeec
Q 014003 203 RSDKLYSGSRD-----GTVQLWDCHTGQSASVINLGAE---VGSLICEGPWVFVG-MP-----NVVKAWHIESSAEFSLD 268 (432)
Q Consensus 203 ~~~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~-~~-----~~i~vwd~~~~~~~~~~ 268 (432)
++..++.|+.+ ..+.+||..+.+-...-....+ ......++.+++.| .+ +.+.+||+.+.+-....
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 140 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA 140 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence 56677777654 3588899887764443332221 12233456655544 33 35778888876533222
Q ss_pred C---CcCCEEEEEEcCCEEEEEECC-------CcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCC---
Q 014003 269 G---PVGEVYSMVVANEMLFAGAQD-------GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD--- 335 (432)
Q Consensus 269 ~---~~~~v~~l~~~~~~l~~g~~d-------g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~d--- 335 (432)
. ......+......+++.|+.+ ..+.+||+.+.+ +..+..+.........+.+++..++.|+.+
T Consensus 141 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 217 (302)
T 2xn4_A 141 PMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNE---WTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPL 217 (302)
T ss_dssp CCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTE---EEEECCCSSCCBSCEEEEETTEEEEECCBSSSS
T ss_pred CCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCc---EEECCCCccccccccEEEECCEEEEECCCCCCc
Confidence 1 112222333333355555542 458899987764 333333322222334445567777777764
Q ss_pred --CeEEEEECCCCceEE--EecCCCCCcEEEEEcCCEEEEEeCCC-----cEEEEEcCCCC
Q 014003 336 --NTIRVWDLDTLEAVM--TLNGHTDAPMSLLCWDQYLLSCSLDN-----TIKVWIMTEEG 387 (432)
Q Consensus 336 --g~I~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~ 387 (432)
..+.+||+++.+-.. .+.........+...+..++.|+.++ .+.+||+.+.+
T Consensus 218 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 218 VRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 468999998754322 22211122233344567777777654 47888887653
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.11 E-value=0.33 Score=50.12 Aligned_cols=216 Identities=11% Similarity=0.038 Sum_probs=124.6
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCE-EEEEeCCCcEEEEeCCCC----ceeEEEe-CCCceeeEE--EC
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDK-LYSGSRDGTVQLWDCHTG----QSASVIN-LGAEVGSLI--CE 242 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~-l~s~s~Dg~v~iWd~~~~----~~~~~~~-~~~~~~~~~--~~ 242 (432)
..|+..++... ... .+......+.+|+|++.... +++-...+.|+.+++... .....+. .......++ ..
T Consensus 404 ~~Ir~i~l~~~-~~~-~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 404 HEVRKMTLDRS-EYT-SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp SSEEEECTTSC-CCE-EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred cceeEeeccCC-cce-eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 44666666543 212 23334567789999885554 455556688999998753 2233333 112223333 34
Q ss_pred CCEEE-EE-cCCeEEEEEccCCceEee-cCCcCCEEEEEEcCC--EEEEEEC--CCcEEEEECCCCCCCccccceeeecc
Q 014003 243 GPWVF-VG-MPNVVKAWHIESSAEFSL-DGPVGEVYSMVVANE--MLFAGAQ--DGNILVWKGIPNTQNPFQLAALLKGH 315 (432)
Q Consensus 243 ~~~l~-~~-~~~~i~vwd~~~~~~~~~-~~~~~~v~~l~~~~~--~l~~g~~--dg~i~~wd~~~~~~~~~~~~~~~~~h 315 (432)
+..|+ +. ..+.|.+.++.......+ .........|++++. .|+.+.. .+.|...++..... ...+...
T Consensus 482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-----~~lv~~~ 556 (791)
T 3m0c_C 482 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-----YSLVTEN 556 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-----EEEECSS
T ss_pred CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-----EEEEeCC
Confidence 54444 33 567899999887654433 234456788999875 5555443 36788888865431 1222223
Q ss_pred ccCeEEEEEe--CCEEEEE-eCCCeEEEEECCCCceEEEecC--CCCCcEEEEEcCCEEEEE-eCCCcEEEEEcCCCCce
Q 014003 316 TRPVTCLAVG--GKRLYSG-SMDNTIRVWDLDTLEAVMTLNG--HTDAPMSLLCWDQYLLSC-SLDNTIKVWIMTEEGNL 389 (432)
Q Consensus 316 ~~~v~~l~~~--~~~l~sg-s~dg~I~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~ 389 (432)
-.....|+++ +..|+.+ ...+.|...|+........+.. .-.....++..+++|+.+ ...+.|...|..+++.+
T Consensus 557 l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 557 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCC
T ss_pred CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcce
Confidence 3456788887 5566555 4567899999875544433332 223456777775555544 45678888887776655
Q ss_pred eEEe
Q 014003 390 EVAY 393 (432)
Q Consensus 390 ~~~~ 393 (432)
..+.
T Consensus 637 ~~l~ 640 (791)
T 3m0c_C 637 NLLA 640 (791)
T ss_dssp EEEE
T ss_pred EEee
Confidence 5543
No 293
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.11 E-value=0.086 Score=48.25 Aligned_cols=187 Identities=9% Similarity=-0.012 Sum_probs=101.0
Q ss_pred ccCcEEEEEecCCCCEEEEEeCCCcE-EEEeCCCCceeEEEe--CCCceeeEE--ECCCEEEEEcCCeEEEEEccCCceE
Q 014003 191 HKKAVSGIALPLRSDKLYSGSRDGTV-QLWDCHTGQSASVIN--LGAEVGSLI--CEGPWVFVGMPNVVKAWHIESSAEF 265 (432)
Q Consensus 191 H~~~V~~l~~~~~~~~l~s~s~Dg~v-~iWd~~~~~~~~~~~--~~~~~~~~~--~~~~~l~~~~~~~i~vwd~~~~~~~ 265 (432)
+.+.+..+.+.+++..++.+ .+|.| +-.| .|+.=.... ....+..+. +++.+++++..+.+..-+-..+...
T Consensus 120 ~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW 196 (327)
T 2xbg_A 120 LPGSPRLIKALGNGSAEMIT-NVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAW 196 (327)
T ss_dssp CSSCEEEEEEEETTEEEEEE-TTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSC
T ss_pred CCCCeEEEEEECCCCEEEEe-CCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCce
Confidence 34567888876666655554 45654 3223 233222222 122333333 3567777776666554332112211
Q ss_pred --eecCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceee-eccccCeEEEEEe-CCEEEEEeCCCeEEE
Q 014003 266 --SLDGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALL-KGHTRPVTCLAVG-GKRLYSGSMDNTIRV 340 (432)
Q Consensus 266 --~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~-~~h~~~v~~l~~~-~~~l~sgs~dg~I~v 340 (432)
........+..+.+.++ .+++++.+|.+++.+...+.. +..+..- ..+...+..+.+. ...++.++.+|.| .
T Consensus 197 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~t--W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~ 273 (327)
T 2xbg_A 197 EPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSEN--WGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-L 273 (327)
T ss_dssp EEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEE--ECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-E
T ss_pred eECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCe--eEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-E
Confidence 12234567788888776 666777888887764222211 1111110 0122357788886 3344444557777 4
Q ss_pred EECCCCceEEEec---CCCCCcEEEEEc-CCEEEEEeCCCcEEEEEc
Q 014003 341 WDLDTLEAVMTLN---GHTDAPMSLLCW-DQYLLSCSLDNTIKVWIM 383 (432)
Q Consensus 341 wd~~~~~~~~~~~---~~~~~v~~~~~~-~~~l~s~s~dg~i~iwd~ 383 (432)
+..+.++.-..+. .....+..+.+. +..+++++.+|.|.-++-
T Consensus 274 ~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 274 CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred EeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 5555565544443 223456777775 677888889998776653
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.09 E-value=0.17 Score=46.42 Aligned_cols=188 Identities=13% Similarity=0.215 Sum_probs=119.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--E----CCC---EEEEE--c--CCeEEEEEc--cCCceEee
Q 014003 203 RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--C----EGP---WVFVG--M--PNVVKAWHI--ESSAEFSL 267 (432)
Q Consensus 203 ~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~----~~~---~l~~~--~--~~~i~vwd~--~~~~~~~~ 267 (432)
...+++.....+-+.++|+ +|+.+..+... ....+. + .+. +++++ . ++.|.+|++ .++.....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g-~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTG-KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECCS-CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccCC-CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 4466777778889999999 79988888753 333322 2 222 33444 3 578999977 44443333
Q ss_pred cC-------CcCCEEEEEE--cCC----EEEEEECCCcEEEEECCCCCC--CccccceeeeccccCeEEEEEe--CCEEE
Q 014003 268 DG-------PVGEVYSMVV--ANE----MLFAGAQDGNILVWKGIPNTQ--NPFQLAALLKGHTRPVTCLAVG--GKRLY 330 (432)
Q Consensus 268 ~~-------~~~~v~~l~~--~~~----~l~~g~~dg~i~~wd~~~~~~--~~~~~~~~~~~h~~~v~~l~~~--~~~l~ 330 (432)
.. ....++.+++ ++. ++++...+|.+..|++..... ...++++.+... ..+-.+..+ ...|+
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEE
Confidence 11 1145666666 542 688899999999999854211 124556666643 456666776 68999
Q ss_pred EEeCCCeEEEEECC-----CCceEEEec-CCC-CCcEEEEEc----CC-EEEEEe-CCCcEEEEEcC-CCCceeEEe
Q 014003 331 SGSMDNTIRVWDLD-----TLEAVMTLN-GHT-DAPMSLLCW----DQ-YLLSCS-LDNTIKVWIMT-EEGNLEVAY 393 (432)
Q Consensus 331 sgs~dg~I~vwd~~-----~~~~~~~~~-~~~-~~v~~~~~~----~~-~l~s~s-~dg~i~iwd~~-~~~~~~~~~ 393 (432)
.+-++.-|..+|.+ +++.+..+. ++- ..+..++.. ++ +|++++ .+++..+||.. +.+.+..+.
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 99999878888865 455666553 222 356666653 23 666666 67799999997 455555553
No 295
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.00 E-value=0.2 Score=45.55 Aligned_cols=213 Identities=10% Similarity=0.055 Sum_probs=122.7
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEE-EEEeCCCcEEEEeCCC----CceeEEEeCC-CceeeEEE--C
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKL-YSGSRDGTVQLWDCHT----GQSASVINLG-AEVGSLIC--E 242 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l-~s~s~Dg~v~iWd~~~----~~~~~~~~~~-~~~~~~~~--~ 242 (432)
..|+..+++.. .....+ ..-....+++|++.++.| ++-..++.|..+++.. ......+... .....+.. .
T Consensus 10 ~~I~~i~~~~~-~~~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 10 HEVRKMTLDRS-EYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp SSEEEEETTSC-CCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CeEEEEECCCc-ceEehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 44788888765 222223 334667899999866555 4555568999999876 2222223221 22334442 3
Q ss_pred CCEEE-EE-cCCeEEEEEccCCceEee-cCCcCCEEEEEEcCC--EEEEEECC--CcEEEEECCCCCCCccccceee-ec
Q 014003 243 GPWVF-VG-MPNVVKAWHIESSAEFSL-DGPVGEVYSMVVANE--MLFAGAQD--GNILVWKGIPNTQNPFQLAALL-KG 314 (432)
Q Consensus 243 ~~~l~-~~-~~~~i~vwd~~~~~~~~~-~~~~~~v~~l~~~~~--~l~~g~~d--g~i~~wd~~~~~~~~~~~~~~~-~~ 314 (432)
+..++ +. ..+.|.+.++.......+ .........++++|. .++.+... +.|..+++.... ...+ ..
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~------~~~~~~~ 161 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTE 161 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC------EEEEECS
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC------eEEEEEC
Confidence 44443 43 567899999876544322 233456788899864 55444443 688888876432 1111 12
Q ss_pred cccCeEEEEEe--CCEEEEEe-CCCeEEEEECCCCceEEEe-c--CCCCCcEEEEEcC-CEEEEEeCCCcEEEEEcCCCC
Q 014003 315 HTRPVTCLAVG--GKRLYSGS-MDNTIRVWDLDTLEAVMTL-N--GHTDAPMSLLCWD-QYLLSCSLDNTIKVWIMTEEG 387 (432)
Q Consensus 315 h~~~v~~l~~~--~~~l~sgs-~dg~I~vwd~~~~~~~~~~-~--~~~~~v~~~~~~~-~~l~s~s~dg~i~iwd~~~~~ 387 (432)
.-.....|+++ +..|+.+. ..+.|..+|+..... ..+ . ..-.....++..+ ..+++-...+.|..++..+++
T Consensus 162 ~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCc
Confidence 23345678887 55665554 567999999874332 222 2 1223456666674 455555567789999876665
Q ss_pred ceeEE
Q 014003 388 NLEVA 392 (432)
Q Consensus 388 ~~~~~ 392 (432)
.+..+
T Consensus 241 ~~~~i 245 (316)
T 1ijq_A 241 DVNLL 245 (316)
T ss_dssp CCEEE
T ss_pred ceEEE
Confidence 54444
No 296
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.99 E-value=0.17 Score=48.20 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=83.6
Q ss_pred cEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--ECCCEEEEEcC-----C-eEEEEEccCCce
Q 014003 194 AVSGIALPL-RSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVFVGMP-----N-VVKAWHIESSAE 264 (432)
Q Consensus 194 ~V~~l~~~~-~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~-----~-~i~vwd~~~~~~ 264 (432)
....|+++| ++..|+.+...+.|+.+|+++++.............+. .++..+++... . .+..++......
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~ 217 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK 217 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence 457889998 45666666665889999998877665555444444444 46674554422 1 233344332221
Q ss_pred --EeecCCcCCEEEEEEcC-C--EEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEE-EeCCC
Q 014003 265 --FSLDGPVGEVYSMVVAN-E--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYS-GSMDN 336 (432)
Q Consensus 265 --~~~~~~~~~v~~l~~~~-~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s-gs~dg 336 (432)
..+. .......+++++ + ++++-..++.|..+|...+.. ..+.... .......++++ +++|+. -...+
T Consensus 218 ~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~---~~~~~~~-~~~~P~gia~~pdG~~lyv~d~~~~ 292 (430)
T 3tc9_A 218 VITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET---TPLFTIQ-DSGWEFHIQFHPSGNYAYIVVVNQH 292 (430)
T ss_dssp SEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE---EEEEECS-SSSCCEEEEECTTSSEEEEEETTTT
T ss_pred eeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE---EEEEEcC-CCCcceeEEEcCCCCEEEEEECCCC
Confidence 1111 123345677877 4 444555678899999876431 0111111 12345678887 775544 45678
Q ss_pred eEEEEECC
Q 014003 337 TIRVWDLD 344 (432)
Q Consensus 337 ~I~vwd~~ 344 (432)
.|..++..
T Consensus 293 ~I~~~~~d 300 (430)
T 3tc9_A 293 YILRSDYD 300 (430)
T ss_dssp EEEEEEEE
T ss_pred EEEEEeCC
Confidence 99998765
No 297
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.88 E-value=0.22 Score=45.43 Aligned_cols=175 Identities=6% Similarity=-0.003 Sum_probs=96.0
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeC--CCCceeEEEeCCCceeeEE
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDC--HTGQSASVINLGAEVGSLI 240 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~--~~~~~~~~~~~~~~~~~~~ 240 (432)
.++.+...+..+..|-....+.+. .++...+.++++.+++.+++.+...+..+-+|- .+-+.+. .........+.
T Consensus 135 ~~~~~~~g~v~~S~DgG~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~ 211 (327)
T 2xbg_A 135 AEMITNVGAIYRTKDSGKNWQALV--QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN-RTTSRRLHNMG 211 (327)
T ss_dssp EEEEETTCCEEEESSTTSSEEEEE--CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE-CCSSSCEEEEE
T ss_pred EEEEeCCccEEEEcCCCCCCEEee--cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC-CCCCCccceeE
Confidence 334443333345555444444332 356678999999998887776654444444553 2222221 11222333333
Q ss_pred --ECCCEEEEEcCCeEEEEEccCCceEeecC-----CcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceee
Q 014003 241 --CEGPWVFVGMPNVVKAWHIESSAEFSLDG-----PVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALL 312 (432)
Q Consensus 241 --~~~~~l~~~~~~~i~vwd~~~~~~~~~~~-----~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~ 312 (432)
.++.+++++.++.+...+...++...... ....+.++.+.++ .+++++.+|.| .+....+.. +......
T Consensus 212 ~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~t--W~~~~~~ 288 (327)
T 2xbg_A 212 FTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQT--WQQDVDV 288 (327)
T ss_dssp ECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSS--CEECGGG
T ss_pred ECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcc--cEEcCcc
Confidence 46677778888887776533344332211 1235788888765 55556667777 344444432 3222211
Q ss_pred eccccCeEEEEEe-CCEEEEEeCCCeEEEEEC
Q 014003 313 KGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDL 343 (432)
Q Consensus 313 ~~h~~~v~~l~~~-~~~l~sgs~dg~I~vwd~ 343 (432)
......+.++.+. +..+++++.+|.|.-++-
T Consensus 289 ~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 289 KKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp TTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred CCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 1223456778774 677888888998877763
No 298
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.80 E-value=0.59 Score=48.05 Aligned_cols=187 Identities=15% Similarity=0.170 Sum_probs=108.2
Q ss_pred cCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEe-CCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeec--
Q 014003 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVIN-LGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLD-- 268 (432)
Q Consensus 192 ~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~-- 268 (432)
...|.++.-..++ .|..|+.+| +..+|..+.+...... ....+..+......+.++..+.+..+|..+++.....
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~~~~~~ 139 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKLTSFDTR 139 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCEEEECHH
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeEEEeccC
Confidence 3568888776665 566666665 7889988764332100 1122333433333454454557888998876654331
Q ss_pred ---CCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccccceeeec----cccCeEEEEEe--CCEEEEEeCCCeE
Q 014003 269 ---GPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG----HTRPVTCLAVG--GKRLYSGSMDNTI 338 (432)
Q Consensus 269 ---~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~----h~~~v~~l~~~--~~~l~sgs~dg~I 338 (432)
.....|.++..+.+ .+.+|+.+ -|..+|..++.. ... .... ....|.++..+ +..|..|+. +-+
T Consensus 140 ~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~---~~~-~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl 213 (758)
T 3ott_A 140 RNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKF---EGI-PLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYL 213 (758)
T ss_dssp HHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEE---EEE-CCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEE
T ss_pred CCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCce---EEe-cCCCccccccceeEEEEEECCCCEEEEEEC-CCC
Confidence 22456888888765 66667765 477888765431 111 0111 12347888877 566667764 458
Q ss_pred EEEECCCCceEEEecCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEcCCCC
Q 014003 339 RVWDLDTLEAVMTLNGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEG 387 (432)
Q Consensus 339 ~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~ 387 (432)
..+|..+++...........|.++..+ ...|..|+. +-+.+++..+..
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~ 262 (758)
T 3ott_A 214 FQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTP 262 (758)
T ss_dssp EEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEET-TEEEEECCTTSC
T ss_pred eEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCc
Confidence 889988765432111122346677666 455666664 457888876544
No 299
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.78 E-value=0.53 Score=47.26 Aligned_cols=215 Identities=12% Similarity=0.071 Sum_probs=129.8
Q ss_pred CCeEEEEeCCCCcE-EEEEEecccCcEEEEEecCCCCEEE-EEeCCCcEEEEeCCCCceeEEEeCC-CceeeEE--ECCC
Q 014003 170 CRFWHSWFCGEGFT-MLAKLEGHKKAVSGIALPLRSDKLY-SGSRDGTVQLWDCHTGQSASVINLG-AEVGSLI--CEGP 244 (432)
Q Consensus 170 d~~i~vw~~~~~~~-~~~~l~~H~~~V~~l~~~~~~~~l~-s~s~Dg~v~iWd~~~~~~~~~~~~~-~~~~~~~--~~~~ 244 (432)
...|+..++++... ....+ ..-..+.+|+|++.+..|+ +-..++.|..++++.......+... .....++ ..+.
T Consensus 14 ~~~I~~i~l~~~~~~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~ 92 (628)
T 4a0p_A 14 RADIRRISLETNNNNVAIPL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK 92 (628)
T ss_dssp TTEEEEEESSCTTCEEECCC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred CCcEEEEECCCCCcceEEEc-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence 35688888865422 11122 2245688999998666555 5556789999998866555444433 2233343 3344
Q ss_pred EE-EEE-cCCeEEEEEccCCceEee-cCCcCCEEEEEEcCC--EEEEEEC--CCcEEEEECCCCCCCccccceeeecccc
Q 014003 245 WV-FVG-MPNVVKAWHIESSAEFSL-DGPVGEVYSMVVANE--MLFAGAQ--DGNILVWKGIPNTQNPFQLAALLKGHTR 317 (432)
Q Consensus 245 ~l-~~~-~~~~i~vwd~~~~~~~~~-~~~~~~v~~l~~~~~--~l~~g~~--dg~i~~wd~~~~~~~~~~~~~~~~~h~~ 317 (432)
.| .+. ..+.|.+.+++......+ ........+++++|. .|+.... .+.|...++..... ..+-..-.
T Consensus 93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~------~~l~~~~~ 166 (628)
T 4a0p_A 93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER------TTLVPNVG 166 (628)
T ss_dssp EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------EEEECSCS
T ss_pred EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce------EEEECCCC
Confidence 44 443 457888899876543332 244456789999874 5555543 56788888765432 11212334
Q ss_pred CeEEEEEe--CCEEEEEe-CCCeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEE-eCCCcEEEEEcCCCCceeEE
Q 014003 318 PVTCLAVG--GKRLYSGS-MDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSC-SLDNTIKVWIMTEEGNLEVA 392 (432)
Q Consensus 318 ~v~~l~~~--~~~l~sgs-~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~ 392 (432)
....|+++ ++.|+.+. ..+.|..+|+..... ..+...-.....++..++.|+.+ ...+.|...|..+++....+
T Consensus 167 ~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 167 RANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEE
Confidence 56788887 56665554 568999999876444 33433334456777775555544 45788888887666544433
No 300
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.73 E-value=0.073 Score=54.90 Aligned_cols=183 Identities=10% Similarity=0.044 Sum_probs=97.9
Q ss_pred eEE-ECCCEEEEEc--CC----eEEEEEccCC-ceEeecCCcCCEEEEEEcCC--EEEEEECC-----CcEEEEECCCCC
Q 014003 238 SLI-CEGPWVFVGM--PN----VVKAWHIESS-AEFSLDGPVGEVYSMVVANE--MLFAGAQD-----GNILVWKGIPNT 302 (432)
Q Consensus 238 ~~~-~~~~~l~~~~--~~----~i~vwd~~~~-~~~~~~~~~~~v~~l~~~~~--~l~~g~~d-----g~i~~wd~~~~~ 302 (432)
.+. ++++.++-+. +| .|+++|+.++ +.+.. ........+.|+++ .|+....+ ..|+.+++.++.
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~ 258 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQ 258 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCG
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCc
Confidence 345 5677666432 22 4999999988 53210 00111235778887 55555544 358888887653
Q ss_pred CCccccceeee-ccccCeEEEEEe--CCEEEEEeC---CCeEEEEECCCCc-eE--EEe-cCCCCCcEEEEEc-CCEEEE
Q 014003 303 QNPFQLAALLK-GHTRPVTCLAVG--GKRLYSGSM---DNTIRVWDLDTLE-AV--MTL-NGHTDAPMSLLCW-DQYLLS 371 (432)
Q Consensus 303 ~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~sgs~---dg~I~vwd~~~~~-~~--~~~-~~~~~~v~~~~~~-~~~l~s 371 (432)
. +....+. ........+.++ |++|+..+. ...|.++|+.++. .. ..+ ........+..+. ++.|+.
T Consensus 259 ~---~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~ 335 (751)
T 2xe4_A 259 S---EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVI 335 (751)
T ss_dssp G---GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEE
T ss_pred h---hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEE
Confidence 2 1112222 122334566776 887776552 4578899998762 22 334 3344556666633 665554
Q ss_pred EeC-C----CcEEEEEcCCCCceeE-EeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEe
Q 014003 372 CSL-D----NTIKVWIMTEEGNLEV-AYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLY 428 (432)
Q Consensus 372 ~s~-d----g~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iw 428 (432)
.+. + ..|..+|+.+...... +..+........+ ++.++.++++...+|..++|
T Consensus 336 ~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~----~~~~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 336 LTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESI----AVRSNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEE----EECSSEEEEEEEETTEEEEE
T ss_pred EeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEE----EEECCEEEEEEEeCCEEEEE
Confidence 443 3 2566667654323233 3444333222222 33455578888888875554
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.73 E-value=0.014 Score=59.69 Aligned_cols=171 Identities=8% Similarity=-0.017 Sum_probs=93.1
Q ss_pred CCceEEeeccCce-eeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeC-C-CcEEEEeCCCCceeE
Q 014003 152 PKNVCYHWLSGNC-VKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR-D-GTVQLWDCHTGQSAS 228 (432)
Q Consensus 152 ~~~~~~~~~~~~~-~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~-D-g~v~iWd~~~~~~~~ 228 (432)
+..+++.|....+ ++....+.|.+.+++.... ...+.........|+++|.+.+|+.+.. . +.|...++..... .
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~-~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~ 532 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-Y 532 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE-EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-C
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCce-EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-e
Confidence 3466777766644 4545678899999876522 2222222345678888886555554432 2 5566655542211 1
Q ss_pred EEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECCCCCCCc
Q 014003 229 VINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGIPNTQNP 305 (432)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~~~~~~~ 305 (432)
.+ ..........|+++++ ++++-...+.|..+|+.....
T Consensus 533 ~l------------------------------------~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-- 574 (699)
T 1n7d_A 533 SL------------------------------------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-- 574 (699)
T ss_dssp EE------------------------------------SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC--
T ss_pred EE------------------------------------EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce--
Confidence 11 0111223446777754 445555667899998865321
Q ss_pred cccceeeeccccCeEEEEEeCCE-EEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEE
Q 014003 306 FQLAALLKGHTRPVTCLAVGGKR-LYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLL 363 (432)
Q Consensus 306 ~~~~~~~~~h~~~v~~l~~~~~~-l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~ 363 (432)
+.+............|++++.. +++....+.|..+|..+++.+..+.........+.
T Consensus 575 -~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~ 632 (699)
T 1n7d_A 575 -KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 632 (699)
T ss_dssp -EEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCC
T ss_pred -EEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEE
Confidence 1111111111223355666444 44555678999999989988887754333344443
No 302
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.73 E-value=0.05 Score=58.70 Aligned_cols=212 Identities=10% Similarity=0.112 Sum_probs=125.6
Q ss_pred CcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC-EEEEEECCCc
Q 014003 214 GTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGN 292 (432)
Q Consensus 214 g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~-~l~~g~~dg~ 292 (432)
.+|.|-|+..+..+...+......-+.+..++++.-....+.++|+++...+........|.-..|-.. .|+.. .+..
T Consensus 48 ~~vvIidl~~~~~~~rrpi~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lV-T~~a 126 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV-TDNA 126 (1630)
T ss_pred ceEEEEECCCCCCcccccccchhhccCCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEE-cCCe
Confidence 468888888776665555555555555677777777788999999998887766666667777888766 44333 4568
Q ss_pred EEEEECCCCCCCccccceeeecc----ccCeEEEEEe--CCEEEEEe-------CCCeEEEEECCCCceEEEecCCCCCc
Q 014003 293 ILVWKGIPNTQNPFQLAALLKGH----TRPVTCLAVG--GKRLYSGS-------MDNTIRVWDLDTLEAVMTLNGHTDAP 359 (432)
Q Consensus 293 i~~wd~~~~~~~~~~~~~~~~~h----~~~v~~l~~~--~~~l~sgs-------~dg~I~vwd~~~~~~~~~~~~~~~~v 359 (432)
|+.|++.... .+...+.-| ...|..-..+ .++++..+ ..|.+.+|+.+. +.-+.+.||.+.-
T Consensus 127 VyHW~~~~~s----~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F 201 (1630)
T 1xi4_A 127 VYHWSMEGES----QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASF 201 (1630)
T ss_pred EEEeccCCCC----ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhh
Confidence 9999996532 233334333 2234333333 55554322 458899999864 4445667776655
Q ss_pred EEEEEcC-----CEEEEEeC---CCcEEEEEcCCC---Cce-----eEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCC
Q 014003 360 MSLLCWD-----QYLLSCSL---DNTIKVWIMTEE---GNL-----EVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD 423 (432)
Q Consensus 360 ~~~~~~~-----~~l~s~s~---dg~i~iwd~~~~---~~~-----~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg 423 (432)
..+...| ..++.+.. .+.++|-++... ... ..+.-.........++..-++.-. ++..-+.-|
T Consensus 202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G 280 (1630)
T 1xi4_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYG 280 (1630)
T ss_pred heeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCc
Confidence 4444442 22222222 268889888553 110 011111111222223333355555 677778899
Q ss_pred eEEEeeCCC
Q 014003 424 SVHLYELPS 432 (432)
Q Consensus 424 ~I~iwdl~s 432 (432)
.|++||+.|
T Consensus 281 ~~~~~d~~t 289 (1630)
T 1xi4_A 281 YIHLYDLET 289 (1630)
T ss_pred eEEEEeccc
Confidence 999999976
No 303
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.64 E-value=0.097 Score=47.29 Aligned_cols=212 Identities=13% Similarity=0.140 Sum_probs=108.4
Q ss_pred CeEEEEeCCCCc-EEEEEEecccCcEEEEEecCCCCEEEEEeC----C-----CcEEEEeCCCCceeEEEeCCCc---ee
Q 014003 171 RFWHSWFCGEGF-TMLAKLEGHKKAVSGIALPLRSDKLYSGSR----D-----GTVQLWDCHTGQSASVINLGAE---VG 237 (432)
Q Consensus 171 ~~i~vw~~~~~~-~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~----D-----g~v~iWd~~~~~~~~~~~~~~~---~~ 237 (432)
..+.+||..+.. ..+..+..-...- +++. .++..++.|+. + ..+.++|+.+.+-...-....+ ..
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 116 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 116 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence 358888886651 1111111111111 1222 25666666665 2 4688899887754333222211 12
Q ss_pred eEEECCCEEEEEc------CCeEEEEEccCCceEeecC---CcCCEEEEEEcCCEEEEEECC-----CcEEEEECCCCCC
Q 014003 238 SLICEGPWVFVGM------PNVVKAWHIESSAEFSLDG---PVGEVYSMVVANEMLFAGAQD-----GNILVWKGIPNTQ 303 (432)
Q Consensus 238 ~~~~~~~~l~~~~------~~~i~vwd~~~~~~~~~~~---~~~~v~~l~~~~~~l~~g~~d-----g~i~~wd~~~~~~ 303 (432)
....++.+++.|. ...+.+||+.+.+-..... ....-.++.....+++.|+.+ ..+.+||+.+.+
T Consensus 117 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~- 195 (308)
T 1zgk_A 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNE- 195 (308)
T ss_dssp EEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE-
T ss_pred EEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCe-
Confidence 2334666555542 3568889988765332211 111222333333366666654 458899987764
Q ss_pred CccccceeeeccccCeEEEEEeCCEEEEEeCC-----CeEEEEECCCCceEE--EecCCCCCcEEEEEcCCEEEEEeCC-
Q 014003 304 NPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD-----NTIRVWDLDTLEAVM--TLNGHTDAPMSLLCWDQYLLSCSLD- 375 (432)
Q Consensus 304 ~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~d-----g~I~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~s~d- 375 (432)
+..+..+........++.+++..++.|+.+ ..+.+||+++.+-.. .+.........+...+.+++.|+.+
T Consensus 196 --W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 196 --WRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG 273 (308)
T ss_dssp --EEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred --EeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCC
Confidence 333333322222333445567777777764 569999998764322 2221122223334446777777654
Q ss_pred ----CcEEEEEcCCCC
Q 014003 376 ----NTIKVWIMTEEG 387 (432)
Q Consensus 376 ----g~i~iwd~~~~~ 387 (432)
..+.+||+.+.+
T Consensus 274 ~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 274 HTFLDSVECYDPDTDT 289 (308)
T ss_dssp SCBCCEEEEEETTTTE
T ss_pred CcccceEEEEcCCCCE
Confidence 346777776643
No 304
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=96.60 E-value=0.36 Score=43.04 Aligned_cols=218 Identities=13% Similarity=0.075 Sum_probs=121.7
Q ss_pred CcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeE-EEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceE-eecCC
Q 014003 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSAS-VINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEF-SLDGP 270 (432)
Q Consensus 193 ~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~-~~~~~ 270 (432)
..|..|+.... ..+.-. ||.|..|-....-.+. .......+..+.+.....++-.++.|..|-......+ .....
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~~G~v~~wG~n~~Gqlg~P~~~ 100 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEA 100 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEETTEEEEEECCTTSTTCCCGGG
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEECCEEEEeeCCCCCCCCCCccc
Confidence 45777775432 222234 8999999765432111 1112235566666555444335999999976543221 11112
Q ss_pred cCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEE
Q 014003 271 VGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVM 350 (432)
Q Consensus 271 ~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~ 350 (432)
...|..++...+..++-. +|.|+.|-.....+.. . .......|..++....+.+.-. ||.|+.|-....-.+.
T Consensus 101 ~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg----~-~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg 173 (282)
T 3qhy_B 101 RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTT----V-PAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTT 173 (282)
T ss_dssp SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTS----C-CGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTS
T ss_pred CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCC----C-CccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCC
Confidence 347888888888655566 9999999765543211 1 1112345777777655555555 8999999865422211
Q ss_pred EecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEee
Q 014003 351 TLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYE 429 (432)
Q Consensus 351 ~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwd 429 (432)
.-..-...|..++.-..+.+.- .||.|..|-......+.........+..++. . ... .++.. ||.|..|-
T Consensus 174 ~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~----G-~~h-~~al~--~g~v~~wG 243 (282)
T 3qhy_B 174 VPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIAS----G-EWY-SLALK--NGKVIAWG 243 (282)
T ss_dssp CCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEE----C-SSC-EEEEE--TTEEEEES
T ss_pred CceecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEc----C-CCE-EEEEE--CCEEEEec
Confidence 1111134577777775555555 6999999977665444322222233444443 1 122 23333 88888884
No 305
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.56 E-value=0.17 Score=45.58 Aligned_cols=183 Identities=13% Similarity=0.102 Sum_probs=98.7
Q ss_pred ccCceeeCCCC----CeEEEEeCCCC-cEEEEEEecccCcEEEEEecCCCCEEEEEeCC------CcEEEEeCCCCceeE
Q 014003 160 LSGNCVKGDEC----RFWHSWFCGEG-FTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD------GTVQLWDCHTGQSAS 228 (432)
Q Consensus 160 ~~~~~~~g~~d----~~i~vw~~~~~-~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~D------g~v~iWd~~~~~~~~ 228 (432)
....++.|+.+ ..+.+||..+. ...+..+......-..+.+ +++.++.|+.+ ..+.+||..+.+-..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 33355566544 56888998765 2333322221111222222 56777777765 468899998876444
Q ss_pred EEeCCCc---eeeEEECCCEEEEEc----------CCeEEEEEccCCceEeecCC---cCCEEEEEEcCCEEEEEECC--
Q 014003 229 VINLGAE---VGSLICEGPWVFVGM----------PNVVKAWHIESSAEFSLDGP---VGEVYSMVVANEMLFAGAQD-- 290 (432)
Q Consensus 229 ~~~~~~~---~~~~~~~~~~l~~~~----------~~~i~vwd~~~~~~~~~~~~---~~~v~~l~~~~~~l~~g~~d-- 290 (432)
.-....+ ...+..++.+++.|. .+.+.+||+.+..=...... ...-..+.....+++.|+.+
T Consensus 133 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 212 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGL 212 (306)
T ss_dssp ECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETT
T ss_pred CCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCC
Confidence 3222211 122334666655542 45688999988753332221 11222333333366666543
Q ss_pred ---CcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCC-----CeEEEEECCCCc
Q 014003 291 ---GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD-----NTIRVWDLDTLE 347 (432)
Q Consensus 291 ---g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~d-----g~I~vwd~~~~~ 347 (432)
..+.+||+.+.+ +..+..+........++.+++..++.|+.+ ..+.+||+++.+
T Consensus 213 ~~~~~~~~yd~~~~~---W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 213 GGLDNVEYYDIKLNE---WKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEBCCEEEEETTTTE---EEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCCceEEEeeCCCCc---EEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 468899988764 333333333333344555567777888754 467888877643
No 306
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.56 E-value=0.75 Score=46.08 Aligned_cols=214 Identities=12% Similarity=0.093 Sum_probs=115.2
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEE-eCCCcEEEEeCCCCce-eEEEeCC-CceeeEE--ECCCE
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSG-SRDGTVQLWDCHTGQS-ASVINLG-AEVGSLI--CEGPW 245 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~-s~Dg~v~iWd~~~~~~-~~~~~~~-~~~~~~~--~~~~~ 245 (432)
..|+..+++........+...-....+|+|++.++.|+-+ ...+.|..++++.... ...+... .....++ ..+..
T Consensus 18 ~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ 97 (619)
T 3s94_A 18 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEK 97 (619)
T ss_dssp SBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTE
T ss_pred ccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCE
Confidence 5578888865421222233344567899999866666554 4467898999876532 2233322 2333444 33444
Q ss_pred EE-EE-cCCeEEEEEccCCceEeec-CCcCCEEEEEEcCC--EEEEEEC--CCcEEEEECCCCCCCccccceeeeccccC
Q 014003 246 VF-VG-MPNVVKAWHIESSAEFSLD-GPVGEVYSMVVANE--MLFAGAQ--DGNILVWKGIPNTQNPFQLAALLKGHTRP 318 (432)
Q Consensus 246 l~-~~-~~~~i~vwd~~~~~~~~~~-~~~~~v~~l~~~~~--~l~~g~~--dg~i~~wd~~~~~~~~~~~~~~~~~h~~~ 318 (432)
++ +. ..+.|.+.+++......+. ........++++|. .|+.+.. .+.|...++..... .......-..
T Consensus 98 ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~-----~~l~~~~~~~ 172 (619)
T 3s94_A 98 LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-----FIIINSEIYW 172 (619)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----EEEECSSCSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-----EEEEeCCCCC
Confidence 44 43 5678999998876543332 34445667888764 5555543 46777777664321 1112222344
Q ss_pred eEEEEEe--CCEEEEE-eCCCeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEE-eCCCcEEEEEcCCCCce
Q 014003 319 VTCLAVG--GKRLYSG-SMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSC-SLDNTIKVWIMTEEGNL 389 (432)
Q Consensus 319 v~~l~~~--~~~l~sg-s~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~ 389 (432)
...|+++ ++.|+.+ ...+.|...|+..........+.-.....+++.++.|+.+ ...+.|...|..+++..
T Consensus 173 P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 173 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESSSCCCC
T ss_pred CcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCccc
Confidence 5778887 5555555 4567899999875443322222222345666665555544 45678888888776543
No 307
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.47 E-value=1.3 Score=47.84 Aligned_cols=166 Identities=14% Similarity=0.108 Sum_probs=104.7
Q ss_pred cEEEEeCCCCceeEEEeCCCc--eeeEEE------CCCEEEEEc-----------CCeEEEEEccCCce--EeecCCcCC
Q 014003 215 TVQLWDCHTGQSASVINLGAE--VGSLIC------EGPWVFVGM-----------PNVVKAWHIESSAE--FSLDGPVGE 273 (432)
Q Consensus 215 ~v~iWd~~~~~~~~~~~~~~~--~~~~~~------~~~~l~~~~-----------~~~i~vwd~~~~~~--~~~~~~~~~ 273 (432)
.|++.|..+.+.+..++.... +.++.. ...++++|. .|.|.++++..++. +......+.
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 477888888887777765543 333331 235666652 36799999875442 233445788
Q ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeeecccc-CeEEEEEeCCEEEEEeCCCeEEEEE--CCCCceEE
Q 014003 274 VYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHTR-PVTCLAVGGKRLYSGSMDNTIRVWD--LDTLEAVM 350 (432)
Q Consensus 274 v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~l~sgs~dg~I~vwd--~~~~~~~~ 350 (432)
+++++--.+++++|- ..+|++|++...+. +......... .+..+...+++++.|..-..|.++. ....+...
T Consensus 888 v~al~~~~g~Lla~i-g~~l~vy~l~~~~~----L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~ 962 (1158)
T 3ei3_A 888 VYSMVEFNGKLLASI-NSTVRLYEWTTEKE----LRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEE 962 (1158)
T ss_dssp EEEEEEETTEEEEEE-TTEEEEEEECTTSC----EEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEE
T ss_pred CEEEeeeCCEEEEEc-CCEEEEEECCCCce----EEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEE
Confidence 999987777666654 57999999976542 1111111111 1335555699999999887777654 43333322
Q ss_pred Ee-cCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEcCC
Q 014003 351 TL-NGHTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 351 ~~-~~~~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~ 385 (432)
.- ..+...++++.+- ...++.+..+|.+.+.....
T Consensus 963 ~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 963 IARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred EEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence 22 2234457777765 77889999999999997654
No 308
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.45 E-value=0.0076 Score=61.62 Aligned_cols=182 Identities=11% Similarity=0.061 Sum_probs=99.6
Q ss_pred EEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEE-EEECCCcEEEEECCCCCCCccccceeeeccccCeEE
Q 014003 245 WVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLF-AGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTC 321 (432)
Q Consensus 245 ~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~-~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 321 (432)
+++....+.|+..++..............+.++++++. .|+ +-...+.|+.+++...... ......+.........
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~-~~~~~~i~~~~~~P~g 457 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-SSYDTVISRDIQAPDG 457 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC--CCCCCBCCSCC--CCC
T ss_pred eEEecCccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCC-cceEEEEeCCCCCcce
Confidence 34444556788888877766554444455667888764 444 4445678999998751100 0011111111112334
Q ss_pred EEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEe-CC-CcEEEEEcCCCCceeEEee
Q 014003 322 LAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCS-LD-NTIKVWIMTEEGNLEVAYT 394 (432)
Q Consensus 322 l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s-~d-g~i~iwd~~~~~~~~~~~~ 394 (432)
|+++ ++++++-...+.|.++++........+.........++++ +.+|+.+. .. +.|.++++...........
T Consensus 458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~ 537 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 537 (699)
T ss_dssp EECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCS
T ss_pred EEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeC
Confidence 6664 4445555567899999987654443333222344556665 34444333 22 6787777754332222212
Q ss_pred ccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 395 HNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 395 ~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.......+++ +|++..++++-...+.|.++++.
T Consensus 538 ~l~~PnGlav----d~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 538 NIQWPNGITL----DLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp SCSSCCCEEE----CTTTCCEEEEETTTTEEEEECSS
T ss_pred CCCCccEEEE----eccCCEEEEEecCCCeEEEEccC
Confidence 2223355666 78766577777778889988864
No 309
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.43 E-value=0.25 Score=53.56 Aligned_cols=212 Identities=10% Similarity=0.102 Sum_probs=132.2
Q ss_pred CeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEE-CCCEEEEE
Q 014003 171 RFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLIC-EGPWVFVG 249 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 249 (432)
..|-|-|+..+..+...--.-.+.| .+|..+.+|-=. ..++.|+|+++.+.++.+....++....+ +...+..-
T Consensus 48 ~~vvIidl~~~~~~~rrpi~AdsAI----MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lV 122 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPISADSAI----MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV 122 (1630)
T ss_pred ceEEEEECCCCCCcccccccchhhc----cCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEE
Confidence 3677788866544332222222222 467776665554 68899999999999999999888877775 66677777
Q ss_pred cCCeEEEEEccCCce-E-eecC----CcCCEEEEEEcCC---EEEEEE------CCCcEEEEECCCCCCCccccceeeec
Q 014003 250 MPNVVKAWHIESSAE-F-SLDG----PVGEVYSMVVANE---MLFAGA------QDGNILVWKGIPNTQNPFQLAALLKG 314 (432)
Q Consensus 250 ~~~~i~vwd~~~~~~-~-~~~~----~~~~v~~l~~~~~---~l~~g~------~dg~i~~wd~~~~~~~~~~~~~~~~~ 314 (432)
.+..|..|++..... . .+.. ...+|.....+++ .+++|- -.|.+.+|....+. .+.+.|
T Consensus 123 T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~ieg 196 (1630)
T 1xi4_A 123 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEG 196 (1630)
T ss_pred cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhH
Confidence 899999999965321 1 1111 1466777777777 344433 45889999887764 345667
Q ss_pred cccCeEEEEEe-----CCEEEEEeC---CCeEEEEECCCC---ce------EEEecC---CCCCcEEEEEc--CCEEEEE
Q 014003 315 HTRPVTCLAVG-----GKRLYSGSM---DNTIRVWDLDTL---EA------VMTLNG---HTDAPMSLLCW--DQYLLSC 372 (432)
Q Consensus 315 h~~~v~~l~~~-----~~~l~sgs~---dg~I~vwd~~~~---~~------~~~~~~---~~~~v~~~~~~--~~~l~s~ 372 (432)
|......+..+ .+.++.+.. .+.++|.++... .+ +..+-. ..+-..++..+ -..+...
T Consensus 197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~i 276 (1630)
T 1xi4_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (1630)
T ss_pred hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEE
Confidence 76655555443 122332222 278999988542 11 111111 12223444445 4678888
Q ss_pred eCCCcEEEEEcCCCCceeEEe
Q 014003 373 SLDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 373 s~dg~i~iwd~~~~~~~~~~~ 393 (432)
+.-|.|.++|+.++.++..-.
T Consensus 277 tk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 277 TKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred ecCceEEEEecccchhhhhcc
Confidence 899999999999987765444
No 310
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.34 E-value=0.75 Score=43.78 Aligned_cols=231 Identities=12% Similarity=0.040 Sum_probs=120.3
Q ss_pred cEEEEEecCC--CCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEE--ECCCEEEEEcCC-----eEEEEEccCCce
Q 014003 194 AVSGIALPLR--SDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLI--CEGPWVFVGMPN-----VVKAWHIESSAE 264 (432)
Q Consensus 194 ~V~~l~~~~~--~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~-----~i~vwd~~~~~~ 264 (432)
....|+|+|+ +..|+.+...+.|+.+|..+++.............+. .++.++++...+ .+...+......
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~ 219 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT 219 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence 4568999984 4455555544899999998887665554333344444 466655554321 233333222211
Q ss_pred --EeecCCcCCEEEEEEcC-C-EEE-EEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CCEEEEE-eCCC
Q 014003 265 --FSLDGPVGEVYSMVVAN-E-MLF-AGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSG-SMDN 336 (432)
Q Consensus 265 --~~~~~~~~~v~~l~~~~-~-~l~-~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sg-s~dg 336 (432)
.... .......+++++ + .|+ +-..++.|+.+|..++... ..+... +....-..++++ +++|+.+ ...+
T Consensus 220 ~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~--~~~~~~-~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 220 ERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT--EEEVMM-DTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp CEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE--EEEEEC-SCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred cccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE--EEEecc-CCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 0111 122344567777 3 444 4446678999988755310 111111 111222358886 7755554 4568
Q ss_pred eEEEEECC--CCce--EEEecCC---------------CCCcEEEEE---------c--CCEEEEEeCCCcEEEEEcCCC
Q 014003 337 TIRVWDLD--TLEA--VMTLNGH---------------TDAPMSLLC---------W--DQYLLSCSLDNTIKVWIMTEE 386 (432)
Q Consensus 337 ~I~vwd~~--~~~~--~~~~~~~---------------~~~v~~~~~---------~--~~~l~s~s~dg~i~iwd~~~~ 386 (432)
.|+.+|.. +++. ...+.+. -.....+++ . ++++++-...+.|+.++. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 99998865 3321 1222211 112455666 4 345555556778888874 22
Q ss_pred CceeEEeeccC--------C------cceEEEeeeeC-CCCCcEEEEEeCCCeEEEeeCC
Q 014003 387 GNLEVAYTHNE--------D------HGVLALGGLND-PDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 387 ~~~~~~~~~~~--------~------~~~~~~~~~~s-p~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.+..+.+... . .-......+.+ ++|. ++++=...+.|+.++++
T Consensus 375 -~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~-lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 -RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC-FYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE-EEEEEGGGTEEEEEEEC
T ss_pred -CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE-EEEEeCCCCEEEEEecC
Confidence 3333332211 0 00012223336 5665 77766778889988765
No 311
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.31 E-value=0.78 Score=43.61 Aligned_cols=146 Identities=8% Similarity=-0.047 Sum_probs=84.1
Q ss_pred CCceEEee-ccCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeC-CC----cEEEEeCCCCc
Q 014003 152 PKNVCYHW-LSGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSR-DG----TVQLWDCHTGQ 225 (432)
Q Consensus 152 ~~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~-Dg----~v~iWd~~~~~ 225 (432)
+..+++.+ ....+...+..+.|+.+|.+.+ . +..+.........|+|++++++|+.+.. ++ .+...+. .+.
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-~-v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-Y-VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTT-E-EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCC-E-EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 34566665 3444444333378999998775 3 3333345567889999999996666654 22 2333343 332
Q ss_pred ee--EEEeCCCceee--EEE-CCCEEEEE-cCCeEEEEEccCCceEee--cCCcCCEEEEEEcCC--EE-EEEECCCcEE
Q 014003 226 SA--SVINLGAEVGS--LIC-EGPWVFVG-MPNVVKAWHIESSAEFSL--DGPVGEVYSMVVANE--ML-FAGAQDGNIL 294 (432)
Q Consensus 226 ~~--~~~~~~~~~~~--~~~-~~~~l~~~-~~~~i~vwd~~~~~~~~~--~~~~~~v~~l~~~~~--~l-~~g~~dg~i~ 294 (432)
.. ..+........ +.+ ++.++++. ..+.|..++...+....+ .........++++++ +| ++-...+.|.
T Consensus 216 ~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 216 FKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp SCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 22 22222222222 334 45555555 567899999887654222 222234678899887 34 4445678899
Q ss_pred EEECCC
Q 014003 295 VWKGIP 300 (432)
Q Consensus 295 ~wd~~~ 300 (432)
.++...
T Consensus 296 ~~~~d~ 301 (430)
T 3tc9_A 296 RSDYDW 301 (430)
T ss_dssp EEEEET
T ss_pred EEeCCc
Confidence 988654
No 312
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.27 E-value=1.1 Score=44.88 Aligned_cols=267 Identities=10% Similarity=0.034 Sum_probs=139.3
Q ss_pred ceEEeeccC-ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC
Q 014003 154 NVCYHWLSG-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (432)
Q Consensus 154 ~~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 232 (432)
.+.+.+... ..++-...+.|...+++.... .....+.-....+|++..+ ...++-...+.|...|..+++....+..
T Consensus 175 Glald~~~~~LY~aD~~~~~I~~~~~dG~~~-~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~ 252 (619)
T 3s94_A 175 GLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHS 252 (619)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEESSSCCEE-C---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCS
T ss_pred EEEEEccCCEEEEEeCCCCeEEEecCCCCcc-EEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEec
Confidence 445555444 334445566788888865422 2222212222346676544 4455555678888888877654333221
Q ss_pred CC--------------c--------------eeeEE-----------E---------------CCCEEEEEcCCeEEEEE
Q 014003 233 GA--------------E--------------VGSLI-----------C---------------EGPWVFVGMPNVVKAWH 258 (432)
Q Consensus 233 ~~--------------~--------------~~~~~-----------~---------------~~~~l~~~~~~~i~vwd 258 (432)
.. + ..|+. + ...+++.+..+.|+..+
T Consensus 253 ~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~ 332 (619)
T 3s94_A 253 DIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRIS 332 (619)
T ss_dssp CCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEE
T ss_pred CCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEe
Confidence 00 0 00110 0 11245555666777777
Q ss_pred ccCCce--Eee-cCCcCCEEEEEEcCC--EE-EEEECCCcEEEEECCCCCCCccccceeeeccccCeEEEEEe--CC-EE
Q 014003 259 IESSAE--FSL-DGPVGEVYSMVVANE--ML-FAGAQDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVG--GK-RL 329 (432)
Q Consensus 259 ~~~~~~--~~~-~~~~~~v~~l~~~~~--~l-~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~-~l 329 (432)
+..... ..+ ......+.++++++. .| ++-...+.|+.+++..... .......-.....++++ +. .+
T Consensus 333 l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-----~~v~~~~~~~p~GlAvD~~~~~lY 407 (619)
T 3s94_A 333 LDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-----QFVVTAQIAHPDGIAVDWVARNLY 407 (619)
T ss_dssp SSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEECSSCSCCCEEEEETTTTEEE
T ss_pred cCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc-----EEEEECCCCCcCceEEecccCcEE
Confidence 765532 111 122345778888863 44 4444578899998876432 11122222345577887 44 45
Q ss_pred EEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEc--CCEEEEEeC--CCcEEEEEcCCCCceeEEeeccCCcceEEEe
Q 014003 330 YSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCW--DQYLLSCSL--DNTIKVWIMTEEGNLEVAYTHNEDHGVLALG 405 (432)
Q Consensus 330 ~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 405 (432)
++-+..+.|.+.++........+...-.....++++ ..+|+.+.. ...|...+++...........-.....+++
T Consensus 408 ~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~Glal- 486 (619)
T 3s94_A 408 WTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLAL- 486 (619)
T ss_dssp EEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEE-
T ss_pred EEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEE-
Confidence 555567899999987544322233333456777777 245544432 356666666544332222222233445566
Q ss_pred eeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 406 GLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 406 ~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+++++.+.++=+..+.|..+++.
T Consensus 487 ---D~~~~~LY~aD~~~~~I~~~~~d 509 (619)
T 3s94_A 487 ---DYDEGKIYWGDAKTDKIEVMNTD 509 (619)
T ss_dssp ---ETTTTEEEEEETTTTEEEEEESS
T ss_pred ---cccCCEEEEEECCCCEEEEEecC
Confidence 66655455555566777777653
No 313
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.26 E-value=0.39 Score=44.20 Aligned_cols=228 Identities=8% Similarity=0.031 Sum_probs=113.0
Q ss_pred ceeeCCC-CCeEEEEeCCC---CcEEEEEEe-cccCcEEEEEecCCCCEEEEEeC-C---------CcEEEEeCCCCcee
Q 014003 163 NCVKGDE-CRFWHSWFCGE---GFTMLAKLE-GHKKAVSGIALPLRSDKLYSGSR-D---------GTVQLWDCHTGQSA 227 (432)
Q Consensus 163 ~~~~g~~-d~~i~vw~~~~---~~~~~~~l~-~H~~~V~~l~~~~~~~~l~s~s~-D---------g~v~iWd~~~~~~~ 227 (432)
..+.|+. ...+.+||..+ ....+..+. .....-.++.+ +++.++.|+. + ..+.+||+.+.+-.
T Consensus 22 iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~ 99 (357)
T 2uvk_A 22 VYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV 99 (357)
T ss_dssp EEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEE
T ss_pred EEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEE
Confidence 4444442 34688888863 333333332 11111122222 5666666665 2 46889999876533
Q ss_pred EEEeCC-Cc---eeeEEECCCEEEEEc-C---------------------------------------CeEEEEEccCCc
Q 014003 228 SVINLG-AE---VGSLICEGPWVFVGM-P---------------------------------------NVVKAWHIESSA 263 (432)
Q Consensus 228 ~~~~~~-~~---~~~~~~~~~~l~~~~-~---------------------------------------~~i~vwd~~~~~ 263 (432)
...... .. ...+..++.+++.|. + +.+.+||+.+.+
T Consensus 100 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 179 (357)
T 2uvk_A 100 KLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQ 179 (357)
T ss_dssp ECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTE
T ss_pred ECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCc
Confidence 322222 11 123335666666553 2 578899998775
Q ss_pred eEeec--CCcCCE-EEEEEcCC-EEEEEEC------CCcEEEEECCCCCCCccccceeeeccc--cCeEEEEEeCCEEEE
Q 014003 264 EFSLD--GPVGEV-YSMVVANE-MLFAGAQ------DGNILVWKGIPNTQNPFQLAALLKGHT--RPVTCLAVGGKRLYS 331 (432)
Q Consensus 264 ~~~~~--~~~~~v-~~l~~~~~-~l~~g~~------dg~i~~wd~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~l~s 331 (432)
=.... .....- .+++...+ +++.|+. ...+..||+...... +..+..+.... ....++..++.+++.
T Consensus 180 W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~iyv~ 258 (357)
T 2uvk_A 180 WSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLK-WNKLAPVSSPDGVAGGFAGISNDSLIFA 258 (357)
T ss_dssp EEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CE-EEECCCSSTTTCCBSCEEEEETTEEEEE
T ss_pred EEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCc-EEecCCCCCCcccccceEEEECCEEEEE
Confidence 22211 111111 33444455 5555553 345777887322111 33332222111 122344556777777
Q ss_pred EeCC----------------------CeEEEEECCCCc--eEEEecCCCCCcEEEEEcCCEEEEEeCCC------cEEEE
Q 014003 332 GSMD----------------------NTIRVWDLDTLE--AVMTLNGHTDAPMSLLCWDQYLLSCSLDN------TIKVW 381 (432)
Q Consensus 332 gs~d----------------------g~I~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~s~dg------~i~iw 381 (432)
|+.+ ..+.+||+++.+ .+..+........++...+..++.|+.++ .|.++
T Consensus 259 GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l 338 (357)
T 2uvk_A 259 GGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLI 338 (357)
T ss_dssp CCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEE
T ss_pred cCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEE
Confidence 7632 257899987643 44444433333445555678888888653 35566
Q ss_pred EcCCCCceeEEe
Q 014003 382 IMTEEGNLEVAY 393 (432)
Q Consensus 382 d~~~~~~~~~~~ 393 (432)
++++.+.+....
T Consensus 339 ~~~~~~~~~~~~ 350 (357)
T 2uvk_A 339 TVKDNKVTVQNL 350 (357)
T ss_dssp EC-CCSCEEEC-
T ss_pred EEcCcEeEeeec
Confidence 887776655443
No 314
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.10 E-value=0.78 Score=41.64 Aligned_cols=197 Identities=11% Similarity=0.055 Sum_probs=111.4
Q ss_pred EecccCcEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCceeEEEeCCC---------ceeeEEE-----CCCEEEEEc--
Q 014003 188 LEGHKKAVSGIALPLRSDKLYSGS-RDGTVQLWDCHTGQSASVINLGA---------EVGSLIC-----EGPWVFVGM-- 250 (432)
Q Consensus 188 l~~H~~~V~~l~~~~~~~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~---------~~~~~~~-----~~~~l~~~~-- 250 (432)
+....---.+++|++....|+.++ ..++|..||...+..... .... ....+.. ++.++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 334444456788977655666555 789999999986655444 3221 1234444 444555433
Q ss_pred ------------CCeEEEEEcc---CCceEeecC--------------CcCCEEEEEEcCC--EEEEEECC-CcEEEEEC
Q 014003 251 ------------PNVVKAWHIE---SSAEFSLDG--------------PVGEVYSMVVANE--MLFAGAQD-GNILVWKG 298 (432)
Q Consensus 251 ------------~~~i~vwd~~---~~~~~~~~~--------------~~~~v~~l~~~~~--~l~~g~~d-g~i~~wd~ 298 (432)
+..+..+|+. +++...... .......++.+++ ..++++.. +.|...+.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 5779999999 665432111 2234778888877 66667777 88777776
Q ss_pred CCCCCCccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCce--EEEe-cCCC---CCcEE---EEEcCC
Q 014003 299 IPNTQNPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA--VMTL-NGHT---DAPMS---LLCWDQ 367 (432)
Q Consensus 299 ~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~--~~~~-~~~~---~~v~~---~~~~~~ 367 (432)
.......+.............+.|+++ ++.|++....|.|..+|+++... +..- .+.. ..... ....++
T Consensus 167 dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 167 DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCE
Confidence 543210000000001111224577886 88888887799999999885433 2111 0211 11222 233466
Q ss_pred E-EEEEeCCCcEEEEEcCC
Q 014003 368 Y-LLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 368 ~-l~s~s~dg~i~iwd~~~ 385 (432)
. +++.+..+.+.+.+.+.
T Consensus 247 vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 247 SVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEEETTEEEEEECSST
T ss_pred EEEEEcCCCCEEEEECCCC
Confidence 6 55555666666666544
No 315
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.97 E-value=2.3 Score=45.90 Aligned_cols=209 Identities=10% Similarity=0.051 Sum_probs=126.3
Q ss_pred CeEEEEeCCCCcEEEEEEe-cccCcEEEEE---ecC-CCCEEEEEe----------CCCcEEEEeCCCCc--eeEEEeCC
Q 014003 171 RFWHSWFCGEGFTMLAKLE-GHKKAVSGIA---LPL-RSDKLYSGS----------RDGTVQLWDCHTGQ--SASVINLG 233 (432)
Q Consensus 171 ~~i~vw~~~~~~~~~~~l~-~H~~~V~~l~---~~~-~~~~l~s~s----------~Dg~v~iWd~~~~~--~~~~~~~~ 233 (432)
+.|++.|..+. +.+..++ .....+.+++ |.. ...+|+.|. ..|.|.++++..++ .+...+..
T Consensus 807 s~i~lidp~t~-~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~ 885 (1158)
T 3ei3_A 807 HNLLIIDQHTF-EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVK 885 (1158)
T ss_dssp EEEEEEETTTC-CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEeCCCC-eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcC
Confidence 45788887654 3344333 2234455555 332 247888876 34789999987443 33334456
Q ss_pred CceeeEEECCCEEEEEcCCeEEEEEccCCceEeecC--Cc-CCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccce
Q 014003 234 AEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDG--PV-GEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAA 310 (432)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~--~~-~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~ 310 (432)
+.+.++..-+..++++..+.+++|++...+.+.... .. -.+..+....+++++|..-..|.++..+..... +..+.
T Consensus 886 g~v~al~~~~g~Lla~ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~-L~~~a 964 (1158)
T 3ei3_A 886 GAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN-FEEIA 964 (1158)
T ss_dssp SCEEEEEEETTEEEEEETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTE-EEEEE
T ss_pred CcCEEEeeeCCEEEEEcCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCe-EEEEE
Confidence 778888765557888888999999998776443211 11 123466667789999998888888765443221 11111
Q ss_pred eeeccccCeEEEEE-eCCEEEEEeCCCeEEEEECCCC--------ceEEEecCCCC-CcEEEEE---c-----------C
Q 014003 311 LLKGHTRPVTCLAV-GGKRLYSGSMDNTIRVWDLDTL--------EAVMTLNGHTD-APMSLLC---W-----------D 366 (432)
Q Consensus 311 ~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~vwd~~~~--------~~~~~~~~~~~-~v~~~~~---~-----------~ 366 (432)
-..+...++++.+ +...++.+..+|.|.+...... +....-.-|-+ .++++.. . .
T Consensus 965 -~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~ 1043 (1158)
T 3ei3_A 965 -RDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQ 1043 (1158)
T ss_dssp -ECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEE
T ss_pred -eecccccEEEEEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCcccccccc
Confidence 1234557788777 5778899999999999976541 22222222322 3444432 1 1
Q ss_pred CEEEEEeCCCcEEEEE
Q 014003 367 QYLLSCSLDNTIKVWI 382 (432)
Q Consensus 367 ~~l~s~s~dg~i~iwd 382 (432)
..++-++.+|.|-+.-
T Consensus 1044 ~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 1044 GSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp EEEEEEETTSCEEEEE
T ss_pred ceEEEEecCCEEEEEE
Confidence 3477777888887763
No 316
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.1 Score=47.94 Aligned_cols=179 Identities=8% Similarity=-0.021 Sum_probs=99.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeEEEeCC--CceeeEE-E----CCCEEEE--EcCCeEEEEEccCCceEeecC-----
Q 014003 204 SDKLYSGSRDGTVQLWDCHTGQSASVINLG--AEVGSLI-C----EGPWVFV--GMPNVVKAWHIESSAEFSLDG----- 269 (432)
Q Consensus 204 ~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~--~~~~~~~-~----~~~~l~~--~~~~~i~vwd~~~~~~~~~~~----- 269 (432)
+..++.++.||.|.-.|.++|+..-.++.. .+..... . ++..+++ ..||.+..++.+++.......
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 347889999999999999999999998865 2222211 1 2234444 379999999988775331110
Q ss_pred CcCCEEE---EEE-------cCCEEEEEECCCcEEEEECCCCCCCccccceeeeccc--c-----CeEEEE-------Ee
Q 014003 270 PVGEVYS---MVV-------ANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLKGHT--R-----PVTCLA-------VG 325 (432)
Q Consensus 270 ~~~~v~~---l~~-------~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h~--~-----~v~~l~-------~~ 325 (432)
...++.. ..+ ..+.+++|+.+|.+...|+.+++. +..+.... . ...|.. ..
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~-----~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~ 164 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI-----ISAFGPGSKNGYFGSQSVDCSPEEKIKLQEC 164 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE-----EEEESTTCBCC--------------------
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE-----EEEEecCCCcccccccccccccccccccccC
Confidence 1111221 011 334889999999999999999863 33332111 0 011111 12
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEe-----cCCCCC--c---EEEEEcCCEEEEEeCCCcEEEEEcCCCCcee
Q 014003 326 GKRLYSGSMDNTIRVWDLDTLEAVMTL-----NGHTDA--P---MSLLCWDQYLLSCSLDNTIKVWIMTEEGNLE 390 (432)
Q Consensus 326 ~~~l~sgs~dg~I~vwd~~~~~~~~~~-----~~~~~~--v---~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 390 (432)
+..++.+..+..+.+.+ ++|+ +..+ ...... + .....++.+ +.++.||.|..+|..++..+.
T Consensus 165 ~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 165 ENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 56777777777777766 4554 2221 111110 0 000001233 446777777777776665443
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.62 E-value=0.54 Score=42.39 Aligned_cols=132 Identities=11% Similarity=0.054 Sum_probs=66.2
Q ss_pred EEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCC--------CeEEEEECCCCceE--EEecCCCCCcEEE
Q 014003 293 ILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD--------NTIRVWDLDTLEAV--MTLNGHTDAPMSL 362 (432)
Q Consensus 293 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~d--------g~I~vwd~~~~~~~--~~~~~~~~~v~~~ 362 (432)
+..||..+.+ +..+..+...........+++..++.|+.+ ..+.+||..+.+-. ..+.........+
T Consensus 69 ~~~~d~~~~~---W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 145 (315)
T 4asc_A 69 FLQFDHLDSE---WLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL 145 (315)
T ss_dssp EEEEETTTTE---EEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred eEEecCCCCe---EEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE
Confidence 7788877654 222222222222223334456666777632 46899999876422 2222222223344
Q ss_pred EEcCCEEEEEeC-C-----CcEEEEEcCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCC-----eEEEeeCC
Q 014003 363 LCWDQYLLSCSL-D-----NTIKVWIMTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDD-----SVHLYELP 431 (432)
Q Consensus 363 ~~~~~~l~s~s~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg-----~I~iwdl~ 431 (432)
...+..++.|+. + ..+.+||..+.+-.. +.....+....+.. .-+++ +++.|+.++ .+.+||+.
T Consensus 146 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~---~~~~~-iyv~GG~~~~~~~~~~~~yd~~ 220 (315)
T 4asc_A 146 SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE-LAPMQTARSLFGAT---VHDGR-IIVAAGVTDTGLTSSAEVYSIT 220 (315)
T ss_dssp EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEE---EETTE-EEEEEEECSSSEEEEEEEEETT
T ss_pred EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEE-CCCCCCchhceEEE---EECCE-EEEEeccCCCCccceEEEEECC
Confidence 445677777776 2 468889987653211 11111111111111 12556 677776544 47788875
Q ss_pred C
Q 014003 432 S 432 (432)
Q Consensus 432 s 432 (432)
+
T Consensus 221 ~ 221 (315)
T 4asc_A 221 D 221 (315)
T ss_dssp T
T ss_pred C
Confidence 3
No 318
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=95.53 E-value=1.7 Score=41.25 Aligned_cols=192 Identities=7% Similarity=0.001 Sum_probs=100.2
Q ss_pred CceEEeec--cCceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCC---Cc-EEEEeCCCCce
Q 014003 153 KNVCYHWL--SGNCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRD---GT-VQLWDCHTGQS 226 (432)
Q Consensus 153 ~~~~~~~~--~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~D---g~-v~iWd~~~~~~ 226 (432)
..+++.+. .+.+..++..+.|+.++..++ . +..+.........|+++++|+++++.... .. +...+...+..
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g-~-v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~ 219 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ-Y-VDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT 219 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEETTTT-E-EEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEECCCC-E-EEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence 34555552 344444443388999998766 3 33444455678999999999955544321 12 33333322211
Q ss_pred -eEEEeCCCcee--eEEE-CCCEEEEE-cCCeEEEEEccCCce-Ee--ecCCcCCEEEEEEcCC--EEEE-EECCCcEEE
Q 014003 227 -ASVINLGAEVG--SLIC-EGPWVFVG-MPNVVKAWHIESSAE-FS--LDGPVGEVYSMVVANE--MLFA-GAQDGNILV 295 (432)
Q Consensus 227 -~~~~~~~~~~~--~~~~-~~~~l~~~-~~~~i~vwd~~~~~~-~~--~~~~~~~v~~l~~~~~--~l~~-g~~dg~i~~ 295 (432)
...+....... .+.+ ++.+.++. .++.|+.++..++.. .. ..+....-..++++++ .|+. -...+.|+.
T Consensus 220 ~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~ 299 (433)
T 4hw6_A 220 ERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYR 299 (433)
T ss_dssp CEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred ccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEE
Confidence 11121111122 2223 45555554 567899999886654 21 1222223346888887 3444 455678999
Q ss_pred EECCCCCCCccccceeeecc---------------ccCeEEEEE---------e--CCEEEEEeCCCeEEEEECCCCce
Q 014003 296 WKGIPNTQNPFQLAALLKGH---------------TRPVTCLAV---------G--GKRLYSGSMDNTIRVWDLDTLEA 348 (432)
Q Consensus 296 wd~~~~~~~~~~~~~~~~~h---------------~~~v~~l~~---------~--~~~l~sgs~dg~I~vwd~~~~~~ 348 (432)
++....... +.....+.+. -.....+++ + ++++++-..++.|+.++. ++..
T Consensus 300 ~~~d~~~~~-~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v 376 (433)
T 4hw6_A 300 VDYNRETGK-LAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV 376 (433)
T ss_dssp EEBCTTTCC-BCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE
T ss_pred EeCCCCCcc-cCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE
Confidence 886532110 0001111111 122456787 5 445555556789999985 5543
No 319
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.13 Score=47.22 Aligned_cols=185 Identities=15% Similarity=0.117 Sum_probs=105.6
Q ss_pred cCceeeCCCCCeEEEEeCCCCcEEEEEEecc-cCcEEEEEec--CCCCEEEEE--eCCCcEEEEeCCCCceeEEEeCCCc
Q 014003 161 SGNCVKGDECRFWHSWFCGEGFTMLAKLEGH-KKAVSGIALP--LRSDKLYSG--SRDGTVQLWDCHTGQSASVINLGAE 235 (432)
Q Consensus 161 ~~~~~~g~~d~~i~vw~~~~~~~~~~~l~~H-~~~V~~l~~~--~~~~~l~s~--s~Dg~v~iWd~~~~~~~~~~~~~~~ 235 (432)
.+.++.++.||.|+-.|.+++ +.+.+++.. ..++....-. +.+..++.+ +.||.|..+|.++|.....+.....
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG-~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNG-HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTT-EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCC-cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 446788899999999999988 777777654 1233322111 112234444 6899999999998866555543221
Q ss_pred ee--eEE--------------ECCCEEEEEcCCeEEEEEccCCceEeecCCcCC--------EEEEE-------EcCCEE
Q 014003 236 VG--SLI--------------CEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGE--------VYSMV-------VANEML 284 (432)
Q Consensus 236 ~~--~~~--------------~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~--------v~~l~-------~~~~~l 284 (432)
+. .+. .++.+++++.++.+...|+++++.+.......+ ..|.. ...+.+
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 11 011 345556677899999999999997644332211 11111 122467
Q ss_pred EEEECCCcEEEEECCCCCCCccccc-eeeeccccC--e---EEEEEeCCEEEEEeCCCeEEEEECCCCceEE
Q 014003 285 FAGAQDGNILVWKGIPNTQNPFQLA-ALLKGHTRP--V---TCLAVGGKRLYSGSMDNTIRVWDLDTLEAVM 350 (432)
Q Consensus 285 ~~g~~dg~i~~wd~~~~~~~~~~~~-~~~~~h~~~--v---~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~ 350 (432)
+.+..+..+.+.+ +++. .+... ......... + ..+..++.+ +.++.||.|.-+|.++|+.+.
T Consensus 169 ~ig~~~y~v~~~~-~sG~--~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGA--SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEECEECC-TTSC--CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EEecceEEEEEEC-CCCC--eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 7777777777766 3332 12111 111111000 0 000012444 568999999999999999876
No 320
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.73 E-value=2.2 Score=38.29 Aligned_cols=92 Identities=8% Similarity=-0.048 Sum_probs=49.2
Q ss_pred EEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCC-------CeEEEEECCCCceEEE--ecCCCCCcEEEE
Q 014003 293 ILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD-------NTIRVWDLDTLEAVMT--LNGHTDAPMSLL 363 (432)
Q Consensus 293 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~d-------g~I~vwd~~~~~~~~~--~~~~~~~v~~~~ 363 (432)
+..||..+.+ +..+..+............++..++.|+.+ ..+.+||..+.+-... +.........+.
T Consensus 80 ~~~~d~~~~~---W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 156 (318)
T 2woz_A 80 FFQLDNVSSE---WVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS 156 (318)
T ss_dssp EEEEETTTTE---EEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE
T ss_pred EEEEeCCCCc---EEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE
Confidence 7778877654 332322222222233344567777777754 3588899887543221 221111223333
Q ss_pred EcCCEEEEEeC------CCcEEEEEcCCCC
Q 014003 364 CWDQYLLSCSL------DNTIKVWIMTEEG 387 (432)
Q Consensus 364 ~~~~~l~s~s~------dg~i~iwd~~~~~ 387 (432)
..+.+++.|+. -..+.+||+.+.+
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 44666666664 2358899987754
No 321
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=94.13 E-value=4.4 Score=39.09 Aligned_cols=233 Identities=12% Similarity=0.110 Sum_probs=122.1
Q ss_pred cEEEEEecC-CCCEEEEE-eCCCcEEEEeCCCCceeEEEeCCC----ceeeE---------EECCCEEEEE-cCC-----
Q 014003 194 AVSGIALPL-RSDKLYSG-SRDGTVQLWDCHTGQSASVINLGA----EVGSL---------ICEGPWVFVG-MPN----- 252 (432)
Q Consensus 194 ~V~~l~~~~-~~~~l~s~-s~Dg~v~iWd~~~~~~~~~~~~~~----~~~~~---------~~~~~~l~~~-~~~----- 252 (432)
....|+|+| +...|+.+ ...+.|++.|++++.......... ....+ ..++..+++. ..+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 466899998 34444444 445779999999887776665432 23333 3467755544 322
Q ss_pred --eEEEEEccC-Cce------EeecCCcCCEEEEEEcCC---EEEEEECCCcEEEEECC-------CCCC-Cc-------
Q 014003 253 --VVKAWHIES-SAE------FSLDGPVGEVYSMVVANE---MLFAGAQDGNILVWKGI-------PNTQ-NP------- 305 (432)
Q Consensus 253 --~i~vwd~~~-~~~------~~~~~~~~~v~~l~~~~~---~l~~g~~dg~i~~wd~~-------~~~~-~~------- 305 (432)
.+.+++... +.. .... .......++++++ ++++-..++.|..+|+. ++.. .+
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 255565333 111 1111 1123346677773 55566677889999987 4432 00
Q ss_pred -cccceeeeccccCeEEEEEe--CCEEEEE-eCCCeEEEEEC--CCCce--EEEecCC---CC------------CcE-E
Q 014003 306 -FQLAALLKGHTRPVTCLAVG--GKRLYSG-SMDNTIRVWDL--DTLEA--VMTLNGH---TD------------APM-S 361 (432)
Q Consensus 306 -~~~~~~~~~h~~~v~~l~~~--~~~l~sg-s~dg~I~vwd~--~~~~~--~~~~~~~---~~------------~v~-~ 361 (432)
.+.+... +....-..|+++ +++|+.+ +....|+.+|. .++.. ...+.+. .+ ... .
T Consensus 299 ~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 299 TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred ccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 0011111 122345678887 7755554 56788999664 33322 1222221 11 122 2
Q ss_pred EEEc---------CCEEEEEeCCCcEEEEEcCCCCceeEEeeccC--------------C------cceEEEeeeeCCC-
Q 014003 362 LLCW---------DQYLLSCSLDNTIKVWIMTEEGNLEVAYTHNE--------------D------HGVLALGGLNDPD- 411 (432)
Q Consensus 362 ~~~~---------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--------------~------~~~~~~~~~~sp~- 411 (432)
+... ++++++=.....|+.++. ++ .+..+.+... . .-......+.+++
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEeC-CC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence 3332 345555566778888873 33 4444443210 0 0001122333676
Q ss_pred CCcEEEEEeCCCeEEEeeCC
Q 014003 412 GNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 412 g~~~l~sg~~Dg~I~iwdl~ 431 (432)
|. ++++=.....||.++++
T Consensus 456 g~-lyVaD~~N~rIrki~~~ 474 (496)
T 3kya_A 456 EM-FYVHDQVGHTIRTISME 474 (496)
T ss_dssp TE-EEEEETTTTEEEEEEEC
T ss_pred CE-EEEEeCCCCEEEEEECC
Confidence 66 67767778899988865
No 322
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=93.87 E-value=5.9 Score=39.62 Aligned_cols=268 Identities=10% Similarity=0.057 Sum_probs=139.9
Q ss_pred ceEEeeccC-ceeeCCCCCeEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC
Q 014003 154 NVCYHWLSG-NCVKGDECRFWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (432)
Q Consensus 154 ~~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 232 (432)
.+++.+... ..++-...+.|...+++..... .+...-....+|++.. +..++|-...+.|...|..+++....+..
T Consensus 170 GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~--v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~ 246 (628)
T 4a0p_A 170 GLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE--VIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQG 246 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred eEEEccccCEEEEEECCCCEEEEEcCCCCceE--EeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEec
Confidence 455555444 3444456678888888654332 2333344556788764 45555555678888888777654443321
Q ss_pred CCc---------------------------eeeEEE------------------------CCCEEEEEcCCeEEEEEccC
Q 014003 233 GAE---------------------------VGSLIC------------------------EGPWVFVGMPNVVKAWHIES 261 (432)
Q Consensus 233 ~~~---------------------------~~~~~~------------------------~~~~l~~~~~~~i~vwd~~~ 261 (432)
... -.|+.. ...++..+....|+-..+..
T Consensus 247 ~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~ 326 (628)
T 4a0p_A 247 HLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDE 326 (628)
T ss_dssp SCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCT
T ss_pred CCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEeccc
Confidence 100 001110 11233444444555444433
Q ss_pred Cc---eEeecCCcCCEEEEEEcCC--E-EEEEECCCcEEEEECCCCCCCcccccee-ee--ccccCeEEEEEe--CC-EE
Q 014003 262 SA---EFSLDGPVGEVYSMVVANE--M-LFAGAQDGNILVWKGIPNTQNPFQLAAL-LK--GHTRPVTCLAVG--GK-RL 329 (432)
Q Consensus 262 ~~---~~~~~~~~~~v~~l~~~~~--~-l~~g~~dg~i~~wd~~~~~~~~~~~~~~-~~--~h~~~v~~l~~~--~~-~l 329 (432)
.. ..........+.++++++. . +++=...+.|+.++...... ...+.. .. ........|+++ ++ +.
T Consensus 327 ~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~--~~v~~~~~~~~~~~~~p~glAvD~~~~nLY 404 (628)
T 4a0p_A 327 QQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG--FTVVVSSVPSQNLEIQPYDLSIDIYSRYIY 404 (628)
T ss_dssp TCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEC--------CCCEEEEEEETTTTEEE
T ss_pred ccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc--eEEEEcccccccccCCcceEEeeccCCeEE
Confidence 21 1111122345778888864 4 44444567788887764321 011111 00 123356788887 45 45
Q ss_pred EEEeCCCeEEEEECCCCceEEEe-cCCCCCcEEEEEc--CCEE-EEEeCCC--cEEEEEcCCCCceeEEeeccCCcceEE
Q 014003 330 YSGSMDNTIRVWDLDTLEAVMTL-NGHTDAPMSLLCW--DQYL-LSCSLDN--TIKVWIMTEEGNLEVAYTHNEDHGVLA 403 (432)
Q Consensus 330 ~sgs~dg~I~vwd~~~~~~~~~~-~~~~~~v~~~~~~--~~~l-~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 403 (432)
++-+..+.|.+.++. |+....+ .........++.+ ..+| ++-.... .|...+++...........-.....++
T Consensus 405 ~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla 483 (628)
T 4a0p_A 405 WTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALA 483 (628)
T ss_dssp EEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred EEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEE
Confidence 566678899999986 5554444 3334557788877 2344 4433222 466666654333222222223345566
Q ss_pred EeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 404 LGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 404 ~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
+ +++++.+..+-+..+.|...++.
T Consensus 484 ~----D~~~~~LYw~D~~~~~I~~~~~d 507 (628)
T 4a0p_A 484 L----DSRLGKLFWADSDLRRIESSDLS 507 (628)
T ss_dssp E----ETTTTEEEEEETTTTEEEEEETT
T ss_pred E----eCCCCEEEEEeCCCCEEEEEeCC
Confidence 6 67666455555566778777763
No 323
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.82 E-value=3.8 Score=37.32 Aligned_cols=136 Identities=11% Similarity=-0.026 Sum_probs=70.1
Q ss_pred CcEEEEeCCCCceeEEEeCCC--c--eeeEEECCCEEEEEc-------CCeEEEEEc--cCCceEeecC---CcCC-EEE
Q 014003 214 GTVQLWDCHTGQSASVINLGA--E--VGSLICEGPWVFVGM-------PNVVKAWHI--ESSAEFSLDG---PVGE-VYS 276 (432)
Q Consensus 214 g~v~iWd~~~~~~~~~~~~~~--~--~~~~~~~~~~l~~~~-------~~~i~vwd~--~~~~~~~~~~---~~~~-v~~ 276 (432)
..+.+||..+.+-...-.... . ...+..++.+++.|. ...+..+|+ ++..=..... .... -.+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~ 247 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF 247 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence 478899998876444433321 1 223334666555542 346777876 3333111111 1111 112
Q ss_pred EEEcCC-EEEEEECC----------------------CcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEe
Q 014003 277 MVVANE-MLFAGAQD----------------------GNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGS 333 (432)
Q Consensus 277 l~~~~~-~l~~g~~d----------------------g~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs 333 (432)
+....+ +++.|+.+ ..+.+||+.+.+ +..+..+......-.++.++++.++.|+
T Consensus 248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~r~~~~~~~~~~~i~v~GG 324 (357)
T 2uvk_A 248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK---WDKSGELSQGRAYGVSLPWNNSLLIIGG 324 (357)
T ss_dssp EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC------CEEEEECSSCCBSSEEEEETTEEEEEEE
T ss_pred EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc---eeeCCCCCCCcccceeEEeCCEEEEEee
Confidence 333344 66666532 257889988764 4444444433333445566788888888
Q ss_pred CCC------eEEEEECCCCceEEEe
Q 014003 334 MDN------TIRVWDLDTLEAVMTL 352 (432)
Q Consensus 334 ~dg------~I~vwd~~~~~~~~~~ 352 (432)
.++ .|.++++++++.+...
T Consensus 325 ~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 325 ETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp ECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eCCCCCEeeeEEEEEEcCcEeEeee
Confidence 653 4666788887775543
No 324
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=93.75 E-value=4.1 Score=37.44 Aligned_cols=149 Identities=12% Similarity=0.165 Sum_probs=78.8
Q ss_pred EEEEEEcCC-EEEEEE-------------CCCcEEEEECCCCCCCccccceeeec-----cccCeEEEEE----eCC-EE
Q 014003 274 VYSMVVANE-MLFAGA-------------QDGNILVWKGIPNTQNPFQLAALLKG-----HTRPVTCLAV----GGK-RL 329 (432)
Q Consensus 274 v~~l~~~~~-~l~~g~-------------~dg~i~~wd~~~~~~~~~~~~~~~~~-----h~~~v~~l~~----~~~-~l 329 (432)
...+.+.++ .+++++ .+|.|.++|..+..... +.+. +.+ .......|.+ ++. +|
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~-~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELE-IIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECE-EECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEE-ccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 345555666 555554 79999999987543221 1111 111 1223445554 233 34
Q ss_pred EEE-eC--CCeEEEEECCCC----ceEEEecCCC-CCcEEEEEc--CCEEEEEeC-----------------CCcEEEEE
Q 014003 330 YSG-SM--DNTIRVWDLDTL----EAVMTLNGHT-DAPMSLLCW--DQYLLSCSL-----------------DNTIKVWI 382 (432)
Q Consensus 330 ~sg-s~--dg~I~vwd~~~~----~~~~~~~~~~-~~v~~~~~~--~~~l~s~s~-----------------dg~i~iwd 382 (432)
+++ .. +.+|.+|+++.. ..+.++.+.. .....+.+. |.+.++... .|.|.-+|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 443 33 467778776543 2234444332 234566655 555555431 23444444
Q ss_pred cCCCCceeEEeeccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 383 MTEEGNLEVAYTHNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
. + .+......-...+.+++ +||++.++++-+..+.|..|++.
T Consensus 210 ~--~-~~~~~~~~l~~pNGia~----spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 210 P--N-DVRVVAEGFDFANGINI----SPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp T--T-CCEEEEEEESSEEEEEE----CTTSSEEEEEEGGGTEEEEEEEC
T ss_pred C--C-eEEEeecCCcccCcceE----CCCCCEEEEEeCCCCeEEEEEEC
Confidence 3 3 23333333333455566 89999677777788999999874
No 325
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=93.49 E-value=4.3 Score=36.81 Aligned_cols=184 Identities=9% Similarity=0.053 Sum_probs=104.2
Q ss_pred ceeeCCCCCeEEEEeCCCCcEEEEEEec----cc--CcEEEEEe---cCCCCEEEEEe-------------CCCcEEEEe
Q 014003 163 NCVKGDECRFWHSWFCGEGFTMLAKLEG----HK--KAVSGIAL---PLRSDKLYSGS-------------RDGTVQLWD 220 (432)
Q Consensus 163 ~~~~g~~d~~i~vw~~~~~~~~~~~l~~----H~--~~V~~l~~---~~~~~~l~s~s-------------~Dg~v~iWd 220 (432)
..++.-..+.|..|+...+......+.+ .+ ..+..|.| .|+++++++.. .+..|..+|
T Consensus 27 ~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~D 106 (334)
T 2p9w_A 27 FYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFN 106 (334)
T ss_dssp EEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEE
T ss_pred EEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEc
Confidence 3444447899999999754222223332 11 14689999 68877777543 267799999
Q ss_pred CC---CCceeEEEeCCC--------------ceeeEE--ECCCEEE-EEcC-CeEEEEEccCCceEee--cC----CcCC
Q 014003 221 CH---TGQSASVINLGA--------------EVGSLI--CEGPWVF-VGMP-NVVKAWHIESSAEFSL--DG----PVGE 273 (432)
Q Consensus 221 ~~---~~~~~~~~~~~~--------------~~~~~~--~~~~~l~-~~~~-~~i~vwd~~~~~~~~~--~~----~~~~ 273 (432)
+. +++.+....... ....+. .+++..+ .+.. +.|...+........+ .. ...-
T Consensus 107 l~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G 186 (334)
T 2p9w_A 107 LPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPG 186 (334)
T ss_dssp SSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCS
T ss_pred CCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccC
Confidence 99 888877776431 122333 3555544 4455 6666666655433221 11 1122
Q ss_pred EEEEEEcCC--EEEEEECCCcEEEEECCCCCCCccccceeeec------cccCeEEEEEeCCE-EEEEeCCCeEEEEECC
Q 014003 274 VYSMVVANE--MLFAGAQDGNILVWKGIPNTQNPFQLAALLKG------HTRPVTCLAVGGKR-LYSGSMDNTIRVWDLD 344 (432)
Q Consensus 274 v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~------h~~~v~~l~~~~~~-l~sgs~dg~I~vwd~~ 344 (432)
.+.+++.|+ .|++....|.|..+|+..... .+......+ ....+.....+|+. +++....+.+.+.+.+
T Consensus 187 ~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~--~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 187 YSGITFDPHSNKLIAFGGPRALTAFDVSKPYA--WPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWD 264 (334)
T ss_dssp CSEEEEETTTTEEEEESSSSSEEEEECSSSSC--CCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSS
T ss_pred cceEEEeCCCCEEEEEcCCCeEEEEcCCCCcc--eeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCC
Confidence 568888877 666665699999999884211 001111001 11222222345777 5555567777777765
Q ss_pred CCce
Q 014003 345 TLEA 348 (432)
Q Consensus 345 ~~~~ 348 (432)
..+.
T Consensus 265 gW~s 268 (334)
T 2p9w_A 265 NWKS 268 (334)
T ss_dssp TTSE
T ss_pred Ccce
Confidence 5444
No 326
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.33 E-value=5.4 Score=37.52 Aligned_cols=139 Identities=14% Similarity=0.209 Sum_probs=89.0
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCC-----ceee--EEECCCEEEEEcCCeEEEEEccCCce----------
Q 014003 202 LRSDKLYSGSRDGTVQLWDCHTGQSASVINLGA-----EVGS--LICEGPWVFVGMPNVVKAWHIESSAE---------- 264 (432)
Q Consensus 202 ~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~-----~~~~--~~~~~~~l~~~~~~~i~vwd~~~~~~---------- 264 (432)
.+|..++.+- ++.||.-++..+..-+.+.... .+.. +.++|.+++..++..|.+..+..+..
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence 4555555554 3677777777555555555542 2333 33689999999999999998873321
Q ss_pred -----Eeec----CCcCCEEEEEEcCC-----EEEEEECCCcEEEEECCCCCCCccccc---e--eeeccccCeEEEEEe
Q 014003 265 -----FSLD----GPVGEVYSMVVANE-----MLFAGAQDGNILVWKGIPNTQNPFQLA---A--LLKGHTRPVTCLAVG 325 (432)
Q Consensus 265 -----~~~~----~~~~~v~~l~~~~~-----~l~~g~~dg~i~~wd~~~~~~~~~~~~---~--~~~~h~~~v~~l~~~ 325 (432)
+... ....+|..+.|+|- .|++-..|+.|++||+......+..+. . ........|.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 1111 13567999999986 899999999999999987443222000 0 112233678899997
Q ss_pred --CCEEEEEe--CCCeEEEE
Q 014003 326 --GKRLYSGS--MDNTIRVW 341 (432)
Q Consensus 326 --~~~l~sgs--~dg~I~vw 341 (432)
+-.|+..+ ..|.|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 44455544 77888755
No 327
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.08 E-value=4.4 Score=35.83 Aligned_cols=180 Identities=16% Similarity=0.106 Sum_probs=101.1
Q ss_pred ceeeEEECCCEEEEEcCCeEEEEEccCCceE-eecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCccccceeee
Q 014003 235 EVGSLICEGPWVFVGMPNVVKAWHIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQLAALLK 313 (432)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~ 313 (432)
.+..+.+.....++-.++.+..|-......+ ........|..++......++-. ||.|+.|-.....+... +.
T Consensus 25 ~i~~ia~G~~h~~~l~~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~-P~---- 98 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALKGGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV-PA---- 98 (282)
T ss_dssp SCCEEEECSSEEEEEETTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC-CG----
T ss_pred CCcEEEeCCCeEEEEECCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC-Cc----
Confidence 4556666554433334999999976543222 11122346778888777333335 99999998665432111 11
Q ss_pred ccccCeEEEEEeCCEEEEEeCCCeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeCCCcEEEEEcCCCCceeEEe
Q 014003 314 GHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDNTIKVWIMTEEGNLEVAY 393 (432)
Q Consensus 314 ~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 393 (432)
.-...|..++....+.+.-. ||.|+.|-....-.+-.-......|..++.-..+.+.-. ||.|..|-......+....
T Consensus 99 ~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~ 176 (282)
T 3qhy_B 99 EARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPA 176 (282)
T ss_dssp GGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred ccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCce
Confidence 11346888888777766667 999999986542221111112345777777655555555 8999999776554433222
Q ss_pred eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeC
Q 014003 394 THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYEL 430 (432)
Q Consensus 394 ~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl 430 (432)
.....+..++. . ....++. .||.|..|-.
T Consensus 177 ~~~~~v~~i~~----G--~~hs~al--~~G~v~~wG~ 205 (282)
T 3qhy_B 177 EAQSGVDDVAG----G--IFHSLAL--KDGKVIAWGD 205 (282)
T ss_dssp GGGSSEEEEEE----C--SSEEEEE--ETTEEEEEEC
T ss_pred ecCCCeEEEEe----c--CCEEEEE--ECCeEEEEEC
Confidence 22233333333 1 1213333 5888888853
No 328
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.54 E-value=6.8 Score=39.71 Aligned_cols=144 Identities=10% Similarity=0.066 Sum_probs=78.5
Q ss_pred ECCCEEEEEc-----CCeEEEEEccCCceEeec---------CCcCCEEEEEEc-CC-EEEEEECC------CcEEEEEC
Q 014003 241 CEGPWVFVGM-----PNVVKAWHIESSAEFSLD---------GPVGEVYSMVVA-NE-MLFAGAQD------GNILVWKG 298 (432)
Q Consensus 241 ~~~~~l~~~~-----~~~i~vwd~~~~~~~~~~---------~~~~~v~~l~~~-~~-~l~~g~~d------g~i~~wd~ 298 (432)
.++.+++.|+ -+.+.++|+.++.-.... .....-....+. .+ +++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 3455554443 246778888877533222 111223344442 44 66666643 35788888
Q ss_pred CCCCCCccccceeeeccccCeEEEEE-eCCEEEEEeCCC--eEEEEECCCCceEEE-----ecCCCCCcEEEEEc---CC
Q 014003 299 IPNTQNPFQLAALLKGHTRPVTCLAV-GGKRLYSGSMDN--TIRVWDLDTLEAVMT-----LNGHTDAPMSLLCW---DQ 367 (432)
Q Consensus 299 ~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sgs~dg--~I~vwd~~~~~~~~~-----~~~~~~~v~~~~~~---~~ 367 (432)
.+.+ +..+..+......-.+..+ ++..++.|+.++ .+.+||..+.+-... +........++.+. +.
T Consensus 476 ~t~~---W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 476 KTRE---WSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ 552 (695)
T ss_dssp TTTE---EEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred CCCc---EEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE
Confidence 7754 3333333322233334444 688888887655 799999987643221 11112222334445 45
Q ss_pred EEEEEeC--C-----CcEEEEEcCCCC
Q 014003 368 YLLSCSL--D-----NTIKVWIMTEEG 387 (432)
Q Consensus 368 ~l~s~s~--d-----g~i~iwd~~~~~ 387 (432)
.++.|+. + +.+.+||+.+..
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 6677765 2 458899998876
No 329
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.43 E-value=6.4 Score=36.02 Aligned_cols=93 Identities=15% Similarity=0.203 Sum_probs=50.4
Q ss_pred cCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC------CCceeeEEEC-----CCEEEEEcC-------Ce
Q 014003 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL------GAEVGSLICE-----GPWVFVGMP-------NV 253 (432)
Q Consensus 192 ~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~------~~~~~~~~~~-----~~~l~~~~~-------~~ 253 (432)
-..-..|+|.|+|+++++ ..+|.|.+++ .++....... ......+..+ +..+.++.. +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345679999999985555 5669999998 4443222211 1223344433 345554422 67
Q ss_pred EEEEEccCCc-----e-Ee-ec---CCcCCEEEEEEcCC-EEEEE
Q 014003 254 VKAWHIESSA-----E-FS-LD---GPVGEVYSMVVANE-MLFAG 287 (432)
Q Consensus 254 i~vwd~~~~~-----~-~~-~~---~~~~~v~~l~~~~~-~l~~g 287 (432)
|..++..... . +. .. ........+++.++ .|.++
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVT 151 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEE
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEE
Confidence 7778776432 1 11 21 11122357888887 44443
No 330
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=92.21 E-value=5.4 Score=34.70 Aligned_cols=195 Identities=10% Similarity=0.022 Sum_probs=110.6
Q ss_pred EEeeccCce-eeCCCCCeEEEEeCCCCcEEEEEEe-cccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC
Q 014003 156 CYHWLSGNC-VKGDECRFWHSWFCGEGFTMLAKLE-GHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (432)
Q Consensus 156 ~~~~~~~~~-~~g~~d~~i~vw~~~~~~~~~~~l~-~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~ 233 (432)
.+.+....+ +....++.|...|.. + +.+..+. +-......|++.+++.++++.-.++.+.++++.....+....
T Consensus 33 a~~~~~~~L~aV~d~~~~I~~ld~~-g-~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~-- 108 (255)
T 3qqz_A 33 TWSAQSNTLFSTINKPAAIVEMTTN-G-DLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILK-- 108 (255)
T ss_dssp EEETTTTEEEEEEETTEEEEEEETT-C-CEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEE--
T ss_pred EEeCCCCEEEEEECCCCeEEEEeCC-C-CEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeee--
Confidence 333334433 345668888888887 4 4455542 223678889998888877776677888888876544221111
Q ss_pred CceeeEEECCCEEEEEcCCeEEEEEccCCceEeecCCcCCEEEEEEcCC--EEEEEECCCcEEEEECCCCCC-Cccccce
Q 014003 234 AEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGNILVWKGIPNTQ-NPFQLAA 310 (432)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~g~~dg~i~~wd~~~~~~-~~~~~~~ 310 (432)
...+. +...........+++++. .|+++.+.....+|.+..-.. .......
T Consensus 109 ----------------------~~~~~----~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~ 162 (255)
T 3qqz_A 109 ----------------------KIKIP----LQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISK 162 (255)
T ss_dssp ----------------------EEECC----CSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEE
T ss_pred ----------------------eeccc----cccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeec
Confidence 00000 000123445778888876 666666655555555441100 0011110
Q ss_pred e--e--eccccCeEEEEEe---CCEEEEEeCCCeEEEEECCCCceEEEecCCC---------CCcEEEEEc--CCEEEEE
Q 014003 311 L--L--KGHTRPVTCLAVG---GKRLYSGSMDNTIRVWDLDTLEAVMTLNGHT---------DAPMSLLCW--DQYLLSC 372 (432)
Q Consensus 311 ~--~--~~h~~~v~~l~~~---~~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~---------~~v~~~~~~--~~~l~s~ 372 (432)
. + ..+...+..++++ +.+++.......|.++|.+ ++.+..+.-.. ...-.++++ |+ |+..
T Consensus 163 ~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv 240 (255)
T 3qqz_A 163 DKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV 240 (255)
T ss_dssp CHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE
T ss_pred chhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE
Confidence 0 0 0122346788887 6678888888999999976 55655543221 245677777 54 5555
Q ss_pred eCCCcEEEEE
Q 014003 373 SLDNTIKVWI 382 (432)
Q Consensus 373 s~dg~i~iwd 382 (432)
++-+.++++.
T Consensus 241 sE~n~~y~f~ 250 (255)
T 3qqz_A 241 SEPNRFYRFT 250 (255)
T ss_dssp ETTTEEEEEE
T ss_pred cCCceEEEEE
Confidence 7777666554
No 331
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=91.94 E-value=0.045 Score=37.49 Aligned_cols=25 Identities=36% Similarity=0.891 Sum_probs=20.0
Q ss_pred CceeeeeeecCccCC-CCCccccccC
Q 014003 57 KKVLCVYFLEGRCNR-NPCRFAHTES 81 (432)
Q Consensus 57 ~~~~~~~~~~~~~~~-~p~~~l~~~~ 81 (432)
+..||+||..|.|.+ ..|+|+|...
T Consensus 15 k~~vCk~fl~G~C~~G~~C~fsH~~~ 40 (72)
T 2rhk_C 15 KTVVCKHWLRGLCKKGDQCEFLHEYD 40 (72)
T ss_dssp CCSBCHHHHTTCCCCGGGSSSBCSCC
T ss_pred cCeeCHHHhcCCCCCCCCCCCccccc
Confidence 457888888888888 6788888643
No 332
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=91.60 E-value=0.083 Score=35.96 Aligned_cols=23 Identities=30% Similarity=1.034 Sum_probs=18.1
Q ss_pred CceeeeeeecCccCCCCCccccc
Q 014003 57 KKVLCVYFLEGRCNRNPCRFAHT 79 (432)
Q Consensus 57 ~~~~~~~~~~~~~~~~p~~~l~~ 79 (432)
...+|.+|..|+|.|..|+|+|.
T Consensus 41 ~~~vC~~flkG~C~r~~C~y~H~ 63 (70)
T 3d2q_A 41 TVTVCMDYIKGRCSREKCKYFHP 63 (70)
T ss_dssp EEEBCHHHHTTCCCCTTCCSBCC
T ss_pred cceeccccCcCCCCCCCcCeeCC
Confidence 44778888888888888888884
No 333
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=90.39 E-value=0.083 Score=37.25 Aligned_cols=23 Identities=39% Similarity=0.904 Sum_probs=20.7
Q ss_pred ceeeeeeecCccCCC--CCcccccc
Q 014003 58 KVLCVYFLEGRCNRN--PCRFAHTE 80 (432)
Q Consensus 58 ~~~~~~~~~~~~~~~--p~~~l~~~ 80 (432)
-.||++|..|.|+|- .|+|.|..
T Consensus 9 ~~VCr~FlrG~C~r~d~~C~f~H~~ 33 (83)
T 3d2n_A 9 LEVCREFQRGTCSRPDTECKFAHPS 33 (83)
T ss_dssp EEBCTTGGGTCCCSCTTTCSSBCCC
T ss_pred chhcHHHhcCCCCCCCCCCCCcCCC
Confidence 379999999999997 99999964
No 334
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=90.05 E-value=13 Score=35.04 Aligned_cols=139 Identities=12% Similarity=0.151 Sum_probs=84.9
Q ss_pred CCCEEEEEcCCeEEEEEccCCceE---eecC--CcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCccc-------c
Q 014003 242 EGPWVFVGMPNVVKAWHIESSAEF---SLDG--PVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQ-------L 308 (432)
Q Consensus 242 ~~~~l~~~~~~~i~vwd~~~~~~~---~~~~--~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~-------~ 308 (432)
++.-++...++.||.-++.....+ .... ....+..+..+|+ .+++-..+..|.+..+..+...... .
T Consensus 31 n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q 110 (452)
T 3pbp_A 31 NGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQ 110 (452)
T ss_dssp TTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred CCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccc
Confidence 555566666778887777643322 2221 2336777888888 4444456678999998743211110 0
Q ss_pred ceeeec------cccCeEEEEEe-----CCEEEEEeCCCeEEEEECCCC--ceEEEec---------CCCCCcEEEEEcC
Q 014003 309 AALLKG------HTRPVTCLAVG-----GKRLYSGSMDNTIRVWDLDTL--EAVMTLN---------GHTDAPMSLLCWD 366 (432)
Q Consensus 309 ~~~~~~------h~~~v~~l~~~-----~~~l~sgs~dg~I~vwd~~~~--~~~~~~~---------~~~~~v~~~~~~~ 366 (432)
.+.+.- ...+|..+.|+ +..|++-..|+.|++||+... ++. .+. .....+.+++|.+
T Consensus 111 ~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 111 IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT
T ss_pred eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC
Confidence 112221 24679999996 779999999999999999852 222 332 2224567777773
Q ss_pred --C--EEEEEeCCCcEEEE
Q 014003 367 --Q--YLLSCSLDNTIKVW 381 (432)
Q Consensus 367 --~--~l~s~s~dg~i~iw 381 (432)
- |+++.+..|.|+-.
T Consensus 190 ~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 190 DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TSSCEEEEECTTSCEEEEE
T ss_pred CCcEEEEEecCCCCCEEEE
Confidence 2 44455577877653
No 335
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.86 E-value=0.093 Score=36.50 Aligned_cols=27 Identities=33% Similarity=0.812 Sum_probs=22.1
Q ss_pred cCceeeeeeecCccCC-CCCccccccCC
Q 014003 56 TKKVLCVYFLEGRCNR-NPCRFAHTESQ 82 (432)
Q Consensus 56 ~~~~~~~~~~~~~~~~-~p~~~l~~~~~ 82 (432)
.+..+|+||..|.|.+ ..|+|+|...+
T Consensus 8 ~k~~~C~~fl~G~C~~G~~C~fsH~~~~ 35 (77)
T 2d9n_A 8 EKTVVCKHWLRGLCKKGDQCEFLHEYDM 35 (77)
T ss_dssp CTTSBCHHHHTTCCSCTTSSSSBCSCCT
T ss_pred CcceeCHhHccCcCCCCCCCCCcccccc
Confidence 3568999999999998 78999997543
No 336
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.37 E-value=0.12 Score=37.69 Aligned_cols=23 Identities=30% Similarity=0.989 Sum_probs=15.3
Q ss_pred CceeeeeeecCccCCCCCccccc
Q 014003 57 KKVLCVYFLEGRCNRNPCRFAHT 79 (432)
Q Consensus 57 ~~~~~~~~~~~~~~~~p~~~l~~ 79 (432)
...||.+|..|+|.|-.|+|+|.
T Consensus 55 ~~~vC~~flkG~C~r~~C~y~H~ 77 (98)
T 2e5s_A 55 TVTVCMDYIKGRCMREKCKYFHP 77 (98)
T ss_dssp EEEBCHHHHHTCCCCTTCCSBCC
T ss_pred ccccchhhccCCCCCCCcCccCC
Confidence 34667777777777777777764
No 337
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.00 E-value=14 Score=37.40 Aligned_cols=183 Identities=9% Similarity=0.047 Sum_probs=98.9
Q ss_pred CCCCEEEEEeCC----CcEEEEeCCCCceeEEE-e-----CCC---ceeeEEE--CCCEEEEEc-------CCeEEEEEc
Q 014003 202 LRSDKLYSGSRD----GTVQLWDCHTGQSASVI-N-----LGA---EVGSLIC--EGPWVFVGM-------PNVVKAWHI 259 (432)
Q Consensus 202 ~~~~~l~s~s~D----g~v~iWd~~~~~~~~~~-~-----~~~---~~~~~~~--~~~~l~~~~-------~~~i~vwd~ 259 (432)
.++..++.|+.+ ..+.+||..+++-...- . ... ....... ++.+++.|+ -+.+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777753 46888998887655443 2 111 1123334 566555542 146788888
Q ss_pred cCCceEeecC---CcCCEEEEEE-cCCEEEEEECCC--cEEEEECCCCCCCcccccee---eeccccCeEEEEEe---CC
Q 014003 260 ESSAEFSLDG---PVGEVYSMVV-ANEMLFAGAQDG--NILVWKGIPNTQNPFQLAAL---LKGHTRPVTCLAVG---GK 327 (432)
Q Consensus 260 ~~~~~~~~~~---~~~~v~~l~~-~~~~l~~g~~dg--~i~~wd~~~~~~~~~~~~~~---~~~h~~~v~~l~~~---~~ 327 (432)
.+..=..... ....-.+..+ ...+++.|+.++ .+.+||..+.. +..+.. +........++.++ +.
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~---W~~~~~~g~~p~~r~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI---FKDVTPKDEFFQNSLVSAGLEFDPVSKQ 552 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE---EEECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc---eEEccCCCCCCCcccceeEEEEeCCCCE
Confidence 8764222211 1122233333 333667776654 68999988764 332221 11111122234555 55
Q ss_pred EEEEEeC--C-----CeEEEEECCCCc--------eEEEec-CCCCCcEEEEEc-CCEEEEEeC--------CCcEEEEE
Q 014003 328 RLYSGSM--D-----NTIRVWDLDTLE--------AVMTLN-GHTDAPMSLLCW-DQYLLSCSL--------DNTIKVWI 382 (432)
Q Consensus 328 ~l~sgs~--d-----g~I~vwd~~~~~--------~~~~~~-~~~~~v~~~~~~-~~~l~s~s~--------dg~i~iwd 382 (432)
.++.|+. + ..+.+||+.+.+ .+.... ........+... +.+++.|+. ...|.+||
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 6777765 2 468999998776 112211 112223445556 677777774 34589999
Q ss_pred cCCCC
Q 014003 383 MTEEG 387 (432)
Q Consensus 383 ~~~~~ 387 (432)
+.+.+
T Consensus 633 ~~t~~ 637 (695)
T 2zwa_A 633 PLSET 637 (695)
T ss_dssp TTTTE
T ss_pred CCCCe
Confidence 88764
No 338
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=88.97 E-value=22 Score=36.22 Aligned_cols=207 Identities=13% Similarity=0.146 Sum_probs=111.7
Q ss_pred eEEEEeCCCCcEEEEEEecccCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC--------CCceeeEEE--
Q 014003 172 FWHSWFCGEGFTMLAKLEGHKKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL--------GAEVGSLIC-- 241 (432)
Q Consensus 172 ~i~vw~~~~~~~~~~~l~~H~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~--------~~~~~~~~~-- 241 (432)
-+..++..++ +......-....|.++....+|.+.+ |+.+ -+.+++..+++....... ...+.++..
T Consensus 212 Gl~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~ 288 (758)
T 3ott_A 212 YLFQYFPSTG-QIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ 288 (758)
T ss_dssp EEEEEETTTT-EEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECT
T ss_pred CCeEEcCCCC-eEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC
Confidence 4666777654 22111111235688888887777555 4444 488888877654332211 122444544
Q ss_pred CCCEEEEEcCCeEEEEEccCCc-eEee-----cCCcCCEEEEEEcCC-EEEEEECCCcEEEEECCCCCCCcccccee---
Q 014003 242 EGPWVFVGMPNVVKAWHIESSA-EFSL-----DGPVGEVYSMVVANE-MLFAGAQDGNILVWKGIPNTQNPFQLAAL--- 311 (432)
Q Consensus 242 ~~~~l~~~~~~~i~vwd~~~~~-~~~~-----~~~~~~v~~l~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~~~~--- 311 (432)
++.+-++...| +.+......- .... ......|.++..+.+ .|..|+.+| +..++..++..........
T Consensus 289 ~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~ 366 (758)
T 3ott_A 289 EHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDK 366 (758)
T ss_dssp TCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCS
T ss_pred CCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCc
Confidence 34444444445 4443322111 1111 112346888888776 777777654 6667655432111111100
Q ss_pred -eeccccCeEEEEEe-CCEEEEEeCCCeEEEEECCCCceEEEe--cC----CCCCcEEEEEc-CCEEEEEeCCCcEEEEE
Q 014003 312 -LKGHTRPVTCLAVG-GKRLYSGSMDNTIRVWDLDTLEAVMTL--NG----HTDAPMSLLCW-DQYLLSCSLDNTIKVWI 382 (432)
Q Consensus 312 -~~~h~~~v~~l~~~-~~~l~sgs~dg~I~vwd~~~~~~~~~~--~~----~~~~v~~~~~~-~~~l~s~s~dg~i~iwd 382 (432)
.......|.++..+ ...|..|+ ++-|..||.++++...-. .. ....|.++..+ ...|..|+..+-+.++|
T Consensus 367 ~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~ 445 (758)
T 3ott_A 367 TYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVD 445 (758)
T ss_dssp SSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEE
T ss_pred CCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEc
Confidence 00123458888877 45566677 457999999887553321 11 12346777766 56788888777788888
Q ss_pred cC
Q 014003 383 MT 384 (432)
Q Consensus 383 ~~ 384 (432)
..
T Consensus 446 ~~ 447 (758)
T 3ott_A 446 KH 447 (758)
T ss_dssp HH
T ss_pred cc
Confidence 65
No 339
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=88.92 E-value=15 Score=34.37 Aligned_cols=190 Identities=11% Similarity=0.059 Sum_probs=112.6
Q ss_pred CcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC-------------ceeEEEeCCCceeeEEECCC-EEEEEcCCeEEEEE
Q 014003 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-------------QSASVINLGAEVGSLICEGP-WVFVGMPNVVKAWH 258 (432)
Q Consensus 193 ~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~-------------~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~i~vwd 258 (432)
..|..|+. .+.+.+.-..||.|..|-.... .....+.....+..+.+... .++...++.|..|-
T Consensus 75 ~~v~~va~--G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG 152 (423)
T 3mvd_K 75 PDAVDISA--GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWG 152 (423)
T ss_dssp SSEEEEEE--CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCceEEee--CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEe
Confidence 34666664 4566777788999999965321 11222233445666666444 45566899999997
Q ss_pred c--cCCceE-----------eecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCC------------------ccc
Q 014003 259 I--ESSAEF-----------SLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQN------------------PFQ 307 (432)
Q Consensus 259 ~--~~~~~~-----------~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~------------------~~~ 307 (432)
. .....+ ........|..++...+..++-..+|.|+.|-.....+. ...
T Consensus 153 ~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~ 232 (423)
T 3mvd_K 153 SFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLR 232 (423)
T ss_dssp CEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSS
T ss_pred CCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccC
Confidence 5 222111 111234568888888888888889999999964432110 011
Q ss_pred cceeeeccccCeEEEEEeCCEEEEE-eCCCeEEEEECCCC-----------ceEEEecCCCCCcEEEEEcCCEEEEEeCC
Q 014003 308 LAALLKGHTRPVTCLAVGGKRLYSG-SMDNTIRVWDLDTL-----------EAVMTLNGHTDAPMSLLCWDQYLLSCSLD 375 (432)
Q Consensus 308 ~~~~~~~h~~~v~~l~~~~~~l~sg-s~dg~I~vwd~~~~-----------~~~~~~~~~~~~v~~~~~~~~~l~s~s~d 375 (432)
+..........|..++......+.. ..||.|+.|-.... ............|..++.-..+.+.-..|
T Consensus 233 p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~alt~~ 312 (423)
T 3mvd_K 233 PTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTD 312 (423)
T ss_dssp CEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEEEETT
T ss_pred CeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEEEeCC
Confidence 1111112234566666665544444 68999999964321 11111111134677887777888888899
Q ss_pred CcEEEEEcC
Q 014003 376 NTIKVWIMT 384 (432)
Q Consensus 376 g~i~iwd~~ 384 (432)
|.|..|=..
T Consensus 313 G~v~~wG~n 321 (423)
T 3mvd_K 313 LKCSVVGRP 321 (423)
T ss_dssp CCEEEEECC
T ss_pred CcEEEEECC
Confidence 999999654
No 340
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=88.21 E-value=0.23 Score=33.87 Aligned_cols=45 Identities=20% Similarity=0.414 Sum_probs=31.4
Q ss_pred cccCCCC-CcccccccCCCCCcCceeeeeeec-CccCCCCCccccccCCC
Q 014003 36 RSLFNPV-NERAGGRVGGGWPTKKVLCVYFLE-GRCNRNPCRFAHTESQT 83 (432)
Q Consensus 36 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~l~~~~~~ 83 (432)
+|.+..+ +=++.|.+... ...+|.||.. |.|.+..|+|+|..++.
T Consensus 24 ~G~C~~G~~C~fsH~~~~~---~~~~C~~f~~~G~C~~~~C~y~H~~p~~ 70 (72)
T 2rhk_C 24 RGLCKKGDQCEFLHEYDMT---KMSECYFYSKFGECSNKECPFLHIDPES 70 (72)
T ss_dssp TTCCCCGGGSSSBCSCCTT---SCCBCHHHHHHSCCSBTTCCSBCCCCC-
T ss_pred cCCCCCCCCCCCccccccc---cCCcccccCCCCCCCCCCeeccCCCccc
Confidence 3555553 34555554322 5579999999 99999999999987554
No 341
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=87.76 E-value=8.1 Score=38.91 Aligned_cols=113 Identities=11% Similarity=0.224 Sum_probs=68.4
Q ss_pred CEEEEEEcCCEEEEEECCCcEEEEECCCCCCCcccc-----------ce-eee-----ccccCeEEEEEeCCEEEEEeCC
Q 014003 273 EVYSMVVANEMLFAGAQDGNILVWKGIPNTQNPFQL-----------AA-LLK-----GHTRPVTCLAVGGKRLYSGSMD 335 (432)
Q Consensus 273 ~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~-----------~~-~~~-----~h~~~v~~l~~~~~~l~sgs~d 335 (432)
+-.-++.+++.++++-.||.+.-.+-..... +++ +. -+. .....|.++.++..++++-+.|
T Consensus 163 Ph~L~avs~~~liVsL~DGGLLrL~r~~~~d--~~~~~Fnd~s~l~SL~~lf~~~~~~~~~~~Is~~~~~~~fLftL~~D 240 (729)
T 3f7f_A 163 PHFLFYVSPQFSVVFLEDGGLLGLKKVDGVH--YEPLLFNDNSYLKCLTRFFSRSSKSDYDSVISCKLFHERYLIVLTQN 240 (729)
T ss_dssp EEEEEECSSSBEEEEETTSCEECCEESSSSC--EECCCCCCCGGGGGGSTTCCTTCSSCCCCEEEEEEETTTEEEEEETT
T ss_pred CcEEEEECCCeEEEEEcCCCEEEEEeccCCC--cceeeecCCchhhhhHHhhcCCCCCCcCceEEEeccCCcEEEEEEcC
Confidence 3445566666777777777766655433211 000 00 011 1223477778889999999999
Q ss_pred CeEEEEECCCCceEEEecCCCC-------------CcEEEEEcCCEEEEEe--CCCcEEEEEcCCCC
Q 014003 336 NTIRVWDLDTLEAVMTLNGHTD-------------APMSLLCWDQYLLSCS--LDNTIKVWIMTEEG 387 (432)
Q Consensus 336 g~I~vwd~~~~~~~~~~~~~~~-------------~v~~~~~~~~~l~s~s--~dg~i~iwd~~~~~ 387 (432)
.++|+||+++++++.+..-... +-.-+...+.++++-+ .+|..++|.+....
T Consensus 241 h~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~~~lv~y~P~~~G~Fk~~~l~~~~ 307 (729)
T 3f7f_A 241 CHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTLVTLLPLENGLFQMGTLLVDS 307 (729)
T ss_dssp CEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESSSEEEEEETTTTCEEEEEEEEC--
T ss_pred CeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhheeeEEEEEecCCCCeEEEEEEEEcC
Confidence 9999999999998877643111 1111222256666554 57899999886443
No 342
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=87.57 E-value=21 Score=34.37 Aligned_cols=146 Identities=8% Similarity=0.016 Sum_probs=80.5
Q ss_pred ceEEeec-cCc-eeeCCCCCeEEEEeCCCCcEEEEEEec---ccCcEEEEEe-------cCCCCEEEEEeCCC-c-----
Q 014003 154 NVCYHWL-SGN-CVKGDECRFWHSWFCGEGFTMLAKLEG---HKKAVSGIAL-------PLRSDKLYSGSRDG-T----- 215 (432)
Q Consensus 154 ~~~~~~~-~~~-~~~g~~d~~i~vw~~~~~~~~~~~l~~---H~~~V~~l~~-------~~~~~~l~s~s~Dg-~----- 215 (432)
.+++.+. ... .++....+.|++.|.+++ .....+.. .......|+| ++++++|+.+...+ .
T Consensus 143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~ 221 (496)
T 3kya_A 143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNR-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP 221 (496)
T ss_dssp EEEEETTEEEEEEEEEETEEEEEEEETTTT-EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred EEEEccCCCCEEEEEECCCCeEEEEECCCC-EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence 5566652 333 333333467888888775 33322222 1235899999 99999776666554 2
Q ss_pred -EEEEeCCC-Ccee-----EEEe-CCCce-eeEEE-CCCEEEEE-cCCeEEEEEcc-------CCce-------------
Q 014003 216 -VQLWDCHT-GQSA-----SVIN-LGAEV-GSLIC-EGPWVFVG-MPNVVKAWHIE-------SSAE------------- 264 (432)
Q Consensus 216 -v~iWd~~~-~~~~-----~~~~-~~~~~-~~~~~-~~~~l~~~-~~~~i~vwd~~-------~~~~------------- 264 (432)
|.+.+... +... ..+. ...+. ..+.+ ++.++++. ..+.|..+|++ ++..
T Consensus 222 ~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~ 301 (496)
T 3kya_A 222 SVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFK 301 (496)
T ss_dssp EEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEE
T ss_pred eEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccc
Confidence 55665443 2221 2222 11111 12233 34455555 66789999987 4443
Q ss_pred -EeecCCcCCEEEEEEcCC--E-EEEEECCCcEEEEECCC
Q 014003 265 -FSLDGPVGEVYSMVVANE--M-LFAGAQDGNILVWKGIP 300 (432)
Q Consensus 265 -~~~~~~~~~v~~l~~~~~--~-l~~g~~dg~i~~wd~~~ 300 (432)
+...........++++++ . +++-+..+.|+.+|...
T Consensus 302 ~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 302 QLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred eeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 111222344578999987 3 44445677888866543
No 343
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=87.26 E-value=0.12 Score=36.98 Aligned_cols=23 Identities=35% Similarity=0.920 Sum_probs=20.9
Q ss_pred ceeeeeeecCccCCCCCcccccc
Q 014003 58 KVLCVYFLEGRCNRNPCRFAHTE 80 (432)
Q Consensus 58 ~~~~~~~~~~~~~~~p~~~l~~~ 80 (432)
-.+|++|..|+|+|.+|+|+|..
T Consensus 51 ~~vC~dflkG~C~r~~Cky~H~~ 73 (89)
T 2rpp_A 51 VIACFDSLKGRCSRENCKYLHPP 73 (89)
T ss_dssp EEBCHHHHHTCCCCTTCCSBCCC
T ss_pred eeeehhhhhCcCCCCCcceecCH
Confidence 48999999999999999999953
No 344
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=86.46 E-value=0.16 Score=35.81 Aligned_cols=45 Identities=20% Similarity=0.412 Sum_probs=29.8
Q ss_pred cccCCCC--CcccccccCCCC--CcCceeeeeeecCccCCCCCcccccc
Q 014003 36 RSLFNPV--NERAGGRVGGGW--PTKKVLCVYFLEGRCNRNPCRFAHTE 80 (432)
Q Consensus 36 ~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~l~~~ 80 (432)
+|-+..+ .=|+.|....-. +..-.+|.+|..|+|.|.+|+|+|..
T Consensus 17 rG~C~r~d~~C~f~H~~~~~~~~~~~~~vC~dflkG~C~r~~C~y~H~~ 65 (83)
T 3d2n_A 17 RGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRENCKYLHPP 65 (83)
T ss_dssp GTCCCSCTTTCSSBCCCTTCCEETTEEECCHHHHTTCCCCSSCSSCCCC
T ss_pred cCCCCCCCCCCCCcCCCccccccCCceeehhHhhhccccCCCcceeCCh
Confidence 3555555 445555542100 11348999999999999999999953
No 345
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=86.24 E-value=0.17 Score=36.17 Aligned_cols=24 Identities=38% Similarity=0.897 Sum_probs=21.0
Q ss_pred ceeeeeeecCccCCC--CCccccccC
Q 014003 58 KVLCVYFLEGRCNRN--PCRFAHTES 81 (432)
Q Consensus 58 ~~~~~~~~~~~~~~~--p~~~l~~~~ 81 (432)
..||+.|..|.|+|- .|+|.|...
T Consensus 17 ~~VCrdFlrG~C~r~d~~CrfsH~~~ 42 (89)
T 2rpp_A 17 LEVCRQFQRGTCSRSDEECKFAHPPK 42 (89)
T ss_dssp ECBCHHHHHTCCCCCTTTSSSBCCCS
T ss_pred hhhchHHhcCCCCCCCCCCCCcCCCc
Confidence 369999999999996 999999643
No 346
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.03 E-value=0.11 Score=37.92 Aligned_cols=24 Identities=46% Similarity=0.941 Sum_probs=21.0
Q ss_pred CceeeeeeecCccCCC--CCcccccc
Q 014003 57 KKVLCVYFLEGRCNRN--PCRFAHTE 80 (432)
Q Consensus 57 ~~~~~~~~~~~~~~~~--p~~~l~~~ 80 (432)
+..||++|..|.|+|- .|+|.|..
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~ 44 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPA 44 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCS
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCc
Confidence 4589999999999995 69999964
No 347
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=86.02 E-value=5.4 Score=33.90 Aligned_cols=99 Identities=12% Similarity=-0.023 Sum_probs=57.2
Q ss_pred cEEEEEecCCCCEEEEEeCCCcEEEEeCCCCce------eEEEeC-C-CceeeEE--ECCCEEEEEcCCeEEEEEccCCc
Q 014003 194 AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS------ASVINL-G-AEVGSLI--CEGPWVFVGMPNVVKAWHIESSA 263 (432)
Q Consensus 194 ~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~------~~~~~~-~-~~~~~~~--~~~~~l~~~~~~~i~vwd~~~~~ 263 (432)
.+..++|+|+|.+.+. .+|.+.--+..+.+. ...+-. . .....+. +++.+.++ .|+.|.-++..+..
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~ 118 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSD 118 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCST
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCC
Confidence 6679999998885555 677776666654221 112211 0 0113333 35556666 77888877753322
Q ss_pred e--E------eecCCcCCEEEEEEcCC-EEEEEECCCcEEEE
Q 014003 264 E--F------SLDGPVGEVYSMVVANE-MLFAGAQDGNILVW 296 (432)
Q Consensus 264 ~--~------~~~~~~~~v~~l~~~~~-~l~~g~~dg~i~~w 296 (432)
. . .-..--..+..+.+.|+ .|.+.. |+.++-.
T Consensus 119 ~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~ 159 (236)
T 1tl2_A 119 TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKA 159 (236)
T ss_dssp TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEE
T ss_pred CCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEec
Confidence 1 1 11122256789999999 666666 8886543
No 348
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=85.94 E-value=0.18 Score=34.31 Aligned_cols=24 Identities=42% Similarity=0.964 Sum_probs=20.6
Q ss_pred CceeeeeeecCccCCC--CCcccccc
Q 014003 57 KKVLCVYFLEGRCNRN--PCRFAHTE 80 (432)
Q Consensus 57 ~~~~~~~~~~~~~~~~--p~~~l~~~ 80 (432)
+..||++|..|.|+|- .|+|.|..
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~ 30 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPA 30 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCC
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCc
Confidence 3479999999999996 59999954
No 349
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=85.35 E-value=24 Score=32.94 Aligned_cols=150 Identities=9% Similarity=0.040 Sum_probs=89.3
Q ss_pred CceeeEEECCC-EEEEEcCCeEEEEEccCCce-------------EeecCCcCCEEEEEEcCCEEEEEECCCcEEEEEC-
Q 014003 234 AEVGSLICEGP-WVFVGMPNVVKAWHIESSAE-------------FSLDGPVGEVYSMVVANEMLFAGAQDGNILVWKG- 298 (432)
Q Consensus 234 ~~~~~~~~~~~-~l~~~~~~~i~vwd~~~~~~-------------~~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~- 298 (432)
..+..+.+... .++...++.|..|-...... .........|..++......++-..||.|+.|-.
T Consensus 75 ~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~ 154 (423)
T 3mvd_K 75 PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSF 154 (423)
T ss_dssp SSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECE
T ss_pred CCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCC
Confidence 34566666544 45566899999996533111 0111233567888888887777889999999985
Q ss_pred -CCCCC-------CccccceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCC-----------------------c
Q 014003 299 -IPNTQ-------NPFQLAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTL-----------------------E 347 (432)
Q Consensus 299 -~~~~~-------~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~-----------------------~ 347 (432)
....+ ....++.. .....|..++....+.+.-..||.|+.|-.... .
T Consensus 155 ~n~~GqlG~~~~~~~~~p~~~--~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~ 232 (423)
T 3mvd_K 155 RDSHGNMGLTIDGNKRTPIDL--MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLR 232 (423)
T ss_dssp ECSSSEEESBTTBCEEEEEES--STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSS
T ss_pred CCCCCCcCcCCCCCCceeeEe--cCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccC
Confidence 22110 00111111 123467778777778888889999999964321 1
Q ss_pred eEEEecCCCCCcEEEEEcCCEEEEE-eCCCcEEEEEcCC
Q 014003 348 AVMTLNGHTDAPMSLLCWDQYLLSC-SLDNTIKVWIMTE 385 (432)
Q Consensus 348 ~~~~~~~~~~~v~~~~~~~~~l~s~-s~dg~i~iwd~~~ 385 (432)
+..........+..++......+.. ..||.|..|-...
T Consensus 233 p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~ 271 (423)
T 3mvd_K 233 PTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNN 271 (423)
T ss_dssp CEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECT
T ss_pred CeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCC
Confidence 1111112233466666665544444 6899999997554
No 350
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=83.73 E-value=0.34 Score=35.38 Aligned_cols=24 Identities=33% Similarity=0.955 Sum_probs=20.3
Q ss_pred cCceeeeeeecCccCCC-CCccccc
Q 014003 56 TKKVLCVYFLEGRCNRN-PCRFAHT 79 (432)
Q Consensus 56 ~~~~~~~~~~~~~~~~~-p~~~l~~ 79 (432)
.+..+|+||..|.|.+- .|+|.|.
T Consensus 11 ~k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 11 KKRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CCCccCcccccCcCCCCCCCCCCCC
Confidence 35689999999999984 5999997
No 351
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=80.04 E-value=38 Score=31.45 Aligned_cols=191 Identities=14% Similarity=0.122 Sum_probs=113.9
Q ss_pred CcEEEEEecCCCCEEEEEeCCCcEEEEeC--CC-Cc-----------eeEEEeCCCceeeEEECCC-EEEEEcCCeEEEE
Q 014003 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDC--HT-GQ-----------SASVINLGAEVGSLICEGP-WVFVGMPNVVKAW 257 (432)
Q Consensus 193 ~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~--~~-~~-----------~~~~~~~~~~~~~~~~~~~-~l~~~~~~~i~vw 257 (432)
..|..|+. .....+.-..||.|..|-. .. ++ ....+.....+..+.+... .++...++.|..|
T Consensus 111 ~~i~~va~--G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G~~hs~alt~~G~v~~w 188 (413)
T 1a12_A 111 EKVVQVSA--GDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTL 188 (413)
T ss_dssp SCEEEEEE--CSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CcEEEEec--CCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEecCceEEEEcCCCCEEEe
Confidence 36766664 3445666678899999975 21 11 1222223445666766544 4455688999999
Q ss_pred EccCCce-------------------------EeecC----CcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCC----
Q 014003 258 HIESSAE-------------------------FSLDG----PVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQN---- 304 (432)
Q Consensus 258 d~~~~~~-------------------------~~~~~----~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~---- 304 (432)
-...... +.... ....|..++......++-..+|.|+.|-.....+.
T Consensus 189 G~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~ 268 (413)
T 1a12_A 189 GCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPG 268 (413)
T ss_dssp ECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSS
T ss_pred eCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCC
Confidence 6543211 01100 23567888888887777789999999976542210
Q ss_pred ---ccccc--eeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCC---------c---eEEEecCCCCCcEEEEEcCC
Q 014003 305 ---PFQLA--ALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTL---------E---AVMTLNGHTDAPMSLLCWDQ 367 (432)
Q Consensus 305 ---~~~~~--~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~---------~---~~~~~~~~~~~v~~~~~~~~ 367 (432)
...+. ..+......|..++....+.+.-..||.|+.|-.... . .-..+.. -..|..+++-..
T Consensus 269 ~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~-l~~v~~v~~G~~ 347 (413)
T 1a12_A 269 TESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR-LPAVSSVACGAS 347 (413)
T ss_dssp CSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS-SSSEEEEEECSS
T ss_pred CCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecc-cCceeEEEECcc
Confidence 00111 1111111347777776777777788999999975321 0 1112222 226778877777
Q ss_pred EEEEEeCCCcEEEEEcCCC
Q 014003 368 YLLSCSLDNTIKVWIMTEE 386 (432)
Q Consensus 368 ~l~s~s~dg~i~iwd~~~~ 386 (432)
+.++-..||.|..|=....
T Consensus 348 hs~alt~~G~v~~wG~n~~ 366 (413)
T 1a12_A 348 VGYAVTKDGRVFAWGMGTN 366 (413)
T ss_dssp EEEEEETTSCEEEEECCTT
T ss_pred eEEEEeCCCCEEEecCCCC
Confidence 8888889999999976543
No 352
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.87 E-value=1.1 Score=30.87 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=30.9
Q ss_pred ccCCC-CCcccccccCCCCCcCceeeeeeec-CccCCCCCccccccCCC
Q 014003 37 SLFNP-VNERAGGRVGGGWPTKKVLCVYFLE-GRCNRNPCRFAHTESQT 83 (432)
Q Consensus 37 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~l~~~~~~ 83 (432)
|.+.. ++=++.|.+... +..+|.||.. |.|....|+|.|..++.
T Consensus 19 G~C~~G~~C~fsH~~~~~---~~~~C~~f~~~G~C~~~~C~f~H~~~~~ 64 (77)
T 2d9n_A 19 GLCKKGDQCEFLHEYDMT---KMPECYFYSKFGECSNKECPFLHIDPES 64 (77)
T ss_dssp TCCSCTTSSSSBCSCCTT---TSCBCHHHHHTCCCCCSSCSSBCCCTTS
T ss_pred CcCCCCCCCCCccccccC---cCCCCcccCCCCccCCCCeeccCCCccc
Confidence 44444 334555555332 4578999999 99999999999976543
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.28 E-value=13 Score=39.27 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=35.0
Q ss_pred cEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC
Q 014003 194 AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (432)
Q Consensus 194 ~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~ 233 (432)
.|.+++..++..+++|-+.|+++|+|++.+++++.+....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 5677777888899999999999999999999999887653
No 354
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=77.57 E-value=42 Score=30.60 Aligned_cols=121 Identities=10% Similarity=0.113 Sum_probs=61.4
Q ss_pred CCcEEEEECCCCCCCccccceeeeccc-cCeEEEEEe--CCEEEEEe-----------------CCCeEEEEECCCCceE
Q 014003 290 DGNILVWKGIPNTQNPFQLAALLKGHT-RPVTCLAVG--GKRLYSGS-----------------MDNTIRVWDLDTLEAV 349 (432)
Q Consensus 290 dg~i~~wd~~~~~~~~~~~~~~~~~h~-~~v~~l~~~--~~~l~sgs-----------------~dg~I~vwd~~~~~~~ 349 (432)
+.+|.+|++..+... ...+..+.+.. ...+.+.++ |.+.++.. ..|.|.-+|.. +.
T Consensus 138 ~s~ielf~~d~~~~~-~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~- 213 (355)
T 3sre_A 138 SSTVEVFKFQEEEKS-LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DV- 213 (355)
T ss_dssp CCEEEEEEEETTTTE-EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CC-
T ss_pred CCeEEEEEEECCCCE-EEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eE-
Confidence 456777776654321 23333443321 245667665 55555543 12556666653 32
Q ss_pred EEecCCCCCcEEEEEc--CCEEEEE-eCCCcEEEEEcCCCCceeEE--eeccCCcceEEEeeeeCC-CCCcEEEEE
Q 014003 350 MTLNGHTDAPMSLLCW--DQYLLSC-SLDNTIKVWIMTEEGNLEVA--YTHNEDHGVLALGGLNDP-DGNPVLICS 419 (432)
Q Consensus 350 ~~~~~~~~~v~~~~~~--~~~l~s~-s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~sp-~g~~~l~sg 419 (432)
..+...-.....++++ ++.|+.+ +..+.|..|++.....+... .........+++ ++ +|. +.+++
T Consensus 214 ~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~v----D~e~G~-lwva~ 284 (355)
T 3sre_A 214 RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISV----DPVTGD-LWVGC 284 (355)
T ss_dssp EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEE----CTTTCC-EEEEE
T ss_pred EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEE----eCCCCc-EEEEe
Confidence 2222222335677777 5555554 56789999999754333221 122222334444 67 488 44444
No 355
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.07 E-value=24 Score=37.14 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=29.1
Q ss_pred CeEEEEEe--CCEEEEEeCCCeEEEEECCCCceEEEec
Q 014003 318 PVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEAVMTLN 353 (432)
Q Consensus 318 ~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~~~~~~ 353 (432)
.+.++... ..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 34455543 6699999999999999999999988763
No 356
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=70.16 E-value=63 Score=29.19 Aligned_cols=69 Identities=13% Similarity=0.088 Sum_probs=40.6
Q ss_pred ceEEeeccCceeeCCCCCeEEEEeCCCCcEEEEEEe---cccCcEEEEEecCC---CCEEEEEeC-C-----CcEEEEeC
Q 014003 154 NVCYHWLSGNCVKGDECRFWHSWFCGEGFTMLAKLE---GHKKAVSGIALPLR---SDKLYSGSR-D-----GTVQLWDC 221 (432)
Q Consensus 154 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~l~---~H~~~V~~l~~~~~---~~~l~s~s~-D-----g~v~iWd~ 221 (432)
.+++.+.+..++ +...+.|++++ +...+.+..+. ........|+|+|+ +..|+.+.. + ..|..++.
T Consensus 35 ~ia~~pdG~l~V-~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~ 112 (352)
T 2ism_A 35 ALAFLPDGGMLI-AERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRH 112 (352)
T ss_dssp EEEECTTSCEEE-EETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEE
T ss_pred EEEEcCCCeEEE-EeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEe
Confidence 455555555344 44558899988 33223333222 22457899999998 555554433 2 56888887
Q ss_pred CCC
Q 014003 222 HTG 224 (432)
Q Consensus 222 ~~~ 224 (432)
..+
T Consensus 113 ~~~ 115 (352)
T 2ism_A 113 LGE 115 (352)
T ss_dssp CSS
T ss_pred CCC
Confidence 644
No 357
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=69.07 E-value=70 Score=29.33 Aligned_cols=167 Identities=12% Similarity=0.157 Sum_probs=93.4
Q ss_pred CcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEcCCeEEEEEccCCceEeec-CCc
Q 014003 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGMPNVVKAWHIESSAEFSLD-GPV 271 (432)
Q Consensus 193 ~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~-~~~ 271 (432)
..+..++++......+.-..||.|..|-....-.+.. ...... ....... -..
T Consensus 105 ~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~---g~~~~~-----------------------~~p~~v~~l~~ 158 (389)
T 3kci_A 105 VFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH---GNRSPC-----------------------DRPRVIESLRG 158 (389)
T ss_dssp SCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS---SSCCCE-----------------------EEEEECGGGTT
T ss_pred CceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC---CCCccC-----------------------cCCeEecccCC
Confidence 3455566766777777788899999996543111000 000000 0000011 112
Q ss_pred CCEEEEEEcCCEEEEEECCCcEEEEECCCCCC-------CccccceeeeccccCeEEEEEe--CCEEEEEeCCCeEEEEE
Q 014003 272 GEVYSMVVANEMLFAGAQDGNILVWKGIPNTQ-------NPFQLAALLKGHTRPVTCLAVG--GKRLYSGSMDNTIRVWD 342 (432)
Q Consensus 272 ~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~-------~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~vwd 342 (432)
..|..++......++-..+|.|+.|-.....+ ....+..........|..++.. ..+.+.-..||.|+.|-
T Consensus 159 ~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG 238 (389)
T 3kci_A 159 IEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWG 238 (389)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEE
T ss_pred CeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEe
Confidence 35777777777777778899999996543111 0011111111123356666664 36777778999999997
Q ss_pred CCCC-c----------eEEEecC-CCCCcEEEEEcCCEEEEEeCCCcEEEEEcCC
Q 014003 343 LDTL-E----------AVMTLNG-HTDAPMSLLCWDQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 343 ~~~~-~----------~~~~~~~-~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~ 385 (432)
.... + ....+.. ....|..+++-..+.++-..||.|..|-...
T Consensus 239 ~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 239 DGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGD 293 (389)
T ss_dssp CCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCG
T ss_pred CCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCC
Confidence 5421 1 1112222 2234777777777777888999999997643
No 358
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=69.04 E-value=28 Score=29.49 Aligned_cols=135 Identities=13% Similarity=0.039 Sum_probs=65.3
Q ss_pred EEEEEECCCcEEEEECCCCCCCccccceeeecc--ccCeEEEEEe--CCEEEEEeCCCeEEEEECCCCce------EEEe
Q 014003 283 MLFAGAQDGNILVWKGIPNTQNPFQLAALLKGH--TRPVTCLAVG--GKRLYSGSMDNTIRVWDLDTLEA------VMTL 352 (432)
Q Consensus 283 ~l~~g~~dg~i~~wd~~~~~~~~~~~~~~~~~h--~~~v~~l~~~--~~~l~sgs~dg~I~vwd~~~~~~------~~~~ 352 (432)
+|++...| +++.=.........+.......+. =..+..++|+ +.+.++ .+|.++-.+..+... -..+
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I 82 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKI 82 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEe
Confidence 56666666 655554444432222111111222 2467789998 554444 788887777655221 1111
Q ss_pred cC-CCCCcEEEEEc-CCEEEEEeCCCcEEEEEcCCCCceeEEe-----e--ccCCcceEEEeeeeCCCCCcEEEEEeCCC
Q 014003 353 NG-HTDAPMSLLCW-DQYLLSCSLDNTIKVWIMTEEGNLEVAY-----T--HNEDHGVLALGGLNDPDGNPVLICSCNDD 423 (432)
Q Consensus 353 ~~-~~~~v~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~--~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg 423 (432)
-. --..-.++.++ +..|.++ .||.|+-++-.+...-..+. . .-.....+.+ +|+|. +.+. . |+
T Consensus 83 G~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff----~p~G~-Lyav-~-dg 154 (236)
T 1tl2_A 83 GNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFF----HPNGY-LYAV-H-GQ 154 (236)
T ss_dssp ECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEE----CTTSC-EEEE-E-TT
T ss_pred cccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEE----CCCce-EEEE-e-CC
Confidence 10 00012455666 3334444 67999888764432211111 0 1122333444 89998 4444 4 77
Q ss_pred eEEEe
Q 014003 424 SVHLY 428 (432)
Q Consensus 424 ~I~iw 428 (432)
.++-+
T Consensus 155 ~lyr~ 159 (236)
T 1tl2_A 155 QFYKA 159 (236)
T ss_dssp EEEEE
T ss_pred cEEec
Confidence 76433
No 359
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=68.11 E-value=76 Score=29.33 Aligned_cols=193 Identities=12% Similarity=0.151 Sum_probs=111.8
Q ss_pred cCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC-c----------eeEEEe--CCCceeeEEECCCEEE-EEcCC-eEEE
Q 014003 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-Q----------SASVIN--LGAEVGSLICEGPWVF-VGMPN-VVKA 256 (432)
Q Consensus 192 ~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~-~----------~~~~~~--~~~~~~~~~~~~~~l~-~~~~~-~i~v 256 (432)
...|..|+. .....+.-..||+|..|=.... + ....+. ....+..+.+.....+ ...++ .|..
T Consensus 15 ~~~v~~ia~--G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~ 92 (406)
T 4d9s_A 15 PRKVLIISA--GASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYS 92 (406)
T ss_dssp CCCEEEEEE--CSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEE
T ss_pred ccceEEEec--CCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEE
Confidence 345666664 3445556667888888864321 1 111111 1234666666555444 45554 8999
Q ss_pred EEccCCc---------eE---eecC-CcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCc------cccceeeec-cc
Q 014003 257 WHIESSA---------EF---SLDG-PVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNP------FQLAALLKG-HT 316 (432)
Q Consensus 257 wd~~~~~---------~~---~~~~-~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~------~~~~~~~~~-h~ 316 (432)
|-..... .. .... ....|..++......++-..+|.|+.|-.....+.. ......+.. ..
T Consensus 93 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~ 172 (406)
T 4d9s_A 93 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG 172 (406)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTT
T ss_pred EcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCC
Confidence 9643211 11 1111 223688888887877888899999999755432100 000111111 12
Q ss_pred cCeEEEEEeCCEEEEEeCCCeEEEEECCCC-c---------e-EEEecC-CCCCcEEEEEcCCEEEEEeCCCcEEEEEcC
Q 014003 317 RPVTCLAVGGKRLYSGSMDNTIRVWDLDTL-E---------A-VMTLNG-HTDAPMSLLCWDQYLLSCSLDNTIKVWIMT 384 (432)
Q Consensus 317 ~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~-~---------~-~~~~~~-~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~ 384 (432)
..|..++....+.+.-..||.|+.|-.... + . ...+.. ....+..+++-..+.+.-..||.|+.|-..
T Consensus 173 ~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n 252 (406)
T 4d9s_A 173 IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWS 252 (406)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCC
Confidence 367777777778888889999999974321 1 1 111111 224577777777888888899999999755
Q ss_pred CC
Q 014003 385 EE 386 (432)
Q Consensus 385 ~~ 386 (432)
..
T Consensus 253 ~~ 254 (406)
T 4d9s_A 253 KY 254 (406)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 360
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=67.54 E-value=78 Score=29.27 Aligned_cols=190 Identities=11% Similarity=0.016 Sum_probs=114.7
Q ss_pred cCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCC-c------------eeEEEeCCCceeeEEECCC-EEEEEcCCeEEEE
Q 014003 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTG-Q------------SASVINLGAEVGSLICEGP-WVFVGMPNVVKAW 257 (432)
Q Consensus 192 ~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~-~------------~~~~~~~~~~~~~~~~~~~-~l~~~~~~~i~vw 257 (432)
...|..++.. ..+.+.-..||.|..|-.... + ....+.....+..+.+... .++...++.|..|
T Consensus 58 ~~~i~~va~G--~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~G~~hs~alt~~G~v~~w 135 (413)
T 1a12_A 58 PEDVVQAEAG--GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLW 135 (413)
T ss_dssp SSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCCeEEEEeC--CCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEecCCCeEEEEcCCCcEEEe
Confidence 3567777653 445666678899999965431 1 1122233445666766544 4455688999999
Q ss_pred Ec--cCCceE------------eecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCc------------------
Q 014003 258 HI--ESSAEF------------SLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNP------------------ 305 (432)
Q Consensus 258 d~--~~~~~~------------~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~------------------ 305 (432)
-. .....+ ........|..++...+..++-..||.|+.|-.....+..
T Consensus 136 G~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~ 215 (413)
T 1a12_A 136 GSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERL 215 (413)
T ss_dssp ECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHH
T ss_pred eCCcCCCCccCcCCccccccCCEEecCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccccccc
Confidence 75 211110 1112345678888877777778899999999765421100
Q ss_pred cccceeeec------cccCeEEEEEeCCEEEEEeCCCeEEEEECCCC-c----------eEEEecCC---CCCcEEEEEc
Q 014003 306 FQLAALLKG------HTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTL-E----------AVMTLNGH---TDAPMSLLCW 365 (432)
Q Consensus 306 ~~~~~~~~~------h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~-~----------~~~~~~~~---~~~v~~~~~~ 365 (432)
..+ ..... ....|..++....+.+.-..||.|+.|-.... + ....+... ...|..++.-
T Consensus 216 ~~P-~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G 294 (413)
T 1a12_A 216 LVP-KCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGG 294 (413)
T ss_dssp HSC-EECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEEC
T ss_pred ccC-ceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecc
Confidence 001 00111 23467777777777777789999999976531 1 01112111 1347777777
Q ss_pred CCEEEEEeCCCcEEEEEcC
Q 014003 366 DQYLLSCSLDNTIKVWIMT 384 (432)
Q Consensus 366 ~~~l~s~s~dg~i~iwd~~ 384 (432)
..+.++-..||.|+.|-..
T Consensus 295 ~~hs~al~~~G~v~~wG~n 313 (413)
T 1a12_A 295 QHHTVCMDSEGKAYSLGRA 313 (413)
T ss_dssp SSEEEEEETTSCEEEEECC
T ss_pred cceEEEEeCCCCEEEeeCC
Confidence 7777778899999999654
No 361
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=63.96 E-value=1e+02 Score=29.23 Aligned_cols=152 Identities=14% Similarity=0.113 Sum_probs=91.0
Q ss_pred CceeeEEECCC-EEEEEcCCeEEEEEcc---CCce-------------EeecC-CcCCEEEEEEcCCEEEEEECCCcEEE
Q 014003 234 AEVGSLICEGP-WVFVGMPNVVKAWHIE---SSAE-------------FSLDG-PVGEVYSMVVANEMLFAGAQDGNILV 295 (432)
Q Consensus 234 ~~~~~~~~~~~-~l~~~~~~~i~vwd~~---~~~~-------------~~~~~-~~~~v~~l~~~~~~l~~g~~dg~i~~ 295 (432)
..+..+.+... .++...+|.|..|-.. .++. ..... ....|..++...+..++-..+|.|+.
T Consensus 148 ~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~ 227 (473)
T 3of7_A 148 HKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFA 227 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEE
T ss_pred CcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEE
Confidence 44556665444 4455688999999751 1110 11111 12348888888888888889999999
Q ss_pred EECCCCCCCccc--------cceeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCC------------ceE---EEe
Q 014003 296 WKGIPNTQNPFQ--------LAALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTL------------EAV---MTL 352 (432)
Q Consensus 296 wd~~~~~~~~~~--------~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~------------~~~---~~~ 352 (432)
|-.....+.... ...........|..++......+.-+.+|.|+.|-.... ..+ ..+
T Consensus 228 wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v 307 (473)
T 3of7_A 228 WGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRL 307 (473)
T ss_dssp EECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEEC
T ss_pred EeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccc
Confidence 975442210000 000000112467777777777788888999999964321 111 111
Q ss_pred cC-CCCCcEEEEEcCCEEEEEeCCCcEEEEEcCC
Q 014003 353 NG-HTDAPMSLLCWDQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 353 ~~-~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~ 385 (432)
.. ....|..+++-..+-+.-..||.|..|-...
T Consensus 308 ~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~ 341 (473)
T 3of7_A 308 ALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLD 341 (473)
T ss_dssp CCCTTCCEEEEEECSSEEEEEETTSCEEEEEECT
T ss_pred cccCCccEEEEEeCCCeEEEEeCCCeEEEEECCC
Confidence 11 2245777877777777778999999997654
No 362
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=61.15 E-value=1e+02 Score=28.42 Aligned_cols=191 Identities=12% Similarity=0.136 Sum_probs=110.3
Q ss_pred CcEEEEEecCCCCEEEEEeCC-CcEEEEeCCCC---------ceeEEEe----CCCceeeEEECCC-EEEEEcCCeEEEE
Q 014003 193 KAVSGIALPLRSDKLYSGSRD-GTVQLWDCHTG---------QSASVIN----LGAEVGSLICEGP-WVFVGMPNVVKAW 257 (432)
Q Consensus 193 ~~V~~l~~~~~~~~l~s~s~D-g~v~iWd~~~~---------~~~~~~~----~~~~~~~~~~~~~-~l~~~~~~~i~vw 257 (432)
..|..++.. ..+.+.-..| +.|..|-.... ....... ....+..+.+... .++...++.|..|
T Consensus 68 ~~i~~va~G--~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~w 145 (406)
T 4d9s_A 68 HQIVSVTCG--ADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSW 145 (406)
T ss_dssp SCEEEEEEC--SSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCEEEEEeC--cceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEe
Confidence 467777753 3344444455 48999954321 1111111 1224666666544 4556689999999
Q ss_pred EccCCce---------E---eecC-CcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCC-------ccccceeeecccc
Q 014003 258 HIESSAE---------F---SLDG-PVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQN-------PFQLAALLKGHTR 317 (432)
Q Consensus 258 d~~~~~~---------~---~~~~-~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~-------~~~~~~~~~~h~~ 317 (432)
-...... . .... ....|..++...+..++-..+|.|+.|-.....+. ...+.........
T Consensus 146 G~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~ 225 (406)
T 4d9s_A 146 GRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGE 225 (406)
T ss_dssp ECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTC
T ss_pred CCCCCccCCCCCCCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCc
Confidence 7543211 1 1111 12367888888887788889999999975432110 0011111111224
Q ss_pred CeEEEEEeCCEEEEEeCCCeEEEEECCCC-c----------eEEEecC-CCCCcEEEEEcCCEEEEEeCCCcEEEEEcCC
Q 014003 318 PVTCLAVGGKRLYSGSMDNTIRVWDLDTL-E----------AVMTLNG-HTDAPMSLLCWDQYLLSCSLDNTIKVWIMTE 385 (432)
Q Consensus 318 ~v~~l~~~~~~l~sgs~dg~I~vwd~~~~-~----------~~~~~~~-~~~~v~~~~~~~~~l~s~s~dg~i~iwd~~~ 385 (432)
.|..++....+.+.-+.||.|+.|-.... + ....+.. ....|..++.-..+.++-..||.|..|=...
T Consensus 226 ~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~ 305 (406)
T 4d9s_A 226 KMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNK 305 (406)
T ss_dssp CEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred eEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCC
Confidence 57777777777777889999999975431 1 1111221 2234777777777777888999999997554
No 363
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=60.62 E-value=16 Score=39.47 Aligned_cols=28 Identities=32% Similarity=0.323 Sum_probs=25.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCceEEEec
Q 014003 326 GKRLYSGSMDNTIRVWDLDTLEAVMTLN 353 (432)
Q Consensus 326 ~~~l~sgs~dg~I~vwd~~~~~~~~~~~ 353 (432)
..++++-+.|+++|+||+.+++++.+..
T Consensus 249 ~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 249 YNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 6899999999999999999999988763
No 364
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=59.97 E-value=3.2 Score=28.44 Aligned_cols=25 Identities=40% Similarity=0.810 Sum_probs=21.0
Q ss_pred Cceeeeee-ecCccCC-CCCccccccC
Q 014003 57 KKVLCVYF-LEGRCNR-NPCRFAHTES 81 (432)
Q Consensus 57 ~~~~~~~~-~~~~~~~-~p~~~l~~~~ 81 (432)
+..+|.+| +.|.|.. .-|+|.|...
T Consensus 11 kt~~C~~f~~~G~C~~G~~C~f~H~~~ 37 (77)
T 1m9o_A 11 KTELCRTYSESGRCRYGAKCQFAHGLG 37 (77)
T ss_dssp CSCCCSGGGGTSCCTTTTTCSSCSSSC
T ss_pred cchhCHHhhhCCCcCCCCCccCCCCCh
Confidence 45899999 5999997 8999999753
No 365
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=59.97 E-value=1e+02 Score=27.90 Aligned_cols=32 Identities=22% Similarity=0.135 Sum_probs=23.5
Q ss_pred cCcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 014003 192 KKAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQ 225 (432)
Q Consensus 192 ~~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~ 225 (432)
-.....|+|.|+|++++ +..+|.|.++| .+++
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~ 59 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGK 59 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCc
Confidence 35578999999998555 45669999997 3454
No 366
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=59.91 E-value=92 Score=27.48 Aligned_cols=124 Identities=7% Similarity=0.032 Sum_probs=65.1
Q ss_pred CeEEEEEccCCceEeecCCcCCEEEEEEcCCEEEEEE----CCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCC
Q 014003 252 NVVKAWHIESSAEFSLDGPVGEVYSMVVANEMLFAGA----QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGK 327 (432)
Q Consensus 252 ~~i~vwd~~~~~~~~~~~~~~~v~~l~~~~~~l~~g~----~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 327 (432)
..|+..++...+...+.... ...+.+..+.|+-.. .+..|+..++.... ...+..+.. ..+.+.++
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~------~~~lt~~~~--~~~~~~g~ 157 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPDP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE------KKKIKNHYL--FTCNTSDR 157 (302)
T ss_dssp EEEEEEETTSCCCEEEECSC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC------CEEEESSCC--CCSEEETT
T ss_pred CeEEEEeCCCCcceEeecCC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC------eEEEeCCCc--eEeeEECC
Confidence 36777777777654444332 235566666555544 34455556665432 222322222 23466777
Q ss_pred EEEEEeC-CCeEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeCCC--cEEEEEcCCCC
Q 014003 328 RLYSGSM-DNTIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSLDN--TIKVWIMTEEG 387 (432)
Q Consensus 328 ~l~sgs~-dg~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~dg--~i~iwd~~~~~ 387 (432)
.|+-.+. ...|.+.++..+.....+.+.. . ..+...+.+|+-...++ .|..-++....
T Consensus 158 ~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~-~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 158 YFYYNNPKNGQLYRYDTASQSEALFYDCNC-Y-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp EEEEECTTTCCEEEEETTTTEEEEEECSCE-E-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred EEEEEeCCCceEEEEECCCCCEEEEeCCCc-c-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 7765554 6789999987766544443211 1 12333566666554432 45555554433
No 367
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=59.02 E-value=16 Score=36.80 Aligned_cols=38 Identities=11% Similarity=0.174 Sum_probs=31.9
Q ss_pred CcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeC
Q 014003 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINL 232 (432)
Q Consensus 193 ~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~ 232 (432)
..|.++.+ +..++++-+.|.++|+||+.+++++.+...
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34666655 477999999999999999999999988876
No 368
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.73 E-value=8 Score=41.74 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=33.5
Q ss_pred cEEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeEEEeCC
Q 014003 194 AVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQSASVINLG 233 (432)
Q Consensus 194 ~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~ 233 (432)
.+.+++..++..++++-+.|+++|+|++.+++++.+....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 4445566678889999999999999999999999987754
No 369
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=50.87 E-value=4.7 Score=29.20 Aligned_cols=24 Identities=25% Similarity=0.701 Sum_probs=20.4
Q ss_pred ceeeeee-ecCccCC-CCCccccccC
Q 014003 58 KVLCVYF-LEGRCNR-NPCRFAHTES 81 (432)
Q Consensus 58 ~~~~~~~-~~~~~~~-~p~~~l~~~~ 81 (432)
..+|.+| ..|.|.+ ..|+|.|...
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 4689999 6999998 8999999743
No 370
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=41.85 E-value=2.3e+02 Score=26.68 Aligned_cols=191 Identities=15% Similarity=0.123 Sum_probs=109.6
Q ss_pred CcEEEEEecCCCCEEEEEeCCCcEEEEeCC---CCc----------e--eEEEeC--CCceeeEEECCC-EEEEEcCCeE
Q 014003 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCH---TGQ----------S--ASVINL--GAEVGSLICEGP-WVFVGMPNVV 254 (432)
Q Consensus 193 ~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~---~~~----------~--~~~~~~--~~~~~~~~~~~~-~l~~~~~~~i 254 (432)
..|..|+.. ....+.-..||.|..|-.. .++ . ...+.. ...+..+.+... .++...+|.|
T Consensus 148 ~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v 225 (473)
T 3of7_A 148 HKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMV 225 (473)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCE
T ss_pred CcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeE
Confidence 456666643 3445555678888888741 111 0 111111 123666666544 4455688999
Q ss_pred EEEEccCCceE--------------eecCCcCCEEEEEEcCCEEEEEECCCcEEEEECCCCCCCc-----------cccc
Q 014003 255 KAWHIESSAEF--------------SLDGPVGEVYSMVVANEMLFAGAQDGNILVWKGIPNTQNP-----------FQLA 309 (432)
Q Consensus 255 ~vwd~~~~~~~--------------~~~~~~~~v~~l~~~~~~l~~g~~dg~i~~wd~~~~~~~~-----------~~~~ 309 (432)
..|-......+ ...-....|..++......++-..+|.|+.|-.....+.. ..+.
T Consensus 226 ~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~ 305 (473)
T 3of7_A 226 FAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPK 305 (473)
T ss_dssp EEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEE
T ss_pred EEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccc
Confidence 99965432111 0001124678888887777778899999999754321100 0011
Q ss_pred eeeeccccCeEEEEEeCCEEEEEeCCCeEEEEECCCC-c-------------------e-----EEEecCCCCCcEEEEE
Q 014003 310 ALLKGHTRPVTCLAVGGKRLYSGSMDNTIRVWDLDTL-E-------------------A-----VMTLNGHTDAPMSLLC 364 (432)
Q Consensus 310 ~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~vwd~~~~-~-------------------~-----~~~~~~~~~~v~~~~~ 364 (432)
.........|..++......+.-..||.|+.|=.... + . ...+. ....|..+++
T Consensus 306 ~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~-~~~~v~~Ia~ 384 (473)
T 3of7_A 306 RLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLN-NVPKFKSVAA 384 (473)
T ss_dssp ECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECC-SSCCEEEEEE
T ss_pred cccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccC-CCCceEEEEe
Confidence 1111122457777777777777788999999975321 1 1 01111 1125777777
Q ss_pred cCCEEEEEeCCCcEEEEEcCCC
Q 014003 365 WDQYLLSCSLDNTIKVWIMTEE 386 (432)
Q Consensus 365 ~~~~l~s~s~dg~i~iwd~~~~ 386 (432)
-....++-..||.|..|=....
T Consensus 385 G~~hs~al~~~G~vy~wG~n~~ 406 (473)
T 3of7_A 385 GSHHSVAVAQNGIAYSWGFGET 406 (473)
T ss_dssp CSSEEEEEETTSCEEEEECCTT
T ss_pred CCCeEEEEeCCCcEEEeeCCCC
Confidence 7777778889999999976543
No 371
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=40.48 E-value=6.2 Score=33.92 Aligned_cols=24 Identities=25% Similarity=0.771 Sum_probs=20.8
Q ss_pred ceeeeeeecCccCC-CCCccccccC
Q 014003 58 KVLCVYFLEGRCNR-NPCRFAHTES 81 (432)
Q Consensus 58 ~~~~~~~~~~~~~~-~p~~~l~~~~ 81 (432)
..+|.||-.|.|.+ .-|+|+|..+
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~lP 94 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHIP 94 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSCC
T ss_pred CeEcCccccCCCCCCCCCCccCCCC
Confidence 36999999999999 7799999653
No 372
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=35.62 E-value=2.5e+02 Score=25.44 Aligned_cols=180 Identities=14% Similarity=0.167 Sum_probs=90.9
Q ss_pred CEEEEEeCCCcEEEEeCCC-C-------ceeEEEe-C----CCceeeEEECCC-EEEEEcCCeEEEEEccCCc-------
Q 014003 205 DKLYSGSRDGTVQLWDCHT-G-------QSASVIN-L----GAEVGSLICEGP-WVFVGMPNVVKAWHIESSA------- 263 (432)
Q Consensus 205 ~~l~s~s~Dg~v~iWd~~~-~-------~~~~~~~-~----~~~~~~~~~~~~-~l~~~~~~~i~vwd~~~~~------- 263 (432)
..++.-..||+|..|=.+. + ....... . ...+..+.+... .++...++.|..|-.....
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~ 90 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGT 90 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSS
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCc
Confidence 4455556677777775432 1 1111111 1 123444554444 4556789999999643211
Q ss_pred --eE---eecC-CcCCEEEEEE--cCCEEEEEECCCcEEEEECCCCCC------Cccccceeeec-cccCeEEEEEeCCE
Q 014003 264 --EF---SLDG-PVGEVYSMVV--ANEMLFAGAQDGNILVWKGIPNTQ------NPFQLAALLKG-HTRPVTCLAVGGKR 328 (432)
Q Consensus 264 --~~---~~~~-~~~~v~~l~~--~~~~l~~g~~dg~i~~wd~~~~~~------~~~~~~~~~~~-h~~~v~~l~~~~~~ 328 (432)
.. .... ....+..+.+ ..+..++-..||.|+.|-.....+ ........+.. ....|..++....+
T Consensus 91 ~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~h 170 (389)
T 3kci_A 91 ESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAH 170 (389)
T ss_dssp CCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSE
T ss_pred CCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCe
Confidence 00 1111 1123333444 344777778999999996543211 00001111111 22367778777788
Q ss_pred EEEEeCCCeEEEEECCCC-c----------eEEEecC-CCCCcEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 014003 329 LYSGSMDNTIRVWDLDTL-E----------AVMTLNG-HTDAPMSLLCW--DQYLLSCSLDNTIKVWIMT 384 (432)
Q Consensus 329 l~sgs~dg~I~vwd~~~~-~----------~~~~~~~-~~~~v~~~~~~--~~~l~s~s~dg~i~iwd~~ 384 (432)
.+.-..||.|+.|-.... + ....+.. ....+..+++- ..+.+.-..||.|..|-..
T Consensus 171 s~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 171 SACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp EEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECC
T ss_pred EEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCC
Confidence 888889999999975421 1 1111111 22346667665 3677778899999999654
No 373
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=34.67 E-value=16 Score=26.12 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=30.6
Q ss_pred eeceeceeeccccccccccCCCCCcccccccCCCCCcCceeeeeeecCc
Q 014003 20 YSMEVKASRRFTYQRERSLFNPVNERAGGRVGGGWPTKKVLCVYFLEGR 68 (432)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (432)
-..+-..=||+...|+.| ||+|+..+ .+||..++..-
T Consensus 23 C~ee~l~CPITL~~PE~G--------VFvkNs~~----S~VCsLyD~~A 59 (102)
T 2kkx_A 23 CPLEAIQCPITLEQPEKG--------IFVKNSDG----SDVCTLFDAAA 59 (102)
T ss_dssp CCTGGGCBTTTTBCCSEE--------EEEEETTT----TSEEEEEEHHH
T ss_pred CCHHHcCCCeEEeeCCcc--------eEEecCCC----CccceecCHHH
Confidence 356677889999999999 99999777 78898888743
No 374
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.02 E-value=14 Score=24.65 Aligned_cols=24 Identities=33% Similarity=0.874 Sum_probs=21.0
Q ss_pred CceeeeeeecCccCC-CCCcccccc
Q 014003 57 KKVLCVYFLEGRCNR-NPCRFAHTE 80 (432)
Q Consensus 57 ~~~~~~~~~~~~~~~-~p~~~l~~~ 80 (432)
+-..|.+|..|.|.. .-|.|-|.+
T Consensus 19 k~~LC~~~~~G~C~~G~~C~FAHG~ 43 (69)
T 2d9m_A 19 YFSICDRYMNGTCPEGNSCKFAHGN 43 (69)
T ss_dssp CCSBCHHHHHSCCSSCSSCSSBSSH
T ss_pred CcccCcccCcCCCCCCCccCCcCCH
Confidence 558999999999998 799999964
No 375
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=28.73 E-value=3.1e+02 Score=24.41 Aligned_cols=30 Identities=13% Similarity=0.249 Sum_probs=22.8
Q ss_pred CcEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 014003 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCH 222 (432)
Q Consensus 193 ~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~ 222 (432)
.....|+|.|+|+.|+.+...|.|++++..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence 456799999999834445567999999853
No 376
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=28.14 E-value=3.7e+02 Score=25.08 Aligned_cols=34 Identities=6% Similarity=0.048 Sum_probs=24.8
Q ss_pred CcEEEEEecCCCCEEEEEeCCCcEEEEeCCCCce
Q 014003 193 KAVSGIALPLRSDKLYSGSRDGTVQLWDCHTGQS 226 (432)
Q Consensus 193 ~~V~~l~~~~~~~~l~s~s~Dg~v~iWd~~~~~~ 226 (432)
....+|+|.|+|+++++-...+.|++++..+++.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~ 60 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV 60 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE
Confidence 4567999999999777755445788887665543
No 377
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=22.89 E-value=3.8e+02 Score=23.35 Aligned_cols=175 Identities=6% Similarity=0.075 Sum_probs=93.9
Q ss_pred EecCCCCEEEEEeCC--------------CcEEEEeCCCCceeEEEeCCCceeeEEECCCEEEEEc-----CCeEEEEEc
Q 014003 199 ALPLRSDKLYSGSRD--------------GTVQLWDCHTGQSASVINLGAEVGSLICEGPWVFVGM-----PNVVKAWHI 259 (432)
Q Consensus 199 ~~~~~~~~l~s~s~D--------------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~i~vwd~ 259 (432)
-+++++++|+-+... ..|+..+++.++...... .....+..++..|+-.. ...|...++
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~--~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~ 136 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP--DPCIYASLIGNYIYYLHYDTQTATSLYRIRI 136 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC--SCEEEEEEETTEEEEEEESSSSCEEEEEEET
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec--CCccEEEEeCCEEEEEeecCCCCceEEEEEC
Confidence 346788887766543 467777887665433332 22335556666666433 345666676
Q ss_pred cCCceEeecCCcCCEEEEEEcCCEEEEEE-CCCcEEEEECCCCCCCccccceeeeccccCeEEEEEeCCEEEEEeCC--C
Q 014003 260 ESSAEFSLDGPVGEVYSMVVANEMLFAGA-QDGNILVWKGIPNTQNPFQLAALLKGHTRPVTCLAVGGKRLYSGSMD--N 336 (432)
Q Consensus 260 ~~~~~~~~~~~~~~v~~l~~~~~~l~~g~-~dg~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~d--g 336 (432)
.......+..+.. ..+.+....|+-.+ ....|...++..+.. + ....+. .. ..+...+.+|+-...+ .
T Consensus 137 dGs~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~---~--~l~~~~-~~-~~~~P~g~~iy~t~~~~~~ 207 (302)
T 3s25_A 137 DGEEKKKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSE---A--LFYDCN-CY-KPVVLDDTNVYYMDVNRDN 207 (302)
T ss_dssp TSCCCEEEESSCC--CCSEEETTEEEEECTTTCCEEEEETTTTEE---E--EEECSC-EE-EEEEEETTEEEEEEGGGTT
T ss_pred CCCCeEEEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCCCCE---E--EEeCCC-cc-ceeeecCCEEEEEEcCCCc
Confidence 6554444433322 33456666444444 467888888766532 1 112221 11 1233457776655433 3
Q ss_pred eEEEEECCCCceEEEecCCCCCcEEEEEcCCEEEEEeC--CCcEEEEEcCCCC
Q 014003 337 TIRVWDLDTLEAVMTLNGHTDAPMSLLCWDQYLLSCSL--DNTIKVWIMTEEG 387 (432)
Q Consensus 337 ~I~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~--dg~i~iwd~~~~~ 387 (432)
.|..-++.... ...+. ...+..+.+.++.|.-++. .+.|..-++....
T Consensus 208 ~I~~~~ldG~~-~~~Lt--~~~~~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 208 AIVHVNINNPN-PVVLT--EANIEHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp EEEEECSSSCC-CEECS--CSCEEEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred EEEEEECCCCC-eEEEe--CCCcceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 67777776544 34443 2234557777887776532 3556666665443
No 378
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=20.01 E-value=1.3e+02 Score=29.50 Aligned_cols=50 Identities=6% Similarity=0.005 Sum_probs=33.4
Q ss_pred cEEEEEcCC----CCceeEEe-eccCCcceEEEeeeeCCCCCcEEEEEeCCCeEEEeeCC
Q 014003 377 TIKVWIMTE----EGNLEVAY-THNEDHGVLALGGLNDPDGNPVLICSCNDDSVHLYELP 431 (432)
Q Consensus 377 ~i~iwd~~~----~~~~~~~~-~~~~~~~~~~~~~~~sp~g~~~l~sg~~Dg~I~iwdl~ 431 (432)
.+.+.|.+. ...+..+. ..+.+ ..+.+ +|||++++++|-.+.++.++|++
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksP-HGv~v----sPDGkyi~v~GKLsptvtV~d~~ 353 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNP-HGCNT----SSDGKYFIAAGKLSPTCSMIAID 353 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSC-CCEEE----CTTSCEEEEECTTSSBEEEEEGG
T ss_pred CeeEEccccccccCCceEEEEeCCCCC-cceee----CCCCCEEEEcCCCCCeEEEEEee
Confidence 477888776 33332222 33333 34445 79999888888899999999875
Done!