BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014005
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 273 bits (698), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 152/377 (40%), Positives = 226/377 (59%), Gaps = 44/377 (11%)
Query: 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
++W SQ G D+++ + DI+S +EF+ +G+ LA GD+GGRV++F+
Sbjct: 10 IQWCFSQVKGA--VDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQ---------- 57
Query: 72 ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
E++ S S EY + FQSHEPEFDYLKSLEIEEKIN++RW N + F+
Sbjct: 58 ------EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111
Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191
LSTNDKTIKLWK I E D P E L E++ + P+ +
Sbjct: 112 LSTNDKTIKLWK--------ISERDKRP----EGYNLKEED--GRYRDPTTVTTLRVPVF 157
Query: 192 ENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQ 251
M V A ++++ +AH + D ET++SADDLRINLW+LEI+D+
Sbjct: 158 RPMDLM-------VEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDR 210
Query: 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 311
FNIVD+KP+NM++LTEVIT+AEFHP CN YSSS+G +RL DMR SALCD +++
Sbjct: 211 SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE 270
Query: 312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRYEPVMTLSFCGIYVWIL 371
+ E ++SFF+EII+SISD+KF++ G+++++RDY+++KV+ + + + + +
Sbjct: 271 E-PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWD----LNMENRPVETYQV 325
Query: 372 RQLQHSRFMSIYALSCV 388
+ S+ S+Y C+
Sbjct: 326 HEYLRSKLCSLYENDCI 342
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 32/155 (20%)
Query: 124 APNGSMFILSTNDKTIKLWKVRD----------QKVKKIKE--------MDHFPFVSSEN 165
+P+GS F+ S++D+TI+LW+ + Q+V + + +DH + N
Sbjct: 897 SPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLIN 956
Query: 166 TLLAEKNFMNEHNPPSFAHGYHLEWT----ENMATKIANVGNS--VHARCQKVYPHAHDF 219
+ +++ E HL++ EN A +I + N+ +R Q H
Sbjct: 957 GRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQ------HKK 1010
Query: 220 XXXXXXXXXDCETFVSA-DDLRINLWNLEISDQCF 253
D +T +S+ DD I +WN ++ D+C
Sbjct: 1011 TVWHIQFTADEKTLISSSDDAEIQVWNWQL-DKCI 1044
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 38/144 (26%)
Query: 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQM--DFT 84
+ L +V ++F G+YLA G K T +S L ++ D
Sbjct: 59 KSLDHTSVVCCVKFSNDGEYLATG------------CNKTTQVYRVSDGSLVARLSDDSA 106
Query: 85 STSHPEYRYKTEFQSHEPEFD-YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK 143
+ PE S P D Y++S+ C +P+G D+ I++W
Sbjct: 107 ANKDPE----NLNTSSSPSSDLYIRSV-----------CFSPDGKFLATGAEDRLIRIWD 151
Query: 144 VRDQKV--------KKIKEMDHFP 159
+ ++K+ + I +D+FP
Sbjct: 152 IENRKIVMILQGHEQDIYSLDYFP 175
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK 151
E D LK++ + + W +P+G+ ++ DKTIK+W V KV+K
Sbjct: 229 EDDSLKNVAHSGSVFGLTW--SPDGTKIASASADKTIKIWNVATLKVEK 275
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 39/254 (15%)
Query: 30 QDVD-IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH 88
+DV+ IV + GD + V + +V+LF+ H + DF+ H
Sbjct: 795 EDVEVIVKCCSWSADGDKIIVAAKN-KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH 853
Query: 89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA----APNGSMFILSTNDKTIKLW-- 142
+++ D L++ + + W +P+GS F+ +++D+TI++W
Sbjct: 854 LAVIALSQYCVELWNID--SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 911
Query: 143 -KVRDQKVKKIKEMDHFPFVSSENTLLAEKN---------------FMNEHNPPSFAHGY 186
KV +K+ F +E +LA N ++ E
Sbjct: 912 KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP 971
Query: 187 HLEWT----ENMATKIANVGNSVHARCQKVYPH--AHDFXXXXXXXXXDCETFV-SADDL 239
HLE+ E+ A KI + N+ +V+ H D +T + S++D
Sbjct: 972 HLEYVAFGDEDGAIKIIELPNN------RVFSSGVGHKKAVRHIQFTADGKTLISSSEDS 1025
Query: 240 RINLWNLEISDQCF 253
I +WN + D F
Sbjct: 1026 VIQVWNWQTGDYVF 1039
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 39/254 (15%)
Query: 30 QDVD-IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH 88
+DV+ IV + GD + V + +V+LF+ H + DF+ H
Sbjct: 802 EDVEVIVKCCSWSADGDKIIVAAKN-KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH 860
Query: 89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA----APNGSMFILSTNDKTIKLW-- 142
+++ D L++ + + W +P+GS F+ +++D+TI++W
Sbjct: 861 LAVIALSQYCVELWNID--SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 918
Query: 143 -KVRDQKVKKIKEMDHFPFVSSENTLLAEKN---------------FMNEHNPPSFAHGY 186
KV +K+ F +E +LA N ++ E
Sbjct: 919 KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP 978
Query: 187 HLEWT----ENMATKIANVGNSVHARCQKVYPH--AHDFXXXXXXXXXDCETFV-SADDL 239
HLE+ E+ A KI + N+ +V+ H D +T + S++D
Sbjct: 979 HLEYVAFGDEDGAIKIIELPNN------RVFSSGVGHKKAVRHIQFTADGKTLISSSEDS 1032
Query: 240 RINLWNLEISDQCF 253
I +WN + D F
Sbjct: 1033 VIQVWNWQTGDYVF 1046
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 97 FQSHEPEFDYLKSLEIEE-KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ 147
++ ++ +F+ + +LE E ++ V W AP+G++ + DK++ +W+V ++
Sbjct: 88 WKKNQDDFECVTTLEGHENEVKSVAW--APSGNLLATCSRDKSVWVWEVDEE 137
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR 145
+ + + W APN S + + DKT+K W R
Sbjct: 127 DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
>pdb|3LEC|A Chain A, The Crystal Structure Of A Protein In The Nadb-Rossmann
Superfamily From Streptococcus Agalactiae To 1.8a
Length = 230
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 120 RWCAAPNGSMF---ILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMN 175
+W AA + + IL+ NDK ++ V+ KE+ PF+ S NT + ++ + N
Sbjct: 134 KWLAANDFEIVAEDILTENDKRYEILVVKHGHXNLTAKELRFGPFLLSNNTTVFKEKWQN 193
Query: 176 EHNPPSFA 183
E N +FA
Sbjct: 194 ELNKLTFA 201
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 8/117 (6%)
Query: 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPN--QHISR--SELEKQMDFTS 85
Q + +S++ + K G+YLAVG V L++ K N H +R S +S
Sbjct: 65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSS 124
Query: 86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLW 142
S + + + + E L +++ +RW AP+G ND + +W
Sbjct: 125 GSRSGHIHHHDVRVAEHHVATLSGH--SQEVCGLRW--APDGRHLASGGNDNLVNVW 177
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 125 PNGSMFILSTNDKTIKLWKVR 145
PNG + ++ DKTIK+W+V+
Sbjct: 202 PNGDHIVSASRDKTIKMWEVQ 222
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC-----DHSARILRDAAESHGSKSFFT 324
I + + P Y +LA +S+ V+L D+R+++ C H+ + +S +S T
Sbjct: 189 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK------KSQAVESANT 242
Query: 325 EIIASISDIKFANDGQHLLS 344
++ + F +DG HLL+
Sbjct: 243 AHNGKVNGLCFTSDGLHLLT 262
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 124 APNGSMFILSTNDKTIKLWKVRDQKVKK 151
+PNG S+ DK IK+W D K +K
Sbjct: 35 SPNGEWLAASSADKLIKIWGAYDGKFEK 62
>pdb|3D79|A Chain A, Crystal Structure Of Hypothetical Protein Ph0734.1 From
Hyperthermophilic Archaea Pyrococcus Horikoshii Ot3
Length = 179
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 15 KCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDR 52
+ SQ FGE + L D V EFDKT + + V D+
Sbjct: 27 QLSQMFGEEIARKMLNKKDEVKVAEFDKTTEIILVNDK 64
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 8/117 (6%)
Query: 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPN--QHISR--SELEKQMDFTS 85
Q + +S++ + K G+YLAVG V L++ K N H +R S +S
Sbjct: 145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSS 204
Query: 86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLW 142
S + + + + E L +++ +RW AP+G ND + +W
Sbjct: 205 GSRSGHIHHHDVRVAEHHVATLSGH--SQEVCGLRW--APDGRHLASGGNDNLVNVW 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,097,374
Number of Sequences: 62578
Number of extensions: 463262
Number of successful extensions: 1216
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1121
Number of HSP's gapped (non-prelim): 103
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)