Query 014004
Match_columns 432
No_of_seqs 133 out of 156
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 00:54:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 1E-121 3E-126 890.9 20.6 278 70-353 4-286 (294)
2 cd04185 GT_2_like_b Subfamily 94.3 0.15 3.3E-06 44.7 6.8 100 183-327 78-177 (202)
3 cd04186 GT_2_like_c Subfamily 93.8 0.17 3.6E-06 41.9 5.8 92 183-323 73-165 (166)
4 TIGR01556 rhamnosyltran L-rham 93.7 0.29 6.4E-06 46.0 7.9 127 183-323 72-201 (281)
5 cd02510 pp-GalNAc-T pp-GalNAc- 91.7 1.5 3.3E-05 41.9 9.9 144 183-329 82-232 (299)
6 cd02526 GT2_RfbF_like RfbF is 89.0 0.87 1.9E-05 40.7 5.5 126 184-323 75-204 (237)
7 cd02525 Succinoglycan_BP_ExoA 87.0 2.5 5.3E-05 37.7 7.1 126 183-323 80-208 (249)
8 cd02520 Glucosylceramide_synth 84.7 1.1 2.4E-05 39.8 3.7 92 183-323 85-176 (196)
9 PF13641 Glyco_tranf_2_3: Glyc 81.6 2.2 4.7E-05 38.1 4.3 126 183-323 85-210 (228)
10 cd06421 CESA_CelA_like CESA_Ce 80.3 1.3 2.8E-05 39.4 2.3 125 183-324 83-212 (234)
11 cd06442 DPM1_like DPM1_like re 79.7 2.2 4.7E-05 37.8 3.6 36 183-218 77-112 (224)
12 COG1216 Predicted glycosyltran 79.1 9.9 0.00021 37.0 8.2 136 185-327 85-224 (305)
13 cd04195 GT2_AmsE_like GT2_AmsE 77.4 1.5 3.3E-05 38.2 1.9 39 183-221 79-118 (201)
14 PLN02726 dolichyl-phosphate be 73.1 8.1 0.00018 35.7 5.6 38 183-220 92-129 (243)
15 cd06433 GT_2_WfgS_like WfgS an 69.7 8 0.00017 32.9 4.5 38 183-220 74-112 (202)
16 cd06437 CESA_CaSu_A2 Cellulose 67.0 5.9 0.00013 35.9 3.3 129 183-324 86-214 (232)
17 cd06434 GT2_HAS Hyaluronan syn 61.4 4.5 9.8E-05 36.2 1.4 41 183-223 76-116 (235)
18 PF00535 Glycos_transf_2: Glyc 61.0 6.5 0.00014 31.9 2.2 38 183-220 77-114 (169)
19 cd06913 beta3GnTL1_like Beta 1 59.0 25 0.00054 31.5 5.8 124 183-325 83-211 (219)
20 cd04188 DPG_synthase DPG_synth 58.8 6.3 0.00014 35.1 1.9 37 183-219 81-117 (211)
21 PF01762 Galactosyl_T: Galacto 55.9 57 0.0012 29.7 7.6 177 92-306 6-186 (195)
22 PF13632 Glyco_trans_2_3: Glyc 53.4 20 0.00043 31.5 4.1 124 187-327 1-127 (193)
23 cd06435 CESA_NdvC_like NdvC_li 52.6 8.1 0.00017 34.8 1.6 124 184-321 84-207 (236)
24 PTZ00260 dolichyl-phosphate be 47.4 33 0.00071 34.5 5.1 191 107-317 69-286 (333)
25 PF13506 Glyco_transf_21: Glyc 40.6 19 0.00041 33.0 2.0 125 183-326 30-156 (175)
26 PF10111 Glyco_tranf_2_2: Glyc 39.8 43 0.00092 32.4 4.4 95 112-207 2-111 (281)
27 cd00761 Glyco_tranf_GTA_type G 39.6 25 0.00054 27.6 2.3 36 184-219 77-113 (156)
28 cd06423 CESA_like CESA_like is 37.6 20 0.00044 28.8 1.6 39 183-221 77-116 (180)
29 cd04187 DPM1_like_bac Bacteria 36.4 48 0.001 28.6 3.8 35 183-218 79-113 (181)
30 cd04184 GT2_RfbC_Mx_like Myxoc 36.3 28 0.0006 30.3 2.3 37 183-219 82-119 (202)
31 PF07976 Phe_hydrox_dim: Pheno 35.2 43 0.00092 30.9 3.4 71 77-157 34-125 (169)
32 cd04190 Chitin_synth_C C-termi 34.2 54 0.0012 30.6 4.0 30 182-211 71-100 (244)
33 KOG2264 Exostosin EXT1L [Signa 33.7 48 0.001 37.5 4.0 97 116-213 631-753 (907)
34 cd04192 GT_2_like_e Subfamily 33.0 33 0.00072 30.1 2.3 38 183-220 81-118 (229)
35 cd04196 GT_2_like_d Subfamily 31.1 41 0.00089 29.2 2.5 46 273-323 158-203 (214)
36 cd06439 CESA_like_1 CESA_like_ 29.7 30 0.00066 31.4 1.5 40 183-222 108-147 (251)
37 cd02522 GT_2_like_a GT_2_like_ 29.3 38 0.00082 29.9 2.0 41 183-223 71-111 (221)
38 PF09828 Chrome_Resist: Chroma 29.2 36 0.00077 31.5 1.9 55 170-231 15-87 (135)
39 cd06427 CESA_like_2 CESA_like_ 29.2 50 0.0011 30.4 2.8 38 183-220 83-122 (241)
40 TIGR03469 HonB hopene-associat 28.4 54 0.0012 33.3 3.1 33 185-217 134-166 (384)
41 PF12996 DUF3880: DUF based on 28.1 28 0.00062 28.2 0.9 25 179-213 13-37 (79)
42 cd06420 GT2_Chondriotin_Pol_N 25.3 47 0.001 28.3 1.8 27 183-209 78-104 (182)
43 PF09451 ATG27: Autophagy-rela 23.9 65 0.0014 31.8 2.7 26 18-43 201-226 (268)
44 PF09258 Glyco_transf_64: Glyc 23.4 1.1E+02 0.0023 30.0 4.1 95 117-212 8-103 (247)
45 PF12621 DUF3779: Phosphate me 23.3 43 0.00093 28.5 1.2 44 173-220 33-76 (95)
46 KOG2287 Galactosyltransferases 21.7 1.1E+02 0.0024 31.4 4.0 187 82-306 100-292 (349)
47 TIGR02165 cas_GSU0054 CRISPR-a 21.5 17 0.00037 38.4 -1.8 34 257-302 74-107 (465)
48 cd06430 GT8_like_2 GT8_like_2 20.6 2.5E+02 0.0054 28.9 6.2 102 110-213 2-124 (304)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=1.4e-121 Score=890.87 Aligned_cols=278 Identities=63% Similarity=1.121 Sum_probs=268.1
Q ss_pred cCCCCCCCCCCCCccccCCCcceecCCCCCCCCCCCCCCCcEEEEEeccccccchhHHhhcCCCCCcEEEEEEecCccCc
Q 014004 70 QCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDE 149 (432)
Q Consensus 70 q~~p~g~e~LP~gIv~~~Sdl~lr~Lwg~p~~~~~~~~~k~Lla~~VG~kqk~~Vd~~VkKf~~~nFdvmLFHYDG~vd~ 149 (432)
||+|+|+|+||+|||+++||||||||||.|+++. +.++|||||||||+|||++||++|+|| ++|||||||||||+||+
T Consensus 4 ~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~-~~~~k~Lla~~VG~kqk~~vd~~v~Kf-~~nF~i~LfhYDg~vd~ 81 (294)
T PF05212_consen 4 PCNPRGAERLPPGIVVRESDLELRPLWGNPSEDL-PKKPKYLLAMTVGIKQKDNVDAIVKKF-SDNFDIMLFHYDGRVDE 81 (294)
T ss_pred CCCCCccccCCCCccccCCCceeeecCCCccccc-cCCCceEEEEEecHHHHhhhhHHHhhh-ccCceEEEEEecCCcCc
Confidence 8999999999999999999999999999999885 668899999999999999999999999 89999999999999999
Q ss_pred cccccccCceeEEEeecccchhhhccccCccccccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCccc
Q 014004 150 WKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVH 229 (432)
Q Consensus 150 W~d~eWs~~aiHVsa~kQtKWwfaKRFLHPDiVa~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~is 229 (432)
|+|||||++||||++.|||||||||||||||+|++|||||||||||+||+|+|+|||+||++|||||||||||++++++|
T Consensus 82 w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~~ 161 (294)
T PF05212_consen 82 WDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEIH 161 (294)
T ss_pred hhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred ccccccccCcccceeeecccCCCCCCCCCCCCCccceEEeecccccHHHHHHhhhhhcCCCcccchhhhhhhhhhcCCCC
Q 014004 230 HPITARRRNSKAHRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRT 309 (432)
Q Consensus 230 H~iT~R~~~~~vHrr~~~~~g~~~C~~~~~~ppcTgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWGLDf~w~~caqg~~~ 309 (432)
|+||+|++.++|||. .++.+.|.+++++||||||||||||||||+|||||||||||||+|||||||+|+||+ ++++
T Consensus 162 ~~iT~R~~~~~vhr~---~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~-~~~~ 237 (294)
T PF05212_consen 162 HPITKRRPDSEVHRK---TRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCA-GDRH 237 (294)
T ss_pred eeEEeecCCceeEec---cCCCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHh-cccc
Confidence 999999999999984 577788888999999999999999999999999999999999999999999999999 6899
Q ss_pred CcEEEEeeeeEEEeccccCCCCCCcccc-----cccccchhHHHhcCcC
Q 014004 310 KNVGVVDSEYIVHLGLPTLGVTTEPELN-----TVGQASDDLEQIANPV 353 (432)
Q Consensus 310 ~kIGVVDa~~VvH~g~PtLGg~g~~~~~-----~~~~~s~~~~~~~~~~ 353 (432)
+||||||||||+|+|+|||||||.+++. .||++|+.|+++|+-+
T Consensus 238 ~kiGVVDs~~VvH~gvptLG~~~~~~~~~~~~~~Vr~r~~~E~~~F~~R 286 (294)
T PF05212_consen 238 KKIGVVDSQYVVHTGVPTLGGQGNSEKGKDPREEVRRRSFAEMRIFQKR 286 (294)
T ss_pred ccEEEEeeEEEEEcCCCcCCCccccccCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887554 6999999999999865
No 2
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.28 E-value=0.15 Score=44.74 Aligned_cols=100 Identities=17% Similarity=0.249 Sum_probs=67.1
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCCCCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 262 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~isH~iT~R~~~~~vHrr~~~~~g~~~C~~~~~~pp 262 (432)
+.+|||++.|+|..++..-++++.+.+++.+..+..|..-...+ +
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-----------------------------------~ 122 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG-----------------------------------S 122 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC-----------------------------------c
Confidence 68999999999999998888888887775555444443221100 1
Q ss_pred ccceEEeecccccHHHHHHhhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEecccc
Q 014004 263 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPT 327 (432)
Q Consensus 263 cTgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWGLDf~w~~caqg~~~~kIGVVDa~~VvH~g~Pt 327 (432)
+.++ +++|++|+.+ . .+.+.-..||=|.-+.+-+. ..+.++ .+.+..+.|....+
T Consensus 123 ~~~~------~~~~~~~~~~-g-~~~~~~~~~~eD~~~~~r~~-~~G~~i-~~~~~~~~h~~~~~ 177 (202)
T cd04185 123 FVGV------LISRRVVEKI-G-LPDKEFFIWGDDTEYTLRAS-KAGPGI-YVPDAVVVHKTAIN 177 (202)
T ss_pred eEEE------EEeHHHHHHh-C-CCChhhhccchHHHHHHHHH-HcCCcE-EecceEEEEccccc
Confidence 1121 4889999876 2 24455567888887765543 245789 99999999994433
No 3
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.77 E-value=0.17 Score=41.88 Aligned_cols=92 Identities=20% Similarity=0.135 Sum_probs=61.9
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHh-CCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCCCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE-GLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAP 261 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~-gLeISQPALd~~s~~isH~iT~R~~~~~vHrr~~~~~g~~~C~~~~~~p 261 (432)
+.+|||++.|+|...+...+.++.+.+.+. +..+..+.
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------------------------------- 111 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK----------------------------------------- 111 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-----------------------------------------
Confidence 389999999999999888788887754432 22222222
Q ss_pred CccceEEeecccccHHHHHHhhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEe
Q 014004 262 PCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHL 323 (432)
Q Consensus 262 pcTgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWGLDf~w~~caqg~~~~kIGVVDa~~VvH~ 323 (432)
+=.-+.+|++++|+.+= .+++....+|-|..+...+. ..+.+|..+....+.|.
T Consensus 112 -----~~~~~~~~~~~~~~~~~--~~~~~~~~~~eD~~~~~~~~-~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 112 -----VSGAFLLVRREVFEEVG--GFDEDFFLYYEDVDLCLRAR-LAGYRVLYVPQAVIYHH 165 (166)
T ss_pred -----CceeeEeeeHHHHHHcC--CCChhhhccccHHHHHHHHH-HcCCeEEEccceEEEec
Confidence 00124588999998762 23443334777887765553 24579999999999997
No 4
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=93.66 E-value=0.29 Score=46.00 Aligned_cols=127 Identities=15% Similarity=0.077 Sum_probs=73.2
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHh--CCcccCCCC-CCCCCcccccccccccCcccceeeecccCCCCCCCCCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE--GLEISQPAL-DPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYST 259 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~--gLeISQPAL-d~~s~~isH~iT~R~~~~~vHrr~~~~~g~~~C~~~~~ 259 (432)
+.+|||++.|+|..++...++++++.+++. +.-+..|.. +.+.. ...+...... ... +.. ... ..+
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~-~~~-------~~~-~~~ 140 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTS-RRLPAIHLDG-LLL-RQI-------SLD-GLT 140 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCc-ccCCceeecc-cce-eee-------ccc-ccC
Confidence 479999999999999998999999988876 567777764 33221 1112111111 100 000 000 001
Q ss_pred CCCccceEEeecccccHHHHHHhhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEe
Q 014004 260 APPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHL 323 (432)
Q Consensus 260 ~ppcTgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWGLDf~w~~caqg~~~~kIGVVDa~~VvH~ 323 (432)
.+.-+.++=.-..+++|++++.+= + +++..-.++.|.-|..-+. ..+.+|.++....+.|.
T Consensus 141 ~~~~~~~~~~sg~li~~~~~~~iG-~-fde~~fi~~~D~e~~~R~~-~~G~~i~~~~~~~~~H~ 201 (281)
T TIGR01556 141 TPQKTSFLISSGCLITREVYQRLG-M-MDEELFIDHVDTEWSLRAQ-NYGIPLYIDPDIVLEHR 201 (281)
T ss_pred CceeccEEEcCcceeeHHHHHHhC-C-ccHhhcccchHHHHHHHHH-HCCCEEEEeCCEEEEEe
Confidence 111111110012368999999873 3 3444345678887754443 24578999999999998
No 5
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=91.68 E-value=1.5 Score=41.86 Aligned_cols=144 Identities=13% Similarity=0.081 Sum_probs=78.2
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCC-ccccccccc-cc---CcccceeeecccCCCCCCCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKS-EVHHPITAR-RR---NSKAHRRMYKYKGSGRCDDY 257 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~s~-~isH~iT~R-~~---~~~vHrr~~~~~g~~~C~~~ 257 (432)
+..|||++.|+|..++..-++++++.+.+..-.+.-|.+..-.+ .+.+.-... .. ...++...........+...
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRES 161 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcC
Confidence 78999999999999999999999999998887777787653211 122221111 00 00001000000000000111
Q ss_pred CCCCCccceEEeecccccHHHHHHhhhhhcCCCcccch-hhhhhhhhhcCCCCCcEEEEeeeeEEEecc-ccCC
Q 014004 258 STAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWG-LDIQLGYCAQGDRTKNVGVVDSEYIVHLGL-PTLG 329 (432)
Q Consensus 258 ~~~ppcTgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWG-LDf~w~~caqg~~~~kIGVVDa~~VvH~g~-PtLG 329 (432)
+..|..+.++-.-+=+++|++|..+= -+......|| =|.-+..-+. ..+.+|-++-...|.|... +..+
T Consensus 162 ~~~~~~~~~~~g~~~~irr~~~~~vG--gfDe~~~~~~~ED~Dl~~R~~-~~G~~i~~~p~a~v~H~~~~~~~~ 232 (299)
T cd02510 162 PTAPIRSPTMAGGLFAIDREWFLELG--GYDEGMDIWGGENLELSFKVW-QCGGSIEIVPCSRVGHIFRRKRKP 232 (299)
T ss_pred CCCCccCccccceeeEEEHHHHHHhC--CCCCcccccCchhHHHHHHHH-HcCCeEEEeeccEEEEeccccCCC
Confidence 11222233333334468899998873 2344456666 3444422221 1346899998888899866 4433
No 6
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=89.00 E-value=0.87 Score=40.74 Aligned_cols=126 Identities=14% Similarity=0.133 Sum_probs=62.0
Q ss_pred cccEEEEecccccCCCCCHHHHH---HHHH-HhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCC
Q 014004 184 EYNYIFLWDEDIGVENFNPRRYL---SIVK-DEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYST 259 (432)
Q Consensus 184 ~YDYIFLwDDDL~Vd~f~i~ryf---~Ivr-~~gLeISQPALd~~s~~isH~iT~R~~~~~vHrr~~~~~g~~~C~~~~~ 259 (432)
.||||++.|+|..++...+++++ +... ...+.+..|.............. +.....+ .. .. +.. .
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~--~~----~~~--~ 143 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGV-RKSGYKL--RI--QK----EGE--E 143 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccce-eccCccc--ee--cc----ccc--C
Confidence 68999999999999988888885 2222 22444555544322111111110 0000000 00 00 000 0
Q ss_pred CCCccceEEeecccccHHHHHHhhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEe
Q 014004 260 APPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHL 323 (432)
Q Consensus 260 ~ppcTgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWGLDf~w~~caqg~~~~kIGVVDa~~VvH~ 323 (432)
..+-..++=.-.-+|+|++++.+=. +.+.....|-|..|...+. ..+.++..+....|.|.
T Consensus 144 ~~~~~~~~~~~~~~~rr~~~~~~gg--fd~~~~~~~eD~d~~~r~~-~~G~~~~~~~~~~v~h~ 204 (237)
T cd02526 144 GLKEVDFLITSGSLISLEALEKVGG--FDEDLFIDYVDTEWCLRAR-SKGYKIYVVPDAVLKHE 204 (237)
T ss_pred CceEeeeeeccceEEcHHHHHHhCC--CCHHHcCccchHHHHHHHH-HcCCcEEEEcCeEEEec
Confidence 0000001101112579999988732 2222223355666654443 24568999988888887
No 7
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=87.01 E-value=2.5 Score=37.72 Aligned_cols=126 Identities=9% Similarity=-0.009 Sum_probs=68.1
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCC-C-
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYST-A- 260 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~isH~iT~R~~~~~vHrr~~~~~g~~~C~~~~~-~- 260 (432)
+.+|||.+.|+|..++...++++++..++.+..+.+................+.....+. ............ .
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 154 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLG-----SGGSAYRGGAVKIGY 154 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhc-----cCCcccccccccccc
Confidence 479999999999999998899999888888877766554321110111000000000000 000000000000 0
Q ss_pred CCccceEEeecccccHHHHHHhhhhhcCCCcccchhhhhhh-hhhcCCCCCcEEEEeeeeEEEe
Q 014004 261 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLG-YCAQGDRTKNVGVVDSEYIVHL 323 (432)
Q Consensus 261 ppcTgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWGLDf~w~-~caqg~~~~kIGVVDa~~VvH~ 323 (432)
....++ + +|+|++|+.+= . ++. ....|-|+.+. ++.+ .+.++..+....+.|.
T Consensus 155 ~~~~~~---~--~~~~~~~~~~g-~-~~~-~~~~~eD~~l~~r~~~--~G~~~~~~~~~~~~~~ 208 (249)
T cd02525 155 VDTVHH---G--AYRREVFEKVG-G-FDE-SLVRNEDAELNYRLRK--AGYKIWLSPDIRVYYY 208 (249)
T ss_pred cccccc---c--eEEHHHHHHhC-C-CCc-ccCccchhHHHHHHHH--cCcEEEEcCCeEEEEc
Confidence 001111 1 57899998763 2 222 23346777775 3433 4578999998888887
No 8
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=84.70 E-value=1.1 Score=39.83 Aligned_cols=92 Identities=17% Similarity=0.158 Sum_probs=54.8
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCCCCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 262 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~isH~iT~R~~~~~vHrr~~~~~g~~~C~~~~~~pp 262 (432)
+.+|||++.|.|..++...+.++++... +|..+--.+. |
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~-------~~~~~~v~~~--------------------------~-------- 123 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLM-------DPGVGLVTCL--------------------------C-------- 123 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhh-------CCCCCeEEee--------------------------c--------
Confidence 6799999999999887777777665542 2322111110 0
Q ss_pred ccceEEeecccccHHHHHHhhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEe
Q 014004 263 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHL 323 (432)
Q Consensus 263 cTgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWGLDf~w~~caqg~~~~kIGVVDa~~VvH~ 323 (432)
++ ..+=+|+|++|+.+=.+ .....-++=|+.+...+.. .+.+|.+++.. ++|.
T Consensus 124 ~~----g~~~~~r~~~~~~~ggf--~~~~~~~~eD~~l~~rl~~-~G~~i~~~~~~-~~~~ 176 (196)
T cd02520 124 AF----GKSMALRREVLDAIGGF--EAFADYLAEDYFLGKLIWR-LGYRVVLSPYV-VMQP 176 (196)
T ss_pred cc----CceeeeEHHHHHhccCh--HHHhHHHHHHHHHHHHHHH-cCCeEEEcchh-eecc
Confidence 00 12347889999876322 2212234678888766643 46789888775 4554
No 9
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=81.55 E-value=2.2 Score=38.11 Aligned_cols=126 Identities=17% Similarity=0.072 Sum_probs=62.5
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCCCCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 262 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~isH~iT~R~~~~~vHrr~~~~~g~~~C~~~~~~pp 262 (432)
..+|||++.|+|..++...+.++++.+...+..+.++........ ..++.-......+.. ..... ....-..+.
T Consensus 85 ~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~ 158 (228)
T PF13641_consen 85 ARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDR--NWLTRLQDLFFARWH--LRFRS--GRRALGVAF 158 (228)
T ss_dssp ---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCC--CEEEE-TT--S-EET--TTS-T--T-B----S-
T ss_pred cCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCC--CHHHHHHHHHHhhhh--hhhhh--hhcccceee
Confidence 569999999999999999999999999778888888665332211 111111110000000 00000 000001111
Q ss_pred ccceEEeecccccHHHHHHhhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEe
Q 014004 263 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHL 323 (432)
Q Consensus 263 cTgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWGLDf~w~~caqg~~~~kIGVVDa~~VvH~ 323 (432)
++| -+=+|+|++++.+-. ++. ..-|=|+.+...+.. .+.++.......|.|.
T Consensus 159 ~~G----~~~~~rr~~~~~~g~--fd~--~~~~eD~~l~~r~~~-~G~~~~~~~~~~v~~~ 210 (228)
T PF13641_consen 159 LSG----SGMLFRRSALEEVGG--FDP--FILGEDFDLCLRLRA-AGWRIVYAPDALVYHE 210 (228)
T ss_dssp B------TEEEEEHHHHHHH-S----S--SSSSHHHHHHHHHHH-TT--EEEEEEEEEEE-
T ss_pred ccC----cEEEEEHHHHHHhCC--CCC--CCcccHHHHHHHHHH-CCCcEEEECCcEEEEe
Confidence 222 123689999998852 334 445578888644432 4679999988888888
No 10
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=80.25 E-value=1.3 Score=39.39 Aligned_cols=125 Identities=13% Similarity=0.005 Sum_probs=71.8
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHH-hCCcccCCCCC--CCCCcccccccccccC--cccceeeecccCCCCCCCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKD-EGLEISQPALD--PVKSEVHHPITARRRN--SKAHRRMYKYKGSGRCDDY 257 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~-~gLeISQPALd--~~s~~isH~iT~R~~~--~~vHrr~~~~~g~~~C~~~ 257 (432)
+.+|||++.|+|..++...+.++++.+.+ .++.+.++... .... .. .++..... ..+.+.... +...+
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~--~~~~~--- 155 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDP-FD-WLADGAPNEQELFYGVIQP--GRDRW--- 155 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCc-ch-hHHHHHHHHHHHHHHHHHH--HHhhc---
Confidence 58999999999999999999999999987 77777776521 1111 10 01110000 000000000 00000
Q ss_pred CCCCCccceEEeecccccHHHHHHhhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEec
Q 014004 258 STAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 324 (432)
Q Consensus 258 ~~~ppcTgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWGLDf~w~~caqg~~~~kIGVVDa~~VvH~g 324 (432)
++ .++=.+.=+|+|++++.+-.+ ++ ...+-|+.+..-+. ..+.+|..++...+.|..
T Consensus 156 ----~~-~~~~g~~~~~r~~~~~~ig~~--~~--~~~~eD~~l~~r~~-~~g~~i~~~~~~~~~~~~ 212 (234)
T cd06421 156 ----GA-AFCCGSGAVVRREALDEIGGF--PT--DSVTEDLATSLRLH-AKGWRSVYVPEPLAAGLA 212 (234)
T ss_pred ----CC-ceecCceeeEeHHHHHHhCCC--Cc--cceeccHHHHHHHH-HcCceEEEecCccccccC
Confidence 11 122234457899999987532 22 34578988874443 245689888888887773
No 11
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=79.66 E-value=2.2 Score=37.80 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=27.0
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQ 218 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQ 218 (432)
+..|||++.|+|..++...+.++++.+.+.+..+..
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 112 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVI 112 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 556999999999888777777888876555555543
No 12
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=79.09 E-value=9.9 Score=37.00 Aligned_cols=136 Identities=14% Similarity=0.027 Sum_probs=83.0
Q ss_pred ccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCC----CCCC
Q 014004 185 YNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDD----YSTA 260 (432)
Q Consensus 185 YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~isH~iT~R~~~~~vHrr~~~~~g~~~C~~----~~~~ 260 (432)
|+|++++++|..++...++++++.+++.+-...-+++-.+...-.+. ..+........... ....+.. ...-
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 160 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYI-DRRGGESDGLTGGW---RASPLLEIAPDLSSY 160 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcch-heeccccccccccc---eecccccccccccch
Confidence 55999999999999999999999999998887777764432211111 11111000000000 0001111 0111
Q ss_pred CCccceEEeecccccHHHHHHhhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEecccc
Q 014004 261 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPT 327 (432)
Q Consensus 261 ppcTgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWGLDf~w~~caqg~~~~kIGVVDa~~VvH~g~Pt 327 (432)
+.+-+++..-+-.++|++++.+=. +....=.+.-|.-|..-+.. .+.++..+=.-.|.|...-+
T Consensus 161 ~~~~~~~~G~~~li~~~~~~~vG~--~de~~F~y~eD~D~~~R~~~-~G~~i~~~p~a~i~H~~g~s 224 (305)
T COG1216 161 LEVVASLSGACLLIRREAFEKVGG--FDERFFIYYEDVDLCLRARK-AGYKIYYVPDAIIYHKIGSS 224 (305)
T ss_pred hhhhhhcceeeeEEcHHHHHHhCC--CCcccceeehHHHHHHHHHH-cCCeEEEeeccEEEEeccCC
Confidence 223335677678899999998853 45556667777777655542 45689999888899984444
No 13
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=77.37 E-value=1.5 Score=38.18 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=31.3
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHh-CCcccCCCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE-GLEISQPAL 221 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~-gLeISQPAL 221 (432)
+.+|||++.|+|..++.-.+++.++.+.++ +..+..+..
T Consensus 79 a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~ 118 (201)
T cd04195 79 CTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGV 118 (201)
T ss_pred cCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccE
Confidence 689999999999999988889988887653 566665543
No 14
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=73.09 E-value=8.1 Score=35.72 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=31.6
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 220 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPA 220 (432)
+..|||++.|.|...+...++++++.+.+.+.++....
T Consensus 92 a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 129 (243)
T PLN02726 92 ASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGT 129 (243)
T ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEc
Confidence 67899999999999988889999998877777665443
No 15
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=69.73 E-value=8 Score=32.86 Aligned_cols=38 Identities=8% Similarity=-0.050 Sum_probs=28.1
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHH-HHhCCcccCCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIV-KDEGLEISQPA 220 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Iv-r~~gLeISQPA 220 (432)
+..|||++.|+|..++...+.+.++.. +..+..+..+.
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~ 112 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGD 112 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEee
Confidence 578999999999999998888888444 34345554433
No 16
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=67.01 E-value=5.9 Score=35.85 Aligned_cols=129 Identities=15% Similarity=0.061 Sum_probs=67.6
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCCCCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 262 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~isH~iT~R~~~~~vHrr~~~~~g~~~C~~~~~~pp 262 (432)
+.+|||++.|.|..++...++++..+....+..+.|+-+......-++-...+.-....+ +..+..++ ..+.
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~ 157 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSLLTRVQAMSLDYH---FTIEQVAR-----SSTG 157 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCchhhHhhhhhHHhh---hhHhHhhH-----hhcC
Confidence 689999999999999988888877777655665666543210000001000000000000 00000000 0000
Q ss_pred ccceEEeecccccHHHHHHhhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEec
Q 014004 263 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 324 (432)
Q Consensus 263 cTgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWGLDf~w~~caqg~~~~kIGVVDa~~VvH~g 324 (432)
+...+=..+-+|+|++|+.+-.+ .+. ..+=|+.+...+. .++.++..++...|.|..
T Consensus 158 ~~~~~~g~~~~~rr~~~~~vgg~--~~~--~~~ED~~l~~rl~-~~G~~~~~~~~~~v~~~~ 214 (232)
T cd06437 158 LFFNFNGTAGVWRKECIEDAGGW--NHD--TLTEDLDLSYRAQ-LKGWKFVYLDDVVVPAEL 214 (232)
T ss_pred CeEEeccchhhhhHHHHHHhCCC--CCC--cchhhHHHHHHHH-HCCCeEEEeccceeeeeC
Confidence 10111112237999999887432 222 2457877765543 246789999888888873
No 17
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=61.41 E-value=4.5 Score=36.17 Aligned_cols=41 Identities=12% Similarity=-0.021 Sum_probs=36.2
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDP 223 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~ 223 (432)
+.+|||++.|+|..++...+++.++.+...+..+.++....
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~ 116 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRI 116 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEe
Confidence 58999999999999999999999999988888888877544
No 18
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=61.04 E-value=6.5 Score=31.93 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=30.1
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 220 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPA 220 (432)
+..|||++.|+|..++.-.++++++.+++.+-.+.-+.
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 67779999999999999999999999999776554443
No 19
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=59.03 E-value=25 Score=31.53 Aligned_cols=124 Identities=16% Similarity=0.029 Sum_probs=64.8
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCC--CCCCc--cc-ccccccccCcccceeeecccCCCCCCCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALD--PVKSE--VH-HPITARRRNSKAHRRMYKYKGSGRCDDY 257 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd--~~s~~--is-H~iT~R~~~~~vHrr~~~~~g~~~C~~~ 257 (432)
+..|||++.|+|...+...+.+.+..+.+..-.+.-+... +.... +. +..++.. ..+....+ +
T Consensus 83 a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~--- 150 (219)
T cd06913 83 SSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRIPEDSTERYTRWINTLTR--EQLLTQVY-------T--- 150 (219)
T ss_pred cCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEecCcccchhhHHHHHhcCH--HHHHHHHH-------h---
Confidence 6899999999999999988888887776654333222211 11000 00 0000000 00000000 0
Q ss_pred CCCCCccceEEeecccccHHHHHHhhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEecc
Q 014004 258 STAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGL 325 (432)
Q Consensus 258 ~~~ppcTgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWGLDf~w~~caqg~~~~kIGVVDa~~VvH~g~ 325 (432)
+++| ++ -+-.-+++|++|+.+=. +++..-+.+=|+.+.+.+. ..+.+|..+|...+.++..
T Consensus 151 ~~~~-~~---~~~~~~~rr~~~~~~g~--f~~~~~~~~eD~~l~~r~~-~~g~~i~~~~~~~~~yr~~ 211 (219)
T cd06913 151 SHGP-TV---IMPTWFCSREWFSHVGP--FDEGGKGVPEDLLFFYEHL-RKGGGVYRVDRCLLLYRYH 211 (219)
T ss_pred hcCC-cc---ccccceeehhHHhhcCC--ccchhccchhHHHHHHHHH-HcCCceEEEcceeeeeeec
Confidence 1111 11 11112478999987642 3443345667887765432 2357899999877777633
No 20
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=58.83 E-value=6.3 Score=35.13 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=28.0
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQP 219 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQP 219 (432)
+..|||++.|.|...+...+.++++.+.+.+..+...
T Consensus 81 a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 81 ARGDYILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 4569999999999888888888887765555555443
No 21
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=55.89 E-value=57 Score=29.73 Aligned_cols=177 Identities=17% Similarity=0.205 Sum_probs=93.2
Q ss_pred eecCCCCCCCCCCCCCCCcEEEEEecccc--ccchhHHhhcCCCCCcEEEEEEecCccCccccccccCceeEEEeecccc
Q 014004 92 MRPLWSSPSKLNNQRPPMNLLAIAAGIKQ--KKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTK 169 (432)
Q Consensus 92 lr~Lwg~p~~~~~~~~~k~Lla~~VG~kq--k~~Vd~~VkKf~~~nFdvmLFHYDG~vd~W~d~eWs~~aiHVsa~kQtK 169 (432)
+|.-||++.... ..+.-+.+=+|... ...++..+++-....=||+++-+ +|.+..+.. +.+. ..+
T Consensus 6 IR~TW~~~~~~~---~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~---~D~y~nlt~--K~~~-----~~~ 72 (195)
T PF01762_consen 6 IRETWGNQRNFK---GVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDF---VDSYRNLTL--KTLA-----GLK 72 (195)
T ss_pred HHHHHhcccccC---CCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeec---ccccchhhH--HHHH-----HHH
Confidence 467799876432 24556666778776 45566666653233337777544 344544321 1111 123
Q ss_pred hhhhccccCccccccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCccc--ceeeec
Q 014004 170 WWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKA--HRRMYK 247 (432)
Q Consensus 170 WwfaKRFLHPDiVa~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~isH~iT~R~~~~~v--Hrr~~~ 247 (432)
|- .+.+ .+++||+.-|||+-| ++.++++..++.-.+.+.+.+... .....-..|.+.++. ....|
T Consensus 73 w~-~~~c------~~~~~v~k~DDD~~v---n~~~l~~~L~~~~~~~~~~~~~g~--~~~~~~~~r~~~~kw~v~~~~y- 139 (195)
T PF01762_consen 73 WA-SKHC------PNAKYVLKVDDDVFV---NPDRLVSFLKSLKQDPSKNSIYGG--CIKNGPPIRDPSSKWYVSEEEY- 139 (195)
T ss_pred HH-HhhC------CchhheeecCcEEEE---ehHHhhhhhhhcccCccccccccc--cccCCccccccccCceeeeeec-
Confidence 33 3322 358999999999988 556666666666333333333321 122222333333321 11111
Q ss_pred ccCCCCCCCCCCCCCccceEEeecccccHHHHHHhhhhhcCCCcccchhhhhhhhhhcC
Q 014004 248 YKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQG 306 (432)
Q Consensus 248 ~~g~~~C~~~~~~ppcTgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWGLDf~w~~caqg 306 (432)
....-| .|....+=++|+++.+.+.... .....-+-=|-.+|.|++.
T Consensus 140 --------~~~~yP---~y~~G~~yvls~~~v~~i~~~~-~~~~~~~~eDv~iGi~~~~ 186 (195)
T PF01762_consen 140 --------PDDYYP---PYCSGGGYVLSSDVVKRIYKAS-SHTPFFPLEDVFIGILAEK 186 (195)
T ss_pred --------ccccCC---CcCCCCeEEecHHHHHHHHHHh-hcCCCCCchHHHHHHHHHH
Confidence 011233 3445677789999998877432 2223334455556888863
No 22
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=53.39 E-value=20 Score=31.52 Aligned_cols=124 Identities=19% Similarity=0.143 Sum_probs=68.2
Q ss_pred EEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCccc--ceeee-cccCCCCCCCCCCCCCc
Q 014004 187 YIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKA--HRRMY-KYKGSGRCDDYSTAPPC 263 (432)
Q Consensus 187 YIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~isH~iT~R~~~~~v--Hrr~~-~~~g~~~C~~~~~~ppc 263 (432)
||.+.|+|-.++.....+..+.++.-+..+.|+...... ....+|.-...... |.... .....+.|.
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 70 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPL-------- 70 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCc--------
Confidence 789999999999988999988888558888888876542 11122222111100 00000 000111111
Q ss_pred cceEEeecccccHHHHHHhhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEecccc
Q 014004 264 IGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPT 327 (432)
Q Consensus 264 TgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWGLDf~w~~caqg~~~~kIGVVDa~~VvH~g~Pt 327 (432)
++=.-.=++++++++.+= -.+ ..--.|=|..+..-+. ..+.+++.++.. ++|+..|.
T Consensus 71 --~~~G~~~~~r~~~l~~vg--~~~-~~~~~~ED~~l~~~l~-~~G~~~~~~~~~-~~~~~~p~ 127 (193)
T PF13632_consen 71 --FLSGSGMLFRREALREVG--GFD-DPFSIGEDMDLGFRLR-RAGYRIVYVPDA-IVYTEAPP 127 (193)
T ss_pred --cccCcceeeeHHHHHHhC--ccc-ccccccchHHHHHHHH-HCCCEEEEeccc-ceeeeCCC
Confidence 111334568899998762 122 1223345666653332 235799999887 44554554
No 23
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=52.64 E-value=8.1 Score=34.79 Aligned_cols=124 Identities=15% Similarity=0.029 Sum_probs=64.7
Q ss_pred cccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCCCCCc
Q 014004 184 EYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPPC 263 (432)
Q Consensus 184 ~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~isH~iT~R~~~~~vHrr~~~~~g~~~C~~~~~~ppc 263 (432)
.||||++.|+|..++.-.+.++++.++..+..+.++......+. ..+..... ..... ..+..... +.. ...+
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~-~~~~~-~~~~~~~~--~~~---~~~~ 155 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGE-ESLFKRMC-YAEYK-GFFDIGMV--SRN---ERNA 155 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCC-ccHHHHHH-hHHHH-HHHHHHhc--ccc---ccCc
Confidence 49999999999999998899999888766777766532211110 01111000 00000 00000000 000 0011
Q ss_pred cceEEeecccccHHHHHHhhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEE
Q 014004 264 IGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIV 321 (432)
Q Consensus 264 TgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWGLDf~w~~caqg~~~~kIGVVDa~~Vv 321 (432)
.++-..+-+|+|++++.+= . +++.. -+=|+.+..-+. ..+.++..++...+.
T Consensus 156 -~~~~g~~~~~rr~~~~~iG-g-f~~~~--~~eD~dl~~r~~-~~G~~~~~~~~~~~~ 207 (236)
T cd06435 156 -IIQHGTMCLIRRSALDDVG-G-WDEWC--ITEDSELGLRMH-EAGYIGVYVAQSYGH 207 (236)
T ss_pred -eEEecceEEEEHHHHHHhC-C-CCCcc--ccchHHHHHHHH-HCCcEEEEcchhhcc
Confidence 1222333479999999873 2 23322 145777765554 245788888765443
No 24
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=47.42 E-value=33 Score=34.48 Aligned_cols=191 Identities=17% Similarity=0.172 Sum_probs=95.4
Q ss_pred CCCcEEEEEeccccccchhHHhhcC-----------CCCCcEEEEEEecCccCcccc--ccccCc------eeEEE--ee
Q 014004 107 PPMNLLAIAAGIKQKKIVDQIVRKF-----------PSKDFVVMLFHYDGVVDEWKD--LVWADR------AIHVS--AA 165 (432)
Q Consensus 107 ~~k~Lla~~VG~kqk~~Vd~~VkKf-----------~~~nFdvmLFHYDG~vd~W~d--~eWs~~------aiHVs--a~ 165 (432)
.++--|++|+ ++..+++.++++.- +..++.|++ --||+.|+=.+ -++.+. -+++. ..
T Consensus 69 ~~~isVVIP~-yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIV-VDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~ 146 (333)
T PTZ00260 69 DVDLSIVIPA-YNEEDRLPKMLKETIKYLESRSRKDPKFKYEIII-VNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR 146 (333)
T ss_pred CeEEEEEEee-CCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEE-EeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC
Confidence 4455677775 44455566555432 122555544 47888775322 112111 24443 34
Q ss_pred cccchhhhccccCccccccccEEEEecccccCCCCCHHHHHHHHHH---hCCcccCCCCCCC-CC-cccccccccc-cCc
Q 014004 166 NQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKD---EGLEISQPALDPV-KS-EVHHPITARR-RNS 239 (432)
Q Consensus 166 kQtKWwfaKRFLHPDiVa~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~---~gLeISQPALd~~-s~-~isH~iT~R~-~~~ 239 (432)
|+.|..-.+.=+ -.+..|||++.|.|...+..++.++++.+++ .+.++..-+.... .+ ....+--.|+ -..
T Consensus 147 N~G~~~A~~~Gi---~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~ 223 (333)
T PTZ00260 147 NKGKGGAVRIGM---LASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMY 223 (333)
T ss_pred CCChHHHHHHHH---HHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHH
Confidence 556644222111 1267899999999999999999999998875 4555444332211 01 0111111111 111
Q ss_pred ccceeeecccCCCCCCCCCCCCCccceEEeecccccHHHHHHhhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEee
Q 014004 240 KAHRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDS 317 (432)
Q Consensus 240 ~vHrr~~~~~g~~~C~~~~~~ppcTgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWGLDf~w~~caqg~~~~kIGVVDa 317 (432)
.+|... +.- |... -.-..+||- +|+|++++.+.. +-...+|+.|..+-..+.. .+.+|+-|--
T Consensus 224 ~~~~l~-~~~----~~~~-i~D~~~Gfk-----~~~r~~~~~i~~---~~~~~~~~fd~Ell~~a~~-~g~~I~EvPv 286 (333)
T PTZ00260 224 GFHFIV-NTI----CGTN-LKDTQCGFK-----LFTRETARIIFP---SLHLERWAFDIEIVMIAQK-LNLPIAEVPV 286 (333)
T ss_pred HHHHHH-HHH----cCCC-cccCCCCeE-----EEeHHHHHHHhh---hccccCccchHHHHHHHHH-cCCCEEEEce
Confidence 112110 000 1100 000222333 789999987642 2234588888888777652 3344544433
No 25
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=40.64 E-value=19 Score=32.98 Aligned_cols=125 Identities=19% Similarity=0.110 Sum_probs=74.3
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHH--hCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKD--EGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTA 260 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~--~gLeISQPALd~~s~~isH~iT~R~~~~~vHrr~~~~~g~~~C~~~~~~ 260 (432)
++||||++.|+|+.++...+.+...-... .|+-=+-|-..+..+. .-.+-.-...+|-.++..
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~---~~~l~~~~~~~~~~~~~a------------ 94 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGF---WSRLEAAFFNFLPGVLQA------------ 94 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCH---HHHHHHHHHhHHHHHHHH------------
Confidence 89999999999999998888888876554 3443223333332221 111111001122111111
Q ss_pred CCccceEEeecccccHHHHHHhhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEeccc
Q 014004 261 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLP 326 (432)
Q Consensus 261 ppcTgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWGLDf~w~~caqg~~~~kIGVVDa~~VvH~g~P 326 (432)
..-++|+=.|+=.|+|++++..= -++.+.+.-.=||.++..+.. .+.+|...... |.++..|
T Consensus 95 ~~~~~~~~G~~m~~rr~~L~~~G--G~~~l~~~ladD~~l~~~~~~-~G~~v~~~~~~-v~~~~~~ 156 (175)
T PF13506_consen 95 LGGAPFAWGGSMAFRREALEEIG--GFEALADYLADDYALGRRLRA-RGYRVVLSPYP-VVQTSVP 156 (175)
T ss_pred hcCCCceecceeeeEHHHHHHcc--cHHHHhhhhhHHHHHHHHHHH-CCCeEEEcchh-eeecccC
Confidence 01245777788889999998762 235556677889999988863 56777776543 4455333
No 26
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=39.84 E-value=43 Score=32.41 Aligned_cols=95 Identities=16% Similarity=0.195 Sum_probs=52.5
Q ss_pred EEEEecccccc-----chhHHh---hcC-CCCCcEEEEEEecCccCccc-cc-cccC--ceeEE-Eeecccchh-hhccc
Q 014004 112 LAIAAGIKQKK-----IVDQIV---RKF-PSKDFVVMLFHYDGVVDEWK-DL-VWAD--RAIHV-SAANQTKWW-FAKRF 176 (432)
Q Consensus 112 la~~VG~kqk~-----~Vd~~V---kKf-~~~nFdvmLFHYDG~vd~W~-d~-eWs~--~aiHV-sa~kQtKWw-faKRF 176 (432)
+++||..+... .+...+ +++ +..++.|++..++.. ++|. .+ +..+ ..+++ .-..+.+.| .++.-
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~-~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~ar 80 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSS-DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKAR 80 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCc-hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHH
Confidence 67899888742 232223 232 356888888887665 4441 11 1111 22211 111112222 22211
Q ss_pred cCccccccccEEEEecccccCCCCCHHHHHH
Q 014004 177 LHPDIVAEYNYIFLWDEDIGVENFNPRRYLS 207 (432)
Q Consensus 177 LHPDiVa~YDYIFLwDDDL~Vd~f~i~ryf~ 207 (432)
--.=-.+.-|||+++|-|+-++...++++++
T Consensus 81 N~g~~~A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 81 NIGAKYARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred HHHHHHcCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 1112237899999999999999888888888
No 27
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=39.60 E-value=25 Score=27.56 Aligned_cols=36 Identities=17% Similarity=0.096 Sum_probs=24.4
Q ss_pred cccEEEEecccccCCCCCHHHH-HHHHHHhCCcccCC
Q 014004 184 EYNYIFLWDEDIGVENFNPRRY-LSIVKDEGLEISQP 219 (432)
Q Consensus 184 ~YDYIFLwDDDL~Vd~f~i~ry-f~Ivr~~gLeISQP 219 (432)
.+||+++.|+|..++...+.++ ....+..+..+.++
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELLADPEADAVGG 113 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEec
Confidence 7999999999999888777776 23333333444433
No 28
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=37.56 E-value=20 Score=28.82 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=27.1
Q ss_pred ccccEEEEecccccCCCCCHHHH-HHHHHHhCCcccCCCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRY-LSIVKDEGLEISQPAL 221 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ry-f~Ivr~~gLeISQPAL 221 (432)
..+|||++.|+|..++...+.++ ..+.+..+..+..+..
T Consensus 77 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 116 (180)
T cd06423 77 AKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRV 116 (180)
T ss_pred cCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeE
Confidence 38999999999999887777777 3444444455544444
No 29
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=36.41 E-value=48 Score=28.61 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=25.8
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQ 218 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQ 218 (432)
+.-|||++.|+|...+.-.+.++++.. +.+.++.-
T Consensus 79 a~~d~i~~~D~D~~~~~~~l~~l~~~~-~~~~~~v~ 113 (181)
T cd04187 79 ARGDAVITMDADLQDPPELIPEMLAKW-EEGYDVVY 113 (181)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHH-hCCCcEEE
Confidence 445999999999998877788888863 44555433
No 30
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=36.30 E-value=28 Score=30.29 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=30.0
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHH-HHhCCcccCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIV-KDEGLEISQP 219 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Iv-r~~gLeISQP 219 (432)
+.+|||++.|+|-.++...+++.++.+ +..+..+..+
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 119 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYS 119 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEc
Confidence 678999999999999888889999888 5556666544
No 31
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=35.24 E-value=43 Score=30.89 Aligned_cols=71 Identities=18% Similarity=0.220 Sum_probs=37.3
Q ss_pred CCCCCCccccCCCcceecCCCCCCCCCCCC-CCCcEEEEEeccccccc----hh----------HHhhcCCC------CC
Q 014004 77 EALPEGIVSKTSNLEMRPLWSSPSKLNNQR-PPMNLLAIAAGIKQKKI----VD----------QIVRKFPS------KD 135 (432)
Q Consensus 77 e~LP~gIv~~~Sdl~lr~Lwg~p~~~~~~~-~~k~Lla~~VG~kqk~~----Vd----------~~VkKf~~------~n 135 (432)
++||+.-|.+-+|-...+|- +..+. .+=.|++++ |.-++.. ++ ..+++|.. .-
T Consensus 34 ~Rlp~~~v~r~aD~~p~~l~-----~~l~sdGrfri~vFa-gd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~ 107 (169)
T PF07976_consen 34 RRLPSAKVVRHADGNPVHLQ-----DDLPSDGRFRILVFA-GDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSV 107 (169)
T ss_dssp CB----EEEETTTTEEEEGG-----GG--SSS-EEEEEEE-ETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSS
T ss_pred cccCCceEEEEcCCCChhHh-----hhcccCCCEEEEEEe-CCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCe
Confidence 47999999999997766663 22233 333566665 4433321 22 34456643 33
Q ss_pred cEEEEEEecCccCccccccccC
Q 014004 136 FVVMLFHYDGVVDEWKDLVWAD 157 (432)
Q Consensus 136 FdvmLFHYDG~vd~W~d~eWs~ 157 (432)
||++|+| -..++++||.+
T Consensus 108 ~~~~~I~----~~~~~~~e~~d 125 (169)
T PF07976_consen 108 FDVLLIH----SSPRDEVELFD 125 (169)
T ss_dssp EEEEEEE----SS-CCCS-GGG
T ss_pred eEEEEEe----cCCCCceeHHH
Confidence 9999999 24566777754
No 32
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=34.15 E-value=54 Score=30.64 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=25.8
Q ss_pred cccccEEEEecccccCCCCCHHHHHHHHHH
Q 014004 182 VAEYNYIFLWDEDIGVENFNPRRYLSIVKD 211 (432)
Q Consensus 182 Va~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~ 211 (432)
.+.+|||++.|.|..++.--+.++.+.+.+
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~ 100 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMDK 100 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHHh
Confidence 478999999999999988888888877743
No 33
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=33.67 E-value=48 Score=37.50 Aligned_cols=97 Identities=21% Similarity=0.302 Sum_probs=70.1
Q ss_pred eccccccchhHHhhcCCCCCcEEEEEEecCc-------------------c-------CccccccccCceeEEEeecccc
Q 014004 116 AGIKQKKIVDQIVRKFPSKDFVVMLFHYDGV-------------------V-------DEWKDLVWADRAIHVSAANQTK 169 (432)
Q Consensus 116 VG~kqk~~Vd~~VkKf~~~nFdvmLFHYDG~-------------------v-------d~W~d~eWs~~aiHVsa~kQtK 169 (432)
+|..-|+.-.++=-..+.++|+|+++-|.-. | +--+|+-|-+-.+-|....-.|
T Consensus 631 ~gGsGkEF~~aLGGN~pREQFTvVmLTYERe~VLm~sLeRL~gLPYLnKvvVVWNspk~P~ddl~WPdigvPv~viR~~~ 710 (907)
T KOG2264|consen 631 AGGSGKEFSKALGGNRPREQFTVVMLTYEREAVLMGSLERLHGLPYLNKVVVVWNSPKDPPDDLTWPDIGVPVEVIRVAE 710 (907)
T ss_pred CCCchHHHHHHhcCCCccceEEEEEEEehHHHHHHHHHHHhhCCcccceEEEEeCCCCCChhcccCcCCCCceEEEEccc
Confidence 3455666666666677889999999988532 2 2234788987777776666666
Q ss_pred hhhhccccCccccccccEEEEecccccCCCCCHHHHHHHHHHhC
Q 014004 170 WWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEG 213 (432)
Q Consensus 170 WwfaKRFLHPDiVa~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~g 213 (432)
==.-+|||-+|.++ =+.|.-.|||..+-|..|-==|+.=|+..
T Consensus 711 NsLNNRFlPwd~IE-TEAvLS~DDDahLrhdEI~fgFRVWRE~R 753 (907)
T KOG2264|consen 711 NSLNNRFLPWDRIE-TEAVLSLDDDAHLRHDEIIFGFRVWRENR 753 (907)
T ss_pred ccccccccCchhhh-heeeeecccchhhhhhheeeeeehhhhcc
Confidence 66789999999875 58999999999998887754455555443
No 34
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=33.02 E-value=33 Score=30.15 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=29.5
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 220 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPA 220 (432)
+.+|||++.|+|..++.-.++++++.+.+.+-...+.+
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 118 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGP 118 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeee
Confidence 57999999999999988888888887666655444443
No 35
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=31.15 E-value=41 Score=29.23 Aligned_cols=46 Identities=22% Similarity=0.128 Sum_probs=31.1
Q ss_pred cccHHHHHHhhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEEe
Q 014004 273 VFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHL 323 (432)
Q Consensus 273 VFSR~AwrCvwhmiQNDLvhGWGLDf~w~~caqg~~~~kIGVVDa~~VvH~ 323 (432)
+|+|++++.+-.+ ... ..|+-|+.+...+.. ..++.+++...+.|+
T Consensus 158 ~~r~~~~~~~~~~--~~~-~~~~~D~~~~~~~~~--~~~~~~~~~~~~~~r 203 (214)
T cd04196 158 AFNRELLELALPF--PDA-DVIMHDWWLALLASA--FGKVVFLDEPLILYR 203 (214)
T ss_pred eEEHHHHHhhccc--ccc-ccccchHHHHHHHHH--cCceEEcchhHHHHh
Confidence 6999999887422 222 267778776666542 457999988777666
No 36
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=29.68 E-value=30 Score=31.41 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=32.5
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALD 222 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd 222 (432)
+..|||++.|+|...+...+.++++.++..+..+.++...
T Consensus 108 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 108 ATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred cCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 4569999999999999888889998887667777666554
No 37
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=29.27 E-value=38 Score=29.89 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=32.4
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDP 223 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~ 223 (432)
+..|||++.|+|..++...+++.+......+..++.+....
T Consensus 71 a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 111 (221)
T cd02522 71 ARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRF 111 (221)
T ss_pred ccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeee
Confidence 45899999999999998888888777777776666655443
No 38
>PF09828 Chrome_Resist: Chromate resistance exported protein; InterPro: IPR018634 Members of this family of bacterial proteins are involved in the reduction of chromate accumulation and are essential for chromate resistance [, ].
Probab=29.24 E-value=36 Score=31.51 Aligned_cols=55 Identities=20% Similarity=0.506 Sum_probs=36.6
Q ss_pred hhhhccccCccccccccEEEEeccc-------ccCCCCCH-----------HHHHHHHHHhCCcccCCCCCCCCCccccc
Q 014004 170 WWFAKRFLHPDIVAEYNYIFLWDED-------IGVENFNP-----------RRYLSIVKDEGLEISQPALDPVKSEVHHP 231 (432)
Q Consensus 170 WwfaKRFLHPDiVa~YDYIFLwDDD-------L~Vd~f~i-----------~ryf~Ivr~~gLeISQPALd~~s~~isH~ 231 (432)
=|+++||+-|+- +++|++++. .+-..||+ -.|=-++++||| .+|||..= ++|-|.
T Consensus 15 ~WLIrRFIDp~A----~F~fv~~~~v~~~~~~~~A~pFD~~ga~~tH~g~~cTFe~ll~~f~L--~dpaL~~l-a~IV~~ 87 (135)
T PF09828_consen 15 PWLIRRFIDPEA----EFLFVPPPEVLDVACPFDAIPFDIPGAEFTHRGDRCTFEVLLASFGL--DDPALARL-AAIVRG 87 (135)
T ss_pred HHHHHHhcCCCc----eEEEeCchhhccccccCCCCcccCCCCeeeeeCCcccHHHHHHHhCC--CCHHHHHH-HHHHHH
Confidence 488999998764 567787766 22223443 246678899999 89999763 344333
No 39
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=29.15 E-value=50 Score=30.36 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=29.8
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHh--CCcccCCC
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE--GLEISQPA 220 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~--gLeISQPA 220 (432)
+.+|||++.|.|..++.-.+.+.++.+.+. ++-+.|+-
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 688999999999999998888888877643 44444544
No 40
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=28.35 E-value=54 Score=33.26 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=29.8
Q ss_pred ccEEEEecccccCCCCCHHHHHHHHHHhCCccc
Q 014004 185 YNYIFLWDEDIGVENFNPRRYLSIVKDEGLEIS 217 (432)
Q Consensus 185 YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeIS 217 (432)
+|||++.|.|..++...+++.++.+++.+..+.
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 999999999999999999999999988776654
No 41
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=28.08 E-value=28 Score=28.16 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=19.3
Q ss_pred ccccccccEEEEecccccCCCCCHHHHHHHHHHhC
Q 014004 179 PDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEG 213 (432)
Q Consensus 179 PDiVa~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~g 213 (432)
..+...|||||++|.+ .++-.|+.|
T Consensus 13 ~~i~~~~~~iFt~D~~----------~~~~~~~~G 37 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS----------FVEEYRNLG 37 (79)
T ss_pred hhhCCCCCEEEEECHH----------HHHHHHHcC
Confidence 4778999999999974 456666666
No 42
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=25.31 E-value=47 Score=28.35 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=20.5
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHH
Q 014004 183 AEYNYIFLWDEDIGVENFNPRRYLSIV 209 (432)
Q Consensus 183 a~YDYIFLwDDDL~Vd~f~i~ryf~Iv 209 (432)
+.+|||+++|+|..++...+.+.++.+
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 689999999999988765555555543
No 43
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=23.89 E-value=65 Score=31.78 Aligned_cols=26 Identities=27% Similarity=0.315 Sum_probs=18.2
Q ss_pred cchhhhhHHHHHHHHHhhhceeeeec
Q 014004 18 SCLCSLFIAAALICSVYFIGSSFVAK 43 (432)
Q Consensus 18 ~~~~~~~~~~~~~~~~~fi~~~~~~~ 43 (432)
.++..+|++++|.+++|||++++.-.
T Consensus 201 g~f~wl~i~~~l~~~~Y~i~g~~~n~ 226 (268)
T PF09451_consen 201 GFFTWLFIILFLFLAAYLIFGSWYNY 226 (268)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhheee
Confidence 34456777777777899998876543
No 44
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=23.37 E-value=1.1e+02 Score=30.05 Aligned_cols=95 Identities=12% Similarity=0.205 Sum_probs=51.3
Q ss_pred ccccccchhHHhhcCCC-CCcEEEEEEecCccCccccccccCceeEEEeecccchhhhccccCccccccccEEEEecccc
Q 014004 117 GIKQKKIVDQIVRKFPS-KDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDI 195 (432)
Q Consensus 117 G~kqk~~Vd~~VkKf~~-~nFdvmLFHYDG~vd~W~d~eWs~~aiHVsa~kQtKWwfaKRFLHPDiVa~YDYIFLwDDDL 195 (432)
..+......++|+.... ..-.=++....+...--...+|.+..+-|-...+++=-.-.||+.. ---+=|.|+..|||+
T Consensus 8 ~~~R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~-~~i~T~AVl~~DDDv 86 (247)
T PF09258_consen 8 SYKRSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPD-PEIETDAVLSLDDDV 86 (247)
T ss_dssp -SS-HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGGS---TT--SSEEEEEETTE
T ss_pred cccchHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcCcCc-cccCcceEEEecCCc
Confidence 44444555556655422 2233233333332222223556555555555666666667887643 334579999999999
Q ss_pred cCCCCCHHHHHHHHHHh
Q 014004 196 GVENFNPRRYLSIVKDE 212 (432)
Q Consensus 196 ~Vd~f~i~ryf~Ivr~~ 212 (432)
.++..+++.=|+.-+++
T Consensus 87 ~~~~~~l~faF~~W~~~ 103 (247)
T PF09258_consen 87 MLSCDELEFAFQVWREF 103 (247)
T ss_dssp EE-HHHHHHHHHHHCCS
T ss_pred ccCHHHHHHHHHHHHhC
Confidence 99999999989888754
No 45
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=23.27 E-value=43 Score=28.45 Aligned_cols=44 Identities=20% Similarity=0.431 Sum_probs=35.7
Q ss_pred hccccCccccccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCC
Q 014004 173 AKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 220 (432)
Q Consensus 173 aKRFLHPDiVa~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPA 220 (432)
..-|+||.+.++--.|||+-|++|+.... ++-.++.|+.||.-+
T Consensus 33 ~~ay~~Pa~~~~~P~lWIP~D~~GvS~~e----i~~~~~~~v~~Sd~g 76 (95)
T PF12621_consen 33 KHAYLHPAVSAPQPILWIPRDPLGVSRQE----IEETRKVGVPISDEG 76 (95)
T ss_pred HhccCCHhHcCCCCeEEeecCCCCCCHHH----HHHhhcCCeEEECCC
Confidence 45689999999999999999999997644 455677778887655
No 46
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=21.70 E-value=1.1e+02 Score=31.41 Aligned_cols=187 Identities=17% Similarity=0.236 Sum_probs=100.3
Q ss_pred CccccCCCcce----ecCCCCCCC-CCCCCCCCcEEEEEeccccccchhHHhhcCCCCCcEEEEEEecCccCcccccccc
Q 014004 82 GIVSKTSNLEM----RPLWSSPSK-LNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWA 156 (432)
Q Consensus 82 gIv~~~Sdl~l----r~Lwg~p~~-~~~~~~~k~Lla~~VG~kqk~~Vd~~VkKf~~~nFdvmLFHYDG~vd~W~d~eWs 156 (432)
+|-....++.. |+=||+++. +.......-||+++..- . .+++.|.+-....-||+.--|... +..+.+
T Consensus 100 ~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~--~-~~~~~l~~Ea~~ygDIi~~df~Dt---y~nltl- 172 (349)
T KOG2287|consen 100 LVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNE--D-KLNKLLADEARLYGDIIQVDFEDT---YFNLTL- 172 (349)
T ss_pred EEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcH--H-HHHHHHHHHHHHhCCEEEEecccc---hhchHH-
Confidence 55667777765 578999875 11112222333333222 1 456777766566679988877443 222221
Q ss_pred CceeEEEeecccchhhhccccCccccccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCccccc-cccc
Q 014004 157 DRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHP-ITAR 235 (432)
Q Consensus 157 ~~aiHVsa~kQtKWwfaKRFLHPDiVa~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~isH~-iT~R 235 (432)
+.+++ -+|--.+ ..+++||.=.|||+-+ +++.+++..++.. +|+=+-=.|.+... -..|
T Consensus 173 -Ktl~~-----l~w~~~~-------cp~akfi~K~DDDvfv---~~~~L~~~L~~~~----~~~~~~~~G~v~~~~~p~R 232 (349)
T KOG2287|consen 173 -KTLAI-----LLWGVSK-------CPDAKFILKIDDDVFV---NPDNLLEYLDKLN----DPSSDLYYGRVIQNAPPIR 232 (349)
T ss_pred -HHHHH-----HHHHHhc-------CCcceEEEeccCceEE---cHHHHHHHHhccC----CCCcceEEEeecccCCCCC
Confidence 11110 1121111 1379999999999987 5566666666665 33322222223222 2223
Q ss_pred ccCcccceeeecccCCCCCCCCCCCCCccceEEeecccccHHHHHHhhhhhcCCCcccchhhhhhhhhhcC
Q 014004 236 RRNSKAHRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQG 306 (432)
Q Consensus 236 ~~~~~vHrr~~~~~g~~~C~~~~~~ppcTgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWGLDf~w~~caqg 306 (432)
.+.++ . |-.+-.-.|+ .-| .|+=.|.=|+|+++-+.+.. .......-|-=|-.++-|++.
T Consensus 233 ~~~~K---w-yVp~~~y~~~---~YP---~Y~sG~gYvis~~~a~~l~~-~s~~~~~~~iEDV~~g~~l~~ 292 (349)
T KOG2287|consen 233 DKTSK---W-YVPESEYPCS---VYP---PYASGPGYVISGDAARRLLK-ASKHLKFFPIEDVFVGGCLAE 292 (349)
T ss_pred CCCCC---C-ccCHHHCCCC---CCC---CcCCCceeEecHHHHHHHHH-HhcCCCccchHHHHHHHHHHH
Confidence 32221 0 0000000121 122 24446788999999998886 456677777777888999974
No 47
>TIGR02165 cas_GSU0054 CRISPR-associated protein, GSU0054 family. This model represents a rare CRISPR-associated protein. So far, members are found in Geobacter sulfurreducens and in two unpublished genomes: Gemmata obscuriglobus and Actinomyces naeslundii.CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.
Probab=21.52 E-value=17 Score=38.45 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=24.7
Q ss_pred CCCCCCccceEEeecccccHHHHHHhhhhhcCCCcccchhhhhhhh
Q 014004 257 YSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGY 302 (432)
Q Consensus 257 ~~~~ppcTgFVEiMAPVFSR~AwrCvwhmiQNDLvhGWGLDf~w~~ 302 (432)
+++.|.++.++|+.+ .|-||-..-|||+|++.+.
T Consensus 74 e~~~pe~a~~~e~iv------------~~A~~i~hLGWGiDmv~G~ 107 (465)
T TIGR02165 74 DPTAPEFADHKEAIV------------EAAQNINHLGWGIDMVAGD 107 (465)
T ss_pred CCCCchHHHHHHHHH------------HHHhhccccccchhhcccc
Confidence 355566666666532 5779999999999999864
No 48
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=20.55 E-value=2.5e+02 Score=28.95 Aligned_cols=102 Identities=18% Similarity=0.270 Sum_probs=64.3
Q ss_pred cEEEEEeccccccchhHHhh--cCCCCCcEEEEEEecCccCcccc---ccc-------cCceeEEEeeccc---chhh--
Q 014004 110 NLLAIAAGIKQKKIVDQIVR--KFPSKDFVVMLFHYDGVVDEWKD---LVW-------ADRAIHVSAANQT---KWWF-- 172 (432)
Q Consensus 110 ~Lla~~VG~kqk~~Vd~~Vk--Kf~~~nFdvmLFHYDG~vd~W~d---~eW-------s~~aiHVsa~kQt---KWwf-- 172 (432)
.|..+++|..-...+..+.+ .+....+.+.+|.-| ...+|.. =+| ....+|-.....+ .|-.
T Consensus 2 ~~~vv~~g~~~~~~~~~lkSil~~n~~~l~Fhi~~d~-~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~ws~l~ 80 (304)
T cd06430 2 HLAVVACGERLEETLTMLKSAIVFSQKPLRFHIFAED-QLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEWKKLF 80 (304)
T ss_pred EEEEEEcCCcHHHHHHHHHHHHHhCCCCEEEEEEECC-ccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhhhhcc
Confidence 36778888874332222222 234567899999844 3344432 123 2334454443333 3432
Q ss_pred ----hccccCccccccccEEEEecccccCCCCCHHHHHHHHHHhC
Q 014004 173 ----AKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEG 213 (432)
Q Consensus 173 ----aKRFLHPDiVa~YDYIFLwDDDL~Vd~f~i~ryf~Ivr~~g 213 (432)
..|++-|+++.++|-|.-.|-|+-+ .-+++.++++.+.++
T Consensus 81 ~~~~y~RL~ip~lLp~~dkvLYLD~Dii~-~~dI~eL~~~~~df~ 124 (304)
T cd06430 81 KPCAAQRLFLPSLLPDVDSLLYVDTDILF-LRPVEEIWSFLKKFN 124 (304)
T ss_pred cHHHHHHHHHHHHhhhhceEEEeccceee-cCCHHHHHHHHhhcC
Confidence 3578889999999999999999988 568999999866654
Done!