Query 014005
Match_columns 432
No_of_seqs 444 out of 2155
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 00:55:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1354 Serine/threonine prote 100.0 1.3E-44 2.8E-49 300.0 17.6 338 6-404 4-357 (433)
2 KOG0271 Notchless-like WD40 re 100.0 1.9E-42 4E-47 290.8 25.4 291 24-404 107-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 3.6E-43 7.7E-48 298.7 20.0 283 27-404 170-458 (459)
4 KOG0272 U4/U6 small nuclear ri 100.0 7.5E-41 1.6E-45 284.6 16.7 258 9-354 197-458 (459)
5 COG5170 CDC55 Serine/threonine 100.0 2.8E-40 6.2E-45 271.1 15.8 357 12-417 6-385 (460)
6 KOG0271 Notchless-like WD40 re 100.0 2.8E-39 6E-44 271.8 21.3 295 3-354 131-479 (480)
7 KOG0286 G-protein beta subunit 100.0 2.4E-37 5.2E-42 251.5 28.4 283 28-404 51-343 (343)
8 KOG0279 G protein beta subunit 100.0 2.4E-36 5.2E-41 244.2 28.0 292 28-404 11-311 (315)
9 KOG0315 G-protein beta subunit 100.0 7.5E-37 1.6E-41 243.2 23.1 281 3-365 14-300 (311)
10 KOG0285 Pleiotropic regulator 100.0 8.2E-37 1.8E-41 254.9 23.0 303 11-415 138-448 (460)
11 KOG0279 G protein beta subunit 100.0 6.2E-36 1.3E-40 241.8 24.2 274 3-355 32-312 (315)
12 KOG0295 WD40 repeat-containing 100.0 3.2E-36 6.9E-41 251.9 20.8 281 29-404 105-404 (406)
13 KOG0263 Transcription initiati 100.0 7.2E-36 1.6E-40 273.4 22.3 265 32-355 378-648 (707)
14 KOG0273 Beta-transducin family 100.0 7.9E-35 1.7E-39 251.2 26.6 250 28-364 231-493 (524)
15 KOG0286 G-protein beta subunit 100.0 2E-34 4.4E-39 234.5 25.9 244 32-354 97-343 (343)
16 KOG0315 G-protein beta subunit 100.0 2.5E-34 5.4E-39 228.8 25.4 269 45-405 11-287 (311)
17 KOG0265 U5 snRNP-specific prot 100.0 3.8E-33 8.2E-38 228.0 25.3 262 27-366 42-309 (338)
18 KOG0284 Polyadenylation factor 100.0 3.1E-34 6.8E-39 243.3 16.7 278 32-406 96-380 (464)
19 KOG0282 mRNA splicing factor [ 100.0 2.8E-34 6.1E-39 248.7 16.5 290 25-404 207-503 (503)
20 KOG0263 Transcription initiati 100.0 7E-33 1.5E-37 253.9 23.0 249 28-345 447-703 (707)
21 KOG0318 WD40 repeat stress pro 100.0 9.7E-32 2.1E-36 235.2 28.4 300 10-404 176-558 (603)
22 KOG0291 WD40-repeat-containing 100.0 6.3E-32 1.4E-36 245.8 28.0 295 33-412 308-618 (893)
23 KOG0291 WD40-repeat-containing 100.0 6.4E-32 1.4E-36 245.8 27.5 271 24-366 342-625 (893)
24 cd00200 WD40 WD40 domain, foun 100.0 2.7E-31 5.9E-36 236.7 31.3 278 30-404 7-289 (289)
25 KOG0266 WD40 repeat-containing 100.0 9.1E-32 2E-36 252.4 29.4 285 31-405 158-453 (456)
26 KOG0645 WD40 repeat protein [G 100.0 7.7E-31 1.7E-35 211.5 28.0 283 28-404 10-309 (312)
27 KOG0284 Polyadenylation factor 100.0 1.3E-32 2.9E-37 233.5 15.1 243 28-355 134-379 (464)
28 KOG0316 Conserved WD40 repeat- 100.0 3.4E-31 7.3E-36 209.4 21.3 250 30-365 15-269 (307)
29 KOG0283 WD40 repeat-containing 100.0 3.9E-31 8.5E-36 244.4 25.2 273 30-355 265-575 (712)
30 KOG0276 Vesicle coat complex C 100.0 7.8E-31 1.7E-35 234.0 25.9 258 29-370 10-274 (794)
31 KOG0281 Beta-TrCP (transducin 100.0 6.6E-33 1.4E-37 230.8 11.9 296 11-404 177-475 (499)
32 KOG0273 Beta-transducin family 100.0 7.8E-31 1.7E-35 226.7 24.8 296 26-406 172-482 (524)
33 KOG0645 WD40 repeat protein [G 100.0 3.8E-30 8.3E-35 207.5 25.6 245 30-355 59-310 (312)
34 PLN00181 protein SPA1-RELATED; 100.0 1.7E-29 3.6E-34 254.6 35.2 303 27-404 478-791 (793)
35 KOG0285 Pleiotropic regulator 100.0 2.9E-31 6.3E-36 221.8 18.2 248 86-404 136-387 (460)
36 KOG0319 WD40-repeat-containing 100.0 1.4E-30 3E-35 236.7 23.8 285 30-406 321-619 (775)
37 KOG0295 WD40 repeat-containing 100.0 3.5E-31 7.5E-36 221.8 18.3 262 6-355 127-405 (406)
38 KOG0643 Translation initiation 100.0 8.2E-30 1.8E-34 205.2 23.7 263 25-355 3-316 (327)
39 KOG0292 Vesicle coat complex C 100.0 4.3E-30 9.2E-35 237.7 24.2 264 31-371 8-298 (1202)
40 KOG0293 WD40 repeat-containing 100.0 3.1E-30 6.7E-35 219.5 21.3 286 30-406 222-513 (519)
41 KOG0296 Angio-associated migra 100.0 3.9E-29 8.4E-34 209.7 25.3 284 29-404 61-396 (399)
42 KOG0319 WD40-repeat-containing 100.0 1.1E-29 2.3E-34 231.0 22.1 273 9-355 343-618 (775)
43 KOG0266 WD40 repeat-containing 100.0 3.5E-29 7.7E-34 235.0 26.1 243 29-355 200-453 (456)
44 KOG0275 Conserved WD40 repeat- 100.0 3E-30 6.6E-35 213.2 16.0 291 31-404 212-507 (508)
45 KOG0313 Microtubule binding pr 100.0 2.2E-29 4.8E-34 212.2 21.4 291 22-405 95-417 (423)
46 KOG0265 U5 snRNP-specific prot 100.0 4.2E-29 9E-34 204.4 19.9 263 3-353 63-335 (338)
47 KOG0318 WD40 repeat stress pro 100.0 3.2E-28 6.9E-33 213.3 26.2 286 28-355 231-601 (603)
48 KOG0268 Sof1-like rRNA process 100.0 9.5E-30 2.1E-34 213.1 15.8 290 15-405 49-344 (433)
49 KOG0277 Peroxisomal targeting 100.0 1.1E-28 2.5E-33 197.3 20.9 239 114-406 61-309 (311)
50 KOG0292 Vesicle coat complex C 100.0 2.7E-28 5.9E-33 225.8 25.0 267 5-355 27-320 (1202)
51 KOG0296 Angio-associated migra 100.0 6.1E-28 1.3E-32 202.6 24.1 254 11-355 88-397 (399)
52 KOG0276 Vesicle coat complex C 100.0 1.7E-28 3.7E-33 219.2 21.5 237 114-406 14-257 (794)
53 PLN00181 protein SPA1-RELATED; 100.0 1.3E-27 2.7E-32 241.0 30.0 277 6-355 502-792 (793)
54 cd00200 WD40 WD40 domain, foun 100.0 2.2E-27 4.9E-32 211.4 28.4 241 28-354 47-289 (289)
55 KOG0281 Beta-TrCP (transducin 100.0 2.5E-29 5.5E-34 209.6 13.6 259 2-355 210-476 (499)
56 KOG0640 mRNA cleavage stimulat 100.0 3.7E-28 8.1E-33 199.7 19.6 233 29-312 109-345 (430)
57 KOG0313 Microtubule binding pr 100.0 1.3E-27 2.7E-32 201.6 20.6 271 3-355 119-417 (423)
58 PTZ00421 coronin; Provisional 100.0 1.2E-26 2.6E-31 217.0 28.9 270 15-355 5-289 (493)
59 KOG0277 Peroxisomal targeting 100.0 8.1E-28 1.7E-32 192.4 17.0 243 32-355 60-308 (311)
60 KOG1332 Vesicle coat complex C 100.0 1.3E-27 2.8E-32 190.2 17.8 256 29-355 8-285 (299)
61 KOG0293 WD40 repeat-containing 100.0 4.5E-28 9.7E-33 206.4 16.0 263 7-355 244-512 (519)
62 KOG0641 WD40 repeat protein [G 100.0 8.3E-26 1.8E-30 178.0 27.6 266 28-355 28-302 (350)
63 KOG0772 Uncharacterized conser 100.0 4.4E-27 9.5E-32 205.7 22.3 298 25-404 160-485 (641)
64 KOG1446 Histone H3 (Lys4) meth 100.0 4.1E-26 8.9E-31 188.6 26.9 269 31-355 13-302 (311)
65 KOG0316 Conserved WD40 repeat- 100.0 6.1E-27 1.3E-31 185.4 20.8 239 95-405 11-256 (307)
66 KOG0306 WD40-repeat-containing 100.0 1.4E-26 3.1E-31 211.1 25.6 285 26-406 367-664 (888)
67 KOG1407 WD40 repeat protein [F 100.0 2.1E-26 4.5E-31 185.1 23.4 244 27-355 15-260 (313)
68 KOG0278 Serine/threonine kinas 100.0 1.9E-27 4.1E-32 189.9 17.0 256 29-359 11-300 (334)
69 KOG0305 Anaphase promoting com 100.0 1.2E-26 2.6E-31 209.4 23.5 236 32-355 217-460 (484)
70 KOG0289 mRNA splicing factor [ 100.0 7.9E-26 1.7E-30 194.0 25.5 279 31-404 218-504 (506)
71 KOG0306 WD40-repeat-containing 100.0 2E-26 4.3E-31 210.2 22.8 244 33-355 413-663 (888)
72 KOG0300 WD40 repeat-containing 100.0 1.8E-26 3.9E-31 190.5 20.3 294 28-405 144-475 (481)
73 PTZ00421 coronin; Provisional 99.9 2E-25 4.4E-30 208.8 28.6 236 27-338 70-314 (493)
74 KOG0310 Conserved WD40 repeat- 99.9 4.3E-26 9.3E-31 198.5 21.9 239 32-355 68-308 (487)
75 KOG2096 WD40 repeat protein [G 99.9 8.2E-26 1.8E-30 186.7 22.2 287 29-354 83-400 (420)
76 PTZ00420 coronin; Provisional 99.9 5E-25 1.1E-29 207.1 29.8 227 50-406 50-293 (568)
77 KOG0973 Histone transcription 99.9 1.3E-25 2.8E-30 213.3 25.4 263 27-355 64-354 (942)
78 KOG0288 WD40 repeat protein Ti 99.9 7.5E-27 1.6E-31 199.0 14.6 286 25-403 168-458 (459)
79 KOG0264 Nucleosome remodeling 99.9 1E-25 2.3E-30 194.6 21.7 271 29-355 121-403 (422)
80 KOG0282 mRNA splicing factor [ 99.9 6.9E-27 1.5E-31 203.1 14.0 267 3-354 231-503 (503)
81 KOG0647 mRNA export protein (c 99.9 3.8E-25 8.3E-30 181.4 23.1 259 32-365 27-293 (347)
82 KOG0641 WD40 repeat protein [G 99.9 2.3E-24 5E-29 169.9 26.2 250 30-355 87-348 (350)
83 KOG0288 WD40 repeat protein Ti 99.9 3.9E-26 8.4E-31 194.7 17.0 261 7-354 195-459 (459)
84 KOG2445 Nuclear pore complex c 99.9 1.1E-24 2.3E-29 179.3 24.8 281 29-364 10-332 (361)
85 KOG0308 Conserved WD40 repeat- 99.9 4.3E-26 9.3E-31 204.9 17.5 328 4-404 42-391 (735)
86 KOG0305 Anaphase promoting com 99.9 2.9E-25 6.3E-30 200.5 22.9 271 35-405 180-460 (484)
87 KOG0283 WD40 repeat-containing 99.9 1.6E-25 3.5E-30 207.4 21.7 254 114-405 268-575 (712)
88 PTZ00420 coronin; Provisional 99.9 1.6E-24 3.5E-29 203.6 28.1 238 27-339 69-318 (568)
89 KOG0299 U3 snoRNP-associated p 99.9 5.4E-25 1.2E-29 190.3 22.7 266 29-355 139-409 (479)
90 KOG0274 Cdc4 and related F-box 99.9 3.5E-25 7.6E-30 207.4 23.2 248 12-355 231-481 (537)
91 KOG0274 Cdc4 and related F-box 99.9 8E-25 1.7E-29 205.0 24.6 269 31-405 207-481 (537)
92 KOG4283 Transcription-coupled 99.9 2.2E-24 4.7E-29 176.4 23.5 228 29-302 40-280 (397)
93 KOG0639 Transducin-like enhanc 99.9 4.5E-25 9.8E-30 192.6 20.6 287 26-404 413-702 (705)
94 KOG0772 Uncharacterized conser 99.9 3E-25 6.4E-30 194.4 19.3 288 3-353 183-484 (641)
95 KOG0299 U3 snoRNP-associated p 99.9 9.5E-25 2.1E-29 188.8 22.2 238 30-345 200-443 (479)
96 KOG0301 Phospholipase A2-activ 99.9 1.1E-24 2.4E-29 197.3 22.5 274 28-405 10-287 (745)
97 KOG0973 Histone transcription 99.9 3.1E-24 6.8E-29 204.0 25.4 302 29-404 9-353 (942)
98 KOG0289 mRNA splicing factor [ 99.9 3.8E-24 8.3E-29 183.7 23.0 244 30-354 259-504 (506)
99 KOG1036 Mitotic spindle checkp 99.9 1.1E-23 2.4E-28 173.6 24.5 247 32-355 13-261 (323)
100 KOG0275 Conserved WD40 repeat- 99.9 2.4E-25 5.2E-30 184.4 14.8 242 30-354 261-507 (508)
101 KOG1446 Histone H3 (Lys4) meth 99.9 3.9E-23 8.5E-28 171.1 27.6 241 114-404 15-260 (311)
102 KOG0294 WD40 repeat-containing 99.9 4.1E-24 9E-29 176.4 21.4 239 28-355 39-280 (362)
103 KOG0308 Conserved WD40 repeat- 99.9 1.1E-24 2.4E-29 195.9 19.3 252 30-355 19-284 (735)
104 KOG0264 Nucleosome remodeling 99.9 1.8E-24 3.9E-29 187.0 20.0 251 109-405 120-403 (422)
105 KOG0310 Conserved WD40 repeat- 99.9 6E-24 1.3E-28 185.2 23.1 278 28-404 22-307 (487)
106 KOG0278 Serine/threonine kinas 99.9 1.3E-24 2.8E-29 173.7 14.9 209 24-302 92-301 (334)
107 KOG1407 WD40 repeat protein [F 99.9 2.5E-23 5.4E-28 167.5 21.2 230 26-344 58-289 (313)
108 KOG0640 mRNA cleavage stimulat 99.9 1.5E-23 3.3E-28 172.7 20.3 229 95-365 106-347 (430)
109 KOG1274 WD40 repeat protein [G 99.9 4.7E-23 1E-27 192.5 25.1 248 29-356 10-262 (933)
110 KOG2055 WD40 repeat protein [G 99.9 4.3E-23 9.4E-28 178.6 22.3 291 32-404 213-510 (514)
111 KOG0294 WD40 repeat-containing 99.9 2.1E-22 4.6E-27 166.4 24.9 275 46-409 3-284 (362)
112 KOG0268 Sof1-like rRNA process 99.9 2.6E-24 5.6E-29 180.7 13.7 259 3-355 83-344 (433)
113 KOG0267 Microtubule severing p 99.9 7.4E-25 1.6E-29 199.2 10.1 237 29-351 25-262 (825)
114 KOG1273 WD40 repeat protein [G 99.9 2.5E-22 5.5E-27 165.9 23.5 252 35-365 26-292 (405)
115 KOG0300 WD40 repeat-containing 99.9 7.5E-23 1.6E-27 169.2 19.9 276 25-355 183-475 (481)
116 KOG0269 WD40 repeat-containing 99.9 3.4E-23 7.4E-28 189.9 18.5 259 32-365 39-309 (839)
117 KOG1063 RNA polymerase II elon 99.9 1.7E-22 3.7E-27 183.1 22.4 315 27-405 186-647 (764)
118 KOG0647 mRNA export protein (c 99.9 1E-22 2.2E-27 167.3 18.9 260 6-345 47-311 (347)
119 KOG0269 WD40 repeat-containing 99.9 1.4E-23 2.9E-28 192.5 14.4 240 35-352 90-336 (839)
120 KOG1408 WD40 repeat protein [F 99.9 1.2E-22 2.5E-27 184.8 18.9 258 21-355 448-712 (1080)
121 KOG0643 Translation initiation 99.9 1.3E-21 2.8E-26 158.2 22.0 212 96-365 5-232 (327)
122 KOG1036 Mitotic spindle checkp 99.9 1.3E-21 2.9E-26 161.4 20.7 240 26-346 48-293 (323)
123 KOG0646 WD40 repeat protein [G 99.9 5.1E-22 1.1E-26 172.3 19.1 247 32-355 81-349 (476)
124 KOG0639 Transducin-like enhanc 99.9 1.7E-22 3.8E-27 176.6 16.0 257 11-355 442-703 (705)
125 KOG2048 WD40 repeat protein [G 99.9 1.6E-20 3.5E-25 170.1 28.2 247 32-355 25-274 (691)
126 KOG0302 Ribosome Assembly prot 99.9 2.2E-21 4.9E-26 164.0 21.2 228 26-299 145-379 (440)
127 KOG0650 WD40 repeat nucleolar 99.9 3.4E-22 7.3E-27 178.4 16.8 285 20-353 388-732 (733)
128 KOG4328 WD40 protein [Function 99.9 3.1E-21 6.7E-26 167.1 21.8 300 30-405 184-494 (498)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.1E-20 8.9E-25 166.4 28.9 253 29-364 27-290 (300)
130 KOG0301 Phospholipase A2-activ 99.9 3.8E-21 8.2E-26 174.6 21.0 231 30-355 55-287 (745)
131 KOG1332 Vesicle coat complex C 99.9 1.1E-21 2.4E-26 156.5 15.3 217 24-298 48-286 (299)
132 KOG0267 Microtubule severing p 99.9 1.2E-22 2.6E-27 185.0 9.7 201 114-361 29-231 (825)
133 KOG0321 WD40 repeat-containing 99.9 1.1E-20 2.5E-25 169.9 21.6 315 37-423 54-410 (720)
134 KOG0270 WD40 repeat-containing 99.9 6.5E-21 1.4E-25 164.5 19.3 258 35-355 176-448 (463)
135 KOG1539 WD repeat protein [Gen 99.9 2.9E-20 6.3E-25 172.2 23.6 295 26-404 237-646 (910)
136 KOG1408 WD40 repeat protein [F 99.9 1.1E-20 2.3E-25 172.2 20.2 340 12-404 349-711 (1080)
137 KOG4283 Transcription-coupled 99.9 1.8E-20 4E-25 153.6 19.2 222 114-355 44-275 (397)
138 KOG2055 WD40 repeat protein [G 99.9 1.6E-20 3.4E-25 162.9 19.1 249 32-355 257-511 (514)
139 KOG0303 Actin-binding protein 99.9 5.7E-20 1.2E-24 156.5 21.2 287 14-432 9-314 (472)
140 KOG2106 Uncharacterized conser 99.9 2.2E-19 4.8E-24 157.5 24.5 314 29-404 284-624 (626)
141 KOG4378 Nuclear protein COP1 [ 99.9 2.9E-20 6.2E-25 162.7 18.1 273 11-366 14-294 (673)
142 KOG1063 RNA polymerase II elon 99.9 5.4E-20 1.2E-24 167.1 20.0 330 26-404 261-697 (764)
143 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.8E-18 3.9E-23 155.6 30.2 269 44-406 1-279 (300)
144 KOG0302 Ribosome Assembly prot 99.9 5.7E-20 1.2E-24 155.6 18.4 207 114-355 152-377 (440)
145 KOG4328 WD40 protein [Function 99.9 9.5E-20 2.1E-24 157.9 20.2 257 114-412 187-457 (498)
146 KOG1007 WD repeat protein TSSC 99.9 2.2E-19 4.8E-24 146.9 20.4 273 30-355 61-360 (370)
147 KOG0646 WD40 repeat protein [G 99.8 2E-19 4.2E-24 156.4 20.1 222 112-362 80-316 (476)
148 KOG2106 Uncharacterized conser 99.8 1.7E-18 3.8E-23 151.9 25.9 271 30-405 244-520 (626)
149 KOG0307 Vesicle coat complex C 99.8 1.6E-20 3.4E-25 179.9 14.1 254 26-355 58-326 (1049)
150 KOG4378 Nuclear protein COP1 [ 99.8 5.7E-19 1.2E-23 154.6 21.4 258 114-427 35-308 (673)
151 KOG1445 Tumor-specific antigen 99.8 1.6E-19 3.4E-24 162.6 17.1 105 232-355 642-749 (1012)
152 KOG2919 Guanine nucleotide-bin 99.8 9.7E-19 2.1E-23 145.4 19.5 264 34-405 51-326 (406)
153 KOG1517 Guanine nucleotide bin 99.8 1.7E-18 3.7E-23 164.4 23.0 301 34-404 1066-1379(1387)
154 KOG0270 WD40 repeat-containing 99.8 6E-18 1.3E-22 146.4 22.8 255 114-405 174-448 (463)
155 KOG1274 WD40 repeat protein [G 99.8 3.5E-18 7.5E-23 160.3 23.0 244 114-406 14-262 (933)
156 KOG0321 WD40 repeat-containing 99.8 9.6E-19 2.1E-23 157.7 18.3 271 22-355 90-390 (720)
157 KOG1539 WD repeat protein [Gen 99.8 2.3E-17 4.9E-22 153.3 27.7 304 30-404 200-604 (910)
158 KOG1007 WD repeat protein TSSC 99.8 1.9E-18 4E-23 141.6 18.0 212 114-355 64-288 (370)
159 KOG2096 WD40 repeat protein [G 99.8 2.8E-18 6E-23 142.4 19.2 212 95-355 80-307 (420)
160 KOG1538 Uncharacterized conser 99.8 4.2E-18 9.2E-23 154.4 21.5 248 34-355 14-292 (1081)
161 KOG2048 WD40 repeat protein [G 99.8 1.6E-17 3.5E-22 150.9 23.8 243 114-404 26-273 (691)
162 KOG2919 Guanine nucleotide-bin 99.8 5.1E-18 1.1E-22 141.2 18.3 240 32-347 104-360 (406)
163 KOG1034 Transcriptional repres 99.8 1.2E-17 2.6E-22 139.3 19.9 317 11-404 24-381 (385)
164 KOG2445 Nuclear pore complex c 99.8 7.1E-18 1.5E-22 139.4 18.4 236 29-299 56-319 (361)
165 KOG0649 WD40 repeat protein [G 99.8 8.4E-17 1.8E-21 128.8 22.9 230 34-365 12-247 (325)
166 KOG0644 Uncharacterized conser 99.8 4.1E-19 8.8E-24 164.6 11.0 244 27-355 185-467 (1113)
167 KOG1188 WD40 repeat protein [G 99.8 7.5E-18 1.6E-22 141.2 17.2 193 45-355 41-241 (376)
168 KOG0650 WD40 repeat nucleolar 99.8 1.2E-17 2.5E-22 149.7 18.9 246 91-405 390-679 (733)
169 KOG0642 Cell-cycle nuclear pro 99.8 2.5E-18 5.4E-23 153.1 14.0 260 27-355 289-560 (577)
170 KOG0322 G-protein beta subunit 99.8 7.6E-18 1.6E-22 136.3 14.7 258 30-355 12-322 (323)
171 KOG1587 Cytoplasmic dynein int 99.8 5.9E-17 1.3E-21 151.2 22.8 283 11-355 224-515 (555)
172 KOG1009 Chromatin assembly com 99.8 1.3E-16 2.8E-21 136.8 22.7 166 32-246 13-194 (434)
173 KOG0303 Actin-binding protein 99.8 2.6E-17 5.7E-22 140.4 18.4 239 26-338 75-320 (472)
174 KOG4227 WD40 repeat protein [G 99.8 8E-17 1.7E-21 137.4 20.0 266 28-355 52-321 (609)
175 KOG1445 Tumor-specific antigen 99.8 1.5E-17 3.2E-22 150.0 15.6 203 114-404 628-842 (1012)
176 KOG2110 Uncharacterized conser 99.8 9.1E-16 2E-20 130.2 25.3 234 32-355 5-247 (391)
177 KOG1034 Transcriptional repres 99.8 2E-17 4.3E-22 138.0 14.8 255 30-355 87-382 (385)
178 KOG0307 Vesicle coat complex C 99.8 3.1E-18 6.7E-23 164.4 11.2 213 29-301 113-330 (1049)
179 KOG1273 WD40 repeat protein [G 99.8 7.6E-16 1.7E-20 127.9 23.0 272 9-355 45-321 (405)
180 KOG0290 Conserved WD40 repeat- 99.7 3.6E-16 7.9E-21 128.4 18.9 210 27-353 145-362 (364)
181 KOG1523 Actin-related protein 99.7 8.5E-16 1.8E-20 128.0 20.8 213 32-301 10-239 (361)
182 KOG0771 Prolactin regulatory e 99.7 1.1E-16 2.5E-21 138.0 16.0 203 36-299 148-355 (398)
183 PRK11028 6-phosphogluconolacto 99.7 6.1E-15 1.3E-19 134.3 27.9 279 8-355 11-303 (330)
184 KOG1963 WD40 repeat protein [G 99.7 3.8E-15 8.2E-20 139.8 23.4 265 28-355 201-537 (792)
185 PRK11028 6-phosphogluconolacto 99.7 6.8E-14 1.5E-18 127.4 30.4 213 114-355 35-257 (330)
186 KOG0290 Conserved WD40 repeat- 99.7 4.3E-15 9.3E-20 122.2 19.9 208 114-355 97-317 (364)
187 KOG1310 WD40 repeat protein [G 99.7 6.5E-16 1.4E-20 137.4 16.1 237 24-355 42-302 (758)
188 KOG1009 Chromatin assembly com 99.7 1.7E-15 3.8E-20 129.9 18.0 258 4-302 31-376 (434)
189 KOG1240 Protein kinase contain 99.7 1.8E-14 3.9E-19 139.6 25.7 284 9-355 1029-1333(1431)
190 PRK01742 tolB translocation pr 99.7 3.9E-15 8.4E-20 139.8 21.0 201 114-365 204-415 (429)
191 KOG1272 WD40-repeat-containing 99.7 1.4E-16 2.9E-21 138.9 9.7 229 35-355 132-361 (545)
192 COG2319 FOG: WD40 repeat [Gene 99.7 5.7E-14 1.2E-18 132.5 28.5 246 28-355 61-313 (466)
193 KOG1587 Cytoplasmic dynein int 99.7 1.8E-14 4E-19 134.7 23.4 252 114-406 243-516 (555)
194 KOG1524 WD40 repeat-containing 99.7 2.4E-15 5.1E-20 133.5 16.0 251 30-355 12-285 (737)
195 KOG2321 WD40 repeat protein [G 99.7 3.4E-14 7.4E-19 127.3 22.1 248 26-355 45-301 (703)
196 KOG4227 WD40 repeat protein [G 99.7 6E-15 1.3E-19 126.1 16.3 250 114-404 57-320 (609)
197 KOG4497 Uncharacterized conser 99.7 2.8E-14 6.1E-19 119.4 19.9 254 37-355 13-349 (447)
198 KOG2111 Uncharacterized conser 99.6 7E-14 1.5E-18 116.7 21.6 236 34-355 7-255 (346)
199 PRK01742 tolB translocation pr 99.6 1.4E-14 3E-19 136.1 19.8 218 29-338 200-426 (429)
200 KOG1538 Uncharacterized conser 99.6 2.3E-14 4.9E-19 130.6 19.5 232 29-299 50-294 (1081)
201 KOG1334 WD40 repeat protein [G 99.6 6.7E-15 1.5E-19 129.2 15.4 303 26-405 136-465 (559)
202 KOG1517 Guanine nucleotide bin 99.6 2.9E-14 6.3E-19 136.2 20.3 260 33-355 1110-1380(1387)
203 KOG1963 WD40 repeat protein [G 99.6 7.5E-14 1.6E-18 131.2 22.7 251 38-355 22-321 (792)
204 KOG0771 Prolactin regulatory e 99.6 7E-15 1.5E-19 127.1 14.0 198 117-355 148-353 (398)
205 COG2319 FOG: WD40 repeat [Gene 99.6 5.6E-13 1.2E-17 125.7 28.5 236 34-355 111-358 (466)
206 KOG0642 Cell-cycle nuclear pro 99.6 9.3E-15 2E-19 130.6 14.3 215 28-299 340-562 (577)
207 KOG1523 Actin-related protein 99.6 7.4E-14 1.6E-18 116.5 17.5 213 114-355 11-235 (361)
208 KOG2394 WD40 protein DMR-N9 [G 99.6 1.7E-13 3.7E-18 121.9 18.0 162 114-337 220-384 (636)
209 PF08662 eIF2A: Eukaryotic tra 99.6 1.9E-13 4.2E-18 113.0 17.1 155 175-362 10-187 (194)
210 KOG0649 WD40 repeat protein [G 99.6 5.7E-12 1.2E-16 101.5 24.5 217 22-355 52-273 (325)
211 PRK03629 tolB translocation pr 99.6 2.2E-12 4.9E-17 120.9 25.6 201 114-364 199-416 (429)
212 KOG0322 G-protein beta subunit 99.6 1.4E-13 3.1E-18 111.8 14.9 249 30-297 54-322 (323)
213 KOG0644 Uncharacterized conser 99.6 2.6E-14 5.7E-19 133.2 11.7 206 114-364 191-437 (1113)
214 PRK02889 tolB translocation pr 99.5 1.2E-12 2.7E-17 122.8 22.3 184 114-345 196-388 (427)
215 KOG2110 Uncharacterized conser 99.5 4E-12 8.6E-17 108.4 22.8 160 114-300 88-250 (391)
216 PRK04922 tolB translocation pr 99.5 2.4E-12 5.3E-17 121.2 22.8 192 114-355 204-410 (433)
217 KOG3881 Uncharacterized conser 99.5 2E-12 4.3E-17 111.0 19.8 251 29-355 52-319 (412)
218 PRK03629 tolB translocation pr 99.5 2.9E-12 6.3E-17 120.1 22.6 219 30-337 196-427 (429)
219 PRK05137 tolB translocation pr 99.5 7.6E-12 1.7E-16 118.0 25.4 192 114-355 202-411 (435)
220 KOG2139 WD40 repeat protein [G 99.5 1.6E-12 3.5E-17 110.4 18.2 204 34-355 100-308 (445)
221 KOG1240 Protein kinase contain 99.5 2.3E-12 5E-17 125.3 21.5 230 87-404 1034-1271(1431)
222 KOG1524 WD40 repeat-containing 99.5 2.7E-13 5.9E-18 120.6 13.4 185 26-294 98-282 (737)
223 PRK05137 tolB translocation pr 99.5 6.7E-12 1.5E-16 118.4 22.9 201 29-301 198-415 (435)
224 KOG1272 WD40-repeat-containing 99.5 2.6E-13 5.7E-18 118.7 12.0 190 115-355 131-322 (545)
225 KOG1188 WD40 repeat protein [G 99.5 1.2E-12 2.6E-17 110.4 15.3 257 31-355 69-345 (376)
226 PRK04922 tolB translocation pr 99.5 5.4E-12 1.2E-16 118.9 21.5 218 29-337 200-432 (433)
227 KOG1334 WD40 repeat protein [G 99.5 8.8E-13 1.9E-17 116.1 13.4 266 94-406 135-424 (559)
228 KOG2139 WD40 repeat protein [G 99.5 2.5E-11 5.4E-16 103.3 20.5 261 32-355 140-430 (445)
229 PRK02889 tolB translocation pr 99.5 1.6E-11 3.5E-16 115.3 21.8 221 29-338 192-425 (427)
230 KOG2394 WD40 protein DMR-N9 [G 99.4 2E-12 4.2E-17 115.3 14.0 176 14-277 205-384 (636)
231 KOG3881 Uncharacterized conser 99.4 1.4E-11 3E-16 105.9 17.9 203 45-302 116-324 (412)
232 PF10282 Lactonase: Lactonase, 99.4 9.7E-10 2.1E-14 100.3 31.2 269 32-355 36-321 (345)
233 KOG1310 WD40 repeat protein [G 99.4 8E-13 1.7E-17 118.0 10.1 180 95-355 44-230 (758)
234 COG2706 3-carboxymuconate cycl 99.4 1.4E-09 3E-14 93.3 28.8 255 114-404 40-319 (346)
235 KOG4547 WD40 repeat-containing 99.4 6.8E-11 1.5E-15 107.0 21.3 132 193-355 79-219 (541)
236 PF08662 eIF2A: Eukaryotic tra 99.4 1.8E-11 4E-16 101.2 16.5 154 117-302 9-182 (194)
237 PF02239 Cytochrom_D1: Cytochr 99.4 3.7E-10 8E-15 103.0 25.7 254 37-362 41-356 (369)
238 KOG4497 Uncharacterized conser 99.4 1.5E-10 3.2E-15 97.5 21.0 244 33-355 49-390 (447)
239 TIGR02800 propeller_TolB tol-p 99.4 1.7E-10 3.6E-15 108.9 23.4 192 114-355 190-396 (417)
240 PF02239 Cytochrom_D1: Cytochr 99.4 2.1E-09 4.6E-14 98.0 29.4 189 47-302 9-206 (369)
241 PRK01029 tolB translocation pr 99.3 8.1E-10 1.8E-14 103.4 25.2 199 114-355 185-402 (428)
242 KOG1064 RAVE (regulator of V-A 99.3 1.3E-11 2.8E-16 124.4 12.4 251 9-348 2185-2438(2439)
243 PRK00178 tolB translocation pr 99.3 5.3E-10 1.1E-14 105.7 22.6 199 29-299 195-407 (430)
244 PRK00178 tolB translocation pr 99.3 8.7E-10 1.9E-14 104.3 23.9 192 114-355 199-405 (430)
245 TIGR02800 propeller_TolB tol-p 99.3 4.9E-10 1.1E-14 105.8 21.9 198 29-298 186-397 (417)
246 KOG2111 Uncharacterized conser 99.3 1.4E-09 3.1E-14 91.3 21.6 241 114-405 6-255 (346)
247 PRK04792 tolB translocation pr 99.3 9.1E-10 2E-14 103.9 23.2 191 114-355 218-424 (448)
248 PF10282 Lactonase: Lactonase, 99.3 2.6E-08 5.6E-13 91.0 31.6 257 114-404 37-320 (345)
249 COG2706 3-carboxymuconate cycl 99.3 1.5E-08 3.2E-13 87.2 27.6 289 8-355 15-320 (346)
250 PRK04792 tolB translocation pr 99.3 4.9E-10 1.1E-14 105.6 20.9 219 29-337 214-446 (448)
251 KOG2315 Predicted translation 99.3 9E-09 1.9E-13 93.0 26.7 276 32-404 34-388 (566)
252 KOG1409 Uncharacterized conser 99.3 9.1E-10 2E-14 93.4 19.3 204 31-299 67-271 (404)
253 PRK01029 tolB translocation pr 99.3 1.9E-09 4.1E-14 100.9 23.1 223 32-339 184-426 (428)
254 KOG2041 WD40 repeat protein [G 99.3 1.7E-10 3.6E-15 106.7 15.5 271 30-366 12-309 (1189)
255 KOG2315 Predicted translation 99.3 2.2E-09 4.8E-14 96.8 21.4 233 36-355 129-389 (566)
256 KOG1354 Serine/threonine prote 99.2 1E-09 2.2E-14 93.1 17.1 296 30-354 82-432 (433)
257 KOG0974 WD-repeat protein WDR6 99.2 5.1E-10 1.1E-14 107.8 17.1 114 215-355 172-287 (967)
258 KOG2321 WD40 repeat protein [G 99.2 1.3E-09 2.9E-14 98.4 16.4 164 114-355 176-342 (703)
259 KOG1064 RAVE (regulator of V-A 99.2 3.6E-10 7.7E-15 114.3 12.7 184 114-355 2209-2397(2439)
260 KOG4532 WD40-like repeat conta 99.1 1.3E-08 2.7E-13 83.7 19.2 199 129-355 130-330 (344)
261 TIGR02658 TTQ_MADH_Hv methylam 99.1 1E-07 2.2E-12 85.2 26.7 249 40-361 53-338 (352)
262 KOG0309 Conserved WD40 repeat- 99.1 3.5E-10 7.6E-15 105.0 10.9 209 108-355 19-231 (1081)
263 KOG0974 WD-repeat protein WDR6 99.1 8.4E-10 1.8E-14 106.3 13.7 148 39-299 140-289 (967)
264 KOG0280 Uncharacterized conser 99.1 6E-09 1.3E-13 86.7 15.9 207 114-355 70-283 (339)
265 COG4946 Uncharacterized protei 99.1 6.4E-08 1.4E-12 85.9 23.0 118 114-254 360-483 (668)
266 KOG0280 Uncharacterized conser 99.1 4E-09 8.6E-14 87.7 14.1 200 35-353 124-330 (339)
267 KOG4714 Nucleoporin [Nuclear s 99.1 1.9E-09 4.1E-14 88.1 10.8 202 126-354 100-316 (319)
268 COG5354 Uncharacterized protei 99.1 6.4E-08 1.4E-12 86.6 21.1 234 34-355 73-347 (561)
269 KOG4190 Uncharacterized conser 99.0 1.2E-09 2.5E-14 98.4 9.4 177 94-355 728-905 (1034)
270 KOG0882 Cyclophilin-related pe 99.0 6.5E-09 1.4E-13 91.4 13.4 269 29-355 6-304 (558)
271 PF04762 IKI3: IKI3 family; I 99.0 3.3E-07 7.1E-12 93.1 27.6 292 32-355 120-455 (928)
272 PRK04043 tolB translocation pr 99.0 2E-07 4.4E-12 86.8 24.3 102 223-355 281-399 (419)
273 PLN02919 haloacid dehalogenase 99.0 2.7E-07 6E-12 95.4 27.4 225 115-355 625-887 (1057)
274 KOG3914 WD repeat protein WDR4 99.0 4.9E-09 1.1E-13 91.0 12.1 158 117-302 66-227 (390)
275 KOG4547 WD40 repeat-containing 99.0 5.5E-08 1.2E-12 88.6 18.6 179 125-366 3-185 (541)
276 COG4946 Uncharacterized protei 99.0 1.2E-07 2.7E-12 84.2 19.4 170 125-344 330-505 (668)
277 KOG4190 Uncharacterized conser 99.0 3.8E-09 8.3E-14 95.2 9.8 214 30-301 733-951 (1034)
278 KOG2314 Translation initiation 98.9 1.2E-06 2.7E-11 79.4 24.6 245 29-355 247-524 (698)
279 PF04762 IKI3: IKI3 family; I 98.9 1.3E-06 2.8E-11 88.8 27.8 254 31-355 74-378 (928)
280 KOG1409 Uncharacterized conser 98.9 1.7E-07 3.8E-12 79.9 16.3 242 30-355 22-269 (404)
281 PF15492 Nbas_N: Neuroblastoma 98.9 4.1E-06 8.9E-11 70.3 23.6 220 38-355 3-258 (282)
282 KOG2041 WD40 repeat protein [G 98.8 9.6E-07 2.1E-11 82.5 20.2 242 30-355 69-336 (1189)
283 KOG2695 WD40 repeat protein [G 98.8 2E-08 4.2E-13 85.5 8.3 160 120-312 218-386 (425)
284 PF07433 DUF1513: Protein of u 98.8 6.8E-06 1.5E-10 71.1 23.3 242 34-353 6-282 (305)
285 KOG4532 WD40-like repeat conta 98.8 2.1E-06 4.6E-11 71.0 19.1 190 128-355 85-281 (344)
286 KOG0309 Conserved WD40 repeat- 98.8 5.8E-08 1.3E-12 90.7 11.0 209 30-299 22-233 (1081)
287 PF08450 SGL: SMP-30/Gluconola 98.7 6.9E-05 1.5E-09 65.1 27.6 223 37-342 4-240 (246)
288 KOG3914 WD repeat protein WDR4 98.7 5.3E-07 1.2E-11 78.6 13.7 159 175-365 67-235 (390)
289 KOG1832 HIV-1 Vpr-binding prot 98.7 3E-08 6.6E-13 94.3 6.0 215 30-344 1099-1318(1516)
290 PLN02919 haloacid dehalogenase 98.7 9E-06 2E-10 84.4 24.2 236 34-302 625-892 (1057)
291 PF15492 Nbas_N: Neuroblastoma 98.6 5.9E-06 1.3E-10 69.4 17.8 199 35-302 46-263 (282)
292 COG5354 Uncharacterized protei 98.6 7.2E-06 1.6E-10 73.9 19.3 194 114-355 174-394 (561)
293 KOG1912 WD40 repeat protein [G 98.6 2.5E-05 5.5E-10 74.0 23.0 101 232-355 439-550 (1062)
294 PF00400 WD40: WD domain, G-be 98.6 2.1E-07 4.5E-12 54.8 6.2 38 92-143 2-39 (39)
295 KOG1645 RING-finger-containing 98.6 2.4E-06 5.3E-11 74.6 14.9 251 29-355 190-460 (463)
296 PF00400 WD40: WD domain, G-be 98.6 2.7E-07 5.9E-12 54.3 6.1 32 264-296 8-39 (39)
297 KOG4714 Nucleoporin [Nuclear s 98.6 1.3E-06 2.8E-11 71.9 11.5 144 183-355 102-253 (319)
298 KOG2314 Translation initiation 98.6 3.3E-05 7.2E-10 70.5 21.5 232 36-355 214-477 (698)
299 TIGR02658 TTQ_MADH_Hv methylam 98.6 0.00055 1.2E-08 61.6 29.3 217 124-363 54-297 (352)
300 KOG2066 Vacuolar assembly/sort 98.5 2.9E-06 6.4E-11 80.5 14.9 198 26-300 33-235 (846)
301 KOG2114 Vacuolar assembly/sort 98.5 1.9E-05 4.1E-10 75.7 19.6 232 13-303 5-248 (933)
302 KOG1832 HIV-1 Vpr-binding prot 98.5 1.3E-07 2.9E-12 90.1 5.3 188 114-355 1102-1290(1516)
303 KOG1920 IkappaB kinase complex 98.5 9.1E-05 2E-09 74.0 24.6 240 33-355 69-321 (1265)
304 TIGR03300 assembly_YfgL outer 98.4 0.0003 6.4E-09 65.5 25.7 258 44-406 65-338 (377)
305 COG5170 CDC55 Serine/threonine 98.4 9.1E-06 2E-10 68.7 12.4 173 114-298 173-367 (460)
306 PF07433 DUF1513: Protein of u 98.3 0.00058 1.3E-08 59.4 23.2 212 114-355 5-246 (305)
307 PF11768 DUF3312: Protein of u 98.3 7.4E-05 1.6E-09 69.2 17.5 127 196-340 238-370 (545)
308 KOG2695 WD40 repeat protein [G 98.3 6E-06 1.3E-10 70.8 9.5 125 114-256 253-384 (425)
309 KOG1275 PAB-dependent poly(A) 98.3 1.2E-05 2.7E-10 77.4 12.5 185 126-355 146-341 (1118)
310 PF08450 SGL: SMP-30/Gluconola 98.3 0.00079 1.7E-08 58.5 22.7 201 118-364 4-223 (246)
311 PRK04043 tolB translocation pr 98.2 0.00034 7.4E-09 65.5 21.0 106 220-355 234-356 (419)
312 PF08596 Lgl_C: Lethal giant l 98.2 0.0013 2.8E-08 60.7 23.4 276 34-355 3-334 (395)
313 KOG1920 IkappaB kinase complex 98.2 0.00021 4.6E-09 71.4 19.1 194 32-247 109-322 (1265)
314 PF06977 SdiA-regulated: SdiA- 98.2 0.0011 2.3E-08 56.8 20.7 214 114-353 22-247 (248)
315 KOG1912 WD40 repeat protein [G 98.1 0.00045 9.7E-09 66.0 19.1 225 34-368 17-275 (1062)
316 TIGR03300 assembly_YfgL outer 98.1 0.00097 2.1E-08 62.1 21.0 182 128-353 191-376 (377)
317 KOG1008 Uncharacterized conser 98.1 2.7E-06 5.8E-11 78.8 3.4 211 31-299 55-276 (783)
318 PF11768 DUF3312: Protein of u 98.1 1.4E-05 3E-10 73.9 7.9 81 25-148 252-332 (545)
319 KOG0882 Cyclophilin-related pe 98.0 0.0001 2.3E-09 65.6 11.4 213 114-355 10-230 (558)
320 PF04053 Coatomer_WDAD: Coatom 98.0 0.0011 2.3E-08 62.1 18.3 100 221-355 71-172 (443)
321 KOG2066 Vacuolar assembly/sort 97.9 0.00033 7.1E-09 67.1 14.2 187 114-355 40-232 (846)
322 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.003 6.5E-08 58.1 20.1 259 32-344 42-344 (353)
323 PF13360 PQQ_2: PQQ-like domai 97.9 0.0054 1.2E-07 52.9 20.8 186 126-355 35-229 (238)
324 KOG2114 Vacuolar assembly/sort 97.9 0.0029 6.4E-08 61.4 19.6 196 124-355 32-242 (933)
325 KOG1275 PAB-dependent poly(A) 97.9 0.00036 7.9E-09 67.8 13.4 152 115-298 179-342 (1118)
326 COG0823 TolB Periplasmic compo 97.8 0.0013 2.9E-08 61.2 16.8 185 114-345 193-387 (425)
327 KOG1008 Uncharacterized conser 97.8 1.3E-05 2.9E-10 74.3 3.2 208 114-355 57-274 (783)
328 PF13360 PQQ_2: PQQ-like domai 97.8 0.007 1.5E-07 52.2 19.8 188 43-302 35-234 (238)
329 PRK02888 nitrous-oxide reducta 97.8 0.0044 9.6E-08 59.3 19.0 113 179-299 285-405 (635)
330 PF08553 VID27: VID27 cytoplas 97.7 0.0019 4.1E-08 64.0 15.7 137 193-355 503-646 (794)
331 PF04841 Vps16_N: Vps16, N-ter 97.6 0.067 1.4E-06 50.1 26.0 37 328-364 217-257 (410)
332 KOG3621 WD40 repeat-containing 97.6 0.00066 1.4E-08 64.2 10.4 120 217-355 32-153 (726)
333 KOG1645 RING-finger-containing 97.5 0.00033 7.1E-09 61.7 7.5 82 210-301 186-269 (463)
334 PF04053 Coatomer_WDAD: Coatom 97.5 0.032 6.9E-07 52.4 20.5 216 34-355 34-261 (443)
335 PRK11138 outer membrane biogen 97.5 0.077 1.7E-06 49.7 23.4 60 230-302 256-316 (394)
336 KOG4640 Anaphase-promoting com 97.5 0.00077 1.7E-08 63.0 9.3 75 218-302 20-96 (665)
337 KOG2395 Protein involved in va 97.5 0.015 3.3E-07 53.7 17.0 131 194-355 356-499 (644)
338 COG0823 TolB Periplasmic compo 97.4 0.0035 7.6E-08 58.5 12.7 144 171-346 193-344 (425)
339 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.025 5.5E-07 41.1 14.1 65 35-144 2-70 (111)
340 COG3490 Uncharacterized protei 97.4 0.01 2.3E-07 50.3 13.8 85 217-302 224-314 (366)
341 KOG3617 WD40 and TPR repeat-co 97.3 0.00049 1.1E-08 66.4 6.7 110 174-298 19-131 (1416)
342 smart00320 WD40 WD40 repeats. 97.3 0.0008 1.7E-08 38.4 5.3 37 93-143 4-40 (40)
343 PF06977 SdiA-regulated: SdiA- 97.3 0.093 2E-06 45.1 21.0 208 33-295 22-247 (248)
344 PRK02888 nitrous-oxide reducta 97.3 0.027 5.9E-07 54.1 17.6 59 277-355 286-350 (635)
345 KOG3621 WD40 repeat-containing 97.3 0.0027 5.8E-08 60.3 10.7 78 31-148 32-109 (726)
346 smart00320 WD40 WD40 repeats. 97.2 0.00099 2.1E-08 38.0 5.2 32 264-296 9-40 (40)
347 PRK11138 outer membrane biogen 97.2 0.14 3E-06 48.0 21.7 149 128-302 206-357 (394)
348 KOG3617 WD40 and TPR repeat-co 97.2 0.00075 1.6E-08 65.2 6.1 105 223-355 20-130 (1416)
349 PF00930 DPPIV_N: Dipeptidyl p 97.2 0.16 3.4E-06 46.8 21.3 213 114-355 43-312 (353)
350 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.052 1.1E-06 39.5 14.3 65 218-294 42-110 (111)
351 PF08553 VID27: VID27 cytoplas 97.1 0.034 7.4E-07 55.4 17.2 71 217-298 576-647 (794)
352 PF02897 Peptidase_S9_N: Proly 97.1 0.25 5.3E-06 46.7 27.1 241 34-355 125-403 (414)
353 KOG4640 Anaphase-promoting com 97.1 0.0022 4.8E-08 60.0 8.2 75 32-148 20-95 (665)
354 PF03178 CPSF_A: CPSF A subuni 97.1 0.058 1.3E-06 48.9 17.1 149 182-355 42-201 (321)
355 PF14583 Pectate_lyase22: Olig 97.0 0.26 5.7E-06 44.7 21.9 182 124-347 89-303 (386)
356 PF08596 Lgl_C: Lethal giant l 97.0 0.049 1.1E-06 50.4 15.8 156 115-298 3-173 (395)
357 PF06433 Me-amine-dh_H: Methyl 96.9 0.28 6E-06 43.7 23.8 86 117-213 39-134 (342)
358 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0032 7E-08 38.1 5.1 32 32-63 11-42 (47)
359 PF06433 Me-amine-dh_H: Methyl 96.8 0.36 7.9E-06 43.0 22.2 207 37-312 99-330 (342)
360 PF03178 CPSF_A: CPSF A subuni 96.6 0.18 3.9E-06 45.7 16.5 145 127-298 42-202 (321)
361 COG3386 Gluconolactonase [Carb 96.5 0.54 1.2E-05 42.0 22.1 148 171-342 111-270 (307)
362 PRK13616 lipoprotein LpqB; Pro 96.4 0.4 8.7E-06 47.1 18.3 113 171-294 448-564 (591)
363 KOG4649 PQQ (pyrrolo-quinoline 96.4 0.51 1.1E-05 39.9 21.0 65 44-149 63-127 (354)
364 PF12894 Apc4_WD40: Anaphase-p 96.2 0.021 4.5E-07 34.6 5.3 31 114-146 12-42 (47)
365 PF14583 Pectate_lyase22: Olig 96.2 0.94 2E-05 41.3 21.3 183 138-354 169-379 (386)
366 COG3204 Uncharacterized protei 96.0 0.89 1.9E-05 39.4 18.5 181 171-366 86-275 (316)
367 COG3391 Uncharacterized conser 96.0 1.3 2.8E-05 41.3 21.8 199 36-302 77-287 (381)
368 KOG2079 Vacuolar assembly/sort 96.0 0.033 7.2E-07 55.9 8.3 103 229-355 98-202 (1206)
369 KOG2444 WD40 repeat protein [G 95.9 0.032 7E-07 45.9 6.7 105 229-358 69-179 (238)
370 KOG2395 Protein involved in va 95.8 0.3 6.5E-06 45.6 13.1 69 219-298 431-500 (644)
371 PF05096 Glu_cyclase_2: Glutam 95.8 1.1 2.4E-05 38.6 16.4 199 114-346 45-250 (264)
372 COG3391 Uncharacterized conser 95.8 1.7 3.7E-05 40.5 22.2 195 118-355 78-282 (381)
373 PF12234 Rav1p_C: RAVE protein 95.7 0.25 5.4E-06 48.2 13.1 90 9-144 14-103 (631)
374 PF15390 DUF4613: Domain of un 95.6 0.71 1.5E-05 43.9 14.8 152 172-355 21-185 (671)
375 COG3386 Gluconolactonase [Carb 95.5 1.7 3.7E-05 38.8 20.8 127 219-365 111-254 (307)
376 KOG2079 Vacuolar assembly/sort 95.4 0.067 1.5E-06 53.8 8.2 37 31-67 129-165 (1206)
377 PF10313 DUF2415: Uncharacteri 95.3 0.076 1.7E-06 31.1 5.0 32 268-299 1-34 (43)
378 PF12234 Rav1p_C: RAVE protein 95.3 1.2 2.7E-05 43.5 16.0 117 219-355 30-155 (631)
379 PRK13616 lipoprotein LpqB; Pro 95.2 1.7 3.6E-05 42.9 17.1 165 171-355 350-524 (591)
380 COG3490 Uncharacterized protei 95.2 1.3 2.8E-05 38.2 13.9 148 175-346 72-244 (366)
381 PF00780 CNH: CNH domain; Int 95.2 2.1 4.5E-05 37.7 26.4 249 42-365 5-267 (275)
382 PF15390 DUF4613: Domain of un 94.9 1.1 2.5E-05 42.6 14.0 153 114-298 20-186 (671)
383 cd00216 PQQ_DH Dehydrogenases 94.9 4 8.7E-05 39.5 27.3 24 128-151 111-134 (488)
384 COG3204 Uncharacterized protei 94.7 2.7 5.8E-05 36.6 19.4 169 114-298 86-263 (316)
385 PF10168 Nup88: Nuclear pore c 94.6 1.4 3.1E-05 44.3 15.0 92 268-362 85-189 (717)
386 PHA02713 hypothetical protein; 94.4 2 4.3E-05 42.3 15.3 30 126-155 351-385 (557)
387 PF10168 Nup88: Nuclear pore c 94.3 6.8 0.00015 39.6 19.2 34 114-147 147-181 (717)
388 PF10313 DUF2415: Uncharacteri 94.2 0.2 4.2E-06 29.4 4.9 31 33-63 1-34 (43)
389 KOG4649 PQQ (pyrrolo-quinoline 94.1 3.3 7.1E-05 35.3 23.0 140 44-247 23-165 (354)
390 PF02897 Peptidase_S9_N: Proly 94.0 5.5 0.00012 37.6 23.1 113 118-247 128-260 (414)
391 PF05694 SBP56: 56kDa selenium 94.0 5.2 0.00011 37.2 22.1 105 193-301 221-345 (461)
392 KOG2444 WD40 repeat protein [G 94.0 0.17 3.6E-06 41.9 5.9 104 182-299 70-178 (238)
393 PF10647 Gmad1: Lipoprotein Lp 93.9 3.9 8.5E-05 35.5 16.4 153 115-290 25-187 (253)
394 KOG1916 Nuclear protein, conta 93.9 0.096 2.1E-06 51.8 5.1 172 215-406 129-323 (1283)
395 PF04841 Vps16_N: Vps16, N-ter 93.8 5.9 0.00013 37.3 19.8 55 218-279 216-271 (410)
396 PF14870 PSII_BNR: Photosynthe 93.8 4.6 0.0001 36.0 24.4 116 215-352 141-257 (302)
397 TIGR02604 Piru_Ver_Nterm putat 93.6 3.4 7.3E-05 38.3 14.6 154 171-345 14-201 (367)
398 PF05694 SBP56: 56kDa selenium 93.4 3 6.5E-05 38.7 13.3 123 116-252 183-347 (461)
399 PF14655 RAB3GAP2_N: Rab3 GTPa 93.3 7.1 0.00015 36.5 25.5 82 323-404 303-396 (415)
400 TIGR02604 Piru_Ver_Nterm putat 93.2 7.1 0.00015 36.2 17.1 17 34-50 15-31 (367)
401 KOG4499 Ca2+-binding protein R 93.1 4.7 0.0001 33.9 17.6 143 169-337 107-263 (310)
402 KOG4441 Proteins containing BT 93.1 2.8 6.1E-05 41.3 13.8 151 125-301 379-549 (571)
403 PF14727 PHTB1_N: PTHB1 N-term 93.1 7.7 0.00017 36.3 25.3 52 237-298 153-204 (418)
404 KOG2280 Vacuolar assembly/sort 93.1 6.9 0.00015 38.7 15.7 49 194-247 64-112 (829)
405 KOG1916 Nuclear protein, conta 93.0 0.16 3.4E-06 50.4 5.0 95 193-298 152-265 (1283)
406 PF05096 Glu_cyclase_2: Glutam 93.0 5.5 0.00012 34.5 19.4 193 33-286 45-249 (264)
407 KOG4499 Ca2+-binding protein R 92.9 5 0.00011 33.7 13.3 48 223-278 216-264 (310)
408 KOG3630 Nuclear pore complex, 92.9 1.1 2.3E-05 46.1 10.5 151 171-344 101-260 (1405)
409 PF07995 GSDH: Glucose / Sorbo 92.9 7.3 0.00016 35.5 19.9 71 268-351 253-330 (331)
410 KOG4441 Proteins containing BT 92.8 8.8 0.00019 37.9 16.6 156 116-301 325-502 (571)
411 PF14655 RAB3GAP2_N: Rab3 GTPa 92.7 2.3 5.1E-05 39.6 11.9 80 215-302 304-402 (415)
412 PF07995 GSDH: Glucose / Sorbo 92.0 5.1 0.00011 36.5 13.2 57 220-278 3-59 (331)
413 PF10647 Gmad1: Lipoprotein Lp 91.9 7.9 0.00017 33.7 19.7 155 34-243 25-192 (253)
414 cd00216 PQQ_DH Dehydrogenases 91.8 13 0.00028 36.0 21.8 23 232-255 303-326 (488)
415 COG5167 VID27 Protein involved 91.5 7.4 0.00016 36.7 13.3 133 195-355 491-631 (776)
416 KOG2377 Uncharacterized conser 91.3 7.4 0.00016 36.1 12.9 74 267-355 66-139 (657)
417 PF00780 CNH: CNH domain; Int 91.2 9.9 0.00021 33.4 22.1 119 220-355 37-164 (275)
418 PF07569 Hira: TUP1-like enhan 91.1 1.5 3.3E-05 37.0 8.3 74 275-355 18-94 (219)
419 TIGR03606 non_repeat_PQQ dehyd 90.9 13 0.00028 35.3 14.8 62 217-279 28-90 (454)
420 KOG1897 Damage-specific DNA bi 90.8 22 0.00047 36.6 26.7 70 269-355 776-855 (1096)
421 PRK13684 Ycf48-like protein; P 90.6 13 0.00029 33.8 15.2 157 171-354 173-329 (334)
422 PHA03098 kelch-like protein; P 90.6 13 0.00029 36.4 15.6 28 126-153 342-374 (534)
423 KOG3630 Nuclear pore complex, 90.2 11 0.00024 39.3 14.2 152 115-284 102-259 (1405)
424 PF08728 CRT10: CRT10; InterP 89.8 7.6 0.00017 38.8 12.6 121 220-355 102-245 (717)
425 PF07569 Hira: TUP1-like enhan 89.5 2.8 6E-05 35.5 8.5 85 40-152 18-102 (219)
426 PF13449 Phytase-like: Esteras 89.2 17 0.00037 33.0 17.3 125 220-355 86-248 (326)
427 KOG1900 Nuclear pore complex, 89.0 4 8.7E-05 42.9 10.5 80 217-299 177-273 (1311)
428 PF14870 PSII_BNR: Photosynthe 88.9 17 0.00036 32.5 23.5 157 171-353 145-301 (302)
429 PF12657 TFIIIC_delta: Transcr 88.7 4.1 8.8E-05 33.0 8.8 31 269-299 87-122 (173)
430 KOG3616 Selective LIM binding 88.6 17 0.00037 36.1 13.6 35 31-65 13-47 (1636)
431 KOG2377 Uncharacterized conser 88.5 11 0.00023 35.1 11.7 106 215-343 63-169 (657)
432 PRK10115 protease 2; Provision 87.7 35 0.00075 34.8 27.2 197 34-298 128-344 (686)
433 KOG4460 Nuclear pore complex, 87.1 12 0.00025 35.6 11.2 83 268-355 104-197 (741)
434 PHA02790 Kelch-like protein; P 86.9 31 0.00067 33.4 15.8 30 126-155 318-349 (480)
435 PHA02713 hypothetical protein; 86.6 7.6 0.00016 38.3 10.7 94 138-247 433-533 (557)
436 PF03088 Str_synth: Strictosid 86.6 8.9 0.00019 27.0 8.1 44 286-347 33-76 (89)
437 PF14761 HPS3_N: Hermansky-Pud 86.2 19 0.0004 30.1 17.6 77 217-297 133-213 (215)
438 PRK10115 protease 2; Provision 85.5 29 0.00063 35.3 14.4 110 220-355 128-254 (686)
439 COG4590 ABC-type uncharacteriz 85.2 3.3 7.1E-05 38.3 6.7 57 281-355 329-385 (733)
440 KOG1897 Damage-specific DNA bi 85.2 50 0.0011 34.2 22.3 109 220-355 776-897 (1096)
441 KOG2247 WD40 repeat-containing 84.1 0.2 4.2E-06 46.3 -1.3 139 38-238 40-179 (615)
442 PF08728 CRT10: CRT10; InterP 83.8 51 0.0011 33.2 17.6 76 218-298 163-246 (717)
443 TIGR02276 beta_rpt_yvtn 40-res 83.0 4.9 0.00011 23.1 4.9 26 277-302 1-26 (42)
444 PRK13684 Ycf48-like protein; P 82.7 38 0.00082 30.9 23.9 112 218-351 172-283 (334)
445 COG3823 Glutamine cyclotransfe 82.5 27 0.00058 29.0 12.2 33 117-152 49-83 (262)
446 KOG2247 WD40 repeat-containing 81.9 0.27 5.8E-06 45.4 -1.3 101 219-345 75-177 (615)
447 KOG4460 Nuclear pore complex, 81.4 50 0.0011 31.6 12.7 82 220-301 105-201 (741)
448 TIGR03075 PQQ_enz_alc_DH PQQ-d 80.3 62 0.0013 31.8 23.8 28 338-365 471-502 (527)
449 TIGR03118 PEPCTERM_chp_1 conse 80.3 42 0.00091 29.8 21.5 82 237-337 220-307 (336)
450 PF11715 Nup160: Nucleoporin N 79.1 13 0.00028 36.6 9.2 74 228-302 156-252 (547)
451 PHA03098 kelch-like protein; P 78.5 60 0.0013 31.9 13.6 28 126-153 389-422 (534)
452 PF10214 Rrn6: RNA polymerase 77.9 65 0.0014 33.4 13.9 131 218-355 79-231 (765)
453 TIGR03606 non_repeat_PQQ dehyd 77.7 67 0.0015 30.7 17.1 32 33-64 30-61 (454)
454 PF07676 PD40: WD40-like Beta 77.1 11 0.00024 21.3 5.8 30 266-295 7-38 (39)
455 PF12657 TFIIIC_delta: Transcr 76.0 40 0.00087 27.2 10.2 31 114-146 86-122 (173)
456 COG4590 ABC-type uncharacteriz 75.9 14 0.00031 34.4 7.5 28 220-247 359-386 (733)
457 TIGR03075 PQQ_enz_alc_DH PQQ-d 75.6 85 0.0018 30.8 20.6 62 240-302 272-337 (527)
458 KOG2280 Vacuolar assembly/sort 75.1 97 0.0021 31.2 15.7 34 267-301 216-249 (829)
459 COG5290 IkappaB kinase complex 74.7 77 0.0017 32.2 12.3 103 172-284 248-353 (1243)
460 PF02333 Phytase: Phytase; In 74.1 75 0.0016 29.5 19.6 103 239-355 127-236 (381)
461 PF07250 Glyoxal_oxid_N: Glyox 73.3 60 0.0013 28.0 12.5 147 139-302 48-201 (243)
462 PF11635 Med16: Mediator compl 72.9 1.2E+02 0.0026 31.4 16.4 76 217-293 258-345 (753)
463 KOG1983 Tomosyn and related SN 72.8 67 0.0015 34.3 12.6 31 33-63 36-66 (993)
464 PF14781 BBS2_N: Ciliary BBSom 72.1 42 0.00091 25.7 12.5 62 229-299 63-126 (136)
465 PF07676 PD40: WD40-like Beta 72.0 16 0.00034 20.7 5.4 28 217-244 7-38 (39)
466 PF14761 HPS3_N: Hermansky-Pud 71.9 17 0.00036 30.4 6.4 47 282-344 30-76 (215)
467 PLN00033 photosystem II stabil 71.0 93 0.002 29.2 15.3 113 114-244 281-396 (398)
468 COG3823 Glutamine cyclotransfe 70.2 63 0.0014 27.0 13.6 57 229-286 185-247 (262)
469 PF01436 NHL: NHL repeat; Int 70.2 14 0.00029 19.3 3.8 25 35-59 4-28 (28)
470 PF14781 BBS2_N: Ciliary BBSom 67.5 54 0.0012 25.1 8.7 69 272-355 3-80 (136)
471 PLN00033 photosystem II stabil 67.2 1.1E+02 0.0024 28.7 24.2 114 216-353 278-396 (398)
472 KOG3616 Selective LIM binding 64.3 20 0.00044 35.7 6.2 34 267-301 14-47 (1636)
473 PF11635 Med16: Mediator compl 63.4 1.9E+02 0.0041 30.0 22.0 78 268-351 260-345 (753)
474 PF01731 Arylesterase: Arylest 61.1 39 0.00085 23.6 5.7 28 328-355 54-83 (86)
475 PF11715 Nup160: Nucleoporin N 59.7 14 0.00031 36.4 4.7 34 33-66 215-252 (547)
476 COG4257 Vgb Streptogramin lyas 59.3 1.2E+02 0.0027 26.5 19.6 240 34-355 63-304 (353)
477 PF12768 Rax2: Cortical protei 59.2 1.3E+02 0.0028 26.7 10.3 55 238-301 15-75 (281)
478 TIGR03118 PEPCTERM_chp_1 conse 56.7 1.5E+02 0.0032 26.6 18.7 215 114-355 23-278 (336)
479 smart00564 PQQ beta-propeller 53.6 25 0.00053 18.8 3.1 21 282-302 8-28 (33)
480 PF03022 MRJP: Major royal jel 52.6 1.7E+02 0.0037 26.0 15.7 109 240-355 35-158 (287)
481 TIGR02608 delta_60_rpt delta-6 51.7 58 0.0012 20.5 4.8 30 34-63 2-36 (55)
482 PF02333 Phytase: Phytase; In 49.9 2.2E+02 0.0048 26.5 19.5 103 193-299 180-291 (381)
483 PF12341 DUF3639: Protein of u 49.8 38 0.00082 17.7 3.5 25 34-60 3-27 (27)
484 COG5167 VID27 Protein involved 49.4 2.5E+02 0.0055 27.1 15.2 68 220-298 564-632 (776)
485 KOG1900 Nuclear pore complex, 49.2 2.3E+02 0.005 30.8 11.1 152 193-355 98-271 (1311)
486 PF13449 Phytase-like: Esteras 48.6 2.1E+02 0.0046 26.0 21.5 118 116-236 87-232 (326)
487 TIGR03074 PQQ_membr_DH membran 47.8 3.4E+02 0.0075 28.2 22.9 22 282-303 461-482 (764)
488 PF12768 Rax2: Cortical protei 47.5 2E+02 0.0044 25.5 9.8 39 114-154 37-81 (281)
489 PF01011 PQQ: PQQ enzyme repea 47.2 32 0.0007 19.4 3.0 21 283-303 3-23 (38)
490 KOG1983 Tomosyn and related SN 43.1 4.6E+02 0.01 28.3 13.0 32 114-147 36-67 (993)
491 PF08801 Nucleoporin_N: Nup133 41.5 3.1E+02 0.0068 25.9 15.0 31 268-299 190-220 (422)
492 KOG3522 Predicted guanine nucl 40.7 1.3E+02 0.0029 30.8 7.6 132 193-355 556-696 (925)
493 COG5290 IkappaB kinase complex 40.6 4.3E+02 0.0094 27.3 11.5 29 114-144 113-141 (1243)
494 PF13570 PQQ_3: PQQ-like domai 40.3 46 0.001 18.9 3.0 21 126-146 20-40 (40)
495 PF14269 Arylsulfotran_2: Aryl 40.1 2.8E+02 0.006 24.9 15.3 33 35-67 146-178 (299)
496 PF14269 Arylsulfotran_2: Aryl 39.9 1.8E+02 0.0039 26.1 8.0 74 219-297 144-219 (299)
497 PF14727 PHTB1_N: PTHB1 N-term 38.0 3.6E+02 0.0078 25.6 15.1 109 182-299 37-164 (418)
498 PF08954 DUF1900: Domain of un 37.0 1.2E+02 0.0026 23.4 5.5 57 267-338 10-67 (136)
499 COG5308 NUP170 Nuclear pore co 34.3 3.1E+02 0.0067 28.7 9.0 82 218-302 181-279 (1263)
500 PHA02790 Kelch-like protein; P 33.9 4.5E+02 0.0097 25.5 15.0 147 126-301 271-426 (480)
No 1
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-44 Score=300.02 Aligned_cols=338 Identities=51% Similarity=0.803 Sum_probs=286.6
Q ss_pred hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005 6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS 85 (432)
Q Consensus 6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (432)
..+...+.|+|+|.++.. ++..+.|.++.|+..|.+||||+.+|.|.++.-+.....
T Consensus 4 ~~~~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~------------------ 60 (433)
T KOG1354|consen 4 MGKNEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG------------------ 60 (433)
T ss_pred cCcchhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeeccccccc------------------
Confidence 345678899999999843 777889999999999999999999999999986654321
Q ss_pred cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccc
Q 014005 86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN 165 (432)
Q Consensus 86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 165 (432)
++.+...++.|+++|||+++++++.+|+.+.|++..+...++..+.|++|++|.+.....+. ...+....
T Consensus 61 ----ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~-~~~~~~~~----- 130 (433)
T KOG1354|consen 61 ----EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK-EGYNLPEE----- 130 (433)
T ss_pred ----ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccc-cccccccc-----
Confidence 67788999999999999999999999999999865566778889999999999997655333 11111110
Q ss_pred ccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEe
Q 014005 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWN 245 (432)
Q Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd 245 (432)
...+.+.. -....+-.........|.+.+..+|+..|+++.++.|++.+++++|=.|.+|+
T Consensus 131 --~~~~~~~~-----------------lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWn 191 (433)
T KOG1354|consen 131 --GPPGTITS-----------------LRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWN 191 (433)
T ss_pred --CCCCccce-----------------eeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeecc
Confidence 00000000 00111112222235678888888999999999999999999999999999999
Q ss_pred CCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceee
Q 014005 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (432)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 325 (432)
++..++++.+++++|..+......|++..|||..+++|+..+..|+|++.|+|...+|++..+.|+. +++|..+++|++
T Consensus 192 lei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe-pedp~~rsffse 270 (433)
T KOG1354|consen 192 LEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE-PEDPSSRSFFSE 270 (433)
T ss_pred ccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc-ccCCcchhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998899999 999999999999
Q ss_pred eecceeEEEEcCCCCEEEEeeCCeEEEEec----CcceeEeecceeeeehhhhhcccccccccceeeE------------
Q 014005 326 IIASISDIKFANDGQHLLSRDYMNLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVI------------ 389 (432)
Q Consensus 326 ~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 389 (432)
....|.++.|+++|+|+++.+.-+|++||+ +|+.++++|.. ++.++|++|+++|++
T Consensus 271 iIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~--------lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 271 IISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEY--------LRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred HhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHh--------HHHHHHHHhhccchhheeEEEEcCCcc
Confidence 999999999999999999999999999999 89999999986 699999999999987
Q ss_pred EEEeecccceeeeec
Q 014005 390 YIITTLYLINLSALS 404 (432)
Q Consensus 390 ~~~~g~~~~~i~~~~ 404 (432)
++.||+|.+.+++|+
T Consensus 343 ~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFN 357 (433)
T ss_pred eEecccccceEEEec
Confidence 699999999999999
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-42 Score=290.83 Aligned_cols=291 Identities=16% Similarity=0.200 Sum_probs=237.0
Q ss_pred CCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005 24 NPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (432)
Q Consensus 24 ~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~ 103 (432)
.....-+|.++|.|++|+|+|..||+|+.|.++|+||+.+.... .+.++|.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~---------------------------~t~KgH~-- 157 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL---------------------------FTCKGHK-- 157 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc---------------------------eeecCCc--
Confidence 34445689999999999999999999999999999999987643 7899999
Q ss_pred ccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC---
Q 014005 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP--- 180 (432)
Q Consensus 104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--- 180 (432)
..|.+++| +|||+.|++|+.||+|++||.++++.. -..+..|. ..|.+++|.|
T Consensus 158 ----------~WVlcvaw--sPDgk~iASG~~dg~I~lwdpktg~~~-g~~l~gH~-----------K~It~Lawep~hl 213 (480)
T KOG0271|consen 158 ----------NWVLCVAW--SPDGKKIASGSKDGSIRLWDPKTGQQI-GRALRGHK-----------KWITALAWEPLHL 213 (480)
T ss_pred ----------cEEEEEEE--CCCcchhhccccCCeEEEecCCCCCcc-cccccCcc-----------cceeEEeeccccc
Confidence 99999999 999999999999999999999888732 22344555 7888888854
Q ss_pred --CCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeE--
Q 014005 181 --SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI-- 255 (432)
Q Consensus 181 --~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~-- 255 (432)
....+++++. ||.++|||+. .++|+..+ .+|+..|+|+.|--+| ++++| .|++|++|+.. .+.+.++
T Consensus 214 ~p~~r~las~sk--Dg~vrIWd~~---~~~~~~~l-sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~-dG~~~r~lk 285 (480)
T KOG0271|consen 214 VPPCRRLASSSK--DGSVRIWDTK---LGTCVRTL-SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRAL-DGKLCRELK 285 (480)
T ss_pred CCCccceecccC--CCCEEEEEcc---CceEEEEe-ccCccceEEEEEcCCc-eEEecCCCceEEEEEcc-chhHHHhhc
Confidence 5667788777 9999999999 78899999 8999999999998766 78888 99999999873 1111100
Q ss_pred -----------------------------------------------------------------eec----CC-CCcCC
Q 014005 256 -----------------------------------------------------------------VDM----KP-SNMDD 265 (432)
Q Consensus 256 -----------------------------------------------------------------~~~----~~-~~~~~ 265 (432)
++. +| ..+.+
T Consensus 286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg 365 (480)
T KOG0271|consen 286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG 365 (480)
T ss_pred ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc
Confidence 000 01 14578
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~ 345 (432)
|..-|+.+.|+||+ +++|+++.|+.|++||.++|+. +..|++| -+.|..++|+.|.++|++|
T Consensus 366 Hq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk~----lasfRGH-------------v~~VYqvawsaDsRLlVS~ 427 (480)
T KOG0271|consen 366 HQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGKF----LASFRGH-------------VAAVYQVAWSADSRLLVSG 427 (480)
T ss_pred hhhheeeEEECCCc-cEEEEeecccceeeeeCCCcch----hhhhhhc-------------cceeEEEEeccCccEEEEc
Confidence 99999999999999 9999999999999999999997 7999998 8999999999999999998
Q ss_pred eC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 346 DY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 346 ~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
+. .++++||+ +....+..|... .++..+. .....+++|..|..+++|.
T Consensus 428 SkDsTLKvw~V~tkKl~~DLpGh~DE----------Vf~vDws-pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 428 SKDSTLKVWDVRTKKLKQDLPGHADE----------VFAVDWS-PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCCceEEEEEeeeeeecccCCCCCce----------EEEEEec-CCCceeecCCCceEEEeec
Confidence 55 99999999 555666666542 2222222 2334588999999999985
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.6e-43 Score=298.74 Aligned_cols=283 Identities=16% Similarity=0.231 Sum_probs=244.1
Q ss_pred ccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
..+..+.+|..+.|+++++.||||+.+|.+++|+..+.. .+.+|.||.
T Consensus 170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~---------------------------~~~~l~gH~----- 217 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN---------------------------LLQTLRGHT----- 217 (459)
T ss_pred hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc---------------------------eeEEEeccc-----
Confidence 345567799999999999999999999999999998865 347999999
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
..|.++.|+|-.++..++||+.||++++|++.+.. .+..+.+|. ..|..++|+|+|+++.
T Consensus 218 -------~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~--~l~~l~gH~-----------~RVs~VafHPsG~~L~ 277 (459)
T KOG0272|consen 218 -------SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET--PLQDLEGHL-----------ARVSRVAFHPSGKFLG 277 (459)
T ss_pred -------cceeeEEEccCCCccceeeeccCCceeeeccCCCc--chhhhhcch-----------hhheeeeecCCCceee
Confidence 99999999542236689999999999999998764 555566666 7899999999999999
Q ss_pred cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
++++ |.+-++||++ +...+... .+|...|.+++|+|||..+++| -|..-++||++ ++.++..+ .+
T Consensus 278 Tasf--D~tWRlWD~~---tk~ElL~Q-EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR-tgr~im~L-------~g 343 (459)
T KOG0272|consen 278 TASF--DSTWRLWDLE---TKSELLLQ-EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR-TGRCIMFL-------AG 343 (459)
T ss_pred eccc--ccchhhcccc---cchhhHhh-cccccccceeEecCCCceeeccCccchhheeecc-cCcEEEEe-------cc
Confidence 9999 9999999998 44444444 7999999999999999999999 99999999999 78888877 89
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC-CCCEEEE
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLS 344 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~s 344 (432)
|...|.++.|+|+| ..||+|+.|++++|||++..+. +.++.+| .+-|+.++|+| .|.+|+|
T Consensus 344 H~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~----ly~ipAH-------------~nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 344 HIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSE----LYTIPAH-------------SNLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred cccceeeEeECCCc-eEEeecCCCCcEEEeeeccccc----ceecccc-------------cchhhheEecccCCeEEEE
Confidence 99999999999999 9999999999999999998776 6888887 88999999999 6899999
Q ss_pred eeC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 345 RDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 345 ~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
+++ ++++||.. .+++++..|+. ++..+-......+++|+++|.+|++|.
T Consensus 406 asyD~t~kiWs~~~~~~~ksLaGHe~-----------kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 406 ASYDNTVKIWSTRTWSPLKSLAGHEG-----------KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccCcceeeecCCCcccchhhcCCcc-----------ceEEEEeccCCceEEEeccCceeeecc
Confidence 866 99999999 89999999986 222222222334689999999999996
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.5e-41 Score=284.62 Aligned_cols=258 Identities=15% Similarity=0.237 Sum_probs=227.3
Q ss_pred cccchhhhhhhhcCCCCCccccCCCcEEEEEEcCC--CCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccc
Q 014005 9 SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKT--GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST 86 (432)
Q Consensus 9 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~--g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (432)
.....|.-.++ ....+...|++.|.++.|+|. +..||||+.||++++|++++...
T Consensus 197 G~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~-------------------- 253 (459)
T KOG0272|consen 197 GLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP-------------------- 253 (459)
T ss_pred CceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc--------------------
Confidence 34456666665 224455689999999999997 56899999999999999988654
Q ss_pred ccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccc
Q 014005 87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 166 (432)
Q Consensus 87 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 166 (432)
+..+.+|. ..|..++| +|+|++|+|++.|.+-++||+.++... .-..+|.
T Consensus 254 -------l~~l~gH~------------~RVs~Vaf--HPsG~~L~TasfD~tWRlWD~~tk~El--L~QEGHs------- 303 (459)
T KOG0272|consen 254 -------LQDLEGHL------------ARVSRVAF--HPSGKFLGTASFDSTWRLWDLETKSEL--LLQEGHS------- 303 (459)
T ss_pred -------hhhhhcch------------hhheeeee--cCCCceeeecccccchhhcccccchhh--Hhhcccc-------
Confidence 37899999 99999999 899999999999999999999988722 2233444
Q ss_pred cccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEe
Q 014005 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN 245 (432)
Q Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd 245 (432)
..|.+++|.++|..+.+|+. |..-+|||++ +++|+..+ .+|...|.+++|+|+|..+|+| .|++++|||
T Consensus 304 ----~~v~~iaf~~DGSL~~tGGl--D~~~RvWDlR---tgr~im~L-~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWD 373 (459)
T KOG0272|consen 304 ----KGVFSIAFQPDGSLAATGGL--DSLGRVWDLR---TGRCIMFL-AGHIKEILSVAFSPNGYHLATGSSDNTCKVWD 373 (459)
T ss_pred ----cccceeEecCCCceeeccCc--cchhheeecc---cCcEEEEe-cccccceeeEeECCCceEEeecCCCCcEEEee
Confidence 78999999999999999999 9999999999 99999999 8999999999999999999999 999999999
Q ss_pred CCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceee
Q 014005 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (432)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 325 (432)
++ ....+.++ .+|.+-|+.++|+|...++|++++.|++++||..++... ++.+.+|
T Consensus 374 LR-~r~~ly~i-------pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~----~ksLaGH------------ 429 (459)
T KOG0272|consen 374 LR-MRSELYTI-------PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP----LKSLAGH------------ 429 (459)
T ss_pred ec-ccccceec-------ccccchhhheEecccCCeEEEEcccCcceeeecCCCccc----chhhcCC------------
Confidence 99 56666655 999999999999995559999999999999999999887 7999998
Q ss_pred eecceeEEEEcCCCCEEEEeeC-CeEEEEe
Q 014005 326 IIASISDIKFANDGQHLLSRDY-MNLKVFR 354 (432)
Q Consensus 326 ~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd 354 (432)
.+.|.++..++||.++++++. +++++|.
T Consensus 430 -e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 430 -EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred -ccceEEEEeccCCceEEEeccCceeeecc
Confidence 899999999999999999754 9999995
No 5
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-40 Score=271.07 Aligned_cols=357 Identities=44% Similarity=0.660 Sum_probs=288.1
Q ss_pred chhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCc
Q 014005 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY 91 (432)
Q Consensus 12 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 91 (432)
-.|+|+||||++.+.......+.|+++.|...|.||++|...|.|.+|.-+... +-++
T Consensus 6 ~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~----------------------~cey 63 (460)
T COG5170 6 EILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSY----------------------GCEY 63 (460)
T ss_pred hhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeeccccc----------------------ccch
Confidence 479999999999999999999999999999999999999999999999876643 2268
Q ss_pred ceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccc
Q 014005 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (432)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (432)
++.+.|++|+++|||+++++++..|..|.|+-...-..++..+.|++|++|.+....++.+...+....+ ..+..+
T Consensus 64 kf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~----~~~~~g 139 (460)
T COG5170 64 KFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSF----HSPMGG 139 (460)
T ss_pred hhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccccc----ccccCC
Confidence 8889999999999999999999999999997433334678888999999999987765554443322100 000111
Q ss_pred ccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCc
Q 014005 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ 251 (432)
Q Consensus 172 ~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~ 251 (432)
++.. +..-.++-.+. -+..| ...+.+.+...|...|+++.++.|.+.+++++|=.|.+|+++....
T Consensus 140 ~~~s----~~~l~lprls~-hd~ii---------aa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~ 205 (460)
T COG5170 140 PLTS----TKELLLPRLSE-HDEII---------AAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDG 205 (460)
T ss_pred CcCC----HHHhhcccccc-cceEE---------EeccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCC
Confidence 1111 11101111000 01111 2334445547899999999999999999999999999999999999
Q ss_pred eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeeccee
Q 014005 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (432)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~ 331 (432)
++.+++++|..+......|++..|+|..++++...+..|.|++-|+|+..+|....+.++. ..++....+|.+....|.
T Consensus 206 sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~-~~D~v~~~ff~eivsSIS 284 (460)
T COG5170 206 SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-TIDGVDVDFFEEIVSSIS 284 (460)
T ss_pred ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh-ccCcccchhHHHHhhhhc
Confidence 9999999999999999999999999998899999999999999999998888877777777 777888889999999999
Q ss_pred EEEEcCCCCEEEEeeCCeEEEEec----CcceeEeecceeeeehhhhhcccccccccceeeE------------EEEeec
Q 014005 332 DIKFANDGQHLLSRDYMNLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVI------------YIITTL 395 (432)
Q Consensus 332 ~~~~s~dg~~l~s~~~~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~g~ 395 (432)
++.|+++|+|+++.+.-+++|||+ .|++++..|.. ....+++.|++++++ .+.+|+
T Consensus 285 D~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~--------l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgs 356 (460)
T COG5170 285 DFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCD--------LMDELNDVYENDAIFDKFEISFSGDDKHVLSGS 356 (460)
T ss_pred ceEEcCCCcEEEEeccceEEEEecccccCCceeechHHH--------HHHHHHhhhhccceeeeEEEEecCCcccccccc
Confidence 999999999999999999999999 89999999975 578899999999887 489999
Q ss_pred ccceeeeecc-------CCeeeecCCCce
Q 014005 396 YLINLSALSA-------GMDSILQPDPIA 417 (432)
Q Consensus 396 ~~~~i~~~~~-------~~~~~~~~~~~~ 417 (432)
|.+++.+|+. ..+++.++|+.+
T Consensus 357 y~NNfgiyp~~ssg~~D~g~vv~~ad~~a 385 (460)
T COG5170 357 YSNNFGIYPTDSSGFKDVGHVVNLADGSA 385 (460)
T ss_pred cccceeeeccccCCCCcceEEEecccCCc
Confidence 9999999991 156666666544
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-39 Score=271.79 Aligned_cols=295 Identities=16% Similarity=0.225 Sum_probs=230.1
Q ss_pred cchhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccc
Q 014005 3 LNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMD 82 (432)
Q Consensus 3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 82 (432)
+.+..+...+.|++.. +.+....-.|...|.|++|+|||+.||+|+.||+|++||..+++.. .+.+.+|..
T Consensus 131 ~tGsGD~TvR~WD~~T---eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~------g~~l~gH~K 201 (480)
T KOG0271|consen 131 VTGSGDTTVRLWDLDT---ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI------GRALRGHKK 201 (480)
T ss_pred EecCCCceEEeeccCC---CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc------cccccCccc
Confidence 3445667778888773 2334455689999999999999999999999999999999988754 566777777
Q ss_pred cc--ccccC-------------------------CcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeC
Q 014005 83 FT--STSHP-------------------------EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN 135 (432)
Q Consensus 83 ~~--~~~~p-------------------------~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~ 135 (432)
++ +++.| ...++..+.||+ .+|+|+.| --+| ++++|+.
T Consensus 202 ~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT------------~~VTCvrw--GG~g-liySgS~ 266 (480)
T KOG0271|consen 202 WITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT------------ASVTCVRW--GGEG-LIYSGSQ 266 (480)
T ss_pred ceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc------------cceEEEEE--cCCc-eEEecCC
Confidence 77 55555 234667788999 99999999 4444 9999999
Q ss_pred CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc-------------------------ceeccee
Q 014005 136 DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-------------------------HGYHLEW 190 (432)
Q Consensus 136 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------------------~~~~~~~ 190 (432)
|++|++|+...|.+. ..+.+|..-........+...+.-+|.+.+. .+++|+.
T Consensus 267 DrtIkvw~a~dG~~~--r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 267 DRTIKVWRALDGKLC--RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CceEEEEEccchhHH--HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999887632 2233333100000000001111222333333 3777777
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
|.++.+|+... ..+++..+ .+|..-|+.+.|+||++++|++ -|..|++||.+ +++.+..+ .+|-+.
T Consensus 345 --d~tlflW~p~~--~kkpi~rm-tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~-tGk~lasf-------RGHv~~ 411 (480)
T KOG0271|consen 345 --DFTLFLWNPFK--SKKPITRM-TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGR-TGKFLASF-------RGHVAA 411 (480)
T ss_pred --CceEEEecccc--cccchhhh-hchhhheeeEEECCCccEEEEeecccceeeeeCC-Ccchhhhh-------hhccce
Confidence 89999999764 44566666 7999999999999999999999 99999999999 78877765 999999
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCC
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYM 348 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~ 348 (432)
|..++|+.|. ++|++|+.|.++++||+++.++ ...+.+| ...|.++.|+|||..+++| .|.
T Consensus 412 VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkKl----~~DLpGh-------------~DEVf~vDwspDG~rV~sggkdk 473 (480)
T KOG0271|consen 412 VYQVAWSADS-RLLVSGSKDSTLKVWDVRTKKL----KQDLPGH-------------ADEVFAVDWSPDGQRVASGGKDK 473 (480)
T ss_pred eEEEEeccCc-cEEEEcCCCceEEEEEeeeeee----cccCCCC-------------CceEEEEEecCCCceeecCCCce
Confidence 9999999998 9999999999999999999877 5778887 8999999999999999997 559
Q ss_pred eEEEEe
Q 014005 349 NLKVFR 354 (432)
Q Consensus 349 ~i~iwd 354 (432)
.+++|.
T Consensus 474 v~~lw~ 479 (480)
T KOG0271|consen 474 VLRLWR 479 (480)
T ss_pred EEEeec
Confidence 999995
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.4e-37 Score=251.53 Aligned_cols=283 Identities=18% Similarity=0.263 Sum_probs=236.8
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
+-.|.+.|.++.|++|.++|++++.||.+.|||.-+.... .-+.-..
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~---------------------------haipl~s------ 97 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV---------------------------HAIPLPS------ 97 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce---------------------------eEEecCc------
Confidence 3478999999999999999999999999999997665432 2233333
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc----ceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ----KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 183 (432)
..|...+| +|.|+++|.|+.|+...||++.+. .......+..|. +.+.++.|-+ ..
T Consensus 98 ------~WVMtCA~--sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt-----------gylScC~f~d-D~ 157 (343)
T KOG0286|consen 98 ------SWVMTCAY--SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT-----------GYLSCCRFLD-DN 157 (343)
T ss_pred ------eeEEEEEE--CCCCCeEEecCcCceeEEEecccccccccceeeeeecCcc-----------ceeEEEEEcC-CC
Confidence 78999999 899999999999999999999854 234444566666 7888888877 56
Q ss_pred ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC
Q 014005 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (432)
Q Consensus 184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~ 261 (432)
.+++++. |.+..+||++ +++..+.| .+|.+.|.+++++| +++.+++| -|+..++||++ .+.+.+.|
T Consensus 158 ~ilT~SG--D~TCalWDie---~g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R-~~~c~qtF----- 225 (343)
T KOG0286|consen 158 HILTGSG--DMTCALWDIE---TGQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR-SGQCVQTF----- 225 (343)
T ss_pred ceEecCC--CceEEEEEcc---cceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeecc-CcceeEee-----
Confidence 6777776 9999999999 88999999 89999999999999 99999999 99999999999 77888877
Q ss_pred CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (432)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 341 (432)
.+|.+.|++++|.|+| .-|++|+.|++.++||+|..+. +..++. .. ...+|++++||-.|++
T Consensus 226 --~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~----~a~ys~-~~----------~~~gitSv~FS~SGRl 287 (343)
T KOG0286|consen 226 --EGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQE----LAVYSH-DS----------IICGITSVAFSKSGRL 287 (343)
T ss_pred --cccccccceEEEccCC-CeeeecCCCceeEEEeecCCcE----Eeeecc-Cc----------ccCCceeEEEcccccE
Confidence 9999999999999999 9999999999999999998765 455553 11 2568999999999999
Q ss_pred EEEe-eCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 342 LLSR-DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 342 l~s~-~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
|.+| +|.++.+||. +.+..+..|+. ++..+.......-+.|||+|..++||.
T Consensus 288 Lfagy~d~~c~vWDtlk~e~vg~L~GHeN-----------RvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 288 LFAGYDDFTCNVWDTLKGERVGVLAGHEN-----------RVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEeeecCCceeEeeccccceEEEeeccCC-----------eeEEEEECCCCcEEEecchhHheeecC
Confidence 9997 6699999999 66677777765 444433444455699999999999994
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-36 Score=244.19 Aligned_cols=292 Identities=15% Similarity=0.144 Sum_probs=232.5
Q ss_pred cccCCCcEEEEEEcCC-CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~-g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
...|++.|+.++..+. -+.|.+++.|.++.+|++...... .....+.+.||+
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~----------------------~G~~~r~~~GHs----- 63 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK----------------------YGVPVRRLTGHS----- 63 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----------------------cCceeeeeeccc-----
Confidence 4579999999999987 467899999999999999875322 234567899999
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
..|..+.. ++||+++++++.|+++++||+.+++ ....+.+|. ..|.+++++++...++
T Consensus 64 -------H~v~dv~~--s~dg~~alS~swD~~lrlWDl~~g~--~t~~f~GH~-----------~dVlsva~s~dn~qiv 121 (315)
T KOG0279|consen 64 -------HFVSDVVL--SSDGNFALSASWDGTLRLWDLATGE--STRRFVGHT-----------KDVLSVAFSTDNRQIV 121 (315)
T ss_pred -------eEecceEE--ccCCceEEeccccceEEEEEecCCc--EEEEEEecC-----------CceEEEEecCCCceee
Confidence 99999999 8999999999999999999999986 344455555 7899999999999999
Q ss_pred cceeeccceEEEEeecccccceeeEEeecC-CCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~--~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~ 262 (432)
+|+. |.++++|+.. +.|..+.... +.+.|+|++|+|+ ..+++++ .|+++++||++ +-+....
T Consensus 122 SGSr--DkTiklwnt~----g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~-~~~l~~~------- 187 (315)
T KOG0279|consen 122 SGSR--DKTIKLWNTL----GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR-NCQLRTT------- 187 (315)
T ss_pred cCCC--cceeeeeeec----ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC-Ccchhhc-------
Confidence 9999 9999999985 4565555222 3789999999998 6788888 99999999999 4444443
Q ss_pred cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (432)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 342 (432)
+.+|+..++.+++|||| .++++|+.||.+.+||++.++. +..+.. ...|.+++|+|+..+|
T Consensus 188 ~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~----lysl~a--------------~~~v~sl~fspnrywL 248 (315)
T KOG0279|consen 188 FIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKN----LYSLEA--------------FDIVNSLCFSPNRYWL 248 (315)
T ss_pred cccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCce----eEeccC--------------CCeEeeEEecCCceeE
Confidence 48999999999999999 9999999999999999998876 466665 6899999999999888
Q ss_pred EEeeCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccce-eeEEEEeecccceeeeec
Q 014005 343 LSRDYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALS-CVIYIITTLYLINLSALS 404 (432)
Q Consensus 343 ~s~~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~i~~~~ 404 (432)
+.+.+..|+|||+ ..+.+++...... ..-...+.|.....+ ....+..|-.|+.|.+|.
T Consensus 249 ~~at~~sIkIwdl~~~~~v~~l~~d~~g~---s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 249 CAATATSIKIWDLESKAVVEELKLDGIGP---SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred eeccCCceEEEeccchhhhhhcccccccc---ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 8887778999999 5666665543211 000112333322221 234577788888888886
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.5e-37 Score=243.16 Aligned_cols=281 Identities=16% Similarity=0.206 Sum_probs=226.6
Q ss_pred cchhhccccchhhhhhhhcCCCCCccccCCC-cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccc
Q 014005 3 LNREEASASLEWKCSQAFGERNPDEELQDVD-IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQM 81 (432)
Q Consensus 3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~-~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 81 (432)
++++++-..+.|.... | .-...++|.+ .|+.+...|++++||+|+. ..||+||+++.+..
T Consensus 14 vsA~YDhTIRfWqa~t--G--~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-------------- 74 (311)
T KOG0315|consen 14 VSAGYDHTIRFWQALT--G--ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-------------- 74 (311)
T ss_pred EeccCcceeeeeehhc--C--eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC--------------
Confidence 3445555666665442 1 1123567754 7999999999999999887 48999999987632
Q ss_pred cccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcc
Q 014005 82 DFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFV 161 (432)
Q Consensus 82 ~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 161 (432)
++.+|.+|+ +.|..+.| ..+|+++++|+.||+++|||++...+.+...+.
T Consensus 75 -----------Pv~t~e~h~------------kNVtaVgF--~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~----- 124 (311)
T KOG0315|consen 75 -----------PVATFEGHT------------KNVTAVGF--QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN----- 124 (311)
T ss_pred -----------ceeEEeccC------------CceEEEEE--eecCeEEEecCCCceEEEEeccCcccchhccCC-----
Confidence 668999999 99999999 889999999999999999999986655554443
Q ss_pred ccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe
Q 014005 162 SSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR 240 (432)
Q Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~ 240 (432)
.+|.++..+|+...++++.. +|.|++||+. ...|...+.......|.++.+.|+|.+++.+ ..|+
T Consensus 125 ---------spVn~vvlhpnQteLis~dq--sg~irvWDl~---~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 125 ---------SPVNTVVLHPNQTELISGDQ--SGNIRVWDLG---ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred ---------CCcceEEecCCcceEEeecC--CCcEEEEEcc---CCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc
Confidence 68999999999999999999 9999999998 5556555545666789999999999999999 9999
Q ss_pred EEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCc
Q 014005 241 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK 320 (432)
Q Consensus 241 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~ 320 (432)
+++|++-. .+....+ .....++.|...+..+.+||++ ++||+++.|.+++||+..+. . +....+++|
T Consensus 191 cyvW~l~~-~~~~s~l-~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~-~--kle~~l~gh------- 257 (311)
T KOG0315|consen 191 CYVWRLLN-HQTASEL-EPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDF-F--KLELVLTGH------- 257 (311)
T ss_pred EEEEEccC-CCccccc-eEhhheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCc-e--eeEEEeecC-------
Confidence 99999973 3322222 1123468999999999999999 99999999999999999875 1 125777886
Q ss_pred cceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec---CcceeEeecc
Q 014005 321 SFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY---EPVMTLSFCG 365 (432)
Q Consensus 321 ~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~---~~~~~~~~~~ 365 (432)
..++++.+||.||+||++| +|+.+++||+ +.++.+..|.
T Consensus 258 ------~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 258 ------QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH 300 (311)
T ss_pred ------CceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence 8899999999999999997 5699999999 5556665553
No 10
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.2e-37 Score=254.87 Aligned_cols=303 Identities=14% Similarity=0.204 Sum_probs=249.4
Q ss_pred cchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCC
Q 014005 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE 90 (432)
Q Consensus 11 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 90 (432)
...||+.++.. .|.+.|.|+++.|.++++++|+.|++|+|||+.++++.
T Consensus 138 HapwKl~rVi~--------gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk----------------------- 186 (460)
T KOG0285|consen 138 HAPWKLYRVIS--------GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK----------------------- 186 (460)
T ss_pred cCcceehhhhh--------hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE-----------------------
Confidence 34678887766 78999999999999999999999999999999998754
Q ss_pred cceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccc
Q 014005 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (432)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (432)
.++.||. ..|..+++ ++-..|+++++.|+.|+.||++..+ .+..+.+|-
T Consensus 187 ----ltltGhi------------~~vr~vav--S~rHpYlFs~gedk~VKCwDLe~nk--vIR~YhGHl----------- 235 (460)
T KOG0285|consen 187 ----LTLTGHI------------ETVRGVAV--SKRHPYLFSAGEDKQVKCWDLEYNK--VIRHYHGHL----------- 235 (460)
T ss_pred ----Eeecchh------------heeeeeee--cccCceEEEecCCCeeEEEechhhh--hHHHhcccc-----------
Confidence 7889999 99999999 8888999999999999999999877 444455555
Q ss_pred cccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCC
Q 014005 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 249 (432)
Q Consensus 171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~ 249 (432)
+.|.+++.+|....+++++. |..+++||++ +...+..+ .+|...|.++.+.|....+++| .|++|++||++ .
T Consensus 236 S~V~~L~lhPTldvl~t~gr--Dst~RvWDiR---tr~~V~~l-~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~-a 308 (460)
T KOG0285|consen 236 SGVYCLDLHPTLDVLVTGGR--DSTIRVWDIR---TRASVHVL-SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLR-A 308 (460)
T ss_pred ceeEEEeccccceeEEecCC--cceEEEeeec---ccceEEEe-cCCCCcceeEEeecCCCceEEecCCceEEEeeec-c
Confidence 88999999999999999999 9999999999 77888888 8999999999999988899999 99999999999 6
Q ss_pred CceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecc
Q 014005 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (432)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~ 329 (432)
++...++ ..|...+++++.+|.. ..||+++.| .|+-|++..|.. +..+.+| ..-
T Consensus 309 gkt~~tl-------t~hkksvral~lhP~e-~~fASas~d-nik~w~~p~g~f----~~nlsgh-------------~~i 362 (460)
T KOG0285|consen 309 GKTMITL-------THHKKSVRALCLHPKE-NLFASASPD-NIKQWKLPEGEF----LQNLSGH-------------NAI 362 (460)
T ss_pred CceeEee-------ecccceeeEEecCCch-hhhhccCCc-cceeccCCccch----hhccccc-------------cce
Confidence 6666655 7889999999999998 999999888 699999998887 4678887 788
Q ss_pred eeEEEEcCCCCEEEEeeC-CeEEEEecC------cceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeee
Q 014005 330 ISDIKFANDGQHLLSRDY-MNLKVFRYE------PVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSA 402 (432)
Q Consensus 330 v~~~~~s~dg~~l~s~~~-~~i~iwd~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 402 (432)
|+.++...|| ++++|+| |.+.+||.+ ..+++..++. ......+...++.....-++||..|.+|++
T Consensus 363 intl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGS------l~sEagI~as~fDktg~rlit~eadKtIk~ 435 (460)
T KOG0285|consen 363 INTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGS------LESEAGIFASCFDKTGSRLITGEADKTIKM 435 (460)
T ss_pred eeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCc------cccccceeEEeecccCceEEeccCCcceEE
Confidence 9999999888 5556655 999999992 2222222221 111112223333334456999999999999
Q ss_pred eccCCeeeecCCC
Q 014005 403 LSAGMDSILQPDP 415 (432)
Q Consensus 403 ~~~~~~~~~~~~~ 415 (432)
|....+...+.+|
T Consensus 436 ~keDe~aT~EthP 448 (460)
T KOG0285|consen 436 YKEDEHATEETHP 448 (460)
T ss_pred EecccccCcccCC
Confidence 9977666666655
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-36 Score=241.83 Aligned_cols=274 Identities=16% Similarity=0.266 Sum_probs=212.5
Q ss_pred cchhhccccchhhhhhh---hcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhc
Q 014005 3 LNREEASASLEWKCSQA---FGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEK 79 (432)
Q Consensus 3 ~~~~~~~~~~~w~~~~~---~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 79 (432)
+++.-+-....|++... +| ......-+|+..|..+..+++|++.++++.|+++|+||+.+++
T Consensus 32 ~sasrDk~ii~W~L~~dd~~~G-~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~-------------- 96 (315)
T KOG0279|consen 32 VSASRDKTIIVWKLTSDDIKYG-VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE-------------- 96 (315)
T ss_pred EEcccceEEEEEEeccCccccC-ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCc--------------
Confidence 34444455566777643 22 1111223689999999999999999999999999999999975
Q ss_pred cccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCC
Q 014005 80 QMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP 159 (432)
Q Consensus 80 ~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 159 (432)
..+.|.||. ..|.+++| ++|.+++++|+.|++|++|+..+.....+.... +.
T Consensus 97 -------------~t~~f~GH~------------~dVlsva~--s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~-~~ 148 (315)
T KOG0279|consen 97 -------------STRRFVGHT------------KDVLSVAF--STDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDS-HR 148 (315)
T ss_pred -------------EEEEEEecC------------CceEEEEe--cCCCceeecCCCcceeeeeeecccEEEEEecCC-Cc
Confidence 337899999 99999999 899999999999999999999876533332221 13
Q ss_pred ccccccccccccccccccCCCC--CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-
Q 014005 160 FVSSENTLLAEKNFMNEHNPPS--FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA- 236 (432)
Q Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~- 236 (432)
+.|.++.|+|. ...++.++. |++|++||++ ..+....+ .+|.+.++.++++|||..+++|
T Consensus 149 -----------~WVscvrfsP~~~~p~Ivs~s~--DktvKvWnl~---~~~l~~~~-~gh~~~v~t~~vSpDGslcasGg 211 (315)
T KOG0279|consen 149 -----------EWVSCVRFSPNESNPIIVSASW--DKTVKVWNLR---NCQLRTTF-IGHSGYVNTVTVSPDGSLCASGG 211 (315)
T ss_pred -----------CcEEEEEEcCCCCCcEEEEccC--CceEEEEccC---Ccchhhcc-ccccccEEEEEECCCCCEEecCC
Confidence 78999999999 677777777 9999999999 66777777 8999999999999999999999
Q ss_pred cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccc
Q 014005 237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 316 (432)
Q Consensus 237 ~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~ 316 (432)
.||.+.+||++ .++.+.. .+|...|++++|+|+. ..|+ +..+..|+|||+.++.........+.+ +
T Consensus 212 kdg~~~LwdL~-~~k~lys--------l~a~~~v~sl~fspnr-ywL~-~at~~sIkIwdl~~~~~v~~l~~d~~g-~-- 277 (315)
T KOG0279|consen 212 KDGEAMLWDLN-EGKNLYS--------LEAFDIVNSLCFSPNR-YWLC-AATATSIKIWDLESKAVVEELKLDGIG-P-- 277 (315)
T ss_pred CCceEEEEEcc-CCceeEe--------ccCCCeEeeEEecCCc-eeEe-eccCCceEEEeccchhhhhhccccccc-c--
Confidence 99999999999 6666665 4778889999999986 5554 445667999999987753322111222 1
Q ss_pred cCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005 317 HGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
.. ........+++|++||..|.+| .++.|++|.+
T Consensus 278 -s~----~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 278 -SS----KAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred -cc----ccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 00 0012356789999999999999 6699999986
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-36 Score=251.91 Aligned_cols=281 Identities=16% Similarity=0.228 Sum_probs=239.2
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
.+|..+|+.+-|+|+-...++++.|++|++||..+++. ...++||+
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---------------------------e~~LrGHt------- 150 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---------------------------ERSLRGHT------- 150 (406)
T ss_pred hccccceeeeeeccCceEEEEecCCceEEEEEccchhh---------------------------hhhhhccc-------
Confidence 46788999999999999999999999999999999874 37899999
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
+.|.+|+| +..|+++++++.|=.+++||..+. ...+..+..|. ..|.++.|-|.+.++.++
T Consensus 151 -----~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~ks~~gh~-----------h~vS~V~f~P~gd~ilS~ 211 (406)
T KOG0295|consen 151 -----DSVFDISF--DASGKYLATCSSDLSAKLWDFDTF-FRCIKSLIGHE-----------HGVSSVFFLPLGDHILSC 211 (406)
T ss_pred -----cceeEEEE--ecCccEEEecCCccchhheeHHHH-HHHHHHhcCcc-----------cceeeEEEEecCCeeeec
Confidence 88999999 889999999999999999999764 22333334444 678889999999999999
Q ss_pred eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
+. |.+++.|++. ++-|+.+| .+|...+..++.+.||.+++++ .|.++++|-+. ++++...+ ..|.
T Consensus 212 sr--D~tik~We~~---tg~cv~t~-~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~-t~~~k~~l-------R~hE 277 (406)
T KOG0295|consen 212 SR--DNTIKAWECD---TGYCVKTF-PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVA-TKQCKAEL-------REHE 277 (406)
T ss_pred cc--ccceeEEecc---cceeEEec-cCchHhEEEEEecCCeeEEEecCCCceEEEEEec-cchhhhhh-------hccc
Confidence 99 9999999999 88999999 8999999999999999999999 99999999999 67666655 7888
Q ss_pred cceEEEEEcCC--------------CCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEE
Q 014005 268 EVITSAEFHPI--------------YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (432)
Q Consensus 268 ~~v~~~~~~p~--------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~ 333 (432)
-+|-+++|-|. +.+++++++.|++|++||+.++.. +.++.+| .++|.++
T Consensus 278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c----L~tL~gh-------------dnwVr~~ 340 (406)
T KOG0295|consen 278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC----LFTLVGH-------------DNWVRGV 340 (406)
T ss_pred cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE----EEEEecc-------------cceeeee
Confidence 89999998763 126999999999999999999975 7899998 8999999
Q ss_pred EEcCCCCEEEEe-eCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 334 KFANDGQHLLSR-DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 334 ~~s~dg~~l~s~-~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
+|+|.|+||+++ +|+++++||+ .+.+++..|+..+-..++ ....-+++||+-|-.+++|.
T Consensus 341 af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf-----------h~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 341 AFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF-----------HKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEec-----------CCCCceEEeccccceeeeee
Confidence 999999999997 5599999999 677777777642211111 12223799999999999996
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.2e-36 Score=273.38 Aligned_cols=265 Identities=14% Similarity=0.247 Sum_probs=222.8
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCcccc-chhhhc--cccccccccC-CcceeeeeecCCcccccc
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHIS-RSELEK--QMDFTSTSHP-EYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~p-~~~~~~~~~~h~~~~~~~ 107 (432)
...++|..|++++.+||.|-.|..|++|.+...+..+..... ...+.. .+-..-...+ +.....++-||+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~------ 451 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS------ 451 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC------
Confidence 457999999999999999999999999999865432211111 111110 0110101111 223335688999
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
++|...+| +|+.++|++++.|+++++|.+.+.... ....+|. .+|-++.|+|-|.++++
T Consensus 452 ------GPVyg~sF--sPd~rfLlScSED~svRLWsl~t~s~~--V~y~GH~-----------~PVwdV~F~P~GyYFat 510 (707)
T KOG0263|consen 452 ------GPVYGCSF--SPDRRFLLSCSEDSSVRLWSLDTWSCL--VIYKGHL-----------APVWDVQFAPRGYYFAT 510 (707)
T ss_pred ------Cceeeeee--cccccceeeccCCcceeeeecccceeE--EEecCCC-----------cceeeEEecCCceEEEe
Confidence 99999999 899999999999999999999987743 3344665 78999999999999999
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
++. |++.++|... ...+.+.+ .+|-+.+.|+.|+|+..++++| .|.++++||+. ++..+++| .+|
T Consensus 511 as~--D~tArLWs~d---~~~PlRif-aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~-~G~~VRiF-------~GH 576 (707)
T KOG0263|consen 511 ASH--DQTARLWSTD---HNKPLRIF-AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS-TGNSVRIF-------TGH 576 (707)
T ss_pred cCC--Cceeeeeecc---cCCchhhh-cccccccceEEECCcccccccCCCCceEEEEEcC-CCcEEEEe-------cCC
Confidence 988 9999999998 67899999 8999999999999999999999 99999999999 78889988 999
Q ss_pred CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-
Q 014005 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR- 345 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~- 345 (432)
.++|.+++|+|+| ++|++|+.||.|.+||+.++++ +..+.+| .+.|.++.||.||..||+|
T Consensus 577 ~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~~----v~~l~~H-------------t~ti~SlsFS~dg~vLasgg 638 (707)
T KOG0263|consen 577 KGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGSL----VKQLKGH-------------TGTIYSLSFSRDGNVLASGG 638 (707)
T ss_pred CCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCcc----hhhhhcc-------------cCceeEEEEecCCCEEEecC
Confidence 9999999999999 9999999999999999999887 6888887 8999999999999999997
Q ss_pred eCCeEEEEec
Q 014005 346 DYMNLKVFRY 355 (432)
Q Consensus 346 ~~~~i~iwd~ 355 (432)
.|++|++||+
T Consensus 639 ~DnsV~lWD~ 648 (707)
T KOG0263|consen 639 ADNSVRLWDL 648 (707)
T ss_pred CCCeEEEEEc
Confidence 5599999999
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.9e-35 Score=251.25 Aligned_cols=250 Identities=17% Similarity=0.281 Sum_probs=210.9
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
....+..|++++|+.+|..||+|+.||.+|||+...... .++..|.
T Consensus 231 s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~----------------------------~tl~~Hk------ 276 (524)
T KOG0273|consen 231 SVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI----------------------------STLGQHK------ 276 (524)
T ss_pred cCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhh----------------------------hhhhccC------
Confidence 344457899999999999999999999999999877543 4788899
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
++|.++.| +.+|.+|++++.|+++.+||..++..+....+.. .+-.++.|-.+..+...
T Consensus 277 ------gPI~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s-------------~~~lDVdW~~~~~F~ts 335 (524)
T KOG0273|consen 277 ------GPIFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHS-------------APALDVDWQSNDEFATS 335 (524)
T ss_pred ------CceEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEeeeecc-------------CCccceEEecCceEeec
Confidence 99999999 8999999999999999999999988766554431 23355666665555544
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
+. ++.++++.+. ...++.++ .+|.+.|+++.|+|.+..|+++ +|++++||.+. ...+.+-+ ..|
T Consensus 336 ~t---d~~i~V~kv~---~~~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~-~~~~~~~l-------~~H 400 (524)
T KOG0273|consen 336 ST---DGCIHVCKVG---EDRPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG-QSNSVHDL-------QAH 400 (524)
T ss_pred CC---CceEEEEEec---CCCcceee-ecccCceEEEEECCCCceEEEecCCCeeEeeecC-CCcchhhh-------hhh
Confidence 43 8999999998 77888888 7899999999999999999999 99999999988 45566544 899
Q ss_pred CcceEEEEEcCCCC--------cEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005 267 TEVITSAEFHPIYC--------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (432)
Q Consensus 267 ~~~v~~~~~~p~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d 338 (432)
+..|..+.|+|+|+ ..+++++.|++|++||+..+.. +..|..| ..+|.+++|||+
T Consensus 401 skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~----i~~f~kH-------------~~pVysvafS~~ 463 (524)
T KOG0273|consen 401 SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP----IHTLMKH-------------QEPVYSVAFSPN 463 (524)
T ss_pred ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce----eEeeccC-------------CCceEEEEecCC
Confidence 99999999999763 5799999999999999999886 6888887 899999999999
Q ss_pred CCEEEEeeC-CeEEEEec---CcceeEeec
Q 014005 339 GQHLLSRDY-MNLKVFRY---EPVMTLSFC 364 (432)
Q Consensus 339 g~~l~s~~~-~~i~iwd~---~~~~~~~~~ 364 (432)
|+|+|+|+- |.|.+|++ +.++++...
T Consensus 464 g~ylAsGs~dg~V~iws~~~~~l~~s~~~~ 493 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWSTKTGKLVKSYQGT 493 (524)
T ss_pred CcEEEecCCCCeeEeccccchheeEeecCC
Confidence 999999965 99999999 455555443
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2e-34 Score=234.51 Aligned_cols=244 Identities=17% Similarity=0.273 Sum_probs=214.6
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
...|..++|+|.|+++|+|+.|+...||++.+...- ...+..+++.+|+
T Consensus 97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~---------------------g~~~v~r~l~gHt---------- 145 (343)
T KOG0286|consen 97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE---------------------GNVRVSRELAGHT---------- 145 (343)
T ss_pred ceeEEEEEECCCCCeEEecCcCceeEEEeccccccc---------------------ccceeeeeecCcc----------
Confidence 568999999999999999999999999999865211 0123446799999
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC-CCcceeccee
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHGYHLEW 190 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~ 190 (432)
+.+.++.| -+ ...|+|++.|.+..+||+++++ .+..+.+|. +.|.+++++| +++.+++|+-
T Consensus 146 --gylScC~f--~d-D~~ilT~SGD~TCalWDie~g~--~~~~f~GH~-----------gDV~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 146 --GYLSCCRF--LD-DNHILTGSGDMTCALWDIETGQ--QTQVFHGHT-----------GDVMSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred --ceeEEEEE--cC-CCceEecCCCceEEEEEcccce--EEEEecCCc-----------ccEEEEecCCCCCCeEEeccc
Confidence 99999999 34 5589999999999999999998 555667777 8999999999 8999999998
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
|+..++||++ .+.|+++| .+|+..|++++|.|+|.-+++| +|+++++||++ .++.+.++. ...-..+
T Consensus 208 --D~~aklWD~R---~~~c~qtF-~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR-aD~~~a~ys-----~~~~~~g 275 (343)
T KOG0286|consen 208 --DKSAKLWDVR---SGQCVQTF-EGHESDINSVRFFPSGDAFATGSDDATCRLYDLR-ADQELAVYS-----HDSIICG 275 (343)
T ss_pred --ccceeeeecc---CcceeEee-cccccccceEEEccCCCeeeecCCCceeEEEeec-CCcEEeeec-----cCcccCC
Confidence 9999999999 88999999 8999999999999999999999 99999999999 777777772 2334567
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-C
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 348 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~ 348 (432)
|++++||..| ++|++|..|.++.+||.-.++. ...+.+| .+.|+++..+|||.-+++|+- .
T Consensus 276 itSv~FS~SG-RlLfagy~d~~c~vWDtlk~e~----vg~L~GH-------------eNRvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 276 ITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGER----VGVLAGH-------------ENRVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred ceeEEEcccc-cEEEeeecCCceeEeeccccce----EEEeecc-------------CCeeEEEEECCCCcEEEecchhH
Confidence 9999999999 9999999999999999988887 6888897 899999999999999999865 9
Q ss_pred eEEEEe
Q 014005 349 NLKVFR 354 (432)
Q Consensus 349 ~i~iwd 354 (432)
+++||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.5e-34 Score=228.83 Aligned_cols=269 Identities=14% Similarity=0.194 Sum_probs=218.2
Q ss_pred CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEc
Q 014005 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA 124 (432)
Q Consensus 45 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s 124 (432)
-+|++++.|.+||+|...++. |..+++-.. ..|+.+.. .
T Consensus 11 viLvsA~YDhTIRfWqa~tG~---------------------------C~rTiqh~d------------sqVNrLei--T 49 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI---------------------------CSRTIQHPD------------SQVNRLEI--T 49 (311)
T ss_pred eEEEeccCcceeeeeehhcCe---------------------------EEEEEecCc------------cceeeEEE--c
Confidence 479999999999999999876 557777655 89999999 8
Q ss_pred CCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeeccc
Q 014005 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (432)
Q Consensus 125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~ 204 (432)
|+++.|++++. .+|++||+.++....+..+..+. ..|..+.|..+++++++|+. ||+++|||++
T Consensus 50 pdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~-----------kNVtaVgF~~dgrWMyTgse--Dgt~kIWdlR-- 113 (311)
T KOG0315|consen 50 PDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHT-----------KNVTAVGFQCDGRWMYTGSE--DGTVKIWDLR-- 113 (311)
T ss_pred CCcchhhhccC-CeeEEEEccCCCCCceeEEeccC-----------CceEEEEEeecCeEEEecCC--CceEEEEecc--
Confidence 99999998876 67999999998877777777777 89999999999999999999 9999999999
Q ss_pred ccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEE
Q 014005 205 VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 283 (432)
Q Consensus 205 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 283 (432)
...|.+.+ .|...|+++..+|+...|++| .+|.|++||+. ...+...+ +......|.++...||| .+|
T Consensus 114 -~~~~qR~~--~~~spVn~vvlhpnQteLis~dqsg~irvWDl~-~~~c~~~l------iPe~~~~i~sl~v~~dg-sml 182 (311)
T KOG0315|consen 114 -SLSCQRNY--QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG-ENSCTHEL------IPEDDTSIQSLTVMPDG-SML 182 (311)
T ss_pred -Ccccchhc--cCCCCcceEEecCCcceEEeecCCCcEEEEEcc-CCcccccc------CCCCCcceeeEEEcCCC-cEE
Confidence 66777776 577999999999999999999 99999999999 56555543 24445679999999999 999
Q ss_pred EEEeCCCeEEEEEccccccc--cccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec----C
Q 014005 284 AYSSSRGFVRLVDMRQSALC--DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY----E 356 (432)
Q Consensus 284 ~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~----~ 356 (432)
+.+...|+.++|++-..... ..++..++.| ...+..+.+|||++|||++ +|.+++||+. +
T Consensus 183 ~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah-------------~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k 249 (311)
T KOG0315|consen 183 AAANNKGNCYVWRLLNHQTASELEPVHKFQAH-------------NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK 249 (311)
T ss_pred EEecCCccEEEEEccCCCccccceEhhheecc-------------cceEEEEEECCCCcEEEeecCCceEEEEecCCcee
Confidence 99999999999999864421 1123444554 8899999999999999997 5699999999 3
Q ss_pred cceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 357 PVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
....+..|..++|-..| +...-|++||+.|+..++|+.
T Consensus 250 le~~l~gh~rWvWdc~F-----------S~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 250 LELVLTGHQRWVWDCAF-----------SADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred eEEEeecCCceEEeeee-----------ccCccEEEecCCCCceeeccc
Confidence 33344444433222111 112238999999999999993
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.8e-33 Score=227.97 Aligned_cols=262 Identities=14% Similarity=0.192 Sum_probs=212.5
Q ss_pred ccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
....|++.|+.+.|+|+|.+||+|+.|+.|.+|+..... +....+++|.
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--------------------------eN~~~lkgHs----- 90 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--------------------------ENFWVLKGHS----- 90 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--------------------------cceeeecccc-----
Confidence 345789999999999999999999999999999976532 2346788999
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce-
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG- 185 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 185 (432)
+.|..+.| ++|++.+++++.|++|+.||+++++ ....+..|. .-+..+....-+..+
T Consensus 91 -------gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~~tG~--~~rk~k~h~-----------~~vNs~~p~rrg~~lv 148 (338)
T KOG0265|consen 91 -------GAVMELHG--MRDGSHILSCGTDKTVRGWDAETGK--RIRKHKGHT-----------SFVNSLDPSRRGPQLV 148 (338)
T ss_pred -------ceeEeeee--ccCCCEEEEecCCceEEEEecccce--eeehhcccc-----------ceeeecCccccCCeEE
Confidence 99999999 8999999999999999999999998 455566665 566666655445444
Q ss_pred ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (432)
Q Consensus 186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (432)
.+++. |+++++||++ ...+++++ .....++++.|..++..+.+| -|+.|++||++ .+....++ .
T Consensus 149 ~Sgsd--D~t~kl~D~R---~k~~~~t~--~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r-~~d~~~~l-------s 213 (338)
T KOG0265|consen 149 CSGSD--DGTLKLWDIR---KKEAIKTF--ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLR-KNDGLYTL-------S 213 (338)
T ss_pred EecCC--CceEEEEeec---ccchhhcc--ccceeEEEEEecccccceeeccccCceeeeccc-cCcceEEe-------e
Confidence 44555 9999999999 66777765 456789999999999999999 99999999999 56677766 9
Q ss_pred CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
+|...|+.+..+|+| ..+.+-+.|.++++||++-.....+.++.+++|.-. .......++|+|+++++.+
T Consensus 214 Gh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn---------feknlL~cswsp~~~~i~a 283 (338)
T KOG0265|consen 214 GHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN---------FEKNLLKCSWSPNGTKITA 283 (338)
T ss_pred cccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhh---------hhhhcceeeccCCCCcccc
Confidence 999999999999999 999999999999999999644433336788875100 1234567899999999999
Q ss_pred e-eCCeEEEEec---CcceeEeecce
Q 014005 345 R-DYMNLKVFRY---EPVMTLSFCGI 366 (432)
Q Consensus 345 ~-~~~~i~iwd~---~~~~~~~~~~~ 366 (432)
| .|..+++||. ..+..+..|..
T Consensus 284 gs~dr~vyvwd~~~r~~lyklpGh~g 309 (338)
T KOG0265|consen 284 GSADRFVYVWDTTSRRILYKLPGHYG 309 (338)
T ss_pred ccccceEEEeecccccEEEEcCCcce
Confidence 8 5599999999 55556666653
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.1e-34 Score=243.32 Aligned_cols=278 Identities=16% Similarity=0.245 Sum_probs=230.2
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
.-.|..|.|.|+|+.|++|+..|.+.+|+...- .+...++.|.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f---------------------------nFEtilQaHD---------- 138 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF---------------------------NFETILQAHD---------- 138 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee---------------------------eHHHHhhhhc----------
Confidence 457999999999999999999999999997442 2234578898
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
..|.++.| ++++.++++|+.+|.|++|+......+.+..+. ...|++++|+|....+++++.
T Consensus 139 --s~Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh-------------~eaIRdlafSpnDskF~t~Sd- 200 (464)
T KOG0284|consen 139 --SPVRTMKW--SHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHH-------------AEAIRDLAFSPNDSKFLTCSD- 200 (464)
T ss_pred --ccceeEEE--ccCCCEEEEcCCCceEEecccchhhhHHhhHhh-------------hhhhheeccCCCCceeEEecC-
Confidence 99999999 899999999999999999998866544433322 268999999999988999888
Q ss_pred ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (432)
||.++|||.. ..+..+.+ .+|.-.|.+++|+|....+++| .|..|++||.+ ++.|+.++ .+|...|
T Consensus 201 -Dg~ikiWdf~---~~kee~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr-Sg~cl~tl-------h~HKntV 267 (464)
T KOG0284|consen 201 -DGTIKIWDFR---MPKEERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR-SGSCLATL-------HGHKNTV 267 (464)
T ss_pred -CCeEEEEecc---CCchhhee-ccCCCCcceeccCCccceeEEccCCceeEeecCC-Ccchhhhh-------hhccceE
Confidence 9999999998 55666666 8999999999999999999999 99999999999 78888765 8999999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC-EEEEe-eCC
Q 014005 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR-DYM 348 (432)
Q Consensus 271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~s~-~~~ 348 (432)
..+.|+|++ ++|+++|.|..++++|+|+.+. +..+++| ...|+++.|+|-.. +|++| .||
T Consensus 268 l~~~f~~n~-N~Llt~skD~~~kv~DiR~mkE----l~~~r~H-------------kkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 268 LAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKE----LFTYRGH-------------KKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred EEEEEcCCC-CeeEEccCCceEEEEehhHhHH----HHHhhcc-------------hhhheeeccccccccceeeccCCC
Confidence 999999999 9999999999999999997766 6889997 88999999999654 55554 669
Q ss_pred eEEEEec---CcceeEe-ecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005 349 NLKVFRY---EPVMTLS-FCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG 406 (432)
Q Consensus 349 ~i~iwd~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 406 (432)
.|..|.+ +++..+. .|...+|-..+ ....-.+++|+.|.+++.|..+
T Consensus 330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~-----------hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAY-----------HPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ceEEEeccccccccCCCcccccceeeeec-----------cccceeEeecCCCcceeeeccC
Confidence 9999999 5555443 34333333222 2233358899999999999844
No 19
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.8e-34 Score=248.71 Aligned_cols=290 Identities=16% Similarity=0.175 Sum_probs=231.6
Q ss_pred CCccccCCCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005 25 PDEELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (432)
Q Consensus 25 ~~~~~~h~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~ 103 (432)
....-+|+..|+++.|.| .+.+|++|+.|+.|+||++... .+++++|.+|.
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~--------------------------~~~lrtf~gH~-- 258 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD--------------------------RRCLRTFKGHR-- 258 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC--------------------------cceehhhhcch--
Confidence 344457999999999999 8999999999999999999873 35779999999
Q ss_pred ccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC-
Q 014005 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF- 182 (432)
Q Consensus 104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 182 (432)
.+|.+++| +.+|..|++++.|+.+++||+++|++....... ..+.++.|+|++
T Consensus 259 ----------k~Vrd~~~--s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~--------------~~~~cvkf~pd~~ 312 (503)
T KOG0282|consen 259 ----------KPVRDASF--NNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD--------------KVPTCVKFHPDNQ 312 (503)
T ss_pred ----------hhhhhhhc--cccCCeeeeeecceeeeeeccccceEEEEEecC--------------CCceeeecCCCCC
Confidence 99999999 899999999999999999999999966544433 567889999998
Q ss_pred cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC
Q 014005 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (432)
Q Consensus 183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~ 261 (432)
..++.|+. ++.|+.||++ .++.++.+ ..|-+.|..+.|-++|+.++++ +|+++++|+.+ ....++.+
T Consensus 313 n~fl~G~s--d~ki~~wDiR---s~kvvqeY-d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~-~~v~ik~i----- 380 (503)
T KOG0282|consen 313 NIFLVGGS--DKKIRQWDIR---SGKVVQEY-DRHLGAILDITFVDEGRRFISSSDDKSVRIWENR-IPVPIKNI----- 380 (503)
T ss_pred cEEEEecC--CCcEEEEecc---chHHHHHH-HhhhhheeeeEEccCCceEeeeccCccEEEEEcC-CCccchhh-----
Confidence 66677777 9999999999 77888888 8899999999999999999999 99999999999 33333321
Q ss_pred CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (432)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 341 (432)
.....-...++..+|++ +++++-+.|+.|.++.+... ......+.|++|.. .+.-..+.|||||++
T Consensus 381 -~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~-~r~nkkK~feGh~v-----------aGys~~v~fSpDG~~ 446 (503)
T KOG0282|consen 381 -ADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPP-FRLNKKKRFEGHSV-----------AGYSCQVDFSPDGRT 446 (503)
T ss_pred -cchhhccCcceecCCCC-CeehhhccCceEEEEecccc-cccCHhhhhcceec-----------cCceeeEEEcCCCCe
Confidence 12333346789999999 99999999999999986532 12223577888721 345668999999999
Q ss_pred EEEeeC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 342 LLSRDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 342 l~s~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
|++|+. |.+.+||. +.+..++.|.. .-+...|-.....-++|++.+|.|++|+
T Consensus 447 l~SGdsdG~v~~wdwkt~kl~~~lkah~~----------~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 447 LCSGDSDGKVNFWDWKTTKLVSKLKAHDQ----------PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEeecCCccEEEeechhhhhhhccccCCc----------ceEEEEecCCCcceeEecccCceeEecC
Confidence 999954 99999999 66667777642 0111122222334589999999999996
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7e-33 Score=253.87 Aligned_cols=249 Identities=16% Similarity=0.168 Sum_probs=202.9
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
...|+++|..+.|+|+.++|++++.|+++|+|.+.+.. ++..++||.
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s---------------------------~~V~y~GH~------ 493 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS---------------------------CLVIYKGHL------ 493 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccce---------------------------eEEEecCCC------
Confidence 56899999999999999999999999999999998854 557889999
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
.+|+.+.| +|.|-+|||++.|++.++|........+ .+.+|- +.+.++.|+|+..++++
T Consensus 494 ------~PVwdV~F--~P~GyYFatas~D~tArLWs~d~~~PlR--ifaghl-----------sDV~cv~FHPNs~Y~aT 552 (707)
T KOG0263|consen 494 ------APVWDVQF--APRGYYFATASHDQTARLWSTDHNKPLR--IFAGHL-----------SDVDCVSFHPNSNYVAT 552 (707)
T ss_pred ------cceeeEEe--cCCceEEEecCCCceeeeeecccCCchh--hhcccc-----------cccceEEECCccccccc
Confidence 99999999 7899999999999999999988765333 344444 78999999999999999
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
|+. |.+|++||.. ++..++.| .+|.+.|.+++|+|+|++|++| .|+.|.+||+. .+..+..+ .+|
T Consensus 553 GSs--D~tVRlWDv~---~G~~VRiF-~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~-~~~~v~~l-------~~H 618 (707)
T KOG0263|consen 553 GSS--DRTVRLWDVS---TGNSVRIF-TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA-NGSLVKQL-------KGH 618 (707)
T ss_pred CCC--CceEEEEEcC---CCcEEEEe-cCCCCceEEEEEcCCCceEeecccCCcEEEEEcC-CCcchhhh-------hcc
Confidence 988 9999999999 88999999 9999999999999999999999 99999999999 66666654 899
Q ss_pred CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccc--cceeecccc---cc--cCCccceeeeecceeEEEEcCCC
Q 014005 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH--SARILRDAA---ES--HGSKSFFTEIIASISDIKFANDG 339 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~h~---~~--~~~~~~~~~~~~~v~~~~~s~dg 339 (432)
.+.|.++.|+.+| .+||+|+.|++|++||+..-..... ....-..|. +. ......|..-..+|..+.|...+
T Consensus 619 t~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrN 697 (707)
T KOG0263|consen 619 TGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRN 697 (707)
T ss_pred cCceeEEEEecCC-CEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccc
Confidence 9999999999999 9999999999999999885332100 000000000 10 11113344445688888888766
Q ss_pred CEEEEe
Q 014005 340 QHLLSR 345 (432)
Q Consensus 340 ~~l~s~ 345 (432)
-.|+.|
T Consensus 698 l~L~~g 703 (707)
T KOG0263|consen 698 LLLAVG 703 (707)
T ss_pred eeEEec
Confidence 555544
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.7e-32 Score=235.23 Aligned_cols=300 Identities=18% Similarity=0.282 Sum_probs=225.4
Q ss_pred ccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccC
Q 014005 10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP 89 (432)
Q Consensus 10 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 89 (432)
.=++|||+..++ .|+.-|.|+.|+|||.++|+++.||+|.|||=.+++.+
T Consensus 176 eGPPFKFk~s~r--------~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v---------------------- 225 (603)
T KOG0318|consen 176 EGPPFKFKSSFR--------EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV---------------------- 225 (603)
T ss_pred eCCCeeeeeccc--------ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE----------------------
Confidence 345788887777 67889999999999999999999999999998887644
Q ss_pred Ccceeeeee---cCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccc
Q 014005 90 EYRYKTEFQ---SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 166 (432)
Q Consensus 90 ~~~~~~~~~---~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 166 (432)
..+. +|+ +.|.+++| +||++.+++++.|.+++|||+.+.++.+...+...-
T Consensus 226 -----g~l~~~~aHk------------GsIfalsW--sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v------- 279 (603)
T KOG0318|consen 226 -----GELEDSDAHK------------GSIFALSW--SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV------- 279 (603)
T ss_pred -----EEecCCCCcc------------ccEEEEEE--CCCCceEEEecCCceEEEEEeeccceEEEeecCCch-------
Confidence 4454 788 99999999 899999999999999999999998765554443211
Q ss_pred cccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEe
Q 014005 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN 245 (432)
Q Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd 245 (432)
......+.|. ...+++.+. +|.+.+++.. .....+++ .+|...|+++..+|++.++.+| .||.|.-||
T Consensus 280 ---~dqqvG~lWq--kd~lItVSl--~G~in~ln~~---d~~~~~~i-~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 280 ---EDQQVGCLWQ--KDHLITVSL--SGTINYLNPS---DPSVLKVI-SGHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred ---hceEEEEEEe--CCeEEEEEc--CcEEEEeccc---CCChhhee-cccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 1233344444 556666666 8999999998 55577777 8999999999999999999999 999999999
Q ss_pred CCCCCcee-------------------------------eEeecCCCCc-------------------------------
Q 014005 246 LEISDQCF-------------------------------NIVDMKPSNM------------------------------- 263 (432)
Q Consensus 246 ~~~~~~~~-------------------------------~~~~~~~~~~------------------------------- 263 (432)
... +..- +.++++....
T Consensus 349 ~~~-g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 349 SGS-GTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD 427 (603)
T ss_pred cCC-ccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence 842 1110 1111100000
Q ss_pred ----CC--------CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeeccee
Q 014005 264 ----DD--------LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (432)
Q Consensus 264 ----~~--------~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~ 331 (432)
.. -.-...+++++|++ +.+|.|+.||.|+||.+....++. ......| .++|+
T Consensus 428 iv~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l~e--e~~~~~h-------------~a~iT 491 (603)
T KOG0318|consen 428 IVLLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDELKE--EAKLLEH-------------RAAIT 491 (603)
T ss_pred EEEEecCCcceeeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcccc--eeeeecc-------------cCCce
Confidence 00 01134578899999 999999999999999999766532 2334444 79999
Q ss_pred EEEEcCCCCEEEEeeC-CeEEEEec--Cc--ceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 332 DIKFANDGQHLLSRDY-MNLKVFRY--EP--VMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 332 ~~~~s~dg~~l~s~~~-~~i~iwd~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
.+++|||+.|||+|+. +.+.+||+ +. ...+.+| +.++..+..+.....++||+.|.+|.||+
T Consensus 492 ~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FH-----------takI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 492 DVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFH-----------TAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred EEEECCCCcEEEEeccCCcEEEEEcccCceecceeeee-----------eeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 9999999999999987 99999999 21 2222233 23444443344445799999999999999
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.3e-32 Score=245.82 Aligned_cols=295 Identities=16% Similarity=0.241 Sum_probs=232.3
Q ss_pred CcEEEEEEcCCCCEEEEeccc-ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 33 DIVSAIEFDKTGDYLAVGDRG-GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~t~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
..|..++|+..|++||.|+.. |.+-||+..+.. ++...++|.
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs---------------------------YVlKQQgH~---------- 350 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES---------------------------YVLKQQGHS---------- 350 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccc---------------------------eeeeccccc----------
Confidence 578899999999999998754 799999998865 346678999
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
..++++++ +|||+++++|+.||+|++||..++- .+..+..|. +.+..+.|+..+..+.+.+.
T Consensus 351 --~~i~~l~Y--SpDgq~iaTG~eDgKVKvWn~~Sgf--C~vTFteHt-----------s~Vt~v~f~~~g~~llssSL- 412 (893)
T KOG0291|consen 351 --DRITSLAY--SPDGQLIATGAEDGKVKVWNTQSGF--CFVTFTEHT-----------SGVTAVQFTARGNVLLSSSL- 412 (893)
T ss_pred --cceeeEEE--CCCCcEEEeccCCCcEEEEeccCce--EEEEeccCC-----------CceEEEEEEecCCEEEEeec-
Confidence 89999999 9999999999999999999999887 344455555 89999999999999999999
Q ss_pred ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
||+|+.||+. ..++.++|.....-...|++..|.|..+..| +.-.|.+|+++ +++.+.++ .+|.++
T Consensus 413 -DGtVRAwDlk---RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q-TGqllDiL-------sGHEgP 480 (893)
T KOG0291|consen 413 -DGTVRAWDLK---RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ-TGQLLDIL-------SGHEGP 480 (893)
T ss_pred -CCeEEeeeec---ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee-cCeeeehh-------cCCCCc
Confidence 9999999999 8889999866666788899999999999888 45579999999 88888877 999999
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CC
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~ 348 (432)
|.+++|+|.+ ..|++++.|.+|++||+-..... ..+++- ...+.+++|+|||+-||.++ ||
T Consensus 481 Vs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~---vEtl~i--------------~sdvl~vsfrPdG~elaVaTldg 542 (893)
T KOG0291|consen 481 VSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGT---VETLEI--------------RSDVLAVSFRPDGKELAVATLDG 542 (893)
T ss_pred ceeeEEcccc-CeEEeccccceEEEEEeeccCce---eeeEee--------------ccceeEEEEcCCCCeEEEEEecc
Confidence 9999999999 99999999999999999865321 355554 57899999999999999974 59
Q ss_pred eEEEEec-CcceeEeecceeeeehhhhhc-----------ccccccccceeeEEEEeecccceeeeeccCCeeeec
Q 014005 349 NLKVFRY-EPVMTLSFCGIYVWILRQLQH-----------SRFMSIYALSCVIYIITTLYLINLSALSAGMDSILQ 412 (432)
Q Consensus 349 ~i~iwd~-~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~ 412 (432)
.|.+||+ ...+.....+........... ..+..+.......+|++|...++|++|+.-.+++++
T Consensus 543 qItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 543 QITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred eEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence 9999999 222222111110000001111 122222222233368999999999999954444433
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.4e-32 Score=245.78 Aligned_cols=271 Identities=14% Similarity=0.241 Sum_probs=219.0
Q ss_pred CCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005 24 NPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (432)
Q Consensus 24 ~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~ 103 (432)
-..+...|...++|++++|||+++|||+.||.|+|||...+- |..+|..|+
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf---------------------------C~vTFteHt-- 392 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF---------------------------CFVTFTEHT-- 392 (893)
T ss_pred eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce---------------------------EEEEeccCC--
Confidence 345667899999999999999999999999999999998865 668999999
Q ss_pred ccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (432)
Q Consensus 104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 183 (432)
..|+.+.| +..|+.+++++.||+|+.||+.....-+..... . .-...+++..|.+.
T Consensus 393 ----------s~Vt~v~f--~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P--~----------p~QfscvavD~sGe 448 (893)
T KOG0291|consen 393 ----------SGVTAVQF--TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP--E----------PIQFSCVAVDPSGE 448 (893)
T ss_pred ----------CceEEEEE--EecCCEEEEeecCCeEEeeeecccceeeeecCC--C----------ceeeeEEEEcCCCC
Confidence 99999999 889999999999999999999887643332222 1 24567888899999
Q ss_pred ceecceeeccc-eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC
Q 014005 184 HGYHLEWTENM-ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (432)
Q Consensus 184 ~~~~~~~~~~~-~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~ 261 (432)
.+..|.. |. .|.+|+++ +++.+-.+ .+|.++|.+++|+|.+..|++| .|.+|++||+-......+++
T Consensus 449 lV~AG~~--d~F~IfvWS~q---TGqllDiL-sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl----- 517 (893)
T KOG0291|consen 449 LVCAGAQ--DSFEIFVWSVQ---TGQLLDIL-SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL----- 517 (893)
T ss_pred EEEeecc--ceEEEEEEEee---cCeeeehh-cCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-----
Confidence 9888876 54 89999999 88999999 9999999999999999999999 99999999997444455554
Q ss_pred CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCc-------cceeeeecceeEEE
Q 014005 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK-------SFFTEIIASISDIK 334 (432)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~-------~~~~~~~~~v~~~~ 334 (432)
.+...+..++|+|+| +.||+++.||.|.+||...+.. ...+.+.......+ ..-.......+.++
T Consensus 518 ---~i~sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~q----~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ 589 (893)
T KOG0291|consen 518 ---EIRSDVLAVSFRPDG-KELAVATLDGQITFFDIKEAVQ----VGSIDGRKDLSGGRKETDRITAENSAKGKTFTTIC 589 (893)
T ss_pred ---eeccceeEEEEcCCC-CeEEEEEecceEEEEEhhhcee----eccccchhhccccccccceeehhhcccCCceEEEE
Confidence 455679999999999 9999999999999999987654 23333311111111 00111235789999
Q ss_pred EcCCCCEEEEeeC-CeEEEEec---CcceeEeecce
Q 014005 335 FANDGQHLLSRDY-MNLKVFRY---EPVMTLSFCGI 366 (432)
Q Consensus 335 ~s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~~~ 366 (432)
+|+||.+|++|+. +.|++||+ ..++.++....
T Consensus 590 ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N 625 (893)
T KOG0291|consen 590 YSADGKCILAGGESNSICIYDVPEGVLLKKFQISDN 625 (893)
T ss_pred EcCCCCEEEecCCcccEEEEECchhheeeeEEeccc
Confidence 9999999999766 99999999 56777777554
No 24
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.7e-31 Score=236.73 Aligned_cols=278 Identities=21% Similarity=0.268 Sum_probs=225.1
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
.|.+.|++++|+|++++|++++.||.+++|++.+++. ...+..|.
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~---------------------------~~~~~~~~-------- 51 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL---------------------------LRTLKGHT-------- 51 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc---------------------------EEEEecCC--------
Confidence 5889999999999999999999999999999987653 25677787
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
..+..+.| .++++++++++.||.|++|++..++... .+..+. ..+.++.|++++.+++.+.
T Consensus 52 ----~~i~~~~~--~~~~~~l~~~~~~~~i~i~~~~~~~~~~--~~~~~~-----------~~i~~~~~~~~~~~~~~~~ 112 (289)
T cd00200 52 ----GPVRDVAA--SADGTYLASGSSDKTIRLWDLETGECVR--TLTGHT-----------SYVSSVAFSPDGRILSSSS 112 (289)
T ss_pred ----cceeEEEE--CCCCCEEEEEcCCCeEEEEEcCcccceE--EEeccC-----------CcEEEEEEcCCCCEEEEec
Confidence 88889999 7888999999999999999998764222 222233 5788999999988888888
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
. ++.+.+||+. ..+....+ ..|...+.+++|+|++.+++++ .|+.+++||++ ..+....+ ..|..
T Consensus 113 ~--~~~i~~~~~~---~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~-------~~~~~ 178 (289)
T cd00200 113 R--DKTIKVWDVE---TGKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR-TGKCVATL-------TGHTG 178 (289)
T ss_pred C--CCeEEEEECC---CcEEEEEe-ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc-ccccceeE-------ecCcc
Confidence 6 8999999998 56777777 6788899999999999999988 69999999998 55566555 67778
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-C
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~ 347 (432)
.+.++.|+|++ +.+++++.|+.|++||+++++. ...+..| ...+.+++|+|++.++++++ +
T Consensus 179 ~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~----~~~~~~~-------------~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 179 EVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKC----LGTLRGH-------------ENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred ccceEEECCCc-CEEEEecCCCcEEEEECCCCce----ecchhhc-------------CCceEEEEEcCCCcEEEEEcCC
Confidence 89999999998 8899999999999999998665 4666565 67899999999999999987 6
Q ss_pred CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 348 MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 348 ~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
+.+++||+ .++..+..+.. .+...........+++++.|+.+.+|+
T Consensus 241 ~~i~i~~~~~~~~~~~~~~~~~-----------~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 241 GTIRVWDLRTGECVQTLSGHTN-----------SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCceeEEEccccCC-----------cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999 34444543332 222222222234688899999999996
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.1e-32 Score=252.44 Aligned_cols=285 Identities=18% Similarity=0.276 Sum_probs=226.8
Q ss_pred CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
+...|.|+.|+|+|++|++++.|+.+++|+..+.+. .....+.+|.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------~~~~~l~~h~--------- 203 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------NLLRELSGHT--------- 203 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------------hhhccccccc---------
Confidence 367899999999999999999999999999966540 1224567898
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
..|.+++| +|+++++++++.|++|++||+... ...+..+..|. ..+.+++|+|++..+++|+.
T Consensus 204 ---~~v~~~~f--s~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~gH~-----------~~v~~~~f~p~g~~i~Sgs~ 266 (456)
T KOG0266|consen 204 ---RGVSDVAF--SPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLKGHS-----------TYVTSVAFSPDGNLLVSGSD 266 (456)
T ss_pred ---cceeeeEE--CCCCcEEEEecCCceEEEeeccCC-CeEEEEecCCC-----------CceEEEEecCCCCEEEEecC
Confidence 99999999 899999999999999999999333 12344455666 88999999999999999999
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCc--eeeEeecCCCCcCCCC
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDLT 267 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~--~~~~~~~~~~~~~~~~ 267 (432)
|++|++||++ .+++.+.+ .+|.+.|++++|+++++.++++ .|+.|++||+. ++. +.+.+ .++.
T Consensus 267 --D~tvriWd~~---~~~~~~~l-~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~-~~~~~~~~~~-------~~~~ 332 (456)
T KOG0266|consen 267 --DGTVRIWDVR---TGECVRKL-KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE-TGSKLCLKLL-------SGAE 332 (456)
T ss_pred --CCcEEEEecc---CCeEEEee-eccCCceEEEEECCCCCEEEEcCCCccEEEEECC-CCceeeeecc-------cCCC
Confidence 9999999999 78999999 8999999999999999999999 89999999999 555 34443 3443
Q ss_pred c--ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005 268 E--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (432)
Q Consensus 268 ~--~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~ 345 (432)
. .+++++|+|++ .+++++..|+.+++||++.+.. ...+.+|... ...+.+...++.|+++.+|
T Consensus 333 ~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~----~~~~~~~~~~----------~~~~~~~~~~~~~~~i~sg 397 (456)
T KOG0266|consen 333 NSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKS----VGTYTGHSNL----------VRCIFSPTLSTGGKLIYSG 397 (456)
T ss_pred CCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCcc----eeeecccCCc----------ceeEecccccCCCCeEEEE
Confidence 3 59999999999 9999999999999999998876 5788887221 0244555668899999998
Q ss_pred eC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeec--ccceeeeecc
Q 014005 346 DY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTL--YLINLSALSA 405 (432)
Q Consensus 346 ~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~i~~~~~ 405 (432)
.. +.|++||+ ..+..+..|. ....+.........++++++ .|+.+.+|..
T Consensus 398 ~~d~~v~~~~~~s~~~~~~l~~h~----------~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 398 SEDGSVYVWDSSSGGILQRLEGHS----------KAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred eCCceEEEEeCCccchhhhhcCCC----------CCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 55 99999999 5555666552 11222222222333566666 6788999874
No 26
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.7e-31 Score=211.53 Aligned_cols=283 Identities=16% Similarity=0.196 Sum_probs=228.5
Q ss_pred cccCCCcEEEEEEcCC-CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeee-ecCCcccc
Q 014005 28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFD 105 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~-g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~ 105 (432)
...|++.|..++|+|- |..||+|+.|+.||||+...+. .+.+...+ .+|+
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~------------------------s~~ck~vld~~hk---- 61 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD------------------------SWTCKTVLDDGHK---- 61 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC------------------------cEEEEEeccccch----
Confidence 4468889999999998 8999999999999999988533 34454444 3688
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 185 (432)
..|.+++| +|.|++|++++.|.++.||.-..+..+.+..+.+|. ..|.+++|++++.+|
T Consensus 62 --------rsVRsvAw--sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHE-----------nEVK~Vaws~sG~~L 120 (312)
T KOG0645|consen 62 --------RSVRSVAW--SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHE-----------NEVKCVAWSASGNYL 120 (312)
T ss_pred --------heeeeeee--cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccc-----------cceeEEEEcCCCCEE
Confidence 99999999 899999999999999999999988888888888888 999999999999999
Q ss_pred ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC--ceeeEeecCCCC
Q 014005 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPSN 262 (432)
Q Consensus 186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~--~~~~~~~~~~~~ 262 (432)
++++. |..|-||.........|...+ ..|...|..+.|+|...+|+++ .|++|++|+-...+ .+..++
T Consensus 121 ATCSR--DKSVWiWe~deddEfec~aVL-~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl------ 191 (312)
T KOG0645|consen 121 ATCSR--DKSVWIWEIDEDDEFECIAVL-QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL------ 191 (312)
T ss_pred EEeeC--CCeEEEEEecCCCcEEEEeee-ccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEe------
Confidence 99999 999999999877788899999 8999999999999999999999 99999999876222 355554
Q ss_pred cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (432)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 342 (432)
.+|.+.|.+++|+|.| ..|++++.|++++||...+.- .. .| ...+..+.|. +| .|
T Consensus 192 -~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~~------~~--~~-------------sr~~Y~v~W~-~~-~I 246 (312)
T KOG0645|consen 192 -DGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTDL------SG--MH-------------SRALYDVPWD-NG-VI 246 (312)
T ss_pred -cCccceEEEEEecCCC-ceEEEecCCcceEeeeeccCc------ch--hc-------------ccceEeeeec-cc-ce
Confidence 8999999999999999 999999999999999976321 11 12 5788999999 44 77
Q ss_pred EE-eeCCeEEEEecC-----ccee-----Eeecceeeeehhhhhccccccc-ccceeeEEEEeecccceeeeec
Q 014005 343 LS-RDYMNLKVFRYE-----PVMT-----LSFCGIYVWILRQLQHSRFMSI-YALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 343 ~s-~~~~~i~iwd~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
|+ |+|+.|++|.-. +.-. -..|+ ..+... +.....-.+++|+.||.+++|.
T Consensus 247 aS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe-----------~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 247 ASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHE-----------VDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred EeccCCCEEEEEEecCCCCCchHHHHHhhhcccc-----------cccceEEEcCCCCCceeecCCCceEEEEE
Confidence 77 477999999771 1111 11111 111111 1111223589999999999997
No 27
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.3e-32 Score=233.49 Aligned_cols=243 Identities=16% Similarity=0.237 Sum_probs=208.2
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
...|.++|+++.|+++|.++++|+.+|.|++|+.+-... ..+++|.
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV----------------------------k~~~ahh------ 179 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV----------------------------KIIQAHH------ 179 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh----------------------------HHhhHhh------
Confidence 457899999999999999999999999999999765432 3555554
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
...|.+++| +|+...|++++.||+|+|||....+.+... .+|. ..+++++|+|....+++
T Consensus 180 -----~eaIRdlaf--SpnDskF~t~SdDg~ikiWdf~~~kee~vL--~GHg-----------wdVksvdWHP~kgLias 239 (464)
T KOG0284|consen 180 -----AEAIRDLAF--SPNDSKFLTCSDDGTIKIWDFRMPKEERVL--RGHG-----------WDVKSVDWHPTKGLIAS 239 (464)
T ss_pred -----hhhhheecc--CCCCceeEEecCCCeEEEEeccCCchhhee--ccCC-----------CCcceeccCCccceeEE
Confidence 278999999 888889999999999999999876644332 4444 78999999999999999
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
++. |+.|++||.+ ++.|+.++ .+|...|..+.|+|++++|+++ .|..++++|++ +-+.+..+ .+|
T Consensus 240 gsk--DnlVKlWDpr---Sg~cl~tl-h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR-~mkEl~~~-------r~H 305 (464)
T KOG0284|consen 240 GSK--DNLVKLWDPR---SGSCLATL-HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR-TMKELFTY-------RGH 305 (464)
T ss_pred ccC--CceeEeecCC---Ccchhhhh-hhccceEEEEEEcCCCCeeEEccCCceEEEEehh-HhHHHHHh-------hcc
Confidence 999 8999999999 89999999 8999999999999999999999 99999999999 44444433 899
Q ss_pred CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceee-cccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~ 345 (432)
...++++.|+|-.+.+|.+|+.||.|..|.+...+. +..+ .+| ...|++++|+|=|..|++|
T Consensus 306 kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p----~~~i~~AH-------------d~~iwsl~~hPlGhil~tg 368 (464)
T KOG0284|consen 306 KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP----LGEIPPAH-------------DGEIWSLAYHPLGHILATG 368 (464)
T ss_pred hhhheeeccccccccceeeccCCCceEEEecccccc----ccCCCccc-------------ccceeeeeccccceeEeec
Confidence 999999999998889999999999999999884333 2222 233 8899999999999999998
Q ss_pred eC-CeEEEEec
Q 014005 346 DY-MNLKVFRY 355 (432)
Q Consensus 346 ~~-~~i~iwd~ 355 (432)
+. .++++|.-
T Consensus 369 snd~t~rfw~r 379 (464)
T KOG0284|consen 369 SNDRTVRFWTR 379 (464)
T ss_pred CCCcceeeecc
Confidence 54 99999977
No 28
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-31 Score=209.38 Aligned_cols=250 Identities=14% Similarity=0.175 Sum_probs=211.7
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
.++++|.++.|+-+|+|.++++.|++|++|+...+. ++.++.+|.
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~---------------------------liktYsghG-------- 59 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA---------------------------LIKTYSGHG-------- 59 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccc---------------------------eeeeecCCC--------
Confidence 467899999999999999999999999999998876 448999999
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
..|..++. +.|+..|++|+.|+.+.+||+.+|+ ....+..|. +.|..+.|+.+...+++|+
T Consensus 60 ----~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~TGk--v~Rr~rgH~-----------aqVNtV~fNeesSVv~Sgs 120 (307)
T KOG0316|consen 60 ----HEVLDAAL--SSDNSKFASCGGDKAVQVWDVNTGK--VDRRFRGHL-----------AQVNTVRFNEESSVVASGS 120 (307)
T ss_pred ----ceeeeccc--cccccccccCCCCceEEEEEcccCe--eeeeccccc-----------ceeeEEEecCcceEEEecc
Confidence 88999999 8899999999999999999999998 444556666 8999999999999999999
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
+ |..+++||.+.. ..++++++ ....+.|.++.++ +..+++| .||+++.||++ .+.... .-...
T Consensus 121 f--D~s~r~wDCRS~-s~ePiQil-dea~D~V~Si~v~--~heIvaGS~DGtvRtydiR-~G~l~s---------Dy~g~ 184 (307)
T KOG0316|consen 121 F--DSSVRLWDCRSR-SFEPIQIL-DEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIR-KGTLSS---------DYFGH 184 (307)
T ss_pred c--cceeEEEEcccC-CCCccchh-hhhcCceeEEEec--ccEEEeeccCCcEEEEEee-cceeeh---------hhcCC
Confidence 9 999999999866 66788888 7778889999885 4567888 99999999999 554433 34456
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~- 347 (432)
+|+++.|++++ +..+.++.|+++++.|-.+|++ ++.+.+|.+ ...-.+.+++.....+++|++
T Consensus 185 pit~vs~s~d~-nc~La~~l~stlrLlDk~tGkl----L~sYkGhkn-----------~eykldc~l~qsdthV~sgSED 248 (307)
T KOG0316|consen 185 PITSVSFSKDG-NCSLASSLDSTLRLLDKETGKL----LKSYKGHKN-----------MEYKLDCCLNQSDTHVFSGSED 248 (307)
T ss_pred cceeEEecCCC-CEEEEeeccceeeecccchhHH----HHHhccccc-----------ceeeeeeeecccceeEEeccCC
Confidence 89999999999 9999999999999999999998 789999822 223346677777889999865
Q ss_pred CeEEEEec---CcceeEeecc
Q 014005 348 MNLKVFRY---EPVMTLSFCG 365 (432)
Q Consensus 348 ~~i~iwd~---~~~~~~~~~~ 365 (432)
|.+++||+ ..+..++.+.
T Consensus 249 G~Vy~wdLvd~~~~sk~~~~~ 269 (307)
T KOG0316|consen 249 GKVYFWDLVDETQISKLSVVS 269 (307)
T ss_pred ceEEEEEeccceeeeeeccCC
Confidence 99999999 4555555554
No 29
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-31 Score=244.42 Aligned_cols=273 Identities=15% Similarity=0.196 Sum_probs=205.4
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccc--------------------cchhhh---------cc
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI--------------------SRSELE---------KQ 80 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~--------------------~~~~~~---------~~ 80 (432)
.|.+.|+++.||+||+|||+|+.|+.||||.+...+....... ...... ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 6899999999999999999999999999999876221100000 000000 00
Q ss_pred cccc----ccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecC
Q 014005 81 MDFT----STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD 156 (432)
Q Consensus 81 ~~~~----~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 156 (432)
...+ -++.-..+++..|.||. +.|.+|+| +.+ ++|++++.|++|++|++....+.++..++
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSW--SKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn 409 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSW--SKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHN 409 (712)
T ss_pred CccccCCCccccccccchhhhhccc------------hhheeccc--ccC-CeeEeccccccEEeecCCCcceeeEEecC
Confidence 0000 01111456778899999 99999999 554 59999999999999999988877776664
Q ss_pred CCCccccccccccccccccccCCCC-CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEE
Q 014005 157 HFPFVSSENTLLAEKNFMNEHNPPS-FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS 235 (432)
Q Consensus 157 ~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 235 (432)
.-|++++|+|. ..|+++|+. |+.++||++. ..+...- ..-..-|++++|.|+|+..+.
T Consensus 410 --------------dfVTcVaFnPvDDryFiSGSL--D~KvRiWsI~---d~~Vv~W--~Dl~~lITAvcy~PdGk~avI 468 (712)
T KOG0283|consen 410 --------------DFVTCVAFNPVDDRYFISGSL--DGKVRLWSIS---DKKVVDW--NDLRDLITAVCYSPDGKGAVI 468 (712)
T ss_pred --------------CeeEEEEecccCCCcEeeccc--ccceEEeecC---cCeeEee--hhhhhhheeEEeccCCceEEE
Confidence 78999999995 789999999 9999999997 3333332 344578999999999999999
Q ss_pred E-cCCeEEEEeCCCCCceeeEeecCCC--CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc
Q 014005 236 A-DDLRINLWNLEISDQCFNIVDMKPS--NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312 (432)
Q Consensus 236 ~-~d~~i~lwd~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 312 (432)
| -+|.+++|+.. ..+....+.+... .-..|. .|++++|.|..+..+++.+.|..|||+|.++..+ +..|++
T Consensus 469 Gt~~G~C~fY~t~-~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l----v~KfKG 542 (712)
T KOG0283|consen 469 GTFNGYCRFYDTE-GLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL----VHKFKG 542 (712)
T ss_pred EEeccEEEEEEcc-CCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhh----hhhhcc
Confidence 9 99999999998 5554444433222 212233 7999999998766677888999999999987776 577776
Q ss_pred cccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 313 h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
+.+ ...-....|+.||++|+++++ ..|++|+.
T Consensus 543 ~~n-----------~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 543 FRN-----------TSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred ccc-----------CCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 311 244567899999999999855 99999997
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.8e-31 Score=234.02 Aligned_cols=258 Identities=15% Similarity=0.250 Sum_probs=220.5
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..+++.|.|+.|+|...+++++-.+|.+.||+.++...+ ..++-.+
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmV---------------------------ksfeV~~------- 55 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV---------------------------KSFEVSE------- 55 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccceee---------------------------eeeeecc-------
Confidence 357899999999999999999999999999999997643 5565555
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
.+|.+..| -...+++++|+.|..|++|+..+.+ ++..+..|+ ..|++++.+|...++.++
T Consensus 56 -----~PvRa~kf--iaRknWiv~GsDD~~IrVfnynt~e--kV~~FeAH~-----------DyIR~iavHPt~P~vLts 115 (794)
T KOG0276|consen 56 -----VPVRAAKF--IARKNWIVTGSDDMQIRVFNYNTGE--KVKTFEAHS-----------DYIRSIAVHPTLPYVLTS 115 (794)
T ss_pred -----cchhhhee--eeccceEEEecCCceEEEEecccce--eeEEeeccc-----------cceeeeeecCCCCeEEec
Confidence 78889999 4667899999999999999999876 666666677 899999999999999999
Q ss_pred eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
+. |..|++||.+. ...|.++| .+|...|++++|+| |.+.++++ -|++|++|.+. ...+..++ ++|
T Consensus 116 SD--Dm~iKlW~we~--~wa~~qtf-eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg-s~~~nfTl-------~gH 182 (794)
T KOG0276|consen 116 SD--DMTIKLWDWEN--EWACEQTF-EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG-SPHPNFTL-------EGH 182 (794)
T ss_pred CC--ccEEEEeeccC--ceeeeeEE-cCcceEEEEEEecCCCccceeeeeccccEEEEEcC-CCCCceee-------ecc
Confidence 99 99999999986 67888999 89999999999999 56789999 89999999999 45555544 899
Q ss_pred CcceEEEEEcCCC-CcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005 267 TEVITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (432)
Q Consensus 267 ~~~v~~~~~~p~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~ 345 (432)
...|++++|-+-| ..+|++|+.|.+|+|||.++.. | ++++++| ...|+.+.|+|.-..+++|
T Consensus 183 ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-C---V~TLeGH-------------t~Nvs~v~fhp~lpiiisg 245 (794)
T KOG0276|consen 183 EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-C---VQTLEGH-------------TNNVSFVFFHPELPIIISG 245 (794)
T ss_pred ccCcceEEeccCCCcceEEecCCCceEEEeecchHH-H---HHHhhcc-------------cccceEEEecCCCcEEEEe
Confidence 9999999998755 3699999999999999999755 4 7999998 8899999999999999998
Q ss_pred eC-CeEEEEec---CcceeEeecceeeee
Q 014005 346 DY-MNLKVFRY---EPVMTLSFCGIYVWI 370 (432)
Q Consensus 346 ~~-~~i~iwd~---~~~~~~~~~~~~~~~ 370 (432)
+. |++|||+- +...++......+|.
T Consensus 246 sEDGTvriWhs~Ty~lE~tLn~gleRvW~ 274 (794)
T KOG0276|consen 246 SEDGTVRIWNSKTYKLEKTLNYGLERVWC 274 (794)
T ss_pred cCCccEEEecCcceehhhhhhcCCceEEE
Confidence 65 99999998 444555544443443
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.6e-33 Score=230.85 Aligned_cols=296 Identities=15% Similarity=0.249 Sum_probs=220.9
Q ss_pred cchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCC
Q 014005 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE 90 (432)
Q Consensus 11 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 90 (432)
...|+.....-.+..... ...+.|+|+++. ...+++|..|++|+|||.++..
T Consensus 177 dsNWr~Gr~~~~rinc~S-e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~------------------------- 228 (499)
T KOG0281|consen 177 ESNWRCGRHLLQRINCRS-ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE------------------------- 228 (499)
T ss_pred hcchhccceeeeeecCCc-ccCCceEEEEec--chhhhcccccCceEEeccccHH-------------------------
Confidence 456777654433322222 256789999986 5569999999999999988754
Q ss_pred cceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccc
Q 014005 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (432)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (432)
+...+.||+ +.|.|+.| +.+.+++|+.|.+|++||++++++.+. +-+|.
T Consensus 229 --c~~~L~GHt------------GSVLCLqy----d~rviisGSSDsTvrvWDv~tge~l~t--lihHc----------- 277 (499)
T KOG0281|consen 229 --CLKILTGHT------------GSVLCLQY----DERVIVSGSSDSTVRVWDVNTGEPLNT--LIHHC----------- 277 (499)
T ss_pred --HHHhhhcCC------------CcEEeeec----cceEEEecCCCceEEEEeccCCchhhH--Hhhhc-----------
Confidence 457889999 99999999 567999999999999999999984333 33333
Q ss_pred cccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCC
Q 014005 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 249 (432)
Q Consensus 171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~ 249 (432)
..|..+.|+ ..++++++. |.++.+||+.......+.+.+ .+|...|+.+.|+. ++++++ .|.+|++|++. +
T Consensus 278 eaVLhlrf~--ng~mvtcSk--DrsiaVWdm~sps~it~rrVL-vGHrAaVNvVdfd~--kyIVsASgDRTikvW~~s-t 349 (499)
T KOG0281|consen 278 EAVLHLRFS--NGYMVTCSK--DRSIAVWDMASPTDITLRRVL-VGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTS-T 349 (499)
T ss_pred ceeEEEEEe--CCEEEEecC--CceeEEEeccCchHHHHHHHH-hhhhhheeeecccc--ceEEEecCCceEEEEecc-c
Confidence 556666664 356777777 999999999877667777777 89999999999964 599999 99999999999 7
Q ss_pred CceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecc
Q 014005 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (432)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~ 329 (432)
..+++++ .+|...|-|+.+. + +++++|+.|.+|++||+..|.. ++.+++| ..-
T Consensus 350 ~efvRtl-------~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~c----LRvLeGH-------------EeL 402 (499)
T KOG0281|consen 350 CEFVRTL-------NGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGAC----LRVLEGH-------------EEL 402 (499)
T ss_pred eeeehhh-------hcccccceehhcc--C-eEEEecCCCceEEEEeccccHH----HHHHhch-------------HHh
Confidence 8888876 8999999888774 5 8999999999999999999886 7999998 788
Q ss_pred eeEEEEcCCCCEEEEeeC-CeEEEEecCcceeEeecceeeeehhhhhcc-cccccccceeeEEEEeecccceeeeec
Q 014005 330 ISDIKFANDGQHLLSRDY-MNLKVFRYEPVMTLSFCGIYVWILRQLQHS-RFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 330 v~~~~~s~dg~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
|.++.|. .+.+++|.+ |+|++||+..-..-+......-+.....++ ++..+-+ .-+.+++.+.|..|-||+
T Consensus 403 vRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 403 VRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred hhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence 9999997 568999866 999999991100001111000000000000 1111111 124699999999999999
No 32
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.8e-31 Score=226.66 Aligned_cols=296 Identities=15% Similarity=0.163 Sum_probs=229.3
Q ss_pred CccccCCCcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005 26 DEELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (432)
Q Consensus 26 ~~~~~h~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~ 104 (432)
.+.+.|+.+|.+.+|+|... .|++|+.|-+.++|++...... ....+.- +......++
T Consensus 172 ~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~-----~~~q~~l------------rh~~~~~~~---- 230 (524)
T KOG0273|consen 172 AKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNI-----GSTQLVL------------RHCIREGGK---- 230 (524)
T ss_pred eeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccc-----cchhhhh------------hhhhhhhcc----
Confidence 34566999999999999877 8999999999999998752110 0000000 000001111
Q ss_pred cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
+......|++++| +.+|..|++|+.||.+++|+........ +..|. ++|.++.|+..+.+
T Consensus 231 ----s~~~nkdVT~L~W--n~~G~~LatG~~~G~~riw~~~G~l~~t---l~~Hk-----------gPI~slKWnk~G~y 290 (524)
T KOG0273|consen 231 ----SVPSNKDVTSLDW--NNDGTLLATGSEDGEARIWNKDGNLIST---LGQHK-----------GPIFSLKWNKKGTY 290 (524)
T ss_pred ----cCCccCCcceEEe--cCCCCeEEEeecCcEEEEEecCchhhhh---hhccC-----------CceEEEEEcCCCCE
Confidence 1111267999999 8999999999999999999988765433 33444 89999999999999
Q ss_pred eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (432)
+++++. |+++.+||.. ++...+.+ .-|...-..+.|-.+. .+++. .|+.|+++.+. .+.+..++
T Consensus 291 ilS~~v--D~ttilwd~~---~g~~~q~f-~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~-~~~P~~t~------- 355 (524)
T KOG0273|consen 291 ILSGGV--DGTTILWDAH---TGTVKQQF-EFHSAPALDVDWQSND-EFATSSTDGCIHVCKVG-EDRPVKTF------- 355 (524)
T ss_pred EEeccC--CccEEEEecc---CceEEEee-eeccCCccceEEecCc-eEeecCCCceEEEEEec-CCCcceee-------
Confidence 999999 9999999998 67777777 5677666778887665 45655 99999999999 67777766
Q ss_pred CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC---
Q 014005 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--- 340 (432)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~--- 340 (432)
.+|.+.|.++.|+|.+ .+|++++.|++++||.+....- ...+..| ...|..+.|+|+|.
T Consensus 356 ~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~----~~~l~~H-------------skei~t~~wsp~g~v~~ 417 (524)
T KOG0273|consen 356 IGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNS----VHDLQAH-------------SKEIYTIKWSPTGPVTS 417 (524)
T ss_pred ecccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcc----hhhhhhh-------------ccceeeEeecCCCCccC
Confidence 8899999999999999 9999999999999999876554 5778887 78899999999753
Q ss_pred ------EEEEe-eCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005 341 ------HLLSR-DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG 406 (432)
Q Consensus 341 ------~l~s~-~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 406 (432)
.|+++ .|++|++||+ .++.++-.|. .++.++.+....-++++|+.||.|++|+..
T Consensus 418 n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~-----------~pVysvafS~~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 418 NPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQ-----------EPVYSVAFSPNGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred CCcCCceEEEeecCCeEEEEEccCCceeEeeccCC-----------CceEEEEecCCCcEEEecCCCCeeEecccc
Confidence 56664 6699999999 5666665454 366666666566689999999999999954
No 33
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.8e-30 Score=207.54 Aligned_cols=245 Identities=15% Similarity=0.290 Sum_probs=205.4
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
.|+..|++++|+|.|++||+|+.|.++.||.-..+ +++++.++.||+
T Consensus 59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~-------------------------efecv~~lEGHE-------- 105 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG-------------------------EFECVATLEGHE-------- 105 (312)
T ss_pred cchheeeeeeecCCCcEEEEeeccceEEEeecCCC-------------------------ceeEEeeeeccc--------
Confidence 68999999999999999999999999999997765 467889999999
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc-ceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..|-+++| +++|.+||++++|+.|-||.+..+ +......++.|. ..|..+.|+|....|+++
T Consensus 106 ----nEVK~Vaw--s~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht-----------qDVK~V~WHPt~dlL~S~ 168 (312)
T KOG0645|consen 106 ----NEVKCVAW--SASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT-----------QDVKHVIWHPTEDLLFSC 168 (312)
T ss_pred ----cceeEEEE--cCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc-----------ccccEEEEcCCcceeEEe
Confidence 99999999 899999999999999999999744 466677777777 789999999999999999
Q ss_pred eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
+. |++|++|+-.......|.+++ .+|...|.+++|++.|..|+++ +|++++||... ..-. ..|.
T Consensus 169 SY--DnTIk~~~~~~dddW~c~~tl-~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-~~~~-----------~~~s 233 (312)
T KOG0645|consen 169 SY--DNTIKVYRDEDDDDWECVQTL-DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-TDLS-----------GMHS 233 (312)
T ss_pred cc--CCeEEEEeecCCCCeeEEEEe-cCccceEEEEEecCCCceEEEecCCcceEeeeec-cCcc-----------hhcc
Confidence 99 999999998755588999999 8999999999999999999999 99999999876 2211 4567
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc--ccccc-eeecccccccCCccceeeeecceeEEEEcCC-CCEEE
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--CDHSA-RILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLL 343 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~-~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~ 343 (432)
..+..+.|. + ..|++++.|+.|++|.-..... ..+.+ +.-..| ...|++++|.|. ...|+
T Consensus 234 r~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH-------------e~dVNsV~w~p~~~~~L~ 297 (312)
T KOG0645|consen 234 RALYDVPWD-N--GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH-------------EVDVNSVQWNPKVSNRLA 297 (312)
T ss_pred cceEeeeec-c--cceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc-------------ccccceEEEcCCCCCcee
Confidence 789999998 4 5899999999999998664311 00001 122233 679999999995 55677
Q ss_pred Ee-eCCeEEEEec
Q 014005 344 SR-DYMNLKVFRY 355 (432)
Q Consensus 344 s~-~~~~i~iwd~ 355 (432)
+| +||.+++|.+
T Consensus 298 s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 298 SGGDDGIVNFWEL 310 (312)
T ss_pred ecCCCceEEEEEe
Confidence 76 5599999976
No 34
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=1.7e-29 Score=254.59 Aligned_cols=303 Identities=14% Similarity=0.132 Sum_probs=216.4
Q ss_pred ccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
....|.+.|.+++|+|+|++||+|+.|+.|+||+.+....... . .......+.+ .
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-----------~--------~~~~~~~~~~-~----- 532 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-----------D--------IHYPVVELAS-R----- 532 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-----------c--------cccceEEecc-c-----
Confidence 3456899999999999999999999999999999764211000 0 0001112222 2
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC-CCcce
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHG 185 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~ 185 (432)
..+.+++|.| +++.+|++++.||+|++||+.+++. +..+..|. +.|.+++|+| ++.++
T Consensus 533 -------~~v~~l~~~~-~~~~~las~~~Dg~v~lWd~~~~~~--~~~~~~H~-----------~~V~~l~~~p~~~~~L 591 (793)
T PLN00181 533 -------SKLSGICWNS-YIKSQVASSNFEGVVQVWDVARSQL--VTEMKEHE-----------KRVWSIDYSSADPTLL 591 (793)
T ss_pred -------CceeeEEecc-CCCCEEEEEeCCCeEEEEECCCCeE--EEEecCCC-----------CCEEEEEEcCCCCCEE
Confidence 6789999952 4578999999999999999987763 33344455 7899999996 67889
Q ss_pred ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeC-CCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (432)
Q Consensus 186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (432)
++++. |+.|++||++ .+.++..+ .. ...+.++.|+ +++..+++| .|+.|++||++.....+..+
T Consensus 592 ~Sgs~--Dg~v~iWd~~---~~~~~~~~-~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~------- 657 (793)
T PLN00181 592 ASGSD--DGSVKLWSIN---QGVSIGTI-KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM------- 657 (793)
T ss_pred EEEcC--CCEEEEEECC---CCcEEEEE-ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe-------
Confidence 99998 9999999998 56677776 33 4678999995 578999999 99999999998433344443
Q ss_pred CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc--ccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (432)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 341 (432)
.+|...|.++.|. ++ ..|++++.|+.|++||++.+.. ....+..+.+| ...+..++|+|++.+
T Consensus 658 ~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh-------------~~~i~~v~~s~~~~~ 722 (793)
T PLN00181 658 IGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH-------------TNVKNFVGLSVSDGY 722 (793)
T ss_pred cCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC-------------CCCeeEEEEcCCCCE
Confidence 7899999999997 55 7899999999999999985321 11125677776 788999999999999
Q ss_pred EEEeeC-CeEEEEec---CcceeEeecceeeeehhhhh--cccccccccceeeEEEEeecccceeeeec
Q 014005 342 LLSRDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQ--HSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 342 l~s~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
|++|+. +.|++|+. .++..+.............. ...+...........+++|+.+|+|++|+
T Consensus 723 lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 723 IATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 999855 99999998 23333322111000000000 01112222222223689999999999997
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=2.9e-31 Score=221.81 Aligned_cols=248 Identities=15% Similarity=0.176 Sum_probs=212.2
Q ss_pred cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccc
Q 014005 86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN 165 (432)
Q Consensus 86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 165 (432)
-+|..++..+.+++|. +.|.++++ .|.+++|++|+.|++|+|||+.+++++.. +.+|.
T Consensus 136 eWHapwKl~rVi~gHl------------gWVr~vav--dP~n~wf~tgs~DrtikIwDlatg~Lklt--ltGhi------ 193 (460)
T KOG0285|consen 136 EWHAPWKLYRVISGHL------------GWVRSVAV--DPGNEWFATGSADRTIKIWDLATGQLKLT--LTGHI------ 193 (460)
T ss_pred cccCcceehhhhhhcc------------ceEEEEee--CCCceeEEecCCCceeEEEEcccCeEEEe--ecchh------
Confidence 3566788889999999 99999999 88899999999999999999999996543 33444
Q ss_pred ccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEE
Q 014005 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW 244 (432)
Q Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lw 244 (432)
..++.+++++-..|+.+++. |+.|+.||++ ..+.++.+ .+|-+.|.|++.+|.-+.+++| .|.++++|
T Consensus 194 -----~~vr~vavS~rHpYlFs~ge--dk~VKCwDLe---~nkvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvW 262 (460)
T KOG0285|consen 194 -----ETVRGVAVSKRHPYLFSAGE--DKQVKCWDLE---YNKVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVW 262 (460)
T ss_pred -----heeeeeeecccCceEEEecC--CCeeEEEech---hhhhHHHh-ccccceeEEEeccccceeEEecCCcceEEEe
Confidence 78899999999999999999 9999999999 77888888 8999999999999999999999 99999999
Q ss_pred eCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcccee
Q 014005 245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (432)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 324 (432)
|++ +...+..+ .+|...|.++.+.|.+ ..+++|+.|++|++||++.|+. ...+..|
T Consensus 263 DiR-tr~~V~~l-------~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt----~~tlt~h----------- 318 (460)
T KOG0285|consen 263 DIR-TRASVHVL-------SGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKT----MITLTHH----------- 318 (460)
T ss_pred eec-ccceEEEe-------cCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCce----eEeeecc-----------
Confidence 999 66667665 8999999999999998 7899999999999999999886 5777776
Q ss_pred eeecceeEEEEcCCCCEEEEeeCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceee
Q 014005 325 EIIASISDIKFANDGQHLLSRDYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLS 401 (432)
Q Consensus 325 ~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 401 (432)
...|.+++.+|.-..+|+++...|+-|++ ..++.+..|.. -+..+..++. .++++|+.+|.++
T Consensus 319 --kksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~-----------iintl~~nsD-~v~~~G~dng~~~ 384 (460)
T KOG0285|consen 319 --KKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNA-----------IINTLSVNSD-GVLVSGGDNGSIM 384 (460)
T ss_pred --cceeeEEecCCchhhhhccCCccceeccCCccchhhccccccc-----------eeeeeeeccC-ceEEEcCCceEEE
Confidence 78999999999999999988889999999 44455555442 2222222222 2578999999999
Q ss_pred eec
Q 014005 402 ALS 404 (432)
Q Consensus 402 ~~~ 404 (432)
.|+
T Consensus 385 fwd 387 (460)
T KOG0285|consen 385 FWD 387 (460)
T ss_pred EEe
Confidence 999
No 36
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=1.4e-30 Score=236.68 Aligned_cols=285 Identities=15% Similarity=0.173 Sum_probs=232.5
Q ss_pred cCCCcEEEEEE-cCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 30 QDVDIVSAIEF-DKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 30 ~h~~~V~~~~f-sp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
+..+.|..+.| .|+.++||.+++.+.+|+++..+... +.+.||+
T Consensus 321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c----------------------------~ii~GH~------- 365 (775)
T KOG0319|consen 321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC----------------------------QIIPGHT------- 365 (775)
T ss_pred CCchhheeeeecCCccceEEEEeCCCceEEEecCCCce----------------------------EEEeCch-------
Confidence 45788999987 46778999999999999998776532 3789999
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCCCccccccccccccccccccCCCCC-cce
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHG 185 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~ 185 (432)
+.|.++.. ..+|.+|+||+.|+++++|.++.+. ...+...++|. +.|.+++++..+ .++
T Consensus 366 -----e~vlSL~~--~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~-----------~svgava~~~~~asff 427 (775)
T KOG0319|consen 366 -----EAVLSLDV--WSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHT-----------NSVGAVAGSKLGASFF 427 (775)
T ss_pred -----hheeeeee--cccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccc-----------cccceeeecccCccEE
Confidence 99999994 4677899999999999999995443 22334445555 788888886553 577
Q ss_pred ecceeeccceEEEEeecccccce-eeEE----eecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecC
Q 014005 186 YHLEWTENMATKIANVGNSVHAR-CQKV----YPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (432)
Q Consensus 186 ~~~~~~~~~~v~i~d~~~~~~~~-~~~~----~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~ 259 (432)
++++. |.++++|++....... +... ....|+..|++++++|+...+|+| .|.+.++|+++ ......++
T Consensus 428 vsvS~--D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~vL--- 501 (775)
T KOG0319|consen 428 VSVSQ--DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGVL--- 501 (775)
T ss_pred EEecC--CceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-CceEEEEe---
Confidence 77777 9999999998521111 1111 125799999999999999999999 99999999999 66777766
Q ss_pred CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC
Q 014005 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (432)
Q Consensus 260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg 339 (432)
.+|...|+++.|+|.. +++|++|.|++|+||.+.+..- +++|++| ...|..+.|-.+|
T Consensus 502 ----sGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fSC----lkT~eGH-------------~~aVlra~F~~~~ 559 (775)
T KOG0319|consen 502 ----SGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFSC----LKTFEGH-------------TSAVLRASFIRNG 559 (775)
T ss_pred ----eCCccceEEEEecccc-ceeEeccCCceEEEEEecccee----eeeecCc-------------cceeEeeeeeeCC
Confidence 9999999999999998 9999999999999999998775 7999998 8999999999999
Q ss_pred CEEEEe-eCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005 340 QHLLSR-DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG 406 (432)
Q Consensus 340 ~~l~s~-~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 406 (432)
+.|+|+ +||.+++|++ .+++++..|...+|..... ...-.++||+.||.|.+|.+.
T Consensus 560 ~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~-----------~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 560 KQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVS-----------PLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred cEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeec-----------CccceeEecCCCeEEEEeecC
Confidence 999996 6699999999 8999999998766654332 112258899999999999954
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=3.5e-31 Score=221.83 Aligned_cols=262 Identities=16% Similarity=0.246 Sum_probs=222.3
Q ss_pred hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005 6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS 85 (432)
Q Consensus 6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (432)
++++.-.-|++-. ++- +...-+|++.|..++|+..|++||+++.|-.+++||.++.
T Consensus 127 s~d~tikv~D~~t--g~~-e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--------------------- 182 (406)
T KOG0295|consen 127 SEDATIKVFDTET--GEL-ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--------------------- 182 (406)
T ss_pred cCCceEEEEEccc--hhh-hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH---------------------
Confidence 3344455555442 111 3345679999999999999999999999988999998873
Q ss_pred cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccc
Q 014005 86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN 165 (432)
Q Consensus 86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 165 (432)
+++++.+.+|+ ..|.++.|. |.|.++++++.|.+|+.|++.++-+ +..+..|+
T Consensus 183 -----~~c~ks~~gh~------------h~vS~V~f~--P~gd~ilS~srD~tik~We~~tg~c--v~t~~~h~------ 235 (406)
T KOG0295|consen 183 -----FRCIKSLIGHE------------HGVSSVFFL--PLGDHILSCSRDNTIKAWECDTGYC--VKTFPGHS------ 235 (406)
T ss_pred -----HHHHHHhcCcc------------cceeeEEEE--ecCCeeeecccccceeEEeccccee--EEeccCch------
Confidence 45667888998 999999994 6789999999999999999999874 44455666
Q ss_pred ccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC---------------C
Q 014005 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---------------C 230 (432)
Q Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~ 230 (432)
..+.-++.+.++..+++++. +.++++|-+. +.+|...+ ..|...|.+++|-|. +
T Consensus 236 -----ewvr~v~v~~DGti~As~s~--dqtl~vW~~~---t~~~k~~l-R~hEh~vEci~wap~~~~~~i~~at~~~~~~ 304 (406)
T KOG0295|consen 236 -----EWVRMVRVNQDGTIIASCSN--DQTLRVWVVA---TKQCKAEL-REHEHPVECIAWAPESSYPSISEATGSTNGG 304 (406)
T ss_pred -----HhEEEEEecCCeeEEEecCC--CceEEEEEec---cchhhhhh-hccccceEEEEecccccCcchhhccCCCCCc
Confidence 68889999999999999998 9999999999 77888888 889999999999753 2
Q ss_pred CEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccccee
Q 014005 231 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 309 (432)
Q Consensus 231 ~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 309 (432)
+++.++ .|++|++||+. ++.++.++ .+|.++|+.++|+|.| ++|+++..|+++++||++.++- .+.
T Consensus 305 ~~l~s~SrDktIk~wdv~-tg~cL~tL-------~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~c----mk~ 371 (406)
T KOG0295|consen 305 QVLGSGSRDKTIKIWDVS-TGMCLFTL-------VGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQC----MKT 371 (406)
T ss_pred cEEEeecccceEEEEecc-CCeEEEEE-------ecccceeeeeEEcCCC-eEEEEEecCCcEEEEEecccee----eec
Confidence 478888 99999999999 78888876 9999999999999999 9999999999999999998764 677
Q ss_pred ecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 310 ~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
+..| ..-++++.|+.+-.|+++|+- .++++|..
T Consensus 372 ~~ah-------------~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 372 LEAH-------------EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCC-------------cceeEEEecCCCCceEEeccccceeeeeec
Confidence 8886 788999999999999999865 99999963
No 38
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=8.2e-30 Score=205.20 Aligned_cols=263 Identities=13% Similarity=0.140 Sum_probs=213.3
Q ss_pred CCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (432)
Q Consensus 25 ~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~ 104 (432)
+.....|..+++.+.|+.+|.+|++++.|.++.+|-..+++.+ .++.||+
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl---------------------------Gty~GHt--- 52 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL---------------------------GTYDGHT--- 52 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee---------------------------eeecCCC---
Confidence 3456679999999999999999999999999999998777643 7999999
Q ss_pred cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
+.|+++.. +.+.+.+++|+.|.++++||+++|+........ ..|..+.|+.++.+
T Consensus 53 ---------GavW~~Di--d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~--------------~~Vk~~~F~~~gn~ 107 (327)
T KOG0643|consen 53 ---------GAVWCCDI--DWDSKHLITGSADQTAKLWDVETGKQLATWKTN--------------SPVKRVDFSFGGNL 107 (327)
T ss_pred ---------ceEEEEEe--cCCcceeeeccccceeEEEEcCCCcEEEEeecC--------------CeeEEEeeccCCcE
Confidence 99999999 889999999999999999999999855444433 68899999999998
Q ss_pred eecceeec---cceEEEEeecccc----cceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEe
Q 014005 185 GYHLEWTE---NMATKIANVGNSV----HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV 256 (432)
Q Consensus 185 ~~~~~~~~---~~~v~i~d~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~ 256 (432)
++...... .+.|.++|++... ...+...+ ..+.+.++.+-|.|-++++++| .||.|..||.++..+.+...
T Consensus 108 ~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~ 186 (327)
T KOG0643|consen 108 ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSD 186 (327)
T ss_pred EEEEehhhcCcceEEEEEEccCChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeech
Confidence 88776533 5589999988543 44556666 6778999999999999999999 99999999999444555433
Q ss_pred ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccc-c-----cccC------------
Q 014005 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA-A-----ESHG------------ 318 (432)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h-~-----~~~~------------ 318 (432)
..|...|+.++++|+. .++++++.|.+-++||+++-+. ++++..- | ..|.
T Consensus 187 -------~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v----~Kty~te~PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 187 -------EEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEV----LKTYTTERPVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred -------hhhccccccccccCCc-ceEEecccCccceeeeccceee----EEEeeecccccceecccccceEEecCCcee
Confidence 7788899999999999 9999999999999999987543 3333210 0 0010
Q ss_pred ----------C--------------ccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 319 ----------S--------------KSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 319 ----------~--------------~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
+ -....+|.++|++++|+|+|+..++|+. |.|++.-.
T Consensus 255 ~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 255 MDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred eeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 0 0445668999999999999999999754 99998755
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.3e-30 Score=237.69 Aligned_cols=264 Identities=17% Similarity=0.285 Sum_probs=221.9
Q ss_pred CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
.+..|..++|+|...+++++-..|.|++||..-+.++ ..|..|.
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli---------------------------~rFdeHd--------- 51 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI---------------------------DRFDEHD--------- 51 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHH---------------------------hhhhccC---------
Confidence 3568999999999999999999999999999876543 6788898
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
++|..+.| +|.+.+|++|+.|-+|++|+..+.+ .+..+.+|- ..|+.+.|++.-.++.+++.
T Consensus 52 ---GpVRgv~F--H~~qplFVSGGDDykIkVWnYk~rr--clftL~GHl-----------DYVRt~~FHheyPWIlSASD 113 (1202)
T KOG0292|consen 52 ---GPVRGVDF--HPTQPLFVSGGDDYKIKVWNYKTRR--CLFTLLGHL-----------DYVRTVFFHHEYPWILSASD 113 (1202)
T ss_pred ---Cccceeee--cCCCCeEEecCCccEEEEEecccce--ehhhhcccc-----------ceeEEeeccCCCceEEEccC
Confidence 99999999 8999999999999999999998877 455566666 78999999999999999999
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceee---------------
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN--------------- 254 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~--------------- 254 (432)
|.+|+||+.. +++|+..+ .+|...|+|.+|+|....++++ -|.+|++||+. .-+...
T Consensus 114 --DQTIrIWNwq---sr~~iavl-tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDis-GLRkk~~~pg~~e~~~~~~~~ 186 (1202)
T KOG0292|consen 114 --DQTIRIWNWQ---SRKCIAVL-TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS-GLRKKNKAPGSLEDQMRGQQG 186 (1202)
T ss_pred --CCeEEEEecc---CCceEEEE-ecCceEEEeeccCCccceEEEecccceEEEEeec-chhccCCCCCCchhhhhcccc
Confidence 9999999999 88999999 8999999999999999999999 89999999985 110000
Q ss_pred ---Ee---e-cCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeee
Q 014005 255 ---IV---D-MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (432)
Q Consensus 255 ---~~---~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 327 (432)
.+ + +-...+++|...|+.++|+|.- .++++|+.|..|++|.+...+..+ +.+..+| .
T Consensus 187 ~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetKaWE--vDtcrgH-------------~ 250 (1202)
T KOG0292|consen 187 NSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWE--VDTCRGH-------------Y 250 (1202)
T ss_pred chhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEecccccee--ehhhhcc-------------c
Confidence 00 0 0011357899999999999998 899999999999999998655432 5677787 8
Q ss_pred cceeEEEEcCCCCEEEEe-eCCeEEEEec---CcceeEeecceeeeeh
Q 014005 328 ASISDIKFANDGQHLLSR-DYMNLKVFRY---EPVMTLSFCGIYVWIL 371 (432)
Q Consensus 328 ~~v~~~~~s~dg~~l~s~-~~~~i~iwd~---~~~~~~~~~~~~~~~~ 371 (432)
+.|+++-|+|...+++|. .|++|++||+ ..+++++-....-|+.
T Consensus 251 nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~l 298 (1202)
T KOG0292|consen 251 NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWIL 298 (1202)
T ss_pred CCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEE
Confidence 999999999998899985 5699999999 6778886655444443
No 40
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.1e-30 Score=219.47 Aligned_cols=286 Identities=13% Similarity=0.139 Sum_probs=227.1
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
.|+++|+-+.||++|+|||+++.|.+..||++..... .+...++.+|.
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~------------------------~kl~~tlvgh~-------- 269 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH------------------------FKLKKTLVGHS-------- 269 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc------------------------eeeeeeeeccc--------
Confidence 6899999999999999999999999999999876542 34567899999
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
.+|.-+.| +||.+++++|+.|..+.+||+.+|......... +. ..+.+++|.|++..+++|+
T Consensus 270 ----~~V~yi~w--SPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~-~~-----------~S~~sc~W~pDg~~~V~Gs 331 (519)
T KOG0293|consen 270 ----QPVSYIMW--SPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG-LG-----------FSVSSCAWCPDGFRFVTGS 331 (519)
T ss_pred ----CceEEEEE--CCCCCeEEecCchHheeeccCCcchhhhhcccC-cC-----------CCcceeEEccCCceeEecC
Confidence 99999999 999999999999999999999999865544333 22 5788999999999999999
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
. |+.+..||++... ...........|.+++.++||+++++. .|..|++++.+ +...... ..-..
T Consensus 332 ~--dr~i~~wdlDgn~----~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e-~~~dr~l--------ise~~ 396 (519)
T KOG0293|consen 332 P--DRTIIMWDLDGNI----LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNRE-ARVDRGL--------ISEEQ 396 (519)
T ss_pred C--CCcEEEecCCcch----hhcccccccceeEEEEEcCCCcEEEEEecccceeeechh-hhhhhcc--------ccccC
Confidence 9 9999999997542 222212233569999999999999988 99999999998 3333322 23345
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC-CCCEEEEeeC
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY 347 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~s~~~ 347 (432)
+|++.+.|.++ +++++.-.+..+++||+...++ ++.+.+|.. ..-+..-+|-- +..++|+|+.
T Consensus 397 ~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~l----v~kY~Ghkq-----------~~fiIrSCFgg~~~~fiaSGSE 460 (519)
T KOG0293|consen 397 PITSFSISKDG-KLALVNLQDQEIHLWDLEENKL----VRKYFGHKQ-----------GHFIIRSCFGGGNDKFIASGSE 460 (519)
T ss_pred ceeEEEEcCCC-cEEEEEcccCeeEEeecchhhH----HHHhhcccc-----------cceEEEeccCCCCcceEEecCC
Confidence 79999999999 9999999999999999997776 577777621 23455556654 4579999965
Q ss_pred -CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005 348 -MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG 406 (432)
Q Consensus 348 -~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 406 (432)
+.|+||+- +++.++.+|.. ...|..+.......+++++.||+|+||..+
T Consensus 461 D~kvyIWhr~sgkll~~LsGHs~----------~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 461 DSKVYIWHRISGKLLAVLSGHSK----------TVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CceEEEEEccCCceeEeecCCcc----------eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 99999999 89999998863 223333333344468999999999999854
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=3.9e-29 Score=209.71 Aligned_cols=284 Identities=14% Similarity=0.144 Sum_probs=221.8
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..|++.|.+++.+|+.+++|||+.|..-.||++.++... ..+.+|+
T Consensus 61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~---------------------------~eltgHK------- 106 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA---------------------------GELTGHK------- 106 (399)
T ss_pred hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce---------------------------eEecCCC-------
Confidence 479999999999999999999999999999999998643 6889999
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..|+++.| +.+|.+||||+.+|.|+||+..++..+...... -+.+.-+.|+|.+..++.|
T Consensus 107 -----DSVt~~~F--shdgtlLATGdmsG~v~v~~~stg~~~~~~~~e-------------~~dieWl~WHp~a~illAG 166 (399)
T KOG0296|consen 107 -----DSVTCCSF--SHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE-------------VEDIEWLKWHPRAHILLAG 166 (399)
T ss_pred -----CceEEEEE--ccCceEEEecCCCccEEEEEcccCceEEEeecc-------------cCceEEEEecccccEEEee
Confidence 99999999 899999999999999999999988754433211 1567888999999999999
Q ss_pred eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEee------cCCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD------MKPS 261 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~------~~~~ 261 (432)
+. ||.+-+|.+. .....+.+ .+|..++++=.|.|+|+.++++ .||+|++||.. +++++..+. ..+.
T Consensus 167 ~~--DGsvWmw~ip---~~~~~kv~-~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~k-tg~p~~~~~~~e~~~~~~~ 239 (399)
T KOG0296|consen 167 ST--DGSVWMWQIP---SQALCKVM-SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPK-TGQPLHKITQAEGLELPCI 239 (399)
T ss_pred cC--CCcEEEEECC---CcceeeEe-cCCCCCcccccccCCCceEEEEecCceEEEEecC-CCceeEEecccccCcCCcc
Confidence 99 9999999998 54666777 8999999999999999999999 99999999998 555554432 0000
Q ss_pred C--------------------------------------cCCCCcceEEEE---EcCCCCcEEEEEeCCCeEEEEEcccc
Q 014005 262 N--------------------------------------MDDLTEVITSAE---FHPIYCNLLAYSSSRGFVRLVDMRQS 300 (432)
Q Consensus 262 ~--------------------------------------~~~~~~~v~~~~---~~p~~~~~l~~~~~dg~i~iwd~~~~ 300 (432)
. ...+...+.++. ++..- .+.|+|+.||+|.|||+...
T Consensus 240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l-pL~A~G~vdG~i~iyD~a~~ 318 (399)
T KOG0296|consen 240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL-PLAACGSVDGTIAIYDLAAS 318 (399)
T ss_pred ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc-chhhcccccceEEEEecccc
Confidence 0 001122233333 33344 68899999999999999976
Q ss_pred ccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec---CcceeEeecceeeeehhhhhc
Q 014005 301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQH 376 (432)
Q Consensus 301 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~ 376 (432)
++ +..-.| ..+|..+.|-+ ..+|+++ .+|.|+.||. .++.++..|..
T Consensus 319 ~~-----R~~c~h-------------e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~---------- 369 (399)
T KOG0296|consen 319 TL-----RHICEH-------------EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQM---------- 369 (399)
T ss_pred hh-----heeccC-------------CCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCch----------
Confidence 64 555555 78899999999 5566664 6699999999 77788888864
Q ss_pred ccccccccceeeEEEEeecccceeeeec
Q 014005 377 SRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 377 ~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
.+.........-.++|+|.|+...||.
T Consensus 370 -~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 370 -GILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred -heeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 222211112223589999999999886
No 42
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.1e-29 Score=230.96 Aligned_cols=273 Identities=15% Similarity=0.191 Sum_probs=222.6
Q ss_pred cccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccccc
Q 014005 9 SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH 88 (432)
Q Consensus 9 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (432)
+++++.|+-.+.+... .-..+|++.|.+++...+|.+|+||+.|.++++|.++++...
T Consensus 343 TNs~~lr~y~~~~~~c-~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~--------------------- 400 (775)
T KOG0319|consen 343 TNSPELRLYTLPTSYC-QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK--------------------- 400 (775)
T ss_pred eCCCceEEEecCCCce-EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch---------------------
Confidence 4555555553333221 244589999999997778899999999999999999554321
Q ss_pred CCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeee-eecCCCCcccccccc
Q 014005 89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTL 167 (432)
Q Consensus 89 p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~ 167 (432)
..++....+|+ ..|.+++++ .-....|+++|.|.++++|++...+.... ..+ .++-...
T Consensus 401 --~~~~a~~~gH~------------~svgava~~-~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~-----~~~~t~~ 460 (775)
T KOG0319|consen 401 --SLCVAQANGHT------------NSVGAVAGS-KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL-----TCRYTER 460 (775)
T ss_pred --hhhhhhhcccc------------cccceeeec-ccCccEEEEecCCceEEEecCCCccccccccee-----hhhHHHH
Confidence 23456778899 999999994 23446899999999999999976321111 001 0111222
Q ss_pred ccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 014005 168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL 246 (432)
Q Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~ 246 (432)
..+..|.+++.+|+.+.+++|+. |.+.+||+++ ......++ .+|+..+.++.|+|..+.++++ .|++|+||.+
T Consensus 461 aHdKdIN~Vaia~ndkLiAT~Sq--DktaKiW~le---~~~l~~vL-sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i 534 (775)
T KOG0319|consen 461 AHDKDINCVAIAPNDKLIATGSQ--DKTAKIWDLE---QLRLLGVL-SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSI 534 (775)
T ss_pred hhcccccceEecCCCceEEeccc--ccceeeeccc---CceEEEEe-eCCccceEEEEeccccceeEeccCCceEEEEEe
Confidence 34588999999999999999999 9999999999 77888888 8999999999999999999999 9999999999
Q ss_pred CCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeee
Q 014005 247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 326 (432)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 326 (432)
. +..|++++ .+|...|..+.|-.++ ..|++|+.||.|++|++.++. | .+++..|
T Consensus 535 s-~fSClkT~-------eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt~e-C---~~tlD~H------------- 588 (775)
T KOG0319|consen 535 S-TFSCLKTF-------EGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNE-C---EMTLDAH------------- 588 (775)
T ss_pred c-cceeeeee-------cCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchh-h---hhhhhhc-------------
Confidence 9 88999987 9999999999999999 999999999999999999876 4 6899998
Q ss_pred ecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005 327 IASISDIKFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 327 ~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
...|++++.+|++.++++| +||.|.+|.=
T Consensus 589 ~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 589 NDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred cceeEEEeecCccceeEecCCCeEEEEeec
Confidence 8999999999999999986 6699999954
No 43
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3.5e-29 Score=234.97 Aligned_cols=243 Identities=17% Similarity=0.301 Sum_probs=204.8
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
.+|...|++++|+|+|+++++|+.|++|+|||+... ...++++.+|.
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~--------------------------~~~~~~l~gH~------- 246 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD--------------------------GRNLKTLKGHS------- 246 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCC--------------------------CeEEEEecCCC-------
Confidence 579999999999999999999999999999999432 23568899999
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..|++++| +|+++++++|+.|++|++||++++++. ..+..|. +.|..++|++++.+++++
T Consensus 247 -----~~v~~~~f--~p~g~~i~Sgs~D~tvriWd~~~~~~~--~~l~~hs-----------~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 247 -----TYVTSVAF--SPDGNLLVSGSDDGTVRIWDVRTGECV--RKLKGHS-----------DGISGLAFSPDGNLLVSA 306 (456)
T ss_pred -----CceEEEEe--cCCCCEEEEecCCCcEEEEeccCCeEE--EeeeccC-----------CceEEEEECCCCCEEEEc
Confidence 99999999 899999999999999999999997743 3444555 789999999999999999
Q ss_pred eeeccceEEEEeecccccce--eeEEeecCCCC--CeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005 189 EWTENMATKIANVGNSVHAR--CQKVYPHAHDF--NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~--~~~~~~~~~~~--~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (432)
+. |+.+++||+. .+. +...+ .++.. .+++++|+|++.+++++ .|+.+++||++ ...+...+
T Consensus 307 s~--d~~i~vwd~~---~~~~~~~~~~-~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~-~~~~~~~~------- 372 (456)
T KOG0266|consen 307 SY--DGTIRVWDLE---TGSKLCLKLL-SGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR-SGKSVGTY------- 372 (456)
T ss_pred CC--CccEEEEECC---CCceeeeecc-cCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc-CCcceeee-------
Confidence 88 9999999999 445 55666 44444 49999999999999999 99999999999 66666665
Q ss_pred CCCCc---ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC
Q 014005 264 DDLTE---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (432)
Q Consensus 264 ~~~~~---~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~ 340 (432)
.+|.. .+.+...++.+ .++++|+.|+.|++||+.++.. +..+.+|. ...+..+.++|...
T Consensus 373 ~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~~----~~~l~~h~------------~~~~~~~~~~~~~~ 435 (456)
T KOG0266|consen 373 TGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGGI----LQRLEGHS------------KAAVSDLSSHPTEN 435 (456)
T ss_pred cccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccch----hhhhcCCC------------CCceeccccCCCcC
Confidence 55555 34455567787 9999999999999999998765 57777751 46889999999999
Q ss_pred EEEEee---CCeEEEEec
Q 014005 341 HLLSRD---YMNLKVFRY 355 (432)
Q Consensus 341 ~l~s~~---~~~i~iwd~ 355 (432)
++++++ |+.+++|..
T Consensus 436 ~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 436 LIASSSFEGDGLIRLWKY 453 (456)
T ss_pred eeeecCcCCCceEEEecC
Confidence 999954 599999965
No 44
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3e-30 Score=213.24 Aligned_cols=291 Identities=14% Similarity=0.215 Sum_probs=226.3
Q ss_pred CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
....+-|..|||||+||++|+.||-|.+|+..+++.-+ .+ .|.....|.-+.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrK-------DL------------kYQAqd~fMMmd--------- 263 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRK-------DL------------KYQAQDNFMMMD--------- 263 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhh-------hh------------hhhhhcceeecc---------
Confidence 35678899999999999999999999999999887431 11 011112233344
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
..|.|+.| +.|..++++|+.||.|++|.+++|.+.+.... .|. ..|.++.|+.++..+.++++
T Consensus 264 ---~aVlci~F--SRDsEMlAsGsqDGkIKvWri~tG~ClRrFdr-AHt-----------kGvt~l~FSrD~SqiLS~sf 326 (508)
T KOG0275|consen 264 ---DAVLCISF--SRDSEMLASGSQDGKIKVWRIETGQCLRRFDR-AHT-----------KGVTCLSFSRDNSQILSASF 326 (508)
T ss_pred ---cceEEEee--cccHHHhhccCcCCcEEEEEEecchHHHHhhh-hhc-----------cCeeEEEEccCcchhhcccc
Confidence 89999999 89999999999999999999999985433221 223 68999999999999999999
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
|.++++.-+. .+++++.+ .+|.+.|+...|.++|..++++ .||+|++|+.. +..|+.++.. .+...+
T Consensus 327 --D~tvRiHGlK---SGK~LKEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K-tteC~~Tfk~-----~~~d~~ 394 (508)
T KOG0275|consen 327 --DQTVRIHGLK---SGKCLKEF-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK-TTECLSTFKP-----LGTDYP 394 (508)
T ss_pred --cceEEEeccc---cchhHHHh-cCccccccceEEcCCCCeEEEecCCccEEEecCc-chhhhhhccC-----CCCccc
Confidence 9999999998 89999999 9999999999999999999999 99999999999 7888888722 345567
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-eeCC
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYM 348 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~~ 348 (432)
|+++..-|.++..+++|...++|.|.++. |+. ++.|..- . .. .+...+.+.||.|.++.+ |.|+
T Consensus 395 vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQv----VrsfsSG-k-RE--------gGdFi~~~lSpkGewiYcigED~ 459 (508)
T KOG0275|consen 395 VNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQV----VRSFSSG-K-RE--------GGDFINAILSPKGEWIYCIGEDG 459 (508)
T ss_pred ceeEEEcCCCCceEEEEcCCCeEEEEecc-ceE----EeeeccC-C-cc--------CCceEEEEecCCCcEEEEEccCc
Confidence 99999999888899999999999999987 554 4666541 0 00 245567788999999988 5779
Q ss_pred eEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 349 NLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 349 ~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
.++.|.+ +...++.+|+..+.-. .-..-.-++++=+.||.+++|.
T Consensus 460 vlYCF~~~sG~LE~tl~VhEkdvIGl-----------~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 460 VLYCFSVLSGKLERTLPVHEKDVIGL-----------THHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEEEeecCceeeeeeccccccccc-----------ccCcccchhhhhcccchhhhcC
Confidence 9999999 6667777776411100 0011111355556778888774
No 45
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.2e-29 Score=212.15 Aligned_cols=291 Identities=18% Similarity=0.223 Sum_probs=223.2
Q ss_pred CCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCC
Q 014005 22 ERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE 101 (432)
Q Consensus 22 ~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~ 101 (432)
.......+.|.+.|.++... ++++++|++||.+++||..+. ...++.||.
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk----------------------------~~~~~~Ght 144 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK----------------------------SIKTIVGHT 144 (423)
T ss_pred CCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc----------------------------eEEEEecCC
Confidence 33445567899999999987 789999999999999998765 346889999
Q ss_pred ccccccchhhhhcceeEEEEEE-cCCCCEEEEEeCCCeEEEEEccCccee--eeeecCCCCccccccccccccccccccC
Q 014005 102 PEFDYLKSLEIEEKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQKVK--KIKEMDHFPFVSSENTLLAEKNFMNEHN 178 (432)
Q Consensus 102 ~~~~~~~~~~~~~~v~~l~~~~-s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 178 (432)
++|.+++|.. ++....|++++.|.++++|..+.+... ....-.+|. ..|.++..
T Consensus 145 ------------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk-----------~~V~sVsv 201 (423)
T KOG0313|consen 145 ------------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK-----------RSVDSVSV 201 (423)
T ss_pred ------------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc-----------cceeEEEe
Confidence 9999888853 222346999999999999999876532 222223555 78999999
Q ss_pred CCCCcceecceeeccceEEEEeeccc----------------------ccceeeEEeecCCCCCeeEEEeCCCCCEEEEE
Q 014005 179 PPSFAHGYHLEWTENMATKIANVGNS----------------------VHARCQKVYPHAHDFNINSISNNSDCETFVSA 236 (432)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~i~d~~~~----------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 236 (432)
.+++..+.+|+. |..+++|+.... ..+.++-++ .+|...|.++.|++. ..+.++
T Consensus 202 ~~sgtr~~SgS~--D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl-~GHt~~Vs~V~w~d~-~v~yS~ 277 (423)
T KOG0313|consen 202 DSSGTRFCSGSW--DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL-EGHTEPVSSVVWSDA-TVIYSV 277 (423)
T ss_pred cCCCCeEEeecc--cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe-cccccceeeEEEcCC-CceEee
Confidence 999999999999 999999993211 122345556 799999999999984 456666
Q ss_pred -cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccc
Q 014005 237 -DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE 315 (432)
Q Consensus 237 -~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~ 315 (432)
.|.+|+.||+. .+.....+ .-...++++..+|.. ++|++|+.|..+++||.|++.- .-....|.+|
T Consensus 278 SwDHTIk~WDle-tg~~~~~~--------~~~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~g-s~v~~s~~gH-- 344 (423)
T KOG0313|consen 278 SWDHTIKVWDLE-TGGLKSTL--------TTNKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDG-SVVSQSLIGH-- 344 (423)
T ss_pred cccceEEEEEee-cccceeee--------ecCcceeEeeccccc-ceeeecCCCCceeecCCCCCCC-ceeEEeeecc--
Confidence 99999999999 45544432 234568999999987 9999999999999999997642 1124667776
Q ss_pred ccCCccceeeeecceeEEEEcCCCCEE-EEeeC-CeEEEEec----CcceeEeecceeeeehhhhhcccccccccceeeE
Q 014005 316 SHGSKSFFTEIIASISDIKFANDGQHL-LSRDY-MNLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVI 389 (432)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~s~dg~~l-~s~~~-~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (432)
.++|.++.|+|...++ ++|+. +++++||+ .++..+..|.. .-++..+ ....
T Consensus 345 -----------~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D----------Kvl~vdW--~~~~ 401 (423)
T KOG0313|consen 345 -----------KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND----------KVLSVDW--NEGG 401 (423)
T ss_pred -----------hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc----------eEEEEec--cCCc
Confidence 8999999999987665 55655 99999999 48888888754 1222222 1234
Q ss_pred EEEeecccceeeeecc
Q 014005 390 YIITTLYLINLSALSA 405 (432)
Q Consensus 390 ~~~~g~~~~~i~~~~~ 405 (432)
+|++|+.|+++.|+..
T Consensus 402 ~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 402 LIVSGGADNKLRIFKG 417 (423)
T ss_pred eEEeccCcceEEEecc
Confidence 6999999999999984
No 46
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=4.2e-29 Score=204.39 Aligned_cols=263 Identities=14% Similarity=0.154 Sum_probs=214.3
Q ss_pred cchhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccc
Q 014005 3 LNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMD 82 (432)
Q Consensus 3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 82 (432)
.++..+.+...|...+... .-...-.|+++|+.+.|.+++..|++++.|.+++.||.++++..
T Consensus 63 aSgG~Dr~I~LWnv~gdce--N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~--------------- 125 (338)
T KOG0265|consen 63 ASGGSDRAIVLWNVYGDCE--NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRI--------------- 125 (338)
T ss_pred eecCCcceEEEEecccccc--ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceee---------------
Confidence 4557778888998654322 23334489999999999999999999999999999999998744
Q ss_pred ccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcc
Q 014005 83 FTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFV 161 (432)
Q Consensus 83 ~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 161 (432)
..+++|. .-|+.+.- ..- -.++.+++.|+++++||++.+...+....
T Consensus 126 ------------rk~k~h~------------~~vNs~~p--~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~------ 173 (338)
T KOG0265|consen 126 ------------RKHKGHT------------SFVNSLDP--SRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN------ 173 (338)
T ss_pred ------------ehhcccc------------ceeeecCc--cccCCeEEEecCCCceEEEEeecccchhhcccc------
Confidence 6788898 77888774 433 45677889999999999997764433221
Q ss_pred ccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe
Q 014005 162 SSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR 240 (432)
Q Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~ 240 (432)
...+.++.|..++..+.+|+. |+.|++||++ ...+..++ .+|.+.|+.+..+|+|.++.+- .|.+
T Consensus 174 --------kyqltAv~f~d~s~qv~sggI--dn~ikvWd~r---~~d~~~~l-sGh~DtIt~lsls~~gs~llsnsMd~t 239 (338)
T KOG0265|consen 174 --------KYQLTAVGFKDTSDQVISGGI--DNDIKVWDLR---KNDGLYTL-SGHADTITGLSLSRYGSFLLSNSMDNT 239 (338)
T ss_pred --------ceeEEEEEecccccceeeccc--cCceeeeccc---cCcceEEe-ecccCceeeEEeccCCCccccccccce
Confidence 256888999999999999999 9999999998 77788888 8999999999999999999998 9999
Q ss_pred EEEEeCCC---CCceeeEeecCCCCcCCCC----cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccc
Q 014005 241 INLWNLEI---SDQCFNIVDMKPSNMDDLT----EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA 313 (432)
Q Consensus 241 i~lwd~~~---~~~~~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h 313 (432)
+++||++- ..+++.++ .+|. .....++|+|++ ..+.+|+.|..+++||..+... +..+.+|
T Consensus 240 vrvwd~rp~~p~~R~v~if-------~g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~r~~----lyklpGh 307 (338)
T KOG0265|consen 240 VRVWDVRPFAPSQRCVKIF-------QGHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTSRRI----LYKLPGH 307 (338)
T ss_pred EEEEEecccCCCCceEEEe-------ecchhhhhhhcceeeccCCC-CccccccccceEEEeecccccE----EEEcCCc
Confidence 99999972 12346665 3332 234577899999 9999999999999999887665 6888887
Q ss_pred ccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEE
Q 014005 314 AESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVF 353 (432)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iw 353 (432)
.+.|..++|+|...+|.++ +|.+|++=
T Consensus 308 -------------~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 308 -------------YGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred -------------ceeEEEeeecCCCcEEEEeccCceeEee
Confidence 8999999999999999986 66888763
No 47
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=3.2e-28 Score=213.31 Aligned_cols=286 Identities=10% Similarity=0.116 Sum_probs=210.4
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchh-------hhcccccc-ccccC--------Cc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSE-------LEKQMDFT-STSHP--------EY 91 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~p--------~~ 91 (432)
...|++.|.+++|+||++.++|++.|.+++|||+.+.++.+...-.... +=+.+..+ ++..+ ..
T Consensus 231 ~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 231 SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCC
Confidence 4579999999999999999999999999999999988765432222111 11122222 22222 23
Q ss_pred ceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeee---------ecCCCC--c
Q 014005 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK---------EMDHFP--F 160 (432)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------~~~~~~--~ 160 (432)
.....+.||. +.|+++.. ++++.+|++|+.||.|.-|+..++..-++. .+.... +
T Consensus 311 ~~~~~i~GHn------------K~ITaLtv--~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~ 376 (603)
T KOG0318|consen 311 SVLKVISGHN------------KSITALTV--SPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE 376 (603)
T ss_pred Chhheecccc------------cceeEEEE--cCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCc
Confidence 4677889999 99999999 899999999999999999998765432221 000000 0
Q ss_pred cc---------------------------------------------------------cccccccccccccccCCCCCc
Q 014005 161 VS---------------------------------------------------------SENTLLAEKNFMNEHNPPSFA 183 (432)
Q Consensus 161 ~~---------------------------------------------------------~~~~~~~~~~i~~~~~~~~~~ 183 (432)
+. .+......-...+++.+|++.
T Consensus 377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~ 456 (603)
T KOG0318|consen 377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS 456 (603)
T ss_pred EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC
Confidence 00 000001123344677788888
Q ss_pred ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC
Q 014005 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (432)
Q Consensus 184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~ 262 (432)
.++.|+. |+.+++|.+..... ...... ..|.+.|++++++||+.+||++ ..+.+.+||+. ..+. + ...
T Consensus 457 ~vaVGG~--Dgkvhvysl~g~~l-~ee~~~-~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~-s~~~-~-----~~~ 525 (603)
T KOG0318|consen 457 EVAVGGQ--DGKVHVYSLSGDEL-KEEAKL-LEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVA-SREV-K-----TNR 525 (603)
T ss_pred EEEEecc--cceEEEEEecCCcc-cceeee-ecccCCceEEEECCCCcEEEEeccCCcEEEEEcc-cCce-e-----cce
Confidence 9999988 99999999986432 222223 5899999999999999999999 89999999999 4433 2 123
Q ss_pred cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (432)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 342 (432)
+.-|++.|.+++|+|++ .++|+|+.|-.|.||++..... .+.....| ...|+.+.|-.+...+
T Consensus 526 w~FHtakI~~~aWsP~n-~~vATGSlDt~Viiysv~kP~~---~i~iknAH-------------~~gVn~v~wlde~tvv 588 (603)
T KOG0318|consen 526 WAFHTAKINCVAWSPNN-KLVATGSLDTNVIIYSVKKPAK---HIIIKNAH-------------LGGVNSVAWLDESTVV 588 (603)
T ss_pred eeeeeeeEEEEEeCCCc-eEEEeccccceEEEEEccChhh---heEecccc-------------ccCceeEEEecCceEE
Confidence 46799999999999998 9999999999999999985332 24455555 5679999999888777
Q ss_pred EEeeCCeEEEEec
Q 014005 343 LSRDYMNLKVFRY 355 (432)
Q Consensus 343 ~s~~~~~i~iwd~ 355 (432)
-+|.|..|++|++
T Consensus 589 SsG~Da~iK~W~v 601 (603)
T KOG0318|consen 589 SSGQDANIKVWNV 601 (603)
T ss_pred eccCcceeEEecc
Confidence 7788899999986
No 48
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=9.5e-30 Score=213.14 Aligned_cols=290 Identities=18% Similarity=0.204 Sum_probs=222.3
Q ss_pred hhhhhhcCCCCCccccCCCcEEEEEEcCCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcce
Q 014005 15 KCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRY 93 (432)
Q Consensus 15 ~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 93 (432)
|+-..|.......+-+|.+.|.|++=+|.. ..+|+|+.||.|+|||+.... +
T Consensus 49 KleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~---------------------------~ 101 (433)
T KOG0268|consen 49 KLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE---------------------------C 101 (433)
T ss_pred HHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh---------------------------h
Confidence 555677777777788999999999999977 679999999999999998865 3
Q ss_pred eeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccc
Q 014005 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (432)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 173 (432)
..+++.|. +.|..|++ +. ..+++++.|++|+.|.+....... ...++.+
T Consensus 102 ~~~f~AH~------------G~V~Gi~v--~~--~~~~tvgdDKtvK~wk~~~~p~~t---------------ilg~s~~ 150 (433)
T KOG0268|consen 102 IRTFKAHE------------GLVRGICV--TQ--TSFFTVGDDKTVKQWKIDGPPLHT---------------ILGKSVY 150 (433)
T ss_pred hheeeccc------------CceeeEEe--cc--cceEEecCCcceeeeeccCCccee---------------eeccccc
Confidence 47899999 99999999 43 678999999999999988642211 1223556
Q ss_pred ccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCc
Q 014005 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQ 251 (432)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~ 251 (432)
..+.-+......++++. .|.|||.+ ...+++.+ ....+.|.++.|+|... .|+++ .|+.|.+||++ ...
T Consensus 151 ~gIdh~~~~~~FaTcGe----~i~IWD~~---R~~Pv~sm-swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R-~~~ 221 (433)
T KOG0268|consen 151 LGIDHHRKNSVFATCGE----QIDIWDEQ---RDNPVSSM-SWGADSISSVKFNPVETSILASCASDRSIVLYDLR-QAS 221 (433)
T ss_pred cccccccccccccccCc----eeeecccc---cCCcccee-ecCCCceeEEecCCCcchheeeeccCCceEEEecc-cCC
Confidence 66666666666666543 78999998 66788888 66777899999999755 45566 99999999999 566
Q ss_pred eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeeccee
Q 014005 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (432)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~ 331 (432)
+++.+- ..-.-+.++|+|.+ -.|.+|++|..++.||++.-+.. +....+| .+.|.
T Consensus 222 Pl~KVi--------~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p---~~v~~dh-------------vsAV~ 276 (433)
T KOG0268|consen 222 PLKKVI--------LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRP---LNVHKDH-------------VSAVM 276 (433)
T ss_pred ccceee--------eeccccceecCccc-cceeeccccccceehhhhhhccc---chhhccc-------------ceeEE
Confidence 655431 12234679999976 88999999999999999975443 6777776 88999
Q ss_pred EEEEcCCCCEEEEeeC-CeEEEEec--CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 332 DIKFANDGQHLLSRDY-MNLKVFRY--EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 332 ~~~~s~dg~~l~s~~~-~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
+++|||.|+-+++|+. .+|+||.+ ..-+.+. ....+ +..+|..|..+. .||++||+|++|.+|..
T Consensus 277 dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY-------htkRM-q~V~~Vk~S~Ds-kyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 277 DVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY-------HTKRM-QHVFCVKYSMDS-KYIISGSDDGNVRLWKA 344 (433)
T ss_pred EeccCCCcchhccccccceEEEeecCCCcchhhh-------hHhhh-heeeEEEEeccc-cEEEecCCCcceeeeec
Confidence 9999999999999976 99999998 1111111 11112 345565554443 46999999999999994
No 49
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-28 Score=197.25 Aligned_cols=239 Identities=15% Similarity=0.207 Sum_probs=188.2
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC-cceecceeec
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGYHLEWTE 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~ 192 (432)
+.+..++|+++ ..+.+++++.||++++||+... ...+..++.|. ..|.++.|++.. ..+++++.
T Consensus 61 D~LfdV~Wse~-~e~~~~~a~GDGSLrl~d~~~~-s~Pi~~~kEH~-----------~EV~Svdwn~~~r~~~ltsSW-- 125 (311)
T KOG0277|consen 61 DGLFDVAWSEN-HENQVIAASGDGSLRLFDLTMP-SKPIHKFKEHK-----------REVYSVDWNTVRRRIFLTSSW-- 125 (311)
T ss_pred cceeEeeecCC-CcceEEEEecCceEEEeccCCC-CcchhHHHhhh-----------hheEEeccccccceeEEeecc--
Confidence 78999999643 3457888899999999995432 33455555555 788999998764 45556677
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (432)
|++|++|+.. ..+.++++ .+|...|...+|+|. .+.++++ .|+.+++||++..++.+. + +.|...|
T Consensus 126 D~TiKLW~~~---r~~Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i-------~ah~~Ei 193 (311)
T KOG0277|consen 126 DGTIKLWDPN---RPNSVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-I-------EAHNSEI 193 (311)
T ss_pred CCceEeecCC---CCcceEee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-E-------Eecccee
Confidence 9999999998 77888889 899999999999996 5667777 999999999997776655 3 7899999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC-CEEEEeeC-C
Q 014005 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-M 348 (432)
Q Consensus 271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~s~~~-~ 348 (432)
.++.|+..+.++|++|+.|+.|+.||+|.-+.. +..+.+| .-.|..++|||.. ..||++++ -
T Consensus 194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p---l~eL~gh-------------~~AVRkvk~Sph~~~lLaSasYDm 257 (311)
T KOG0277|consen 194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP---LFELNGH-------------GLAVRKVKFSPHHASLLASASYDM 257 (311)
T ss_pred EeecccccCCcEEEecCCCceEEEEehhhcccc---ceeecCC-------------ceEEEEEecCcchhhHhhhccccc
Confidence 999999877799999999999999999986653 6777887 7899999999974 57788877 9
Q ss_pred eEEEEec----CcceeEeecceeeeehhhhhccccccccc-ceeeEEEEeecccceeeeeccC
Q 014005 349 NLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMSIYA-LSCVIYIITTLYLINLSALSAG 406 (432)
Q Consensus 349 ~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~i~~~~~~ 406 (432)
+++|||. ..+.++..|.. -.|.+-. .-...++++.+.|..++||+.+
T Consensus 258 T~riw~~~~~ds~~e~~~~HtE-----------Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p~ 309 (311)
T KOG0277|consen 258 TVRIWDPERQDSAIETVDHHTE-----------FVCGLDWSLFDPGQVASTGWDELLYVWNPG 309 (311)
T ss_pred eEEecccccchhhhhhhhccce-----------EEeccccccccCceeeecccccceeeeccc
Confidence 9999999 45556665554 1222111 1134478999999999999854
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.7e-28 Score=225.82 Aligned_cols=267 Identities=14% Similarity=0.216 Sum_probs=217.4
Q ss_pred hhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc
Q 014005 5 REEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT 84 (432)
Q Consensus 5 ~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (432)
+-.+.-.-.|++.=..- ..+-..|.++|..+.|+|++.++++|+.|..|++|+..+.+
T Consensus 27 slHsG~IQlWDYRM~tl---i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr------------------- 84 (1202)
T KOG0292|consen 27 SLHSGVIQLWDYRMGTL---IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR------------------- 84 (1202)
T ss_pred eecCceeeeehhhhhhH---HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce-------------------
Confidence 33344455677662211 12234789999999999999999999999999999998866
Q ss_pred ccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccc
Q 014005 85 STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE 164 (432)
Q Consensus 85 ~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 164 (432)
++.++.||- +.|..+.| ++.-.+++++|.|.+|+||+..++++..+ +.+|.
T Consensus 85 --------clftL~GHl------------DYVRt~~F--HheyPWIlSASDDQTIrIWNwqsr~~iav--ltGHn----- 135 (1202)
T KOG0292|consen 85 --------CLFTLLGHL------------DYVRTVFF--HHEYPWILSASDDQTIRIWNWQSRKCIAV--LTGHN----- 135 (1202)
T ss_pred --------ehhhhcccc------------ceeEEeec--cCCCceEEEccCCCeEEEEeccCCceEEE--EecCc-----
Confidence 557899999 89999999 88999999999999999999999885443 44444
Q ss_pred cccccccccccccCCCCCcceecceeeccceEEEEeecccc--------------------------cceeeEEeecCCC
Q 014005 165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV--------------------------HARCQKVYPHAHD 218 (432)
Q Consensus 165 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~--------------------------~~~~~~~~~~~~~ 218 (432)
..|.+.+|+|....+++++. |.+|++||+..-. .......+ .+|+
T Consensus 136 ------HYVMcAqFhptEDlIVSaSL--DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL-EGHD 206 (1202)
T KOG0292|consen 136 ------HYVMCAQFHPTEDLIVSASL--DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL-EGHD 206 (1202)
T ss_pred ------eEEEeeccCCccceEEEecc--cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee-cccc
Confidence 67999999999999999999 9999999975311 01122334 7999
Q ss_pred CCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (432)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~ 297 (432)
..|+.++|+|.-..+++| +|..|++|.+. ..+..+. .+..+|.+.|.++-|+|.. .++++.+.|++|++||+
T Consensus 207 RGVNwaAfhpTlpliVSG~DDRqVKlWrmn-etKaWEv-----DtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 207 RGVNWAAFHPTLPLIVSGADDRQVKLWRMN-ETKAWEV-----DTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDM 279 (1202)
T ss_pred cccceEEecCCcceEEecCCcceeeEEEec-cccceee-----hhhhcccCCcceEEecCcc-ceeEecCCCccEEEEec
Confidence 999999999999999999 99999999998 3332221 2458999999999999998 99999999999999999
Q ss_pred cccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 298 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
.+.+. +++|+.- ...-+.++-+|...++|+|-|+-+.+|.+
T Consensus 280 ~kRt~----v~tfrre-------------ndRFW~laahP~lNLfAAgHDsGm~VFkl 320 (1202)
T KOG0292|consen 280 TKRTS----VQTFRRE-------------NDRFWILAAHPELNLFAAGHDSGMIVFKL 320 (1202)
T ss_pred ccccc----eeeeecc-------------CCeEEEEEecCCcceeeeecCCceEEEEE
Confidence 98765 5777541 36778899999999999998877888888
No 51
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=6.1e-28 Score=202.57 Aligned_cols=254 Identities=19% Similarity=0.245 Sum_probs=196.6
Q ss_pred cchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCC
Q 014005 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE 90 (432)
Q Consensus 11 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 90 (432)
-..|+.++ ++ ...+...|++.|+|+.|+.+|.+||||+.+|.|+||+..++...
T Consensus 88 AflW~~~~--ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~----------------------- 141 (399)
T KOG0296|consen 88 AFLWDIST--GE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ----------------------- 141 (399)
T ss_pred EEEEEccC--Cc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE-----------------------
Confidence 34676665 44 56777899999999999999999999999999999999987632
Q ss_pred cceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCCcccccccccc
Q 014005 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLA 169 (432)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~ 169 (432)
..+..-- ..+.=+.| +|.+..|+.|+.||.+-.|.+..+. ++. +.+|.
T Consensus 142 ----~~~~~e~------------~dieWl~W--Hp~a~illAG~~DGsvWmw~ip~~~~~kv---~~Gh~---------- 190 (399)
T KOG0296|consen 142 ----WKLDQEV------------EDIEWLKW--HPRAHILLAGSTDGSVWMWQIPSQALCKV---MSGHN---------- 190 (399)
T ss_pred ----EEeeccc------------CceEEEEe--cccccEEEeecCCCcEEEEECCCcceeeE---ecCCC----------
Confidence 2232222 45666788 8899999999999999999998753 333 33344
Q ss_pred ccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecC---------------------------------
Q 014005 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHA--------------------------------- 216 (432)
Q Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~--------------------------------- 216 (432)
.++.+=.|.|+|+.+.++.. ||+|++|++. +++++..+...
T Consensus 191 -~~ct~G~f~pdGKr~~tgy~--dgti~~Wn~k---tg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 191 -SPCTCGEFIPDGKRILTGYD--DGTIIVWNPK---TGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS 264 (399)
T ss_pred -CCcccccccCCCceEEEEec--CceEEEEecC---CCceeEEecccccCcCCccccccccceeEeccCCccEEEEcccc
Confidence 77888899999999999999 9999999998 55554444210
Q ss_pred -----------------CCCCeeE---EEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEE
Q 014005 217 -----------------HDFNINS---ISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 275 (432)
Q Consensus 217 -----------------~~~~i~~---~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 275 (432)
+...+.+ +.++..=++.|+| -||+|.|||+. ...++.. -.|...|..+.|
T Consensus 265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a--~~~~R~~-------c~he~~V~~l~w 335 (399)
T KOG0296|consen 265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLA--ASTLRHI-------CEHEDGVTKLKW 335 (399)
T ss_pred ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecc--cchhhee-------ccCCCceEEEEE
Confidence 0111111 2222223366778 89999999998 2333322 578888999999
Q ss_pred cCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEe
Q 014005 276 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFR 354 (432)
Q Consensus 276 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd 354 (432)
-+ . .+|++++.+|.|++||.|+|++ +..+.+| ...|.+++.+|++++++++++ ++.++|+
T Consensus 336 ~~-t-~~l~t~c~~g~v~~wDaRtG~l----~~~y~GH-------------~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 336 LN-T-DYLLTACANGKVRQWDARTGQL----KFTYTGH-------------QMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred cC-c-chheeeccCceEEeeeccccce----EEEEecC-------------chheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 99 4 7899999999999999999997 6888997 899999999999999999755 9999997
Q ss_pred c
Q 014005 355 Y 355 (432)
Q Consensus 355 ~ 355 (432)
+
T Consensus 397 v 397 (399)
T KOG0296|consen 397 V 397 (399)
T ss_pred c
Confidence 6
No 52
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.7e-28 Score=219.16 Aligned_cols=237 Identities=17% Similarity=0.203 Sum_probs=206.9
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
.+|-++.+ +|...+++.+-..|.|.||+.++..+.+..... +-+|+...|-....++++|+. |
T Consensus 14 dRVKsVd~--HPtePw~la~LynG~V~IWnyetqtmVksfeV~-------------~~PvRa~kfiaRknWiv~GsD--D 76 (794)
T KOG0276|consen 14 DRVKSVDF--HPTEPWILAALYNGDVQIWNYETQTMVKSFEVS-------------EVPVRAAKFIARKNWIVTGSD--D 76 (794)
T ss_pred Cceeeeec--CCCCceEEEeeecCeeEEEecccceeeeeeeec-------------ccchhhheeeeccceEEEecC--C
Confidence 89999999 889999999999999999999988754443332 267999999999999999999 9
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (432)
..|++|+.+ +...++.| ..|.+.|++++.+|..++++++ +|-+|++||.+..-.+.+++ ++|...|++
T Consensus 77 ~~IrVfnyn---t~ekV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf-------eGH~HyVMq 145 (794)
T KOG0276|consen 77 MQIRVFNYN---TGEKVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF-------EGHEHYVMQ 145 (794)
T ss_pred ceEEEEecc---cceeeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE-------cCcceEEEE
Confidence 999999999 88889999 8999999999999999999999 99999999999666677776 999999999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC--CEEEEeeC-Ce
Q 014005 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDY-MN 349 (432)
Q Consensus 273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg--~~l~s~~~-~~ 349 (432)
++|+|..++.||+++-|++|++|.+.+... ..++++| ...|+++.+-+.| .||++|+| .+
T Consensus 146 v~fnPkD~ntFaS~sLDrTVKVWslgs~~~----nfTl~gH-------------ekGVN~Vdyy~~gdkpylIsgaDD~t 208 (794)
T KOG0276|consen 146 VAFNPKDPNTFASASLDRTVKVWSLGSPHP----NFTLEGH-------------EKGVNCVDYYTGGDKPYLISGADDLT 208 (794)
T ss_pred EEecCCCccceeeeeccccEEEEEcCCCCC----ceeeecc-------------ccCcceEEeccCCCcceEEecCCCce
Confidence 999998889999999999999999987665 6888997 8999999998855 69999855 99
Q ss_pred EEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005 350 LKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG 406 (432)
Q Consensus 350 i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 406 (432)
++|||. .+++++..|.. .+...++......+++|+-||++++|..+
T Consensus 209 iKvWDyQtk~CV~TLeGHt~-----------Nvs~v~fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 209 IKVWDYQTKSCVQTLEGHTN-----------NVSFVFFHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred EEEeecchHHHHHHhhcccc-----------cceEEEecCCCcEEEEecCCccEEEecCc
Confidence 999999 89999998864 33444455555569999999999999943
No 53
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.3e-27 Score=241.00 Aligned_cols=277 Identities=15% Similarity=0.154 Sum_probs=203.6
Q ss_pred hhccccchhhhhhhhcC----CCCCccccCCCcEEEEEEcCC-CCEEEEecccceEEEEEecCCcCCCCccccchhhhcc
Q 014005 6 EEASASLEWKCSQAFGE----RNPDEELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQ 80 (432)
Q Consensus 6 ~~~~~~~~w~~~~~~~~----~~~~~~~~h~~~V~~~~fsp~-g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 80 (432)
..+.....|.+.....+ ......+.+...|.+++|+|. +.+||+++.||+|+|||+.+++.
T Consensus 502 g~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~-------------- 567 (793)
T PLN00181 502 GVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL-------------- 567 (793)
T ss_pred eCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE--------------
Confidence 44455677876532211 111223445678999999874 78999999999999999987653
Q ss_pred ccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCC
Q 014005 81 MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP 159 (432)
Q Consensus 81 ~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 159 (432)
+..+.+|. +.|++++| +| ++.+|++|+.|++|++||+.++........ +
T Consensus 568 -------------~~~~~~H~------------~~V~~l~~--~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~--~- 617 (793)
T PLN00181 568 -------------VTEMKEHE------------KRVWSIDY--SSADPTLLASGSDDGSVKLWSINQGVSIGTIKT--K- 617 (793)
T ss_pred -------------EEEecCCC------------CCEEEEEE--cCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec--C-
Confidence 36788999 99999999 64 788999999999999999987764332221 1
Q ss_pred ccccccccccccccccccCC-CCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c
Q 014005 160 FVSSENTLLAEKNFMNEHNP-PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D 237 (432)
Q Consensus 160 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~ 237 (432)
..+.++.|. +++..+++|+. |+.|++||++.. ..+...+ .+|...|.++.|. ++..++++ .
T Consensus 618 -----------~~v~~v~~~~~~g~~latgs~--dg~I~iwD~~~~--~~~~~~~-~~h~~~V~~v~f~-~~~~lvs~s~ 680 (793)
T PLN00181 618 -----------ANICCVQFPSESGRSLAFGSA--DHKVYYYDLRNP--KLPLCTM-IGHSKTVSYVRFV-DSSTLVSSST 680 (793)
T ss_pred -----------CCeEEEEEeCCCCCEEEEEeC--CCeEEEEECCCC--CccceEe-cCCCCCEEEEEEe-CCCEEEEEEC
Confidence 356778884 56889999988 999999999832 2244555 6899999999997 67788888 9
Q ss_pred CCeEEEEeCCCC-----CceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc
Q 014005 238 DLRINLWNLEIS-----DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312 (432)
Q Consensus 238 d~~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 312 (432)
|++|++||++.. ...+..+ .+|...++.++|+|++ .+|++|+.|+.|++|+...... ...+..
T Consensus 681 D~~ikiWd~~~~~~~~~~~~l~~~-------~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~----~~s~~~ 748 (793)
T PLN00181 681 DNTLKLWDLSMSISGINETPLHSF-------MGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMP----VLSYKF 748 (793)
T ss_pred CCEEEEEeCCCCccccCCcceEEE-------cCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCc----eEEEec
Confidence 999999999732 1334443 7899999999999998 9999999999999999875432 111111
Q ss_pred cccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 313 h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
....+........+...|.+++|+|++.+|++|+. |.|+||++
T Consensus 749 ~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 749 KTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 00000000011223567999999999999999855 99999986
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=2.2e-27 Score=211.39 Aligned_cols=241 Identities=22% Similarity=0.371 Sum_probs=201.5
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
...|...+.++.|+|++++|++++.||.|++|++.+++.. ..+..|.
T Consensus 47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~---------------------------~~~~~~~------ 93 (289)
T cd00200 47 LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV---------------------------RTLTGHT------ 93 (289)
T ss_pred EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce---------------------------EEEeccC------
Confidence 3457788999999999999999999999999999875432 5667787
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
..+.++.| +++++++++++.|+.+.+||+.+++.... +..+. ..+.++.+++++.+++.
T Consensus 94 ------~~i~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~-----------~~i~~~~~~~~~~~l~~ 152 (289)
T cd00200 94 ------SYVSSVAF--SPDGRILSSSSRDKTIKVWDVETGKCLTT--LRGHT-----------DWVNSVAFSPDGTFVAS 152 (289)
T ss_pred ------CcEEEEEE--cCCCCEEEEecCCCeEEEEECCCcEEEEE--eccCC-----------CcEEEEEEcCcCCEEEE
Confidence 88999999 77888888888899999999986653322 22333 67899999999888888
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
+.. ++.+++||++ ..+....+ ..|...+.++.|+|+++.++++ .|+.+++||++ .+.....+ ..|
T Consensus 153 ~~~--~~~i~i~d~~---~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~-------~~~ 218 (289)
T cd00200 153 SSQ--DGTIKLWDLR---TGKCVATL-TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS-TGKCLGTL-------RGH 218 (289)
T ss_pred EcC--CCcEEEEEcc---ccccceeE-ecCccccceEEECCCcCEEEEecCCCcEEEEECC-CCceecch-------hhc
Confidence 886 8999999998 56667777 6788899999999999999988 89999999998 45555543 578
Q ss_pred CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~ 346 (432)
...+.++.|+|++ .++++++.||.|++||+.+++. ...+..| ...+.+++|+|++++|++++
T Consensus 219 ~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~~----~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 219 ENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGEC----VQTLSGH-------------TNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred CCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCcee----EEEcccc-------------CCcEEEEEECCCCCEEEEec
Confidence 8899999999997 8999888899999999997665 4666675 67899999999999999975
Q ss_pred C-CeEEEEe
Q 014005 347 Y-MNLKVFR 354 (432)
Q Consensus 347 ~-~~i~iwd 354 (432)
. +.+++|+
T Consensus 281 ~d~~i~iw~ 289 (289)
T cd00200 281 ADGTIRIWD 289 (289)
T ss_pred CCCeEEecC
Confidence 4 9999996
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=2.5e-29 Score=209.56 Aligned_cols=259 Identities=12% Similarity=0.229 Sum_probs=203.4
Q ss_pred ccchhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccc
Q 014005 2 ILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQM 81 (432)
Q Consensus 2 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 81 (432)
|+++.-+-....|+-+..+- .....+|++.|.|+.|. .+.|++|+.|.+|++||+++++.+
T Consensus 210 iVSGlrDnTikiWD~n~~~c---~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l-------------- 270 (499)
T KOG0281|consen 210 IVSGLRDNTIKIWDKNSLEC---LKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL-------------- 270 (499)
T ss_pred hhcccccCceEEeccccHHH---HHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh--------------
Confidence 44554555666776664433 23456799999999996 558999999999999999998744
Q ss_pred cccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCCc
Q 014005 82 DFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPF 160 (432)
Q Consensus 82 ~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~ 160 (432)
.++-+|. +.|..+.| + +.++++++.|.++.+||+.... ......+.+|.
T Consensus 271 -------------~tlihHc------------eaVLhlrf--~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr- 320 (499)
T KOG0281|consen 271 -------------NTLIHHC------------EAVLHLRF--S--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR- 320 (499)
T ss_pred -------------hHHhhhc------------ceeEEEEE--e--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhh-
Confidence 6788898 99999999 2 4599999999999999997654 11112223333
Q ss_pred cccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCC
Q 014005 161 VSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL 239 (432)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~ 239 (432)
..|..+.|+.. ++++++. |.++++|++. +..+++++ .+|...|.|+.+ .++++++| .|.
T Consensus 321 ----------AaVNvVdfd~k--yIVsASg--DRTikvW~~s---t~efvRtl-~gHkRGIAClQY--r~rlvVSGSSDn 380 (499)
T KOG0281|consen 321 ----------AAVNVVDFDDK--YIVSASG--DRTIKVWSTS---TCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDN 380 (499)
T ss_pred ----------hheeeeccccc--eEEEecC--CceEEEEecc---ceeeehhh-hcccccceehhc--cCeEEEecCCCc
Confidence 56677777654 8888887 9999999999 88999999 899999999887 67899999 999
Q ss_pred eEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccc-----ceeecccc
Q 014005 240 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS-----ARILRDAA 314 (432)
Q Consensus 240 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~h~ 314 (432)
+|++||++ .+.+++.+ ++|..-|+++.|+. +.+++|+.||+|++||+..+...... +..+..
T Consensus 381 tIRlwdi~-~G~cLRvL-------eGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~-- 447 (499)
T KOG0281|consen 381 TIRLWDIE-CGACLRVL-------EGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE-- 447 (499)
T ss_pred eEEEEecc-ccHHHHHH-------hchHHhhhheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhh--
Confidence 99999999 78899877 99999999999973 67999999999999999876432110 223333
Q ss_pred cccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005 315 ESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
|.+.|..+.|. ...++++ -+.+|-|||.
T Consensus 448 -----------hsgRVFrLQFD--~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 448 -----------HSGRVFRLQFD--EFQIISSSHDDTILIWDF 476 (499)
T ss_pred -----------ccceeEEEeec--ceEEEeccCCCeEEEEEc
Confidence 37899999996 4466665 4499999999
No 56
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=3.7e-28 Score=199.70 Aligned_cols=233 Identities=15% Similarity=0.195 Sum_probs=182.2
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
-.|++++.+.+|+|||.++|||+.|-.|+|.|++...... .-+++...+. .. ....++++-.|.
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks----~~~em~~~~~--qa---~hPvIRTlYDH~------- 172 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS----KPKEMISGDT--QA---RHPVIRTLYDHV------- 172 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc----chhhhccCCc--cc---CCceEeehhhcc-------
Confidence 3588999999999999999999999999999987432110 0000000000 00 123556777787
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
+.|+++.| +|....|++|+.|++|++||......++....-.. ...++++.|+|.|.++..|
T Consensus 173 -----devn~l~F--HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd-----------~~~vrsiSfHPsGefllvg 234 (430)
T KOG0640|consen 173 -----DEVNDLDF--HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD-----------TEPVRSISFHPSGEFLLVG 234 (430)
T ss_pred -----Ccccceee--cchhheEEeccCCCeEEEEecccHHHHHHHHHhhc-----------cceeeeEeecCCCceEEEe
Confidence 99999999 88999999999999999999976554333222222 2689999999999999999
Q ss_pred eeeccceEEEEeecccccceeeEEe--ecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVY--PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
.. -..+++||++ +.+|.-.- ..+|.+.|+++.+++.+++.++| .||.|++||-- .++|++++ -..
T Consensus 235 Td--Hp~~rlYdv~---T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV-S~rCv~t~------~~A 302 (430)
T KOG0640|consen 235 TD--HPTLRLYDVN---TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGV-SNRCVRTI------GNA 302 (430)
T ss_pred cC--CCceeEEecc---ceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccc-cHHHHHHH------Hhh
Confidence 98 7799999999 66665543 25789999999999999999999 99999999987 68888876 245
Q ss_pred CC-cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc
Q 014005 266 LT-EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312 (432)
Q Consensus 266 ~~-~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 312 (432)
|. +.|++..|..++ +++++.+.|..+++|.+.+++. ++.+.+
T Consensus 303 H~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~----l~~YtG 345 (430)
T KOG0640|consen 303 HGGSEVCSAVFTKNG-KYILSSGKDSTVKLWEISTGRM----LKEYTG 345 (430)
T ss_pred cCCceeeeEEEccCC-eEEeecCCcceeeeeeecCCce----EEEEec
Confidence 54 579999999999 9999999999999999999886 455544
No 57
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.3e-27 Score=201.62 Aligned_cols=271 Identities=14% Similarity=0.220 Sum_probs=209.0
Q ss_pred cchhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCC---EEEEecccceEEEEEecCCcCCCCccccchhhhc
Q 014005 3 LNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEK 79 (432)
Q Consensus 3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~---~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 79 (432)
|.+.++.....|..+. +......+|+++|.++++--... .+++++.|+++++|.++.+...
T Consensus 119 ltgsYDg~~riWd~~G----k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~------------ 182 (423)
T KOG0313|consen 119 LTGSYDGTSRIWDLKG----KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK------------ 182 (423)
T ss_pred EEeecCCeeEEEecCC----ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh------------
Confidence 3344444455554442 22344568999999887754333 5999999999999999887643
Q ss_pred cccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-----------
Q 014005 80 QMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK----------- 148 (432)
Q Consensus 80 ~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----------- 148 (432)
.+.....+||. ..|.+++. .++|.++++|+.|..|++|+.....
T Consensus 183 -----------~~~~~~~~GHk------------~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 183 -----------VKALKVCRGHK------------RSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred -----------hhHHhHhcccc------------cceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchhh
Confidence 12233455999 99999999 8899999999999999999943211
Q ss_pred ------------eeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecC
Q 014005 149 ------------VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHA 216 (432)
Q Consensus 149 ------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~ 216 (432)
...+..+.+|. .+|.++.|++ ...+++++. |.+|+.||+. .+.++..+ .
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt-----------~~Vs~V~w~d-~~v~yS~Sw--DHTIk~WDle---tg~~~~~~--~ 298 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHT-----------EPVSSVVWSD-ATVIYSVSW--DHTIKVWDLE---TGGLKSTL--T 298 (423)
T ss_pred hhhhhhhhcccccCceEEecccc-----------cceeeEEEcC-CCceEeecc--cceEEEEEee---cccceeee--e
Confidence 11122334444 7888999988 777888888 9999999999 66666665 3
Q ss_pred CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 014005 217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (432)
Q Consensus 217 ~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iw 295 (432)
....++++..+|..+.|++| .|..+++||.+..+..+-.. ++.+|.++|.++.|+|.+..+|++|+.|+++++|
T Consensus 299 ~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~-----s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klW 373 (423)
T KOG0313|consen 299 TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ-----SLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLW 373 (423)
T ss_pred cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEE-----eeecchhhhhheecCCCCceEEEEEecCCeEEEE
Confidence 45689999999999999999 99999999999654443322 4589999999999999988899999999999999
Q ss_pred EccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 296 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
|+|+.+-. +..+.+| ...|.++.|+. +.+|++| .|++|+|+.-
T Consensus 374 DvRS~k~p---lydI~~h-------------~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 374 DVRSTKAP---LYDIAGH-------------NDKVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EeccCCCc---ceeeccC-------------CceEEEEeccC-CceEEeccCcceEEEecc
Confidence 99987632 6788887 78999999985 5688886 5699999865
No 58
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.2e-26 Score=217.01 Aligned_cols=270 Identities=13% Similarity=0.093 Sum_probs=196.4
Q ss_pred hhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCccee
Q 014005 15 KCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK 94 (432)
Q Consensus 15 ~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 94 (432)
||+++||+. .+...+-..|....+++++..+++++.+.....|+...+..+. .+...+. .....
T Consensus 5 k~rh~~g~~--~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~-------~~~~~G~-------~~~~~ 68 (493)
T PTZ00421 5 RFRHTQGVP--ARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVL-------KHTDYGK-------LASNP 68 (493)
T ss_pred ccccccccc--CCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEEe-------ecccccc-------CCCCC
Confidence 677777733 3333444567777788887778888888888888865543110 0000000 00011
Q ss_pred eeeecCCccccccchhhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcce-----eeeeecCCCCccccccccc
Q 014005 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKV-----KKIKEMDHFPFVSSENTLL 168 (432)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~ 168 (432)
..+.+|. +.|.+++| +| ++++|++|+.|++|++||+..+.. ..+..+..|.
T Consensus 69 ~~l~GH~------------~~V~~v~f--sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~--------- 125 (493)
T PTZ00421 69 PILLGQE------------GPIIDVAF--NPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT--------- 125 (493)
T ss_pred ceEeCCC------------CCEEEEEE--cCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC---------
Confidence 2477898 99999999 77 788999999999999999976532 1233444455
Q ss_pred cccccccccCCCCC-cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 014005 169 AEKNFMNEHNPPSF-AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL 246 (432)
Q Consensus 169 ~~~~i~~~~~~~~~-~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~ 246 (432)
..|.+++|+|+. ..+++++. |+.|++||++ .++....+ .+|...|.+++|+|++..|+++ .|++|++||+
T Consensus 126 --~~V~~l~f~P~~~~iLaSgs~--DgtVrIWDl~---tg~~~~~l-~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~ 197 (493)
T PTZ00421 126 --KKVGIVSFHPSAMNVLASAGA--DMVVNVWDVE---RGKAVEVI-KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDP 197 (493)
T ss_pred --CcEEEEEeCcCCCCEEEEEeC--CCEEEEEECC---CCeEEEEE-cCCCCceEEEEEECCCCEEEEecCCCEEEEEEC
Confidence 789999999986 67888888 9999999998 66777777 7899999999999999999999 9999999999
Q ss_pred CCCCceeeEeecCCCCcCCCCcc-eEEEEEcCCCCcEEEEEe----CCCeEEEEEccccccccccceeecccccccCCcc
Q 014005 247 EISDQCFNIVDMKPSNMDDLTEV-ITSAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKS 321 (432)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~ 321 (432)
+ .+..+..+ .+|.+. +..+.|.+++ ..+++++ .|+.|++||+++.... ......+
T Consensus 198 r-sg~~v~tl-------~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p---~~~~~~d-------- 257 (493)
T PTZ00421 198 R-DGTIVSSV-------EAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASP---YSTVDLD-------- 257 (493)
T ss_pred C-CCcEEEEE-------ecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCc---eeEeccC--------
Confidence 9 56666554 666653 4567899987 6666544 4789999999875532 2333221
Q ss_pred ceeeeecceeEEEEcCCCCEEEEe--eCCeEEEEec
Q 014005 322 FFTEIIASISDIKFANDGQHLLSR--DYMNLKVFRY 355 (432)
Q Consensus 322 ~~~~~~~~v~~~~~s~dg~~l~s~--~~~~i~iwd~ 355 (432)
....+....|++++.+|+++ +|+.|++||+
T Consensus 258 ----~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 258 ----QSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred ----CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 12456667899999988875 3699999999
No 59
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.1e-28 Score=192.41 Aligned_cols=243 Identities=15% Similarity=0.195 Sum_probs=194.4
Q ss_pred CCcEEEEEEcCCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 32 VDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 32 ~~~V~~~~fsp~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
.+.+..++|+++. +.+++++.||+++|||.... ..++..++.|.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~--------------------------s~Pi~~~kEH~--------- 104 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP--------------------------SKPIHKFKEHK--------- 104 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCC--------------------------CcchhHHHhhh---------
Confidence 6789999999865 56888999999999995432 23557788898
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc-ceecce
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHLE 189 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~ 189 (432)
..|.++.|.+ .+++.+++++.|++|++|+...++ .+..+.+|. ..|...+|+|... .++..+
T Consensus 105 ---~EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r~~--Sv~Tf~gh~-----------~~Iy~a~~sp~~~nlfas~S 167 (311)
T KOG0277|consen 105 ---REVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNRPN--SVQTFNGHN-----------SCIYQAAFSPHIPNLFASAS 167 (311)
T ss_pred ---hheEEecccc-ccceeEEeeccCCceEeecCCCCc--ceEeecCCc-----------cEEEEEecCCCCCCeEEEcc
Confidence 9999999953 456678888999999999998766 444456666 8899999999854 445555
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
. |+.+++||++. .++.+. + ..|...|.++.|+. +.+.+++| .|+.|+.||++....++..+ .+|.
T Consensus 168 g--d~~l~lwdvr~--~gk~~~-i-~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL-------~gh~ 234 (311)
T KOG0277|consen 168 G--DGTLRLWDVRS--PGKFMS-I-EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL-------NGHG 234 (311)
T ss_pred C--CceEEEEEecC--CCceeE-E-EeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee-------cCCc
Confidence 5 99999999885 344444 4 68889999999997 45567788 99999999999666665554 8999
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC-CCCEEEEe-
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSR- 345 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~s~- 345 (432)
-.|+.++|||....+||+++.|=+++|||...+.-+ +.+...| ..-+.++.||+ ++.++|+.
T Consensus 235 ~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~---~e~~~~H-------------tEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 235 LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA---IETVDHH-------------TEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred eEEEEEecCcchhhHhhhccccceEEecccccchhh---hhhhhcc-------------ceEEeccccccccCceeeecc
Confidence 999999999988789999999999999998865543 4566665 77899999998 46688874
Q ss_pred eCCeEEEEec
Q 014005 346 DYMNLKVFRY 355 (432)
Q Consensus 346 ~~~~i~iwd~ 355 (432)
=|+.++||+.
T Consensus 299 WDe~l~Vw~p 308 (311)
T KOG0277|consen 299 WDELLYVWNP 308 (311)
T ss_pred cccceeeecc
Confidence 5699999984
No 60
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-27 Score=190.21 Aligned_cols=256 Identities=16% Similarity=0.228 Sum_probs=202.4
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
-+|.+.|..+..+--|+.|||++.|++|+|+..++... ...+.++.||.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------------s~ll~~L~Gh~------- 56 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------------SKLLAELTGHS------- 56 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------------ceeeeEecCCC-------
Confidence 46889999999888899999999999999999987642 24567899999
Q ss_pred hhhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc--ce
Q 014005 109 SLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA--HG 185 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~ 185 (432)
++|..++|. +| .|..|++++.||+|.||+-.+++..+...+..|. ..+.+++|.|... .|
T Consensus 57 -----GPVwqv~wa-hPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~-----------~SVNsV~wapheygl~L 119 (299)
T KOG1332|consen 57 -----GPVWKVAWA-HPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS-----------ASVNSVAWAPHEYGLLL 119 (299)
T ss_pred -----CCeeEEeec-ccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc-----------ccceeecccccccceEE
Confidence 999999996 34 6899999999999999999999888887787777 8999999998855 45
Q ss_pred ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC---C-----------CEEEEE-cCCeEEEEeCCCCC
Q 014005 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---C-----------ETFVSA-DDLRINLWNLEISD 250 (432)
Q Consensus 186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~-~d~~i~lwd~~~~~ 250 (432)
+.++. ||.|.+.+.+........+.. ..|.-.+++++|.|. | +.|++| .|..|++|+.+...
T Consensus 120 acasS--DG~vsvl~~~~~g~w~t~ki~-~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~ 196 (299)
T KOG1332|consen 120 ACASS--DGKVSVLTYDSSGGWTTSKIV-FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS 196 (299)
T ss_pred EEeeC--CCcEEEEEEcCCCCccchhhh-hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc
Confidence 55555 999999999865222233333 789999999999986 4 458999 99999999998321
Q ss_pred ceeeEeecCCCCcCCCCcceEEEEEcCCC---CcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeee
Q 014005 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIY---CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (432)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 327 (432)
-.+. .++.+|...|+.++|.|.- ...||+++.||++.||..+...... ....++. ..
T Consensus 197 w~~e------~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w-k~tll~~-------------f~ 256 (299)
T KOG1332|consen 197 WKLE------RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW-KKTLLEE-------------FP 256 (299)
T ss_pred hhhh------hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc-ccccccc-------------CC
Confidence 1111 1358999999999999965 2589999999999999876221110 0112221 14
Q ss_pred cceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005 328 ASISDIKFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 328 ~~v~~~~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
..+..+.||..|..|+.+ +|+.+.+|.-
T Consensus 257 ~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 257 DVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred cceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 689999999999999985 6699999976
No 61
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.5e-28 Score=206.38 Aligned_cols=263 Identities=14% Similarity=0.170 Sum_probs=204.0
Q ss_pred hccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccc
Q 014005 7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST 86 (432)
Q Consensus 7 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (432)
.+.....|+....-.-+--.....|..+|.-+.||||.++|++|+.|..+++||..++...
T Consensus 244 kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~------------------- 304 (519)
T KOG0293|consen 244 KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR------------------- 304 (519)
T ss_pred CCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh-------------------
Confidence 3444455554422111223456789999999999999999999999999999999998643
Q ss_pred ccCCcceeeee-ecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccc
Q 014005 87 SHPEYRYKTEF-QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN 165 (432)
Q Consensus 87 ~~p~~~~~~~~-~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 165 (432)
..+ ++|. ..+.+.+| -|||..|++|+.|+++..||+.+...........
T Consensus 305 --------~~y~~~~~------------~S~~sc~W--~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~-------- 354 (519)
T KOG0293|consen 305 --------HLYPSGLG------------FSVSSCAW--CPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRD-------- 354 (519)
T ss_pred --------hhcccCcC------------CCcceeEE--ccCCceeEecCCCCcEEEecCCcchhhccccccc--------
Confidence 122 2233 67899999 6899999999999999999998766444333322
Q ss_pred ccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEE
Q 014005 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW 244 (432)
Q Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lw 244 (432)
..|.+++.++++++++.... |..+++++.+ +..++... .....|++++.+.+++++++. .+..+++|
T Consensus 355 -----~~v~dlait~Dgk~vl~v~~--d~~i~l~~~e---~~~dr~li--se~~~its~~iS~d~k~~LvnL~~qei~LW 422 (519)
T KOG0293|consen 355 -----PKVHDLAITYDGKYVLLVTV--DKKIRLYNRE---ARVDRGLI--SEEQPITSFSISKDGKLALVNLQDQEIHLW 422 (519)
T ss_pred -----ceeEEEEEcCCCcEEEEEec--ccceeeechh---hhhhhccc--cccCceeEEEEcCCCcEEEEEcccCeeEEe
Confidence 45889999999999999887 9999999988 43444332 345689999999999999999 99999999
Q ss_pred eCCCCCceeeEeecCCCCcCCCCc--ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccc
Q 014005 245 NLEISDQCFNIVDMKPSNMDDLTE--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (432)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~ 322 (432)
|++ ....++.+ .+|.. .+-.-+|--.+..++|+|++|+.|+||+..+|++ +..+.+|
T Consensus 423 Dl~-e~~lv~kY-------~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl----l~~LsGH--------- 481 (519)
T KOG0293|consen 423 DLE-ENKLVRKY-------FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL----LAVLSGH--------- 481 (519)
T ss_pred ecc-hhhHHHHh-------hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce----eEeecCC---------
Confidence 999 55555433 56653 3444566543348999999999999999999998 7999998
Q ss_pred eeeeecceeEEEEcCCC-CEEEEeeC-CeEEEEec
Q 014005 323 FTEIIASISDIKFANDG-QHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 323 ~~~~~~~v~~~~~s~dg-~~l~s~~~-~~i~iwd~ 355 (432)
...|++++|+|.. .++|+++| |+||||.+
T Consensus 482 ----s~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 482 ----SKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred ----cceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 8899999999965 56788755 99999987
No 62
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=8.3e-26 Score=177.99 Aligned_cols=266 Identities=19% Similarity=0.261 Sum_probs=198.9
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
.+..+..|.+++|+|.|.+.|+|++..++||.....-..+ ... +.. ..-|.....+.-+-|.
T Consensus 28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~--r~~-------hea---~~~pp~v~~kr~khhk------ 89 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL--RHA-------HEA---AKQPPSVLCKRNKHHK------ 89 (350)
T ss_pred EecchhheeeEEecCCCceEEeccCCceEEEEccccccCc--ccc-------ccc---ccCCCeEEeeeccccC------
Confidence 4566889999999999999999999999999875432111 000 000 1111111223334566
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCccee---eeeecCCCCccccccccccccccccccCCCC---
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK---KIKEMDHFPFVSSENTLLAEKNFMNEHNPPS--- 181 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--- 181 (432)
+.|+|.+| +|+|+++++|++|++|++...+...+. .-.+++.|. +.|++++|-.+
T Consensus 90 ------gsiyc~~w--s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhd-----------gtirdl~fld~~~s 150 (350)
T KOG0641|consen 90 ------GSIYCTAW--SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD-----------GTIRDLAFLDDPES 150 (350)
T ss_pred ------ccEEEEEe--cCccCeEEecCCCceEEEEecccccccccCcceeeeecC-----------CceeeeEEecCCCc
Confidence 99999999 999999999999999999876544322 223445555 88999998543
Q ss_pred -CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecC
Q 014005 182 -FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (432)
Q Consensus 182 -~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~ 259 (432)
+..+++++. .|..|.+-|.. .++..+.+ .+|++.|.++- +=++-.+++| .|.+|++||++ -..++++++-.
T Consensus 151 ~~~il~s~ga-gdc~iy~tdc~---~g~~~~a~-sghtghilaly-swn~~m~~sgsqdktirfwdlr-v~~~v~~l~~~ 223 (350)
T KOG0641|consen 151 GGAILASAGA-GDCKIYITDCG---RGQGFHAL-SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLR-VNSCVNTLDND 223 (350)
T ss_pred CceEEEecCC-CcceEEEeecC---CCCcceee-cCCcccEEEEE-EecCcEEEccCCCceEEEEeee-ccceeeeccCc
Confidence 344444432 25567777777 78888888 89999998873 3357789999 99999999999 56777776332
Q ss_pred CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC
Q 014005 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (432)
Q Consensus 260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg 339 (432)
...-.-.++.|.+++..|.| ++|++|-.|...-+||+|.+++ ++.|..| ...|.++.|||..
T Consensus 224 ~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r~----iq~f~ph-------------sadir~vrfsp~a 285 (350)
T KOG0641|consen 224 FHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRM----IQRFHPH-------------SADIRCVRFSPGA 285 (350)
T ss_pred ccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCce----eeeeCCC-------------ccceeEEEeCCCc
Confidence 22111224679999999999 9999999999999999998887 6888887 8899999999999
Q ss_pred CEEEEeeC-CeEEEEec
Q 014005 340 QHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 340 ~~l~s~~~-~~i~iwd~ 355 (432)
.||++|++ ..|++=|+
T Consensus 286 ~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 286 HYLLTCSYDMKIKLTDL 302 (350)
T ss_pred eEEEEecccceEEEeec
Confidence 99999977 99999999
No 63
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=4.4e-27 Score=205.73 Aligned_cols=298 Identities=15% Similarity=0.106 Sum_probs=206.2
Q ss_pred CCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (432)
Q Consensus 25 ~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~ 104 (432)
+++.-.|+..|+++++.|.|-.|++|+.|.+|++||+...... -+.++.+.-..+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas--------------------~~~fr~l~P~E~----- 214 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS--------------------MRSFRQLQPCET----- 214 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEeccccccc--------------------chhhhccCcccc-----
Confidence 4444567889999999999999999999999999999875421 111122222223
Q ss_pred cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeee----------ecCCCCccccccccccccccc
Q 014005 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK----------EMDHFPFVSSENTLLAEKNFM 174 (432)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~ 174 (432)
..|.+++| ++.|..|++.+..-..+|+|-.+.++..+. .-.+|. ..+.
T Consensus 215 ---------h~i~sl~y--s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHi-----------a~lt 272 (641)
T KOG0772|consen 215 ---------HQINSLQY--SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHI-----------AELT 272 (641)
T ss_pred ---------cccceeee--cCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCce-----------eeee
Confidence 45899999 889999999888889999997765432221 122333 6778
Q ss_pred cccCCCCCc-ceecceeeccceEEEEeecccccceeeEEee----cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCC
Q 014005 175 NEHNPPSFA-HGYHLEWTENMATKIANVGNSVHARCQKVYP----HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (432)
Q Consensus 175 ~~~~~~~~~-~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~ 248 (432)
+..|+|..+ .+++++. ||++++||++.... ..+++. .+..-.++.++|+++|+.+|+| .||.|.+|+...
T Consensus 273 ~g~whP~~k~~FlT~s~--DgtlRiWdv~~~k~--q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~ 348 (641)
T KOG0772|consen 273 CGCWHPDNKEEFLTCSY--DGTLRIWDVNNTKS--QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGS 348 (641)
T ss_pred ccccccCcccceEEecC--CCcEEEEecCCchh--heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCC
Confidence 889999854 4556666 99999999986432 222221 2334468899999999999999 999999999862
Q ss_pred CCceeeEeecCCCCcCCCCc--ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeee
Q 014005 249 SDQCFNIVDMKPSNMDDLTE--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 326 (432)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 326 (432)
........ .-..|.. .|+++.||++| ++|++-+.|+++++||+++.+.+. ..+.+= . .
T Consensus 349 ~~v~p~~~-----vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkpL---~~~tgL-~--t-------- 408 (641)
T KOG0772|consen 349 RTVRPVMK-----VKDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKPL---NVRTGL-P--T-------- 408 (641)
T ss_pred cccccceE-----eeeccCCCCceeEEEecccc-chhhhccCCCceeeeeccccccch---hhhcCC-C--c--------
Confidence 22111100 1156666 89999999999 999999999999999999877653 333330 0 0
Q ss_pred ecceeEEEEcCCCCEEEEee------C-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecc
Q 014005 327 IASISDIKFANDGQHLLSRD------Y-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLY 396 (432)
Q Consensus 327 ~~~v~~~~~s~dg~~l~s~~------~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 396 (432)
..+-+.++|||+.++|++|. . +.+.+||- ..++.+.+... .+.....+..+-.|..|+-
T Consensus 409 ~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a-----------Svv~~~WhpkLNQi~~gsg 477 (641)
T KOG0772|consen 409 PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA-----------SVVRCLWHPKLNQIFAGSG 477 (641)
T ss_pred cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc-----------eEEEEeecchhhheeeecC
Confidence 24667899999999999853 1 78999998 33343333221 0000001112225888899
Q ss_pred cceeeeec
Q 014005 397 LINLSALS 404 (432)
Q Consensus 397 ~~~i~~~~ 404 (432)
||.+++|-
T Consensus 478 dG~~~vyY 485 (641)
T KOG0772|consen 478 DGTAHVYY 485 (641)
T ss_pred CCceEEEE
Confidence 99999876
No 64
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.1e-26 Score=188.64 Aligned_cols=269 Identities=15% Similarity=0.217 Sum_probs=204.4
Q ss_pred CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchh-----hhccccccc-ccc-----------CCcce
Q 014005 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSE-----LEKQMDFTS-TSH-----------PEYRY 93 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~-----------p~~~~ 93 (432)
....|+++.|+++|.+|++++.|.+++|||..+++..+........ +..+...++ +.. -..++
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 3678999999999999999999999999999988765432222111 122222111 111 14577
Q ss_pred eeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccc
Q 014005 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (432)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 173 (432)
++-|.||. ..|++|+. +|-++.+++++.|++|++||++..++..+......
T Consensus 93 lRYF~GH~------------~~V~sL~~--sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--------------- 143 (311)
T KOG1446|consen 93 LRYFPGHK------------KRVNSLSV--SPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--------------- 143 (311)
T ss_pred EEEcCCCC------------ceEEEEEe--cCCCCeEEecccCCeEEeeEecCCCCceEEecCCC---------------
Confidence 88899999 99999999 77889999999999999999998776665554332
Q ss_pred ccccCCCCCcceecceeeccceEEEEeecccccceeeEEe--ecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC
Q 014005 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVY--PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD 250 (432)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~ 250 (432)
-.++|+|.|-.++.+.. .+.|++||++.- ...+..++ ......+.+.+.|+|+|++++.+ ..+.+++.|-- .+
T Consensus 144 pi~AfDp~GLifA~~~~--~~~IkLyD~Rs~-dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf-~G 219 (311)
T KOG1446|consen 144 PIAAFDPEGLIFALANG--SELIKLYDLRSF-DKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF-DG 219 (311)
T ss_pred cceeECCCCcEEEEecC--CCeEEEEEeccc-CCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc-CC
Confidence 35789999999998887 569999999864 33444444 23456789999999999999988 99999999987 67
Q ss_pred ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc-cccccCCccceeeeecc
Q 014005 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD-AAESHGSKSFFTEIIAS 329 (432)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~~ 329 (432)
.....+...+... .---+.+|.||+ +++++|+.||+|.+|+++++.. +..+.+ + ..+
T Consensus 220 ~~~~tfs~~~~~~----~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~~----v~~~~~~~-------------~~~ 277 (311)
T KOG1446|consen 220 TVKSTFSGYPNAG----NLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGKK----VAVLRGPN-------------GGP 277 (311)
T ss_pred cEeeeEeeccCCC----CcceeEEECCCC-cEEEEecCCCcEEEEEcCCCcE----eeEecCCC-------------CCC
Confidence 7777663322211 112578899999 9999999999999999999887 566666 3 678
Q ss_pred eeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 330 ISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 330 v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
+.++.|+|.-..+++++ ..+-+|=.
T Consensus 278 ~~~~~fnP~~~mf~sa~-s~l~fw~p 302 (311)
T KOG1446|consen 278 VSCVRFNPRYAMFVSAS-SNLVFWLP 302 (311)
T ss_pred ccccccCCceeeeeecC-ceEEEEec
Confidence 89999999887888776 57777743
No 65
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.1e-27 Score=185.37 Aligned_cols=239 Identities=14% Similarity=0.201 Sum_probs=195.9
Q ss_pred eeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccc
Q 014005 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (432)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 174 (432)
..+..|+ +.|..+.| +-+|++.++++.|++|++|+...+.+.+ .+..|. ..|.
T Consensus 11 ~~l~~~q------------gaV~avry--N~dGnY~ltcGsdrtvrLWNp~rg~lik--tYsghG-----------~EVl 63 (307)
T KOG0316|consen 11 SILDCAQ------------GAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLRGALIK--TYSGHG-----------HEVL 63 (307)
T ss_pred eeecccc------------cceEEEEE--ccCCCEEEEcCCCceEEeecccccceee--eecCCC-----------ceee
Confidence 4567787 99999999 8999999999999999999999888444 444454 6799
Q ss_pred cccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCC-Cce
Q 014005 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQC 252 (432)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~-~~~ 252 (432)
+++.+.+...+.+++. |..+.+||+. +++..+.+ .+|.+.|+.++|+.+...+++| -|.++++||.+.. .++
T Consensus 64 D~~~s~Dnskf~s~Gg--Dk~v~vwDV~---TGkv~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP 137 (307)
T KOG0316|consen 64 DAALSSDNSKFASCGG--DKAVQVWDVN---TGKVDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP 137 (307)
T ss_pred eccccccccccccCCC--CceEEEEEcc---cCeeeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc
Confidence 9999999999998888 9999999999 89999999 8999999999999999999999 9999999999822 124
Q ss_pred eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeE
Q 014005 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (432)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~ 332 (432)
++++ ......|.++.... ..+++|+.||+++.||+|.|++ ..-.-+ .+|++
T Consensus 138 iQil-------dea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l----~sDy~g---------------~pit~ 188 (307)
T KOG0316|consen 138 IQIL-------DEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTL----SSDYFG---------------HPITS 188 (307)
T ss_pred cchh-------hhhcCceeEEEecc---cEEEeeccCCcEEEEEeeccee----ehhhcC---------------Cccee
Confidence 4444 55667799998874 5688999999999999999886 344444 58999
Q ss_pred EEEcCCCCEEEEee-CCeEEEEec---CcceeEeecceeeeehhhhhcccc-cccccceeeEEEEeecccceeeeecc
Q 014005 333 IKFANDGQHLLSRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRF-MSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 333 ~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
++|++||..++.+. ++++++-|- +.++.++.|.... -++ |. .+.....+++|+.||.+.+|+.
T Consensus 189 vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e--------ykldc~--l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 189 VSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME--------YKLDCC--LNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred EEecCCCCEEEEeeccceeeecccchhHHHHHhcccccce--------eeeeee--ecccceeEEeccCCceEEEEEe
Confidence 99999999877764 499999999 8899999987521 111 11 1222346999999999999994
No 66
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.4e-26 Score=211.07 Aligned_cols=285 Identities=11% Similarity=0.091 Sum_probs=228.1
Q ss_pred CccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 26 ~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
.+...|...|.+++||.+...+++|+. +.|+||+..+.+ +++++..
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~k---------------------------ciRTi~~------ 412 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLK---------------------------CIRTITC------ 412 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcc---------------------------eeEEecc------
Confidence 455789999999999999988888765 589999998865 3345432
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 185 (432)
..+.+..| -|.++++++|...|.+.++|+.+..+. .....|. +.+-.++.+|++...
T Consensus 413 --------~y~l~~~F--vpgd~~Iv~G~k~Gel~vfdlaS~~l~--Eti~AHd-----------gaIWsi~~~pD~~g~ 469 (888)
T KOG0306|consen 413 --------GYILASKF--VPGDRYIVLGTKNGELQVFDLASASLV--ETIRAHD-----------GAIWSISLSPDNKGF 469 (888)
T ss_pred --------ccEEEEEe--cCCCceEEEeccCCceEEEEeehhhhh--hhhhccc-----------cceeeeeecCCCCce
Confidence 45788889 578899999999999999999887632 2223444 889999999999999
Q ss_pred ecceeeccceEEEEeeccccc--ceeeEEe------ecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEe
Q 014005 186 YHLEWTENMATKIANVGNSVH--ARCQKVY------PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV 256 (432)
Q Consensus 186 ~~~~~~~~~~v~i~d~~~~~~--~~~~~~~------~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~ 256 (432)
++++. |.+|++||...... +...+.+ .-.-+..|.|+.+|||+++|+++ -|+++++|-++ +-+..-.
T Consensus 470 vT~sa--DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD-tlKFfls- 545 (888)
T KOG0306|consen 470 VTGSA--DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD-TLKFFLS- 545 (888)
T ss_pred EEecC--CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec-ceeeeee-
Confidence 99998 99999999764322 1111111 02346789999999999999999 99999999999 4443333
Q ss_pred ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc
Q 014005 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (432)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s 336 (432)
+-+|.-+|.++..+||+ ++++||+.|.+|++|-+.-|.- -+.+-+| ..+|.++.|-
T Consensus 546 ------LYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGDC----HKS~fAH-------------dDSvm~V~F~ 601 (888)
T KOG0306|consen 546 ------LYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGDC----HKSFFAH-------------DDSVMSVQFL 601 (888)
T ss_pred ------ecccccceeEEeccCCc-CeEEeccCCCceEEeccccchh----hhhhhcc-------------cCceeEEEEc
Confidence 37999999999999999 9999999999999999998764 5778887 8999999999
Q ss_pred CCCCEEEEe-eCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005 337 NDGQHLLSR-DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG 406 (432)
Q Consensus 337 ~dg~~l~s~-~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 406 (432)
|+..++.++ -|+.|+-||- +.++++..|...+| .+....+..++++++.|.+|.+|...
T Consensus 602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~-----------cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVW-----------CLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred ccceeEEEecCcceEEeechhhhhhheeeccchheee-----------eeEEcCCCCeEEeccCCceeEeeecc
Confidence 988777775 5599999988 78888888865333 23334556689999999999999954
No 67
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.1e-26 Score=185.11 Aligned_cols=244 Identities=18% Similarity=0.238 Sum_probs=196.8
Q ss_pred ccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
+...|.+.|.+++|+.+|..||+|+.|+++++|+++..+.. ......+|.
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-------------------------~~~~~~gh~----- 64 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-------------------------KELVYRGHT----- 64 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-------------------------hhhcccCCC-----
Confidence 44568889999999999999999999999999999876532 123567888
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
+.|-.++|.| +...+|++++.|++|++||++.+++....... +.-..+.|+|++.+++
T Consensus 65 -------~svdql~w~~-~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~--------------~eni~i~wsp~g~~~~ 122 (313)
T KOG1407|consen 65 -------DSVDQLCWDP-KHPDLFATASGDKTIRIWDIRSGKCTARIETK--------------GENINITWSPDGEYIA 122 (313)
T ss_pred -------cchhhheeCC-CCCcceEEecCCceEEEEEeccCcEEEEeecc--------------CcceEEEEcCCCCEEE
Confidence 8899999964 56678999999999999999998855443333 3335678999999999
Q ss_pred cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
.+.. +..|.+.|.+ +.+.+..+ .....++.++|+.++.++... ..|.|.|.... .-+++..+ ..
T Consensus 123 ~~~k--dD~it~id~r---~~~~~~~~--~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp-sLkpv~si-------~A 187 (313)
T KOG1407|consen 123 VGNK--DDRITFIDAR---TYKIVNEE--QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP-SLKPVQSI-------KA 187 (313)
T ss_pred EecC--cccEEEEEec---ccceeehh--cccceeeeeeecCCCCEEEEecCCceEEEEecc-cccccccc-------cc
Confidence 9998 8899999988 44544443 345578889999877777766 88999999888 55555544 89
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~ 345 (432)
|.....++.|+|+| ++||+|+.|..+.+||+.. -.| .+.+..+ .-+|..+.||.||++||+|
T Consensus 188 H~snCicI~f~p~G-ryfA~GsADAlvSLWD~~E-LiC---~R~isRl-------------dwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 188 HPSNCICIEFDPDG-RYFATGSADALVSLWDVDE-LIC---ERCISRL-------------DWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred CCcceEEEEECCCC-ceEeeccccceeeccChhH-hhh---heeeccc-------------cCceEEEEeccCcceeecc
Confidence 99999999999999 9999999999999999984 345 4666664 6799999999999999998
Q ss_pred eC-CeEEEEec
Q 014005 346 DY-MNLKVFRY 355 (432)
Q Consensus 346 ~~-~~i~iwd~ 355 (432)
+. ..|-|=++
T Consensus 250 SEDh~IDIA~v 260 (313)
T KOG1407|consen 250 SEDHFIDIAEV 260 (313)
T ss_pred CccceEEeEec
Confidence 65 76655555
No 68
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.9e-27 Score=189.89 Aligned_cols=256 Identities=13% Similarity=0.181 Sum_probs=205.6
Q ss_pred ccCCCcEEEEEEcC---CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc-
Q 014005 29 LQDVDIVSAIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF- 104 (432)
Q Consensus 29 ~~h~~~V~~~~fsp---~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~- 104 (432)
-.|+.+|-.++||| +|-+|++++.|+.-.+-+-+++.-+ .+|.||+.+.
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi---------------------------gtfeghkgavw 63 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI---------------------------GTFEGHKGAVW 63 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE---------------------------EeeeccCccee
Confidence 36899999999985 8889999999998877666665422 3333333110
Q ss_pred ----------------------------cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecC
Q 014005 105 ----------------------------DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD 156 (432)
Q Consensus 105 ----------------------------~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 156 (432)
|-+-+++++.-|..++| +.|.++|++|+.++.+++||++..+. ...++.
T Consensus 64 ~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~A-pp~E~~ 140 (334)
T KOG0278|consen 64 SATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKA-PPKEIS 140 (334)
T ss_pred eeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEe--cccchhhhccchHHHhhhhhccCCCC-Cchhhc
Confidence 22334455677899999 89999999999999999999987652 344556
Q ss_pred CCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE
Q 014005 157 HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA 236 (432)
Q Consensus 157 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 236 (432)
.|+ +.|+.+.|....+.+.+... +++|++||.+ ++..++.+ .....|+++.++++|+++.++
T Consensus 141 ght-----------g~Ir~v~wc~eD~~iLSSad--d~tVRLWD~r---Tgt~v~sL--~~~s~VtSlEvs~dG~ilTia 202 (334)
T KOG0278|consen 141 GHT-----------GGIRTVLWCHEDKCILSSAD--DKTVRLWDHR---TGTEVQSL--EFNSPVTSLEVSQDGRILTIA 202 (334)
T ss_pred CCC-----------CcceeEEEeccCceEEeecc--CCceEEEEec---cCcEEEEE--ecCCCCcceeeccCCCEEEEe
Confidence 666 89999999988888888766 9999999999 77788776 345689999999999999999
Q ss_pred cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceee-ccccc
Q 014005 237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAE 315 (432)
Q Consensus 237 ~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~h~~ 315 (432)
..+.|..||.. .-..++.+ .....|.+..++|+. ..+++|+.|..++.||..++.. +..+ ++|
T Consensus 203 ~gssV~Fwdak-sf~~lKs~--------k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeE----i~~~nkgh-- 266 (334)
T KOG0278|consen 203 YGSSVKFWDAK-SFGLLKSY--------KMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEE----IGSYNKGH-- 266 (334)
T ss_pred cCceeEEeccc-cccceeec--------cCccccccccccCCC-ceEEecCcceEEEEEeccCCce----eeecccCC--
Confidence 99999999999 55555544 233458899999998 9999999999999999999987 3444 676
Q ss_pred ccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEecCcce
Q 014005 316 SHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRYEPVM 359 (432)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~~~~~ 359 (432)
.++|.++.|+|||..-|+|+. |+|++|...+.+
T Consensus 267 -----------~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 267 -----------FGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred -----------CCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 799999999999999999865 999999994433
No 69
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-26 Score=209.35 Aligned_cols=236 Identities=15% Similarity=0.208 Sum_probs=200.7
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeec-CCccccccchh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSL 110 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-h~~~~~~~~~~ 110 (432)
.+.|+++.|+++|.+||+|..+|.|.|||....+.. ..+.+ |.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~---------------------------~~~~~~h~--------- 260 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT---------------------------RTLRGSHA--------- 260 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc---------------------------ccccCCcC---------
Confidence 689999999999999999999999999999887644 56666 77
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
..|.+++| . +..+.+|+.|+.|..+|++..+...- .+..|. ..|..+.|++++.++++|+.
T Consensus 261 ---~rvg~laW--~--~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~-----------qeVCgLkws~d~~~lASGgn 321 (484)
T KOG0305|consen 261 ---SRVGSLAW--N--SSVLSSGSRDGKILNHDVRISQHVVS-TLQGHR-----------QEVCGLKWSPDGNQLASGGN 321 (484)
T ss_pred ---ceeEEEec--c--CceEEEecCCCcEEEEEEecchhhhh-hhhccc-----------ceeeeeEECCCCCeeccCCC
Confidence 99999999 3 67899999999999999987763222 355555 78899999999999999999
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-CCEEEEE---cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~---~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
|+.+.|||.. ...++..+ ..|...|.+++|+|- ...||+| .|+.|++||.. ++..+..+ .-
T Consensus 322 --DN~~~Iwd~~---~~~p~~~~-~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~-~g~~i~~v--------dt 386 (484)
T KOG0305|consen 322 --DNVVFIWDGL---SPEPKFTF-TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN-TGARIDSV--------DT 386 (484)
T ss_pred --ccceEeccCC---CccccEEE-eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC-CCcEeccc--------cc
Confidence 9999999996 66677777 899999999999994 5577776 69999999999 67776653 44
Q ss_pred CcceEEEEEcCCCCcEEEEE--eCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 267 TEVITSAEFHPIYCNLLAYS--SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
.+.|+++.|++.. +-|+++ ..++.|.||+..+.+. +..+.+| ...|..+++||||..+++
T Consensus 387 gsQVcsL~Wsk~~-kEi~sthG~s~n~i~lw~~ps~~~----~~~l~gH-------------~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 387 GSQVCSLIWSKKY-KELLSTHGYSENQITLWKYPSMKL----VAELLGH-------------TSRVLYLALSPDGETIVT 448 (484)
T ss_pred CCceeeEEEcCCC-CEEEEecCCCCCcEEEEeccccce----eeeecCC-------------cceeEEEEECCCCCEEEE
Confidence 5779999999998 545543 3677999999998665 6888897 889999999999999999
Q ss_pred e-eCCeEEEEec
Q 014005 345 R-DYMNLKVFRY 355 (432)
Q Consensus 345 ~-~~~~i~iwd~ 355 (432)
| .|.++++|++
T Consensus 449 ~a~DETlrfw~~ 460 (484)
T KOG0305|consen 449 GAADETLRFWNL 460 (484)
T ss_pred ecccCcEEeccc
Confidence 7 6699999999
No 70
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=7.9e-26 Score=193.96 Aligned_cols=279 Identities=14% Similarity=0.173 Sum_probs=216.1
Q ss_pred CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
....|.++...|....+++|+.|.++.++|...++.+ ..++||+
T Consensus 218 ~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l---------------------------~~~~Gh~--------- 261 (506)
T KOG0289|consen 218 STPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL---------------------------ATLKGHT--------- 261 (506)
T ss_pred CCCCeeEEeecCCCCcceecCCCCceEEEecchhhhh---------------------------hhccCcc---------
Confidence 3457899999988788999999999999999887654 7899999
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
..|+.+.+ +++...+++++.|..|++|......... ....|. ++|+.+..+|.+.|+...+.
T Consensus 262 ---kki~~v~~--~~~~~~v~~aSad~~i~vws~~~~s~~~--~~~~h~-----------~~V~~ls~h~tgeYllsAs~ 323 (506)
T KOG0289|consen 262 ---KKITSVKF--HKDLDTVITASADEIIRVWSVPLSSEPT--SSRPHE-----------EPVTGLSLHPTGEYLLSASN 323 (506)
T ss_pred ---eEEEEEEe--ccchhheeecCCcceEEeeccccccCcc--cccccc-----------ccceeeeeccCCcEEEEecC
Confidence 99999999 8899999999999999999986554222 122233 78999999999999999998
Q ss_pred eccceEEEEeecccccceeeEEeec-CCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 191 TENMATKIANVGNSVHARCQKVYPH-AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
++...+.|++ ++.++..... ...-.+++.+|+|||.+|.+| .|+.+++||+. ...... .+.+|.+
T Consensus 324 --d~~w~Fsd~~---~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk-s~~~~a-------~Fpght~ 390 (506)
T KOG0289|consen 324 --DGTWAFSDIS---SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK-SQTNVA-------KFPGHTG 390 (506)
T ss_pred --CceEEEEEcc---CCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC-Cccccc-------cCCCCCC
Confidence 9999999998 6666655422 233468999999999999999 99999999999 444444 3489999
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-C
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~ 347 (432)
+|..++|+.+| .+||++..|+.|++||+|.-+. .+++..- + ...+.++.|.+.|.||+.++ +
T Consensus 391 ~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n----~kt~~l~-~-----------~~~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 391 PVKAISFSENG-YWLATAADDGSVKLWDLRKLKN----FKTIQLD-E-----------KKEVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred ceeEEEeccCc-eEEEEEecCCeEEEEEehhhcc----cceeecc-c-----------cccceeEEEcCCCCeEEeecce
Confidence 99999999999 9999999999999999997554 3555441 1 24699999999999999874 3
Q ss_pred CeEEEEec-----CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 348 MNLKVFRY-----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 348 ~~i~iwd~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
=.|++++- ..+..+..|.. ......++....++++|+.|..+++|.
T Consensus 454 l~Vy~~~k~~k~W~~~~~~~~~sg-----------~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 454 LQVYICKKKTKSWTEIKELADHSG-----------LSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred eEEEEEecccccceeeehhhhccc-----------ccceeeecccceEEeeccchhheEEee
Confidence 44444442 23333333321 222233444556789999999888874
No 71
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=2e-26 Score=210.16 Aligned_cols=244 Identities=17% Similarity=0.284 Sum_probs=208.2
Q ss_pred CcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 112 (432)
+.+.|..|-|.++++++|...|.+.+||+....+. .++++|+
T Consensus 413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~---------------------------Eti~AHd----------- 454 (888)
T KOG0306|consen 413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLV---------------------------ETIRAHD----------- 454 (888)
T ss_pred ccEEEEEecCCCceEEEeccCCceEEEEeehhhhh---------------------------hhhhccc-----------
Confidence 37899999999999999999999999999887644 5677899
Q ss_pred hcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccC-----cceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-----QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
+.|++++. +||+..+++|+.|.+|++||..- +..+++..+... ....-...|.++.++|++++++.
T Consensus 455 -gaIWsi~~--~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~------rtLel~ddvL~v~~Spdgk~LaV 525 (888)
T KOG0306|consen 455 -GAIWSISL--SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT------RTLELEDDVLCVSVSPDGKLLAV 525 (888)
T ss_pred -cceeeeee--cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccc------eEEeccccEEEEEEcCCCcEEEE
Confidence 99999999 89999999999999999999742 111111111100 01112478999999999999999
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
+-. |+++++|-++ +.+..-.+ -+|.-+|.|+..+||+..+++| .|.+|++|-++ -+.|-+.+ -+|
T Consensus 526 sLL--dnTVkVyflD---tlKFflsL-YGHkLPV~smDIS~DSklivTgSADKnVKiWGLd-FGDCHKS~-------fAH 591 (888)
T KOG0306|consen 526 SLL--DNTVKVYFLD---TLKFFLSL-YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD-FGDCHKSF-------FAH 591 (888)
T ss_pred Eec--cCeEEEEEec---ceeeeeee-cccccceeEEeccCCcCeEEeccCCCceEEeccc-cchhhhhh-------hcc
Confidence 999 9999999998 66666666 7999999999999999999999 99999999999 56777755 899
Q ss_pred CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~ 346 (432)
...|+++.|-|.. .++.+++.|+.|+-||-.+-+. ++.+.+| ...|++++.+|+|.++++++
T Consensus 592 dDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe~----iq~L~~H-------------~~ev~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 592 DDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFEE----IQKLDGH-------------HSEVWCLAVSPNGSFVVSSS 653 (888)
T ss_pred cCceeEEEEcccc-eeEEEecCcceEEeechhhhhh----heeeccc-------------hheeeeeEEcCCCCeEEecc
Confidence 9999999999988 9999999999999999887665 6889997 78999999999999999975
Q ss_pred C-CeEEEEec
Q 014005 347 Y-MNLKVFRY 355 (432)
Q Consensus 347 ~-~~i~iwd~ 355 (432)
. ..|++|.-
T Consensus 654 hD~sIRlwE~ 663 (888)
T KOG0306|consen 654 HDKSIRLWER 663 (888)
T ss_pred CCceeEeeec
Confidence 4 99999988
No 72
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.8e-26 Score=190.46 Aligned_cols=294 Identities=12% Similarity=0.128 Sum_probs=226.0
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
..+|.+.|+.++-......+.+++.|.+-+||.+++++ |+.++.||.
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~---------------------------CL~~Y~GH~------ 190 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA---------------------------CLATYTGHT------ 190 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeecccc---------------------------ceeeecccc------
Confidence 34799999999998888899999999999999999986 558999999
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccC----cceeeeeecCC------C----Cc-------------
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD----QKVKKIKEMDH------F----PF------------- 160 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~------~----~~------------- 160 (432)
+.|++|.| ++.+.++++++.|++..||...- .+......+.. + ++
T Consensus 191 ------GSVNsikf--h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR 262 (481)
T KOG0300|consen 191 ------GSVNSIKF--HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR 262 (481)
T ss_pred ------cceeeEEe--ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee
Confidence 99999999 88999999999999999998321 00000000000 0 00
Q ss_pred --cccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c
Q 014005 161 --VSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D 237 (432)
Q Consensus 161 --~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~ 237 (432)
++++ .-..+.|.+..|-..+..+++++. |.+..+||++ ++..+..+ .+|....+.++-+|..++++++ .
T Consensus 263 vPl~~l--tgH~~vV~a~dWL~gg~Q~vTaSW--DRTAnlwDVE---tge~v~~L-tGHd~ELtHcstHptQrLVvTsSr 334 (481)
T KOG0300|consen 263 VPLMRL--TGHRAVVSACDWLAGGQQMVTASW--DRTANLWDVE---TGEVVNIL-TGHDSELTHCSTHPTQRLVVTSSR 334 (481)
T ss_pred eeeeee--eccccceEehhhhcCcceeeeeec--cccceeeeec---cCceeccc-cCcchhccccccCCcceEEEEecc
Confidence 0000 012356677778888899999999 9999999999 88899999 8999999999999999999999 9
Q ss_pred CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccccc
Q 014005 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH 317 (432)
Q Consensus 238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~ 317 (432)
|.+.++||.+-.-..+..| ++|...|+++.|.-+. .+++|+.|.+|++||++..+-. +.++..
T Consensus 335 DtTFRLWDFReaI~sV~VF-------QGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRsp---lATIRt----- 397 (481)
T KOG0300|consen 335 DTTFRLWDFREAIQSVAVF-------QGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRSP---LATIRT----- 397 (481)
T ss_pred CceeEeccchhhcceeeee-------cccccceeEEEEecCC--ceeecCCCceEEEeeeccccCc---ceeeec-----
Confidence 9999999999444556665 9999999999999875 5889999999999999987654 566666
Q ss_pred CCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec--Cccee-----EeecceeeeehhhhhcccccccccceeeE
Q 014005 318 GSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY--EPVMT-----LSFCGIYVWILRQLQHSRFMSIYALSCVI 389 (432)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (432)
..+++.++.+..+..||.--| ..|++||+ ..+.. -+.|..++-...++...+.|.
T Consensus 398 ---------dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cn-------- 460 (481)
T KOG0300|consen 398 ---------DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACN-------- 460 (481)
T ss_pred ---------CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccc--------
Confidence 578999999998889998755 99999999 22222 234444333333333333443
Q ss_pred EEEeecccceeeeecc
Q 014005 390 YIITTLYLINLSALSA 405 (432)
Q Consensus 390 ~~~~g~~~~~i~~~~~ 405 (432)
+.++.+|..+.-|..
T Consensus 461 -LftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 461 -LFTCGFDRMVAGWKI 475 (481)
T ss_pred -cccccccceeeeeEe
Confidence 566778888887774
No 73
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2e-25 Score=208.80 Aligned_cols=236 Identities=14% Similarity=0.134 Sum_probs=178.3
Q ss_pred ccccCCCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 27 EELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 27 ~~~~h~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
....|.+.|++++|+| ++++|++|+.|++|+|||+.++..... ....+..+.+|.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~--------------------~~~~l~~L~gH~---- 125 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN--------------------ISDPIVHLQGHT---- 125 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc--------------------cCcceEEecCCC----
Confidence 3457999999999999 889999999999999999976532100 112446788999
Q ss_pred ccchhhhhcceeEEEEEEcCCC-CEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005 106 YLKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
..|.+++| +|++ .+|++++.|++|++||+.+++.. ..+..|. ..|.+++|++++..
T Consensus 126 --------~~V~~l~f--~P~~~~iLaSgs~DgtVrIWDl~tg~~~--~~l~~h~-----------~~V~sla~spdG~l 182 (493)
T PTZ00421 126 --------KKVGIVSF--HPSAMNVLASAGADMVVNVWDVERGKAV--EVIKCHS-----------DQITSLEWNLDGSL 182 (493)
T ss_pred --------CcEEEEEe--CcCCCCEEEEEeCCCEEEEEECCCCeEE--EEEcCCC-----------CceEEEEEECCCCE
Confidence 99999999 7764 68999999999999999987633 3334444 67999999999999
Q ss_pred eecceeeccceEEEEeecccccceeeEEeecCCCCC-eeEEEeCCCCCEEEEE-----cCCeEEEEeCCCCCceeeEeec
Q 014005 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFN-INSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDM 258 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~-----~d~~i~lwd~~~~~~~~~~~~~ 258 (432)
+++++. |+.|++||++ +++.+..+ .+|.+. ...+.|.+++..++++ .|+.|++||++.....+....
T Consensus 183 Latgs~--Dg~IrIwD~r---sg~~v~tl-~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~- 255 (493)
T PTZ00421 183 LCTTSK--DKKLNIIDPR---DGTIVSSV-EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD- 255 (493)
T ss_pred EEEecC--CCEEEEEECC---CCcEEEEE-ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec-
Confidence 999998 9999999998 66677777 677654 4467788887777653 278999999985444444331
Q ss_pred CCCCcCCCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC
Q 014005 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (432)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~ 337 (432)
......+....|++++ ++|++++ .|+.|++||+++++. ....... ...++..++|.|
T Consensus 256 -----~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~~~~----~~~~~~~------------s~~~~~g~~~~p 313 (493)
T PTZ00421 256 -----LDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMNERL----TFCSSYS------------SVEPHKGLCMMP 313 (493)
T ss_pred -----cCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeCCce----EEEeecc------------CCCCCcceEecc
Confidence 1233456677899998 8888877 599999999998775 2333221 134677888888
Q ss_pred C
Q 014005 338 D 338 (432)
Q Consensus 338 d 338 (432)
.
T Consensus 314 k 314 (493)
T PTZ00421 314 K 314 (493)
T ss_pred c
Confidence 5
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.3e-26 Score=198.47 Aligned_cols=239 Identities=15% Similarity=0.233 Sum_probs=199.4
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
.+.|+++.|-.||++||+|+..|.|+|||..+... +..+.+|+
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i---------------------------LR~~~ah~---------- 110 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI---------------------------LRQLYAHQ---------- 110 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHH---------------------------HHHHhhcc----------
Confidence 56799999999999999999999999999655332 26788999
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc-ceeccee
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHLEW 190 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~ 190 (432)
.+|..+.|+| .++..|++|+.|+.+++||+.+... ...+..|. ..|++.+++|... .+++|+.
T Consensus 111 --apv~~~~f~~-~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~ht-----------DYVR~g~~~~~~~hivvtGsY 174 (487)
T KOG0310|consen 111 --APVHVTKFSP-QDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHT-----------DYVRCGDISPANDHIVVTGSY 174 (487)
T ss_pred --CceeEEEecc-cCCeEEEecCCCceEEEEEcCCcEE--EEEecCCc-----------ceeEeeccccCCCeEEEecCC
Confidence 9999999953 4566788889999999999998773 55666777 8999999999865 7788999
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (432)
||.|++||.+... ..+..+ .|..+|..+.+-|.|..++++....+++||+-..++.+.. +..|...|
T Consensus 175 --Dg~vrl~DtR~~~--~~v~el--nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~-------~~~H~KtV 241 (487)
T KOG0310|consen 175 --DGKVRLWDTRSLT--SRVVEL--NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS-------MFNHNKTV 241 (487)
T ss_pred --CceEEEEEeccCC--ceeEEe--cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh-------hhcccceE
Confidence 9999999998431 444444 7889999999999999999999999999999955554432 25599999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCe
Q 014005 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN 349 (432)
Q Consensus 271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~ 349 (432)
+|+++..++ ..|++|+-|+.|++||+.+.+. +..+.- .++|.+++.+||++.++.| ++|.
T Consensus 242 TcL~l~s~~-~rLlS~sLD~~VKVfd~t~~Kv----v~s~~~--------------~~pvLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 242 TCLRLASDS-TRLLSGSLDRHVKVFDTTNYKV----VHSWKY--------------PGPVLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred EEEEeecCC-ceEeecccccceEEEEccceEE----EEeeec--------------ccceeeEEecCCCceEEEecccce
Confidence 999999998 9999999999999999887765 566665 5899999999999999998 6677
Q ss_pred EEEEec
Q 014005 350 LKVFRY 355 (432)
Q Consensus 350 i~iwd~ 355 (432)
+.+=+.
T Consensus 303 v~~rr~ 308 (487)
T KOG0310|consen 303 VSIRRR 308 (487)
T ss_pred eeeehh
Confidence 766654
No 75
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=8.2e-26 Score=186.66 Aligned_cols=287 Identities=15% Similarity=0.145 Sum_probs=188.5
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc-ccccCCccee-------------
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT-STSHPEYRYK------------- 94 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~------------- 94 (432)
-.|.+.|++++|+.||++|||++.|++|+||+++.-... .+.+++.--..+... +.|.|..+.+
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~--eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK--EHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh--hhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 468999999999999999999999999999998764321 122222211222222 4555521111
Q ss_pred ---eeeec----CCccccccchh-hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccc
Q 014005 95 ---TEFQS----HEPEFDYLKSL-EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 166 (432)
Q Consensus 95 ---~~~~~----h~~~~~~~~~~-~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 166 (432)
..-.| |....|.+.-- .+.-.|..+-. ..++.++++++.|..|.+|++++..+..+-..+
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lkGq~L~~idtnq---------- 228 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQ---------- 228 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecCCceeeeecccc----------
Confidence 10000 00000100000 01123445555 667889999999999999999944333332222
Q ss_pred cccccccccccCCCCCcceecceeeccceEEEEeecccccc-----eeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe
Q 014005 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA-----RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR 240 (432)
Q Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~ 240 (432)
..-...+.+|+|++++.+++ --.|++|.+--...+ .....+ .+|...|..++|+++.+.+++. .||+
T Consensus 229 ----~~n~~aavSP~GRFia~~gF--TpDVkVwE~~f~kdG~fqev~rvf~L-kGH~saV~~~aFsn~S~r~vtvSkDG~ 301 (420)
T KOG2096|consen 229 ----SSNYDAAVSPDGRFIAVSGF--TPDVKVWEPIFTKDGTFQEVKRVFSL-KGHQSAVLAAAFSNSSTRAVTVSKDGK 301 (420)
T ss_pred ----ccccceeeCCCCcEEEEecC--CCCceEEEEEeccCcchhhhhhhhee-ccchhheeeeeeCCCcceeEEEecCCc
Confidence 44567889999999999999 557889986432222 223345 7999999999999999999999 9999
Q ss_pred EEEEeCCCCC---ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccccc
Q 014005 241 INLWNLEISD---QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH 317 (432)
Q Consensus 241 i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~ 317 (432)
+++||.+..- +--+++..-+..+..-.+....++++|.+ +.||.+. ...++++..++|+. ...++.-
T Consensus 302 wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~s~-gs~l~~~~se~g~~----~~~~e~~---- 371 (420)
T KOG2096|consen 302 WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG-DSLAVSF-GSDLKVFASEDGKD----YPELEDI---- 371 (420)
T ss_pred EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC-cEEEeec-CCceEEEEcccCcc----chhHHHh----
Confidence 9999986211 11111111111122333445589999999 8887554 55799999998875 3444431
Q ss_pred CCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEe
Q 014005 318 GSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFR 354 (432)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd 354 (432)
|...|.+++|+++|+++++++|..+++..
T Consensus 372 --------h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 372 --------HSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred --------hcCceeeEEecCCCcEEeeecceeeeeec
Confidence 26899999999999999999988888775
No 76
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=5e-25 Score=207.06 Aligned_cols=227 Identities=17% Similarity=0.207 Sum_probs=165.4
Q ss_pred ecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCC-CC
Q 014005 50 GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GS 128 (432)
Q Consensus 50 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~-~~ 128 (432)
|+.++.|++|+..... .+..+.+|. +.|.+++| +|+ +.
T Consensus 50 GG~~gvI~L~~~~r~~---------------------------~v~~L~gH~------------~~V~~laf--sP~~~~ 88 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---------------------------PVIKLKGHT------------SSILDLQF--NPCFSE 88 (568)
T ss_pred CCceeEEEeeecCCCc---------------------------eEEEEcCCC------------CCEEEEEE--cCCCCC
Confidence 5567788888875532 346788999 99999999 775 78
Q ss_pred EEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccce
Q 014005 129 MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHAR 208 (432)
Q Consensus 129 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~ 208 (432)
+|++|+.|++|++||+.++.... .. ...
T Consensus 89 lLASgS~DgtIrIWDi~t~~~~~-~~---------------------------------------------------i~~ 116 (568)
T PTZ00420 89 ILASGSEDLTIRVWEIPHNDESV-KE---------------------------------------------------IKD 116 (568)
T ss_pred EEEEEeCCCeEEEEECCCCCccc-cc---------------------------------------------------ccc
Confidence 99999999999999997543100 00 011
Q ss_pred eeEEeecCCCCCeeEEEeCCCCCEE-EEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEE
Q 014005 209 CQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 286 (432)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~~~~l-~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 286 (432)
++..+ .+|...|.+++|+|++..+ +++ .|++|++||++ .++....+ . |...|.+++|+|+| .+|+++
T Consensus 117 p~~~L-~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~-tg~~~~~i-------~-~~~~V~SlswspdG-~lLat~ 185 (568)
T PTZ00420 117 PQCIL-KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE-NEKRAFQI-------N-MPKKLSSLKWNIKG-NLLSGT 185 (568)
T ss_pred ceEEe-ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC-CCcEEEEE-------e-cCCcEEEEEECCCC-CEEEEE
Confidence 22233 6788999999999998765 577 89999999999 45444433 2 45679999999999 999999
Q ss_pred eCCCeEEEEEccccccccccceeecccccccCCccceeeeecc-----eeEEEEcCCCCEEEE-eeC----CeEEEEec-
Q 014005 287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS-----ISDIKFANDGQHLLS-RDY----MNLKVFRY- 355 (432)
Q Consensus 287 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~-----v~~~~~s~dg~~l~s-~~~----~~i~iwd~- 355 (432)
+.|+.|+|||+++++. +..+.+| .+. +....|++++.+|++ |.+ +.|+|||+
T Consensus 186 s~D~~IrIwD~Rsg~~----i~tl~gH-------------~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 186 CVGKHMHIIDPRKQEI----ASSFHIH-------------DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred ecCCEEEEEECCCCcE----EEEEecc-------------cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 9999999999999876 5778887 333 233456789888887 433 37999999
Q ss_pred ---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005 356 ---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG 406 (432)
Q Consensus 356 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 406 (432)
+++..+..+.. ...+...+..+...++++|+.|++|++|+..
T Consensus 249 ~~~~pl~~~~ld~~---------~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 249 NTTSALVTMSIDNA---------SAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred CCCCceEEEEecCC---------ccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 45555544331 2233333334445567899999999999943
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.3e-25 Score=213.31 Aligned_cols=263 Identities=14% Similarity=0.145 Sum_probs=199.6
Q ss_pred ccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
....|.+.|+|+.|+|||++||+|+.|+.|.||...........+. .+. ..-...++++..+.+|.
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs-----~g~----~~~vE~wk~~~~l~~H~----- 129 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGS-----TGG----AKNVESWKVVSILRGHD----- 129 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccc-----ccc----ccccceeeEEEEEecCC-----
Confidence 3457899999999999999999999999999999874100000000 000 00112578888999999
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
..|.+++| +|++.+|++++.|++|.+|+..+.+ .+..+..|. +.|..+.|+|-|+|++
T Consensus 130 -------~DV~Dv~W--sp~~~~lvS~s~DnsViiwn~~tF~--~~~vl~~H~-----------s~VKGvs~DP~Gky~A 187 (942)
T KOG0973|consen 130 -------SDVLDVNW--SPDDSLLVSVSLDNSVIIWNAKTFE--LLKVLRGHQ-----------SLVKGVSWDPIGKYFA 187 (942)
T ss_pred -------Cccceecc--CCCccEEEEecccceEEEEccccce--eeeeeeccc-----------ccccceEECCccCeee
Confidence 99999999 8999999999999999999998874 555666666 8999999999999999
Q ss_pred cceeeccceEEEEeecccccceeeEEeecC------CCCCeeEEEeCCCCCEEEEE-c----CCeEEEEeCCCCCceeeE
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVYPHA------HDFNINSISNNSDCETFVSA-D----DLRINLWNLEISDQCFNI 255 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~-~----d~~i~lwd~~~~~~~~~~ 255 (432)
+.+. |+++++|+.. +..+.+.+ .+ ......-+.|+|||++|++. . -..+.|.+.+ +-..-.
T Consensus 188 Sqsd--Drtikvwrt~---dw~i~k~I-t~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~-tWk~~~- 259 (942)
T KOG0973|consen 188 SQSD--DRTLKVWRTS---DWGIEKSI-TKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG-TWKVDK- 259 (942)
T ss_pred eecC--CceEEEEEcc---cceeeEee-ccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC-Cceeee-
Confidence 9999 9999999977 45555554 22 23467789999999999987 2 2356666665 222222
Q ss_pred eecCCCCcCCCCcceEEEEEcCC--------C----Cc----EEEEEeCCCeEEEEEccccccccccceeecccccccCC
Q 014005 256 VDMKPSNMDDLTEVITSAEFHPI--------Y----CN----LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS 319 (432)
Q Consensus 256 ~~~~~~~~~~~~~~v~~~~~~p~--------~----~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~ 319 (432)
.+-+|.+++.+++|+|. | +. .+|+|+.|++|.||.....++.. .+..+.
T Consensus 260 ------~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~-vi~~lf-------- 324 (942)
T KOG0973|consen 260 ------DLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF-VIHNLF-------- 324 (942)
T ss_pred ------eeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh-hhhhhh--------
Confidence 24799999999999982 1 11 78999999999999986555421 122222
Q ss_pred ccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005 320 KSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 320 ~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~ 355 (432)
..+|.+++|+|||..|..++ ||+|.+..+
T Consensus 325 -------~~SI~DmsWspdG~~LfacS~DGtV~~i~F 354 (942)
T KOG0973|consen 325 -------NKSIVDMSWSPDGFSLFACSLDGTVALIHF 354 (942)
T ss_pred -------cCceeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence 35899999999999887765 499999998
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=7.5e-27 Score=198.99 Aligned_cols=286 Identities=15% Similarity=0.184 Sum_probs=217.1
Q ss_pred CCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (432)
Q Consensus 25 ~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~ 104 (432)
....-.|.+.|..+.|-++...|++|+.|..|++|+....+ +..+.++.|..
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-------------------------~~~~~tLaGs~--- 219 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-------------------------SELISTLAGSL--- 219 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-------------------------hhhhhhhhccC---
Confidence 33445678899999999998999999999999999988765 22445677776
Q ss_pred cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
+.|+++.| .+++..++.++.|+.+++|++...+.. ..+.+|. +.|.++.|......
T Consensus 220 ---------g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~--~TLsGHt-----------dkVt~ak~~~~~~~ 275 (459)
T KOG0288|consen 220 ---------GNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLR--HTLSGHT-----------DKVTAAKFKLSHSR 275 (459)
T ss_pred ---------CCcceeee--cCCCceEEeecCCCceeeeeccchhhh--hhhcccc-----------cceeeehhhccccc
Confidence 88999999 899999999999999999999887733 3344455 78889988887777
Q ss_pred eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (432)
+++|+. |.++++||+. ...|.+++ -..+.++.|+.+ ...+++| .|++|++||.+ ...+...+
T Consensus 276 vVsgs~--DRtiK~WDl~---k~~C~kt~--l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~R-s~~~~~sv------- 338 (459)
T KOG0288|consen 276 VVSGSA--DRTIKLWDLQ---KAYCSKTV--LPGSQCNDIVCS--ISDVISGHFDKKVRFWDIR-SADKTRSV------- 338 (459)
T ss_pred eeeccc--cchhhhhhhh---hhheeccc--cccccccceEec--ceeeeecccccceEEEecc-CCceeeEe-------
Confidence 888888 9999999999 67787775 234556666665 5568889 99999999999 55555544
Q ss_pred CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (432)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 343 (432)
+.+ +.|+++..++++ ..|.+++.|.++.+.|+++.+. ...+..- .++. ....+.+.|||++.|+|
T Consensus 339 ~~g-g~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI----~~~~sA~-------g~k~--asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 339 PLG-GRVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEI----RQTFSAE-------GFKC--ASDWTRVVFSPDGSYVA 403 (459)
T ss_pred ecC-cceeeEeeccCC-eEEeeecCCCceeeeecccccE----EEEeecc-------cccc--ccccceeEECCCCceee
Confidence 344 489999999999 8888889999999999998765 3444431 1111 23488999999999999
Q ss_pred EeeC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeee
Q 014005 344 SRDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSAL 403 (432)
Q Consensus 344 s~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~ 403 (432)
+|+. |.|+||++ ++.+.+..... ...+..+..+....++++.+.++.+.+|
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~~s~s---------~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLSLSTS---------NAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eccCCCcEEEEEccCceEEEEeccCCC---------CcceEEEEEcCCCchhhcccCCcceEec
Confidence 9854 99999999 55555554432 1123333333344467777777777777
No 79
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=1e-25 Score=194.59 Aligned_cols=271 Identities=14% Similarity=0.211 Sum_probs=199.6
Q ss_pred ccCCCcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 29 LQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
+.|.+.|+.+.+-|... ++|+++..+.+.|||......... ...+.++-..+.||+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~-----------------~~~~~~Pdl~L~gH~------ 177 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK-----------------ASGECRPDLRLKGHE------ 177 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc-----------------ccccCCCceEEEeec------
Confidence 67899999999999765 567788889999999876432100 000233445788998
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-----eeeeeecCCCCccccccccccccccccccCCCCC
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-----VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (432)
+.=++++|.+. ..-.+++++.|++|.+||+.... ......+..|. ..|.+++|++..
T Consensus 178 ------~eg~glsWn~~-~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~-----------~~VeDV~~h~~h 239 (422)
T KOG0264|consen 178 ------KEGYGLSWNRQ-QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE-----------DVVEDVAWHPLH 239 (422)
T ss_pred ------ccccccccccc-cceeEeeccCCCcEEEEeccccccCCccccceEEeecCC-----------cceehhhccccc
Confidence 65678999532 23378999999999999997543 22333445555 889999999876
Q ss_pred ccee-cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEeecC
Q 014005 183 AHGY-HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (432)
Q Consensus 183 ~~~~-~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~ 259 (432)
..+. +.+. |+.+.|||.+.. +.++.+.. .+|.+.++|++|+|- +..||+| .|++|.+||+|....++..+
T Consensus 240 ~~lF~sv~d--d~~L~iwD~R~~-~~~~~~~~-~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~--- 312 (422)
T KOG0264|consen 240 EDLFGSVGD--DGKLMIWDTRSN-TSKPSHSV-KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF--- 312 (422)
T ss_pred hhhheeecC--CCeEEEEEcCCC-CCCCcccc-cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec---
Confidence 6554 3444 899999999974 55666666 899999999999995 5566788 89999999999777766655
Q ss_pred CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccc-cCCccceeeeecceeEEEEcCC
Q 014005 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES-HGSKSFFTEIIASISDIKFAND 338 (432)
Q Consensus 260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~-~~~~~~~~~~~~~v~~~~~s~d 338 (432)
.+|...|.++.|+|....+||+++.|+++.+||+..-.. .+.-+.-... |...-.-.+|...|.++.|+|+
T Consensus 313 ----e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~----eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ 384 (422)
T KOG0264|consen 313 ----EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE----EQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPN 384 (422)
T ss_pred ----cCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccc----ccChhhhccCCcceeEEecCcccccccccCCCC
Confidence 999999999999999889999999999999999975322 1110110000 1111122456899999999999
Q ss_pred CCEEEE-e-eCCeEEEEec
Q 014005 339 GQHLLS-R-DYMNLKVFRY 355 (432)
Q Consensus 339 g~~l~s-~-~~~~i~iwd~ 355 (432)
..++++ . .|+.+.||++
T Consensus 385 ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 385 EPWTIASVAEDNILQIWQM 403 (422)
T ss_pred CCeEEEEecCCceEEEeec
Confidence 887765 3 5599999998
No 80
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=6.9e-27 Score=203.08 Aligned_cols=267 Identities=15% Similarity=0.172 Sum_probs=203.9
Q ss_pred cchhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccc
Q 014005 3 LNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMD 82 (432)
Q Consensus 3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 82 (432)
|+++-+-....|.+-. ..+..-.-..|..+|..++|+++|..+++++.|+.|++||.++++..
T Consensus 231 LS~gmD~~vklW~vy~--~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~--------------- 293 (503)
T KOG0282|consen 231 LSGGMDGLVKLWNVYD--DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL--------------- 293 (503)
T ss_pred EecCCCceEEEEEEec--CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEE---------------
Confidence 3444444555665442 11122233478999999999999999999999999999999998743
Q ss_pred ccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCC-CEEEEEeCCCeEEEEEccCcceeeeeecCCCCcc
Q 014005 83 FTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFV 161 (432)
Q Consensus 83 ~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 161 (432)
..+... ..++++.| +|++ +.|++|+.|+.|+.||++++++ +.++..|-
T Consensus 294 ------------~~f~~~-------------~~~~cvkf--~pd~~n~fl~G~sd~ki~~wDiRs~kv--vqeYd~hL-- 342 (503)
T KOG0282|consen 294 ------------SRFHLD-------------KVPTCVKF--HPDNQNIFLVGGSDKKIRQWDIRSGKV--VQEYDRHL-- 342 (503)
T ss_pred ------------EEEecC-------------CCceeeec--CCCCCcEEEEecCCCcEEEEeccchHH--HHHHHhhh--
Confidence 333221 57889999 7777 7899999999999999999983 33344444
Q ss_pred ccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe
Q 014005 162 SSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR 240 (432)
Q Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~ 240 (432)
+.|..+.|-+.+...++.+. ++.++||+.+. ...++.....+...+.++..+|++.+++.- .|+.
T Consensus 343 ---------g~i~~i~F~~~g~rFissSD--dks~riWe~~~---~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~ 408 (503)
T KOG0282|consen 343 ---------GAILDITFVDEGRRFISSSD--DKSVRIWENRI---PVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY 408 (503)
T ss_pred ---------hheeeeEEccCCceEeeecc--CccEEEEEcCC---CccchhhcchhhccCcceecCCCCCeehhhccCce
Confidence 78999999999999999988 99999999984 344333323344467789999999999987 8999
Q ss_pred EEEEeCCCCCceeeEeecCCCCcCCCC--cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccC
Q 014005 241 INLWNLEISDQCFNIVDMKPSNMDDLT--EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG 318 (432)
Q Consensus 241 i~lwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~ 318 (432)
|.++.+. ..-.+. +...+.+|. +.-..+.||||| .+|++|+.||.+.+||.++-++ +..++.|
T Consensus 409 i~ifs~~-~~~r~n----kkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt~kl----~~~lkah----- 473 (503)
T KOG0282|consen 409 IAIFSTV-PPFRLN----KKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKTTKL----VSKLKAH----- 473 (503)
T ss_pred EEEEecc-cccccC----HhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechhhhh----hhccccC-----
Confidence 9999876 221111 112346774 456788999999 9999999999999999999887 6888887
Q ss_pred CccceeeeecceeEEEEcCCC-CEEEEee-CCeEEEEe
Q 014005 319 SKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKVFR 354 (432)
Q Consensus 319 ~~~~~~~~~~~v~~~~~s~dg-~~l~s~~-~~~i~iwd 354 (432)
...+..+.|+|.. .-+|+|+ +|.|++||
T Consensus 474 --------~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 474 --------DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred --------CcceEEEEecCCCcceeEecccCceeEecC
Confidence 7899999999963 4566654 49999997
No 81
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.8e-25 Score=181.42 Aligned_cols=259 Identities=17% Similarity=0.184 Sum_probs=193.1
Q ss_pred CCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 32 VDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 32 ~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
.+.|.+|+||| ...++++||.|++||+|+++..... .. +....|+
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~------------------------~~-ka~~~~~--------- 72 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL------------------------VP-KAQQSHD--------- 72 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcc------------------------cc-hhhhccC---------
Confidence 67899999999 4556678999999999999874211 00 3345566
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc--ceecc
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA--HGYHL 188 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~ 188 (432)
++|.+++| +.||..+++|+.|+.+++||+.+++...+..+. ++|..+.|-+... .+++|
T Consensus 73 ---~PvL~v~W--sddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd--------------~pvkt~~wv~~~~~~cl~TG 133 (347)
T KOG0647|consen 73 ---GPVLDVCW--SDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHD--------------APVKTCHWVPGMNYQCLVTG 133 (347)
T ss_pred ---CCeEEEEE--ccCCceEEeeccCCceEEEEccCCCeeeeeecc--------------cceeEEEEecCCCcceeEec
Confidence 99999999 899999999999999999999999877665554 7889998876655 88999
Q ss_pred eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
+. |.++++||.+ ...++.++ ...++++++..- ...++++ .++.|.+|+++......+.. .....
T Consensus 134 SW--DKTlKfWD~R---~~~pv~t~--~LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~------~SpLk 198 (347)
T KOG0647|consen 134 SW--DKTLKFWDTR---SSNPVATL--QLPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRI------ESPLK 198 (347)
T ss_pred cc--ccceeecccC---CCCeeeee--eccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhh------cCccc
Confidence 99 9999999999 66676665 456677777653 4577888 99999999998333222221 12234
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-ee
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RD 346 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~ 346 (432)
-.+++++..++. ...|.|+-.|++.|..+..+... .-..|+.|....... +..-.|++++|+|.-..|++ |+
T Consensus 199 ~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~--~nFtFkCHR~~~~~~----~~VYaVNsi~FhP~hgtlvTaGs 271 (347)
T KOG0647|consen 199 WQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPK--DNFTFKCHRSTNSVN----DDVYAVNSIAFHPVHGTLVTAGS 271 (347)
T ss_pred ceeeEEEEEecC-CceEeeeecceEEEEecCCCCcc--CceeEEEeccCCCCC----CceEEecceEeecccceEEEecC
Confidence 468999999998 77799999999999999876331 146777773211110 01347899999998666766 78
Q ss_pred CCeEEEEec---CcceeEeecc
Q 014005 347 YMNLKVFRY---EPVMTLSFCG 365 (432)
Q Consensus 347 ~~~i~iwd~---~~~~~~~~~~ 365 (432)
||+..+||- ..+++.+.+.
T Consensus 272 DGtf~FWDkdar~kLk~s~~~~ 293 (347)
T KOG0647|consen 272 DGTFSFWDKDARTKLKTSETHP 293 (347)
T ss_pred CceEEEecchhhhhhhccCcCC
Confidence 899999999 4445544443
No 82
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.3e-24 Score=169.89 Aligned_cols=250 Identities=10% Similarity=0.155 Sum_probs=189.0
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
.|.+.|+|.+|+|+|++||+|++|.+|++.-.+..... +.+ .-.+|.-|.
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~---------~~g-------------~dle~nmhd-------- 136 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCN---------ATG-------------HDLEFNMHD-------- 136 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEeccccccc---------ccC-------------cceeeeecC--------
Confidence 47889999999999999999999999999877654321 000 012344455
Q ss_pred hhhhcceeEEEEEEcC--CCCEEEEEe-CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 110 LEIEEKINRVRWCAAP--NGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~--~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
+.|..++|+..| .+..|++++ .|-.|++=|...++ .+..+.+|. +-|.. .++.++.+++
T Consensus 137 ----gtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~--~~~a~sght-----------ghila-lyswn~~m~~ 198 (350)
T KOG0641|consen 137 ----GTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ--GFHALSGHT-----------GHILA-LYSWNGAMFA 198 (350)
T ss_pred ----CceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC--cceeecCCc-----------ccEEE-EEEecCcEEE
Confidence 899999996433 355677764 46677777777766 444444444 44433 3567788899
Q ss_pred cceeeccceEEEEeecccccceeeEEeec-CC-----CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecC
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVYPH-AH-----DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~-~~-----~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~ 259 (432)
+|+. |.+|++||++ ...|+.++.. -| .+.|.++++.|.|+.|++| .|..+.+||++ .++.++.+
T Consensus 199 sgsq--dktirfwdlr---v~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir-g~r~iq~f--- 269 (350)
T KOG0641|consen 199 SGSQ--DKTIRFWDLR---VNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR-GGRMIQRF--- 269 (350)
T ss_pred ccCC--CceEEEEeee---ccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee-CCceeeee---
Confidence 9998 9999999999 6677776621 12 2578999999999999999 99999999999 78888866
Q ss_pred CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccc-cceeecccccccCCccceeeeecceeEEEEcCC
Q 014005 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-SARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (432)
Q Consensus 260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d 338 (432)
..|+..|+++.|+|.. .++++++.|..|++-|++. .+..+ .+.....| ...+..+.|+|.
T Consensus 270 ----~phsadir~vrfsp~a-~yllt~syd~~ikltdlqg-dla~el~~~vv~eh-------------kdk~i~~rwh~~ 330 (350)
T KOG0641|consen 270 ----HPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQG-DLAHELPIMVVAEH-------------KDKAIQCRWHPQ 330 (350)
T ss_pred ----CCCccceeEEEeCCCc-eEEEEecccceEEEeeccc-chhhcCceEEEEec-------------cCceEEEEecCc
Confidence 8999999999999998 9999999999999999873 32111 13444454 788889999998
Q ss_pred CCEEEE-eeCCeEEEEec
Q 014005 339 GQHLLS-RDYMNLKVFRY 355 (432)
Q Consensus 339 g~~l~s-~~~~~i~iwd~ 355 (432)
.--+++ +.|.++.+|-+
T Consensus 331 d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 331 DFSFISSSADKTATLWAL 348 (350)
T ss_pred cceeeeccCcceEEEecc
Confidence 765655 45699999965
No 83
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=3.9e-26 Score=194.66 Aligned_cols=261 Identities=15% Similarity=0.206 Sum_probs=194.6
Q ss_pred hccccchhhhhhhhcCC--CCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc
Q 014005 7 EASASLEWKCSQAFGER--NPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT 84 (432)
Q Consensus 7 ~~~~~~~w~~~~~~~~~--~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (432)
.+.....|+.. +++ .....-+..+.|++++|.++++++++++.|+.+++|+++..+..
T Consensus 195 ~Dr~Ik~W~v~---~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~----------------- 254 (459)
T KOG0288|consen 195 SDRIIKLWNVL---GEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR----------------- 254 (459)
T ss_pred hhhhhhhhhcc---cchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhh-----------------
Confidence 33445556544 222 12233345678999999999999999999999999999887643
Q ss_pred ccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccc
Q 014005 85 STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE 164 (432)
Q Consensus 85 ~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.++.||+ +.|+++.| ......+++|+.|.+|++||+....+.+..-.
T Consensus 255 ----------~TLsGHt------------dkVt~ak~--~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~--------- 301 (459)
T KOG0288|consen 255 ----------HTLSGHT------------DKVTAAKF--KLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP--------- 301 (459)
T ss_pred ----------hhhcccc------------cceeeehh--hccccceeeccccchhhhhhhhhhheeccccc---------
Confidence 7899999 99999999 55555599999999999999987654332111
Q ss_pred cccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEE
Q 014005 165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINL 243 (432)
Q Consensus 165 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~l 243 (432)
.+.+.++..+ ...+.+|.+ |+.|++||.+ ...+.... .. .+.|+++..++++..+++. .|.++.+
T Consensus 302 -----~S~cnDI~~~--~~~~~SgH~--DkkvRfwD~R---s~~~~~sv-~~-gg~vtSl~ls~~g~~lLsssRDdtl~v 367 (459)
T KOG0288|consen 302 -----GSQCNDIVCS--ISDVISGHF--DKKVRFWDIR---SADKTRSV-PL-GGRVTSLDLSMDGLELLSSSRDDTLKV 367 (459)
T ss_pred -----cccccceEec--ceeeeeccc--ccceEEEecc---CCceeeEe-ec-CcceeeEeeccCCeEEeeecCCCceee
Confidence 1233333333 445566666 9999999998 67777776 33 4499999999999999988 9999999
Q ss_pred EeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccce
Q 014005 244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (432)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~ 323 (432)
.|++ +......+. ...+. -....+.+.|||++ .++|+|+.||.|+||++.+++. .+.+... .
T Consensus 368 iDlR-t~eI~~~~s--A~g~k-~asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgKl----E~~l~~s-~-------- 429 (459)
T KOG0288|consen 368 IDLR-TKEIRQTFS--AEGFK-CASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFTGKL----EKVLSLS-T-------- 429 (459)
T ss_pred eecc-cccEEEEee--ccccc-cccccceeEECCCC-ceeeeccCCCcEEEEEccCceE----EEEeccC-C--------
Confidence 9999 555555441 11111 12348899999999 9999999999999999999886 4555441 0
Q ss_pred eeeecceeEEEEcCCCCEEEEeeC-CeEEEEe
Q 014005 324 TEIIASISDIKFANDGQHLLSRDY-MNLKVFR 354 (432)
Q Consensus 324 ~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd 354 (432)
-...|+++.|+|.|.+|++++. +.+.+|.
T Consensus 430 --s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 430 --SNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred --CCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 0237999999999999999866 8899883
No 84
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.1e-24 Score=179.27 Aligned_cols=281 Identities=14% Similarity=0.211 Sum_probs=198.1
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
-.|.+-|+|+.|++-|+.+|+|+.|++++|||.+.... ++.+....+.|.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-----------------------~W~~Ts~Wrah~------- 59 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-----------------------TWSCTSSWRAHD------- 59 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-----------------------ceEEeeeEEecC-------
Confidence 36789999999999999999999999999999755432 466777889999
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccC-------cceeeeeecCCCCccccccccccccccccccCCCC
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-------QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 181 (432)
+.|..+.|.+..-|+.+|+++.|+++.||.=.. .+..+...+.... +.|.++.|.|.
T Consensus 60 -----~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsr-----------ssV~DV~FaP~ 123 (361)
T KOG2445|consen 60 -----GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSR-----------SSVTDVKFAPK 123 (361)
T ss_pred -----CcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCC-----------cceeEEEecch
Confidence 999999998655699999999999999997521 1233444444444 78999999987
Q ss_pred Cc--ceecceeeccceEEEEeeccccc---ceeeEEe------ecCCCCCeeEEEeCCC---CCEEEEEcCC------eE
Q 014005 182 FA--HGYHLEWTENMATKIANVGNSVH---ARCQKVY------PHAHDFNINSISNNSD---CETFVSADDL------RI 241 (432)
Q Consensus 182 ~~--~~~~~~~~~~~~v~i~d~~~~~~---~~~~~~~------~~~~~~~i~~~~~~~~---~~~l~~~~d~------~i 241 (432)
.. .+++.+. ||.++||+.-.... ......+ +..+.....|+.|+|. .+++|+|.|. .+
T Consensus 124 hlGLklA~~~a--DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~ 201 (361)
T KOG2445|consen 124 HLGLKLAAASA--DGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKV 201 (361)
T ss_pred hcceEEEEecc--CcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccce
Confidence 54 4455554 99999998653211 1111111 1235667889999974 5678888443 88
Q ss_pred EEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCC---cEEEEEeCCCeEEEEEccccccccccceeeccccc---
Q 014005 242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC---NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE--- 315 (432)
Q Consensus 242 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~--- 315 (432)
.||.....+..... ..++.+|..+|+.++|.|+-. .+||+++.|| |+||.++....... ...... +.
T Consensus 202 ~Iye~~e~~rKw~k----va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~-~ee~~~-~~~~~ 274 (361)
T KOG2445|consen 202 KIYEYNENGRKWLK----VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIE-EEEVLA-PDLMT 274 (361)
T ss_pred EEEEecCCcceeee----ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhh-hhcccC-CCCcc
Confidence 89988744433322 135579999999999999642 6899999999 99999984221000 000000 00
Q ss_pred --ccCCccceeeeecceeEEEEcCCCCEEEE-eeCCeEEEEec------CcceeEeec
Q 014005 316 --SHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNLKVFRY------EPVMTLSFC 364 (432)
Q Consensus 316 --~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~~~i~iwd~------~~~~~~~~~ 364 (432)
.....+.+.+|.+.|+.+.|+-.|..|++ |+||+||+|.. ++...++..
T Consensus 275 ~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 275 DLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred ccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEecc
Confidence 00011334556899999999999999998 56699999988 455555443
No 85
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.3e-26 Score=204.85 Aligned_cols=328 Identities=14% Similarity=0.162 Sum_probs=242.0
Q ss_pred chhhccccchhhhhhhhc---CCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcc
Q 014005 4 NREEASASLEWKCSQAFG---ERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQ 80 (432)
Q Consensus 4 ~~~~~~~~~~w~~~~~~~---~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 80 (432)
.++-+..-..|++.|..+ +........|++.|+.+....+|+.|+++|.|-+|++|+...+..
T Consensus 42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~-------------- 107 (735)
T KOG0308|consen 42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT-------------- 107 (735)
T ss_pred ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc--------------
Confidence 445556678899998766 344667788999999999999999999999999999999877531
Q ss_pred ccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCc
Q 014005 81 MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF 160 (432)
Q Consensus 81 ~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 160 (432)
-+..++..|. +.|.|+++. .++..++++|+.|+.|.+||++++....+..++.-+
T Consensus 108 -----------~c~stir~H~------------DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t- 162 (735)
T KOG0308|consen 108 -----------FCMSTIRTHK------------DYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT- 162 (735)
T ss_pred -----------hhHhhhhccc------------chheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccc-
Confidence 2556788898 889999984 467889999999999999999987432222221111
Q ss_pred cccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCC
Q 014005 161 VSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL 239 (432)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~ 239 (432)
++++. .-...++++++.++.+..++.|+. .+.+++||.+ +.+.+..+ .+|+..|.++..++||..++++ .||
T Consensus 163 ~~sl~-sG~k~siYSLA~N~t~t~ivsGgt--ek~lr~wDpr---t~~kimkL-rGHTdNVr~ll~~dDGt~~ls~sSDg 235 (735)
T KOG0308|consen 163 VNSLG-SGPKDSIYSLAMNQTGTIIVSGGT--EKDLRLWDPR---TCKKIMKL-RGHTDNVRVLLVNDDGTRLLSASSDG 235 (735)
T ss_pred cccCC-CCCccceeeeecCCcceEEEecCc--ccceEEeccc---cccceeee-eccccceEEEEEcCCCCeEeecCCCc
Confidence 11110 023478899999999999999998 9999999999 66667777 7999999999999999999999 999
Q ss_pred eEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCC
Q 014005 240 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS 319 (432)
Q Consensus 240 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~ 319 (432)
+|++||+. ..+|+.++ ..|...|+++..+|+- ..+.+|+.||.|..=|+++...+ ...++.
T Consensus 236 tIrlWdLg-qQrCl~T~-------~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~---tlick~------- 296 (735)
T KOG0308|consen 236 TIRLWDLG-QQRCLATY-------IVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKS---TLICKE------- 296 (735)
T ss_pred eEEeeecc-ccceeeeE-------EeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhh---eEeecC-------
Confidence 99999999 67788876 8899999999999998 99999999999999999985432 344444
Q ss_pred ccceeeeecceeEEEEcCCCCE-EEEeeCCeEEEEecCcceeEeecceeeeehhhhhcccccccccceeeE---------
Q 014005 320 KSFFTEIIASISDIKFANDGQH-LLSRDYMNLKVFRYEPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVI--------- 389 (432)
Q Consensus 320 ~~~~~~~~~~v~~~~~s~dg~~-l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 389 (432)
..+|..+..+.+..- -++..++.|+-|..++...+...+.+....... ....|.........
T Consensus 297 -------daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~-~~~~~~~~~tp~~vi~Gg~ai~k 368 (735)
T KOG0308|consen 297 -------DAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDS-NNHSCDLTNTPDSVIPGGAAIKK 368 (735)
T ss_pred -------CCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccC-CCccccccCCCceeccCchhhhh
Confidence 457777776643222 333455888889885554444443311111111 12222221111100
Q ss_pred --------EEEeecccceeeeec
Q 014005 390 --------YIITTLYLINLSALS 404 (432)
Q Consensus 390 --------~~~~g~~~~~i~~~~ 404 (432)
.|+|-...|++.+||
T Consensus 369 ~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 369 HAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred hhhhcCcceEeeecCCCCEEEEE
Confidence 688888899999999
No 86
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.9e-25 Score=200.50 Aligned_cols=271 Identities=18% Similarity=0.221 Sum_probs=210.0
Q ss_pred EEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhc
Q 014005 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (432)
Q Consensus 35 V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (432)
..-++|+ ..+.||+|. ...|.+|+..++... .....+. .
T Consensus 180 ~nlldWs-s~n~laVal-g~~vylW~~~s~~v~---------------------------~l~~~~~------------~ 218 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVAL-GQSVYLWSASSGSVT---------------------------ELCSFGE------------E 218 (484)
T ss_pred hhHhhcc-cCCeEEEEe-cceEEEEecCCCceE---------------------------EeEecCC------------C
Confidence 3445677 344677664 458999998887632 1222224 8
Q ss_pred ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCC-CCccccccccccccccccccCCCCCcceecceeecc
Q 014005 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH-FPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
.|+++.| +++|.+|++|..+|.|.|||....+ .+..+.. |. ..|-+++|. ...+.+|+. +
T Consensus 219 ~vtSv~w--s~~G~~LavG~~~g~v~iwD~~~~k--~~~~~~~~h~-----------~rvg~laW~--~~~lssGsr--~ 279 (484)
T KOG0305|consen 219 LVTSVKW--SPDGSHLAVGTSDGTVQIWDVKEQK--KTRTLRGSHA-----------SRVGSLAWN--SSVLSSGSR--D 279 (484)
T ss_pred ceEEEEE--CCCCCEEEEeecCCeEEEEehhhcc--ccccccCCcC-----------ceeEEEecc--CceEEEecC--C
Confidence 8999999 8999999999999999999998765 3333443 44 778888888 667777888 9
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (432)
+.+.++|++.... ....+ .+|...|..+.|++++.++|+| .|+.+.|||.. .......+ ..|.+.|..
T Consensus 280 ~~I~~~dvR~~~~--~~~~~-~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~-~~~p~~~~-------~~H~aAVKA 348 (484)
T KOG0305|consen 280 GKILNHDVRISQH--VVSTL-QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL-SPEPKFTF-------TEHTAAVKA 348 (484)
T ss_pred CcEEEEEEecchh--hhhhh-hcccceeeeeEECCCCCeeccCCCccceEeccCC-CccccEEE-------eccceeeeE
Confidence 9999999984321 11225 7899999999999999999999 99999999996 44444444 899999999
Q ss_pred EEEcCCCCcEEEEEe--CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE--e-eC
Q 014005 273 AEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS--R-DY 347 (432)
Q Consensus 273 ~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s--~-~~ 347 (432)
++|+|-...+||+|+ .|+.|++||..++.. +..... ...|..+.|++..+-|++ | ++
T Consensus 349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~----i~~vdt--------------gsQVcsL~Wsk~~kEi~sthG~s~ 410 (484)
T KOG0305|consen 349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGAR----IDSVDT--------------GSQVCSLIWSKKYKELLSTHGYSE 410 (484)
T ss_pred eeeCCCccCceEEcCCCcccEEEEEEcCCCcE----eccccc--------------CCceeeEEEcCCCCEEEEecCCCC
Confidence 999998878999976 899999999999886 455555 489999999999876666 4 33
Q ss_pred CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 348 MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 348 ~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
+.|.||+. +++..+..|.. ++..+..+.....|++|+.|.++++|+-
T Consensus 411 n~i~lw~~ps~~~~~~l~gH~~-----------RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 411 NQITLWKYPSMKLVAELLGHTS-----------RVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred CcEEEEeccccceeeeecCCcc-----------eeEEEEECCCCCEEEEecccCcEEeccc
Confidence 99999999 67777777764 3333333444557999999999999993
No 87
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.6e-25 Score=207.44 Aligned_cols=254 Identities=15% Similarity=0.210 Sum_probs=181.4
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeee------------------------------cCCCCcccc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKE------------------------------MDHFPFVSS 163 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------------------------~~~~~~~~~ 163 (432)
+.|+++.| ++||+|||+|+.|+.|+||.+...+...... .......++
T Consensus 268 gaIw~mKF--S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s 345 (712)
T KOG0283|consen 268 GAIWAMKF--SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS 345 (712)
T ss_pred CcEEEEEe--CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence 99999999 9999999999999999999987611000000 000000000
Q ss_pred -----------c-----cc-cccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEe
Q 014005 164 -----------E-----NT-LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN 226 (432)
Q Consensus 164 -----------~-----~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 226 (432)
+ .. .-..+.|.++.|+.+ .+|++.+. |.+|++|++. ...|++.| .|.+.|+|++|
T Consensus 346 ~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSM--DKTVRLWh~~---~~~CL~~F--~HndfVTcVaF 417 (712)
T KOG0283|consen 346 PCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSM--DKTVRLWHPG---RKECLKVF--SHNDFVTCVAF 417 (712)
T ss_pred ccccCCCccccccccchhhhhccchhheecccccC-CeeEeccc--cccEEeecCC---CcceeeEE--ecCCeeEEEEe
Confidence 0 00 002466777777665 45666666 9999999999 88999998 79999999999
Q ss_pred CC-CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccc
Q 014005 227 NS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD 304 (432)
Q Consensus 227 ~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~ 304 (432)
+| |.+++++| -|+.|+||++. ..+... + ..-..-|++++|.|+| +..+.|+.+|.+++|+++..+.
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~-d~~Vv~-W-------~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~-- 485 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSIS-DKKVVD-W-------NDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKL-- 485 (712)
T ss_pred cccCCCcEeecccccceEEeecC-cCeeEe-e-------hhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeE--
Confidence 99 78899999 99999999998 444333 2 3444779999999999 9999999999999999986554
Q ss_pred ccceeecccccccCCccceeeeecceeEEEEcCCC--CEEEEeeCCeEEEEec---CcceeEeecceeeeehhhhhcccc
Q 014005 305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRF 379 (432)
Q Consensus 305 ~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg--~~l~s~~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~ 379 (432)
...+.-+ ....+ . .. ...|+++.|.|.. +.|+|..|..|||+|. .++..|+.... ..+..
T Consensus 486 --~~~~~I~--~~~~K-k-~~-~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n--------~~SQ~ 550 (712)
T KOG0283|consen 486 --VSDFHIR--LHNKK-K-KQ-GKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN--------TSSQI 550 (712)
T ss_pred --EEeeeEe--eccCc-c-cc-CceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc--------CCcce
Confidence 2222211 00000 0 00 1379999999853 4889998999999999 67777776543 22233
Q ss_pred cccccceeeEEEEeecccceeeeecc
Q 014005 380 MSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 380 ~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
...+ .....+||+|+.|..|++|+.
T Consensus 551 ~Asf-s~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 551 SASF-SSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred eeeE-ccCCCEEEEeecCceEEEEeC
Confidence 3222 225568999999999999994
No 88
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.6e-24 Score=203.61 Aligned_cols=238 Identities=13% Similarity=0.170 Sum_probs=173.4
Q ss_pred ccccCCCcEEEEEEcCC-CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 27 EELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 27 ~~~~h~~~V~~~~fsp~-g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
....|.+.|++++|+|+ +++||+|+.|++|+|||+.++.... . ........+.+|.
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~------~-------------~i~~p~~~L~gH~---- 125 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV------K-------------EIKDPQCILKGHK---- 125 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc------c-------------ccccceEEeecCC----
Confidence 34578999999999997 7899999999999999997642100 0 0012334678898
Q ss_pred ccchhhhhcceeEEEEEEcCCCCE-EEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
..|.+++| +|++.. +++++.|++|++||+.+++...... +. ..|.+++|++++..
T Consensus 126 --------~~V~sVaf--~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~---~~-----------~~V~SlswspdG~l 181 (568)
T PTZ00420 126 --------KKISIIDW--NPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN---MP-----------KKLSSLKWNIKGNL 181 (568)
T ss_pred --------CcEEEEEE--CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe---cC-----------CcEEEEEECCCCCE
Confidence 99999999 888875 5788999999999999876332221 12 56899999999999
Q ss_pred eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEE-----EeCCCCCEEEEE-cC----CeEEEEeCCCCCceee
Q 014005 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSI-----SNNSDCETFVSA-DD----LRINLWNLEISDQCFN 254 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~l~~~-~d----~~i~lwd~~~~~~~~~ 254 (432)
+++++. |+.+++||++ ++.++..+ .+|.+.+.+. .|++++.+++++ .| ++|++||++....++.
T Consensus 182 Lat~s~--D~~IrIwD~R---sg~~i~tl-~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~ 255 (568)
T PTZ00420 182 LSGTCV--GKHMHIIDPR---KQEIASSF-HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALV 255 (568)
T ss_pred EEEEec--CCEEEEEECC---CCcEEEEE-ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceE
Confidence 998887 9999999999 66777777 7887765433 345888888875 44 4799999995555555
Q ss_pred EeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEE
Q 014005 255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 334 (432)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~ 334 (432)
.+ .+..+.+.+......+++ .++++|+.|+.|++|++..+.. ..+.... +..++.+++
T Consensus 256 ~~-----~ld~~~~~L~p~~D~~tg-~l~lsGkGD~tIr~~e~~~~~~-----~~l~~~~-----------s~~p~~g~~ 313 (568)
T PTZ00420 256 TM-----SIDNASAPLIPHYDESTG-LIYLIGKGDGNCRYYQHSLGSI-----RKVNEYK-----------SCSPFRSFG 313 (568)
T ss_pred EE-----EecCCccceEEeeeCCCC-CEEEEEECCCeEEEEEccCCcE-----Eeecccc-----------cCCCccceE
Confidence 44 123344444444445556 8999999999999999987643 2232210 146788899
Q ss_pred EcCCC
Q 014005 335 FANDG 339 (432)
Q Consensus 335 ~s~dg 339 (432)
|.|+.
T Consensus 314 f~Pkr 318 (568)
T PTZ00420 314 FLPKQ 318 (568)
T ss_pred Ecccc
Confidence 99974
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5.4e-25 Score=190.27 Aligned_cols=266 Identities=11% Similarity=0.129 Sum_probs=206.0
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCC-ccccchhhhccccccccccCCcceeeee-ecCCccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPN-QHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDY 106 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~~ 106 (432)
..|.-+|.|++++|++++.++++.+++|.=|++.+++.... .+.. ..+..+.. ....- ++|.
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-ev~k~~~~----------~~k~~r~~h~----- 202 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-EVLKSHGN----------PLKESRKGHV----- 202 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc-hhhhhccC----------CCCccccccc-----
Confidence 36788999999999999999999999999999998874311 0100 00111111 11111 3677
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
+.+.+++. ++||++|++|+.|..|.||+..+.+ .+..+..|. +.|.+++|-.....++
T Consensus 203 -------keil~~av--S~Dgkylatgg~d~~v~Iw~~~t~e--hv~~~~ghr-----------~~V~~L~fr~gt~~ly 260 (479)
T KOG0299|consen 203 -------KEILTLAV--SSDGKYLATGGRDRHVQIWDCDTLE--HVKVFKGHR-----------GAVSSLAFRKGTSELY 260 (479)
T ss_pred -------ceeEEEEE--cCCCcEEEecCCCceEEEecCcccc--hhhcccccc-----------cceeeeeeecCcccee
Confidence 88999999 9999999999999999999999877 333455666 8899999999999999
Q ss_pred cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
+++. |..+++|+++ ....+.++ -+|.+.|.++....-++.+.+| .|+++++|++. .....++ .+
T Consensus 261 s~s~--Drsvkvw~~~---~~s~vetl-yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~--eesqlif-------rg 325 (479)
T KOG0299|consen 261 SASA--DRSVKVWSID---QLSYVETL-YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP--EESQLIF-------RG 325 (479)
T ss_pred eeec--CCceEEEehh---HhHHHHHH-hCCccceeeechhcccceEEeccccceeEEEecc--ccceeee-------eC
Confidence 9998 9999999998 55666666 7999999999999889888888 99999999997 3333444 78
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceee-cccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
+.+.+-+++|=.+ ..|++|+.+|.|.+|++.+.++. .+. ..|...+.... ..+..+|++++..|...++|+
T Consensus 326 ~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkpl----f~~~~AHgv~~~~~~--~~~~~Witsla~i~~sdL~as 397 (479)
T KOG0299|consen 326 GEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPL----FTSRLAHGVIPELDP--VNGNFWITSLAVIPGSDLLAS 397 (479)
T ss_pred CCCCeeeEEEecc--cceeeccCCceEEEeeecccCce----eEeeccccccCCccc--cccccceeeeEecccCceEEe
Confidence 8889999999866 57999999999999999976652 322 23432222110 011259999999999999999
Q ss_pred eeC-CeEEEEec
Q 014005 345 RDY-MNLKVFRY 355 (432)
Q Consensus 345 ~~~-~~i~iwd~ 355 (432)
|+- |+|++|.+
T Consensus 398 GS~~G~vrLW~i 409 (479)
T KOG0299|consen 398 GSWSGCVRLWKI 409 (479)
T ss_pred cCCCCceEEEEe
Confidence 865 99999999
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=3.5e-25 Score=207.44 Aligned_cols=248 Identities=17% Similarity=0.288 Sum_probs=204.9
Q ss_pred chhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCc
Q 014005 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY 91 (432)
Q Consensus 12 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 91 (432)
..|+..+.+. -.....+|.+.|++++|..-+.+|++|+.|.++++||..+++
T Consensus 231 ~~~~~~~~~~--i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-------------------------- 282 (537)
T KOG0274|consen 231 HLWDLNNGYL--ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-------------------------- 282 (537)
T ss_pred EEeecccceE--EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc--------------------------
Confidence 3555554322 122356899999999998878899999999999999988876
Q ss_pred ceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccc
Q 014005 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (432)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (432)
+...+.+|+ ..|.++.. ...++++|+.|.+|++|++.++....+..- |. +
T Consensus 283 -C~~~l~gh~------------stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~--h~-----------~ 332 (537)
T KOG0274|consen 283 -CTHSLQGHT------------SSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRG--HT-----------G 332 (537)
T ss_pred -EEEEecCCC------------ceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEecc--cc-----------c
Confidence 668999999 99999987 355788889999999999998885555442 44 7
Q ss_pred ccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC
Q 014005 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD 250 (432)
Q Consensus 172 ~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~ 250 (432)
.|.++..+ +..+++|+. |+.|++||+. ..+|++.+ .+|...|.++.+.+. ..+++| .|++|++||++ ..
T Consensus 333 ~V~~v~~~--~~~lvsgs~--d~~v~VW~~~---~~~cl~sl-~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~-~~ 402 (537)
T KOG0274|consen 333 PVNCVQLD--EPLLVSGSY--DGTVKVWDPR---TGKCLKSL-SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLR-TK 402 (537)
T ss_pred cEEEEEec--CCEEEEEec--CceEEEEEhh---hceeeeee-cCCcceEEEEEecCc-ceEEeeeeccceEeecCC-ch
Confidence 89999888 889999999 9999999999 89999999 899999999988776 788888 89999999999 55
Q ss_pred -ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc-cccccCCccceeeeec
Q 014005 251 -QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD-AAESHGSKSFFTEIIA 328 (432)
Q Consensus 251 -~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~ 328 (432)
+++.++ .+|.+-+..+.+. + ++|++++.|++|++||..+++. ++.+++ | ..
T Consensus 403 ~~c~~tl-------~~h~~~v~~l~~~--~-~~Lvs~~aD~~Ik~WD~~~~~~----~~~~~~~~-------------~~ 455 (537)
T KOG0274|consen 403 RKCIHTL-------QGHTSLVSSLLLR--D-NFLVSSSADGTIKLWDAEEGEC----LRTLEGRH-------------VG 455 (537)
T ss_pred hhhhhhh-------cCCcccccccccc--c-ceeEeccccccEEEeecccCce----eeeeccCC-------------cc
Confidence 777765 8898888766664 4 7899999999999999998886 677777 3 57
Q ss_pred ceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 329 SISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 329 ~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
.|..+++. +...|+++.++.+++||+
T Consensus 456 ~v~~l~~~-~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 456 GVSALALG-KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred cEEEeecC-cceEEEEecCCeeEEEec
Confidence 88888877 444555567799999999
No 91
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=8e-25 Score=205.02 Aligned_cols=269 Identities=15% Similarity=0.183 Sum_probs=212.8
Q ss_pred CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
+...+.|..|. ..++++++.|++|++|+..++... ...+.||.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i--------------------------~~~l~GH~--------- 249 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLI--------------------------LTRLVGHF--------- 249 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEE--------------------------EeeccCCC---------
Confidence 46688999998 567999999999999999887532 24499999
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
+.|.++++ ..-+.++++|+.|.++++||..++++..... .|. +.+.++...+ ..++.|+.
T Consensus 250 ---g~V~~l~~--~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~--gh~-----------stv~~~~~~~--~~~~sgs~ 309 (537)
T KOG0274|consen 250 ---GGVWGLAF--PSGGDKLVSGSTDKTERVWDCSTGECTHSLQ--GHT-----------SSVRCLTIDP--FLLVSGSR 309 (537)
T ss_pred ---CCceeEEE--ecCCCEEEEEecCCcEEeEecCCCcEEEEec--CCC-----------ceEEEEEccC--ceEeeccC
Confidence 99999999 3457899999999999999999999665533 444 4555554433 34444667
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
|.+|++|++. .+++++++ .+|.+.|+++..+ +.++++| .|++|++||+. +.++++.+ .+|..+
T Consensus 310 --D~tVkVW~v~---n~~~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-~~~cl~sl-------~gH~~~ 373 (537)
T KOG0274|consen 310 --DNTVKVWDVT---NGACLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-TGKCLKSL-------SGHTGR 373 (537)
T ss_pred --CceEEEEecc---CcceEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhh-hceeeeee-------cCCcce
Confidence 9999999999 88999998 6799999999997 7789999 99999999999 88999877 899999
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCC
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYM 348 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~ 348 (432)
|.++.+.+. ..+++|+.|+.|++||+++...| +..+.+| ..-+..+.+ .+++|+++ .|+
T Consensus 374 V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c---~~tl~~h-------------~~~v~~l~~--~~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 374 VYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKC---IHTLQGH-------------TSLVSSLLL--RDNFLVSSSADG 433 (537)
T ss_pred EEEEEecCc--ceEEeeeeccceEeecCCchhhh---hhhhcCC-------------ccccccccc--ccceeEeccccc
Confidence 999988875 67999999999999999987333 7888887 566655544 47789987 459
Q ss_pred eEEEEec---CcceeEeec-ceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 349 NLKVFRY---EPVMTLSFC-GIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 349 ~i~iwd~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
+|++||. ++++++..+ .. .+..+... ...+++++.++++.+|+.
T Consensus 434 ~Ik~WD~~~~~~~~~~~~~~~~-----------~v~~l~~~--~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTLEGRHVG-----------GVSALALG--KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred cEEEeecccCceeeeeccCCcc-----------cEEEeecC--cceEEEEecCCeeEEEec
Confidence 9999999 777777763 11 11111111 124788889999999993
No 92
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=2.2e-24 Score=176.44 Aligned_cols=228 Identities=15% Similarity=0.254 Sum_probs=176.0
Q ss_pred ccCCCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 29 ~~h~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
-.|.+.|+++.+.+ .|+|+++|+.||.|.+||+++.... +...+-.....+ .-...-.+|.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~-----e~s~li~k~~c~-------v~~~h~~~Hk------ 101 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY-----EASGLIAKHKCI-------VAKQHENGHK------ 101 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccch-----hhccceeheeee-------ccccCCccce------
Confidence 35889999999988 6899999999999999999875411 000011100000 0011234566
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC---cc
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF---AH 184 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~ 184 (432)
..|.++.|.|. |.-+|.+++.|.++++||..+-+......+. +.|++-+++|-. .+
T Consensus 102 ------y~iss~~WyP~-DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me--------------~~VYshamSp~a~sHcL 160 (397)
T KOG4283|consen 102 ------YAISSAIWYPI-DTGMFTSSSFDHTLKVWDTNTLQEAVDFKME--------------GKVYSHAMSPMAMSHCL 160 (397)
T ss_pred ------eeeeeeEEeee-cCceeecccccceEEEeecccceeeEEeecC--------------ceeehhhcChhhhcceE
Confidence 88999999985 4448999999999999999887754444433 678888888753 46
Q ss_pred eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEE-EE-cCCeEEEEeCCCCCceeeEeecCC--
Q 014005 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKP-- 260 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~-~d~~i~lwd~~~~~~~~~~~~~~~-- 260 (432)
++.|.. +-.|++.|+. .+.+.+++ .+|.+.|.++.|+|...+++ +| .||.|++||++....++..++...
T Consensus 161 iA~gtr--~~~VrLCDi~---SGs~sH~L-sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k 234 (397)
T KOG4283|consen 161 IAAGTR--DVQVRLCDIA---SGSFSHTL-SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTK 234 (397)
T ss_pred EEEecC--CCcEEEEecc---CCcceeee-ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCc
Confidence 666776 8899999999 88999999 99999999999999888755 67 899999999997667887775422
Q ss_pred --C---CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 261 --S---NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 261 --~---~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
. .-..|.+.|++++|..++ .++++++.|.++++|++.+|+.
T Consensus 235 ~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 235 RPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred cCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCcc
Confidence 1 235788999999999999 9999999999999999998874
No 93
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=4.5e-25 Score=192.65 Aligned_cols=287 Identities=14% Similarity=0.166 Sum_probs=218.1
Q ss_pred CccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 26 ~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
...+.|..-|.++.+|...+++.||+. |.|+|||+...... ..+..+..-+
T Consensus 413 ~~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k------------------------~PvsqLdcl~---- 463 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK------------------------SPVSQLDCLN---- 463 (705)
T ss_pred hhhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC------------------------CccccccccC----
Confidence 445788999999999999999999987 68999999764311 1112222111
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 185 (432)
-+..|.++.. .|||+.|++|+.-.++.|||+.......-.++.... -....++.+|+.+..
T Consensus 464 ------rdnyiRSckL--~pdgrtLivGGeastlsiWDLAapTprikaeltssa-----------paCyALa~spDakvc 524 (705)
T KOG0639|consen 464 ------RDNYIRSCKL--LPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSA-----------PACYALAISPDAKVC 524 (705)
T ss_pred ------cccceeeeEe--cCCCceEEeccccceeeeeeccCCCcchhhhcCCcc-----------hhhhhhhcCCcccee
Confidence 1166788888 799999999999999999999876543333333222 456778899999999
Q ss_pred ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (432)
Q Consensus 186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (432)
..+.. ||.|.|||+. ....++.| .+|.+.+.||.++++|..|.+| -|++|+.||++ .+..+.. .
T Consensus 525 Fsccs--dGnI~vwDLh---nq~~Vrqf-qGhtDGascIdis~dGtklWTGGlDntvRcWDlr-egrqlqq--------h 589 (705)
T KOG0639|consen 525 FSCCS--DGNIAVWDLH---NQTLVRQF-QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLR-EGRQLQQ--------H 589 (705)
T ss_pred eeecc--CCcEEEEEcc---cceeeecc-cCCCCCceeEEecCCCceeecCCCccceeehhhh-hhhhhhh--------h
Confidence 99888 9999999999 77888889 8999999999999999999999 99999999999 4443321 3
Q ss_pred CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
...+.|.++.++|++ .+|+.|-.++.+.+......+ ...+..| ..-|.++.|++.|+++++
T Consensus 590 dF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~-----kyqlhlh-------------eScVLSlKFa~cGkwfvS 650 (705)
T KOG0639|consen 590 DFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPE-----KYQLHLH-------------ESCVLSLKFAYCGKWFVS 650 (705)
T ss_pred hhhhhheecccCCCc-cceeeecccCcEEEEecCCcc-----ceeeccc-------------ccEEEEEEecccCceeee
Confidence 456789999999999 999999999999988876533 2555555 789999999999999998
Q ss_pred -eeCCeEEEEec-CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 345 -RDYMNLKVFRY-EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 345 -~~~~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
|-|+.+..|.. ---..|+..+. ...-.|+...++ .+||||+-|..-.||.
T Consensus 651 tGkDnlLnawrtPyGasiFqskE~--------SsVlsCDIS~dd--kyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 651 TGKDNLLNAWRTPYGASIFQSKES--------SSVLSCDISFDD--KYIVTGSGDKKATVYE 702 (705)
T ss_pred cCchhhhhhccCccccceeecccc--------CcceeeeeccCc--eEEEecCCCcceEEEE
Confidence 67799999998 21222332221 122334433333 3799999998877775
No 94
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=3e-25 Score=194.37 Aligned_cols=288 Identities=15% Similarity=0.111 Sum_probs=201.4
Q ss_pred cchhhccccchhhhhhhhcCCCCCcccc--CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcc
Q 014005 3 LNREEASASLEWKCSQAFGERNPDEELQ--DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQ 80 (432)
Q Consensus 3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~--h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 80 (432)
+++..++...-|+|...=......+.++ ....|.+++|++.|..|++.+.....+|+|.+..+.....++ .
T Consensus 183 ~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KG-------D 255 (641)
T KOG0772|consen 183 VSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKG-------D 255 (641)
T ss_pred eeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeecc-------c
Confidence 4455667777888874433222233332 356899999999999888888788999999877654311011 0
Q ss_pred ccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcc-eeeeeecCCC
Q 014005 81 MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHF 158 (432)
Q Consensus 81 ~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~ 158 (432)
.+ ..-...-+||. ..+++.+| +|+ .+.|++++.||++++||+...+ ...+......
T Consensus 256 QY--------I~Dm~nTKGHi------------a~lt~g~w--hP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 256 QY--------IRDMYNTKGHI------------AELTCGCW--HPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred hh--------hhhhhccCCce------------eeeecccc--ccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 00 11123456788 89999999 554 4579999999999999997553 1111111100
Q ss_pred CccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCC--CeeEEEeCCCCCEEEEE
Q 014005 159 PFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF--NINSISNNSDCETFVSA 236 (432)
Q Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~ 236 (432)
. ...-.+..++|++++++++.|.. ||.|.+|+.... ...+...+..+|.. .|+|+.|+++|++|++-
T Consensus 314 ~--------g~Rv~~tsC~~nrdg~~iAagc~--DGSIQ~W~~~~~-~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR 382 (641)
T KOG0772|consen 314 G--------GKRVPVTSCAWNRDGKLIAAGCL--DGSIQIWDKGSR-TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR 382 (641)
T ss_pred C--------CcccCceeeecCCCcchhhhccc--CCceeeeecCCc-ccccceEeeeccCCCCceeEEEeccccchhhhc
Confidence 0 01145778999999999999999 999999998644 33444444478877 99999999999999997
Q ss_pred -cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe------CCCeEEEEEcccccccccccee
Q 014005 237 -DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS------SRGFVRLVDMRQSALCDHSARI 309 (432)
Q Consensus 237 -~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~ 309 (432)
.|+++++||+++.++++....- ......-+.++|||+. +++++|. ..|.+.+||..+-.. +..
T Consensus 383 g~D~tLKvWDLrq~kkpL~~~tg-----L~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d~----v~k 452 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQFKKPLNVRTG-----LPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLDT----VYK 452 (641)
T ss_pred cCCCceeeeeccccccchhhhcC-----CCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccceee----EEE
Confidence 9999999999988887765411 1122345778999998 9999986 346899999887554 333
Q ss_pred ecccccccCCccceeeeecceeEEEEcCCC-CEEEEeeCCeEEEE
Q 014005 310 LRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDYMNLKVF 353 (432)
Q Consensus 310 ~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~s~~~~~i~iw 353 (432)
+.-. ...|..+.|+|.= +.++.+++|++++|
T Consensus 453 i~i~-------------~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 453 IDIS-------------TASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred ecCC-------------CceEEEEeecchhhheeeecCCCceEEE
Confidence 3331 4689999999984 45555577888776
No 95
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=9.5e-25 Score=188.77 Aligned_cols=238 Identities=17% Similarity=0.255 Sum_probs=188.9
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
.|...|.+++.+|||+|||+|+.|..|.||+.++.+.+ ..+.+|.
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv---------------------------~~~~ghr-------- 244 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHV---------------------------KVFKGHR-------- 244 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchh---------------------------hcccccc--------
Confidence 68889999999999999999999999999999998744 6789999
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
+.|.+++| -.....+++++.|+.|++|+++... .+..+-.|+ +.|..+.-..-...+..|.
T Consensus 245 ----~~V~~L~f--r~gt~~lys~s~Drsvkvw~~~~~s--~vetlyGHq-----------d~v~~IdaL~reR~vtVGg 305 (479)
T KOG0299|consen 245 ----GAVSSLAF--RKGTSELYSASADRSVKVWSIDQLS--YVETLYGHQ-----------DGVLGIDALSRERCVTVGG 305 (479)
T ss_pred ----cceeeeee--ecCccceeeeecCCceEEEehhHhH--HHHHHhCCc-----------cceeeechhcccceEEecc
Confidence 99999999 6667789999999999999998654 333444455 7788888878888888888
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc-----
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM----- 263 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~----- 263 (432)
. |.++++|++.. ....+| .++.+.+-|++|-.+. .+++| +||.|.+|++. ..+++-+........
T Consensus 306 r--DrT~rlwKi~e----esqlif-rg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~-KKkplf~~~~AHgv~~~~~~ 376 (479)
T KOG0299|consen 306 R--DRTVRLWKIPE----ESQLIF-RGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLL-KKKPLFTSRLAHGVIPELDP 376 (479)
T ss_pred c--cceeEEEeccc----cceeee-eCCCCCeeeEEEeccc-ceeeccCCceEEEeeec-ccCceeEeeccccccCCccc
Confidence 8 99999999952 223334 7889999999998665 67888 99999999998 455555442211111
Q ss_pred CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (432)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 343 (432)
..+..+|++++..|.. .++|+|+.+|.|++|-+..+-...+++..+.- .+.|++++|+++|+.|+
T Consensus 377 ~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~--------------~GfVNsl~f~~sgk~iv 441 (479)
T KOG0299|consen 377 VNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLRAINLLYSLSL--------------VGFVNSLAFSNSGKRIV 441 (479)
T ss_pred cccccceeeeEecccC-ceEEecCCCCceEEEEecCCccccceeeeccc--------------ccEEEEEEEccCCCEEE
Confidence 1223599999999998 99999999999999999987443222344433 57899999999999877
Q ss_pred Ee
Q 014005 344 SR 345 (432)
Q Consensus 344 s~ 345 (432)
+|
T Consensus 442 ag 443 (479)
T KOG0299|consen 442 AG 443 (479)
T ss_pred Ee
Confidence 75
No 96
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.1e-24 Score=197.28 Aligned_cols=274 Identities=14% Similarity=0.195 Sum_probs=217.2
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
...|.+-|..+++.+.. .++++++||++++|+-..++.. ....+++|.
T Consensus 10 l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l-------------------------~~~~~~~~~------ 57 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYL-------------------------ETHAFEGPK------ 57 (745)
T ss_pred eccCccchheeEecCCe-EEeecCCCCceeeeeccCcccc-------------------------cceecccCc------
Confidence 34788888888876544 7899999999999998766532 234567777
Q ss_pred chhhhhcceeE-EEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 108 KSLEIEEKINR-VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 108 ~~~~~~~~v~~-l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
+-|.. ++|.+ .++-.+++|+.|..|.+|...+.. .+..+..|. +.|.+++...++. ++
T Consensus 58 ------g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~--P~~~LkgH~-----------snVC~ls~~~~~~-~i 116 (745)
T KOG0301|consen 58 ------GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAE--PLYTLKGHK-----------SNVCSLSIGEDGT-LI 116 (745)
T ss_pred ------ceeeccceecc-ccCcceEeecccceEEEEecCCCC--chhhhhccc-----------cceeeeecCCcCc-eE
Confidence 66666 88854 455679999999999999988766 555566666 7788888777777 89
Q ss_pred cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
+|+. |.++++|... ++...+ .+|...|.++..-|++ .+++| .|.+|++|.-. ..++++ .+
T Consensus 117 SgSW--D~TakvW~~~-----~l~~~l-~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---~~l~tf-------~g 177 (745)
T KOG0301|consen 117 SGSW--DSTAKVWRIG-----ELVYSL-QGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---TLLKTF-------SG 177 (745)
T ss_pred eccc--ccceEEecch-----hhhccc-CCcchheeeeeecCCC-cEEeccCcceeeeccCC---chhhhh-------cc
Confidence 9999 9999999876 444556 8999999999999988 78888 99999999764 566655 89
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS- 344 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s- 344 (432)
|...|+.+++-+++ .|++++.||.|++|++. |+. +..+.+| .+-|.+++...++..+++
T Consensus 178 HtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~-ge~----l~~~~gh-------------tn~vYsis~~~~~~~Ivs~ 237 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLD-GEV----LLEMHGH-------------TNFVYSISMALSDGLIVST 237 (745)
T ss_pred chhheeeeEEecCC--CeEeecCCceEEEEecc-Cce----eeeeecc-------------ceEEEEEEecCCCCeEEEe
Confidence 99999999999984 58899999999999994 554 6888887 889999997777777777
Q ss_pred eeCCeEEEEec-CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 345 RDYMNLKVFRY-EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 345 ~~~~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
|.|++++||+. .+.+.+..+....|-...+ .+. -|++|+.||.|+||..
T Consensus 238 gEDrtlriW~~~e~~q~I~lPttsiWsa~~L---------~Ng---DIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 238 GEDRTLRIWKKDECVQVITLPTTSIWSAKVL---------LNG---DIVVGGSDGRVRVFTV 287 (745)
T ss_pred cCCceEEEeecCceEEEEecCccceEEEEEe---------eCC---CEEEeccCceEEEEEe
Confidence 46699999999 8888888877544443333 111 2889999999999984
No 97
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=3.1e-24 Score=204.03 Aligned_cols=302 Identities=14% Similarity=0.187 Sum_probs=221.2
Q ss_pred ccC-CCcEEEEEEcCCCCEEEEec--ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 29 LQD-VDIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 29 ~~h-~~~V~~~~fsp~g~~l~t~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
+.| ...|.+++.+|+|..+|||+ .|+.++||+.+.--.- ....+.. -.+.+.+...|.
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~---------~~~~~~~------l~k~l~~m~~h~---- 69 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE---------KEEKNEN------LPKHLCTMDDHD---- 69 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccch---------hhhhhcc------cchhheeecccc----
Confidence 444 45799999999999999999 8999999997542100 0000000 012334667788
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc----------------ceeeeeecCCCCcccccccccc
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ----------------KVKKIKEMDHFPFVSSENTLLA 169 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 169 (432)
+.|+|+.| ++||++||+|+.|+.|.+|+.... ..+....+..|.
T Consensus 70 --------~sv~CVR~--S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~---------- 129 (942)
T KOG0973|consen 70 --------GSVNCVRF--SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD---------- 129 (942)
T ss_pred --------CceeEEEE--CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC----------
Confidence 99999999 999999999999999999998730 122333444555
Q ss_pred ccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCC
Q 014005 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (432)
Q Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~ 248 (432)
+.|.++.|+|++.++++++. |+.|.+|+.. +..+++++ .+|.+.|..+.|.|-|++||+- +|++|++|++.
T Consensus 130 -~DV~Dv~Wsp~~~~lvS~s~--DnsViiwn~~---tF~~~~vl-~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~- 201 (942)
T KOG0973|consen 130 -SDVLDVNWSPDDSLLVSVSL--DNSVIIWNAK---TFELLKVL-RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS- 201 (942)
T ss_pred -CccceeccCCCccEEEEecc--cceEEEEccc---cceeeeee-ecccccccceEECCccCeeeeecCCceEEEEEcc-
Confidence 89999999999999999999 9999999999 77888888 8999999999999999999998 99999999977
Q ss_pred CCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe----CCCeEEEEEccccccccccceeecccccccCCcccee
Q 014005 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (432)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 324 (432)
.-...+.+. +|-.-..-...+..+.|+||| ++|++.. .-..+.|.+-.+.+. -..|-+|
T Consensus 202 dw~i~k~It-~pf~~~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk~----~~~LvGH----------- 264 (942)
T KOG0973|consen 202 DWGIEKSIT-KPFEESPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWKV----DKDLVGH----------- 264 (942)
T ss_pred cceeeEeec-cchhhCCCcceeeecccCCCc-CeecchhhccCCcceeEEEecCCcee----eeeeecC-----------
Confidence 333444331 111112223468899999999 9999864 233688888665553 4677787
Q ss_pred eeecceeEEEEcCC-----CC------------EEEEe-eCCeEEEEec-CcceeEeecceeeeehhhhhcccccccccc
Q 014005 325 EIIASISDIKFAND-----GQ------------HLLSR-DYMNLKVFRY-EPVMTLSFCGIYVWILRQLQHSRFMSIYAL 385 (432)
Q Consensus 325 ~~~~~v~~~~~s~d-----g~------------~l~s~-~~~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (432)
.+++..++|+|. .. .+|+| .|++|-||.. .+...+-.|. +....+.++..+
T Consensus 265 --~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~--------lf~~SI~DmsWs 334 (942)
T KOG0973|consen 265 --SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN--------LFNKSIVDMSWS 334 (942)
T ss_pred --CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh--------hhcCceeeeeEc
Confidence 789999999982 11 34556 4599999999 2222223332 234455555555
Q ss_pred eeeEEEEeecccceeeeec
Q 014005 386 SCVIYIITTLYLINLSALS 404 (432)
Q Consensus 386 ~~~~~~~~g~~~~~i~~~~ 404 (432)
...+.+...|+||+|.+..
T Consensus 335 pdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 335 PDGFSLFACSLDGTVALIH 353 (942)
T ss_pred CCCCeEEEEecCCeEEEEE
Confidence 5566788889999999887
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=3.8e-24 Score=183.68 Aligned_cols=244 Identities=16% Similarity=0.196 Sum_probs=196.9
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
+|...|+.+.|+|+...+++++.|-.|+||........ .....|+
T Consensus 259 Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~---------------------------~~~~~h~-------- 303 (506)
T KOG0289|consen 259 GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP---------------------------TSSRPHE-------- 303 (506)
T ss_pred CcceEEEEEEeccchhheeecCCcceEEeeccccccCc---------------------------ccccccc--------
Confidence 67889999999999999999999999999998765422 4566788
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
.+|+.+.. +|.|.||++++.|++..+.|++++............ -.+.+.+|+||+..+.+|.
T Consensus 304 ----~~V~~ls~--h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~-----------v~~ts~~fHpDgLifgtgt 366 (506)
T KOG0289|consen 304 ----EPVTGLSL--HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD-----------VEYTSAAFHPDGLIFGTGT 366 (506)
T ss_pred ----ccceeeee--ccCCcEEEEecCCceEEEEEccCCcEEEEEeecccc-----------ceeEEeeEcCCceEEeccC
Confidence 99999999 899999999999999999999998744433322111 4578999999999999999
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
. |+.++|||+. .......| .+|.+.|..++|+.+|-+|+++ +|+.|++||++ ..+.++++.+ .. ..
T Consensus 367 ~--d~~vkiwdlk---s~~~~a~F-pght~~vk~i~FsENGY~Lat~add~~V~lwDLR-Kl~n~kt~~l-----~~-~~ 433 (506)
T KOG0289|consen 367 P--DGVVKIWDLK---SQTNVAKF-PGHTGPVKAISFSENGYWLATAADDGSVKLWDLR-KLKNFKTIQL-----DE-KK 433 (506)
T ss_pred C--CceEEEEEcC---CccccccC-CCCCCceeEEEeccCceEEEEEecCCeEEEEEeh-hhcccceeec-----cc-cc
Confidence 8 9999999999 56677778 7899999999999999999999 99999999999 5556665521 22 23
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~- 347 (432)
.+.++.|++.| .+|+.++.|=+|++++-.+.. .+.+..+..| .+..+.+.|..+.+++++++.
T Consensus 434 ~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~--W~~~~~~~~~-------------sg~st~v~Fg~~aq~l~s~smd 497 (506)
T KOG0289|consen 434 EVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKS--WTEIKELADH-------------SGLSTGVRFGEHAQYLASTSMD 497 (506)
T ss_pred cceeEEEcCCC-CeEEeecceeEEEEEeccccc--ceeeehhhhc-------------ccccceeeecccceEEeeccch
Confidence 69999999999 999999888666666643322 2224556665 678899999999999999755
Q ss_pred CeEEEEe
Q 014005 348 MNLKVFR 354 (432)
Q Consensus 348 ~~i~iwd 354 (432)
..++++.
T Consensus 498 ~~l~~~a 504 (506)
T KOG0289|consen 498 AILRLYA 504 (506)
T ss_pred hheEEee
Confidence 6667664
No 99
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.1e-23 Score=173.57 Aligned_cols=247 Identities=14% Similarity=0.144 Sum_probs=190.3
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
.+.|+.+.|+|.++.|++++.||++++||....... ..-.|.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~----------------------------~~~~~~---------- 54 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK----------------------------LKFKHG---------- 54 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh----------------------------hheecC----------
Confidence 468999999999999999999999999999875422 122355
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
.++.+.+| . +...+++|+.||.|+.+|+.++....+..+. ..+.++.+.+....+++|++
T Consensus 55 --~plL~c~F--~-d~~~~~~G~~dg~vr~~Dln~~~~~~igth~--------------~~i~ci~~~~~~~~vIsgsW- 114 (323)
T KOG1036|consen 55 --APLLDCAF--A-DESTIVTGGLDGQVRRYDLNTGNEDQIGTHD--------------EGIRCIEYSYEVGCVISGSW- 114 (323)
T ss_pred --Cceeeeec--c-CCceEEEeccCceEEEEEecCCcceeeccCC--------------CceEEEEeeccCCeEEEccc-
Confidence 89999999 4 3568999999999999999998866655543 78999999999999999999
Q ss_pred ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (432)
|+.|++||.+ ...+...+ .....|.++..+ ++.|++| .|..+.+||+++.....+.- -....-.+
T Consensus 115 -D~~ik~wD~R---~~~~~~~~--d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~r------eS~lkyqt 180 (323)
T KOG1036|consen 115 -DKTIKFWDPR---NKVVVGTF--DQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRR------ESSLKYQT 180 (323)
T ss_pred -CccEEEEecc---cccccccc--ccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhc------cccceeEE
Confidence 9999999998 33343333 334478887764 5678888 99999999999655544221 12334568
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCe
Q 014005 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN 349 (432)
Q Consensus 271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~ 349 (432)
+++++-|++ .=+++++-||+|.+=.+...+......-.|+.|...... .+..-+|++++|+|--..|||| +||.
T Consensus 181 R~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~----~~~~yPVNai~Fhp~~~tfaTgGsDG~ 255 (323)
T KOG1036|consen 181 RCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKD----TEIIYPVNAIAFHPIHGTFATGGSDGI 255 (323)
T ss_pred EEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCC----ceEEEEeceeEeccccceEEecCCCce
Confidence 999999977 678889999999887776653322234677777433322 2234699999999998889996 6799
Q ss_pred EEEEec
Q 014005 350 LKVFRY 355 (432)
Q Consensus 350 i~iwd~ 355 (432)
|.+||+
T Consensus 256 V~~Wd~ 261 (323)
T KOG1036|consen 256 VNIWDL 261 (323)
T ss_pred EEEccC
Confidence 999999
No 100
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=2.4e-25 Score=184.39 Aligned_cols=242 Identities=15% Similarity=0.210 Sum_probs=204.9
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeee-cCCccccccc
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLK 108 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~h~~~~~~~~ 108 (432)
-+.++|.|+.||.|..+||+|+.||.|++|.+.++. |++.|. +|+
T Consensus 261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~---------------------------ClRrFdrAHt------- 306 (508)
T KOG0275|consen 261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ---------------------------CLRRFDRAHT------- 306 (508)
T ss_pred ecccceEEEeecccHHHhhccCcCCcEEEEEEecch---------------------------HHHHhhhhhc-------
Confidence 357899999999999999999999999999999986 335565 788
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..|+++.| +.|+..+++++.|.++++.-+++|+ .+.++.+|. +.|....|.+++..++++
T Consensus 307 -----kGvt~l~F--SrD~SqiLS~sfD~tvRiHGlKSGK--~LKEfrGHs-----------Syvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 307 -----KGVTCLSF--SRDNSQILSASFDQTVRIHGLKSGK--CLKEFRGHS-----------SYVNEATFTDDGHHIISA 366 (508)
T ss_pred -----cCeeEEEE--ccCcchhhcccccceEEEeccccch--hHHHhcCcc-----------ccccceEEcCCCCeEEEe
Confidence 99999999 8999999999999999999999998 455666666 889999999999999999
Q ss_pred eeeccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
+. ||+|++|+.. +..|+.+|+ .+.+..|+++-.-|. ...++++ ..+++++-++. ++.++.+.- -..
T Consensus 367 Ss--DgtvkvW~~K---tteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q--GQvVrsfsS----GkR 435 (508)
T KOG0275|consen 367 SS--DGTVKVWHGK---TTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ--GQVVRSFSS----GKR 435 (508)
T ss_pred cC--CccEEEecCc---chhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc--ceEEeeecc----CCc
Confidence 99 9999999999 788888883 245567888877774 4567777 89999999998 788877611 122
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS- 344 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s- 344 (432)
..+..-+.+.+|.| .++.+.+.|+.++.|...+|++ .+++.-| ...+..++-+|...+||+
T Consensus 436 EgGdFi~~~lSpkG-ewiYcigED~vlYCF~~~sG~L----E~tl~Vh-------------EkdvIGl~HHPHqNllAsY 497 (508)
T KOG0275|consen 436 EGGDFINAILSPKG-EWIYCIGEDGVLYCFSVLSGKL----ERTLPVH-------------EKDVIGLTHHPHQNLLASY 497 (508)
T ss_pred cCCceEEEEecCCC-cEEEEEccCcEEEEEEeecCce----eeeeecc-------------cccccccccCcccchhhhh
Confidence 23456778899999 9999999999999999999987 5778776 778889999999999999
Q ss_pred eeCCeEEEEe
Q 014005 345 RDYMNLKVFR 354 (432)
Q Consensus 345 ~~~~~i~iwd 354 (432)
+.||.+++|.
T Consensus 498 sEDgllKLWk 507 (508)
T KOG0275|consen 498 SEDGLLKLWK 507 (508)
T ss_pred cccchhhhcC
Confidence 5669999995
No 101
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.9e-23 Score=171.11 Aligned_cols=241 Identities=16% Similarity=0.189 Sum_probs=180.7
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
..|+++.| +++|.++++++.|..+++||...++..+.... +. -.+..+.|......+..++...|
T Consensus 15 ~~i~sl~f--s~~G~~litss~dDsl~LYd~~~g~~~~ti~s--kk-----------yG~~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 15 GKINSLDF--SDDGLLLITSSEDDSLRLYDSLSGKQVKTINS--KK-----------YGVDLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred CceeEEEe--cCCCCEEEEecCCCeEEEEEcCCCceeeEeec--cc-----------ccccEEEEecCCceEEEccCCCC
Confidence 78999999 89999999999999999999998874443332 22 45666777666666666655558
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (432)
.+|+..++. +.+.++.| .+|...|++++.+|-+..++++ .|++|++||++ ...+.-.+ .. ..-..
T Consensus 80 ~tIryLsl~---dNkylRYF-~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR-~~~cqg~l-------~~--~~~pi 145 (311)
T KOG1446|consen 80 DTIRYLSLH---DNKYLRYF-PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR-VKKCQGLL-------NL--SGRPI 145 (311)
T ss_pred CceEEEEee---cCceEEEc-CCCCceEEEEEecCCCCeEEecccCCeEEeeEec-CCCCceEE-------ec--CCCcc
Confidence 899999999 88999999 9999999999999999999999 99999999999 55555443 11 12235
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEE
Q 014005 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK 351 (432)
Q Consensus 273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~ 351 (432)
++|+|.| -++|++...+.|++||+|+-..-. ..+|.- .. +.....+.+.|||||++|+.++. +.++
T Consensus 146 ~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkgP--F~tf~i-~~---------~~~~ew~~l~FS~dGK~iLlsT~~s~~~ 212 (311)
T KOG1446|consen 146 AAFDPEG-LIFALANGSELIKLYDLRSFDKGP--FTTFSI-TD---------NDEAEWTDLEFSPDGKSILLSTNASFIY 212 (311)
T ss_pred eeECCCC-cEEEEecCCCeEEEEEecccCCCC--ceeEcc-CC---------CCccceeeeEEcCCCCEEEEEeCCCcEE
Confidence 7999999 999999888899999999753211 233322 00 11467899999999999998866 9999
Q ss_pred EEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 352 VFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 352 iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
+.|- ..+.++..+... ...++. ..+.....++++|+.||+|++|+
T Consensus 213 ~lDAf~G~~~~tfs~~~~~-------~~~~~~-a~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 213 LLDAFDGTVKSTFSGYPNA-------GNLPLS-ATFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred EEEccCCcEeeeEeeccCC-------CCccee-EEECCCCcEEEEecCCCcEEEEE
Confidence 9999 566666665430 011111 12222334699999999999999
No 102
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.1e-24 Score=176.41 Aligned_cols=239 Identities=15% Similarity=0.204 Sum_probs=186.2
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
...|.++|++++.+ |.++|+|+.|-+|+|||+...+.+ ..+..|.
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql---------------------------g~ll~Ha------ 83 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL---------------------------GILLSHA------ 83 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh---------------------------cceeccc------
Confidence 34688899999976 999999999999999999887654 6778888
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
+.|+++.|.+......|++|+.||.|.+|+...-. .+..+..|. +.|+.++.+|.++...+
T Consensus 84 ------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~--~~~slK~H~-----------~~Vt~lsiHPS~KLALs 144 (362)
T KOG0294|consen 84 ------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE--LLKSLKAHK-----------GQVTDLSIHPSGKLALS 144 (362)
T ss_pred ------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeE--Eeeeecccc-----------cccceeEecCCCceEEE
Confidence 99999999532223489999999999999987654 555566666 78999999999999999
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
.+. |+.+++||+-.+....+.. ..+ ....+.|+|.|.+++.+.-..|-+|.++ ....+..+ ...
T Consensus 145 Vg~--D~~lr~WNLV~Gr~a~v~~---L~~--~at~v~w~~~Gd~F~v~~~~~i~i~q~d-~A~v~~~i--------~~~ 208 (362)
T KOG0294|consen 145 VGG--DQVLRTWNLVRGRVAFVLN---LKN--KATLVSWSPQGDHFVVSGRNKIDIYQLD-NASVFREI--------ENP 208 (362)
T ss_pred EcC--CceeeeehhhcCccceeec---cCC--cceeeEEcCCCCEEEEEeccEEEEEecc-cHhHhhhh--------hcc
Confidence 888 9999999987443333322 222 3344999999999998866788999998 33333322 122
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEE--cCCCCEEEEe
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF--ANDGQHLLSR 345 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~--s~dg~~l~s~ 345 (432)
..+.++.|... ..|++|+.|+.|.+||..+... ...+.+| .+.|.++.+ .|++.||+++
T Consensus 209 ~r~l~~~~l~~--~~L~vG~d~~~i~~~D~ds~~~----~~~~~AH-------------~~RVK~i~~~~~~~~~~lvTa 269 (362)
T KOG0294|consen 209 KRILCATFLDG--SELLVGGDNEWISLKDTDSDTP----LTEFLAH-------------ENRVKDIASYTNPEHEYLVTA 269 (362)
T ss_pred ccceeeeecCC--ceEEEecCCceEEEeccCCCcc----ceeeecc-------------hhheeeeEEEecCCceEEEEe
Confidence 44666666543 6889999999999999987554 6888887 789999884 4568899995
Q ss_pred -eCCeEEEEec
Q 014005 346 -DYMNLKVFRY 355 (432)
Q Consensus 346 -~~~~i~iwd~ 355 (432)
+||.|++||+
T Consensus 270 SSDG~I~vWd~ 280 (362)
T KOG0294|consen 270 SSDGFIKVWDI 280 (362)
T ss_pred ccCceEEEEEc
Confidence 6799999999
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.1e-24 Score=195.89 Aligned_cols=252 Identities=17% Similarity=0.217 Sum_probs=201.1
Q ss_pred cCCCcEE---EEEEc-CCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 30 QDVDIVS---AIEFD-KTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 30 ~h~~~V~---~~~fs-p~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
+|...|. .+..+ |.++||.||+.||.|++|+....... |+..+...++.|.
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~---------------------~s~~~~asme~Hs---- 73 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE---------------------PSTPYIASMEHHS---- 73 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCC---------------------cccchhhhhhhhH----
Confidence 5666666 55555 46778999999999999998764321 2233567888899
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccC-CCCCcc
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN-PPSFAH 184 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~ 184 (432)
+.|+++.. -.+++.|++++.|-+|++|+...+..-....+..|. ..|.++++ .++...
T Consensus 74 --------DWVNDiiL--~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~-----------DYVkcla~~ak~~~l 132 (735)
T KOG0308|consen 74 --------DWVNDIIL--CGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHK-----------DYVKCLAYIAKNNEL 132 (735)
T ss_pred --------hHHhhHHh--hcCCCceEEecCCceEEEeecccCcchhHhhhhccc-----------chheeeeecccCcee
Confidence 88888888 568889999999999999999876422333444455 78999999 888889
Q ss_pred eecceeeccceEEEEeeccccc-------ceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEe
Q 014005 185 GYHLEWTENMATKIANVGNSVH-------ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV 256 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~ 256 (432)
+++|+. |+.|.+||++.... ......+..++...|++++.++.|..+++| -.+.+++||.++..+.++
T Consensus 133 vaSgGL--D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk-- 208 (735)
T KOG0308|consen 133 VASGGL--DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK-- 208 (735)
T ss_pred EEecCC--CccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee--
Confidence 999999 99999999984411 112222323788899999999999889999 899999999994333333
Q ss_pred ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc
Q 014005 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (432)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s 336 (432)
+.+|+..|+.+..++|| ..+++++.||+|++||+...+ | +.++..| ...|+++..+
T Consensus 209 ------LrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQr-C---l~T~~vH-------------~e~VWaL~~~ 264 (735)
T KOG0308|consen 209 ------LRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQR-C---LATYIVH-------------KEGVWALQSS 264 (735)
T ss_pred ------eeccccceEEEEEcCCC-CeEeecCCCceEEeeeccccc-e---eeeEEec-------------cCceEEEeeC
Confidence 37999999999999999 999999999999999999655 4 6778887 7789999999
Q ss_pred CCCCEEEEee-CCeEEEEec
Q 014005 337 NDGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 337 ~dg~~l~s~~-~~~i~iwd~ 355 (432)
|+=.++.+|+ ++.|..=|+
T Consensus 265 ~sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 265 PSFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred CCcceEEecCCCCcEEeccc
Confidence 9999999985 499999888
No 104
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1.8e-24 Score=186.98 Aligned_cols=251 Identities=13% Similarity=0.121 Sum_probs=184.1
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeee--------eecCCCCccccccccccccccccccCCC
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI--------KEMDHFPFVSSENTLLAEKNFMNEHNPP 180 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 180 (432)
.+.+++.|+.+.+.| .+...+++.+..+.|.|||.....-... ..+.+|. ..-++++|++
T Consensus 120 ~i~h~gEVnRaRymP-Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~-----------~eg~glsWn~ 187 (422)
T KOG0264|consen 120 KINHDGEVNRARYMP-QNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE-----------KEGYGLSWNR 187 (422)
T ss_pred eccCCccchhhhhCC-CCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeec-----------cccccccccc
Confidence 344459999999954 3445667778889999999864321111 1222232 2345688887
Q ss_pred CC-cceecceeeccceEEEEeeccccc----ceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCC-CCce
Q 014005 181 SF-AHGYHLEWTENMATKIANVGNSVH----ARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEI-SDQC 252 (432)
Q Consensus 181 ~~-~~~~~~~~~~~~~v~i~d~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~-~~~~ 252 (432)
.. ..+++++. ++.+.+||+..... ..+...+ .+|...|..++|++... .|++. +|+.+.|||+|. +.++
T Consensus 188 ~~~g~Lls~~~--d~~i~lwdi~~~~~~~~~~~p~~~~-~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~ 264 (422)
T KOG0264|consen 188 QQEGTLLSGSD--DHTICLWDINAESKEDKVVDPKTIF-SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP 264 (422)
T ss_pred ccceeEeeccC--CCcEEEEeccccccCCccccceEEe-ecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC
Confidence 64 45666666 99999999986533 3344556 89999999999999654 45555 999999999994 2222
Q ss_pred eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeE
Q 014005 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (432)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~ 332 (432)
.. ...+|.+.|++++|+|-+..+||+|+.|++|++||+|+-..+ +..+.+| ...|..
T Consensus 265 ~~-------~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~---lh~~e~H-------------~dev~~ 321 (422)
T KOG0264|consen 265 SH-------SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP---LHTFEGH-------------EDEVFQ 321 (422)
T ss_pred cc-------cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC---ceeccCC-------------CcceEE
Confidence 22 348999999999999988799999999999999999976654 6888887 899999
Q ss_pred EEEcCCC-CEEEE-eeCCeEEEEec--------------CcceeEeecceeeeehhhhhcccccccccce-eeEEEEeec
Q 014005 333 IKFANDG-QHLLS-RDYMNLKVFRY--------------EPVMTLSFCGIYVWILRQLQHSRFMSIYALS-CVIYIITTL 395 (432)
Q Consensus 333 ~~~s~dg-~~l~s-~~~~~i~iwd~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 395 (432)
+.|||+. ..||+ |.|+++.+||+ .+...+-.|+. ++.++++...+. ..+.|++.+
T Consensus 322 V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgG--------H~~kV~DfsWnp~ePW~I~Sva 393 (422)
T KOG0264|consen 322 VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG--------HTAKVSDFSWNPNEPWTIASVA 393 (422)
T ss_pred EEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecC--------cccccccccCCCCCCeEEEEec
Confidence 9999985 46666 46799999999 12223344554 455666655554 456799999
Q ss_pred ccceeeeecc
Q 014005 396 YLINLSALSA 405 (432)
Q Consensus 396 ~~~~i~~~~~ 405 (432)
.|+.+.||.-
T Consensus 394 eDN~LqIW~~ 403 (422)
T KOG0264|consen 394 EDNILQIWQM 403 (422)
T ss_pred CCceEEEeec
Confidence 9999999994
No 105
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6e-24 Score=185.19 Aligned_cols=278 Identities=15% Similarity=0.158 Sum_probs=203.3
Q ss_pred cccCCCcEEEEEEcCCCCE-EEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~-l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
.....+.|++++|+|...+ +|+.+. -.+.||+..+.... .++...+
T Consensus 22 ~~ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~---------------------------k~~srFk----- 68 (487)
T KOG0310|consen 22 VHKEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVR---------------------------KTFSRFK----- 68 (487)
T ss_pred cccccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhh---------------------------hhHHhhc-----
Confidence 3455678999999997654 444333 47999998775432 2333333
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc-ce
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HG 185 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~ 185 (432)
+.|.++.| -.||++++.|...|.|+++|+.+.. .+..+..|. .++..+.|+|... .+
T Consensus 69 -------~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~--iLR~~~ah~-----------apv~~~~f~~~d~t~l 126 (487)
T KOG0310|consen 69 -------DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKSRV--ILRQLYAHQ-----------APVHVTKFSPQDNTML 126 (487)
T ss_pred -------cceeEEEe--ecCCeEEEccCCcCcEEEeccccHH--HHHHHhhcc-----------CceeEEEecccCCeEE
Confidence 88999999 7899999999999999999976643 222334444 7788899988754 55
Q ss_pred ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (432)
Q Consensus 186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (432)
+.|+. |+.+++||+. +......+ .+|++.|.|.+++|... .+++| .||.|++||++.....+..
T Consensus 127 ~s~sD--d~v~k~~d~s---~a~v~~~l-~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e-------- 192 (487)
T KOG0310|consen 127 VSGSD--DKVVKYWDLS---TAYVQAEL-SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE-------- 192 (487)
T ss_pred EecCC--CceEEEEEcC---CcEEEEEe-cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE--------
Confidence 66666 8899999998 44443345 89999999999999755 67788 9999999999955444443
Q ss_pred CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (432)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 343 (432)
-.|..+|..+.+-|.| .++|+++. +.|++||+.+|... +..+..| ...|+++.+..++..|+
T Consensus 193 lnhg~pVe~vl~lpsg-s~iasAgG-n~vkVWDl~~G~ql---l~~~~~H-------------~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 193 LNHGCPVESVLALPSG-SLIASAGG-NSVKVWDLTTGGQL---LTSMFNH-------------NKTVTCLRLASDSTRLL 254 (487)
T ss_pred ecCCCceeeEEEcCCC-CEEEEcCC-CeEEEEEecCCcee---hhhhhcc-------------cceEEEEEeecCCceEe
Confidence 4788999999999998 89998874 48999999966542 4555556 68999999999999999
Q ss_pred Eee-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 344 SRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 344 s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
+|+ |+.+++||+ +.+..+..+.+ +.++.....-..++.|-.+|-+.+-.
T Consensus 255 S~sLD~~VKVfd~t~~Kvv~s~~~~~p------------vLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTNYKVVHSWKYPGP------------VLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred ecccccceEEEEccceEEEEeeecccc------------eeeEEecCCCceEEEecccceeeeeh
Confidence 874 599999998 44555554442 22222222222466777777777664
No 106
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=1.3e-24 Score=173.71 Aligned_cols=209 Identities=20% Similarity=0.267 Sum_probs=176.1
Q ss_pred CCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005 24 NPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (432)
Q Consensus 24 ~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~ 103 (432)
.+...++|...|.+++|+.|.++|++|+.+..+||||++..+. +...+.+|.
T Consensus 92 delhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A--------------------------pp~E~~ght-- 143 (334)
T KOG0278|consen 92 DELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA--------------------------PPKEISGHT-- 143 (334)
T ss_pred hhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCC--------------------------CchhhcCCC--
Confidence 5667789999999999999999999999999999999988653 235788999
Q ss_pred ccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (432)
Q Consensus 104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 183 (432)
+.|..+-|| + ..+.+++++.|++|++||.+++.......++ ..+.++..++++.
T Consensus 144 ----------g~Ir~v~wc-~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~--------------s~VtSlEvs~dG~ 197 (334)
T KOG0278|consen 144 ----------GGIRTVLWC-H-EDKCILSSADDKTVRLWDHRTGTEVQSLEFN--------------SPVTSLEVSQDGR 197 (334)
T ss_pred ----------CcceeEEEe-c-cCceEEeeccCCceEEEEeccCcEEEEEecC--------------CCCcceeeccCCC
Confidence 999999997 3 4457888899999999999999855544443 5788899999998
Q ss_pred ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC
Q 014005 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (432)
Q Consensus 184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~ 262 (432)
++.+.. .+.|++||.. ....++.+ .....|.+...+|+...+++| .|..++-||.. ++..+..+
T Consensus 198 ilTia~---gssV~Fwdak---sf~~lKs~--k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~-TgeEi~~~------ 262 (334)
T KOG0278|consen 198 ILTIAY---GSSVKFWDAK---SFGLLKSY--KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYN-TGEEIGSY------ 262 (334)
T ss_pred EEEEec---CceeEEeccc---cccceeec--cCccccccccccCCCceEEecCcceEEEEEecc-CCceeeec------
Confidence 887765 6789999998 56666665 456789999999999999999 99999999999 55544432
Q ss_pred cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
..+|.++|.++.|+|+| ...|+|+.||+|+||.+..++.
T Consensus 263 nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 263 NKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ccCCCCceEEEEECCCC-ceeeccCCCceEEEEEecCCCc
Confidence 27999999999999999 9999999999999999887654
No 107
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=2.5e-23 Score=167.47 Aligned_cols=230 Identities=15% Similarity=0.188 Sum_probs=183.5
Q ss_pred CccccCCCcEEEEEEcCC-CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005 26 DEELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (432)
Q Consensus 26 ~~~~~h~~~V~~~~fsp~-g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~ 104 (432)
...-.|.+.|-.+.|+|. ...+++++.|.+|++||+..++.. ......
T Consensus 58 ~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~---------------------------~~i~~~---- 106 (313)
T KOG1407|consen 58 LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT---------------------------ARIETK---- 106 (313)
T ss_pred hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE---------------------------EEeecc----
Confidence 334578889999999885 468999999999999999987632 333222
Q ss_pred cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
..-.-+.| +|+|.+++.++.|..|.+.|.++.+......+. -.+..+.|+.++.+
T Consensus 107 ---------~eni~i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~--------------~e~ne~~w~~~nd~ 161 (313)
T KOG1407|consen 107 ---------GENINITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK--------------FEVNEISWNNSNDL 161 (313)
T ss_pred ---------CcceEEEE--cCCCCEEEEecCcccEEEEEecccceeehhccc--------------ceeeeeeecCCCCE
Confidence 22345788 899999999999999999999877644333322 34455677655554
Q ss_pred eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (432)
+..... .|.|.|.... .-++++.+ ++|.....|+.|+|+|++||+| .|..+.+||++ .--|.+.+
T Consensus 162 Fflt~G--lG~v~ILsyp---sLkpv~si-~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~-ELiC~R~i------- 227 (313)
T KOG1407|consen 162 FFLTNG--LGCVEILSYP---SLKPVQSI-KAHPSNCICIEFDPDGRYFATGSADALVSLWDVD-ELICERCI------- 227 (313)
T ss_pred EEEecC--CceEEEEecc---cccccccc-ccCCcceEEEEECCCCceEeeccccceeeccChh-Hhhhheee-------
Confidence 443333 5788888877 67888888 8999999999999999999999 99999999999 66787776
Q ss_pred CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (432)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 343 (432)
..+.-+|+.+.|+.+| ++||+|++|-.|-|=+..+|.. +..++. .++...++|+|...+||
T Consensus 228 sRldwpVRTlSFS~dg-~~lASaSEDh~IDIA~vetGd~----~~eI~~--------------~~~t~tVAWHPk~~LLA 288 (313)
T KOG1407|consen 228 SRLDWPVRTLSFSHDG-RMLASASEDHFIDIAEVETGDR----VWEIPC--------------EGPTFTVAWHPKRPLLA 288 (313)
T ss_pred ccccCceEEEEeccCc-ceeeccCccceEEeEecccCCe----EEEeec--------------cCCceeEEecCCCceee
Confidence 7888899999999999 9999999999999999999986 344544 67889999999998888
Q ss_pred E
Q 014005 344 S 344 (432)
Q Consensus 344 s 344 (432)
-
T Consensus 289 y 289 (313)
T KOG1407|consen 289 Y 289 (313)
T ss_pred E
Confidence 5
No 108
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=1.5e-23 Score=172.68 Aligned_cols=229 Identities=20% Similarity=0.255 Sum_probs=177.3
Q ss_pred eeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCccee-eeeec------CCCCcccccccc
Q 014005 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEM------DHFPFVSSENTL 167 (432)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~------~~~~~~~~~~~~ 167 (432)
..+..|+ ..+.+.+| ++||.++++|+.|-.|+|.|++.-..+ ....+ ..|+. . -.-.
T Consensus 106 ~ylt~HK------------~~cR~aaf--s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPv-I-RTlY 169 (430)
T KOG0640|consen 106 KYLTSHK------------SPCRAAAF--SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPV-I-RTLY 169 (430)
T ss_pred EEEeecc------------cceeeeee--CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCce-E-eehh
Confidence 4566787 99999999 999999999999999999998731100 00000 00110 0 0001
Q ss_pred ccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 014005 168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL 246 (432)
Q Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~ 246 (432)
.....|.++.|+|....+++++. |+.|+++|+......+..+.+ .....+.++.|+|.|.++++| +-.++++||+
T Consensus 170 DH~devn~l~FHPre~ILiS~sr--D~tvKlFDfsK~saKrA~K~~--qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv 245 (430)
T KOG0640|consen 170 DHVDEVNDLDFHPRETILISGSR--DNTVKLFDFSKTSAKRAFKVF--QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDV 245 (430)
T ss_pred hccCcccceeecchhheEEeccC--CCeEEEEecccHHHHHHHHHh--hccceeeeEeecCCCceEEEecCCCceeEEec
Confidence 12378999999999999999999 999999999865444445554 345689999999999999999 8899999999
Q ss_pred CCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc-cccccCCccceee
Q 014005 247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD-AAESHGSKSFFTE 325 (432)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~ 325 (432)
+ +-+++..- ..-..|.+.|+++.+++.+ ++.++|+.||.|+|||--+++- +.++.. |
T Consensus 246 ~-T~Qcfvsa----nPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rC----v~t~~~AH------------ 303 (430)
T KOG0640|consen 246 N-TYQCFVSA----NPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRC----VRTIGNAH------------ 303 (430)
T ss_pred c-ceeEeeec----CcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHH----HHHHHhhc------------
Confidence 9 67776543 1236899999999999999 9999999999999999877663 455543 3
Q ss_pred eecceeEEEEcCCCCEEEEe-eCCeEEEEec---CcceeEeecc
Q 014005 326 IIASISDIKFANDGQHLLSR-DYMNLKVFRY---EPVMTLSFCG 365 (432)
Q Consensus 326 ~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~---~~~~~~~~~~ 365 (432)
....|.+..|..+|+||+++ -|..+++|.+ ++++++...+
T Consensus 304 ~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg 347 (430)
T KOG0640|consen 304 GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAG 347 (430)
T ss_pred CCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCC
Confidence 14689999999999999985 5699999999 7888887653
No 109
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.7e-23 Score=192.46 Aligned_cols=248 Identities=14% Similarity=0.205 Sum_probs=194.8
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCc-CCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK-NTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
..|+..-+.|+|.|+|++|.+++.||.|++|+..... .. .++.-+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P---------------------------~ti~~~g------ 56 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP---------------------------ETIDISG------ 56 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC---------------------------chhhccC------
Confidence 4688899999999999999999999999999976652 11 1222244
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCccee-eeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
..|.+++- ++.+|++|+.+++|.+|.+..++.. .+..+. -++++++++-++.+++
T Consensus 57 ------~~v~~ia~----~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft--------------lp~r~~~v~g~g~~ia 112 (933)
T KOG1274|consen 57 ------ELVSSIAC----YSNHFLTGSEQNTVLRYKFPSGEEDTILARFT--------------LPIRDLAVSGSGKMIA 112 (933)
T ss_pred ------ceeEEEee----cccceEEeeccceEEEeeCCCCCccceeeeee--------------ccceEEEEecCCcEEE
Confidence 67777776 4569999999999999999877643 222222 5688999999999999
Q ss_pred cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
.|+. |-.|++.++. +....+.+ .+|+++|.++.++|++++||+. -||+|++||++ .+.+...+..-......
T Consensus 113 agsd--D~~vK~~~~~---D~s~~~~l-rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~-~~~~~~tl~~v~k~n~~ 185 (933)
T KOG1274|consen 113 AGSD--DTAVKLLNLD---DSSQEKVL-RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ-DGILSKTLTGVDKDNEF 185 (933)
T ss_pred eecC--ceeEEEEecc---ccchheee-cccCCceeeeeEcCCCCEEEEEecCceEEEEEcc-cchhhhhcccCCccccc
Confidence 9999 9999999998 66677777 8999999999999999999999 99999999999 56555544221111122
Q ss_pred C-CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 266 L-TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 266 ~-~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
- ...+..++|+|++ ..|+....|+.|++|+..++.. ...+... .+...+..++|+|+|+|||+
T Consensus 186 ~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~----~f~Lr~~-----------~~ss~~~~~~wsPnG~YiAA 249 (933)
T KOG1274|consen 186 ILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWEL----QFKLRDK-----------LSSSKFSDLQWSPNGKYIAA 249 (933)
T ss_pred cccceeeeeeecCCC-CeEEeeccCCeEEEEccCCcee----heeeccc-----------ccccceEEEEEcCCCcEEee
Confidence 2 4567889999998 6777888899999999988776 3444431 01344899999999999999
Q ss_pred eeC-CeEEEEecC
Q 014005 345 RDY-MNLKVFRYE 356 (432)
Q Consensus 345 ~~~-~~i~iwd~~ 356 (432)
++- |.|.|||++
T Consensus 250 s~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 250 STLDGQILVWNVD 262 (933)
T ss_pred eccCCcEEEEecc
Confidence 855 999999993
No 110
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.3e-23 Score=178.61 Aligned_cols=291 Identities=16% Similarity=0.167 Sum_probs=211.8
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
.+.|+++.|+|....|++|+.||+++||.++.+... .++.+.-..
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-------------------------~lqS~~l~~---------- 257 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-------------------------KLQSIHLEK---------- 257 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-------------------------hheeeeecc----------
Confidence 568999999999999999999999999999887532 234443334
Q ss_pred hhcceeEEEEEEcCCCC-EEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 112 IEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
.+|.+..| .|+|+ .+++++....++.||+.+.+..++....... +..+.....++++.+++..+.
T Consensus 258 --fPi~~a~f--~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e----------~~~~e~FeVShd~~fia~~G~ 323 (514)
T KOG2055|consen 258 --FPIQKAEF--APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVE----------EKSMERFEVSHDSNFIAIAGN 323 (514)
T ss_pred --Cccceeee--cCCCceEEEecccceEEEEeeccccccccccCCCCcc----------cchhheeEecCCCCeEEEccc
Confidence 78999999 78998 8999999999999999998877766555443 256777888999999999888
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
.|.|.+.... +...+..+ ...+.+..++|+.+++.|++. .+|.|.+||++ ...+++.+. ..-.-.
T Consensus 324 --~G~I~lLhak---T~eli~s~--KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~-~~~~~~rf~------D~G~v~ 389 (514)
T KOG2055|consen 324 --NGHIHLLHAK---TKELITSF--KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLR-QNSCLHRFV------DDGSVH 389 (514)
T ss_pred --CceEEeehhh---hhhhhhee--eeccEEeeEEEecCCcEEEEEcCCceEEEEecC-CcceEEEEe------ecCccc
Confidence 8899888877 55555555 456789999999999988877 99999999999 567777761 111113
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc--ccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~ 347 (432)
=++++.++++ .+||+|+..|.|.|||..+... ..++++.+.. ....|++++|++|++.||.++.
T Consensus 390 gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN-------------Ltt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 390 GTSLCISLNG-SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN-------------LTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred eeeeeecCCC-ceEEeccCcceEEEeccchhhccCCCCchhhhhh-------------hheeeeeeeeCcchhhhhhhhh
Confidence 4678889999 9999999999999999764221 0111222222 2568999999999999987533
Q ss_pred ---CeEEEEecCcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 348 ---MNLKVFRYEPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 348 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
+.+|+-.+.....|.--.. ...-+ . ....+.++....+++.|...|.+.+|.
T Consensus 456 ~~knalrLVHvPS~TVFsNfP~---~n~~v-g-~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 456 VKKNALRLVHVPSCTVFSNFPT---SNTKV-G-HVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred ccccceEEEeccceeeeccCCC---CCCcc-c-ceEEEEecCCCceEEeecCCCceeeEe
Confidence 7888877722222222111 00001 1 111222333344788999999999996
No 111
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.1e-22 Score=166.40 Aligned_cols=275 Identities=15% Similarity=0.176 Sum_probs=202.0
Q ss_pred EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcC
Q 014005 46 YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP 125 (432)
Q Consensus 46 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~ 125 (432)
.|++|++...|.=+++.-.... +. -...|.......+++|. ..|++++.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~-----~~----------~s~~~~l~~lF~~~aH~------------~sitavAV---- 51 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKG-----CT----------DSVKPTLKPLFAFSAHA------------GSITALAV---- 51 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccc-----cc----------cccceeeeccccccccc------------cceeEEEe----
Confidence 3677888877766666432200 00 02233445566788898 99999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc--ceecceeeccceEEEEeecc
Q 014005 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA--HGYHLEWTENMATKIANVGN 203 (432)
Q Consensus 126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~v~i~d~~~ 203 (432)
++.++++|+.|.+|+|||+.... .+..+-.|. +.|+++.|.+... ++.++.. ||.+.+|+..
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~--qlg~ll~Ha-----------gsitaL~F~~~~S~shLlS~sd--DG~i~iw~~~- 115 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRK--QLGILLSHA-----------GSITALKFYPPLSKSHLLSGSD--DGHIIIWRVG- 115 (362)
T ss_pred cceeEeccCCCCcEEEEeccchh--hhcceeccc-----------cceEEEEecCCcchhheeeecC--CCcEEEEEcC-
Confidence 68999999999999999998765 333344444 8999999988875 8888888 9999999999
Q ss_pred cccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcE
Q 014005 204 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 282 (432)
Q Consensus 204 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 282 (432)
...++..+ ++|.+.|+.++.+|.+++.++. .|+.+++||+- .++.-...++ . ..-+.+.|+|.| .+
T Consensus 116 --~W~~~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV-~Gr~a~v~~L------~--~~at~v~w~~~G-d~ 182 (362)
T KOG0294|consen 116 --SWELLKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV-RGRVAFVLNL------K--NKATLVSWSPQG-DH 182 (362)
T ss_pred --CeEEeeee-cccccccceeEecCCCceEEEEcCCceeeeehhh-cCccceeecc------C--CcceeeEEcCCC-CE
Confidence 88999999 8999999999999999987776 99999999997 4544433311 1 223449999999 88
Q ss_pred EEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec---Ccc
Q 014005 283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY---EPV 358 (432)
Q Consensus 283 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~---~~~ 358 (432)
|+.++.+ .|-+|.+.+.++ ...+.. ...+.++.|-..+ +|++| +++.|.+||. .++
T Consensus 183 F~v~~~~-~i~i~q~d~A~v----~~~i~~--------------~~r~l~~~~l~~~-~L~vG~d~~~i~~~D~ds~~~~ 242 (362)
T KOG0294|consen 183 FVVSGRN-KIDIYQLDNASV----FREIEN--------------PKRILCATFLDGS-ELLVGGDNEWISLKDTDSDTPL 242 (362)
T ss_pred EEEEecc-EEEEEecccHhH----hhhhhc--------------cccceeeeecCCc-eEEEecCCceEEEeccCCCccc
Confidence 8877766 689999987664 233333 2456777777554 55555 6699999999 677
Q ss_pred eeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccCCee
Q 014005 359 MTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAGMDS 409 (432)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~ 409 (432)
..+..|+. +.+-...+.+....+++|.+.||.|+||+..++.
T Consensus 243 ~~~~AH~~---------RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 243 TEFLAHEN---------RVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred eeeecchh---------heeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 88888874 3232223334445689999999999999966553
No 112
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.6e-24 Score=180.71 Aligned_cols=259 Identities=13% Similarity=0.134 Sum_probs=198.0
Q ss_pred cchhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccc
Q 014005 3 LNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMD 82 (432)
Q Consensus 3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 82 (432)
.++..+.....|.++|.-. ......|.+.|..|.++. ..+++++.|.+|+.|.++..-
T Consensus 83 aSGs~DG~VkiWnlsqR~~---~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p----------------- 140 (433)
T KOG0268|consen 83 ASGSCDGEVKIWNLSQREC---IRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPP----------------- 140 (433)
T ss_pred hccccCceEEEEehhhhhh---hheeecccCceeeEEecc--cceEEecCCcceeeeeccCCc-----------------
Confidence 3456678889999997322 123346888999999987 568899999999999987731
Q ss_pred ccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccc
Q 014005 83 FTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS 162 (432)
Q Consensus 83 ~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 162 (432)
..++.+. ..+..|.- +..+..++|++. .|.|||....... ..+....
T Consensus 141 -----------~~tilg~-------------s~~~gIdh--~~~~~~FaTcGe--~i~IWD~~R~~Pv--~smswG~--- 187 (433)
T KOG0268|consen 141 -----------LHTILGK-------------SVYLGIDH--HRKNSVFATCGE--QIDIWDEQRDNPV--SSMSWGA--- 187 (433)
T ss_pred -----------ceeeecc-------------cccccccc--ccccccccccCc--eeeecccccCCcc--ceeecCC---
Confidence 2344443 34556665 455678888875 5999999766533 3333333
Q ss_pred cccccccccccccccCCCCCcceecce-eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe
Q 014005 163 SENTLLAEKNFMNEHNPPSFAHGYHLE-WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR 240 (432)
Q Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~ 240 (432)
..|.++.|+|....++.++ . |+.+.+||++ ...+++.+ -.+..-+.|+|+|++-.+++| .|..
T Consensus 188 --------Dti~svkfNpvETsILas~~s--DrsIvLyD~R---~~~Pl~KV--i~~mRTN~IswnPeafnF~~a~ED~n 252 (433)
T KOG0268|consen 188 --------DSISSVKFNPVETSILASCAS--DRSIVLYDLR---QASPLKKV--ILTMRTNTICWNPEAFNFVAANEDHN 252 (433)
T ss_pred --------CceeEEecCCCcchheeeecc--CCceEEEecc---cCCcccee--eeeccccceecCccccceeecccccc
Confidence 6788999999987766554 5 9999999999 66666654 234467889999988888899 9999
Q ss_pred EEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCc
Q 014005 241 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK 320 (432)
Q Consensus 241 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~ 320 (432)
++.+|++.-..++... .+|.+.|.+++|+|.| +-|++|+.|.+|+||..+.+.- ...+..
T Consensus 253 lY~~DmR~l~~p~~v~-------~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~S----RdiYht-------- 312 (433)
T KOG0268|consen 253 LYTYDMRNLSRPLNVH-------KDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHS----RDIYHT-------- 312 (433)
T ss_pred ceehhhhhhcccchhh-------cccceeEEEeccCCCc-chhccccccceEEEeecCCCcc----hhhhhH--------
Confidence 9999999666676665 8999999999999999 9999999999999999987653 111111
Q ss_pred cceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 321 SFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 321 ~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
.....|.++.||.|.+|+++|+| +.|++|.-
T Consensus 313 ----kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 313 ----KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred ----hhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 01357999999999999999977 99999988
No 113
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=7.4e-25 Score=199.22 Aligned_cols=237 Identities=19% Similarity=0.301 Sum_probs=202.1
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..|...|.|+..-..++.+++|+.|..+-+|.+.... .+..+.+|+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~---------------------------~i~S~~~he------- 70 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN---------------------------AITSLTGHE------- 70 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCc---------------------------hhheeeccC-------
Confidence 3678899999988888999999999999999987644 235688999
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..|.++.| +++..+++.|+.+|+|++||++..+ .+..+.+|. ..+..+.|+|-+.|.+.|
T Consensus 71 -----spIeSl~f--~~~E~LlaagsasgtiK~wDleeAk--~vrtLtgh~-----------~~~~sv~f~P~~~~~a~g 130 (825)
T KOG0267|consen 71 -----SPIESLTF--DTSERLLAAGSASGTIKVWDLEEAK--IVRTLTGHL-----------LNITSVDFHPYGEFFASG 130 (825)
T ss_pred -----Ccceeeec--CcchhhhcccccCCceeeeehhhhh--hhhhhhccc-----------cCcceeeeccceEEeccc
Confidence 99999999 8888999999999999999999776 333455555 678889999999999888
Q ss_pred eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
+. |+.+++||.+ ...|...+ .+|...+.+++|+|+|++++.| +|.++++||.. .++.+..| ..|.
T Consensus 131 St--dtd~~iwD~R---k~Gc~~~~-~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~-agk~~~ef-------~~~e 196 (825)
T KOG0267|consen 131 ST--DTDLKIWDIR---KKGCSHTY-KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT-AGKLSKEF-------KSHE 196 (825)
T ss_pred cc--cccceehhhh---ccCceeee-cCCcceeEEEeecCCCceeeccCCcceeeeeccc-cccccccc-------cccc
Confidence 88 9999999999 77899999 7899999999999999999999 99999999998 67777765 8899
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~ 347 (432)
..+..+.|+|.. -++++|+.|+++++||+++-++ +.....- ...|.+.+|+|+|+.+++|..
T Consensus 197 ~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~----I~s~~~~-------------~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 197 GKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEV----ISSGKPE-------------TDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred ccccccccCchh-hhhccCCCCceeeeeccceeEE----eeccCCc-------------cCCceeeeecCCceeeecCch
Confidence 999999999998 9999999999999999997654 2222221 468999999999999999865
Q ss_pred CeEE
Q 014005 348 MNLK 351 (432)
Q Consensus 348 ~~i~ 351 (432)
-.+.
T Consensus 259 ~sl~ 262 (825)
T KOG0267|consen 259 ISLS 262 (825)
T ss_pred hhhh
Confidence 3333
No 114
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.5e-22 Score=165.92 Aligned_cols=252 Identities=15% Similarity=0.207 Sum_probs=180.3
Q ss_pred EEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhc
Q 014005 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (432)
Q Consensus 35 V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (432)
..|+.|++.|.+||+|+.||.|.|||+.+.... ..+.+|. .
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia---------------------------r~lsaH~------------~ 66 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA---------------------------RMLSAHV------------R 66 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh---------------------------hhhhccc------------c
Confidence 789999999999999999999999999886533 6788999 9
Q ss_pred ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc
Q 014005 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (432)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 194 (432)
+|.+++| +++|++|+|++.|..|++||+..|.+.....+. ++|..+.|+|........... +.
T Consensus 67 pi~sl~W--S~dgr~LltsS~D~si~lwDl~~gs~l~rirf~--------------spv~~~q~hp~k~n~~va~~~-~~ 129 (405)
T KOG1273|consen 67 PITSLCW--SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD--------------SPVWGAQWHPRKRNKCVATIM-EE 129 (405)
T ss_pred ceeEEEe--cCCCCEeeeecCCceeEEEeccCCCceeEEEcc--------------CccceeeeccccCCeEEEEEe-cC
Confidence 9999999 999999999999999999999988855554443 678888888875544443332 22
Q ss_pred eEEEEeecccccceeeEEeecCCCC----CeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 195 ATKIANVGNSVHARCQKVYPHAHDF----NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 195 ~v~i~d~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
...+-++... ...++. ....+ ...+..|.+.|+++++| ..|.+.++|.+ +.+++..+.+. ....
T Consensus 130 sp~vi~~s~~-~h~~Lp---~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~-t~e~vas~rit------s~~~ 198 (405)
T KOG1273|consen 130 SPVVIDFSDP-KHSVLP---KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE-TLECVASFRIT------SVQA 198 (405)
T ss_pred CcEEEEecCC-ceeecc---CCCccccccccccccccCCCCEEEEecCcceEEEEecc-hheeeeeeeec------hhee
Confidence 2333333310 111211 11111 12233588999999999 99999999999 56676655221 1356
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccc-----cccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC-----DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
|.++.++..| ..|+.-+.|..||.|+++.--.+ ....+.++.- . ....-.+++||.||.|++.
T Consensus 199 IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv----V-------Nk~~Wk~ccfs~dgeYv~a 266 (405)
T KOG1273|consen 199 IKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV----V-------NKLQWKKCCFSGDGEYVCA 266 (405)
T ss_pred eeEEEEeccC-cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH----H-------hhhhhhheeecCCccEEEe
Confidence 8999999999 99999999999999998731100 0001111110 0 0234567899999999998
Q ss_pred eeC--CeEEEEec---CcceeEeecc
Q 014005 345 RDY--MNLKVFRY---EPVMTLSFCG 365 (432)
Q Consensus 345 ~~~--~~i~iwd~---~~~~~~~~~~ 365 (432)
|+. ..++||.- ..++.+.+..
T Consensus 267 ~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 267 GSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred ccccceeEEEEecCCcceeeeecCCc
Confidence 754 89999998 6667666654
No 115
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=7.5e-23 Score=169.21 Aligned_cols=276 Identities=13% Similarity=0.184 Sum_probs=206.7
Q ss_pred CCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCC-----Cccccchhhhcccccc------c-cccC-Cc
Q 014005 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTP-----NQHISRSELEKQMDFT------S-TSHP-EY 91 (432)
Q Consensus 25 ~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~------~-~~~p-~~ 91 (432)
..+-.+|.+.|+|++|++.+.++++++.|++-.||...-.-..+ ..+....+.+..+.-. . +-.| -.
T Consensus 183 L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR 262 (481)
T KOG0300|consen 183 LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR 262 (481)
T ss_pred eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee
Confidence 34445799999999999999999999999999999843221111 1111222222222111 0 1111 23
Q ss_pred ceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccc
Q 014005 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (432)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (432)
.++..+.+|. ..|.+..| -..|+.+++++.|++..+||++++.+. ..+.+|. .
T Consensus 263 vPl~~ltgH~------------~vV~a~dW--L~gg~Q~vTaSWDRTAnlwDVEtge~v--~~LtGHd-----------~ 315 (481)
T KOG0300|consen 263 VPLMRLTGHR------------AVVSACDW--LAGGQQMVTASWDRTANLWDVETGEVV--NILTGHD-----------S 315 (481)
T ss_pred eeeeeeeccc------------cceEehhh--hcCcceeeeeeccccceeeeeccCcee--ccccCcc-----------h
Confidence 4557788998 99999999 568999999999999999999999843 3445555 6
Q ss_pred ccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC
Q 014005 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD 250 (432)
Q Consensus 172 ~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~ 250 (432)
....+.-+|...++++.+. |.+.++||++. ....+..| .+|...|++..|+.+. .+++| +|.+|++||++++.
T Consensus 316 ELtHcstHptQrLVvTsSr--DtTFRLWDFRe--aI~sV~VF-QGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 316 ELTHCSTHPTQRLVVTSSR--DTTFRLWDFRE--AIQSVAVF-QGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred hccccccCCcceEEEEecc--CceeEeccchh--hcceeeee-cccccceeEEEEecCC-ceeecCCCceEEEeeecccc
Confidence 7788888999999999998 99999999983 55667777 8999999999999776 57777 99999999999877
Q ss_pred ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecce
Q 014005 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (432)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v 330 (432)
..+.++ ...++++.++.+..+ .++|.--.+..|++||+...++..-+...-++| ...|
T Consensus 390 splATI--------RtdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgH-------------rRMV 447 (481)
T KOG0300|consen 390 SPLATI--------RTDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGH-------------RRMV 447 (481)
T ss_pred Ccceee--------ecCCccceeEeecCC-ceEEeccCCceEEEEecCCCccccCCccccccc-------------ceee
Confidence 777765 345678999999887 899998889999999998655421112233454 7899
Q ss_pred eEEEEcCCC---CEEEEeeCCeEEEEec
Q 014005 331 SDIKFANDG---QHLLSRDYMNLKVFRY 355 (432)
Q Consensus 331 ~~~~~s~dg---~~l~s~~~~~i~iwd~ 355 (432)
.+++|..+. .++.+|-|..+.=|++
T Consensus 448 ~c~AW~eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 448 TCCAWLEEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred eeeeccccCcccccccccccceeeeeEe
Confidence 999998763 4455567789999987
No 116
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.4e-23 Score=189.86 Aligned_cols=259 Identities=14% Similarity=0.227 Sum_probs=193.6
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
.....+|+.+++-..++.++.. .++|+.++..... ..+...+.+.+..+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~-----------------------~~~~~~~k~kqn~~------- 87 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFS-----------------------EKCNHRFKTKQNKF------- 87 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCC-----------------------cceeeeccccccee-------
Confidence 4456778888888888888775 7888887654321 11111122221000
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc-ceeeeeecCCCCccccccccccccccccccCCCCC-cceecce
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGYHLE 189 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~ 189 (432)
..+..+.|. .-+.++||+++..|.|.+||+... ..+.+..+..|. -.+..+.|++.. ..+++|+
T Consensus 88 --~S~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~-----------Rs~~~ldfh~tep~iliSGS 153 (839)
T KOG0269|consen 88 --YSAADVKWG-QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHE-----------RSANKLDFHSTEPNILISGS 153 (839)
T ss_pred --eehhhcccc-cchhhhheeecCCCcEEEEecCccccchhhhHhhhhc-----------cceeeeeeccCCccEEEecC
Confidence 456678885 456789999999999999999762 222333444455 778899998875 5667788
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
. ||.|++||++ ..+...++ .+....|..+.|+|. +..|+++ +.|.+.+||++...++...+ ..|.
T Consensus 154 Q--Dg~vK~~DlR---~~~S~~t~-~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~-------~AH~ 220 (839)
T KOG0269|consen 154 Q--DGTVKCWDLR---SKKSKSTF-RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKL-------TAHN 220 (839)
T ss_pred C--CceEEEEeee---cccccccc-cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHh-------hccc
Confidence 8 9999999999 56666666 677889999999995 6778888 99999999999888877755 8999
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE-EEEe-
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSR- 345 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~-l~s~- 345 (432)
++|.++.|+|++ .+||+||.|+.|+|||+.+++... +.++.. ..+|..++|-|+.++ ||++
T Consensus 221 GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~--~~tInT--------------iapv~rVkWRP~~~~hLAtcs 283 (839)
T KOG0269|consen 221 GPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKP--KHTINT--------------IAPVGRVKWRPARSYHLATCS 283 (839)
T ss_pred CceEEEeecCCC-ceeeecCCCccEEEEeccCCCccc--eeEEee--------------cceeeeeeeccCccchhhhhh
Confidence 999999999988 999999999999999999765421 344444 579999999998765 5553
Q ss_pred --eCCeEEEEec----CcceeEeecc
Q 014005 346 --DYMNLKVFRY----EPVMTLSFCG 365 (432)
Q Consensus 346 --~~~~i~iwd~----~~~~~~~~~~ 365 (432)
.|-.|+|||+ -|..++.-|.
T Consensus 284 mv~dtsV~VWDvrRPYIP~~t~~eH~ 309 (839)
T KOG0269|consen 284 MVVDTSVHVWDVRRPYIPYATFLEHT 309 (839)
T ss_pred ccccceEEEEeeccccccceeeeccC
Confidence 4589999999 4555665554
No 117
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1.7e-22 Score=183.14 Aligned_cols=315 Identities=16% Similarity=0.197 Sum_probs=219.7
Q ss_pred ccccCCCcEEEEEEcCCCC---EEEEecccceEEEEEecCCcCCCCccccchhhhcccc-ccccccCCccee--------
Q 014005 27 EELQDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMD-FTSTSHPEYRYK-------- 94 (432)
Q Consensus 27 ~~~~h~~~V~~~~fsp~g~---~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~-------- 94 (432)
+.-+|++.|.+++|...+. +||++|.|..||||.+.-..... ..++.+. .+..-.|.....
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~-------~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDED-------SNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcc-------ccccccccccccCCceeeeeeeEEEEEe
Confidence 3558999999999987654 78999999999999986543211 1111110 000111111111
Q ss_pred --eeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc--ce---eeeeecCCCCcccccccc
Q 014005 95 --TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ--KV---KKIKEMDHFPFVSSENTL 167 (432)
Q Consensus 95 --~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~--~~---~~~~~~~~~~~~~~~~~~ 167 (432)
..+.||+ +.|+++.| +|.+..|++++.|+++.+|..... -. .++..+.+..
T Consensus 259 ~eall~GHe------------DWV~sv~W--~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a-------- 316 (764)
T KOG1063|consen 259 FEALLMGHE------------DWVYSVWW--HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSA-------- 316 (764)
T ss_pred hhhhhcCcc------------cceEEEEE--ccchhhheecccCcceEEEecCCccceEEEEEEeecccccc--------
Confidence 2345888 99999999 889999999999999999998654 22 2333443333
Q ss_pred ccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 014005 168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL 246 (432)
Q Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~ 246 (432)
+......|++++..++.-+. .|..++|.............. .+|.+.|..++|+|.|.++++. .|.+-|+|-.
T Consensus 317 ---~GF~g~lw~~n~~~ii~~g~--~Gg~hlWkt~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~ 390 (764)
T KOG1063|consen 317 ---GGFWGGLWSPNSNVIIAHGR--TGGFHLWKTKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFAR 390 (764)
T ss_pred ---cceeeEEEcCCCCEEEEecc--cCcEEEEeccCccceeecccc-ccccccceeeeecCCCCEEEEeccccceeeecc
Confidence 67888999999998888888 889999984432233333344 8999999999999999999988 8888877533
Q ss_pred C-------------------------------------------------------------------------------
Q 014005 247 E------------------------------------------------------------------------------- 247 (432)
Q Consensus 247 ~------------------------------------------------------------------------------- 247 (432)
-
T Consensus 391 wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLS 470 (764)
T KOG1063|consen 391 WGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLS 470 (764)
T ss_pred cccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccccc
Confidence 0
Q ss_pred ---------CCC-c---eeeEe--------ecCC--------------CCcCCCCcceEEEEEcCCCCcEEEEEeCCC--
Q 014005 248 ---------ISD-Q---CFNIV--------DMKP--------------SNMDDLTEVITSAEFHPIYCNLLAYSSSRG-- 290 (432)
Q Consensus 248 ---------~~~-~---~~~~~--------~~~~--------------~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-- 290 (432)
.++ . +.++. ..+| ..+-+|...|.+++.+|++ +++|+++...
T Consensus 471 nKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ 549 (764)
T KOG1063|consen 471 NKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLK 549 (764)
T ss_pred CCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCc
Confidence 000 0 00000 0000 1234788899999999999 9999988543
Q ss_pred ---eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec----C---cce
Q 014005 291 ---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY----E---PVM 359 (432)
Q Consensus 291 ---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~----~---~~~ 359 (432)
.|++|+..+... .+.+.+| .-.|+.++|||||+||++. -|.++.+|.. . ...
T Consensus 550 ehAvI~lw~t~~W~~----~~~L~~H-------------sLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa 612 (764)
T KOG1063|consen 550 EHAVIRLWNTANWLQ----VQELEGH-------------SLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFA 612 (764)
T ss_pred cceEEEEEeccchhh----hheeccc-------------ceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhc
Confidence 699999988765 5778887 7899999999999999985 6699999998 1 122
Q ss_pred eEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 360 TLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
..+.|....|-.++. ....+.+|+|.|..+.+|..
T Consensus 613 ~~k~HtRIIWdcsW~-----------pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 613 CLKAHTRIIWDCSWS-----------PDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred cccccceEEEEcccC-----------cccceeEEecCCceEEEEec
Confidence 244555443333332 12235899999999999994
No 118
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1e-22 Score=167.27 Aligned_cols=260 Identities=14% Similarity=0.216 Sum_probs=186.0
Q ss_pred hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005 6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS 85 (432)
Q Consensus 6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (432)
.=+...+.|.+... |.-.......|.++|.+++|+-+|..+++|+.|+.+++||+.+++.
T Consensus 47 SWD~tVR~wevq~~-g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~------------------- 106 (347)
T KOG0647|consen 47 SWDGTVRIWEVQNS-GQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV------------------- 106 (347)
T ss_pred ccCCceEEEEEecC-CcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-------------------
Confidence 33455666777653 3333444567899999999999999999999999999999999864
Q ss_pred cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccc
Q 014005 86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN 165 (432)
Q Consensus 86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 165 (432)
.++..|. ++|.++.|.+....+.|+||+.|++|+.||.+.........+.
T Consensus 107 ---------~~v~~Hd------------~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--------- 156 (347)
T KOG0647|consen 107 ---------SQVAAHD------------APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--------- 156 (347)
T ss_pred ---------eeeeecc------------cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc---------
Confidence 4788898 9999999976555568999999999999999876633332222
Q ss_pred ccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEE
Q 014005 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW 244 (432)
Q Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lw 244 (432)
+.++++..- ..+++.+.. +..|.+|++++..+.. +.......-.++|++..++....+.| -+|.+.+.
T Consensus 157 -----eRvYa~Dv~--~pm~vVata--~r~i~vynL~n~~te~--k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq 225 (347)
T KOG0647|consen 157 -----ERVYAADVL--YPMAVVATA--ERHIAVYNLENPPTEF--KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQ 225 (347)
T ss_pred -----ceeeehhcc--CceeEEEec--CCcEEEEEcCCCcchh--hhhcCcccceeeEEEEEecCCceEeeeecceEEEE
Confidence 334433332 233444444 8899999997542211 11113345578899998888888988 89999999
Q ss_pred eCCCCCceeeEeecCCCC----cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCc
Q 014005 245 NLEISDQCFNIVDMKPSN----MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK 320 (432)
Q Consensus 245 d~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~ 320 (432)
.++.... ..-+..+... ..+.--.|++++|+|.. ..|++++.||++.+||-..... ++..+.|
T Consensus 226 ~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~k----Lk~s~~~------- 292 (347)
T KOG0647|consen 226 YIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDARTK----LKTSETH------- 292 (347)
T ss_pred ecCCCCc-cCceeEEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhhh----hhccCcC-------
Confidence 8883222 2222111111 01112368999999998 8999999999999999776554 5666665
Q ss_pred cceeeeecceeEEEEcCCCCEEEEe
Q 014005 321 SFFTEIIASISDIKFANDGQHLLSR 345 (432)
Q Consensus 321 ~~~~~~~~~v~~~~~s~dg~~l~s~ 345 (432)
..+|++.+|+.+|.++|-+
T Consensus 293 ------~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 293 ------PQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ------CCccceeEecCCCCEEEEE
Confidence 7899999999999998764
No 119
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.4e-23 Score=192.48 Aligned_cols=240 Identities=15% Similarity=0.245 Sum_probs=178.5
Q ss_pred EEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 35 VSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 35 V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
+..|.|+. ..++|||++..|.|.+||+.... ..+.+..|..|+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~------------------------rnk~l~~f~EH~------------ 133 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSI------------------------RNKLLTVFNEHE------------ 133 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccc------------------------cchhhhHhhhhc------------
Confidence 34456654 35789999999999999998721 112335788898
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc-ceecceeec
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHLEWTE 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~ 192 (432)
..++++.|+ +....+|++|+.||.|++||++..+...... .. ...|+++.|+|... .++++..
T Consensus 134 Rs~~~ldfh-~tep~iliSGSQDg~vK~~DlR~~~S~~t~~--~n-----------SESiRDV~fsp~~~~~F~s~~d-- 197 (839)
T KOG0269|consen 134 RSANKLDFH-STEPNILISGSQDGTVKCWDLRSKKSKSTFR--SN-----------SESIRDVKFSPGYGNKFASIHD-- 197 (839)
T ss_pred cceeeeeec-cCCccEEEecCCCceEEEEeeeccccccccc--cc-----------chhhhceeeccCCCceEEEecC--
Confidence 999999996 3556789999999999999998776333222 22 27899999999854 4444555
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceE
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (432)
+|.+++||++. ..+|...+ .+|.+.+.|+.|+|++.+||+| .|+.|+|||+. ..+..... .-....++.
T Consensus 198 sG~lqlWDlRq--p~r~~~k~-~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t-~~~~~~~~------tInTiapv~ 267 (839)
T KOG0269|consen 198 SGYLQLWDLRQ--PDRCEKKL-TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT-DSRAKPKH------TINTIAPVG 267 (839)
T ss_pred CceEEEeeccC--chhHHHHh-hcccCceEEEeecCCCceeeecCCCccEEEEecc-CCCcccee------EEeecceee
Confidence 88999999985 45666777 8999999999999999999999 99999999998 33221111 023346799
Q ss_pred EEEEcCCCCcEEEEEe--CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC-CCCEEEEee-C
Q 014005 272 SAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-Y 347 (432)
Q Consensus 272 ~~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~s~~-~ 347 (432)
+++|-|....+||+++ .|-.|+|||++..-++ ..++..| ...++.++|.. |...|.+++ |
T Consensus 268 rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP---~~t~~eH-------------~~~vt~i~W~~~d~~~l~s~sKD 331 (839)
T KOG0269|consen 268 RVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP---YATFLEH-------------TDSVTGIAWDSGDRINLWSCSKD 331 (839)
T ss_pred eeeeccCccchhhhhhccccceEEEEeecccccc---ceeeecc-------------CccccceeccCCCceeeEeecCc
Confidence 9999999877888887 6779999999954443 5677776 88999999976 333444543 3
Q ss_pred CeEEE
Q 014005 348 MNLKV 352 (432)
Q Consensus 348 ~~i~i 352 (432)
+++..
T Consensus 332 ~tv~q 336 (839)
T KOG0269|consen 332 GTVLQ 336 (839)
T ss_pred cHHHH
Confidence 55443
No 120
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=1.2e-22 Score=184.83 Aligned_cols=258 Identities=16% Similarity=0.185 Sum_probs=198.2
Q ss_pred cCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecC
Q 014005 21 GERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH 100 (432)
Q Consensus 21 ~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h 100 (432)
.+++......-.-.+.|++.+|+|++||+|..-|+++||++...+.. ..+.+|
T Consensus 448 fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~---------------------------~~~eAH 500 (1080)
T KOG1408|consen 448 FDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT---------------------------CFMEAH 500 (1080)
T ss_pred ccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhh---------------------------hheecc
Confidence 35666666667778999999999999999999999999999876533 567889
Q ss_pred CccccccchhhhhcceeEEEEEEcCC--CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccC
Q 014005 101 EPEFDYLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN 178 (432)
Q Consensus 101 ~~~~~~~~~~~~~~~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 178 (432)
+ ..|.|+.|+ .|+ .++|++++.|+.|.++|+...- ..+..+..|. ..|+++.|
T Consensus 501 e------------sEilcLeyS-~p~~~~kLLASasrdRlIHV~Dv~rny-~l~qtld~HS-----------ssITsvKF 555 (1080)
T KOG1408|consen 501 E------------SEILCLEYS-FPVLTNKLLASASRDRLIHVYDVKRNY-DLVQTLDGHS-----------SSITSVKF 555 (1080)
T ss_pred c------------ceeEEEeec-CchhhhHhhhhccCCceEEEEeccccc-chhhhhcccc-----------cceeEEEE
Confidence 8 999999995 232 4689999999999999997542 2334445555 78888888
Q ss_pred CCCC--cceecceeeccceEEEEeecccccceeeEEe-ecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceee
Q 014005 179 PPSF--AHGYHLEWTENMATKIANVGNSVHARCQKVY-PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN 254 (432)
Q Consensus 179 ~~~~--~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~ 254 (432)
...+ ..+++++. |..+.+-..+....+.....- ..-....++.+++.|+.++++++ .|..|+|||++ .++..+
T Consensus 556 a~~gln~~MiscGA--DksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~-sgKq~k 632 (1080)
T KOG1408|consen 556 ACNGLNRKMISCGA--DKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIE-SGKQVK 632 (1080)
T ss_pred eecCCceEEEeccC--chhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecc-ccceee
Confidence 7766 34444443 555544333211111111100 01123568999999999999999 99999999999 677777
Q ss_pred EeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEE
Q 014005 255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 334 (432)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~ 334 (432)
.| ..-.+|.+..-.+..+|.| .++|+...|+++.++|.-+|+. +..+.+| ...|+.+.
T Consensus 633 ~F----Kgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgEc----vA~m~GH-------------sE~VTG~k 690 (1080)
T KOG1408|consen 633 SF----KGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGEC----VAQMTGH-------------SEAVTGVK 690 (1080)
T ss_pred ee----cccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccchh----hhhhcCc-------------chheeeee
Confidence 66 1225677788899999999 9999999999999999999986 6888897 88999999
Q ss_pred EcCCCCEEEEe-eCCeEEEEec
Q 014005 335 FANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 335 ~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
|.+|-+.|++. +||+|.+|.+
T Consensus 691 F~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 691 FLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred ecccchhheeecCCceEEEEEC
Confidence 99999999984 7799999999
No 121
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=1.3e-21 Score=158.18 Aligned_cols=212 Identities=13% Similarity=0.186 Sum_probs=179.7
Q ss_pred eeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccccc
Q 014005 96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (432)
Q Consensus 96 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (432)
.++||+ .+++.+.| +.+|.+|++++.|.++.+|-...|+ ++..+.+|. +.|.+
T Consensus 5 ~l~GHE------------RplTqiKy--N~eGDLlFscaKD~~~~vw~s~nGe--rlGty~GHt-----------GavW~ 57 (327)
T KOG0643|consen 5 LLQGHE------------RPLTQIKY--NREGDLLFSCAKDSTPTVWYSLNGE--RLGTYDGHT-----------GAVWC 57 (327)
T ss_pred ccccCc------------cccceEEe--cCCCcEEEEecCCCCceEEEecCCc--eeeeecCCC-----------ceEEE
Confidence 578898 99999999 8999999999999999999987777 777788888 99999
Q ss_pred ccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-----CCeEEEEeCCCC
Q 014005 176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-----DLRINLWNLEIS 249 (432)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-----d~~i~lwd~~~~ 249 (432)
+..+.+...+++|+. |.++++||++ +++++..+ .-...|..+.|+++|++++.. + .+.|.++|++..
T Consensus 58 ~Did~~s~~liTGSA--D~t~kLWDv~---tGk~la~~--k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~ 130 (327)
T KOG0643|consen 58 CDIDWDSKHLITGSA--DQTAKLWDVE---TGKQLATW--KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDD 130 (327)
T ss_pred EEecCCcceeeeccc--cceeEEEEcC---CCcEEEEe--ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCC
Confidence 999999999999998 9999999999 88888887 456789999999999988865 3 467899999832
Q ss_pred C------ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccce
Q 014005 250 D------QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (432)
Q Consensus 250 ~------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~ 323 (432)
. .++..+ ..+.+.++.+-|.|-+ ..|++|..||.|.+||+++|+.. +..-+.|
T Consensus 131 ~~~~~s~ep~~kI-------~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~---v~s~~~h---------- 189 (327)
T KOG0643|consen 131 SSDIDSEEPYLKI-------PTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKEL---VDSDEEH---------- 189 (327)
T ss_pred hhhhcccCceEEe-------cCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCcee---eechhhh----------
Confidence 2 223322 5667889999999999 99999999999999999998753 4555666
Q ss_pred eeeecceeEEEEcCCCCEEEEee-CCeEEEEec---CcceeEeecc
Q 014005 324 TEIIASISDIKFANDGQHLLSRD-YMNLKVFRY---EPVMTLSFCG 365 (432)
Q Consensus 324 ~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~~~~~~ 365 (432)
...|+++++++|..++++++ |.+-++||+ ..++++....
T Consensus 190 ---~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~ 232 (327)
T KOG0643|consen 190 ---SSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER 232 (327)
T ss_pred ---ccccccccccCCcceEEecccCccceeeeccceeeEEEeeecc
Confidence 78999999999999999985 499999999 5666665544
No 122
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.3e-21 Score=161.36 Aligned_cols=240 Identities=18% Similarity=0.209 Sum_probs=173.7
Q ss_pred CccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 26 ~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
...+.|..++.+++|.++ ..+++|+.||.|+.+|++++... .+..|.
T Consensus 48 ~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~----------------------------~igth~---- 94 (323)
T KOG1036|consen 48 KLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED----------------------------QIGTHD---- 94 (323)
T ss_pred hhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce----------------------------eeccCC----
Confidence 345789999999999874 46899999999999999998643 677788
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 185 (432)
..|.+|.+ .+....+++|+.|++|++||.+....... .. ....|.++ +-.+..+
T Consensus 95 --------~~i~ci~~--~~~~~~vIsgsWD~~ik~wD~R~~~~~~~--~d------------~~kkVy~~--~v~g~~L 148 (323)
T KOG1036|consen 95 --------EGIRCIEY--SYEVGCVISGSWDKTIKFWDPRNKVVVGT--FD------------QGKKVYCM--DVSGNRL 148 (323)
T ss_pred --------CceEEEEe--eccCCeEEEcccCccEEEEeccccccccc--cc------------cCceEEEE--eccCCEE
Confidence 99999999 56677899999999999999986331111 10 11334433 3345667
Q ss_pred ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC---ceeeEeecCCC
Q 014005 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD---QCFNIVDMKPS 261 (432)
Q Consensus 186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~---~~~~~~~~~~~ 261 (432)
+.|+. +..+.+||++...... +.....-...+.|++..|++.-++++ -||.|.+=.++... .....|...+.
T Consensus 149 vVg~~--~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~ 224 (323)
T KOG1036|consen 149 VVGTS--DRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRL 224 (323)
T ss_pred EEeec--CceEEEEEcccccchh--hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeec
Confidence 77776 8899999998642222 22124556789999999988778877 89999886666221 11112211111
Q ss_pred CcCC--CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC
Q 014005 262 NMDD--LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (432)
Q Consensus 262 ~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg 339 (432)
...+ .--+|++++|||-. ..||||+.||.|.+||+...+. ++.+..- ...|.+++|+.||
T Consensus 225 ~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rKr----l~q~~~~-------------~~SI~slsfs~dG 286 (323)
T KOG1036|consen 225 SEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRKR----LKQLAKY-------------ETSISSLSFSMDG 286 (323)
T ss_pred ccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchhh----hhhccCC-------------CCceEEEEeccCC
Confidence 1111 12379999999998 9999999999999999998765 4555552 4679999999999
Q ss_pred CEEEEee
Q 014005 340 QHLLSRD 346 (432)
Q Consensus 340 ~~l~s~~ 346 (432)
..||.++
T Consensus 287 ~~LAia~ 293 (323)
T KOG1036|consen 287 SLLAIAS 293 (323)
T ss_pred CeEEEEe
Confidence 9999875
No 123
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.1e-22 Score=172.35 Aligned_cols=247 Identities=15% Similarity=0.150 Sum_probs=190.1
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
.+.|.|++-+|+|.+|+.|+..|.|.+|.+.++.++ ..+.+|-
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL---------------------------~v~~aHY---------- 123 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILL---------------------------NVLSAHY---------- 123 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHH---------------------------HHHHhhc----------
Confidence 678999999999999999989999999999999865 5677888
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccC-------cceeeeeecCCCCccccccccccccccccccCCCC--C
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-------QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS--F 182 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~ 182 (432)
..|+++.| +.||.+|+||+.||.|.+|++.. ...+.+..++.|. -+|.++...+. .
T Consensus 124 --Q~ITcL~f--s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht-----------lsITDl~ig~Gg~~ 188 (476)
T KOG0646|consen 124 --QSITCLKF--SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT-----------LSITDLQIGSGGTN 188 (476)
T ss_pred --cceeEEEE--eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc-----------ceeEEEEecCCCcc
Confidence 89999999 89999999999999999998742 2344555666666 67777766554 4
Q ss_pred cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC-cee----eEe
Q 014005 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCF----NIV 256 (432)
Q Consensus 183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~-~~~----~~~ 256 (432)
..+++.+. |.++++||+. .+..+.++ .-+..+.+++.+|.++.+..| .+|.|.+.++.... +.. +..
T Consensus 189 ~rl~TaS~--D~t~k~wdlS---~g~LLlti--~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~ 261 (476)
T KOG0646|consen 189 ARLYTASE--DRTIKLWDLS---LGVLLLTI--TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGR 261 (476)
T ss_pred ceEEEecC--CceEEEEEec---cceeeEEE--ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccc
Confidence 56666666 9999999998 55666655 456789999999999999999 99999998876222 010 000
Q ss_pred ---ecCCCCcCCCCc--ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeeccee
Q 014005 257 ---DMKPSNMDDLTE--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (432)
Q Consensus 257 ---~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~ 331 (432)
..+...+.+|.+ .|+|++++-|| .+|++|+.||.|.|||+.+.+. ++++..- .++|+
T Consensus 262 ~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q~----iRtl~~~-------------kgpVt 323 (476)
T KOG0646|consen 262 HEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQC----IRTLQTS-------------KGPVT 323 (476)
T ss_pred ccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHHH----HHHHhhh-------------ccccc
Confidence 001123467877 99999999999 9999999999999999998765 5666621 57899
Q ss_pred EEEEcCCCCEEEEeeC--CeEEEEec
Q 014005 332 DIKFANDGQHLLSRDY--MNLKVFRY 355 (432)
Q Consensus 332 ~~~~s~dg~~l~s~~~--~~i~iwd~ 355 (432)
.+.+.|--+-...+.+ ..+-.|++
T Consensus 324 nL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 324 NLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred eeEeeccccceecccccCccCCchHh
Confidence 9999775444433322 55566666
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=1.7e-22 Score=176.64 Aligned_cols=257 Identities=12% Similarity=0.188 Sum_probs=203.5
Q ss_pred cchhhhhhhhcCCCCCccc---cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccc
Q 014005 11 SLEWKCSQAFGERNPDEEL---QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTS 87 (432)
Q Consensus 11 ~~~w~~~~~~~~~~~~~~~---~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (432)
...|.++|. +.+.....+ ...+.|.++...|||+-|++|+.-.++.|||+......
T Consensus 442 VKVWdis~p-g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr-------------------- 500 (705)
T KOG0639|consen 442 VKVWDISQP-GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR-------------------- 500 (705)
T ss_pred EEEeeccCC-CCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc--------------------
Confidence 457888876 555544443 34678999999999999999999999999999775421
Q ss_pred cCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccc
Q 014005 88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL 167 (432)
Q Consensus 88 ~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 167 (432)
...++..-. -..+.++. +||.+..++++.||.|.|||+.... .+..+++|+
T Consensus 501 -----ikaeltssa------------paCyALa~--spDakvcFsccsdGnI~vwDLhnq~--~VrqfqGht-------- 551 (705)
T KOG0639|consen 501 -----IKAELTSSA------------PACYALAI--SPDAKVCFSCCSDGNIAVWDLHNQT--LVRQFQGHT-------- 551 (705)
T ss_pred -----hhhhcCCcc------------hhhhhhhc--CCccceeeeeccCCcEEEEEcccce--eeecccCCC--------
Confidence 111222222 34667888 8999999999999999999998766 556677777
Q ss_pred ccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 014005 168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL 246 (432)
Q Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~ 246 (432)
....++..++++..+.+|+. |+.|+.||++ .++.+.. ..-.+.|.++..+|++.++++| .++.+.+...
T Consensus 552 ---DGascIdis~dGtklWTGGl--DntvRcWDlr---egrqlqq--hdF~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 552 ---DGASCIDISKDGTKLWTGGL--DNTVRCWDLR---EGRQLQQ--HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred ---CCceeEEecCCCceeecCCC--ccceeehhhh---hhhhhhh--hhhhhhheecccCCCccceeeecccCcEEEEec
Confidence 89999999999999999999 9999999998 4433332 2446789999999999999999 9999998888
Q ss_pred CCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeee
Q 014005 247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 326 (432)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 326 (432)
.. .+... +.-|.+.|.++.|.+.| +++++.+.|+-+..|.+.-|. ..|+. ++
T Consensus 622 sk-p~kyq--------lhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGa------siFqs-kE----------- 673 (705)
T KOG0639|consen 622 SK-PEKYQ--------LHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGA------SIFQS-KE----------- 673 (705)
T ss_pred CC-cccee--------ecccccEEEEEEecccC-ceeeecCchhhhhhccCcccc------ceeec-cc-----------
Confidence 72 22222 26789999999999999 999999999999999988775 33433 11
Q ss_pred ecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005 327 IASISDIKFANDGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 327 ~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~ 355 (432)
..+|.++..|.|.+||++|+ +....+|.+
T Consensus 674 ~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 57899999999999999984 467777654
No 125
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.6e-20 Score=170.14 Aligned_cols=247 Identities=15% Similarity=0.183 Sum_probs=195.1
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
..+|.|++|+.+.+.||.+-.||.|.||++..+ +-+...+.+++
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~--------------------------w~~~~vi~g~~---------- 68 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN--------------------------WFLEPVIHGPE---------- 68 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCC--------------------------ceeeEEEecCC----------
Confidence 568999999999999999999999999999874 34456777776
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
+..|.+++| . ++..|++.+.+|.|.-||+.+.+.+. .+.... +.|-+++.+|.+..+..|+.
T Consensus 69 -drsIE~L~W--~-e~~RLFS~g~sg~i~EwDl~~lk~~~--~~d~~g-----------g~IWsiai~p~~~~l~Igcd- 130 (691)
T KOG2048|consen 69 -DRSIESLAW--A-EGGRLFSSGLSGSITEWDLHTLKQKY--NIDSNG-----------GAIWSIAINPENTILAIGCD- 130 (691)
T ss_pred -CCceeeEEE--c-cCCeEEeecCCceEEEEecccCceeE--EecCCC-----------cceeEEEeCCccceEEeecC-
Confidence 278999999 4 46688899999999999999887443 343333 78999999999999999988
Q ss_pred ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC-CCcc
Q 014005 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEV 269 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~-~~~~ 269 (432)
||.+...+...+ .-.-.+.+ ...++++.+++|+|++..+++| .||.|++||.. .+..+.+...+...+.. ..--
T Consensus 131 -dGvl~~~s~~p~-~I~~~r~l-~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~-~~~t~~~~~~~~d~l~k~~~~i 206 (691)
T KOG2048|consen 131 -DGVLYDFSIGPD-KITYKRSL-MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK-SGQTLHIITMQLDRLSKREPTI 206 (691)
T ss_pred -CceEEEEecCCc-eEEEEeec-ccccceEEEEEecCCccEEEecccCceEEEEEcC-CCceEEEeeecccccccCCceE
Confidence 886666665522 22223344 4567899999999999999999 99999999999 55555554333333333 3446
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCC
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYM 348 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~ 348 (432)
|+++.|-.++ .|++|...|.|.+||...+.+ ++.+..| .+.|.+++.++++.++.++ -|+
T Consensus 207 VWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTL----iqS~~~h-------------~adVl~Lav~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 207 VWSVLFLRDS--TIASGDSAGTVTFWDSIFGTL----IQSHSCH-------------DADVLALAVADNEDRVFSAGVDP 267 (691)
T ss_pred EEEEEEeecC--cEEEecCCceEEEEcccCcch----hhhhhhh-------------hcceeEEEEcCCCCeEEEccCCC
Confidence 8899998764 799999999999999999887 6888886 8899999999998888775 568
Q ss_pred eEEEEec
Q 014005 349 NLKVFRY 355 (432)
Q Consensus 349 ~i~iwd~ 355 (432)
.|..+..
T Consensus 268 ~ii~~~~ 274 (691)
T KOG2048|consen 268 KIIQYSL 274 (691)
T ss_pred ceEEEEe
Confidence 8777777
No 126
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=2.2e-21 Score=164.01 Aligned_cols=228 Identities=18% Similarity=0.219 Sum_probs=171.4
Q ss_pred CccccCCCcEEEEEEcCCC--CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005 26 DEELQDVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (432)
Q Consensus 26 ~~~~~h~~~V~~~~fsp~g--~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~ 103 (432)
.+.+.|.+.++.+.-++-| .+.|+=+..|.|.||++..... .+......+ ..-..+++.++.+|.
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~---------~l~~~~~~~--~~s~~~Pl~t~~ghk-- 211 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN---------ALSEPGLEV--KDSEFRPLFTFNGHK-- 211 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhh---------hhcCccccc--cccccCceEEecccC--
Confidence 4456778888888887765 4566777889999999865321 111111000 001456778889998
Q ss_pred ccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeee-eecCCCCccccccccccccccccccCCCCC
Q 014005 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (432)
Q Consensus 104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (432)
..=+.|.|+|...| .|++|..-+.|++|...++..+.- ..+..|. ..|.+++|+|..
T Consensus 212 ----------~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~-----------~SVEDLqWSptE 269 (440)
T KOG0302|consen 212 ----------GEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHT-----------KSVEDLQWSPTE 269 (440)
T ss_pred ----------ccceeeeccccccc-ccccCccccceEeeeeccCceeecCccccccc-----------cchhhhccCCcc
Confidence 77889999553344 588998889999999988764321 1122244 789999999985
Q ss_pred c-ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCC--CceeeEeec
Q 014005 183 A-HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--DQCFNIVDM 258 (432)
Q Consensus 183 ~-~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~--~~~~~~~~~ 258 (432)
. .+++++. |+.|+|||++......++.+ +.|.+.|+.|.|+..-.+||+| +||+++|||++.- ++++..+
T Consensus 270 ~~vfaScS~--DgsIrIWDiRs~~~~~~~~~--kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f-- 343 (440)
T KOG0302|consen 270 DGVFASCSC--DGSIRIWDIRSGPKKAAVST--KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF-- 343 (440)
T ss_pred CceEEeeec--CceEEEEEecCCCccceeEe--eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE--
Confidence 5 5566666 99999999997655566655 7899999999999998899999 9999999999832 2344444
Q ss_pred CCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccc
Q 014005 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (432)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 299 (432)
.-|..+|+++.|+|.....|++++.|.+|.|||+.-
T Consensus 344 -----k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 344 -----KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred -----EeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 889999999999998778999999999999999874
No 127
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3.4e-22 Score=178.39 Aligned_cols=285 Identities=16% Similarity=0.237 Sum_probs=201.5
Q ss_pred hcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc-ccccC---------
Q 014005 20 FGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT-STSHP--------- 89 (432)
Q Consensus 20 ~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p--------- 89 (432)
|-......-..|++.|.||+.+|.|.+||+|+.||++|||.+.++..+. ......... ++|.|
T Consensus 388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr-------~~~~d~~I~~vaw~P~~~~~vLAv 460 (733)
T KOG0650|consen 388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVR-------TVQFDSEIRSVAWNPLSDLCVLAV 460 (733)
T ss_pred CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEE-------EEeecceeEEEEecCCCCceeEEE
Confidence 3334444455899999999999999999999999999999999987542 111111000 22222
Q ss_pred ---------------------CcceeeeeecCCccc------ccc------------chhhhhcceeEEEEEEcCCCCEE
Q 014005 90 ---------------------EYRYKTEFQSHEPEF------DYL------------KSLEIEEKINRVRWCAAPNGSMF 130 (432)
Q Consensus 90 ---------------------~~~~~~~~~~h~~~~------~~~------------~~~~~~~~v~~l~~~~s~~~~~l 130 (432)
....+.... +..+ .|. -.+.+...|..+.| +..|.||
T Consensus 461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~--~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtW--HrkGDYl 536 (733)
T KOG0650|consen 461 AVGECVLIVNPIFGDRLEVGPTKELLASAP--NESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTW--HRKGDYL 536 (733)
T ss_pred EecCceEEeCccccchhhhcchhhhhhcCC--CccCCcccceeechhhhhhhccceEEEEecCCccceeee--ecCCceE
Confidence 000000000 0000 011 11234578999999 8999999
Q ss_pred EEEeC---CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccc
Q 014005 131 ILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA 207 (432)
Q Consensus 131 ~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~ 207 (432)
++... ...|.|.++.....+. .+... .+.+.++.|+|...++..++ ...|++||+. ..
T Consensus 537 atV~~~~~~~~VliHQLSK~~sQ~--PF~ks-----------kG~vq~v~FHPs~p~lfVaT---q~~vRiYdL~---kq 597 (733)
T KOG0650|consen 537 ATVMPDSGNKSVLIHQLSKRKSQS--PFRKS-----------KGLVQRVKFHPSKPYLFVAT---QRSVRIYDLS---KQ 597 (733)
T ss_pred EEeccCCCcceEEEEecccccccC--chhhc-----------CCceeEEEecCCCceEEEEe---ccceEEEehh---HH
Confidence 99754 4678999987665332 12112 27789999999999988877 4789999997 44
Q ss_pred eeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEE
Q 014005 208 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 286 (432)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 286 (432)
..++.+ ......|..++++|.|..|+.| .|+.+..+|++...+..+.+ .-|...+++++||+.- .+|++|
T Consensus 598 elvKkL-~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~l-------r~H~~avr~Va~H~ry-PLfas~ 668 (733)
T KOG0650|consen 598 ELVKKL-LTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTL-------RLHEKAVRSVAFHKRY-PLFASG 668 (733)
T ss_pred HHHHHH-hcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHh-------hhhhhhhhhhhhcccc-ceeeee
Confidence 444444 3455689999999999999999 99999999999776777654 7899999999999998 999999
Q ss_pred eCCCeEEEEE------ccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEE
Q 014005 287 SSRGFVRLVD------MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVF 353 (432)
Q Consensus 287 ~~dg~i~iwd------~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iw 353 (432)
+.||++.|+- +....+ ...++.+.+|.-. ....|.+..|+|.-.+|.++ .+|+|++|
T Consensus 669 sdDgtv~Vfhg~VY~Dl~qnpl-iVPlK~L~gH~~~---------~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 669 SDDGTVIVFHGMVYNDLLQNPL-IVPLKRLRGHEKT---------NDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cCCCcEEEEeeeeehhhhcCCc-eEeeeeccCceee---------cccceEeecccCCCceEEecCCCceEEee
Confidence 9999999884 322221 2236778887110 12358899999999999985 56999998
No 128
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=3.1e-21 Score=167.07 Aligned_cols=300 Identities=15% Similarity=0.125 Sum_probs=203.7
Q ss_pred cCCCcEEEEEEcCCCC--EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 30 QDVDIVSAIEFDKTGD--YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~--~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
-+...|++++|+|... ++|+|+..|+|-+||+.+.+.. +.-+..+..|.
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d-----------------------~d~v~~f~~hs------ 234 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD-----------------------KDGVYLFTPHS------ 234 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc-----------------------cCceEEeccCC------
Confidence 3577899999999764 7899999999999999643321 22334567788
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
.+|.+|.|.| .+...+++.+.||+|++-|+++.....+....... ..+..+.|+.....++.
T Consensus 235 ------~~Vs~l~F~P-~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~-----------~~fs~~d~~~e~~~vl~ 296 (498)
T KOG4328|consen 235 ------GPVSGLKFSP-ANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDN-----------IWFSSLDFSAESRSVLF 296 (498)
T ss_pred ------ccccceEecC-CChhheeeeccCceeeeeeecchhhHHHhhcCccc-----------eeeeeccccCCCccEEE
Confidence 9999999955 24457899999999999999988755554443222 56777888888887777
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceee-EeecCCCCcC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFN-IVDMKPSNMD 264 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~-~~~~~~~~~~ 264 (432)
+.. -|...+||++...+ ....+ .-|...|.+++++|-.. +++++ -|++.+|||++.-...-. .+ ...
T Consensus 297 ~~~--~G~f~~iD~R~~~s--~~~~~-~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~l-----st~ 366 (498)
T KOG4328|consen 297 GDN--VGNFNVIDLRTDGS--EYENL-RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFL-----STL 366 (498)
T ss_pred eec--ccceEEEEeecCCc--cchhh-hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcce-----ecc
Confidence 776 56889999985422 12222 45777999999999755 46677 899999999984322111 11 336
Q ss_pred CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc--ccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (432)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 342 (432)
.|...|.++.|||++ -.|++.+.|+.|+|||.. +...+ ....+. |..... .=-......|.||-.++
T Consensus 367 ~HrrsV~sAyFSPs~-gtl~TT~~D~~IRv~dss~~sa~~~--p~~~I~-Hn~~t~-------RwlT~fKA~W~P~~~li 435 (498)
T KOG4328|consen 367 PHRRSVNSAYFSPSG-GTLLTTCQDNEIRVFDSSCISAKDE--PLGTIP-HNNRTG-------RWLTPFKAAWDPDYNLI 435 (498)
T ss_pred cccceeeeeEEcCCC-CceEeeccCCceEEeecccccccCC--ccceee-ccCccc-------ccccchhheeCCCccEE
Confidence 899999999999999 459999999999999974 11111 012222 211000 00123467899999999
Q ss_pred EEeeC-CeEEEEecCcce-eEeecceeeeehhhhhcccccccccce--eeEEEEeecccceeeeecc
Q 014005 343 LSRDY-MNLKVFRYEPVM-TLSFCGIYVWILRQLQHSRFMSIYALS--CVIYIITTLYLINLSALSA 405 (432)
Q Consensus 343 ~s~~~-~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~i~~~~~ 405 (432)
+.|.. ..|-|+|-+.-+ ....|.+ ....++...... ....++.|++.|.|+||-.
T Consensus 436 ~vg~~~r~IDv~~~~~~q~v~el~~P--------~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 436 VVGRYPRPIDVFDGNGGQMVCELHDP--------ESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred EEeccCcceeEEcCCCCEEeeeccCc--------cccccccceeecccccceeccCCccceEEEEec
Confidence 99988 899999982222 3344443 122222221111 1224677778899998874
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=4.1e-20 Score=166.38 Aligned_cols=253 Identities=9% Similarity=0.063 Sum_probs=171.7
Q ss_pred ccCCCcEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
+.+...+.+++|+|+|+.+ ++++.++.|++||..+++.. ..+..+.
T Consensus 27 ~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~~------ 73 (300)
T TIGR03866 27 FPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI---------------------------GTLPSGP------ 73 (300)
T ss_pred EECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE---------------------------EeccCCC------
Confidence 3334457789999999976 56778899999999876532 2333332
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
.+..+.| +|+++.++++ +.++.+++||+.+++....... . ..+..++++|++.+++
T Consensus 74 -------~~~~~~~--~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--~------------~~~~~~~~~~dg~~l~ 130 (300)
T TIGR03866 74 -------DPELFAL--HPNGKILYIANEDDNLVTVIDIETRKVLAEIPV--G------------VEPEGMAVSPDGKIVV 130 (300)
T ss_pred -------CccEEEE--CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--C------------CCcceEEECCCCCEEE
Confidence 3456788 8899877655 5689999999987653222111 1 2356789999999988
Q ss_pred cceeeccc-eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005 187 HLEWTENM-ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNM 263 (432)
Q Consensus 187 ~~~~~~~~-~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (432)
.+.. ++ .+.+||.. ........ .....+.+++|+|+++.++++ .++.+++||++ +++....+.......
T Consensus 131 ~~~~--~~~~~~~~d~~---~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~-~~~~~~~~~~~~~~~ 202 (300)
T TIGR03866 131 NTSE--TTNMAHFIDTK---TYEIVDNV--LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVA-TRKVIKKITFEIPGV 202 (300)
T ss_pred EEec--CCCeEEEEeCC---CCeEEEEE--EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcC-cceeeeeeeeccccc
Confidence 7765 43 56677876 44444433 123356789999999988644 69999999999 555555442211110
Q ss_pred CCCCcceEEEEEcCCCCcEE-EEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005 264 DDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (432)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 342 (432)
.........++|+|++ +.+ ++.+.++.+.+||+++++. ...+.. ...+.+++|+|+|++|
T Consensus 203 ~~~~~~~~~i~~s~dg-~~~~~~~~~~~~i~v~d~~~~~~----~~~~~~--------------~~~~~~~~~~~~g~~l 263 (300)
T TIGR03866 203 HPEAVQPVGIKLTKDG-KTAFVALGPANRVAVVDAKTYEV----LDYLLV--------------GQRVWQLAFTPDEKYL 263 (300)
T ss_pred ccccCCccceEECCCC-CEEEEEcCCCCeEEEEECCCCcE----EEEEEe--------------CCCcceEEECCCCCEE
Confidence 1111224568899999 654 4445677899999988765 333322 3568899999999999
Q ss_pred EEe-e-CCeEEEEec---CcceeEeec
Q 014005 343 LSR-D-YMNLKVFRY---EPVMTLSFC 364 (432)
Q Consensus 343 ~s~-~-~~~i~iwd~---~~~~~~~~~ 364 (432)
+++ . ++.|++||+ +++..++..
T Consensus 264 ~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 264 LTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 875 3 499999999 566666654
No 130
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=3.8e-21 Score=174.56 Aligned_cols=231 Identities=15% Similarity=0.230 Sum_probs=188.9
Q ss_pred cCCCcEEE-EEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 30 QDVDIVSA-IEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 30 ~h~~~V~~-~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
+|.+-|.+ ++|.+ ++-.|++|+.|.+|.+|...+... ..++.+|+
T Consensus 55 ~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P---------------------------~~~LkgH~------ 101 (745)
T KOG0301|consen 55 GPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEP---------------------------LYTLKGHK------ 101 (745)
T ss_pred cCcceeeccceeccccCcceEeecccceEEEEecCCCCc---------------------------hhhhhccc------
Confidence 36677777 88875 444699999999999999988763 47899999
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
..|.+++. ..++. +++||.|.++++|....-. .....|+ ..|-.++.-|.. .+++
T Consensus 102 ------snVC~ls~--~~~~~-~iSgSWD~TakvW~~~~l~----~~l~gH~-----------asVWAv~~l~e~-~~vT 156 (745)
T KOG0301|consen 102 ------SNVCSLSI--GEDGT-LISGSWDSTAKVWRIGELV----YSLQGHT-----------ASVWAVASLPEN-TYVT 156 (745)
T ss_pred ------cceeeeec--CCcCc-eEecccccceEEecchhhh----cccCCcc-----------hheeeeeecCCC-cEEe
Confidence 99999997 56665 9999999999999875432 1255555 778888888887 6677
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
|+. |.+|++|.- ++++++| .+|.+.|+.+++-+++.++-++.||.|++|++. +.++... .+|+
T Consensus 157 gsa--DKtIklWk~-----~~~l~tf-~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~--ge~l~~~-------~ght 219 (745)
T KOG0301|consen 157 GSA--DKTIKLWKG-----GTLLKTF-SGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD--GEVLLEM-------HGHT 219 (745)
T ss_pred ccC--cceeeeccC-----Cchhhhh-ccchhheeeeEEecCCCeEeecCCceEEEEecc--Cceeeee-------eccc
Confidence 777 999999985 4788888 899999999999998766555599999999997 6677655 8999
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~ 347 (432)
+.|.++...+++ ..++++++|++++||+.. .| .+.+.- | .-.|+++++-++|..++.|+|
T Consensus 220 n~vYsis~~~~~-~~Ivs~gEDrtlriW~~~---e~---~q~I~l-P------------ttsiWsa~~L~NgDIvvg~SD 279 (745)
T KOG0301|consen 220 NFVYSISMALSD-GLIVSTGEDRTLRIWKKD---EC---VQVITL-P------------TTSIWSAKVLLNGDIVVGGSD 279 (745)
T ss_pred eEEEEEEecCCC-CeEEEecCCceEEEeecC---ce---EEEEec-C------------ccceEEEEEeeCCCEEEeccC
Confidence 999999977776 899999999999999976 23 344443 1 358999999999999988999
Q ss_pred CeEEEEec
Q 014005 348 MNLKVFRY 355 (432)
Q Consensus 348 ~~i~iwd~ 355 (432)
|.||||..
T Consensus 280 G~VrVfT~ 287 (745)
T KOG0301|consen 280 GRVRVFTV 287 (745)
T ss_pred ceEEEEEe
Confidence 99999988
No 131
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.1e-21 Score=156.53 Aligned_cols=217 Identities=15% Similarity=0.180 Sum_probs=168.8
Q ss_pred CCCccccCCCcEEEEEEcC--CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCC
Q 014005 24 NPDEELQDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE 101 (432)
Q Consensus 24 ~~~~~~~h~~~V~~~~fsp--~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~ 101 (432)
...++..|+++|+.++|.. .|.+||+++.||.|.||.-+++. +.....+..|+
T Consensus 48 ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~-------------------------w~k~~e~~~h~ 102 (299)
T KOG1332|consen 48 LLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR-------------------------WTKAYEHAAHS 102 (299)
T ss_pred eeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc-------------------------hhhhhhhhhhc
Confidence 3455678999999999976 79999999999999999988874 22335667788
Q ss_pred ccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc-ceeeeeecCCCCccccccccccccccccccCCC
Q 014005 102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180 (432)
Q Consensus 102 ~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 180 (432)
..|++++|.|+.-|-.|++++.||.|.+.+.... ........+.|+ -.+.++.|.|
T Consensus 103 ------------~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~-----------~GvnsVswap 159 (299)
T KOG1332|consen 103 ------------ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE-----------IGVNSVSWAP 159 (299)
T ss_pred ------------ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc-----------cccceeeecC
Confidence 9999999988878889999999999999998755 333333334444 5677778877
Q ss_pred C---C-----------cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC----CEEEEE-cCCeE
Q 014005 181 S---F-----------AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC----ETFVSA-DDLRI 241 (432)
Q Consensus 181 ~---~-----------~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~-~d~~i 241 (432)
. + +.+++|+. |+.|+||+.... .....+++ .+|.+.++.++|.|.- .+++++ .||++
T Consensus 160 a~~~g~~~~~~~~~~~krlvSgGc--Dn~VkiW~~~~~-~w~~e~~l-~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 160 ASAPGSLVDQGPAAKVKRLVSGGC--DNLVKIWKFDSD-SWKLERTL-EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV 235 (299)
T ss_pred cCCCccccccCcccccceeeccCC--ccceeeeecCCc-chhhhhhh-hhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence 6 2 34777777 999999999864 44445556 8999999999999964 468888 99999
Q ss_pred EEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005 242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (432)
Q Consensus 242 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 298 (432)
.||..+......+. .-+......+..+.|++.| ++|+.++.|+.|.+|.-.
T Consensus 236 iIwt~~~e~e~wk~-----tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 236 IIWTKDEEYEPWKK-----TLLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEEecCccCcccc-----cccccCCcceEEEEEeccc-cEEEEecCCcEEEEEEeC
Confidence 99988732222211 1124456779999999999 999999999999999754
No 132
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.2e-22 Score=185.00 Aligned_cols=201 Identities=13% Similarity=0.217 Sum_probs=174.8
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
..|.++.. -..++.+++|+.|..+-+|.+.... .+..+..|. ++|.++.|+.....++.|.. +
T Consensus 29 aav~~lk~--~~s~r~~~~Gg~~~k~~L~~i~kp~--~i~S~~~he-----------spIeSl~f~~~E~Llaagsa--s 91 (825)
T KOG0267|consen 29 AAVGCLKI--RKSSRSLVTGGEDEKVNLWAIGKPN--AITSLTGHE-----------SPIESLTFDTSERLLAAGSA--S 91 (825)
T ss_pred hhhceeee--eccceeeccCCCceeeccccccCCc--hhheeeccC-----------CcceeeecCcchhhhccccc--C
Confidence 77777777 5678899999999999999886544 222355555 89999999999999999998 9
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (432)
|.|++||++ .++.++++ .+|...+.++.|+|-+.+++.| .|+.+++||++ ...|..++ .+|...+..
T Consensus 92 gtiK~wDle---eAk~vrtL-tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R-k~Gc~~~~-------~s~~~vv~~ 159 (825)
T KOG0267|consen 92 GTIKVWDLE---EAKIVRTL-TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR-KKGCSHTY-------KSHTRVVDV 159 (825)
T ss_pred Cceeeeehh---hhhhhhhh-hccccCcceeeeccceEEeccccccccceehhhh-ccCceeee-------cCCcceeEE
Confidence 999999999 88888888 8999999999999999999999 99999999999 45577766 789999999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEE
Q 014005 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLK 351 (432)
Q Consensus 273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~ 351 (432)
++|+|+| ++++.|+.|..++|||++.|++ ...|..| .+.+..+.|+|..-++++| .|++++
T Consensus 160 l~lsP~G-r~v~~g~ed~tvki~d~~agk~----~~ef~~~-------------e~~v~sle~hp~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 160 LRLSPDG-RWVASGGEDNTVKIWDLTAGKL----SKEFKSH-------------EGKVQSLEFHPLEVLLAPGSSDRTVR 221 (825)
T ss_pred EeecCCC-ceeeccCCcceeeeeccccccc----ccccccc-------------cccccccccCchhhhhccCCCCceee
Confidence 9999999 9999999999999999999987 6889987 8899999999998888887 559999
Q ss_pred EEecCcceeE
Q 014005 352 VFRYEPVMTL 361 (432)
Q Consensus 352 iwd~~~~~~~ 361 (432)
+||++....+
T Consensus 222 f~dletfe~I 231 (825)
T KOG0267|consen 222 FWDLETFEVI 231 (825)
T ss_pred eeccceeEEe
Confidence 9999433333
No 133
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=1.1e-20 Score=169.94 Aligned_cols=315 Identities=18% Similarity=0.139 Sum_probs=204.8
Q ss_pred EEEEcCC---CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 37 AIEFDKT---GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 37 ~~~fsp~---g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
+..|++. ...||.+..||.|.++|...... .++...+..+..|.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f---------------------r~ee~~lk~~~aH~------------ 100 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVF---------------------RLEERQLKKPLAHK------------ 100 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhc---------------------chhhhhhccccccc------------
Confidence 3677653 35789999999999999876431 11222335567788
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc-ceecceeec
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHLEWTE 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~ 192 (432)
..|.++.| .|....|++++.|.++++||+++..+.......+|. +.+.+++|.+... .+.+|+.
T Consensus 101 nAifDl~w--apge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~-----------~SvkS~cf~~~n~~vF~tGgR-- 165 (720)
T KOG0321|consen 101 NAIFDLKW--APGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT-----------GSVKSECFMPTNPAVFCTGGR-- 165 (720)
T ss_pred ceeEeecc--CCCceeEEEccCCceeeeeeeccceeecceeecccc-----------cccchhhhccCCCcceeeccC--
Confidence 89999999 676678999999999999999988865554455566 8999999998754 5677888
Q ss_pred cceEEEEeeccccc---------------c--eeeEEe------ecCCCCCeeE---EEeCCCCCEEEEE--cCCeEEEE
Q 014005 193 NMATKIANVGNSVH---------------A--RCQKVY------PHAHDFNINS---ISNNSDCETFVSA--DDLRINLW 244 (432)
Q Consensus 193 ~~~v~i~d~~~~~~---------------~--~~~~~~------~~~~~~~i~~---~~~~~~~~~l~~~--~d~~i~lw 244 (432)
||.+.|||++.... . ++.+.. ...+...|.+ +.+..|...||++ .|+.|++|
T Consensus 166 Dg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVW 245 (720)
T KOG0321|consen 166 DGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVW 245 (720)
T ss_pred CCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEE
Confidence 99999999874320 0 000000 0223344554 5555677888877 59999999
Q ss_pred eCCCCCceeeEeecCCCCcCCC---CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcc
Q 014005 245 NLEISDQCFNIVDMKPSNMDDL---TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS 321 (432)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~ 321 (432)
|++......+.-......+..| .-.+.++..+..| .+|.+.+.|+.|++||+++-..- .+..+.+|..+
T Consensus 246 DLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~s--P~~~~sg~~~~----- 317 (720)
T KOG0321|consen 246 DLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSIS--PVAEFSGKLNS----- 317 (720)
T ss_pred eecccccccccCCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCcC--chhhccCcccc-----
Confidence 9994333222211111122333 3467888888888 55555556999999999964431 13444443110
Q ss_pred ceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec----CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecc
Q 014005 322 FFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLY 396 (432)
Q Consensus 322 ~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 396 (432)
...+ .-..+||+.+|++| .+...++|.+ .+...+..|.. ...+..+..+....++|.+.
T Consensus 318 -----sf~v-ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~----------eVt~V~w~pS~~t~v~TcSd 381 (720)
T KOG0321|consen 318 -----SFYV-KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTR----------EVTTVRWLPSATTPVATCSD 381 (720)
T ss_pred -----eeee-eeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcce----------EEEEEeeccccCCCceeecc
Confidence 1122 23468999999998 5599999999 34444555542 12222222223335888899
Q ss_pred cceeeeeccC--CeeeecCCCceEEecCC
Q 014005 397 LINLSALSAG--MDSILQPDPIAIFYVSS 423 (432)
Q Consensus 397 ~~~i~~~~~~--~~~~~~~~~~~~~~~~~ 423 (432)
|..+.+|+.. +.-..-+|+..+.+..+
T Consensus 382 D~~~kiW~l~~~l~e~~~adk~s~v~~~~ 410 (720)
T KOG0321|consen 382 DFRVKIWRLSNGLEEIYAADKDSIVYEYS 410 (720)
T ss_pred CcceEEEeccCchhhccccccchhhhhhh
Confidence 9999999944 44444566666665443
No 134
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.5e-21 Score=164.53 Aligned_cols=258 Identities=14% Similarity=0.171 Sum_probs=181.5
Q ss_pred EEEEEEcC-------CCCEEEEecccceEEEEEecCCcCCCC---ccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005 35 VSAIEFDK-------TGDYLAVGDRGGRVILFETVGGKNTPN---QHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (432)
Q Consensus 35 V~~~~fsp-------~g~~l~t~~~dg~i~iw~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~ 104 (432)
-.|++|.. .|+|+|.|..|..|.|||++-...+.+ .+.-....... ..+.-..-++|+
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k---------~~k~~~~~~gHT--- 243 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKK---------KGKRSNSASGHT--- 243 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhh---------hcccccccccch---
Confidence 35666543 367999999999999999875432210 00000000000 000011245677
Q ss_pred cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC-Cc
Q 014005 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS-FA 183 (432)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 183 (432)
..|..++|+- ...+.||+|+.|.+|++||+.++++.....+. . +.|.++.|+|. ..
T Consensus 244 ---------davl~Ls~n~-~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~--~-----------k~Vq~l~wh~~~p~ 300 (463)
T KOG0270|consen 244 ---------DAVLALSWNR-NFRNVLASGSADKTVKLWDVDTGKPKSSITHH--G-----------KKVQTLEWHPYEPS 300 (463)
T ss_pred ---------HHHHHHHhcc-ccceeEEecCCCceEEEEEcCCCCcceehhhc--C-----------CceeEEEecCCCce
Confidence 8889999942 33568999999999999999999977665533 2 77999999887 56
Q ss_pred ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCE-EEEE-cCCeEEEEeCCCCCceeeEeecCCC
Q 014005 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (432)
Q Consensus 184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~ 261 (432)
++++|+. |++|.+.|.+......... .-.+.|-.++|+|.... ++++ +||+++-+|+|..++++.++
T Consensus 301 ~LLsGs~--D~~V~l~D~R~~~~s~~~w----k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~----- 369 (463)
T KOG0270|consen 301 VLLSGSY--DGTVALKDCRDPSNSGKEW----KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL----- 369 (463)
T ss_pred EEEeccc--cceEEeeeccCccccCceE----EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE-----
Confidence 8888999 9999999998421211112 23568899999997554 5566 99999999999888888876
Q ss_pred CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (432)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 341 (432)
..|.+.|.++++++.-+.++++++.|+.|++|++..... +....|.. .-+...+.++.|+-.+
T Consensus 370 --~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-----~~v~~~~~----------~~~rl~c~~~~~~~a~ 432 (463)
T KOG0270|consen 370 --KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-----KSVKEHSF----------KLGRLHCFALDPDVAF 432 (463)
T ss_pred --EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-----cccccccc----------cccceeecccCCCcce
Confidence 899999999999998889999999999999999875442 22222210 0234667777787544
Q ss_pred -EEEeeC-CeEEEEec
Q 014005 342 -LLSRDY-MNLKVFRY 355 (432)
Q Consensus 342 -l~s~~~-~~i~iwd~ 355 (432)
+|.|+. +.+++||+
T Consensus 433 ~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 433 TLAFGGEKAVLRVWDI 448 (463)
T ss_pred EEEecCccceEEEeec
Confidence 445655 88999999
No 135
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.87 E-value=2.9e-20 Score=172.19 Aligned_cols=295 Identities=16% Similarity=0.194 Sum_probs=210.5
Q ss_pred CccccCC-CcEEEEEEcCCCCE-EEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005 26 DEELQDV-DIVSAIEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (432)
Q Consensus 26 ~~~~~h~-~~V~~~~fsp~g~~-l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~ 103 (432)
...++|. +.|++++|..||.. ||+|+..|.+.+||++..+.+ ......|.
T Consensus 237 l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~--------------------------~v~~nah~-- 288 (910)
T KOG1539|consen 237 LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI--------------------------NVTRNAHY-- 288 (910)
T ss_pred EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee--------------------------eeeecccc--
Confidence 3456664 79999999999975 677888899999999998754 12334676
Q ss_pred ccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCC--Cccc-----------------
Q 014005 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHF--PFVS----------------- 162 (432)
Q Consensus 104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~--~~~~----------------- 162 (432)
+.|..+.|+ +....+++++.|+.+++|=..++. ...+..-.+| ++.|
T Consensus 289 ----------~sv~~~~fl--~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~D 356 (910)
T KOG1539|consen 289 ----------GSVTGATFL--PGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQD 356 (910)
T ss_pred ----------CCcccceec--CCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccC
Confidence 788888884 566788888888888877443211 0000000000 0000
Q ss_pred -----------------------------------------------------------------------c-----ccc
Q 014005 163 -----------------------------------------------------------------------S-----ENT 166 (432)
Q Consensus 163 -----------------------------------------------------------------------~-----~~~ 166 (432)
. ...
T Consensus 357 rt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~ 436 (910)
T KOG1539|consen 357 RTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGR 436 (910)
T ss_pred cchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccccc
Confidence 0 000
Q ss_pred --cc------cccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEe--ecCCCCCeeEEEeCCCCCEEEEE
Q 014005 167 --LL------AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVY--PHAHDFNINSISNNSDCETFVSA 236 (432)
Q Consensus 167 --~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~ 236 (432)
.. -...+.+++.++.|++...|.. .|.|.+|+++ .+-....| ...|.+.|+.++...-++.++++
T Consensus 437 ~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S--~G~Id~fNmQ---SGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa 511 (910)
T KOG1539|consen 437 HVLDPKRFKKDDINATAVCVSFCGNFVFIGYS--KGTIDRFNMQ---SGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSA 511 (910)
T ss_pred EEecCccccccCcceEEEEEeccCceEEEecc--CCeEEEEEcc---cCeeecccccCccccCceeEEEecCCCceEEEc
Confidence 00 0244556677777888888887 8999999998 55555555 25799999999999999999998
Q ss_pred -cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccc
Q 014005 237 -DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE 315 (432)
Q Consensus 237 -~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~ 315 (432)
.+|.+..||.. .+..+..+ .....+..+..+... .++|.+..|=.|+++|..+.+. .+.|.+|
T Consensus 512 ~~~Gilkfw~f~-~k~l~~~l--------~l~~~~~~iv~hr~s-~l~a~~~ddf~I~vvD~~t~kv----vR~f~gh-- 575 (910)
T KOG1539|consen 512 GADGILKFWDFK-KKVLKKSL--------RLGSSITGIVYHRVS-DLLAIALDDFSIRVVDVVTRKV----VREFWGH-- 575 (910)
T ss_pred cCcceEEEEecC-Ccceeeee--------ccCCCcceeeeeehh-hhhhhhcCceeEEEEEchhhhh----hHHhhcc--
Confidence 99999999999 44444433 334568888898887 8999999999999999998887 7999998
Q ss_pred ccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEE
Q 014005 316 SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYI 391 (432)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (432)
.+.|++++|||||++|++++ |++|++||+ .++..+..... ...+..+...-++
T Consensus 576 -----------~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~------------~~sls~SPngD~L 632 (910)
T KOG1539|consen 576 -----------GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSP------------CTSLSFSPNGDFL 632 (910)
T ss_pred -----------ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCc------------ceeeEECCCCCEE
Confidence 89999999999999999975 499999999 55555554432 2222223333356
Q ss_pred Eeeccc-ceeeeec
Q 014005 392 ITTLYL-INLSALS 404 (432)
Q Consensus 392 ~~g~~~-~~i~~~~ 404 (432)
+|...| +-|++|.
T Consensus 633 AT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 633 ATVHVDQNGIYLWS 646 (910)
T ss_pred EEEEecCceEEEEE
Confidence 666555 6788888
No 136
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=1.1e-20 Score=172.17 Aligned_cols=340 Identities=9% Similarity=0.082 Sum_probs=224.5
Q ss_pred chhhhhhhhcCCCCCccccCCCcEEEEEEcCC-----------CCEEEEecccceEEEEEecCCcCCCCccccchhhhcc
Q 014005 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKT-----------GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQ 80 (432)
Q Consensus 12 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~-----------g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 80 (432)
..|++...-........+.|+..|+.+.--|. ...+.|++.|++||+|+++....... -.+..++..
T Consensus 349 YvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~v--yrRNils~~ 426 (1080)
T KOG1408|consen 349 YVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQV--YRRNILSAN 426 (1080)
T ss_pred EEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccce--eecccchhh
Confidence 46766654444445667889999999876662 12488999999999999987432210 001111110
Q ss_pred ccccccccCCcceeeeeecCCccc--cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCC
Q 014005 81 MDFTSTSHPEYRYKTEFQSHEPEF--DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHF 158 (432)
Q Consensus 81 ~~~~~~~~p~~~~~~~~~~h~~~~--~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 158 (432)
-..++....+...+.. ...+.| +-...++-.-.+.+++. +|+|++|++|..-|.+++|++..-.. ...+..|
T Consensus 427 l~ki~y~d~~~q~~~d--~~~~~fdka~~s~~d~r~G~R~~~v--Sp~gqhLAsGDr~GnlrVy~Lq~l~~--~~~~eAH 500 (1080)
T KOG1408|consen 427 LSKIPYEDSTQQIMHD--ASAGIFDKALVSTCDSRFGFRALAV--SPDGQHLASGDRGGNLRVYDLQELEY--TCFMEAH 500 (1080)
T ss_pred hhcCccccCchhhhhh--ccCCcccccchhhcCcccceEEEEE--CCCcceecccCccCceEEEEehhhhh--hhheecc
Confidence 0000000000000000 000001 11112222257899999 99999999999999999999986552 2233344
Q ss_pred CccccccccccccccccccCCCC---CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC--CEE
Q 014005 159 PFVSSENTLLAEKNFMNEHNPPS---FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETF 233 (432)
Q Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l 233 (432)
. ..|.++.|+.. .+++++++. |..|.++|... .-..++++ .+|...|+++.|--+| ..+
T Consensus 501 e-----------sEilcLeyS~p~~~~kLLASasr--dRlIHV~Dv~r--ny~l~qtl-d~HSssITsvKFa~~gln~~M 564 (1080)
T KOG1408|consen 501 E-----------SEILCLEYSFPVLTNKLLASASR--DRLIHVYDVKR--NYDLVQTL-DGHSSSITSVKFACNGLNRKM 564 (1080)
T ss_pred c-----------ceeEEEeecCchhhhHhhhhccC--CceEEEEeccc--ccchhhhh-cccccceeEEEEeecCCceEE
Confidence 4 77888888754 467788888 99999999874 33456667 8999999999998876 556
Q ss_pred EEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc
Q 014005 234 VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312 (432)
Q Consensus 234 ~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 312 (432)
+++ .|..|. |+.........++.. .+..-....+..++..|.. +++++++.|..|+|||+.+|+. .+.|++
T Consensus 565 iscGADksim-Fr~~qk~~~g~~f~r--~t~t~~ktTlYDm~Vdp~~-k~v~t~cQDrnirif~i~sgKq----~k~FKg 636 (1080)
T KOG1408|consen 565 ISCGADKSIM-FRVNQKASSGRLFPR--HTQTLSKTTLYDMAVDPTS-KLVVTVCQDRNIRIFDIESGKQ----VKSFKG 636 (1080)
T ss_pred EeccCchhhh-eehhccccCceeccc--cccccccceEEEeeeCCCc-ceEEEEecccceEEEeccccce----eeeecc
Confidence 665 787775 444322222333310 0001112357889999998 9999999999999999999998 688887
Q ss_pred cccccCCccceeeeecceeEEEEcCCCCEEEE-eeCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceee
Q 014005 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCV 388 (432)
Q Consensus 313 h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (432)
. .++.+....+...|.|-|||+ ++|.++.++|. +++..+..|...+.-. .|.++|.
T Consensus 637 s----------~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~----------kF~nDCk 696 (1080)
T KOG1408|consen 637 S----------RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGV----------KFLNDCK 696 (1080)
T ss_pred c----------ccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeee----------eecccch
Confidence 2 223577889999999999998 58899999999 8898888887521111 1234443
Q ss_pred EEEEeecccceeeeec
Q 014005 389 IYIITTLYLINLSALS 404 (432)
Q Consensus 389 ~~~~~g~~~~~i~~~~ 404 (432)
.+++.+-||-|.||.
T Consensus 697 -HlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 697 -HLISVSGDGCIFVWK 711 (1080)
T ss_pred -hheeecCCceEEEEE
Confidence 477888999999998
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.8e-20 Score=153.64 Aligned_cols=222 Identities=13% Similarity=0.132 Sum_probs=162.7
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccc---ccccccccccCCCC-Ccceecce
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL---LAEKNFMNEHNPPS-FAHGYHLE 189 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~-~~~~~~~~ 189 (432)
+.|+++..-+ ..|+++++|+.||.|.+||++...-..-..+-.. .+|.+.+. -..-.|..+.|-|- ...+.+++
T Consensus 44 GsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k-~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 44 GSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAK-HKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred Cccceeeecc-ccceEEeecCCCccEEEEEeccccchhhccceeh-eeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence 8899999953 5689999999999999999975431110000000 01111111 12256777777664 44556667
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC---CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
+ |.++++||.+ +.+..-.| .-++.|.+-+++|- .-++|+| .|-+|++-|+. .+.+..++ .+
T Consensus 122 F--DhtlKVWDtn---TlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~L-------sG 186 (397)
T KOG4283|consen 122 F--DHTLKVWDTN---TLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHTL-------SG 186 (397)
T ss_pred c--cceEEEeecc---cceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceeee-------cc
Confidence 7 9999999998 55555555 45667888888884 3467788 99999999999 78888776 99
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccc-cCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES-HGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
|...|.++.|+|...-+|++|+.||.|++||+|...-| ...+..|... +.....-+.|.+.+.+++|+.||+++++
T Consensus 187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc---f~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~ 263 (397)
T KOG4283|consen 187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC---FRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS 263 (397)
T ss_pred ccCceEEEEeccCceeEEEecCCCceEEEEEeecccce---eEEeecccCccCccccccccccceeeeeeecccchhhhh
Confidence 99999999999998788999999999999999975444 4666665321 2222234567889999999999999998
Q ss_pred e-eCCeEEEEec
Q 014005 345 R-DYMNLKVFRY 355 (432)
Q Consensus 345 ~-~~~~i~iwd~ 355 (432)
+ .|.++++|+.
T Consensus 264 ~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 264 CGTDDRIRVWNM 275 (397)
T ss_pred ccCccceEEeec
Confidence 5 6699999999
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.6e-20 Score=162.90 Aligned_cols=249 Identities=16% Similarity=0.202 Sum_probs=187.8
Q ss_pred CCcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 32 VDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 32 ~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
.-+|.+..|.|+|+ .+++++....+..||+.+.+.. .+....++.
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~-------------------------k~~~~~g~e--------- 302 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT-------------------------KLKPPYGVE--------- 302 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeeccccccc-------------------------cccCCCCcc---------
Confidence 45899999999999 8999999999999999988754 112333443
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
+..+..... ++++++++..+..|.|.+.-..++++...... ++.+..+.|+.+++.++..+.
T Consensus 303 --~~~~e~FeV--Shd~~fia~~G~~G~I~lLhakT~eli~s~Ki--------------eG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 303 --EKSMERFEV--SHDSNFIAIAGNNGHIHLLHAKTKELITSFKI--------------EGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred --cchhheeEe--cCCCCeEEEcccCceEEeehhhhhhhhheeee--------------ccEEeeEEEecCCcEEEEEcC
Confidence 145666777 89999999999999999999888875443333 378899999999998888877
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC-CcCCCCc
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-NMDDLTE 268 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~ 268 (432)
+|.|.+||++ ...|++.+.....-.=++++.++++.+||+| +.|.|.|||.+. +...-..+|. ++.....
T Consensus 365 --~GeV~v~nl~---~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s---~~~s~~PkPik~~dNLtt 436 (514)
T KOG2055|consen 365 --TGEVYVWNLR---QNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS---CFASTNPKPIKTVDNLTT 436 (514)
T ss_pred --CceEEEEecC---CcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch---hhccCCCCchhhhhhhhe
Confidence 8999999999 6688888843333345578888999999999 999999999762 1111111111 2245566
Q ss_pred ceEEEEEcCCCCcEEEEEe--CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005 269 VITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~ 346 (432)
.|++++|+|+. ++||.++ .+..+++-.+.+... ...|.. .-. .-+.|++++|||.|-|||.|.
T Consensus 437 ~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TV----FsNfP~---~n~-------~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 437 AITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTV----FSNFPT---SNT-------KVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred eeeeeeeCcch-hhhhhhhhccccceEEEeccceee----eccCCC---CCC-------cccceEEEEecCCCceEEeec
Confidence 79999999999 9999887 556788888876433 122221 111 146799999999999999997
Q ss_pred C-CeEEEEec
Q 014005 347 Y-MNLKVFRY 355 (432)
Q Consensus 347 ~-~~i~iwd~ 355 (432)
+ |++.+|.+
T Consensus 502 e~grv~l~kL 511 (514)
T KOG2055|consen 502 EAGRVHLFKL 511 (514)
T ss_pred CCCceeeEee
Confidence 7 99999987
No 139
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=5.7e-20 Score=156.50 Aligned_cols=287 Identities=16% Similarity=0.266 Sum_probs=195.5
Q ss_pred hhhhhhhcCCCCCccccCCCcEEEEEEcC-----CCCEEEE---ecccceEEEEEec-CCcCCCCccccchhhhcccccc
Q 014005 14 WKCSQAFGERNPDEELQDVDIVSAIEFDK-----TGDYLAV---GDRGGRVILFETV-GGKNTPNQHISRSELEKQMDFT 84 (432)
Q Consensus 14 w~~~~~~~~~~~~~~~~h~~~V~~~~fsp-----~g~~l~t---~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~ 84 (432)
=||.++||+....+.--..=.|+.+.|+. +.++||. ++..|...+.-+. .++..
T Consensus 9 SKfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d----------------- 71 (472)
T KOG0303|consen 9 SKFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMD----------------- 71 (472)
T ss_pred hhhHHHhccccchhhhhcceeeeeeeccccccccCCceEEEEEecCCCcceeecccccccccC-----------------
Confidence 37888898665555544555677777764 3445443 1222222222221 11110
Q ss_pred ccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccc
Q 014005 85 STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE 164 (432)
Q Consensus 85 ~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 164 (432)
...-.+.||+ ++|..++|+| .+.+.+|+|+.|.+|.||++-.+.+..-
T Consensus 72 -------~~~P~v~GHt------------~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~------------ 119 (472)
T KOG0303|consen 72 -------ASYPLVCGHT------------APVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRD------------ 119 (472)
T ss_pred -------CCCCCccCcc------------ccccccccCc-cCCceeecCCCCceEEEEECCCcccccC------------
Confidence 1112467898 9999999987 3556899999999999999965542211
Q ss_pred cccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEE
Q 014005 165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRIN 242 (432)
Q Consensus 165 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~ 242 (432)
...++..+ .+|...|--++|+|... .|+++ .|.+|.
T Consensus 120 -----------------------------------------ltepvv~L-~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~ 157 (472)
T KOG0303|consen 120 -----------------------------------------LTEPVVEL-YGHQRRVGLVQWHPTAPNVLLSAGSDNTVS 157 (472)
T ss_pred -----------------------------------------cccceEEE-eecceeEEEEeecccchhhHhhccCCceEE
Confidence 11334444 78999999999999755 45566 999999
Q ss_pred EEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccc
Q 014005 243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (432)
Q Consensus 243 lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~ 322 (432)
+||+. ++..+-.+ .|...|.++.|+.+| .+|++.+.|..|+|||.++++. +..-.+|.
T Consensus 158 iWnv~-tgeali~l--------~hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~----v~e~~~he-------- 215 (472)
T KOG0303|consen 158 IWNVG-TGEALITL--------DHPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTV----VSEGVAHE-------- 215 (472)
T ss_pred EEecc-CCceeeec--------CCCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcE----eeeccccc--------
Confidence 99999 55554443 399999999999999 9999999999999999999886 34445551
Q ss_pred eeeeecceeEEEEcCCCCEEEEe----eCCeEEEEec----CcceeEeecceeeeehhhhhcccccccccceeeEEEEee
Q 014005 323 FTEIIASISDIKFANDGQHLLSR----DYMNLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITT 394 (432)
Q Consensus 323 ~~~~~~~v~~~~~s~dg~~l~s~----~~~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 394 (432)
...-..+.|-.+|..+.+| ++..+-+||. +++........ ...+..+|..+....-++|
T Consensus 216 ----G~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS---------nGvl~PFyD~dt~ivYl~G 282 (472)
T KOG0303|consen 216 ----GAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS---------NGVLLPFYDPDTSIVYLCG 282 (472)
T ss_pred ----CCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccC---------CceEEeeecCCCCEEEEEe
Confidence 2345567888899966665 3489999999 55544444432 2234444555554556788
Q ss_pred cccceeeeeccCCeeeecCCCceEEecCCceeeeeccC
Q 014005 395 LYLINLSALSAGMDSILQPDPIAIFYVSSPMVLEVQEG 432 (432)
Q Consensus 395 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (432)
.-|++|+.|.- +.|+-.++|.+.-.-.|-|+|
T Consensus 283 KGD~~IRYyEi------t~d~P~~hyln~f~S~epQRG 314 (472)
T KOG0303|consen 283 KGDSSIRYFEI------TNEPPFVHYLNTFSSKEPQRG 314 (472)
T ss_pred cCCcceEEEEe------cCCCceeEEecccccCCcccc
Confidence 99999999984 566767777776666666665
No 140
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=2.2e-19 Score=157.47 Aligned_cols=314 Identities=14% Similarity=0.085 Sum_probs=206.7
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCC----ccccchh-hhcccccccccc--------CCcceee
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPN----QHISRSE-LEKQMDFTSTSH--------PEYRYKT 95 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~--------p~~~~~~ 95 (432)
..|.+.|.++..-.+|.+| +|+.|+.|..||-+-.+.... +.+..+. +++....++--. -+..+..
T Consensus 284 ~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~ 362 (626)
T KOG2106|consen 284 HAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL 362 (626)
T ss_pred eecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence 3799999999999999855 599999999999433222100 1111111 111111111000 1233334
Q ss_pred eeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccccc
Q 014005 96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (432)
Q Consensus 96 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (432)
..++|. +....++- +|+..++++++.|+++++|+ ..++.-.... ..+..+
T Consensus 363 ~v~gh~------------delwgla~--hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~--------------~d~~~~ 412 (626)
T KOG2106|consen 363 TVQGHG------------DELWGLAT--HPSKNQLLTCGQDKHVRLWN--DHKLEWTKII--------------EDPAEC 412 (626)
T ss_pred EEEecc------------cceeeEEc--CCChhheeeccCcceEEEcc--CCceeEEEEe--------------cCceeE
Confidence 556777 78888998 88999999999999999999 3332222222 157889
Q ss_pred ccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceee
Q 014005 176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN 254 (432)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~ 254 (432)
+.|+|.+ .++.|.. .|.-.+.|.+ +...+..- .. ..++++++|+|+|.+||.| .|+.|++|.+...+..+.
T Consensus 413 ~~fhpsg-~va~Gt~--~G~w~V~d~e---~~~lv~~~-~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 413 ADFHPSG-VVAVGTA--TGRWFVLDTE---TQDLVTIH-TD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS 484 (626)
T ss_pred eeccCcc-eEEEeec--cceEEEEecc---cceeEEEE-ec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE
Confidence 9999999 8888887 8888888887 44444443 33 8899999999999999999 999999999986676665
Q ss_pred EeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCc-----c-ceeeeec
Q 014005 255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK-----S-FFTEIIA 328 (432)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~-----~-~~~~~~~ 328 (432)
.+. ..+.++|+.+.|++|+ ++|.+-+.|-.|-.|.....+. ....+. -...... . +...+..
T Consensus 485 r~~------k~~gs~ithLDwS~Ds-~~~~~~S~d~eiLyW~~~~~~~----~ts~kD-vkW~t~~c~lGF~v~g~s~~t 552 (626)
T KOG2106|consen 485 RVG------KCSGSPITHLDWSSDS-QFLVSNSGDYEILYWKPSECKQ----ITSVKD-VKWATYTCTLGFEVFGGSDGT 552 (626)
T ss_pred Eee------eecCceeEEeeecCCC-ceEEeccCceEEEEEccccCcc----cceecc-eeeeeeEEEEEEEEecccCCc
Confidence 541 2334889999999999 9999999999999994332221 111111 0000000 0 0011234
Q ss_pred ceeEEEEcCCCCEEEEeeC-CeEEEEec------CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceee
Q 014005 329 SISDIKFANDGQHLLSRDY-MNLKVFRY------EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLS 401 (432)
Q Consensus 329 ~v~~~~~s~dg~~l~s~~~-~~i~iwd~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 401 (432)
.|..++-+.+.+++|+|++ |.|++|.. .+...+..|... --+..+......++.+| .|.+|+
T Consensus 553 ~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~----------vt~V~Fl~~d~~li~tg-~D~Si~ 621 (626)
T KOG2106|consen 553 DINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSH----------VTNVAFLCKDSHLISTG-KDTSIM 621 (626)
T ss_pred hHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccce----------eEEEEEeeCCceEEecC-CCceEE
Confidence 5667777888899999988 99999998 233334444431 11122222333456666 999999
Q ss_pred eec
Q 014005 402 ALS 404 (432)
Q Consensus 402 ~~~ 404 (432)
.|+
T Consensus 622 qW~ 624 (626)
T KOG2106|consen 622 QWR 624 (626)
T ss_pred EEE
Confidence 996
No 141
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=2.9e-20 Score=162.66 Aligned_cols=273 Identities=11% Similarity=0.063 Sum_probs=195.7
Q ss_pred cchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCE-EEEecccceEEEEEecCCcCCCCccccchhhhccccccccccC
Q 014005 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP 89 (432)
Q Consensus 11 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~-l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 89 (432)
...|+++..-++ .......-.-.+.++.|+....+ .|+.+.|..+++|.-.... .
T Consensus 14 ~kl~D~s~~~~~-~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~-~---------------------- 69 (673)
T KOG4378|consen 14 TKLSDFSDLETK-SEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT-P---------------------- 69 (673)
T ss_pred eEEeecccccCc-cccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCC-C----------------------
Confidence 456777754331 11111122335899999877642 2344567789999765541 1
Q ss_pred CcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccc
Q 014005 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (432)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (432)
+...+....+.. ...|.++.+ ..++++|+..+.|+|||++...+.+ .+..|.
T Consensus 70 ~Vp~~~k~~gd~-----------~~Cv~~~s~-----S~y~~sgG~~~~Vkiwdl~~kl~hr--~lkdh~---------- 121 (673)
T KOG4378|consen 70 EVPRVRKLTGDN-----------AFCVACASQ-----SLYEISGGQSGCVKIWDLRAKLIHR--FLKDHQ---------- 121 (673)
T ss_pred ccceeeccccch-----------HHHHhhhhc-----ceeeeccCcCceeeehhhHHHHHhh--hccCCc----------
Confidence 111122222222 033444444 4799999999999999998655322 233444
Q ss_pred ccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCC
Q 014005 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLE 247 (432)
Q Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~-~d~~i~lwd~~ 247 (432)
+.|.++.++....+++.++. .|.|.|..+. +......|..+....+.-+.++|..+.+++ + ++|.|.+||+.
T Consensus 122 -stvt~v~YN~~DeyiAsvs~--gGdiiih~~~---t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~ 195 (673)
T KOG4378|consen 122 -STVTYVDYNNTDEYIASVSD--GGDIIIHGTK---TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ 195 (673)
T ss_pred -ceeEEEEecCCcceeEEecc--CCcEEEEecc---cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence 78999999999999999998 8999999887 444444442344556778999999888775 4 89999999999
Q ss_pred CCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeee
Q 014005 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (432)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 327 (432)
...++..+ ...|..+...|+|+|.++.+|++.+.|+.|.+||+++.+. ...+.. .
T Consensus 196 -g~sp~~~~------~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s----~~~l~y--------------~ 250 (673)
T KOG4378|consen 196 -GMSPIFHA------SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS----TDRLTY--------------S 250 (673)
T ss_pred -CCCcccch------hhhccCCcCcceecCCccceEEEecccceEEEeecccccc----cceeee--------------c
Confidence 33333322 3789999999999999988999999999999999997665 455554 4
Q ss_pred cceeEEEEcCCCCEEEEeeC-CeEEEEec----CcceeEeecce
Q 014005 328 ASISDIKFANDGQHLLSRDY-MNLKVFRY----EPVMTLSFCGI 366 (432)
Q Consensus 328 ~~v~~~~~s~dg~~l~s~~~-~~i~iwd~----~~~~~~~~~~~ 366 (432)
.+.+.++|+++|.+|+.|+. |.|..||+ .|+..+..|..
T Consensus 251 ~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~ 294 (673)
T KOG4378|consen 251 HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA 294 (673)
T ss_pred CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc
Confidence 68999999999999999966 99999999 78888888875
No 142
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=5.4e-20 Score=167.12 Aligned_cols=330 Identities=12% Similarity=0.100 Sum_probs=197.1
Q ss_pred CccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccc--cccccccC--------------
Q 014005 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQM--DFTSTSHP-------------- 89 (432)
Q Consensus 26 ~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p-------------- 89 (432)
....+|.+.|+++.|+|.+..|++++.|.++.+|..+...-+-......-++.+.. ..-..+.|
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 33458999999999999999999999999999999876532211111111111100 11111222
Q ss_pred ---------CcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCC
Q 014005 90 ---------EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHF 158 (432)
Q Consensus 90 ---------~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~ 158 (432)
.+.....+.||. +.|.++.| +|.|++|++.+.|.+-+++-.-..+ ...+...+.|
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~------------~~V~dv~W--~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH 406 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHV------------DGVKDVDW--DPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH 406 (764)
T ss_pred EEEeccCccceeecccccccc------------ccceeeee--cCCCCEEEEeccccceeeecccccccceeeecccccc
Confidence 122333456777 89999999 8999999999999999998665222 2222222222
Q ss_pred CccccccccccccccccccCCC------------------------------------------CCcceecceee-----
Q 014005 159 PFVSSENTLLAEKNFMNEHNPP------------------------------------------SFAHGYHLEWT----- 191 (432)
Q Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~------------------------------------------~~~~~~~~~~~----- 191 (432)
. ..+.++++-+ ++..++.-+.+
T Consensus 407 G-----------yDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~ 475 (764)
T KOG1063|consen 407 G-----------YDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFF 475 (764)
T ss_pred c-----------ccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCc
Confidence 2 2222333222 11111111100
Q ss_pred ----ccceE-EEE--ee-c-------ccc---------cceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-----CCeE
Q 014005 192 ----ENMAT-KIA--NV-G-------NSV---------HARCQKVYPHAHDFNINSISNNSDCETFVSA-D-----DLRI 241 (432)
Q Consensus 192 ----~~~~v-~i~--d~-~-------~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-----d~~i 241 (432)
.+|.. ..| .. . ..+ ....++.+ -+|...|.+++.+|+++++|++ . ...|
T Consensus 476 ~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL-YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI 554 (764)
T KOG1063|consen 476 PGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL-YGHGYEVYALAISPTGNLIASACKSSLKEHAVI 554 (764)
T ss_pred ccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh-ccCceeEEEEEecCCCCEEeehhhhCCccceEE
Confidence 00000 000 00 0 000 00011222 4899999999999999999987 4 3468
Q ss_pred EEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcc
Q 014005 242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS 321 (432)
Q Consensus 242 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~ 321 (432)
++|+.. .-..... +.+|+-.|+.++||||+ ++|++.+.|.++.+|...............+.|
T Consensus 555 ~lw~t~-~W~~~~~-------L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~H-------- 617 (764)
T KOG1063|consen 555 RLWNTA-NWLQVQE-------LEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAH-------- 617 (764)
T ss_pred EEEecc-chhhhhe-------ecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchhhhhcccccc--------
Confidence 999998 3333333 38999999999999999 999999999999999976433211112234454
Q ss_pred ceeeeecceeEEEEcCCCCEEEEee-CCeEEEEecCcc--eeEeecceeeeehhhhhcccccccccceeeEEEEeecccc
Q 014005 322 FFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRYEPV--MTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLI 398 (432)
Q Consensus 322 ~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 398 (432)
..-|++..|+|++.+++|++ |.+|++|..... +.+.-... .-+........++....+.....++.|-..|
T Consensus 618 -----tRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~-~~~~~aVTAv~~~~~~~~e~~~~vavGle~G 691 (764)
T KOG1063|consen 618 -----TRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC-LKFSLAVTAVAYLPVDHNEKGDVVAVGLEKG 691 (764)
T ss_pred -----ceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhch-hccCCceeeEEeeccccccccceEEEEeccc
Confidence 78899999999999999985 599999999111 21111000 0000000011122222233334688999999
Q ss_pred eeeeec
Q 014005 399 NLSALS 404 (432)
Q Consensus 399 ~i~~~~ 404 (432)
.|.+|.
T Consensus 692 eI~l~~ 697 (764)
T KOG1063|consen 692 EIVLWR 697 (764)
T ss_pred EEEEEe
Confidence 999999
No 143
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=1.8e-18 Score=155.65 Aligned_cols=269 Identities=11% Similarity=0.071 Sum_probs=172.8
Q ss_pred CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEE
Q 014005 44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (432)
Q Consensus 44 g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~ 123 (432)
++.+++++.|+.+++||+.+++. ...+..+. .+.+++|
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~---------------------------~~~~~~~~-------------~~~~l~~-- 38 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV---------------------------TRTFPVGQ-------------RPRGITL-- 38 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce---------------------------EEEEECCC-------------CCCceEE--
Confidence 35788999999999999987653 24555543 3667999
Q ss_pred cCCCCEE-EEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc-eeeccceEEEEee
Q 014005 124 APNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL-EWTENMATKIANV 201 (432)
Q Consensus 124 s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~v~i~d~ 201 (432)
+|+++.+ ++++.++.|++||..+++.... +..+ ..+..+++++++..++.. .. ++.+++||+
T Consensus 39 ~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--~~~~------------~~~~~~~~~~~g~~l~~~~~~--~~~l~~~d~ 102 (300)
T TIGR03866 39 SKDGKLLYVCASDSDTIQVIDLATGEVIGT--LPSG------------PDPELFALHPNGKILYIANED--DNLVTVIDI 102 (300)
T ss_pred CCCCCEEEEEECCCCeEEEEECCCCcEEEe--ccCC------------CCccEEEECCCCCEEEEEcCC--CCeEEEEEC
Confidence 8899876 5667889999999988764332 2111 234567889998876543 33 789999999
Q ss_pred cccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC-CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCC
Q 014005 202 GNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 279 (432)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 279 (432)
. ..+.+..+ . +...+.+++|+|+++.++++ .+ ..+.+||.+ +....... .....+..++|+|++
T Consensus 103 ~---~~~~~~~~-~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~-~~~~~~~~--------~~~~~~~~~~~s~dg 168 (300)
T TIGR03866 103 E---TRKVLAEI-P-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK-TYEIVDNV--------LVDQRPRFAEFTADG 168 (300)
T ss_pred C---CCeEEeEe-e-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCC-CCeEEEEE--------EcCCCccEEEECCCC
Confidence 8 55566655 2 23457889999999999988 55 457778988 44443322 112345779999999
Q ss_pred CcEEE-EEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE--eeCCeEEEEec-
Q 014005 280 CNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS--RDYMNLKVFRY- 355 (432)
Q Consensus 280 ~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s--~~~~~i~iwd~- 355 (432)
+.|+ ++..++.|++||+++++. ...+..+...... .......++|+|+|++++. ++++.+.+||+
T Consensus 169 -~~l~~~~~~~~~v~i~d~~~~~~----~~~~~~~~~~~~~------~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 169 -KELWVSSEIGGTVSVIDVATRKV----IKKITFEIPGVHP------EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred -CEEEEEcCCCCEEEEEEcCccee----eeeeeeccccccc------ccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 7664 445699999999998764 3433321000000 0113456889999998654 34488999999
Q ss_pred --CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005 356 --EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG 406 (432)
Q Consensus 356 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 406 (432)
+.+..+.... ...+..+..+-...+++...+|.|.+|+..
T Consensus 238 ~~~~~~~~~~~~-----------~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 238 TYEVLDYLLVGQ-----------RVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred CCcEEEEEEeCC-----------CcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 2222222111 011111111222223344678999999954
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=5.7e-20 Score=155.59 Aligned_cols=207 Identities=13% Similarity=0.162 Sum_probs=146.7
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--------------eeeeeecCCCCccccccccccccccccccCC
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--------------VKKIKEMDHFPFVSSENTLLAEKNFMNEHNP 179 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 179 (432)
+.++.+.-.+-++..+.++-+..|.|+||++.... .+.+..++.|. +.=+.+.|+
T Consensus 152 g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk-----------~EGy~LdWS 220 (440)
T KOG0302|consen 152 GGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK-----------GEGYGLDWS 220 (440)
T ss_pred cccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC-----------ccceeeecc
Confidence 56666666322345566666889999999986321 12223333333 455678888
Q ss_pred CCCcc-eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEe
Q 014005 180 PSFAH-GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIV 256 (432)
Q Consensus 180 ~~~~~-~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~ 256 (432)
|...- +.+|.- .+.|++|....+.-..-.+.| .+|+..|-.++|+|..+ .|+++ -||+|+|||++...+.-..
T Consensus 221 p~~~g~LlsGDc--~~~I~lw~~~~g~W~vd~~Pf-~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~- 296 (440)
T KOG0302|consen 221 PIKTGRLLSGDC--VKGIHLWEPSTGSWKVDQRPF-TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV- 296 (440)
T ss_pred cccccccccCcc--ccceEeeeeccCceeecCccc-cccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee-
Confidence 84332 444444 568999988753222223344 67999999999999754 56677 8999999999943222111
Q ss_pred ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc
Q 014005 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (432)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s 336 (432)
....|.+.|+-|.|+.+. .+||+|+.||+++|||+|+-+. .+++..|+.| ..+|+++.|+
T Consensus 297 -----~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~-~~pVA~fk~H-------------k~pItsieW~ 356 (440)
T KOG0302|consen 297 -----STKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKS-GQPVATFKYH-------------KAPITSIEWH 356 (440)
T ss_pred -----EeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccC-CCcceeEEec-------------cCCeeEEEec
Confidence 127899999999999998 6999999999999999997542 2346788887 8999999999
Q ss_pred CC--CCEEEEeeCCeEEEEec
Q 014005 337 ND--GQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 337 ~d--g~~l~s~~~~~i~iwd~ 355 (432)
|. +.+.++|.|..|.+||+
T Consensus 357 p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 357 PHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred cccCceEEeccCCCcEEEEEe
Confidence 95 44555678899999999
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=9.5e-20 Score=157.95 Aligned_cols=257 Identities=13% Similarity=0.191 Sum_probs=181.7
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCCCccccccccccccccccccCCCCC-cceeccee
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGYHLEW 190 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~ 190 (432)
++|++++|+|..+-+++++|...|.|-+||+.+.+ ...+.-+..|. .+|.++.|+|.. ..++..+.
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs-----------~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS-----------GPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC-----------ccccceEecCCChhheeeecc
Confidence 89999999776566789999999999999996322 23333344444 789999999874 46677777
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
||++++-|++..... .+... ......+.++.|+.+.+.++.+ .=|...+||++..+.....+ .-|...
T Consensus 256 --DGtiR~~D~~~~i~e-~v~s~-~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~-------~lh~kK 324 (498)
T KOG4328|consen 256 --DGTIRLQDFEGNISE-EVLSL-DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL-------RLHKKK 324 (498)
T ss_pred --CceeeeeeecchhhH-HHhhc-CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh-------hhhhcc
Confidence 999999999844221 11211 2344567788899988888888 66799999999666655544 667779
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-eeCC
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYM 348 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~~ 348 (432)
|++++++|-.+.+||+|+.|++.+|||+|.-.......-..-. |...|.+..|||+|--|++ +-|+
T Consensus 325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~-------------HrrsV~sAyFSPs~gtl~TT~~D~ 391 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLP-------------HRRSVNSAYFSPSGGTLLTTCQDN 391 (498)
T ss_pred cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccc-------------ccceeeeeEEcCCCCceEeeccCC
Confidence 9999999999899999999999999999964321100111122 3789999999998544555 7779
Q ss_pred eEEEEec-------CcceeEeecce-eeeehhhhhcccccccccceeeEEEEeecccceeeeeccC-Ceeeec
Q 014005 349 NLKVFRY-------EPVMTLSFCGI-YVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG-MDSILQ 412 (432)
Q Consensus 349 ~i~iwd~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~-~~~~~~ 412 (432)
.|+|||. .++.++..... ..|+ +++-..|..+ ..+++.|.+...|.|++.. .+.+++
T Consensus 392 ~IRv~dss~~sa~~~p~~~I~Hn~~t~Rwl------T~fKA~W~P~-~~li~vg~~~r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 392 EIRVFDSSCISAKDEPLGTIPHNNRTGRWL------TPFKAAWDPD-YNLIVVGRYPRPIDVFDGNGGQMVCE 457 (498)
T ss_pred ceEEeecccccccCCccceeeccCcccccc------cchhheeCCC-ccEEEEeccCcceeEEcCCCCEEeee
Confidence 9999999 34444433221 1121 2333333333 3468899999999999955 665666
No 146
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=2.2e-19 Score=146.91 Aligned_cols=273 Identities=14% Similarity=0.173 Sum_probs=183.0
Q ss_pred cCCCcEEEEEEcCCCC-EEEEeccc-------ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeee-cC
Q 014005 30 QDVDIVSAIEFDKTGD-YLAVGDRG-------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SH 100 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~-~l~t~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~h 100 (432)
.|.+.|+.++-+|..+ .|+|+..+ ..+.||.+.......+ . -..+++..+. .+
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~----~--------------~tlE~v~~Ldtea 122 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN----S--------------STLECVASLDTEA 122 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc----c--------------chhhHhhcCCHHH
Confidence 4567899999999655 55655432 2478998866432100 0 0111222222 12
Q ss_pred CccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC
Q 014005 101 EPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180 (432)
Q Consensus 101 ~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 180 (432)
- +.|.|+.| .|++..+++-. |+.|.+|++..+... ...+.... .........+-+|+|
T Consensus 123 v------------g~i~cvew--~Pns~klasm~-dn~i~l~~l~ess~~-vaev~ss~------s~e~~~~ftsg~Wsp 180 (370)
T KOG1007|consen 123 V------------GKINCVEW--EPNSDKLASMD-DNNIVLWSLDESSKI-VAEVLSSE------SAEMRHSFTSGAWSP 180 (370)
T ss_pred h------------CceeeEEE--cCCCCeeEEec-cCceEEEEcccCcch-heeecccc------cccccceecccccCC
Confidence 2 68999999 67888888776 889999999866521 11111000 000224566777877
Q ss_pred --CCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCE-EEEE-cCCeEEEEeCCCCCceeeEe
Q 014005 181 --SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIV 256 (432)
Q Consensus 181 --~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~-~d~~i~lwd~~~~~~~~~~~ 256 (432)
++..+.+.+ ++++..||++ +..+...+..+|...+..+.|+|+.+. |+++ +||.|++||.+.+..++..+
T Consensus 181 HHdgnqv~tt~---d~tl~~~D~R---T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el 254 (370)
T KOG1007|consen 181 HHDGNQVATTS---DSTLQFWDLR---TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL 254 (370)
T ss_pred CCccceEEEeC---CCcEEEEEcc---chhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc
Confidence 455555544 7899999999 555555555789999999999998775 5566 99999999999777777654
Q ss_pred ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccc-----ceeecccc--c--cc---CCcccee
Q 014005 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS-----ARILRDAA--E--SH---GSKSFFT 324 (432)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~h~--~--~~---~~~~~~~ 324 (432)
.+|..+|+++.|+|...+++++|+.|..|.+|...+-.--.+. ....++|. + .| +....+.
T Consensus 255 -------~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd 327 (370)
T KOG1007|consen 255 -------PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD 327 (370)
T ss_pred -------CCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccc
Confidence 9999999999999988799999999999999987642210000 00111100 0 01 1125678
Q ss_pred eeecceeEEEEcCCCCEEEEe-eC-CeEEEEec
Q 014005 325 EIIASISDIKFANDGQHLLSR-DY-MNLKVFRY 355 (432)
Q Consensus 325 ~~~~~v~~~~~s~dg~~l~s~-~~-~~i~iwd~ 355 (432)
+|...|.+++||.-..+++++ ++ |++.|=++
T Consensus 328 ehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 328 EHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 889999999999988887764 55 99988877
No 147
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2e-19 Score=156.43 Aligned_cols=222 Identities=13% Similarity=0.155 Sum_probs=167.7
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
.++.|.+++- +|+|.+++.|+-.|.+++|.+.+|.+..+. ..|- ..|+++.|+.++.++++++.
T Consensus 80 ~Pg~v~al~s--~n~G~~l~ag~i~g~lYlWelssG~LL~v~--~aHY-----------Q~ITcL~fs~dgs~iiTgsk- 143 (476)
T KOG0646|consen 80 LPGPVHALAS--SNLGYFLLAGTISGNLYLWELSSGILLNVL--SAHY-----------QSITCLKFSDDGSHIITGSK- 143 (476)
T ss_pred cccceeeeec--CCCceEEEeecccCcEEEEEeccccHHHHH--Hhhc-----------cceeEEEEeCCCcEEEecCC-
Confidence 3478999998 899988888889999999999999854443 3333 57999999999999999999
Q ss_pred ccceEEEEeecc------cccceeeEEeecCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC
Q 014005 192 ENMATKIANVGN------SVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (432)
Q Consensus 192 ~~~~v~i~d~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~ 262 (432)
||.|.+|.+-. ....++++.+ ..|+-.|+++...+. ...++++ .|.++++||+. .+..+..+
T Consensus 144 -Dg~V~vW~l~~lv~a~~~~~~~p~~~f-~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS-~g~LLlti------ 214 (476)
T KOG0646|consen 144 -DGAVLVWLLTDLVSADNDHSVKPLHIF-SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS-LGVLLLTI------ 214 (476)
T ss_pred -CccEEEEEEEeecccccCCCccceeee-ccCcceeEEEEecCCCccceEEEecCCceEEEEEec-cceeeEEE------
Confidence 99999998642 1245677888 899999999998765 3467777 99999999999 66665544
Q ss_pred cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeec--ceeEEEEcCCCC
Q 014005 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQ 340 (432)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~--~v~~~~~s~dg~ 340 (432)
.....+.+++.+|-+ ..+..|+.+|.|.+.++..-.....-+..-..| ..-.....+.+|.+ .|++++.+-||.
T Consensus 215 --~fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~-~~~t~~~~~~Gh~~~~~ITcLais~Dgt 290 (476)
T KOG0646|consen 215 --TFPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRH-EENTQINVLVGHENESAITCLAISTDGT 290 (476)
T ss_pred --ecCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccc-cccceeeeeccccCCcceeEEEEecCcc
Confidence 344679999999998 999999999999999887533100000000111 11111233444466 999999999999
Q ss_pred EEEEeeC-CeEEEEec---CcceeEe
Q 014005 341 HLLSRDY-MNLKVFRY---EPVMTLS 362 (432)
Q Consensus 341 ~l~s~~~-~~i~iwd~---~~~~~~~ 362 (432)
+|++|+. |.+.|||+ .+++++.
T Consensus 291 lLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 291 LLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred EEEeeCCCCCEEEEecchHHHHHHHh
Confidence 9999966 99999999 4454443
No 148
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.85 E-value=1.7e-18 Score=151.91 Aligned_cols=271 Identities=15% Similarity=0.229 Sum_probs=185.6
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
.....|.|+.|.++|+ ++||+.+|.|.||+..+.+. .++...|.
T Consensus 244 ~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~---------------------------~k~~~aH~-------- 287 (626)
T KOG2106|consen 244 REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRI---------------------------SKQVHAHD-------- 287 (626)
T ss_pred ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceE---------------------------EeEeeecC--------
Confidence 3447899999999998 67999999999999876542 24445888
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
+.|.++.. ..+| .|++|+.|+.|..||-.-.+ +.....+. .-+.++.++-.... ++.|+
T Consensus 288 ----ggv~~L~~--lr~G-tllSGgKDRki~~Wd~~y~k---~r~~elPe---------~~G~iRtv~e~~~d--i~vGT 346 (626)
T KOG2106|consen 288 ----GGVFSLCM--LRDG-TLLSGGKDRKIILWDDNYRK---LRETELPE---------QFGPIRTVAEGKGD--ILVGT 346 (626)
T ss_pred ----CceEEEEE--ecCc-cEeecCccceEEeccccccc---cccccCch---------hcCCeeEEecCCCc--EEEee
Confidence 99999999 5788 45669999999999932222 22211111 11556666554444 55555
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
. .+.|-.-.++ .+..+.. .+|......++.+|+.+.++++ .|+.+++|+ + .+.... ..-..
T Consensus 347 t--rN~iL~Gt~~---~~f~~~v--~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt--------~~~~d 408 (626)
T KOG2106|consen 347 T--RNFILQGTLE---NGFTLTV--QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWT--------KIIED 408 (626)
T ss_pred c--cceEEEeeec---CCceEEE--EecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEE--------EEecC
Confidence 4 4444444444 2222222 5888999999999999999988 999999999 3 222221 12235
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~- 347 (432)
++.++.|+|.| .+|.|...|...+.|.++..+ +..-.. ..+++.++|+|+|.+||.|+.
T Consensus 409 ~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~l----v~~~~d--------------~~~ls~v~ysp~G~~lAvgs~d 468 (626)
T KOG2106|consen 409 PAECADFHPSG--VVAVGTATGRWFVLDTETQDL----VTIHTD--------------NEQLSVVRYSPDGAFLAVGSHD 468 (626)
T ss_pred ceeEeeccCcc--eEEEeeccceEEEEeccccee----EEEEec--------------CCceEEEEEcCCCCEEEEecCC
Confidence 68899999997 899999999999999998543 222222 478999999999999999965
Q ss_pred CeEEEEec----CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 348 MNLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 348 ~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
+.|+||.+ ..+..+..+.. +++..+-.+....++++-+-|-.|-.|..
T Consensus 469 ~~iyiy~Vs~~g~~y~r~~k~~g----------s~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 469 NHIYIYRVSANGRKYSRVGKCSG----------SPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred CeEEEEEECCCCcEEEEeeeecC----------ceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 99999999 33333333321 23333333333345666666667777753
No 149
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.6e-20 Score=179.94 Aligned_cols=254 Identities=13% Similarity=0.149 Sum_probs=190.6
Q ss_pred CccccCCCcEEEEEEcCCCCE----EEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCC
Q 014005 26 DEELQDVDIVSAIEFDKTGDY----LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE 101 (432)
Q Consensus 26 ~~~~~h~~~V~~~~fsp~g~~----l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~ 101 (432)
...++-...-+.++|.+.|.. ||.|..||.|.+||...-.. ..+...+.++..|+
T Consensus 58 ~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~---------------------~~~~~~la~~~~h~ 116 (1049)
T KOG0307|consen 58 VGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA---------------------NASEEVLATKSKHT 116 (1049)
T ss_pred cccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc---------------------CcchHHHhhhcccC
Confidence 334555667889999998876 88899999999999866210 00234556778888
Q ss_pred ccccccchhhhhcceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC
Q 014005 102 PEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180 (432)
Q Consensus 102 ~~~~~~~~~~~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 180 (432)
+.|..+.| ++. +++||+|+.||.|.|||+...+......-.. ..+.|.+++|+.
T Consensus 117 ------------G~V~gLDf--N~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~-----------~~~eI~~lsWNr 171 (1049)
T KOG0307|consen 117 ------------GPVLGLDF--NPFQGNLLASGADDGEILIWDLNKPETPFTPGSQA-----------PPSEIKCLSWNR 171 (1049)
T ss_pred ------------Cceeeeec--cccCCceeeccCCCCcEEEeccCCcCCCCCCCCCC-----------CcccceEeccch
Confidence 99999999 555 4599999999999999998644221111111 237899999998
Q ss_pred CCccee-cceeeccceEEEEeecccccceeeEEeecCCC--CCeeEEEeCCCCC-EEEEE--cC--CeEEEEeCCCCCce
Q 014005 181 SFAHGY-HLEWTENMATKIANVGNSVHARCQKVYPHAHD--FNINSISNNSDCE-TFVSA--DD--LRINLWNLEISDQC 252 (432)
Q Consensus 181 ~~~~~~-~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~-~l~~~--~d--~~i~lwd~~~~~~~ 252 (432)
....+. +++. +|.+.|||++ ..+++-.+ ..+. ..+..++|+|++. .++++ +| -.|.+||+|.....
T Consensus 172 kvqhILAS~s~--sg~~~iWDlr---~~~pii~l-s~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP 245 (1049)
T KOG0307|consen 172 KVSHILASGSP--SGRAVIWDLR---KKKPIIKL-SDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP 245 (1049)
T ss_pred hhhHHhhccCC--CCCceecccc---CCCccccc-ccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc
Confidence 866554 4454 7899999999 44444444 2232 3578899999854 34444 33 36999999988888
Q ss_pred eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeE
Q 014005 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (432)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~ 332 (432)
++++ ++|...|.++.|++.++.+|++++.|++|.+|+..+++. +..+... .+++..
T Consensus 246 ~k~~-------~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv----l~~~p~~-------------~nW~fd 301 (1049)
T KOG0307|consen 246 LKIL-------EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV----LGELPAQ-------------GNWCFD 301 (1049)
T ss_pred hhhh-------cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE----eeecCCC-------------Ccceee
Confidence 8876 899999999999998879999999999999999999886 4555442 589999
Q ss_pred EEEcCCCC-EEEEe-eCCeEEEEec
Q 014005 333 IKFANDGQ-HLLSR-DYMNLKVFRY 355 (432)
Q Consensus 333 ~~~s~dg~-~l~s~-~~~~i~iwd~ 355 (432)
+.|.|... .++++ -+|.|.|+.+
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeee
Confidence 99999876 44444 4499999999
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=5.7e-19 Score=154.65 Aligned_cols=258 Identities=15% Similarity=0.150 Sum_probs=182.8
Q ss_pred cceeEEEEEEcCCCC-EEEEEeCCCeEEEEEccCc--ceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
..+.++.| +.... ..++.+.|..|++|.-... ++..+..... ..-.|++......+++.|+.
T Consensus 35 pg~~s~~w--~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g-------------d~~~Cv~~~s~S~y~~sgG~ 99 (673)
T KOG4378|consen 35 PGDFSFNW--QRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG-------------DNAFCVACASQSLYEISGGQ 99 (673)
T ss_pred Ccceeeec--cccceEEEeecCCceeEEEecccCCCCccceeecccc-------------chHHHHhhhhcceeeeccCc
Confidence 45889999 44442 2333467889999975433 1222222221 23445555566688888888
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
.+.|+|||++ ...+.+.+ ++|.+.|+++.++-...++|++ ..|.|.+..+. ++.....+ -.+....
T Consensus 100 --~~~Vkiwdl~---~kl~hr~l-kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~-t~~~tt~f------~~~sgqs 166 (673)
T KOG4378|consen 100 --SGCVKIWDLR---AKLIHRFL-KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTK-TKQKTTTF------TIDSGQS 166 (673)
T ss_pred --CceeeehhhH---HHHHhhhc-cCCcceeEEEEecCCcceeEEeccCCcEEEEecc-cCccccce------ecCCCCe
Confidence 9999999998 66677777 8999999999999999999999 88999999998 55544443 0233456
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE-EE-eeC
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LS-RDY 347 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l-~s-~~~ 347 (432)
|+-+.|+|....+|.+++.+|.|.+||....... ....+.| ..+..+++|+|....| ++ |-|
T Consensus 167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---~~~~~~H-------------sAP~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---FHASEAH-------------SAPCRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred EEEeecccccceeeEeeccCCeEEEEeccCCCcc---cchhhhc-------------cCCcCcceecCCccceEEEeccc
Confidence 7899999988667888999999999999865542 2333445 7899999999987655 44 566
Q ss_pred CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC-------CeeeecCCCce
Q 014005 348 MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG-------MDSILQPDPIA 417 (432)
Q Consensus 348 ~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~-------~~~~~~~~~~~ 417 (432)
..|.+||+ +...++.. ..++..+.+..|..+++.|+..|.|..||-. .-....+.=+.
T Consensus 231 kki~~yD~~s~~s~~~l~y------------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~ 298 (673)
T KOG4378|consen 231 KKINIYDIRSQASTDRLTY------------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTR 298 (673)
T ss_pred ceEEEeecccccccceeee------------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeE
Confidence 99999999 33333332 3367777788899999999999999999932 11222223345
Q ss_pred EEecCCceee
Q 014005 418 IFYVSSPMVL 427 (432)
Q Consensus 418 ~~~~~~~~~~ 427 (432)
+.+.++|.|+
T Consensus 299 vafq~s~tvl 308 (673)
T KOG4378|consen 299 VAFQPSPTVL 308 (673)
T ss_pred EEeeecceee
Confidence 5566666444
No 151
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=1.6e-19 Score=162.60 Aligned_cols=105 Identities=30% Similarity=0.389 Sum_probs=85.8
Q ss_pred EEEEE-cCCeEEEEeCCCCCceeeEeecCC-CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccccee
Q 014005 232 TFVSA-DDLRINLWNLEISDQCFNIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 309 (432)
Q Consensus 232 ~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 309 (432)
.|+++ +||.|++|.+...+-.-. . ..| ..+..|...|+++.|||-...+|++++.|-+|++||+++++. ...
T Consensus 642 rLAVa~ddg~i~lWr~~a~gl~e~-~-~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~----~~~ 715 (1012)
T KOG1445|consen 642 RLAVATDDGQINLWRLTANGLPEN-E-MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL----YSR 715 (1012)
T ss_pred HeeecccCceEEEEEeccCCCCcc-c-CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh----hhe
Confidence 57777 888888888873332111 1 111 134789999999999998778999999999999999999887 578
Q ss_pred ecccccccCCccceeeeecceeEEEEcCCCCEEEE-eeCCeEEEEec
Q 014005 310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNLKVFRY 355 (432)
Q Consensus 310 ~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~~~i~iwd~ 355 (432)
+.+| .+.|.+++|||||+.+|+ |-||+|++|+.
T Consensus 716 l~gH-------------tdqIf~~AWSpdGr~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 716 LVGH-------------TDQIFGIAWSPDGRRIATVCKDGTLRVYEP 749 (1012)
T ss_pred eccC-------------cCceeEEEECCCCcceeeeecCceEEEeCC
Confidence 8887 899999999999999999 67899999999
No 152
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=9.7e-19 Score=145.40 Aligned_cols=264 Identities=12% Similarity=0.149 Sum_probs=181.3
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
-...+.|+|||..|++-+.|..+++|++......+.. +... ......+++-.. .
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~----------~~~~-----~~~~~~~~r~~e-----------g 104 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA----------DGPL-----NFSKHLSYRYQE-----------G 104 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCC----------CCcc-----ccccceeEEecc-----------C
Confidence 4567899999999999999999999998543211000 0000 000000111111 1
Q ss_pred cceeEEEEEE-----cCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 114 EKINRVRWCA-----APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 114 ~~v~~l~~~~-----s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..|..-+|.+ .|+..++++.+.+.-|++||.-+|+++....
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~---------------------------------- 150 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYR---------------------------------- 150 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchh----------------------------------
Confidence 5688888865 3678899999999999999999988543211
Q ss_pred eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
.||-. ..-....+++|+|||..|.+|....|++||+..++.....+........+..+
T Consensus 151 ---------~ydh~-------------de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 151 ---------AYDHQ-------------DEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred ---------hhhhH-------------HhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 11111 01113458999999999999999999999995466544333222222245567
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee--
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-- 346 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-- 346 (432)
.|.+++|+|-.+..+|.|+....+-||.-..+.+ +..+.+| .+.|+.+.|.+||..|.+|.
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p----l~llggh-------------~gGvThL~~~edGn~lfsGaRk 271 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP----LQLLGGH-------------GGGVTHLQWCEDGNKLFSGARK 271 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCc----eeeeccc-------------CCCeeeEEeccCcCeecccccC
Confidence 8999999998867999999999999998777666 5778787 89999999999999999974
Q ss_pred CCeEEEEec----CcceeEeecceeeeehhhhhcccccccccc-eeeEEEEeecccceeeeecc
Q 014005 347 YMNLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMSIYAL-SCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 347 ~~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~i~~~~~ 405 (432)
+..|..||+ .++..+..|.. ......++.. .+.-.+++|+.+|.|++|+.
T Consensus 272 ~dkIl~WDiR~~~~pv~~L~rhv~---------~TNQRI~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 272 DDKILCWDIRYSRDPVYALERHVG---------DTNQRILFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred CCeEEEEeehhccchhhhhhhhcc---------CccceEEEecCCCCceeeccCCCccEEEEec
Confidence 389999999 45555544432 0111111111 13346999999999999994
No 153
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.7e-18 Score=164.38 Aligned_cols=301 Identities=10% Similarity=0.122 Sum_probs=200.3
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
.-..+.|+|-...+++++..-.|++||.+.++.. ..|..+.+. .
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l---------------------------~~F~n~~~~---------~ 1109 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL---------------------------NGFDNGAFP---------D 1109 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCcee---------------------------ccccCCCCC---------C
Confidence 3566889999999999886679999999987643 233333211 1
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc---ceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
..|+.+.+....|..++++|+.||.|+||+-... +.+.+.....-. .......+.. .-+.|.....++++++.
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls---~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd 1185 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLS---DQLPGARGTG-LVVDWQQQSGHLLVTGD 1185 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecccc---ccCccCCCCC-eeeehhhhCCeEEecCC
Confidence 6789999865556678999999999999986432 223332222111 0111111122 44566666566666554
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCc--eeeEeecCCCCcCCC
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDL 266 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~--~~~~~~~~~~~~~~~ 266 (432)
-..|+|||.. ...+...++.+....++++.-+. .|+.+++| .||.+++||.+.... .+..+ ..|
T Consensus 1186 --~r~IRIWDa~---~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~-------R~h 1253 (1387)
T KOG1517|consen 1186 --VRSIRIWDAH---KEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY-------REH 1253 (1387)
T ss_pred --eeEEEEEecc---cceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee-------ccc
Confidence 5799999998 55666655456666777776553 47899999 999999999995443 33333 677
Q ss_pred Ccc--eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 267 TEV--ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 267 ~~~--v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
+.. |..+.+.+.|-..|++|+.||.|++||+|.... ..... ...|. +..+..+++..+++...+|+
T Consensus 1254 ~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~~-iv~~~----------~yGs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1254 NDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFLT-IVAHW----------EYGSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred CCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccce-eeecc----------ccCccceeeeeccCCCeeee
Confidence 776 999999998745699999999999999997421 11111 11110 00235899999999999999
Q ss_pred eeCCeEEEEec--CcceeEeecceeeeehhhhhcccc--cccccceeeEEEEeecccceeeeec
Q 014005 345 RDYMNLKVFRY--EPVMTLSFCGIYVWILRQLQHSRF--MSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 345 ~~~~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
|+.+.|+||++ +.+..++.++. ++..... ..+.+..--..++.|+.|..|.||.
T Consensus 1322 Gs~q~ikIy~~~G~~l~~~k~n~~------F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1322 GSAQLIKIYSLSGEQLNIIKYNPG------FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred cCcceEEEEecChhhhcccccCcc------cccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 98799999999 66666664432 2211111 1122222222588999999999998
No 154
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=6e-18 Score=146.41 Aligned_cols=255 Identities=11% Similarity=0.051 Sum_probs=172.1
Q ss_pred cceeEEEEEEc-----CCCCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCC--cc-----ccccccccccccccccCCC
Q 014005 114 EKINRVRWCAA-----PNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFP--FV-----SSENTLLAEKNFMNEHNPP 180 (432)
Q Consensus 114 ~~v~~l~~~~s-----~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~--~~-----~~~~~~~~~~~i~~~~~~~ 180 (432)
..-.|++|+-. ..|+++|.|+.|..|.|||+.-.. ......+.... .. -+....-....+..++|+.
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~ 253 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR 253 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc
Confidence 44467777532 136799999999999999985221 11111100000 00 0000001125667788877
Q ss_pred CC-cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEee
Q 014005 181 SF-AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVD 257 (432)
Q Consensus 181 ~~-~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~ 257 (432)
.. ..+++|+. |.+|++||+. +++|.+++ ..|.+.|.++.|+|. ..+|++| .|+++.+.|.+.....-..+
T Consensus 254 ~~~nVLaSgsa--D~TV~lWD~~---~g~p~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w- 326 (463)
T KOG0270|consen 254 NFRNVLASGSA--DKTVKLWDVD---TGKPKSSI-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW- 326 (463)
T ss_pred ccceeEEecCC--CceEEEEEcC---CCCcceeh-hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-
Confidence 64 45566666 9999999999 89999999 789999999999996 5567788 99999999999433222222
Q ss_pred cCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC
Q 014005 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (432)
Q Consensus 258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~ 337 (432)
...+.|-.++|+|..+..++++..||+++-+|+|....+ +.+++.| .++|+++++++
T Consensus 327 -------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~---vwt~~AH-------------d~~ISgl~~n~ 383 (463)
T KOG0270|consen 327 -------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP---VWTLKAH-------------DDEISGLSVNI 383 (463)
T ss_pred -------EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc---eeEEEec-------------cCCcceEEecC
Confidence 234679999999998888999999999999999986433 6888887 89999999998
Q ss_pred CCC-EEEEe-eCCeEEEEec--CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 338 DGQ-HLLSR-DYMNLKVFRY--EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 338 dg~-~l~s~-~~~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
.-. +|+++ .++.+++|++ ..-+....|.. -...-.|.....+..+.++.|...+.++||+.
T Consensus 384 ~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~-------~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 384 QTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF-------KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred CCCcceeeccccceEEEEeecCCCCcccccccc-------cccceeecccCCCcceEEEecCccceEEEeec
Confidence 755 45555 5599999999 22222222221 00112222223344556777777789999994
No 155
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.5e-18 Score=160.27 Aligned_cols=244 Identities=14% Similarity=0.156 Sum_probs=179.5
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
...+.|+| .++|+.+++++.||.|++|+.....- .......+. ..+.+++ ....++++++. +
T Consensus 14 ~G~t~i~~--d~~gefi~tcgsdg~ir~~~~~sd~e-~P~ti~~~g-----------~~v~~ia--~~s~~f~~~s~--~ 75 (933)
T KOG1274|consen 14 GGLTLICY--DPDGEFICTCGSDGDIRKWKTNSDEE-EPETIDISG-----------ELVSSIA--CYSNHFLTGSE--Q 75 (933)
T ss_pred CceEEEEE--cCCCCEEEEecCCCceEEeecCCccc-CCchhhccC-----------ceeEEEe--ecccceEEeec--c
Confidence 77889999 89999999999999999999765420 100010011 2333333 34447888888 9
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (432)
+.|.+|.+........+..| +-++++++++-+|.++|.| +|-.|++-++. .......+ .+|.++|.+
T Consensus 76 ~tv~~y~fps~~~~~iL~Rf----tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~-D~s~~~~l-------rgh~apVl~ 143 (933)
T KOG1274|consen 76 NTVLRYKFPSGEEDTILARF----TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD-DSSQEKVL-------RGHDAPVLQ 143 (933)
T ss_pred ceEEEeeCCCCCccceeeee----eccceEEEEecCCcEEEeecCceeEEEEecc-ccchheee-------cccCCceee
Confidence 99999998855444444444 4589999999999999999 99999999998 34444443 899999999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC-CCEEEEeeCCeEE
Q 014005 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDYMNLK 351 (432)
Q Consensus 273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~s~~~~~i~ 351 (432)
+.|+|.+ ++||+.+.||.|++||+.++.. ...+.+ .. +.... +....+..++|+|+ |.+++.+.+++|+
T Consensus 144 l~~~p~~-~fLAvss~dG~v~iw~~~~~~~----~~tl~~-v~-k~n~~---~~s~i~~~~aW~Pk~g~la~~~~d~~Vk 213 (933)
T KOG1274|consen 144 LSYDPKG-NFLAVSSCDGKVQIWDLQDGIL----SKTLTG-VD-KDNEF---ILSRICTRLAWHPKGGTLAVPPVDNTVK 213 (933)
T ss_pred eeEcCCC-CEEEEEecCceEEEEEcccchh----hhhccc-CC-ccccc---cccceeeeeeecCCCCeEEeeccCCeEE
Confidence 9999999 9999999999999999998875 344443 10 00000 01356788999999 5566668889999
Q ss_pred EEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005 352 VFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG 406 (432)
Q Consensus 352 iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 406 (432)
+|+. .+...++... ..+.++.+....|..|++++..+|.|.||+..
T Consensus 214 vy~r~~we~~f~Lr~~~---------~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 214 VYSRKGWELQFKLRDKL---------SSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred EEccCCceeheeecccc---------cccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 9999 4545554433 24457777777788899999999999999943
No 156
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.82 E-value=9.6e-19 Score=157.68 Aligned_cols=271 Identities=11% Similarity=0.093 Sum_probs=181.1
Q ss_pred CCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCC
Q 014005 22 ERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE 101 (432)
Q Consensus 22 ~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~ 101 (432)
++.....+.|...|..+.|-|....|++++.|.++++||+++.+.. -...+.||+
T Consensus 90 e~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~-------------------------G~~~~~GH~ 144 (720)
T KOG0321|consen 90 ERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV-------------------------GGRLNLGHT 144 (720)
T ss_pred hhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee-------------------------cceeecccc
Confidence 3445667889999999999996668999999999999999987644 112478999
Q ss_pred ccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeee--------ecCCC-Ccccccccc-----
Q 014005 102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK--------EMDHF-PFVSSENTL----- 167 (432)
Q Consensus 102 ~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~~~~-~~~~~~~~~----- 167 (432)
..|-+++|.| .|...|++|+.||.|.|||+.-.....+. .++.. .+.....+-
T Consensus 145 ------------~SvkS~cf~~-~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 145 ------------GSVKSECFMP-TNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ------------cccchhhhcc-CCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 9999999953 34567999999999999999643311111 11110 000000000
Q ss_pred cccccccc---ccCCCCCcceecceeeccceEEEEeecccccc---eeeEEee-cCC---CCCeeEEEeCCCCCEEEEE-
Q 014005 168 LAEKNFMN---EHNPPSFAHGYHLEWTENMATKIANVGNSVHA---RCQKVYP-HAH---DFNINSISNNSDCETFVSA- 236 (432)
Q Consensus 168 ~~~~~i~~---~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~---~~~~~~~-~~~---~~~i~~~~~~~~~~~l~~~- 236 (432)
..+..|.. +.+..|...+++++. +|+.+++||++..... .+..... ..| ...+.++.....|.+|.+.
T Consensus 212 A~s~ti~ssvTvv~fkDe~tlaSaga-~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC 290 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDESTLASAGA-ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC 290 (720)
T ss_pred cccCceeeeeEEEEEeccceeeeccC-CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence 11223333 334455556665554 5999999999854221 1111110 122 3357788888888888877
Q ss_pred cCCeEEEEeCCCCCce-eeEeecCCCCcCCCCc--ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccc
Q 014005 237 DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTE--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA 313 (432)
Q Consensus 237 ~d~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h 313 (432)
.|+.|++|++..-+.. ...+ .++.. .-..-..+|++ .++++|+.|....+|.+.+-+.. ...+.+|
T Consensus 291 tD~sIy~ynm~s~s~sP~~~~-------sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~~---~~~l~Gh 359 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLSISPVAEF-------SGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEAP---PALLLGH 359 (720)
T ss_pred cCCcEEEEeccccCcCchhhc-------cCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCccCC---hhhhhCc
Confidence 9999999999833221 1111 22211 12234578999 99999999999999999876543 4667776
Q ss_pred ccccCCccceeeeecceeEEEEcCC--CCEEEEeeCCeEEEEec
Q 014005 314 AESHGSKSFFTEIIASISDIKFAND--GQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l~s~~~~~i~iwd~ 355 (432)
.-.|+.++|.|. +..+++.+|.++++|++
T Consensus 360 -------------t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 360 -------------TREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred -------------ceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 788999999884 55555556699999999
No 157
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.82 E-value=2.3e-17 Score=153.26 Aligned_cols=304 Identities=13% Similarity=0.126 Sum_probs=210.6
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
.+.+.|+++.=+|-=+.+|.|..+|+|.|+++..++.+ .+|+...
T Consensus 200 ~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil---------------------------~sFk~d~-------- 244 (910)
T KOG1539|consen 200 EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL---------------------------MSFKQDW-------- 244 (910)
T ss_pred ccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE---------------------------EEEEccc--------
Confidence 45679999999999999999999999999999998754 6666555
Q ss_pred hhhhcceeEEEEEEcCCCCE-EEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 110 LEIEEKINRVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
+.|++++| ..||+. +++|+..|.+.+||++..++..... +.|. +.+....|-+....+++.
T Consensus 245 ----g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~-nah~-----------~sv~~~~fl~~epVl~ta 306 (910)
T KOG1539|consen 245 ----GRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKKLINVTR-NAHY-----------GSVTGATFLPGEPVLVTA 306 (910)
T ss_pred ----cceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCeeeeeee-cccc-----------CCcccceecCCCceEeec
Confidence 89999999 888875 5666777999999999877443322 2223 678888888888888888
Q ss_pred eeeccceEEEEeecccc-cceeeEEeecCCCCCeeEEEeC-CCCCEEEEE-cCCeEEEEeCCC-----------------
Q 014005 189 EWTENMATKIANVGNSV-HARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEI----------------- 248 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~-~d~~i~lwd~~~----------------- 248 (432)
+. |+.+++|-.+.+. ..+.++.- .+|..+..+++|. .+|..+.++ .|++.+.+++..
T Consensus 307 ~~--DnSlk~~vfD~~dg~pR~LR~R-~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k 383 (910)
T KOG1539|consen 307 GA--DNSLKVWVFDSGDGVPRLLRSR-GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK 383 (910)
T ss_pred cC--CCceeEEEeeCCCCcchheeec-cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence 87 8888888665321 22333433 7888888888887 567666666 777766665510
Q ss_pred ------------------------------------CCceeeEee----------cCCCCcCCCCcceEEEEEcCCCCcE
Q 014005 249 ------------------------------------SDQCFNIVD----------MKPSNMDDLTEVITSAEFHPIYCNL 282 (432)
Q Consensus 249 ------------------------------------~~~~~~~~~----------~~~~~~~~~~~~v~~~~~~p~~~~~ 282 (432)
......+++ +++..+......+++++.++.| ++
T Consensus 384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF 462 (910)
T KOG1539|consen 384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NF 462 (910)
T ss_pred cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ce
Confidence 000001111 1111222234678999999999 99
Q ss_pred EEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec---Ccc
Q 014005 283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY---EPV 358 (432)
Q Consensus 283 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~---~~~ 358 (432)
.+.|...|.|-+|++++|-. ...|... ..|..+|++++...-++.++++ .+|.+++||. .++
T Consensus 463 ~~IG~S~G~Id~fNmQSGi~----r~sf~~~----------~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 463 VFIGYSKGTIDRFNMQSGIH----RKSFGDS----------PAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred EEEeccCCeEEEEEcccCee----ecccccC----------ccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 99999999999999999865 4555310 1138899999999999999986 4599999999 222
Q ss_pred eeEeecceee--------------------ee---------hhhh-hcccccccccceeeEEEEeecccceeeeec
Q 014005 359 MTLSFCGIYV--------------------WI---------LRQL-QHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 359 ~~~~~~~~~~--------------------~~---------~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
..++...+.. .+ +.+. +..++.++.++...-.+++.+.|++|++||
T Consensus 529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 529 KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 3332211100 00 0111 223444444444444799999999999999
No 158
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=1.9e-18 Score=141.58 Aligned_cols=212 Identities=14% Similarity=0.169 Sum_probs=148.9
Q ss_pred cceeEEEEEEcCCCCEEEEEeCC-------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 114 EKINRVRWCAAPNGSMFILSTND-------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
+.|..|+-+| .+.+.|+++-.+ -.+.||.+...... .....-..++.+.+ ..-+.+.++.|.|++..++
T Consensus 64 gEvw~las~P-~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~--S~~~tlE~v~~Ldt-eavg~i~cvew~Pns~kla 139 (370)
T KOG1007|consen 64 GEVWDLASSP-FDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ--SNSSTLECVASLDT-EAVGKINCVEWEPNSDKLA 139 (370)
T ss_pred cceehhhcCC-CCCceEEEEEeccCCCcceeeEEEEecccccCc--cccchhhHhhcCCH-HHhCceeeEEEcCCCCeeE
Confidence 8899998843 344455555331 35789998643211 00000000111111 1225889999999988887
Q ss_pred cceeeccceEEEEeecccccc-eeeE-EeecCCCCCeeEEEeCC--CCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCC
Q 014005 187 HLEWTENMATKIANVGNSVHA-RCQK-VYPHAHDFNINSISNNS--DCETFVSADDLRINLWNLEISDQCFNIVDMKPSN 262 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~-~~~~-~~~~~~~~~i~~~~~~~--~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~ 262 (432)
... +..|.+|++....+. ..+. ....++....++-+|+| +++.+++..|+++..||+++..+...+-
T Consensus 140 sm~---dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~------ 210 (370)
T KOG1007|consen 140 SMD---DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIE------ 210 (370)
T ss_pred Eec---cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchh------
Confidence 765 789999999864331 1111 11134566788889998 6888888899999999999555444332
Q ss_pred cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC-CCE
Q 014005 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQH 341 (432)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d-g~~ 341 (432)
..|...|+.+.|+|+...+|++|+.||.|+|||.|.-+.+ ++.+.+| ..+|+++.|+|. .++
T Consensus 211 -dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p---v~el~~H-------------sHWvW~VRfn~~hdqL 273 (370)
T KOG1007|consen 211 -DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP---VQELPGH-------------SHWVWAVRFNPEHDQL 273 (370)
T ss_pred -hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc---ccccCCC-------------ceEEEEEEecCccceE
Confidence 7888899999999998678999999999999999976654 6788887 889999999996 456
Q ss_pred EEEe-eCCeEEEEec
Q 014005 342 LLSR-DYMNLKVFRY 355 (432)
Q Consensus 342 l~s~-~~~~i~iwd~ 355 (432)
|++| +|..|.+|-.
T Consensus 274 iLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCA 288 (370)
T ss_pred EEecCCCceeEEEec
Confidence 6675 6799999977
No 159
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.8e-18 Score=142.44 Aligned_cols=212 Identities=15% Similarity=0.195 Sum_probs=154.9
Q ss_pred eeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCccee--eeeecCCCCccccccccccccc
Q 014005 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK--KIKEMDHFPFVSSENTLLAEKN 172 (432)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 172 (432)
..+++|. +.|++++| +.||++|++++.|+.|++|+++.-..+ +....+... +-
T Consensus 80 ~~LKgH~------------~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~-----------dh 134 (420)
T KOG2096|consen 80 SVLKGHK------------KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY-----------DH 134 (420)
T ss_pred hhhhccC------------CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC-----------CC
Confidence 4678888 99999999 899999999999999999999764321 111111111 34
Q ss_pred cccccCCCCCcceecceeeccceEEEEeecccccceeeE--------EeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEE
Q 014005 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQK--------VYPHAHDFNINSISNNSDCETFVSA-DDLRINL 243 (432)
Q Consensus 173 i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~l 243 (432)
.+.+.|.|+..-++.... ....+++|.+.....+.... .+...|.-.+..+-...++.+++++ .|..|.+
T Consensus 135 pT~V~FapDc~s~vv~~~-~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~l 213 (420)
T KOG2096|consen 135 PTRVVFAPDCKSVVVSVK-RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICL 213 (420)
T ss_pred ceEEEECCCcceEEEEEc-cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEE
Confidence 567889999776555443 26688888765432222111 1224456667777777888999999 9999999
Q ss_pred EeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccc---cc-cccceeecccccccCC
Q 014005 244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA---LC-DHSARILRDAAESHGS 319 (432)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~---~~-~~~~~~~~~h~~~~~~ 319 (432)
|+++ ++.+..+ ......-...+.||+| +++|+++..-.|++|.+--++ .. ......+.+|
T Consensus 214 w~lk--Gq~L~~i-------dtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH------ 277 (420)
T KOG2096|consen 214 WDLK--GQLLQSI-------DTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH------ 277 (420)
T ss_pred EecC--Cceeeee-------ccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc------
Confidence 9999 7777766 4444455678999999 999999999999999865322 10 0113456666
Q ss_pred ccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005 320 KSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 320 ~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
...|..++||++.+.+++. -||++++||+
T Consensus 278 -------~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 278 -------QSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred -------hhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 8999999999999999996 5599999999
No 160
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=4.2e-18 Score=154.38 Aligned_cols=248 Identities=13% Similarity=0.160 Sum_probs=184.4
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
.|..++|.|||..|+.+..+ .+.+||.+.+... +++++|+
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~ll---------------------------qtLKgHK------------ 53 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLL---------------------------QPLKGHK------------ 53 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccc---------------------------ccccccc------------
Confidence 78999999999988776544 7999999988755 7899999
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceee--------eeecCC---C-------------Ccccccccccc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK--------IKEMDH---F-------------PFVSSENTLLA 169 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~--------~~~~~~---~-------------~~~~~~~~~~~ 169 (432)
+.|++++| +.||+.|++|+.|+.|.+|.-+-....+ ...++. + +...++.+...
T Consensus 54 DtVycVAy--s~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~ks 131 (1081)
T KOG1538|consen 54 DTVYCVAY--AKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKS 131 (1081)
T ss_pred ceEEEEEE--ccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhh
Confidence 99999999 8999999999999999999865321111 001110 0 00114555566
Q ss_pred ccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC-----CEEEEE-cCCeEEE
Q 014005 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-----ETFVSA-DDLRINL 243 (432)
Q Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~l~~~-~d~~i~l 243 (432)
...+.+++|..+|.+++.|.. +|+|.+-+-.........+ +.+..++|.+++|+|.. ..+++. ...++..
T Consensus 132 s~R~~~CsWtnDGqylalG~~--nGTIsiRNk~gEek~~I~R--pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSF 207 (1081)
T KOG1538|consen 132 SSRIICCSWTNDGQYLALGMF--NGTISIRNKNGEEKVKIER--PGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSF 207 (1081)
T ss_pred heeEEEeeecCCCcEEEEecc--CceEEeecCCCCcceEEeC--CCCCCCCceEEEecCCCCCCccceEEEEeccceeEE
Confidence 778889999999999999998 9999998765432222222 24677899999999963 356666 6778888
Q ss_pred EeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccce
Q 014005 244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (432)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~ 323 (432)
+.+. ++.+.. -....-...++.+.|+| .+++.|+.|+.+++|--. |-. +.++...
T Consensus 208 y~Ls--G~~Igk-------~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~-Gvr----LGTvg~~---------- 262 (1081)
T KOG1538|consen 208 YQLS--GKQIGK-------DRALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRD-GVR----LGTVGEQ---------- 262 (1081)
T ss_pred EEec--ceeecc-------cccCCCCchhheeccCC-cEEEEccCCCceEEEeec-CeE----Eeecccc----------
Confidence 8777 433321 02233346789999999 999999999999999844 433 3444432
Q ss_pred eeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005 324 TEIIASISDIKFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 324 ~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
..+|+.++..|++++.+.| .||+|..|++
T Consensus 263 ---D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 263 ---DSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ---ceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 6799999999999999987 6699999999
No 161
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.6e-17 Score=150.89 Aligned_cols=243 Identities=11% Similarity=0.074 Sum_probs=172.2
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
..|.+++| +.+.+.||.+-.||.|.+|++..+=.... .+.++. +..|..++|.+.++++..+. +
T Consensus 26 s~I~slA~--s~kS~~lAvsRt~g~IEiwN~~~~w~~~~-vi~g~~----------drsIE~L~W~e~~RLFS~g~---s 89 (691)
T KOG2048|consen 26 SEIVSLAY--SHKSNQLAVSRTDGNIEIWNLSNNWFLEP-VIHGPE----------DRSIESLAWAEGGRLFSSGL---S 89 (691)
T ss_pred cceEEEEE--eccCCceeeeccCCcEEEEccCCCceeeE-EEecCC----------CCceeeEEEccCCeEEeecC---C
Confidence 78999999 77888899999999999999987532222 122222 47899999996666555544 8
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (432)
|.|.-||+. +.+.+..+ ....+.|++++.+|.+..++.| +||.+..++.. .+...... .+....+.|.+
T Consensus 90 g~i~EwDl~---~lk~~~~~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~-p~~I~~~r-----~l~rq~sRvLs 159 (691)
T KOG2048|consen 90 GSITEWDLH---TLKQKYNI-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG-PDKITYKR-----SLMRQKSRVLS 159 (691)
T ss_pred ceEEEEecc---cCceeEEe-cCCCcceeEEEeCCccceEEeecCCceEEEEecC-CceEEEEe-----ecccccceEEE
Confidence 999999999 77777777 7788899999999999999999 99988888877 44332211 23445688999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEE
Q 014005 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK 351 (432)
Q Consensus 273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~ 351 (432)
+.|+|++ ..++.|+.||.|++||..++... ............. -..-|+++.|-.++ .|++|+. |+|.
T Consensus 160 lsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~----~~~~~~~d~l~k~-----~~~iVWSv~~Lrd~-tI~sgDS~G~V~ 228 (691)
T KOG2048|consen 160 LSWNPTG-TKIAGGSIDGVIRIWDVKSGQTL----HIITMQLDRLSKR-----EPTIVWSVLFLRDS-TIASGDSAGTVT 228 (691)
T ss_pred EEecCCc-cEEEecccCceEEEEEcCCCceE----EEeeecccccccC-----CceEEEEEEEeecC-cEEEecCCceEE
Confidence 9999999 88999999999999999987752 2111100000000 02357888888666 6788866 9999
Q ss_pred EEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 352 VFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 352 iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
+||- ..++.+..|.. .+..+...+..-.++++..|+.+.-|.
T Consensus 229 FWd~~~gTLiqS~~~h~a-----------dVl~Lav~~~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 229 FWDSIFGTLIQSHSCHDA-----------DVLALAVADNEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred EEcccCcchhhhhhhhhc-----------ceeEEEEcCCCCeEEEccCCCceEEEE
Confidence 9999 66666666653 222222222223456666677666665
No 162
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=5.1e-18 Score=141.15 Aligned_cols=240 Identities=13% Similarity=0.181 Sum_probs=172.6
Q ss_pred CCcEEEEEEc-------CCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeec--CCc
Q 014005 32 VDIVSAIEFD-------KTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS--HEP 102 (432)
Q Consensus 32 ~~~V~~~~fs-------p~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--h~~ 102 (432)
.+.|....|- |+-.++|+.+.+.-|++||.-++++- ..+.+ |..
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lr---------------------------aSy~~ydh~d 156 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLR---------------------------ASYRAYDHQD 156 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccc---------------------------cchhhhhhHH
Confidence 4567776664 66778999999999999999888743 22222 221
Q ss_pred cccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEc-cCcceeeeeecCCCCccccccccccccccccccCCCC
Q 014005 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (432)
Q Consensus 103 ~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 181 (432)
++ ..-.+++| +|||.+|+.|- .+.|+++|+ +.|.-........+ .+.-..+.+.+++|+|.
T Consensus 157 e~---------taAhsL~F--s~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~------~k~gq~giisc~a~sP~ 218 (406)
T KOG2919|consen 157 EY---------TAAHSLQF--SPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTK------GKFGQKGIISCFAFSPM 218 (406)
T ss_pred hh---------hhheeEEe--cCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhc------ccccccceeeeeeccCC
Confidence 11 34568999 99999988774 588999999 44431111100000 01112367888999997
Q ss_pred Cc-ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeec
Q 014005 182 FA-HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDM 258 (432)
Q Consensus 182 ~~-~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~ 258 (432)
.. .++.++. ...+-||.-. ...++..+ .+|.+.|+.++|.++|+.|.+| .|..|..||++.....+..+
T Consensus 219 ~~~~~a~gsY--~q~~giy~~~---~~~pl~ll-ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L-- 290 (406)
T KOG2919|consen 219 DSKTLAVGSY--GQRVGIYNDD---GRRPLQLL-GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL-- 290 (406)
T ss_pred CCcceeeecc--cceeeeEecC---CCCceeee-cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh--
Confidence 65 7788887 6777777766 66788888 7999999999999999999998 69999999999666655543
Q ss_pred CCCCcCCCCc-ceEEE--EEcCCCCcEEEEEeCCCeEEEEEccc-cccccccceeecccccccCCccceeeeecceeEEE
Q 014005 259 KPSNMDDLTE-VITSA--EFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIK 334 (432)
Q Consensus 259 ~~~~~~~~~~-~v~~~--~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~ 334 (432)
..|.. .-..| ...|++ ++|++|+.||.|++||+.+ +.. ...+..| ...++.++
T Consensus 291 -----~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~gn~----~sv~~~~-------------sd~vNgvs 347 (406)
T KOG2919|consen 291 -----ERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDLGNE----VSVTGNY-------------SDTVNGVS 347 (406)
T ss_pred -----hhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCCCCc----ccccccc-------------ccccccee
Confidence 44433 22233 456888 9999999999999999987 443 3555554 78899999
Q ss_pred EcCCCCEEEEeeC
Q 014005 335 FANDGQHLLSRDY 347 (432)
Q Consensus 335 ~s~dg~~l~s~~~ 347 (432)
++|--.++|+++-
T Consensus 348 lnP~mpilatssG 360 (406)
T KOG2919|consen 348 LNPIMPILATSSG 360 (406)
T ss_pred cCcccceeeeccC
Confidence 9999888888763
No 163
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=1.2e-17 Score=139.28 Aligned_cols=317 Identities=14% Similarity=0.149 Sum_probs=200.6
Q ss_pred cchhhhhhhhcCCCCCccccCCCcEEEEEEcC-----CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDK-----TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS 85 (432)
Q Consensus 11 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp-----~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (432)
...+|+..... ..|+.+|..++|++ .-+.+|+++.+ .+.||........
T Consensus 24 k~~yk~t~~l~-------ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i------------------ 77 (385)
T KOG1034|consen 24 KRSYKYTNHLK-------EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI------------------ 77 (385)
T ss_pred ccceEeeeehh-------ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce------------------
Confidence 45555554433 45778999999985 23467777664 7899987664311
Q ss_pred cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCC--CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccc
Q 014005 86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS 163 (432)
Q Consensus 86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 163 (432)
+.++.+... ++++....++|+-..+ ..+++.|+.-|.|++.|+.++++.. .+..|.
T Consensus 78 ------r~lq~y~D~----------d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~--~~~ghG---- 135 (385)
T KOG1034|consen 78 ------RLLQSYADE----------DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK--NYRGHG---- 135 (385)
T ss_pred ------eeeeeccCC----------CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc--ceeccC----
Confidence 122222221 1126777888843222 4578888999999999999887433 333444
Q ss_pred ccccccccccccccCCCCC-cceecceeeccceEEEEeecccccceeeEEe--ecCCCCCeeEEEeCCCCCEEEEE-cCC
Q 014005 164 ENTLLAEKNFMNEHNPPSF-AHGYHLEWTENMATKIANVGNSVHARCQKVY--PHAHDFNINSISNNSDCETFVSA-DDL 239 (432)
Q Consensus 164 ~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~-~d~ 239 (432)
+.|..+.+.|+. +++++++. |..|++|+++ +..|+..+ -.+|.+.|.++.|+++|.+++++ .|.
T Consensus 136 -------~sINeik~~p~~~qlvls~Sk--D~svRlwnI~---~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh 203 (385)
T KOG1034|consen 136 -------GSINEIKFHPDRPQLVLSASK--DHSVRLWNIQ---TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH 203 (385)
T ss_pred -------ccchhhhcCCCCCcEEEEecC--CceEEEEecc---CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcc
Confidence 789999999986 56667777 9999999999 88898887 25799999999999999999998 999
Q ss_pred eEEEEeCCCCCceeeEeec------C-------------CC--CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005 240 RINLWNLEISDQCFNIVDM------K-------------PS--NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (432)
Q Consensus 240 ~i~lwd~~~~~~~~~~~~~------~-------------~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 298 (432)
++++|++.. .+....++. + |. +..-|...|-|+.|- | .++++-+-++.|..|..-
T Consensus 204 slk~W~l~~-~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pg 279 (385)
T KOG1034|consen 204 SLKLWRLNV-KEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPG 279 (385)
T ss_pred eEEEEecCh-hHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h-hheeecccCceEEEEecc
Confidence 999999972 111110000 0 00 224466777777775 4 678888889999999873
Q ss_pred ccccccccceeecccccccCC-ccceeeeecceeEEE--EcCCCCEEEEeeC-CeEEEEec---Ccc--eeEeecceeee
Q 014005 299 QSALCDHSARILRDAAESHGS-KSFFTEIIASISDIK--FANDGQHLLSRDY-MNLKVFRY---EPV--MTLSFCGIYVW 369 (432)
Q Consensus 299 ~~~~~~~~~~~~~~h~~~~~~-~~~~~~~~~~v~~~~--~s~dg~~l~s~~~-~~i~iwd~---~~~--~~~~~~~~~~~ 369 (432)
.-+.. +..... +++... ...+.-....|+-+. |.|-+++||.|.. |.+.+||+ ++. .++.-+..
T Consensus 280 kl~e~---~~~vkp-~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~--- 352 (385)
T KOG1034|consen 280 KLEES---IHNVKP-PESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKS--- 352 (385)
T ss_pred hhhhh---hhccCC-CccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccc---
Confidence 21110 010000 000000 000111134455554 4566899999977 99999999 221 12221111
Q ss_pred ehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 370 ILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
...+....+..+...++..+.|+.|.-|+
T Consensus 353 ------~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 353 ------GSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ------cceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 12233333444555677778899999887
No 164
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=7.1e-18 Score=139.38 Aligned_cols=236 Identities=12% Similarity=0.100 Sum_probs=158.7
Q ss_pred ccCCCcEEEEEEcC--CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 29 LQDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 29 ~~h~~~V~~~~fsp--~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
-.|.+.|..+.|.+ -|+.+|+++.|++++||.-...... .++. .+....++....
T Consensus 56 rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~-----------~~~~-------~Wv~~ttl~Dsr----- 112 (361)
T KOG2445|consen 56 RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEE-----------AHGR-------RWVRRTTLVDSR----- 112 (361)
T ss_pred EecCCcEEEEEecCccccceEEEEecCCceeeeeecccccc-----------cccc-------eeEEEEEeecCC-----
Confidence 37889999999975 5899999999999999986422210 1110 234445666555
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccc--ccccccccccCCCC---
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL--LAEKNFMNEHNPPS--- 181 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~--- 181 (432)
..|+++.|+|..-|-+|++++.||.++||+.-... .+...+...++..+.-. .......++.|++.
T Consensus 113 -------ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~--nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~ 183 (361)
T KOG2445|consen 113 -------SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM--NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMH 183 (361)
T ss_pred -------cceeEEEecchhcceEEEEeccCcEEEEEecCCcc--ccccchhhhhhhhccCCcccccCcceEEeecccccc
Confidence 89999999887789899999999999999875432 11111100000000000 11245567778765
Q ss_pred Ccceecceeec---cceEEEEeecccc-cceeeEEeecCCCCCeeEEEeCCC----CCEEEEE-cCCeEEEEeCCCCCc-
Q 014005 182 FAHGYHLEWTE---NMATKIANVGNSV-HARCQKVYPHAHDFNINSISNNSD----CETFVSA-DDLRINLWNLEISDQ- 251 (432)
Q Consensus 182 ~~~~~~~~~~~---~~~v~i~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~-~d~~i~lwd~~~~~~- 251 (432)
..+++.|+... -+.++||...... ....+..+ .+|+..|++++|.|+ -..+|++ .|| |+||.+.....
T Consensus 184 ~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L-~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~ 261 (361)
T KOG2445|consen 184 EPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL-PDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSA 261 (361)
T ss_pred CceEEEEcccCCccccceEEEEecCCcceeeeehhc-CCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccch
Confidence 34666666421 3488899876542 33344456 689999999999996 2367888 899 99999872110
Q ss_pred ----------eeeEeec-CCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccc
Q 014005 252 ----------CFNIVDM-KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (432)
Q Consensus 252 ----------~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 299 (432)
....+++ +...+.+|.+.|+.+.|+-.| .+|++.+.||.||+|...-
T Consensus 262 i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 262 IEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWKANY 319 (361)
T ss_pred hhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEEeecCCCceeeehhhhh
Confidence 0111111 112457899999999999999 9999999999999998664
No 165
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=8.4e-17 Score=128.83 Aligned_cols=230 Identities=14% Similarity=0.119 Sum_probs=159.6
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
.|.+-+++|.+++|++|..+|+|-+..++..... + +..|....+..+++|+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-----s------------a~~~gk~~iv~eqahd------------ 62 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-----S------------AEPPGKLKIVPEQAHD------------ 62 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-----c------------cCCCCCcceeeccccC------------
Confidence 4566789999999999999999999998753211 0 0112233445668998
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
++|+.++| . ..+|++|+ ||.|+-|..+..... .
T Consensus 63 gpiy~~~f--~--d~~Lls~g-dG~V~gw~W~E~~es------------------------------------------~ 95 (325)
T KOG0649|consen 63 GPIYYLAF--H--DDFLLSGG-DGLVYGWEWNEEEES------------------------------------------L 95 (325)
T ss_pred CCeeeeee--e--hhheeecc-CceEEEeeehhhhhh------------------------------------------c
Confidence 99999999 3 34566665 699999987643210 1
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (432)
+.-++|.+.. +.++- .-.-..|+++...|..+.++.+ .|+.++.||++ +++..+.+ .+|+..|.+
T Consensus 96 ~~K~lwe~~~-----P~~~~-~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE-~G~i~r~~-------rGHtDYvH~ 161 (325)
T KOG0649|consen 96 ATKRLWEVKI-----PMQVD-AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE-DGRIQREY-------RGHTDYVHS 161 (325)
T ss_pred cchhhhhhcC-----ccccC-cccCCccceeEeccCCCcEEEecCCeEEEEEEec-CCEEEEEE-------cCCcceeee
Confidence 1112333321 11110 1123479999999987777766 99999999999 78877776 999999999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc--cccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeE
Q 014005 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD--AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350 (432)
Q Consensus 273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i 350 (432)
+.--..+ ..+++|++||++|+||.++++. ++.++. |++... +....+|.+++-+ ..+|++|....+
T Consensus 162 vv~R~~~-~qilsG~EDGtvRvWd~kt~k~----v~~ie~yk~~~~lR-----p~~g~wigala~~--edWlvCGgGp~l 229 (325)
T KOG0649|consen 162 VVGRNAN-GQILSGAEDGTVRVWDTKTQKH----VSMIEPYKNPNLLR-----PDWGKWIGALAVN--EDWLVCGGGPKL 229 (325)
T ss_pred eeecccC-cceeecCCCccEEEEeccccce----eEEeccccChhhcC-----cccCceeEEEecc--CceEEecCCCce
Confidence 9985555 5788999999999999999875 344432 111100 0114567777665 459999887899
Q ss_pred EEEec---CcceeEeecc
Q 014005 351 KVFRY---EPVMTLSFCG 365 (432)
Q Consensus 351 ~iwd~---~~~~~~~~~~ 365 (432)
.+|.+ ++...+.++.
T Consensus 230 slwhLrsse~t~vfpipa 247 (325)
T KOG0649|consen 230 SLWHLRSSESTCVFPIPA 247 (325)
T ss_pred eEEeccCCCceEEEeccc
Confidence 99999 6777777665
No 166
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=4.1e-19 Score=164.61 Aligned_cols=244 Identities=17% Similarity=0.261 Sum_probs=180.3
Q ss_pred ccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
..+.|.++|+|+.|+..|.++++|+.|..++||..++.. +.....||.
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~---------------------------~lAs~rGhs----- 232 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR---------------------------CLASCRGHS----- 232 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchh---------------------------hhccCCCCc-----
Confidence 456789999999999999999999999999999988876 447899999
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
+.|+.++. +.+..++++++.|..|++|.+..+. .+..+.+|. +.|++++|+|-.
T Consensus 233 -------~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~~~--pvsvLrght-----------gavtaiafsP~~---- 286 (1113)
T KOG0644|consen 233 -------GDITDLAV--SSNNTMIAAASNDKVIRVWRLPDGA--PVSVLRGHT-----------GAVTAIAFSPRA---- 286 (1113)
T ss_pred -------cccchhcc--chhhhhhhhcccCceEEEEecCCCc--hHHHHhccc-----------cceeeeccCccc----
Confidence 99999999 7788889999999999999999887 344455666 899999999976
Q ss_pred cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-----------------------------------
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE----------------------------------- 231 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------------------- 231 (432)
+..+||++++||.+-......-+.........+.++.|..++.
T Consensus 287 --sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~ 364 (1113)
T KOG0644|consen 287 --SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDL 364 (1113)
T ss_pred --cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccc
Confidence 2233999999998721110000000000111122222222222
Q ss_pred --EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccce
Q 014005 232 --TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 308 (432)
Q Consensus 232 --~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 308 (432)
+.+++ .+-.+++|++. .++..+.. .+|...+..+.+||-++.+..+++.||...|||+-.|... ..
T Consensus 365 ~~~~~~ar~~~~~~vwnl~-~g~l~H~l-------~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi---k~ 433 (1113)
T KOG0644|consen 365 SSIVVTARNDHRLCVWNLY-TGQLLHNL-------MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI---KH 433 (1113)
T ss_pred cccceeeeeeeEeeeeecc-cchhhhhh-------cccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcc---ee
Confidence 23333 45556667776 55544443 7889999999999998778889999999999999988763 23
Q ss_pred eecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 309 ~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
-+.+| ..+.+.+||+||..++..++ |.++|...
T Consensus 434 y~~gh--------------~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 434 YFIGH--------------GKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred eeccc--------------ceeeccccCCCCceEecCCCCCceEEecc
Confidence 33454 67888999999999999877 99999988
No 167
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=7.5e-18 Score=141.18 Aligned_cols=193 Identities=20% Similarity=0.319 Sum_probs=145.0
Q ss_pred CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEc
Q 014005 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA 124 (432)
Q Consensus 45 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s 124 (432)
..+|++-..|.|+|||..+++.+ ..|+++. ..++.+.|.-.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l---------------------------~~fk~~~------------~~~N~vrf~~~ 81 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL---------------------------EEFKGPP------------ATTNGVRFISC 81 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh---------------------------heecCCC------------CcccceEEecC
Confidence 45888889999999999997644 6888998 88899999532
Q ss_pred CCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeeccc
Q 014005 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (432)
Q Consensus 125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~ 204 (432)
.....+.+|+.||+|++||++..........
T Consensus 82 ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~------------------------------------------------- 112 (376)
T KOG1188|consen 82 DSPHGVISCSSDGTVRLWDIRSQAESARISW------------------------------------------------- 112 (376)
T ss_pred CCCCeeEEeccCCeEEEEEeecchhhhheec-------------------------------------------------
Confidence 2466799999999999999987542111110
Q ss_pred ccceeeEEeecCC-CCCeeEEEeCCCCCEEEEE-----cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCC
Q 014005 205 VHARCQKVYPHAH-DFNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 278 (432)
Q Consensus 205 ~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~-----~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 278 (432)
..+ .....+++.+-.++.+++| .+..+.+||++...+.+..+ ...|...|++++|+|.
T Consensus 113 ----------~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~------~eSH~DDVT~lrFHP~ 176 (376)
T KOG1188|consen 113 ----------TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL------NESHNDDVTQLRFHPS 176 (376)
T ss_pred ----------cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh------hhhccCcceeEEecCC
Confidence 122 2355667777677788876 37789999999555545544 3789999999999999
Q ss_pred CCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC-CEEEE-eeCCeEEEEec
Q 014005 279 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLS-RDYMNLKVFRY 355 (432)
Q Consensus 279 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~s-~~~~~i~iwd~ 355 (432)
.+++|++|+.||.|.+||+..-..-+....++.. ...|..+.|..++ +.|.+ ....+..+|++
T Consensus 177 ~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~--------------~sSI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 177 DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINH--------------GSSIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred CCCeEEeecccceEEeeecCCCcchhhHHHhhcc--------------cceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 9999999999999999999865433333344443 5789999999988 23444 44499999999
No 168
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.2e-17 Score=149.73 Aligned_cols=246 Identities=13% Similarity=0.181 Sum_probs=177.7
Q ss_pred cceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccc
Q 014005 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (432)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (432)
..+...+.||+ +.|.+|+. .|.|.+|++|+.||+|++|.+.++.+.....+.
T Consensus 390 t~~~lvyrGHt------------g~Vr~iSv--dp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-------------- 441 (733)
T KOG0650|consen 390 TRCALVYRGHT------------GLVRSISV--DPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-------------- 441 (733)
T ss_pred ceeeeeEeccC------------CeEEEEEe--cCCcceeeecCCCCcEEEEEeecceEEEEEeec--------------
Confidence 35556789999 99999999 889999999999999999999999876655553
Q ss_pred cccccccCCCCCcceeccee--------------------------------eccceEEEEeecc---cccceeeEEeec
Q 014005 171 KNFMNEHNPPSFAHGYHLEW--------------------------------TENMATKIANVGN---SVHARCQKVYPH 215 (432)
Q Consensus 171 ~~i~~~~~~~~~~~~~~~~~--------------------------------~~~~~v~i~d~~~---~~~~~~~~~~~~ 215 (432)
+.|.+++|+|.+..-+.+.. ..+..+..|.-.. ...+ ++.. -
T Consensus 442 ~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~--v~~~-I 518 (733)
T KOG0650|consen 442 SEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKG--VCIV-I 518 (733)
T ss_pred ceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccc--eEEE-E
Confidence 67888888887543222111 0133455665431 1112 2222 4
Q ss_pred CCCCCeeEEEeCCCCCEEEEE-c---CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCe
Q 014005 216 AHDFNINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 291 (432)
Q Consensus 216 ~~~~~i~~~~~~~~~~~l~~~-~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 291 (432)
.|...|+.+.|+..|.+|++. . ...|.|.++. ....... +....+.|.++.|+|.. .+|++++. ..
T Consensus 519 ~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS-K~~sQ~P-------F~kskG~vq~v~FHPs~-p~lfVaTq-~~ 588 (733)
T KOG0650|consen 519 KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS-KRKSQSP-------FRKSKGLVQRVKFHPSK-PYLFVATQ-RS 588 (733)
T ss_pred ecCCccceeeeecCCceEEEeccCCCcceEEEEecc-cccccCc-------hhhcCCceeEEEecCCC-ceEEEEec-cc
Confidence 688899999999999999986 3 4578888887 2332222 24455679999999998 77777764 47
Q ss_pred EEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec----CcceeEeecce
Q 014005 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY----EPVMTLSFCGI 366 (432)
Q Consensus 292 i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~----~~~~~~~~~~~ 366 (432)
|+|||+..+.+. .+.+.+ ..+|..++.+|.|.-|+.|+. +.+..+|+ ++.++++.|..
T Consensus 589 vRiYdL~kqelv---KkL~tg--------------~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~ 651 (733)
T KOG0650|consen 589 VRIYDLSKQELV---KKLLTG--------------SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK 651 (733)
T ss_pred eEEEehhHHHHH---HHHhcC--------------CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh
Confidence 999999987653 233444 579999999999998888865 99999999 68888888864
Q ss_pred eeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 367 YVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
.+....+....-+.++|+.||.+.||-.
T Consensus 652 -----------avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 652 -----------AVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred -----------hhhhhhhccccceeeeecCCCcEEEEee
Confidence 2233333334445788889999888873
No 169
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.5e-18 Score=153.05 Aligned_cols=260 Identities=12% Similarity=0.095 Sum_probs=186.3
Q ss_pred ccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
....|.+.|+.++|.|....|++++.||+|++|+++..... .....+.+.+|.+|.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s-------------------~~~~~epi~tfraH~----- 344 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS-------------------AEKDVEPILTFRAHE----- 344 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc-------------------cccceeeeEEEeccc-----
Confidence 34578899999999999999999999999999999442210 111456778999999
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--------eeeeeecCCCCccccccccccccccccccC
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--------VKKIKEMDHFPFVSSENTLLAEKNFMNEHN 178 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 178 (432)
++|.|+++ .++++.+++|+-||+|+.|++-... ......+.+|. +.+..+++
T Consensus 345 -------gPVl~v~v--~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ght-----------davw~l~~ 404 (577)
T KOG0642|consen 345 -------GPVLCVVV--PSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHT-----------DAVWLLAL 404 (577)
T ss_pred -------CceEEEEe--cCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccc-----------cceeeeee
Confidence 99999999 8999999999999999999764211 11112233444 77888999
Q ss_pred CCCCcceecceeeccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCCCCCceeeE
Q 014005 179 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNI 255 (432)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~ 255 (432)
+.....+..++. ||++++|+.... .+ .+|. ....+...++.+-... ...++. .-+.--+.+++ ..+.+.+
T Consensus 405 s~~~~~Llscs~--DgTvr~w~~~~~---~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e-v~s~~~~ 477 (577)
T KOG0642|consen 405 SSTKDRLLSCSS--DGTVRLWEPTEE---SP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDME-VVSDLLI 477 (577)
T ss_pred cccccceeeecC--CceEEeeccCCc---Cc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhh-hhhheee
Confidence 999999999988 999999998743 22 2221 1122334455554332 122222 44444455555 3444444
Q ss_pred eecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEE
Q 014005 256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (432)
Q Consensus 256 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~ 335 (432)
+.-...........++.+.++|.+ .+.+++..|+.|+++|..++++ +.....| ...++++++
T Consensus 478 ~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~----l~s~~a~-------------~~svtslai 539 (577)
T KOG0642|consen 478 FESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKI----LHSMVAH-------------KDSVTSLAI 539 (577)
T ss_pred ccccCCCcccccCccceEEecCCC-CeeEecccCCceeccccccccc----chheeec-------------cceecceee
Confidence 421111112223568889999998 8999999999999999999887 5677776 789999999
Q ss_pred cCCCCEEEEeeC-CeEEEEec
Q 014005 336 ANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 336 s~dg~~l~s~~~-~~i~iwd~ 355 (432)
.|+|-+|++++. +.+++|.+
T Consensus 540 ~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 540 DPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred cCCCceEEeecCCceeehhhc
Confidence 999999999855 99999999
No 170
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.78 E-value=7.6e-18 Score=136.31 Aligned_cols=258 Identities=13% Similarity=0.125 Sum_probs=172.8
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeee-cCCccccccc
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLK 108 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~h~~~~~~~~ 108 (432)
.|.+.|+|+.|..+++ |.+|..-|.+++|++.+.... ..+. .|.
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~---------------------------~~~r~~g~------- 56 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL---------------------------PLIRLFGR------- 56 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccc---------------------------hhhhhhcc-------
Confidence 5778999999988776 889999999999999987533 3344 233
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCC-CCccccccccc-------------------
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH-FPFVSSENTLL------------------- 168 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~------------------- 168 (432)
..|+.+.- -|+ ..+.+-++|..+.+|++..+....+...-. +-.+|..+-..
T Consensus 57 -----~~it~lq~--~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~ 128 (323)
T KOG0322|consen 57 -----LFITNLQS--IPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDET 128 (323)
T ss_pred -----ceeeceee--cCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchh
Confidence 67777777 455 578888999999999997643222111100 00111111100
Q ss_pred --------------------cccccccccCCC--CCc-ceecceeeccceEEEEeecccc-------cceeeEEeecCCC
Q 014005 169 --------------------AEKNFMNEHNPP--SFA-HGYHLEWTENMATKIANVGNSV-------HARCQKVYPHAHD 218 (432)
Q Consensus 169 --------------------~~~~i~~~~~~~--~~~-~~~~~~~~~~~~v~i~d~~~~~-------~~~~~~~~~~~~~ 218 (432)
..+.+.+..+.. ... +++.|.. +|.+.+||+.... ..+..... ..|.
T Consensus 129 h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyE--sghvv~wd~S~~~~~~~~~~~~kv~~~~-ash~ 205 (323)
T KOG0322|consen 129 HKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYE--SGHVVIWDLSTGDKIIQLPQSSKVESPN-ASHK 205 (323)
T ss_pred hhhccCccceeEccCchhccccCceeeeeccccccceEEEEEecc--CCeEEEEEccCCceeeccccccccccch-hhcc
Confidence 112222222211 111 3334444 8899999998420 00111222 5688
Q ss_pred CCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (432)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~ 297 (432)
.++.++.+.+....=++| .+..+..|.++.....+.+- . ...-..-.|..+..-||+ +++|+++.|++||+|..
T Consensus 206 qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~---~-e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVysw 280 (323)
T KOG0322|consen 206 QPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR---K-EITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSW 280 (323)
T ss_pred CcceeeeechhhcCCcCCCccccceeeeeccccCccccc---c-eEEecCCCccceEEccCC-cEEeecccCCcEEEEEe
Confidence 999999998765544556 67788899988432222210 0 112223458889999999 99999999999999999
Q ss_pred cccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 298 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~ 355 (432)
++... +..++.| .+.|++++|+|+...+|+++ |++|.+|++
T Consensus 281 rtl~p----LAVLkyH-------------sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 281 RTLNP----LAVLKYH-------------SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCc----hhhhhhh-------------hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99886 7888887 89999999999988999875 499999986
No 171
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.78 E-value=5.9e-17 Score=151.17 Aligned_cols=283 Identities=14% Similarity=0.171 Sum_probs=185.1
Q ss_pred cchhhhhhhhcCCCCCccccCCCcEEEEEEcCC-CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccC
Q 014005 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP 89 (432)
Q Consensus 11 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~-g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 89 (432)
.+.|.+.... ..-..+.-...|+|+.|+|. ..++|.|..+|.|.+||+..+....
T Consensus 224 ~~vW~~~~p~---~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~--------------------- 279 (555)
T KOG1587|consen 224 LLVWSLKNPN---TPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP--------------------- 279 (555)
T ss_pred EEEEecCCCC---CceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---------------------
Confidence 4556655431 22233445778999999995 4577888999999999998865320
Q ss_pred CcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccc
Q 014005 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (432)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (432)
..........|. .+++.+.|..++.+.-|++++.||.|..|+++.-.... .........-...+.-.
T Consensus 280 ~s~ls~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~-e~~~~~~~~~~~~~~~~ 346 (555)
T KOG1587|consen 280 PSGLSALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPV-EGLLLESKKHKGQQSSK 346 (555)
T ss_pred CcccccccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccch-hhccccccccccccccc
Confidence 000111233466 89999999765555669999999999999876432100 00000000000001112
Q ss_pred ccccccccCCCCC-cceecceeeccceEEEEeeccc-ccc----eeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEE
Q 014005 170 EKNFMNEHNPPSF-AHGYHLEWTENMATKIANVGNS-VHA----RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRIN 242 (432)
Q Consensus 170 ~~~i~~~~~~~~~-~~~~~~~~~~~~~v~i~d~~~~-~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~ 242 (432)
...+..+.|.+.. ..++.|+. .|.|.--+.... ... +....+ ..|.+.|+++.++|=+..+... .|.+++
T Consensus 347 ~~~~t~~~F~~~~p~~FiVGTe--~G~v~~~~r~g~~~~~~~~~~~~~~~-~~h~g~v~~v~~nPF~~k~fls~gDW~vr 423 (555)
T KOG1587|consen 347 AVGATSLKFEPTDPNHFIVGTE--EGKVYKGCRKGYTPAPEVSYKGHSTF-ITHIGPVYAVSRNPFYPKNFLSVGDWTVR 423 (555)
T ss_pred ccceeeEeeccCCCceEEEEcC--CcEEEEEeccCCcccccccccccccc-cccCcceEeeecCCCccceeeeeccceeE
Confidence 3566777787654 34555665 676655333221 111 223334 5788999999999976655544 899999
Q ss_pred EEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccc
Q 014005 243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (432)
Q Consensus 243 lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~ 322 (432)
||.......++..+ ..+...+++++|||..+.+|+++..||.+.+||+....... .....-+
T Consensus 424 iWs~~~~~~Pl~~~-------~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P--v~s~~~~--------- 485 (555)
T KOG1587|consen 424 IWSEDVIASPLLSL-------DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP--VLSQKVC--------- 485 (555)
T ss_pred eccccCCCCcchhh-------hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC--ccccccc---------
Confidence 99987333344333 66677799999999998999999999999999998654311 2222221
Q ss_pred eeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 323 FTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 323 ~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
......+.|+++|+.|+.|++ |++.+|++
T Consensus 486 ----~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 486 ----SPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred ----ccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 356678889999999999988 99999999
No 172
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=1.3e-16 Score=136.78 Aligned_cols=166 Identities=13% Similarity=0.200 Sum_probs=131.5
Q ss_pred CCcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 32 VDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 32 ~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
..+|..+.|.++.. .||||+.|..|+||.++...... ..+..++...+..|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~------------------~~~~V~y~s~Ls~H~--------- 65 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG------------------GDMKVEYLSSLSRHT--------- 65 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCC------------------CceeEEEeecccCCc---------
Confidence 45899999999877 99999999999999998765320 001345667788898
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEcc--------C------cceeeeeecCCCCccccccccccccccccc
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR--------D------QKVKKIKEMDHFPFVSSENTLLAEKNFMNE 176 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~--------~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 176 (432)
..|+++.| +|+|+.+++|+.+|.|.+|... + ...........|. ..+..+
T Consensus 66 ---~aVN~vRf--~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~-----------~diydL 129 (434)
T KOG1009|consen 66 ---RAVNVVRF--SPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHR-----------DDIYDL 129 (434)
T ss_pred ---ceeEEEEE--cCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccc-----------cchhhh
Confidence 99999999 8999999999999999999876 2 1122233333444 789999
Q ss_pred cCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 014005 177 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL 246 (432)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~ 246 (432)
+|++++.++.+++. |+.+++||+. .+.....+ .+|...+..++|.|-++++++- .|...+.+.+
T Consensus 130 ~Ws~d~~~l~s~s~--dns~~l~Dv~---~G~l~~~~-~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~ 194 (434)
T KOG1009|consen 130 AWSPDSNFLVSGSV--DNSVRLWDVH---AGQLLAIL-DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSA 194 (434)
T ss_pred hccCCCceeeeeec--cceEEEEEec---cceeEeec-cccccccceeecchhhhhhhhhccCcccceeee
Confidence 99999999999999 9999999999 77888877 8898899999999888877765 5554444443
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=2.6e-17 Score=140.41 Aligned_cols=239 Identities=11% Similarity=0.147 Sum_probs=178.7
Q ss_pred CccccCCCcEEEEEEcCCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005 26 DEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (432)
Q Consensus 26 ~~~~~h~~~V~~~~fsp~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~ 104 (432)
+.--+|+++|..++|+|-. ..||+||.|.+|.||++-.+.+. .+-.+++..+.||+
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~--------------------~~ltepvv~L~gH~--- 131 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT--------------------RDLTEPVVELYGHQ--- 131 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccc--------------------cCcccceEEEeecc---
Confidence 3445799999999999954 57899999999999998765432 12345678899999
Q ss_pred cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
..|.-++|+|. -.+.|++++.|++|.+|++.+++.... +. |+ .-|.++.|+.++..
T Consensus 132 ---------rrVg~V~wHPt-A~NVLlsag~Dn~v~iWnv~tgeali~--l~-hp-----------d~i~S~sfn~dGs~ 187 (472)
T KOG0303|consen 132 ---------RRVGLVQWHPT-APNVLLSAGSDNTVSIWNVGTGEALIT--LD-HP-----------DMVYSMSFNRDGSL 187 (472)
T ss_pred ---------eeEEEEeeccc-chhhHhhccCCceEEEEeccCCceeee--cC-CC-----------CeEEEEEeccCCce
Confidence 99999999653 345789999999999999999983332 33 55 78999999999999
Q ss_pred eecceeeccceEEEEeecccccceeeEEeecCCCC-CeeEEEeCCCCCEEEEE----cCCeEEEEeCCCCCceeeEeecC
Q 014005 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF-NINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMK 259 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~----~d~~i~lwd~~~~~~~~~~~~~~ 259 (432)
+.+... |..|+|||.+ +++.+..- .+|.+ .-.-+.|-.++..+.+| ++.++-+||...-...+...
T Consensus 188 l~Ttck--DKkvRv~dpr---~~~~v~e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~--- 258 (472)
T KOG0303|consen 188 LCTTCK--DKKVRVIDPR---RGTVVSEG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ--- 258 (472)
T ss_pred eeeecc--cceeEEEcCC---CCcEeeec-ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeE---
Confidence 999999 9999999999 66666665 45654 34456677888877777 38899999987444433221
Q ss_pred CCCcCCCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005 260 PSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (432)
Q Consensus 260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d 338 (432)
. ...++.|.---|+|+. .++..++ .|+.|+-|.+.......+.+..|+. ..+-..+.|-|.
T Consensus 259 --e-lDtSnGvl~PFyD~dt-~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S--------------~epQRG~g~mPK 320 (472)
T KOG0303|consen 259 --E-LDTSNGVLLPFYDPDT-SIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS--------------KEPQRGMGFMPK 320 (472)
T ss_pred --E-eccCCceEEeeecCCC-CEEEEEecCCcceEEEEecCCCceeEEeccccc--------------CCcccccccccc
Confidence 1 2334557777788988 6665554 8999999999876654445566665 356667777775
No 174
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=8e-17 Score=137.43 Aligned_cols=266 Identities=8% Similarity=0.060 Sum_probs=181.7
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
.+.|.+.|.++.|+.++++||+|+.|..+++|+++..-.-+ ..+++ .+.+|.
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k---------------------~~KPI-~~~~~~------ 103 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK---------------------TPKPI-GVMEHP------ 103 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc---------------------CCCCc-eeccCc------
Confidence 46789999999999999999999999999999987532110 01122 233332
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
+...|.+++| ...+.++++|..+++|.+.|+++.+...+...+... +.|+.+..+|....++.
T Consensus 104 ----H~SNIF~L~F--~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~-----------~~VY~m~~~P~DN~~~~ 166 (609)
T KOG4227|consen 104 ----HRSNIFSLEF--DLENRFLYSGERWGTVIKHDIETKQSIYVANENNNR-----------GDVYHMDQHPTDNTLIV 166 (609)
T ss_pred ----cccceEEEEE--ccCCeeEecCCCcceeEeeecccceeeeeecccCcc-----------cceeecccCCCCceEEE
Confidence 1178999999 778889999999999999999998866666665555 78999999999888888
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
.+. ++.|.+||.+.....-..-.. .........+.|+|... ++++. ..+.+.+||++.....+.....- ..++.
T Consensus 167 ~t~--~~~V~~~D~Rd~~~~~~~~~~-AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~-~~L~~ 242 (609)
T KOG4227|consen 167 VTR--AKLVSFIDNRDRQNPISLVLP-ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMF-KGLPQ 242 (609)
T ss_pred Eec--CceEEEEeccCCCCCCceeee-cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhcc-ccCcc
Confidence 888 999999999854211111111 34456778899999755 45566 88899999999544433221000 01111
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc-cccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
....-.++.|+|.| +.|++--....-.+||+-+.+. -.|+. | .+. ..+ ....+.+++|..|-. +++
T Consensus 243 ~~~~~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~R~-----~V~k~D~--N~~--GY~--N~~T~KS~~F~~D~~-v~t 309 (609)
T KOG4227|consen 243 ENTEWMGSLWSPSG-NQFMSIRRGKCPLYFDFISQRC-----FVLKSDH--NPN--GYC--NIKTIKSMTFIDDYT-VAT 309 (609)
T ss_pred cchhhhheeeCCCC-CeehhhhccCCCEEeeeecccc-----eeEeccC--CCC--cce--eeeeeeeeeeeccee-eec
Confidence 11223678999999 6666655555556788876543 23322 2 000 000 134677888887654 888
Q ss_pred eeC-CeEEEEec
Q 014005 345 RDY-MNLKVFRY 355 (432)
Q Consensus 345 ~~~-~~i~iwd~ 355 (432)
|+| -.|++|.+
T Consensus 310 GSD~~~i~~Wkl 321 (609)
T KOG4227|consen 310 GSDHWGIHIWKL 321 (609)
T ss_pred cCcccceEEEec
Confidence 877 89999999
No 175
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.76 E-value=1.5e-17 Score=150.03 Aligned_cols=203 Identities=16% Similarity=0.224 Sum_probs=151.5
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
..|+++.|.| -|.+.|++++.||.|++|.+..+.+...
T Consensus 628 t~vtDl~WdP-FD~~rLAVa~ddg~i~lWr~~a~gl~e~----------------------------------------- 665 (1012)
T KOG1445|consen 628 TLVTDLHWDP-FDDERLAVATDDGQINLWRLTANGLPEN----------------------------------------- 665 (1012)
T ss_pred ceeeecccCC-CChHHeeecccCceEEEEEeccCCCCcc-----------------------------------------
Confidence 5799999954 4678899999999999999976552221
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceE
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (432)
...+...+ ..|...|+++.|+|- ...|+++ .|-+|++||++.... ... +.+|.+.|.
T Consensus 666 ------------~~tPe~~l-t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-~~~-------l~gHtdqIf 724 (1012)
T KOG1445|consen 666 ------------EMTPEKIL-TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-YSR-------LVGHTDQIF 724 (1012)
T ss_pred ------------cCCcceee-ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-hhe-------eccCcCcee
Confidence 22334444 789999999999994 5567788 999999999994333 322 389999999
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-ee----
Q 014005 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RD---- 346 (432)
Q Consensus 272 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~---- 346 (432)
+++|+|+| +.+|+.+.||+|++|+.++++. ...++. .+. ...-..+.|.-||+++++ |-
T Consensus 725 ~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~-----pv~Eg~--gpv--------gtRgARi~wacdgr~viv~Gfdk~S 788 (1012)
T KOG1445|consen 725 GIAWSPDG-RRIATVCKDGTLRVYEPRSREQ-----PVYEGK--GPV--------GTRGARILWACDGRIVIVVGFDKSS 788 (1012)
T ss_pred EEEECCCC-cceeeeecCceEEEeCCCCCCC-----ccccCC--CCc--------cCcceeEEEEecCcEEEEecccccc
Confidence 99999999 9999999999999999998774 333331 000 123346788999999876 42
Q ss_pred CCeEEEEec-----CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 347 YMNLKVFRY-----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 347 ~~~i~iwd~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
...|.+||. .++.+....- ..+.+...|..+....++||.-|..|..|.
T Consensus 789 eRQv~~Y~Aq~l~~~pl~t~~lDv---------aps~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 789 ERQVQMYDAQTLDLRPLYTQVLDV---------APSPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred hhhhhhhhhhhccCCcceeeeecc---------cCccccccccCCCceEEEecCCCceEEEEE
Confidence 278899988 4555544433 244555566667777899999999999998
No 176
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=9.1e-16 Score=130.19 Aligned_cols=234 Identities=14% Similarity=0.170 Sum_probs=165.1
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
...+..+.|+.+...|..|+.|| -++|+.+..... .......
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~---------------------------~~~~~~~---------- 46 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC---------------------------FSKDTEG---------- 46 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh---------------------------hcccCCC----------
Confidence 44678888999999999999997 578887653210 0000011
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCC--CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
..|.-+-| + ..+++..+.+ +.+++.+.+.+....-..+. ..|.++.++.+.-.+..
T Consensus 47 --~~IvEmLF--S--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp--------------t~IL~VrmNr~RLvV~L-- 104 (391)
T KOG2110|consen 47 --VSIVEMLF--S--SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFP--------------TSILAVRMNRKRLVVCL-- 104 (391)
T ss_pred --eEEEEeec--c--cceeEEEecCCCceEEEEEcccCceEEEEecC--------------CceEEEEEccceEEEEE--
Confidence 23444445 3 4466555443 45888888766532222221 45666666655433322
Q ss_pred eeccceEEEEeecccccceeeEEeec--CCCCCeeEEEeCCCCCEEEEE---cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPH--AHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~---~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (432)
...+.|||++ ..+.+.++.. .+...+.++++++.+.+++.- ..|.|.+||.. +-+....+ .
T Consensus 105 ---ee~IyIydI~---~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~-nl~~v~~I-------~ 170 (391)
T KOG2110|consen 105 ---EESIYIYDIK---DMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI-NLQPVNTI-------N 170 (391)
T ss_pred ---cccEEEEecc---cceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcc-cceeeeEE-------E
Confidence 4569999999 6677766632 355567777777778888853 68999999999 66677666 8
Q ss_pred CCCcceEEEEEcCCCCcEEEEEeCCCe-EEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005 265 DLTEVITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (432)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 343 (432)
.|.+.+-+++|+++| .+||+++..|+ ||++.+.+|+. +..|+--. ....|.+++|+||+++|+
T Consensus 171 aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~k----l~eFRRG~-----------~~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 171 AHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQK----LYEFRRGT-----------YPVSIYSLSFSPDSQFLA 234 (391)
T ss_pred ecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccE----eeeeeCCc-----------eeeEEEEEEECCCCCeEE
Confidence 999999999999999 99999999996 69999999886 45554310 135789999999999999
Q ss_pred EeeC-CeEEEEec
Q 014005 344 SRDY-MNLKVFRY 355 (432)
Q Consensus 344 s~~~-~~i~iwd~ 355 (432)
+.++ ++|.+|.+
T Consensus 235 ~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 235 ASSNTETVHIFKL 247 (391)
T ss_pred EecCCCeEEEEEe
Confidence 8766 99999999
No 177
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.76 E-value=2e-17 Score=137.95 Aligned_cols=255 Identities=13% Similarity=0.206 Sum_probs=179.9
Q ss_pred cCCCcEEEEEEcCC----CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 30 ~h~~~V~~~~fsp~----g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
.|...-..++|+-+ ..+||.|+.-|.|+|.|+.+++.. ..+.+|.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~---------------------------~~~~ghG---- 135 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS---------------------------KNYRGHG---- 135 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc---------------------------cceeccC----
Confidence 45566777777653 358999999999999999887643 6788998
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCccee-eeeecCCCCccccccccccccccccccCCCCCcc
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
..|+.|.++| .+.+++++++.|..|++|++++..+. .+....+|. +.|.++.|+.++.+
T Consensus 136 --------~sINeik~~p-~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHr-----------deVLSvD~~~~gd~ 195 (385)
T KOG1034|consen 136 --------GSINEIKFHP-DRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHR-----------DEVLSVDFSLDGDR 195 (385)
T ss_pred --------ccchhhhcCC-CCCcEEEEecCCceEEEEeccCCeEEEEeccccccc-----------CcEEEEEEcCCCCe
Confidence 9999999954 34578999999999999999998854 455667777 89999999999999
Q ss_pred eecceeeccceEEEEeecccc---cceee-------------------EEe--ecCCCCCeeEEEeCCCCCEEEEE-cCC
Q 014005 185 GYHLEWTENMATKIANVGNSV---HARCQ-------------------KVY--PHAHDFNINSISNNSDCETFVSA-DDL 239 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~---~~~~~-------------------~~~--~~~~~~~i~~~~~~~~~~~l~~~-~d~ 239 (432)
+++++. |.++++|++.... .-++. ..| ..-|...|-|+.|- |+++++- -++
T Consensus 196 i~ScGm--Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscen 271 (385)
T KOG1034|consen 196 IASCGM--DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCEN 271 (385)
T ss_pred eeccCC--cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCc
Confidence 999999 9999999987210 00000 000 12355555566654 4567765 688
Q ss_pred eEEEEeCCCCCceeeEeecCCC--------CcCCCCcceEE--EEEcCCCCcEEEEEeCCCeEEEEEcccccccccccee
Q 014005 240 RINLWNLEISDQCFNIVDMKPS--------NMDDLTEVITS--AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 309 (432)
Q Consensus 240 ~i~lwd~~~~~~~~~~~~~~~~--------~~~~~~~~v~~--~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 309 (432)
.|..|....-++.+.. ++|. .+.-....|+- .+|+|-+ ++||.|...|.|.+||++...... ..+
T Consensus 272 aI~~w~pgkl~e~~~~--vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~--~tt 346 (385)
T KOG1034|consen 272 AIVCWKPGKLEESIHN--VKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPPK--CTT 346 (385)
T ss_pred eEEEEecchhhhhhhc--cCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCcc--Cce
Confidence 9999988322333221 1111 11222334444 4567777 899999999999999999765421 122
Q ss_pred ecccccccCCccceeeeecceeEEEEcCCCCEEEE-eeCCeEEEEec
Q 014005 310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNLKVFRY 355 (432)
Q Consensus 310 ~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~~~i~iwd~ 355 (432)
+..+ .....|...+||.||..|+. +++++|.-||.
T Consensus 347 l~~s-----------~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 347 LTHS-----------KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred EEec-----------cccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 2221 01467899999999998887 56699998885
No 178
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.1e-18 Score=164.43 Aligned_cols=213 Identities=15% Similarity=0.228 Sum_probs=162.5
Q ss_pred ccCCCcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 29 LQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
-.|++.|..+.|++.+. .||+|+.||.|.|||+++-+.. ++|. -+.-.
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP-------------------~~~~------~~~~~------ 161 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP-------------------FTPG------SQAPP------ 161 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC-------------------CCCC------CCCCc------
Confidence 36899999999999765 9999999999999999885432 0000 01122
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce-e
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG-Y 186 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~ 186 (432)
+.|.+++|. ....+.|++++.+|.+.|||++..+ .+..+..+. ....+..++|+|+...- +
T Consensus 162 ------~eI~~lsWN-rkvqhILAS~s~sg~~~iWDlr~~~--pii~ls~~~---------~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 162 ------SEIKCLSWN-RKVSHILASGSPSGRAVIWDLRKKK--PIIKLSDTP---------GRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred ------ccceEeccc-hhhhHHhhccCCCCCceeccccCCC--cccccccCC---------CccceeeeeeCCCCceeee
Confidence 789999994 2345678899999999999998775 333332222 11346689999986543 3
Q ss_pred cceeec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005 187 HLEWTE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (432)
Q Consensus 187 ~~~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (432)
.++... .-.|.+||++. ...+++++ .+|...|.++.|++.+ ++++++ .|+.|.+|+.+ +++.+..+
T Consensus 224 ~As~dd~~PviqlWDlR~--assP~k~~-~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~-tgEvl~~~------- 292 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRF--ASSPLKIL-EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN-TGEVLGEL------- 292 (1049)
T ss_pred eecCCCCCceeEeecccc--cCCchhhh-cccccceeeeccCCCCchhhhcccCCCCeeEecCC-CceEeeec-------
Confidence 333211 33899999986 55677888 8999999999999977 677777 99999999999 67777655
Q ss_pred CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccc
Q 014005 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 301 (432)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 301 (432)
....+++..+.|+|..+.+|++++.||.|.|+.+....
T Consensus 293 p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 293 PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 66778999999999997799999999999999998654
No 179
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=7.6e-16 Score=127.92 Aligned_cols=272 Identities=10% Similarity=0.071 Sum_probs=182.4
Q ss_pred cccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccccc
Q 014005 9 SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH 88 (432)
Q Consensus 9 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (432)
.....|+|.. |+ .....-.|..+|+|++||++|+.|+|++.|..|.+||+..+..+
T Consensus 45 G~vvI~D~~T-~~--iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l--------------------- 100 (405)
T KOG1273|consen 45 GRVVIYDFDT-FR--IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL--------------------- 100 (405)
T ss_pred CcEEEEEccc-cc--hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce---------------------
Confidence 3455566652 22 12222378899999999999999999999999999999887533
Q ss_pred CCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccc
Q 014005 89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (432)
Q Consensus 89 p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (432)
..+. .+.+|+...|+|...+. ++.+-.+..-.+-++..+....+..-....
T Consensus 101 ------~rir-------------f~spv~~~q~hp~k~n~-~va~~~~~sp~vi~~s~~~h~~Lp~d~d~d--------- 151 (405)
T KOG1273|consen 101 ------KRIR-------------FDSPVWGAQWHPRKRNK-CVATIMEESPVVIDFSDPKHSVLPKDDDGD--------- 151 (405)
T ss_pred ------eEEE-------------ccCccceeeeccccCCe-EEEEEecCCcEEEEecCCceeeccCCCccc---------
Confidence 2221 12789999997644443 333333444555565544322222111111
Q ss_pred cccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCC
Q 014005 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 247 (432)
Q Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~ 247 (432)
.+..-.+..|.+.++++++|.. .|.+.+++.. +.+|+..++......|..+.++..|+.|+.- .|..|+.|+++
T Consensus 152 ln~sas~~~fdr~g~yIitGts--KGkllv~~a~---t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 152 LNSSASHGVFDRRGKYIITGTS--KGKLLVYDAE---TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred cccccccccccCCCCEEEEecC--cceEEEEecc---hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 0122233468899999999998 9999999999 7788888733334789999999999999998 99999999987
Q ss_pred CCCceeeEeecCCC-CcCC--CCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccceeecccccccCCccce
Q 014005 248 ISDQCFNIVDMKPS-NMDD--LTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (432)
Q Consensus 248 ~~~~~~~~~~~~~~-~~~~--~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~ 323 (432)
.-...-+-..+.+. .++. ..-.-.+++|+.+| .++..++ ....++||....|.+ ++.+.|. .
T Consensus 227 di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg-eYv~a~s~~aHaLYIWE~~~GsL----VKILhG~-k-------- 292 (405)
T KOG1273|consen 227 DIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG-EYVCAGSARAHALYIWEKSIGSL----VKILHGT-K-------- 292 (405)
T ss_pred hhcccCccCCcChhHHHHHHHhhhhhhheeecCCc-cEEEeccccceeEEEEecCCcce----eeeecCC-c--------
Confidence 10000000000000 0000 11234578899999 6665554 556799999999988 7888883 1
Q ss_pred eeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 324 TEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 324 ~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
.....++.|+|-...+++-..|.+++|..
T Consensus 293 ---gE~l~DV~whp~rp~i~si~sg~v~iw~~ 321 (405)
T KOG1273|consen 293 ---GEELLDVNWHPVRPIIASIASGVVYIWAV 321 (405)
T ss_pred ---hhheeecccccceeeeeeccCCceEEEEe
Confidence 25677899999998998876699999988
No 180
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=3.6e-16 Score=128.40 Aligned_cols=210 Identities=8% Similarity=0.160 Sum_probs=154.6
Q ss_pred ccccCCCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 27 EELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 27 ~~~~h~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
+.-++.+++++..|+. +-++|.+.+-|-+..|||++++.. ....+++-+|.
T Consensus 145 kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~------------------------~~vkTQLIAHD---- 196 (364)
T KOG0290|consen 145 KNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS------------------------GTVKTQLIAHD---- 196 (364)
T ss_pred cccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc------------------------cceeeEEEecC----
Confidence 3445677899999986 557889999999999999998742 23446788898
Q ss_pred ccchhhhhcceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005 106 YLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
+.|..++| ... -+.|++.+.||.|++||++..+-..+
T Consensus 197 --------KEV~DIaf--~~~s~~~FASvgaDGSvRmFDLR~leHSTI-------------------------------- 234 (364)
T KOG0290|consen 197 --------KEVYDIAF--LKGSRDVFASVGADGSVRMFDLRSLEHSTI-------------------------------- 234 (364)
T ss_pred --------cceeEEEe--ccCccceEEEecCCCcEEEEEecccccceE--------------------------------
Confidence 99999999 443 45789999999999999986541111
Q ss_pred eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC-CEEEEE--cCCeEEEEeCCCCCceeeEeecCCC
Q 014005 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA--DDLRINLWNLEISDQCFNIVDMKPS 261 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~ 261 (432)
||.- .........++|+++. +++|+- +...|.+.|++.....+..+
T Consensus 235 -------------IYE~-------------p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L----- 283 (364)
T KOG0290|consen 235 -------------IYED-------------PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL----- 283 (364)
T ss_pred -------------EecC-------------CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh-----
Confidence 2211 1113456678888754 456654 67789999999766666544
Q ss_pred CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc--ccccceeecccccccCCccceeeeecceeEEEEcC-C
Q 014005 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--CDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-D 338 (432)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-d 338 (432)
.+|.+.|+.++|.|..+..|++|+.|..+-+||+.+... ....+..+.. .+.|+.+.|++ .
T Consensus 284 --~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a--------------~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 284 --RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA--------------GGEVNQIQWSSSQ 347 (364)
T ss_pred --hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc--------------cceeeeeeecccC
Confidence 999999999999999889999999999999999986432 1111122222 57899999996 4
Q ss_pred CCEEEEeeCCeEEEE
Q 014005 339 GQHLLSRDYMNLKVF 353 (432)
Q Consensus 339 g~~l~s~~~~~i~iw 353 (432)
+.+++.+..+++.+-
T Consensus 348 ~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 348 PDWIAICFGKKLEIL 362 (364)
T ss_pred CCEEEEEecCeeeEE
Confidence 789998866666554
No 181
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=8.5e-16 Score=127.97 Aligned_cols=213 Identities=14% Similarity=0.181 Sum_probs=169.2
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
..+|+|.+|++++..+|++.....|.||...+.. -++...+++.|.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~------------------------~w~~~htls~Hd---------- 55 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD------------------------LWEPAHTLSEHD---------- 55 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC------------------------CceeceehhhhC----------
Confidence 3589999999999999999999999999988765 245667888898
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEc-cCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
..|+.+.| +|..+.|++++.|+.-++|.. ..++.++...+.... ...+++.|+|....++.|+.
T Consensus 56 --~~vtgvdW--ap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiN-----------rAAt~V~WsP~enkFAVgSg 120 (361)
T KOG1523|consen 56 --KIVTGVDW--APKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRIN-----------RAATCVKWSPKENKFAVGSG 120 (361)
T ss_pred --cceeEEee--cCCCCceeEccCCCCccccccCCCCeeccceeEEEec-----------cceeeEeecCcCceEEeccC
Confidence 99999999 889999999999999999999 666655544433333 78899999999999999988
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC--------
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-------- 261 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~-------- 261 (432)
...+.+|-++.....-.-+.++..+.+.|.+++|+|++-++++| .|+.++++..-. +-++.+|.
T Consensus 121 --ar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayI-----K~Vdekpap~pWgsk~ 193 (361)
T KOG1523|consen 121 --ARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYI-----KGVDEKPAPTPWGSKM 193 (361)
T ss_pred --ccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEee-----eccccCCCCCCCccCC
Confidence 78888988876544433333335677889999999999999999 899999986531 11111111
Q ss_pred -------CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccc
Q 014005 262 -------NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 301 (432)
Q Consensus 262 -------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 301 (432)
......+++..+.|+|+| ..|+..+.|..+.+-|.....
T Consensus 194 PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 194 PFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cHHHHHHhhccCCCceeeeEeCCCC-CEeeEecCCCceEEeecCCCc
Confidence 112456789999999999 999999999999999977543
No 182
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.1e-16 Score=137.98 Aligned_cols=203 Identities=15% Similarity=0.181 Sum_probs=148.3
Q ss_pred EEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcc
Q 014005 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (432)
Q Consensus 36 ~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (432)
.+++|+++|..|++|+.||++|||+....... .....|. +.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~---------------------------l~e~~~~------------~e 188 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI---------------------------LEEIAHH------------AE 188 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh---------------------------hhhHhhc------------Cc
Confidence 78999999999999999999999997665422 3455666 89
Q ss_pred eeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC---cceecceeec
Q 014005 116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF---AHGYHLEWTE 192 (432)
Q Consensus 116 v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~ 192 (432)
|.++.| +|||+.|++-+.| ..+||+.+++.......- ...+..+..+.|..+. .+........
T Consensus 189 V~DL~F--S~dgk~lasig~d-~~~VW~~~~g~~~a~~t~-----------~~k~~~~~~cRF~~d~~~~~l~laa~~~~ 254 (398)
T KOG0771|consen 189 VKDLDF--SPDGKFLASIGAD-SARVWSVNTGAALARKTP-----------FSKDEMFSSCRFSVDNAQETLRLAASQFP 254 (398)
T ss_pred ccccee--CCCCcEEEEecCC-ceEEEEeccCchhhhcCC-----------cccchhhhhceecccCCCceEEEEEecCC
Confidence 999999 9999999999999 899999998842211111 1123556677777665 3333333333
Q ss_pred cceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005 193 NMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (432)
.+.++.|++.........+..+ ......|.+++++++|++++.| .||.|-+++.. .-+++..+ -+.|...|
T Consensus 255 ~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~-~lq~~~~v------k~aH~~~V 327 (398)
T KOG0771|consen 255 GGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAK-SLQRLQYV------KEAHLGFV 327 (398)
T ss_pred CCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEec-eeeeeEee------hhhheeee
Confidence 5566666655321111111110 1234479999999999999999 99999999998 45555544 27899999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccc
Q 014005 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (432)
Q Consensus 271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 299 (432)
+.+.|+|+. +.+++-+.|....+..+.-
T Consensus 328 T~ltF~Pds-r~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 328 TGLTFSPDS-RYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eeEEEcCCc-CcccccccCCceeEEEEee
Confidence 999999998 9999999999999888764
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=6.1e-15 Score=134.30 Aligned_cols=279 Identities=9% Similarity=0.117 Sum_probs=169.4
Q ss_pred ccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEec-ccceEEEEEecCCcCCCCccccchhhhcccccccc
Q 014005 8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTST 86 (432)
Q Consensus 8 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (432)
+.....|++.. -++-...+.+.+.+....+.++|++++|++++ .++.|.+|+++....+
T Consensus 11 ~~~I~~~~~~~-~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l------------------- 70 (330)
T PRK11028 11 SQQIHVWNLNH-EGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL------------------- 70 (330)
T ss_pred CCCEEEEEECC-CCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-------------------
Confidence 34455666631 12222334445556778899999999886654 5788999999732111
Q ss_pred ccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeC-CCeEEEEEccC-ccee-eeeecCCCCcccc
Q 014005 87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRD-QKVK-KIKEMDHFPFVSS 163 (432)
Q Consensus 87 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~-~~~~-~~~~~~~~~~~~~ 163 (432)
....... .. .....+.+ +|+++++++++. ++.|.+|++.. +... .......
T Consensus 71 -----~~~~~~~-~~------------~~p~~i~~--~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~------ 124 (330)
T PRK11028 71 -----TFAAESP-LP------------GSPTHIST--DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG------ 124 (330)
T ss_pred -----EEeeeec-CC------------CCceEEEE--CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC------
Confidence 0111111 11 34567889 899998888764 88999999964 2221 1111111
Q ss_pred ccccccccccccccCCCCCcceecceeeccceEEEEeeccccccee--eEEeecCCCCCeeEEEeCCCCCEEEEE--cCC
Q 014005 164 ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARC--QKVYPHAHDFNINSISNNSDCETFVSA--DDL 239 (432)
Q Consensus 164 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~ 239 (432)
......++++|++++++.... .++.|.+||+........ ..............++|+|++++++++ .++
T Consensus 125 ------~~~~~~~~~~p~g~~l~v~~~-~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~ 197 (330)
T PRK11028 125 ------LEGCHSANIDPDNRTLWVPCL-KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNS 197 (330)
T ss_pred ------CCcccEeEeCCCCCEEEEeeC-CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCC
Confidence 123456788999988866543 268999999974211110 001101123456789999999999877 499
Q ss_pred eEEEEeCCCCC-c--eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccceeeccccc
Q 014005 240 RINLWNLEISD-Q--CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAE 315 (432)
Q Consensus 240 ~i~lwd~~~~~-~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~ 315 (432)
+|.+|+++... . ....+..-+.... +......+.++|++ ++++++. .++.|.+|++...... ..+.+|..
T Consensus 198 ~v~v~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~~~----~~~~~~~~ 271 (330)
T PRK11028 198 SVDVWQLKDPHGEIECVQTLDMMPADFS-DTRWAADIHITPDG-RHLYACDRTASLISVFSVSEDGSV----LSFEGHQP 271 (330)
T ss_pred EEEEEEEeCCCCCEEEEEEEecCCCcCC-CCccceeEEECCCC-CEEEEecCCCCeEEEEEEeCCCCe----EEEeEEEe
Confidence 99999997321 1 2222211111111 12234578999999 8777775 4789999999654321 22222100
Q ss_pred ccCCccceeeeecceeEEEEcCCCCEEEEee--CCeEEEEec
Q 014005 316 SHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKVFRY 355 (432)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~--~~~i~iwd~ 355 (432)
-......+.|+|||++|+++. +++|.+|++
T Consensus 272 ----------~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 272 ----------TETQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred ----------ccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 012456789999999999753 499999988
No 184
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3.8e-15 Score=139.75 Aligned_cols=265 Identities=12% Similarity=0.185 Sum_probs=167.2
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
...|.-.++|.++||+++++|+|..||.|.+|.--..+. ...-.+.+.-|.
T Consensus 201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-----------------------~~~t~t~lHWH~------ 251 (792)
T KOG1963|consen 201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-----------------------DSETCTLLHWHH------ 251 (792)
T ss_pred hhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-----------------------ccccceEEEecc------
Confidence 356666799999999999999999999999997433110 011235677888
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
..|.+++| +++|.+|++|+..+.+.+|.+.+++.+.+..+. +.|..+.++|++.....
T Consensus 252 ------~~V~~L~f--S~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLg--------------s~I~~i~vS~ds~~~sl 309 (792)
T KOG1963|consen 252 ------DEVNSLSF--SSDGAYLLSGGREGVLVLWQLETGKKQFLPRLG--------------SPILHIVVSPDSDLYSL 309 (792)
T ss_pred ------cccceeEE--ecCCceEeecccceEEEEEeecCCCcccccccC--------------CeeEEEEEcCCCCeEEE
Confidence 89999999 899999999999999999999998855555543 78899999999988877
Q ss_pred ceeeccceEEEEeecccccceeeEEe-------ecCCCCCeeEEEeCCCCCEEEE-EcCCeEEEEeC-------------
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVY-------PHAHDFNINSISNNSDCETFVS-ADDLRINLWNL------------- 246 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~-~~d~~i~lwd~------------- 246 (432)
... |+.+.+-..........+..+ +....+-.+.++++|.-+.++. |..|.|.+||+
T Consensus 310 ~~~--DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~ 387 (792)
T KOG1963|consen 310 VLE--DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCD 387 (792)
T ss_pred Eec--CceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEe
Confidence 776 777777665321111111111 0111222333444442222222 24444444443
Q ss_pred --------------------------------------------------CCCCceeeEeecCCCCcCCCCcceEEEEEc
Q 014005 247 --------------------------------------------------EISDQCFNIVDMKPSNMDDLTEVITSAEFH 276 (432)
Q Consensus 247 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (432)
. ....-.++ .......|...+...++.
T Consensus 388 ~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n-~~~kt~~L--~T~I~~PH~~~~vat~~~ 464 (792)
T KOG1963|consen 388 ENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN-PNSKTFIL--NTKINNPHGNAFVATIFL 464 (792)
T ss_pred ecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc-CCcceeEE--EEEEecCCCceeEEEEEe
Confidence 3 11100000 111124566655555554
Q ss_pred -CCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 277 -PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 277 -p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
|.....+++++.||.+++|-+...+...+.-..+..|.. ..| |..+++.++|+.||..|+.+-+++|.+||.
T Consensus 465 ~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i-----~sy--~k~~i~a~~fs~dGslla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 465 NPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI-----GSY--HKTPITALCFSQDGSLLAVSFDDTITIWDY 537 (792)
T ss_pred cCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee-----ecc--ccCcccchhhcCCCcEEEEecCCEEEEecC
Confidence 333238999999999999988543321110111111100 001 367899999999999999998899999999
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=6.8e-14 Score=127.41 Aligned_cols=213 Identities=12% Similarity=0.108 Sum_probs=134.8
Q ss_pred cceeEEEEEEcCCCCEEEEEe-CCCeEEEEEcc-CcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 114 EKINRVRWCAAPNGSMFILST-NDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
.....+++ +|++++|++++ .++.|.+|++. .+.+........ . +....++++|++++++.+...
T Consensus 35 ~~~~~l~~--spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~-----------~~p~~i~~~~~g~~l~v~~~~ 100 (330)
T PRK11028 35 GQVQPMVI--SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-P-----------GSPTHISTDHQGRFLFSASYN 100 (330)
T ss_pred CCCccEEE--CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC-C-----------CCceEEEECCCCCEEEEEEcC
Confidence 45667889 89999887764 57889999996 344333222211 1 345678999999988887643
Q ss_pred ccceEEEEeecccc-cceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 192 ENMATKIANVGNSV-HARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 192 ~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
++.+.+|+++... .......+ .+......++++|++++++++ .++.|.+||++..+...... ....... ...
T Consensus 101 -~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-~~~~~~~-~g~ 175 (330)
T PRK11028 101 -ANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-PAEVTTV-EGA 175 (330)
T ss_pred -CCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-CCceecC-CCC
Confidence 7899999986321 11223322 233456788999999988765 78999999998423221100 0000011 123
Q ss_pred ceEEEEEcCCCCcEEEEEeC-CCeEEEEEccc--cccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005 269 VITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~-dg~i~iwd~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~ 345 (432)
..+.+.|+|++ ++++++.. ++.|.+||+.. ++. +....+..++.... .......+.++|||++|+++
T Consensus 176 ~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~--~~~~~~~~~p~~~~-------~~~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 176 GPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEI--ECVQTLDMMPADFS-------DTRWAADIHITPDGRHLYAC 245 (330)
T ss_pred CCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCE--EEEEEEecCCCcCC-------CCccceeEEECCCCCEEEEe
Confidence 46789999999 88877765 89999999974 221 11222222111000 01234468999999999886
Q ss_pred e--CCeEEEEec
Q 014005 346 D--YMNLKVFRY 355 (432)
Q Consensus 346 ~--~~~i~iwd~ 355 (432)
. ++.|.+|++
T Consensus 246 ~~~~~~I~v~~i 257 (330)
T PRK11028 246 DRTASLISVFSV 257 (330)
T ss_pred cCCCCeEEEEEE
Confidence 3 389999998
No 186
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=4.3e-15 Score=122.17 Aligned_cols=208 Identities=15% Similarity=0.204 Sum_probs=145.8
Q ss_pred cceeEEEEEEcCCC---CEEEEEeCCCeEEEEEccC--cceee--eeecCCCCccccccccccccccccccCCCC-Ccce
Q 014005 114 EKINRVRWCAAPNG---SMFILSTNDKTIKLWKVRD--QKVKK--IKEMDHFPFVSSENTLLAEKNFMNEHNPPS-FAHG 185 (432)
Q Consensus 114 ~~v~~l~~~~s~~~---~~l~s~~~d~~i~iwd~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~ 185 (432)
.+++.+.|.|++.| ++||+++ ..+++|.+.. .+... ....+...+. ..++++..|+.- ..++
T Consensus 97 YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~--------~aPlTSFDWne~dp~~i 166 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEF--------CAPLTSFDWNEVDPNLI 166 (364)
T ss_pred CCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCccccc--------CCcccccccccCCccee
Confidence 89999999665443 3465554 4799999974 33221 1111112222 267788888654 4566
Q ss_pred ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (432)
Q Consensus 186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (432)
.+.+. |.+..|||++.+..+.....+ -+|+..|..++|...+. .+|+. .||.+++||++.-....-+++ .
T Consensus 167 gtSSi--DTTCTiWdie~~~~~~vkTQL-IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE-~---- 238 (364)
T KOG0290|consen 167 GTSSI--DTTCTIWDIETGVSGTVKTQL-IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE-D---- 238 (364)
T ss_pred Eeecc--cCeEEEEEEeeccccceeeEE-EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec-C----
Confidence 66666 999999999954333344445 68999999999998655 45555 999999999993333322331 1
Q ss_pred CCCCcceEEEEEcCCCCcEEEEEeCC-CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC-CCE
Q 014005 264 DDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQH 341 (432)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d-g~~ 341 (432)
.....+...++|++..++++|+-..| ..|.|.|+|.-... +..+++| .+.|++++|.|. +..
T Consensus 239 p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp---va~L~~H-------------~a~VNgIaWaPhS~~h 302 (364)
T KOG0290|consen 239 PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP---VARLRNH-------------QASVNGIAWAPHSSSH 302 (364)
T ss_pred CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc---eehhhcC-------------cccccceEecCCCCce
Confidence 11245788999999888899886655 47999999964432 6888887 899999999997 457
Q ss_pred EEEe-eCCeEEEEec
Q 014005 342 LLSR-DYMNLKVFRY 355 (432)
Q Consensus 342 l~s~-~~~~i~iwd~ 355 (432)
|+++ +|..+-+||+
T Consensus 303 ictaGDD~qaliWDl 317 (364)
T KOG0290|consen 303 ICTAGDDCQALIWDL 317 (364)
T ss_pred eeecCCcceEEEEec
Confidence 7775 5599999999
No 187
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=6.5e-16 Score=137.36 Aligned_cols=237 Identities=22% Similarity=0.295 Sum_probs=160.0
Q ss_pred CCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005 24 NPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (432)
Q Consensus 24 ~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~ 103 (432)
.+.++.+|++.|+|++|+.+|.+|++|+.|-.+.|||.-..+.+ ...-.||.
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll--------------------------hsI~TgHt-- 93 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL--------------------------HSISTGHT-- 93 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhccee--------------------------eeeecccc--
Confidence 34567789999999999999999999999999999998765432 12345898
Q ss_pred ccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (432)
Q Consensus 104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 183 (432)
..|.++.|.|..+.+.+++|..|..|+++|+...+-.. ..
T Consensus 94 ----------aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~---~d--------------------------- 133 (758)
T KOG1310|consen 94 ----------ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGG---MD--------------------------- 133 (758)
T ss_pred ----------cceeEEeeeccCCCeEEEeccCcceEEEEecccccccc---cc---------------------------
Confidence 99999999998888899999999999999997543110 00
Q ss_pred ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCCCCCceeeEeecCC-
Q 014005 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKP- 260 (432)
Q Consensus 184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~- 260 (432)
+| .....+.+ ..|...|..++..|++ ..+.++ .||+++-+|++-...|-...+...
T Consensus 134 ---------~~-----------~~~~~~~~-~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~ 192 (758)
T KOG1310|consen 134 ---------HG-----------MEETTRCW-SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI 192 (758)
T ss_pred ---------cC-----------ccchhhhh-hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH
Confidence 00 00111222 5788899999999998 566777 999999999983222211100000
Q ss_pred -CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc---ccc------------ccCCc----
Q 014005 261 -SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD---AAE------------SHGSK---- 320 (432)
Q Consensus 261 -~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---h~~------------~~~~~---- 320 (432)
......--...++..+|..+.+||+|+.|--.++||.|... +.+.. |.. .|...
T Consensus 193 l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~l------ks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~ 266 (758)
T KOG1310|consen 193 LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVL------KSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQ 266 (758)
T ss_pred HHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhc------cCCCCCccccCCCCcccchhheecCccccCcc
Confidence 01111123467899999998999999999999999965321 11111 000 01110
Q ss_pred cceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005 321 SFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 321 ~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
....-....++-++|+|+|.-|+.. +...|+++|+
T Consensus 267 gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdv 302 (758)
T KOG1310|consen 267 GNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDV 302 (758)
T ss_pred cccccceeeeEEEEECCCCcEEEEeeCCeEEEEEee
Confidence 0010011236778999999766553 4479999999
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.70 E-value=1.7e-15 Score=129.91 Aligned_cols=258 Identities=15% Similarity=0.216 Sum_probs=163.7
Q ss_pred chhhccccchhhhhhhhcCCC------CCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhh
Q 014005 4 NREEASASLEWKCSQAFGERN------PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSEL 77 (432)
Q Consensus 4 ~~~~~~~~~~w~~~~~~~~~~------~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 77 (432)
.++.+...+.|+......+.. ...+-+|..+|+++.|+|+|+.||+|+.+|.|.+|....-... ....+.
T Consensus 31 T~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~----~~d~e~ 106 (434)
T KOG1009|consen 31 TAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF----DADTEA 106 (434)
T ss_pred cccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc----cccchh
Confidence 346677888998886544332 1223478999999999999999999999999999997742111 000010
Q ss_pred hccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCC
Q 014005 78 EKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH 157 (432)
Q Consensus 78 ~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 157 (432)
+ ...+.+.....+.+|. +.|+.++| +|++.++++++.|+.+++||+..|++... ...
T Consensus 107 ~-------~~ke~w~v~k~lr~h~------------~diydL~W--s~d~~~l~s~s~dns~~l~Dv~~G~l~~~--~~d 163 (434)
T KOG1009|consen 107 D-------LNKEKWVVKKVLRGHR------------DDIYDLAW--SPDSNFLVSGSVDNSVRLWDVHAGQLLAI--LDD 163 (434)
T ss_pred h-------hCccceEEEEEecccc------------cchhhhhc--cCCCceeeeeeccceEEEEEeccceeEee--ccc
Confidence 0 1122456667888898 99999999 89999999999999999999999985544 333
Q ss_pred CCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccc------------------eeeEEee-cCCC
Q 014005 158 FPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA------------------RCQKVYP-HAHD 218 (432)
Q Consensus 158 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~------------------~~~~~~~-~~~~ 218 (432)
|. ..+..++|.|-.+++.+-+. |...+.+.+...... ...+.+. ....
T Consensus 164 h~-----------~yvqgvawDpl~qyv~s~s~--dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlk 230 (434)
T KOG1009|consen 164 HE-----------HYVQGVAWDPLNQYVASKSS--DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLK 230 (434)
T ss_pred cc-----------cccceeecchhhhhhhhhcc--CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchh
Confidence 43 56788888888888877766 443333333211111 1111110 0011
Q ss_pred CCeeEEEeCCCCCEEEEE-c----CCe-----EEEEeCCCCCceee-----------------EeecCCCC---------
Q 014005 219 FNINSISNNSDCETFVSA-D----DLR-----INLWNLEISDQCFN-----------------IVDMKPSN--------- 262 (432)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~-~----d~~-----i~lwd~~~~~~~~~-----------------~~~~~~~~--------- 262 (432)
.....++|+|+|..+++. . ++. .++++-....++.. .++++|..
T Consensus 231 sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lp 310 (434)
T KOG1009|consen 231 SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLP 310 (434)
T ss_pred hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccc
Confidence 234456777888766653 1 222 23333211000000 00111110
Q ss_pred ---------------------------cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 263 ---------------------------MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 263 ---------------------------~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
-.-|-..|+.++|+++| ..|+..+.||...+.-+...++
T Consensus 311 yrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg-~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 311 YRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDG-SVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCC-cEEEEeccCCceEEEEEcchhc
Confidence 12356789999999999 9999999999988888776554
No 189
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.69 E-value=1.8e-14 Score=139.62 Aligned_cols=284 Identities=14% Similarity=0.110 Sum_probs=170.7
Q ss_pred cccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccc
Q 014005 9 SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTS 87 (432)
Q Consensus 9 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (432)
+..+-|+.....- .+...|+..|..++.++.. .++++||.||+|++|+...-... .
T Consensus 1029 ~p~~gW~p~G~lV----AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~-------------~------ 1085 (1431)
T KOG1240|consen 1029 SPPPGWNPRGILV----AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE-------------G------ 1085 (1431)
T ss_pred CCCCCCCccceEe----ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC-------------c------
Confidence 3344566664432 4455678888888887655 99999999999999998653311 0
Q ss_pred cCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeee-----eecCCCCccc
Q 014005 88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI-----KEMDHFPFVS 162 (432)
Q Consensus 88 ~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~ 162 (432)
..++...++.--. ..+.++..+ ++++.+|.++.||.|++.++......+. ...+.+
T Consensus 1086 -~s~rS~ltys~~~------------sr~~~vt~~--~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~---- 1146 (1431)
T KOG1240|consen 1086 -GSARSELTYSPEG------------SRVEKVTMC--GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLK---- 1146 (1431)
T ss_pred -ceeeeeEEEeccC------------CceEEEEec--cCCCeEEEEcCCCeEEEEEccccccccceeeeeeccccc----
Confidence 0122222333222 678888884 6789999999999999999976321111 111111
Q ss_pred cccccccccccccc-cCCCC--CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC
Q 014005 163 SENTLLAEKNFMNE-HNPPS--FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD 238 (432)
Q Consensus 163 ~~~~~~~~~~i~~~-~~~~~--~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d 238 (432)
..+.+.++ +|... ...++.+.. .+.+..||.+.......++. ....+.|++++.+|.+.+++.| ..
T Consensus 1147 ------~~g~vv~m~a~~~~~~S~~lvy~T~--~~~iv~~D~r~~~~~w~lk~--~~~hG~vTSi~idp~~~WlviGts~ 1216 (1431)
T KOG1240|consen 1147 ------KDGVVVSMHAFTAIVQSHVLVYATD--LSRIVSWDTRMRHDAWRLKN--QLRHGLVTSIVIDPWCNWLVIGTSR 1216 (1431)
T ss_pred ------CCCceEEeecccccccceeEEEEEe--ccceEEecchhhhhHHhhhc--CccccceeEEEecCCceEEEEecCC
Confidence 11333333 22222 124444444 78899999885433222222 2345789999999999999999 99
Q ss_pred CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCC--cEEEEE-e-CCCeEEEEEccccccccccceeecccc
Q 014005 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC--NLLAYS-S-SRGFVRLVDMRQSALCDHSARILRDAA 314 (432)
Q Consensus 239 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~-~-~dg~i~iwd~~~~~~~~~~~~~~~~h~ 314 (432)
|.+.+||++. +..+..+ . .++..+|+.+..+|..+ ...+++ + ..+.|.+|++.+|.. ...+-...
T Consensus 1217 G~l~lWDLRF-~~~i~sw-----~-~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~----~~vl~~s~ 1285 (1431)
T KOG1240|consen 1217 GQLVLWDLRF-RVPILSW-----E-HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR----QTVLWASD 1285 (1431)
T ss_pred ceEEEEEeec-Cceeecc-----c-CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc----eEEEEcCC
Confidence 9999999994 4455444 1 34457788888877553 344444 4 578899999998753 23333210
Q ss_pred c-------ccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 315 E-------SHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 315 ~-------~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
. .|...+.-+.....+.+.--.++|-.+.+|+|..|+.||.
T Consensus 1286 ~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1286 GAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred CCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 0 0111000011112233333333443444457799999999
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=3.9e-15 Score=139.80 Aligned_cols=201 Identities=12% Similarity=0.063 Sum_probs=133.8
Q ss_pred cceeEEEEEEcCCCCEEEEEeCC---CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
..+...+| +|||+.++.++.+ ..|.+||+.+++...+.... +....++|+|++..++.+..
T Consensus 204 ~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~--------------g~~~~~~wSPDG~~La~~~~ 267 (429)
T PRK01742 204 QPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR--------------GHNGAPAFSPDGSRLAFASS 267 (429)
T ss_pred CccccceE--cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC--------------CccCceeECCCCCEEEEEEe
Confidence 78899999 8999999887654 47999999887755544332 23346899999998877542
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
.++...||.++.. .+.. ..+ ..+...+.+..|+|||+.++.+ .++...+|+++..+.....+ .+..
T Consensus 268 -~~g~~~Iy~~d~~-~~~~-~~l-t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--------~~~~ 335 (429)
T PRK01742 268 -KDGVLNIYVMGAN-GGTP-SQL-TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--------GGRG 335 (429)
T ss_pred -cCCcEEEEEEECC-CCCe-Eee-ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--------cCCC
Confidence 1565555544321 2333 333 4566678899999999987754 67888888876333333322 2222
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-C
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~ 347 (432)
....|+|+| +.|+.++.++ +.+||+.+++. ..+..+ .....+.|+|||++|+.++ +
T Consensus 336 --~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~-----~~lt~~--------------~~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 336 --YSAQISADG-KTLVMINGDN-VVKQDLTSGST-----EVLSST--------------FLDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred --CCccCCCCC-CEEEEEcCCC-EEEEECCCCCe-----EEecCC--------------CCCCCceECCCCCEEEEEEcC
Confidence 347899999 8888877765 55699988764 333221 1234678999999999864 4
Q ss_pred CeEEEEec-----CcceeEeecc
Q 014005 348 MNLKVFRY-----EPVMTLSFCG 365 (432)
Q Consensus 348 ~~i~iwd~-----~~~~~~~~~~ 365 (432)
+...+|++ +..+.+..+.
T Consensus 393 g~~~~l~~~~~~G~~~~~l~~~~ 415 (429)
T PRK01742 393 GLGKVLQLVSADGRFKARLPGSD 415 (429)
T ss_pred CCceEEEEEECCCCceEEccCCC
Confidence 77777765 4555555444
No 191
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=1.4e-16 Score=138.87 Aligned_cols=229 Identities=14% Similarity=0.135 Sum_probs=181.8
Q ss_pred EEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhc
Q 014005 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (432)
Q Consensus 35 V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (432)
-..+.|+.+|.+|+.|+.-|.+-.+|..++++. ..+.-. .
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~---------------------------~Ei~v~-------------E 171 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH---------------------------FEINVM-------------E 171 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceee---------------------------eeeehh-------------h
Confidence 467899999999999999999999999988743 222221 6
Q ss_pred ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc
Q 014005 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (432)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 194 (432)
.|.++.|+ .+.++||++- .+.+.|||-.+-++.++..+ ..+..+.|-|-.-++++++. .|
T Consensus 172 tv~Dv~~L--Hneq~~AVAQ-K~y~yvYD~~GtElHClk~~---------------~~v~rLeFLPyHfLL~~~~~--~G 231 (545)
T KOG1272|consen 172 TVRDVTFL--HNEQFFAVAQ-KKYVYVYDNNGTELHCLKRH---------------IRVARLEFLPYHFLLVAASE--AG 231 (545)
T ss_pred hhhhhhhh--cchHHHHhhh-hceEEEecCCCcEEeehhhc---------------Cchhhhcccchhheeeeccc--CC
Confidence 78999994 5666777775 57899999887776666555 57888999999888888888 89
Q ss_pred eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEE
Q 014005 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (432)
Q Consensus 195 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 273 (432)
.++--|+. .++.+..+ ....+.+..++-+|-+..+-+| .+|+|.+|... ...++.. +..|.++|.++
T Consensus 232 ~L~Y~DVS---~GklVa~~-~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~-skePLvK-------iLcH~g~V~si 299 (545)
T KOG1272|consen 232 FLKYQDVS---TGKLVASI-RTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN-SKEPLVK-------ILCHRGPVSSI 299 (545)
T ss_pred ceEEEeec---hhhhhHHH-HccCCccchhhcCCccceEEEcCCCceEEecCCC-CcchHHH-------HHhcCCCcceE
Confidence 99999998 77777776 5667788899999999899999 99999999998 4444432 37999999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEE
Q 014005 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVF 353 (432)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iw 353 (432)
+++++| +++||++.|..++|||+|.-.. +.++.. ..+...+++|..| +||.+-...+.||
T Consensus 300 Av~~~G-~YMaTtG~Dr~~kIWDlR~~~q----l~t~~t--------------p~~a~~ls~Sqkg-lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 300 AVDRGG-RYMATTGLDRKVKIWDLRNFYQ----LHTYRT--------------PHPASNLSLSQKG-LLALSYGDHVQIW 359 (545)
T ss_pred EECCCC-cEEeecccccceeEeeeccccc----cceeec--------------CCCcccccccccc-ceeeecCCeeeee
Confidence 999999 9999999999999999997543 233333 2467789999877 4555433688999
Q ss_pred ec
Q 014005 354 RY 355 (432)
Q Consensus 354 d~ 355 (432)
.=
T Consensus 360 ~d 361 (545)
T KOG1272|consen 360 KD 361 (545)
T ss_pred hh
Confidence 65
No 192
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.68 E-value=5.7e-14 Score=132.49 Aligned_cols=246 Identities=21% Similarity=0.344 Sum_probs=185.0
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
...|.+.|.++.|.+.+..++.++.|+.+.+|+...... ....+.++..
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------------~~~~~~~~~~----- 109 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK--------------------------LIKSLEGLHD----- 109 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce--------------------------eEEEEeccCC-----
Confidence 457889999999999999999999999999999887630 1234444330
Q ss_pred chhhhhcceeEEEEEEcCCCC-EEEEEeC-CCeEEEEEccC-cceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005 108 KSLEIEEKINRVRWCAAPNGS-MFILSTN-DKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~-~l~s~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
..+..+.+. ++++. .++..+. |+.+.+|+... .. .......+. ..+..+.|++++..
T Consensus 110 ------~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~-----------~~v~~~~~~~~~~~ 169 (466)
T COG2319 110 ------SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGK--LIRTLEGHS-----------ESVTSLAFSPDGKL 169 (466)
T ss_pred ------CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCe--EEEEEecCc-----------ccEEEEEECCCCCE
Confidence 256677775 56776 4555444 99999999987 33 222222233 67778999999987
Q ss_pred eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceee-EeecCCC
Q 014005 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFN-IVDMKPS 261 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~-~~~~~~~ 261 (432)
++.+.. .++.+++|+.. .......+ .+|...+.+++|+|++. .++++ .|+.+++||.. .+.... .+
T Consensus 170 ~~~~~~-~~~~~~~~~~~---~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~~~~~~~~~----- 238 (466)
T COG2319 170 LASGSS-LDGTIKLWDLR---TGKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRSTL----- 238 (466)
T ss_pred EEecCC-CCCceEEEEcC---CCceEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-CCcEEeeec-----
Confidence 766653 48999999998 56677777 67999999999999998 66665 89999999888 555554 33
Q ss_pred CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (432)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 341 (432)
.+|.... ...|+|++ ..+++++.|+.+++||++..... ...+..| ...+.++.|+|++..
T Consensus 239 --~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~-------------~~~v~~~~~~~~~~~ 298 (466)
T COG2319 239 --SGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSL---LRTLSGH-------------SSSVLSVAFSPDGKL 298 (466)
T ss_pred --CCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcE---EEEEecC-------------CccEEEEEECCCCCE
Confidence 6776664 33899998 89999999999999999865531 2333444 678999999998888
Q ss_pred EEEe-eCCeEEEEec
Q 014005 342 LLSR-DYMNLKVFRY 355 (432)
Q Consensus 342 l~s~-~~~~i~iwd~ 355 (432)
++++ .++.+.+||.
T Consensus 299 ~~~~~~d~~~~~~~~ 313 (466)
T COG2319 299 LASGSSDGTVRLWDL 313 (466)
T ss_pred EEEeeCCCcEEEEEc
Confidence 8886 4488999988
No 193
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=1.8e-14 Score=134.67 Aligned_cols=252 Identities=9% Similarity=0.039 Sum_probs=164.1
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc--eecceee
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH--GYHLEWT 191 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~ 191 (432)
..|.++.|+| .+..+++.|+.+|.|.+||+..+......... ........++..+.|..+... +++++.
T Consensus 243 s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls-------~~~~sh~~~v~~vvW~~~~~~~~f~s~ss- 313 (555)
T KOG1587|consen 243 SEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS-------ALEVSHSEPVTAVVWLQNEHNTEFFSLSS- 313 (555)
T ss_pred CceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCCcccc-------cccccCCcCeEEEEEeccCCCCceEEEec-
Confidence 6899999975 46678899999999999999877642211111 111223367777777655444 677776
Q ss_pred ccceEEEEeecccccce---eeEEee-----cCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCcee-eEeecCC
Q 014005 192 ENMATKIANVGNSVHAR---CQKVYP-----HAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCF-NIVDMKP 260 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~---~~~~~~-----~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~-~~~~~~~ 260 (432)
||.|..|+++...... +..... ......++++.|.+. -..+++| ++|.|.--+........ ..+ ++
T Consensus 314 -DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~--~~ 390 (555)
T KOG1587|consen 314 -DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSY--KG 390 (555)
T ss_pred -CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccc--cc
Confidence 9999999887532111 111110 122346888999885 4567788 99988763332111111 111 11
Q ss_pred C-CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc-ccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005 261 S-NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (432)
Q Consensus 261 ~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d 338 (432)
. ....|.+.|+++.++|-+...|++++ |-+++||... .... +..+..+ ...+++++|||.
T Consensus 391 ~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~P----l~~~~~~-------------~~~v~~vaWSpt 452 (555)
T KOG1587|consen 391 HSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASP----LLSLDSS-------------PDYVTDVAWSPT 452 (555)
T ss_pred cccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCc----chhhhhc-------------cceeeeeEEcCc
Confidence 1 34678899999999999866666666 9999999977 3332 4555553 566999999998
Q ss_pred CCE-EEEee-CCeEEEEec-----CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005 339 GQH-LLSRD-YMNLKVFRY-----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG 406 (432)
Q Consensus 339 g~~-l~s~~-~~~i~iwd~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 406 (432)
..- +++++ +|.+.+||+ .|+.+.+.... .++......+.-.++.|.+.|++.+|+..
T Consensus 453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~-----------~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSP-----------ALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred CceEEEEEcCCCceehhhhhccccCCccccccccc-----------ccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 654 45565 499999999 56666555422 22333333445569999999999999954
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=2.4e-15 Score=133.49 Aligned_cols=251 Identities=17% Similarity=0.212 Sum_probs=163.1
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCC--CCccccc---------hhhhcccccc----------cccc
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNT--PNQHISR---------SELEKQMDFT----------STSH 88 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~~---------~~~~~~~~~~----------~~~~ 88 (432)
.|+..|.|+.|+.+...+.+++.+..+.-|++.+.... ..+.... ..-.+.+... ...+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 67778889999998887777665555555555443211 0000000 0000000000 0111
Q ss_pred CCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccc
Q 014005 89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (432)
Q Consensus 89 p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (432)
.+.+.-....+|. +.+.+-.| +|||.-|++++.||.|++|.-. |.+.....-+
T Consensus 92 k~~rVE~sv~AH~------------~A~~~gRW--~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~------------ 144 (737)
T KOG1524|consen 92 KSARVERSISAHA------------AAISSGRW--SPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQN------------ 144 (737)
T ss_pred ccchhhhhhhhhh------------hhhhhccc--CCCCceeeeecCCceEEEEecc-chHHHHHhhc------------
Confidence 1223333445555 88999999 8999999999999999999854 3322211111
Q ss_pred cccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCC
Q 014005 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 247 (432)
Q Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~ 247 (432)
..+|++++|.|+...++-+. .+.+.|-.+.. ..++++ . ..|++-|.++.|++..+.+++| .|-..++||-.
T Consensus 145 -~~~v~c~~W~p~S~~vl~c~---g~h~~IKpL~~--n~k~i~-W-kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 145 -EESIRCARWAPNSNSIVFCQ---GGHISIKPLAA--NSKIIR-W-RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred -CceeEEEEECCCCCceEEec---CCeEEEeeccc--ccceeE-E-eccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence 26799999999977665544 45666655552 233333 3 6899999999999999999999 99999999998
Q ss_pred CCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeee
Q 014005 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (432)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 327 (432)
+..+-. ...|..+|++++|+|+ ..++.++.+ +.++ .+ .. .
T Consensus 217 --G~~Lf~-------S~~~ey~ITSva~npd--~~~~v~S~n-t~R~---~~----------p~---------------~ 256 (737)
T KOG1524|consen 217 --GANLFT-------SAAEEYAITSVAFNPE--KDYLLWSYN-TARF---SS----------PR---------------V 256 (737)
T ss_pred --Cccccc-------CChhccceeeeeeccc--cceeeeeee-eeee---cC----------CC---------------c
Confidence 444432 2678889999999998 456666543 3331 11 11 4
Q ss_pred cceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 328 ASISDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 328 ~~v~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
++|..++||+||..+++|.. |.+.+=-+
T Consensus 257 GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 257 GSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred cceEEEEEcCCCceeeccccCceEEEeee
Confidence 78999999999999999855 76655433
No 195
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=3.4e-14 Score=127.27 Aligned_cols=248 Identities=16% Similarity=0.223 Sum_probs=174.4
Q ss_pred CccccCCCcEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005 26 DEELQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (432)
Q Consensus 26 ~~~~~h~~~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~ 104 (432)
...+.++..-+.|..+|||+|+ |+|..--.|++||+.+-.+ .|.-|.
T Consensus 45 iQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-----------------------------KFERhl--- 92 (703)
T KOG2321|consen 45 IQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-----------------------------KFERHL--- 92 (703)
T ss_pred HHhcCCccccceeEecCCCcEEEEecccCCceEEEEccccee-----------------------------eeeecc---
Confidence 3456778889999999999985 7788888999999987542 344454
Q ss_pred cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
| ..+..+..+ +.|-..++.-..|++|.+....+.. ..+. +. ..-+++.++.-..-
T Consensus 93 D--------ae~V~feiL-sDD~SK~v~L~~DR~IefHak~G~h-y~~R-IP--------------~~GRDm~y~~~scD 147 (703)
T KOG2321|consen 93 D--------AEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKYGRH-YRTR-IP--------------KFGRDMKYHKPSCD 147 (703)
T ss_pred c--------ccceeEEEe-ccchhhheEeecCceeeehhhcCee-eeee-cC--------------cCCccccccCCCcc
Confidence 1 344444443 5565566666778888876543221 1110 00 23345666555544
Q ss_pred eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (432)
++.++. ...|.-.+++ .++-+..| ....+.++++..++-..+|++| .+|.|..||.+ ......+++.... .
T Consensus 148 ly~~gs--g~evYRlNLE---qGrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR-~ksrv~~l~~~~~-v 219 (703)
T KOG2321|consen 148 LYLVGS--GSEVYRLNLE---QGRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR-DKSRVGTLDAASS-V 219 (703)
T ss_pred EEEeec--CcceEEEEcc---cccccccc-ccccccceeeeecCccceEEecccCceEEEecch-hhhhheeeecccc-c
Confidence 555444 4566666777 66777777 5666899999999999999999 89999999999 5555555543322 2
Q ss_pred CCCCc-----ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005 264 DDLTE-----VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (432)
Q Consensus 264 ~~~~~-----~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d 338 (432)
..|.+ .|+++.|+.+| -.+++|..+|.|.|||+|..++ .....|. ..-+|..+.|.+.
T Consensus 220 ~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~p-----l~~kdh~-----------~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 220 NSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKP-----LLVKDHG-----------YELPIKKLDWQDT 282 (703)
T ss_pred CCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCc-----eeecccC-----------Cccceeeeccccc
Confidence 33333 49999999998 9999999999999999998775 3344441 1458899999776
Q ss_pred --CCEEEEeeCCeEEEEec
Q 014005 339 --GQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 339 --g~~l~s~~~~~i~iwd~ 355 (432)
+..++|.+...++|||-
T Consensus 283 ~~q~~v~S~Dk~~~kiWd~ 301 (703)
T KOG2321|consen 283 DQQNKVVSMDKRILKIWDE 301 (703)
T ss_pred CCCceEEecchHHhhhccc
Confidence 56788888799999999
No 196
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=6e-15 Score=126.12 Aligned_cols=250 Identities=14% Similarity=0.084 Sum_probs=171.4
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcce----eeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV----KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
+.|++|.| +.++++|++|+.|..+++|.+..-.. +.+.... +...+.|.+++|+....++++|.
T Consensus 57 GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~----------~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 57 GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME----------HPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred cccceeee--ccCCeEEeecCCcceeeeechHHHHhhcCCCCceecc----------CccccceEEEEEccCCeeEecCC
Confidence 99999999 88899999999999999999864321 2221111 11237899999999999999999
Q ss_pred eeccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 190 WTENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
. +++|.+.|++ +.+.+.++. ....+.|+.+..+|..+.|++. .++.|.+||.+........+ -.....
T Consensus 125 ~--~~~VI~HDiE---t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-----~~AN~~ 194 (609)
T KOG4227|consen 125 R--WGTVIKHDIE---TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-----LPANSG 194 (609)
T ss_pred C--cceeEeeecc---cceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee-----eecCCC
Confidence 9 9999999998 666666651 2234589999999999999988 99999999998322233322 113344
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-e
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D 346 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~ 346 (432)
....++.|+|..+.+|++++..+-+.+||++..... +....+. .. ++.-.....++.|+|+|..+.+- -
T Consensus 195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~---~~~~~~~--~~-----L~~~~~~~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP---VYQRSMF--KG-----LPQENTEWMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred ccceeeeecCCCceeEEeccccCCCCceeeccccch---HHhhhcc--cc-----CcccchhhhheeeCCCCCeehhhhc
Confidence 567889999999899999999999999999865431 1111110 00 00001223578899999887774 3
Q ss_pred CCeEEEEec--CcceeEeecceeeeehhhhhcccccccc-cceeeE----EEEeecccceeeeec
Q 014005 347 YMNLKVFRY--EPVMTLSFCGIYVWILRQLQHSRFMSIY-ALSCVI----YIITTLYLINLSALS 404 (432)
Q Consensus 347 ~~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~g~~~~~i~~~~ 404 (432)
...-.+||+ ..+..++.... .+.+|... ..+|.| .|++|+.+=.|++|.
T Consensus 265 ~~~P~~~D~~S~R~~V~k~D~N---------~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 265 GKCPLYFDFISQRCFVLKSDHN---------PNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWK 320 (609)
T ss_pred cCCCEEeeeecccceeEeccCC---------CCcceeeeeeeeeeeecceeeeccCcccceEEEe
Confidence 356667888 23334443321 11222211 112222 499999999999998
No 197
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.65 E-value=2.8e-14 Score=119.43 Aligned_cols=254 Identities=14% Similarity=0.185 Sum_probs=155.8
Q ss_pred EEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcce
Q 014005 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (432)
Q Consensus 37 ~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v 116 (432)
-.+|||+|+++|+++.- .+.|-|.++-+.. +.|. . -+.|
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~---------------------------qlf~-----------c--ldki 51 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH---------------------------QLFL-----------C--LDKI 51 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHH---------------------------HHHH-----------H--HHHh
Confidence 36799999999998765 7777777664322 1111 0 1678
Q ss_pred eEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee-cceeeccc
Q 014005 117 NRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY-HLEWTENM 194 (432)
Q Consensus 117 ~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~ 194 (432)
.-|.| ..|..+++.+ ..|+.|.+|++...+.... .+..+ .++..+.|+|+++.+. +..+ +-
T Consensus 52 ~yieW--~ads~~ilC~~yk~~~vqvwsl~Qpew~ck--Ideg~-----------agls~~~WSPdgrhiL~tseF--~l 114 (447)
T KOG4497|consen 52 VYIEW--KADSCHILCVAYKDPKVQVWSLVQPEWYCK--IDEGQ-----------AGLSSISWSPDGRHILLTSEF--DL 114 (447)
T ss_pred hheee--eccceeeeeeeeccceEEEEEeecceeEEE--eccCC-----------CcceeeeECCCcceEeeeecc--ee
Confidence 88999 6777766555 7788999999987764332 22222 6788999999996555 4455 77
Q ss_pred eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCe--EEE-----E------eCCC----------C
Q 014005 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INL-----W------NLEI----------S 249 (432)
Q Consensus 195 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~--i~l-----w------d~~~----------~ 249 (432)
.+.+|.+. +.++... ......+..++|+|+|++.+.. .|.. +.+ | ++++ .
T Consensus 115 riTVWSL~---t~~~~~~--~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd 189 (447)
T KOG4497|consen 115 RITVWSLN---TQKGYLL--PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD 189 (447)
T ss_pred EEEEEEec---cceeEEe--cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC
Confidence 99999998 4444333 2334456889999999987754 3321 000 1 1110 0
Q ss_pred CceeeEeecCCC-C--cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccce------------------
Q 014005 250 DQCFNIVDMKPS-N--MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR------------------ 308 (432)
Q Consensus 250 ~~~~~~~~~~~~-~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------ 308 (432)
+..+..++-... . .-...-.+..++|+|.+ ++|+.|+.|+.+|+.+--+.+...+...
T Consensus 190 g~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 190 GNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS 268 (447)
T ss_pred CcEEEEecchhhheeeeeeeccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc
Confidence 111221110000 0 01112358889999998 9999999999998876554332110000
Q ss_pred --------------eecccccccCCc------------------cceeeeecceeEEEEcCCCCEEEEeeC---CeEEEE
Q 014005 309 --------------ILRDAAESHGSK------------------SFFTEIIASISDIKFANDGQHLLSRDY---MNLKVF 353 (432)
Q Consensus 309 --------------~~~~h~~~~~~~------------------~~~~~~~~~v~~~~~s~dg~~l~s~~~---~~i~iw 353 (432)
.++.|+ .+... .-++.....+..++||+|..|+++.+| +.+.+|
T Consensus 269 ~~ql~~~cLsf~p~~~~a~~-~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~W 347 (447)
T KOG4497|consen 269 IVQLLHHCLSFTPTDLEAHI-WEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLW 347 (447)
T ss_pred hhhhcccccccCCCccccCc-cccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEE
Confidence 000110 00000 122233457788999999999999754 899999
Q ss_pred ec
Q 014005 354 RY 355 (432)
Q Consensus 354 d~ 355 (432)
|+
T Consensus 348 dl 349 (447)
T KOG4497|consen 348 DL 349 (447)
T ss_pred ec
Confidence 99
No 198
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=7e-14 Score=116.66 Aligned_cols=236 Identities=13% Similarity=0.156 Sum_probs=152.8
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
...+++|+.|...+++|..+| .|||+.+--+.. ...+-+...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~---------------------------~~r~~~~~G---------- 48 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKES---------------------------ASRQFIDGG---------- 48 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhh---------------------------hhhccccCc----------
Confidence 455699999999999887664 899998753321 011111100
Q ss_pred cceeEEEEEEcCCCCEE-EEEeCC------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 114 EKINRVRWCAAPNGSMF-ILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l-~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
-.+.-+-| -.+++ ++|+.+ ++|.|||=..........+. ..|.++.+.++.-.++
T Consensus 49 ~~~veMLf----R~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~--------------~~I~~V~l~r~riVvv 110 (346)
T KOG2111|consen 49 FKIVEMLF----RSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFN--------------SEIKAVKLRRDRIVVV 110 (346)
T ss_pred hhhhhHhh----hhceEEEecCCCCCCCCCceEEEEecccCcEEEEEEec--------------cceeeEEEcCCeEEEE
Confidence 01112222 12233 334333 57999994443322222222 5778888877654444
Q ss_pred cceeeccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCCCCCc-eeeEeecCCCC
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQ-CFNIVDMKPSN 262 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~-~-~d~~i~lwd~~~~~~-~~~~~~~~~~~ 262 (432)
. .+.+.+|....+. +.++.+. ........+++-..+...||. | .-|.|.+-|+..... .-.+
T Consensus 111 l-----~~~I~VytF~~n~--k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~------- 176 (346)
T KOG2111|consen 111 L-----ENKIYVYTFPDNP--KLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSI------- 176 (346)
T ss_pred e-----cCeEEEEEcCCCh--hheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceE-------
Confidence 4 6788999877432 2222221 222344555555545555554 4 789999999983332 1123
Q ss_pred cCCCCcceEEEEEcCCCCcEEEEEeCCCe-EEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (432)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 341 (432)
+..|.+.|.+++++.+| .++|++|..|+ |||||..+|.. ++.++.-. ....|.+++||||+.+
T Consensus 177 I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~----l~E~RRG~-----------d~A~iy~iaFSp~~s~ 240 (346)
T KOG2111|consen 177 INAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTL----LQELRRGV-----------DRADIYCIAFSPNSSW 240 (346)
T ss_pred EEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcE----eeeeecCC-----------chheEEEEEeCCCccE
Confidence 38999999999999999 99999999996 79999999987 45554301 1368999999999999
Q ss_pred EEEeeC-CeEEEEec
Q 014005 342 LLSRDY-MNLKVFRY 355 (432)
Q Consensus 342 l~s~~~-~~i~iwd~ 355 (432)
||.++| |++.||.+
T Consensus 241 LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSL 255 (346)
T ss_pred EEEEcCCCeEEEEEe
Confidence 999988 99999999
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.4e-14 Score=136.10 Aligned_cols=218 Identities=12% Similarity=0.146 Sum_probs=145.6
Q ss_pred ccCCCcEEEEEEcCCCCEEEEeccc---ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
..|...+.++.|||+|+.|+.++.+ ..|.+||+.+++.. .+..+.+|.
T Consensus 200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-------------------------~l~~~~g~~---- 250 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-------------------------VVASFRGHN---- 250 (429)
T ss_pred ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-------------------------EEecCCCcc----
Confidence 3567789999999999999987654 36999999876421 222333333
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEEe-CCCeEEEE--EccCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLW--KVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (432)
..++| +|||+.|+.++ .+|.+.|| |+.++....+.. +. ..+....|+|++
T Consensus 251 -----------~~~~w--SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~---~~-----------~~~~~~~wSpDG 303 (429)
T PRK01742 251 -----------GAPAF--SPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTS---GA-----------GNNTEPSWSPDG 303 (429)
T ss_pred -----------CceeE--CCCCCEEEEEEecCCcEEEEEEECCCCCeEeecc---CC-----------CCcCCEEECCCC
Confidence 46789 89999888764 67766655 555665444322 22 456788999999
Q ss_pred cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC
Q 014005 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (432)
Q Consensus 183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~ 261 (432)
..++..+. .++...+|+++.... ....+ .+.. ....|+|+|+.++.+ .+ .+.+||+. ++......
T Consensus 304 ~~i~f~s~-~~g~~~I~~~~~~~~--~~~~l--~~~~--~~~~~SpDG~~ia~~~~~-~i~~~Dl~-~g~~~~lt----- 369 (429)
T PRK01742 304 QSILFTSD-RSGSPQVYRMSASGG--GASLV--GGRG--YSAQISADGKTLVMINGD-NVVKQDLT-SGSTEVLS----- 369 (429)
T ss_pred CEEEEEEC-CCCCceEEEEECCCC--CeEEe--cCCC--CCccCCCCCCEEEEEcCC-CEEEEECC-CCCeEEec-----
Confidence 98765542 156788888763211 12222 2222 457899999999888 54 46669998 44432211
Q ss_pred CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc--ccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (432)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d 338 (432)
... ...++.|+|++ ++|++++.++.+.+|++. +|+. .+.+..| .+.+...+|+|-
T Consensus 370 --~~~--~~~~~~~sPdG-~~i~~~s~~g~~~~l~~~~~~G~~----~~~l~~~-------------~g~~~~p~wsp~ 426 (429)
T PRK01742 370 --STF--LDESPSISPNG-IMIIYSSTQGLGKVLQLVSADGRF----KARLPGS-------------DGQVKFPAWSPY 426 (429)
T ss_pred --CCC--CCCCceECCCC-CEEEEEEcCCCceEEEEEECCCCc----eEEccCC-------------CCCCCCcccCCC
Confidence 111 23467899999 999999999988888764 3443 4667665 567888999984
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.64 E-value=2.3e-14 Score=130.57 Aligned_cols=232 Identities=15% Similarity=0.173 Sum_probs=156.7
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc--ccccCCcceeee-----eecCC
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT--STSHPEYRYKTE-----FQSHE 101 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~-----~~~h~ 101 (432)
-.|.+.|+|++|+.+|+.+|+|+.|..|.+|+..-...++. .+...+ ++|.|-...+.+ |.--.
T Consensus 50 KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY---------SH~D~IQCMsFNP~~h~LasCsLsdFglWS 120 (1081)
T KOG1538|consen 50 KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY---------SHNDAIQCMSFNPITHQLASCSLSDFGLWS 120 (1081)
T ss_pred ccccceEEEEEEccCCceeccCCCceeEEEecccccceeee---------ccCCeeeEeecCchHHHhhhcchhhccccC
Confidence 36999999999999999999999999999998654332210 112222 445552111111 11111
Q ss_pred ccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC
Q 014005 102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (432)
Q Consensus 102 ~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 181 (432)
++...+........+.+.+| ..||++|+.|-.+|+|.+-+-....-..+....+. +++|.+++|+|.
T Consensus 121 ~~qK~V~K~kss~R~~~CsW--tnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~-----------Nspiwsi~~~p~ 187 (1081)
T KOG1538|consen 121 PEQKSVSKHKSSSRIICCSW--TNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGS-----------NSPIWSICWNPS 187 (1081)
T ss_pred hhhhhHHhhhhheeEEEeee--cCCCcEEEEeccCceEEeecCCCCcceEEeCCCCC-----------CCCceEEEecCC
Confidence 11111222222367889999 89999999999999999986543332223222222 488999999987
Q ss_pred Ccc-----eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeE
Q 014005 182 FAH-----GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI 255 (432)
Q Consensus 182 ~~~-----~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~ 255 (432)
... +..... +.++.++.+.. +.+..- ....-...|+.+.++|.+++.| .|+.+.+|..+ +-.+-+
T Consensus 188 sg~G~~di~aV~DW--~qTLSFy~LsG----~~Igk~-r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~--GvrLGT 258 (1081)
T KOG1538|consen 188 SGEGRNDILAVADW--GQTLSFYQLSG----KQIGKD-RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD--GVRLGT 258 (1081)
T ss_pred CCCCccceEEEEec--cceeEEEEecc----eeeccc-ccCCCCchhheeccCCcEEEEccCCCceEEEeec--CeEEee
Confidence 542 222223 55677777652 222211 3344567799999999999999 99999999877 555554
Q ss_pred eecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccc
Q 014005 256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (432)
Q Consensus 256 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 299 (432)
+ .....+|+.++..|++ +.++.|+.||+|..|++-.
T Consensus 259 v-------g~~D~WIWtV~~~PNs-Q~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 259 V-------GEQDSWIWTVQAKPNS-QYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred c-------cccceeEEEEEEccCC-ceEEEEEccCeeehhhhHH
Confidence 4 5677899999999999 9999999999999998753
No 201
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=6.7e-15 Score=129.22 Aligned_cols=303 Identities=11% Similarity=0.105 Sum_probs=198.6
Q ss_pred CccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 26 ~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
.++-.|.+.|..|.|+..|..|++|+.|..|.+||...++.. ..-..||.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--------------------------l~f~SGH~---- 185 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--------------------------LSFESGHC---- 185 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcc--------------------------cccccccc----
Confidence 344578999999999999999999999999999999886532 12345687
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEcc-CcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
..|....|.|..+.+.+++++.||.|++=.+. ++.++....+..|. +.+..++..|...+
T Consensus 186 --------~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~-----------g~vhklav~p~sp~ 246 (559)
T KOG1334|consen 186 --------NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHE-----------GPVHKLAVEPDSPK 246 (559)
T ss_pred --------cchhhhhccCCCCCcCceeccccCceeeeeeccccceecceeccccc-----------CccceeeecCCCCC
Confidence 78888889877777889999999999987763 44555555555555 78888888887543
Q ss_pred -eecceeeccceEEEEeecccccceeeEEeecCCCC---CeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCce-----e
Q 014005 185 -GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSDCE-TFVSA-DDLRINLWNLEISDQC-----F 253 (432)
Q Consensus 185 -~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~-----~ 253 (432)
+.+++. |+.+.-.|++..........- ..+.. ..++++.+|... .+++| .|..+++||.+.-... +
T Consensus 247 ~f~S~ge--D~~v~~~Dlr~~~pa~~~~cr-~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~ 323 (559)
T KOG1334|consen 247 PFLSCGE--DAVVFHIDLRQDVPAEKFVCR-EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVL 323 (559)
T ss_pred ccccccc--ccceeeeeeccCCccceeeee-ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchh
Confidence 344444 888888888854222222211 23333 678899999765 67888 9999999998732211 1
Q ss_pred eEeecCCCCc-CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc--c------ccc-ceeecccccccCCccce
Q 014005 254 NIVDMKPSNM-DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--C------DHS-ARILRDAAESHGSKSFF 323 (432)
Q Consensus 254 ~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--~------~~~-~~~~~~h~~~~~~~~~~ 323 (432)
..+ .|..+ ....-.|++++|+.++ .-|+++-.|-.|+++.-.-+.. . ... .+.+++|.+
T Consensus 324 ~~f--~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN-------- 392 (559)
T KOG1334|consen 324 DKF--CPHHLVEDDPVNITGLVYSHDG-SELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRN-------- 392 (559)
T ss_pred hhc--CCccccccCcccceeEEecCCc-cceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccc--------
Confidence 222 11111 1223469999999888 4455566677899994332111 0 011 233666632
Q ss_pred eeeecceeEEEE-cCCCCEEEEeeC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccc
Q 014005 324 TEIIASISDIKF-ANDGQHLLSRDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLI 398 (432)
Q Consensus 324 ~~~~~~v~~~~~-s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 398 (432)
...|..+-| -|...|+++|+| |.|.||+- +.++.+..... .+..+-...-.-.+++..-|.
T Consensus 393 ---~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-----------VVNCLEpHP~~PvLAsSGid~ 458 (559)
T KOG1334|consen 393 ---SRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-----------VVNCLEPHPHLPVLASSGIDH 458 (559)
T ss_pred ---ccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-----------eEeccCCCCCCchhhccCCcc
Confidence 234666655 578899999999 99999998 33333333221 111111111112367777899
Q ss_pred eeeeecc
Q 014005 399 NLSALSA 405 (432)
Q Consensus 399 ~i~~~~~ 405 (432)
.|+||..
T Consensus 459 DVKIWTP 465 (559)
T KOG1334|consen 459 DVKIWTP 465 (559)
T ss_pred ceeeecC
Confidence 9999995
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=2.9e-14 Score=136.21 Aligned_cols=260 Identities=15% Similarity=0.166 Sum_probs=169.3
Q ss_pred CcEEEEEEcC--CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 33 DIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 33 ~~V~~~~fsp--~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
..|+.+.+-. |..+|++|+.||.||||+-...... ..+.++.+.+-+ +.+...
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~----------------------~~eLVTaw~~Ls---~~~~~~ 1164 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK----------------------KPELVTAWSSLS---DQLPGA 1164 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccC----------------------CceeEEeecccc---ccCccC
Confidence 3688888754 3457899999999999984332100 011222222111 000000
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCC-CCCcceecce
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP-PSFAHGYHLE 189 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~ 189 (432)
. +.=.-+.| .....+|++++.-..|+|||....... ....... +..++.+.-+ ..+..++.|.
T Consensus 1165 r--~~~~v~dW--qQ~~G~Ll~tGd~r~IRIWDa~~E~~~--~diP~~s----------~t~vTaLS~~~~~gn~i~AGf 1228 (1387)
T KOG1517|consen 1165 R--GTGLVVDW--QQQSGHLLVTGDVRSIRIWDAHKEQVV--ADIPYGS----------STLVTALSADLVHGNIIAAGF 1228 (1387)
T ss_pred C--CCCeeeeh--hhhCCeEEecCCeeEEEEEecccceeE--eecccCC----------CccceeecccccCCceEEEee
Confidence 0 11144677 455556666666899999999876522 2222111 2345544433 2357777777
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCC--eeEEEeCCCCCE-EEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFN--INSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~-l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
. ||.+++||.+.......+..+ ..|... |..+.+.++|-- +++| .||.|++||++.. .....+ +...
T Consensus 1229 a--DGsvRvyD~R~a~~ds~v~~~-R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~e~~~-----~iv~ 1299 (1387)
T KOG1517|consen 1229 A--DGSVRVYDRRMAPPDSLVCVY-REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SKETFL-----TIVA 1299 (1387)
T ss_pred c--CCceEEeecccCCccccceee-cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC-cccccc-----eeee
Confidence 7 999999999976555566666 678777 999999987654 8888 9999999999942 222222 1122
Q ss_pred C---CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005 266 L---TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (432)
Q Consensus 266 ~---~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 342 (432)
| .+..+++..|++. .++|+|+. +.|+||++...+ +..++.+ ..+.....+.+.+++|+|.-.+|
T Consensus 1300 ~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~-----l~~~k~n------~~F~~q~~gs~scL~FHP~~~ll 1366 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQ-----LNIIKYN------PGFMGQRIGSVSCLAFHPHRLLL 1366 (1387)
T ss_pred ccccCccceeeeeccCC-CeeeecCc-ceEEEEecChhh-----hcccccC------cccccCcCCCcceeeecchhHhh
Confidence 2 2358999999998 99999998 999999988544 3444432 11222235678999999999999
Q ss_pred EEee-CCeEEEEec
Q 014005 343 LSRD-YMNLKVFRY 355 (432)
Q Consensus 343 ~s~~-~~~i~iwd~ 355 (432)
|+|. |.+|.||..
T Consensus 1367 AaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1367 AAGSADSTVSIYSC 1380 (1387)
T ss_pred hhccCCceEEEeec
Confidence 9984 499999977
No 203
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=7.5e-14 Score=131.22 Aligned_cols=251 Identities=15% Similarity=0.141 Sum_probs=169.1
Q ss_pred EEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhccee
Q 014005 38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 117 (432)
Q Consensus 38 ~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 117 (432)
-.|++|+++++.... ..|.||...++.. ++.+.+|. .++.
T Consensus 22 avfSnD~k~l~~~~~-~~V~VyS~~Tg~~---------------------------i~~l~~~~------------a~l~ 61 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTG-NFVKVYSTATGEC---------------------------ITSLEDHT------------APLT 61 (792)
T ss_pred cccccCCcEEEEeeC-CEEEEEecchHhh---------------------------hhhccccc------------Cccc
Confidence 469999998887655 4899999999874 36788898 9999
Q ss_pred EEEEEEcCCC-CEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccc------------------------
Q 014005 118 RVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN------------------------ 172 (432)
Q Consensus 118 ~l~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 172 (432)
.+.+.|++.. .++++++.||.|++||...+.+.+....+.+..............
T Consensus 62 s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~ 141 (792)
T KOG1963|consen 62 SVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQS 141 (792)
T ss_pred eeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccce
Confidence 9999775554 578899999999999999887666555443322110000000000
Q ss_pred ---------------------cccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC
Q 014005 173 ---------------------FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE 231 (432)
Q Consensus 173 ---------------------i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 231 (432)
-..+.+++.+.+..... +..+.+|+........+.+.....|...+++.+++|+++
T Consensus 142 ~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~---~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~ 218 (792)
T KOG1963|consen 142 SRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH---MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER 218 (792)
T ss_pred eeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE---eeeEEEEEecccceeeccchhhhhhcccceeEEeccccc
Confidence 00011111111111111 335566666532222222222245667789999999999
Q ss_pred EEEEE-cCCeEEEEeCCC-CCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccccee
Q 014005 232 TFVSA-DDLRINLWNLEI-SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 309 (432)
Q Consensus 232 ~l~~~-~d~~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 309 (432)
++|+| .||+|.+|.--. .+... ....+.-|...|+++.|+++| .+|++|+..|.+.+|.+.+++. +.
T Consensus 219 ~~Aa~d~dGrI~vw~d~~~~~~~~-----t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k-----qf 287 (792)
T KOG1963|consen 219 YLAAGDSDGRILVWRDFGSSDDSE-----TCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK-----QF 287 (792)
T ss_pred eEEEeccCCcEEEEeccccccccc-----cceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc-----cc
Confidence 99999 999999996541 11111 111237889999999999999 9999999999999999998773 22
Q ss_pred ecccccccCCccceeeeecceeEEEEcCCCCEEEE-eeCCeEEEEec
Q 014005 310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNLKVFRY 355 (432)
Q Consensus 310 ~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~~~i~iwd~ 355 (432)
+.. ..++|..+.+|||+.+.+. ..|+.|.+-..
T Consensus 288 LPR-------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 288 LPR-------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred ccc-------------cCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 322 2579999999999987776 47788888776
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=7e-15 Score=127.07 Aligned_cols=198 Identities=14% Similarity=0.129 Sum_probs=141.6
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceE
Q 014005 117 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 196 (432)
Q Consensus 117 ~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v 196 (432)
..++| +.+|..+++++.||++++|+..... .......+. ..|.++.|+|+++++++.+. + ..
T Consensus 148 k~vaf--~~~gs~latgg~dg~lRv~~~Ps~~--t~l~e~~~~-----------~eV~DL~FS~dgk~lasig~--d-~~ 209 (398)
T KOG0771|consen 148 KVVAF--NGDGSKLATGGTDGTLRVWEWPSML--TILEEIAHH-----------AEVKDLDFSPDGKFLASIGA--D-SA 209 (398)
T ss_pred eEEEE--cCCCCEeeeccccceEEEEecCcch--hhhhhHhhc-----------CccccceeCCCCcEEEEecC--C-ce
Confidence 67888 8899999999999999999965443 222222222 78999999999999999887 6 99
Q ss_pred EEEeecccccceeeEEee-cCCCCCeeEEEeCCCC---CE-EE-EE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 197 KIANVGNSVHARCQKVYP-HAHDFNINSISNNSDC---ET-FV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 197 ~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~---~~-l~-~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
+||+.+ ++.++.... ...+.....+.|+.++ .+ ++ .. .-+.|+.||+...... ..+ +..+.......
T Consensus 210 ~VW~~~---~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l--~~~~~~~~~~s 283 (398)
T KOG0771|consen 210 RVWSVN---TGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFL--RLRKKIKRFKS 283 (398)
T ss_pred EEEEec---cCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-ccc--chhhhhhccCc
Confidence 999999 555555442 2344556677888776 22 22 23 5667777776522221 111 01111233456
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-eeCC
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYM 348 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~~ 348 (432)
|++++.+++| +++|.|+.||.|.|++..+-+.. ...-+.| ...|+.+.|+||.+++++ +++.
T Consensus 284 iSsl~VS~dG-kf~AlGT~dGsVai~~~~~lq~~---~~vk~aH-------------~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 284 ISSLAVSDDG-KFLALGTMDGSVAIYDAKSLQRL---QYVKEAH-------------LGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred ceeEEEcCCC-cEEEEeccCCcEEEEEeceeeee---Eeehhhh-------------eeeeeeEEEcCCcCcccccccCC
Confidence 9999999999 99999999999999999876642 2223344 789999999999999998 4558
Q ss_pred eEEEEec
Q 014005 349 NLKVFRY 355 (432)
Q Consensus 349 ~i~iwd~ 355 (432)
+..+..+
T Consensus 347 ~~~v~~l 353 (398)
T KOG0771|consen 347 EAAVTKL 353 (398)
T ss_pred ceeEEEE
Confidence 8888888
No 205
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.63 E-value=5.6e-13 Score=125.72 Aligned_cols=236 Identities=23% Similarity=0.351 Sum_probs=173.5
Q ss_pred cEEEEEE-cCCCC-EEEEecc-cceEEEEEecC-CcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 34 IVSAIEF-DKTGD-YLAVGDR-GGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 34 ~V~~~~f-sp~g~-~l~t~~~-dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
.+..+.+ ++++. +++..+. |+.+.+|+... .. ....+..|.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---------------------------~~~~~~~~~-------- 155 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK---------------------------LIRTLEGHS-------- 155 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe---------------------------EEEEEecCc--------
Confidence 6777777 88887 5555444 99999999987 32 335788888
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeC-CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..|..++| +|++..+++++. |+.+++|++..+..... +..+. ..+.+++++|++..++.+
T Consensus 156 ----~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----------~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 156 ----ESVTSLAF--SPDGKLLASGSSLDGTIKLWDLRTGKPLST--LAGHT-----------DPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred ----ccEEEEEE--CCCCCEEEecCCCCCceEEEEcCCCceEEe--eccCC-----------CceEEEEEcCCcceEEEE
Confidence 88999999 889988888885 99999999987542222 22233 688999999888733333
Q ss_pred -eeeccceEEEEeecccccceeeE-EeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 189 -EWTENMATKIANVGNSVHARCQK-VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 189 -~~~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
.. ++.+++||.. ...... .+ .+|.... ...|+|++..++++ .|+.+++|+.+........+ ..
T Consensus 217 ~~~--d~~i~~wd~~---~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------~~ 282 (466)
T COG2319 217 GSS--DGTIRLWDLS---TGKLLRSTL-SGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-------SG 282 (466)
T ss_pred ecC--CCcEEEEECC---CCcEEeeec-CCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-------ec
Confidence 44 8999999777 555555 45 6777765 44899999888888 99999999999443323332 56
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeec--ccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR--DAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 343 (432)
|...+.++.|+|++ ..+++++.|+.+.+||..+... ..... .| ...+..+.|.+++..++
T Consensus 283 ~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 344 (466)
T COG2319 283 HSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKL----LSSLTLKGH-------------EGPVSSLSFSPDGSLLV 344 (466)
T ss_pred CCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCce----EEEeeeccc-------------CCceEEEEECCCCCEEE
Confidence 78899999999987 7777798899999999887664 23332 44 45688999943435555
Q ss_pred Ee--eCCeEEEEec
Q 014005 344 SR--DYMNLKVFRY 355 (432)
Q Consensus 344 s~--~~~~i~iwd~ 355 (432)
.+ .++.+++|++
T Consensus 345 ~~~~~d~~~~~~~~ 358 (466)
T COG2319 345 SGGSDDGTIRLWDL 358 (466)
T ss_pred EeecCCCcEEeeec
Confidence 54 4489999999
No 206
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=9.3e-15 Score=130.61 Aligned_cols=215 Identities=13% Similarity=0.159 Sum_probs=145.0
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
--.|.++|.|+++.++++.+.+|+.||+|+.|++....-. .+.++ .......+.||+
T Consensus 340 fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp---------~ds~d--------p~vl~~~l~Ght------ 396 (577)
T KOG0642|consen 340 FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP---------DDSYD--------PSVLSGTLLGHT------ 396 (577)
T ss_pred EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc---------ccccC--------cchhccceeccc------
Confidence 3478999999999999999999999999999987522100 00000 112335789999
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC-ccee
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGY 186 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~ 186 (432)
+.|+.+++ ++....|++++.||++++|+........+..-..+ +.-..+.+.... ...+
T Consensus 397 ------davw~l~~--s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~------------g~Plsvd~~ss~~a~~~ 456 (577)
T KOG0642|consen 397 ------DAVWLLAL--SSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEH------------GYPLSVDRTSSRPAHSL 456 (577)
T ss_pred ------cceeeeee--cccccceeeecCCceEEeeccCCcCccccCCcccc------------CCcceEeeccchhHhhh
Confidence 99999999 77778899999999999999876553111111100 112222222211 1111
Q ss_pred cceeeccceEEEEeecccccceeeEEeec------CCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecC
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVYPH------AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~ 259 (432)
. +.....+++........++.+.. .....++-+.++|++.+..++ .|+.|+++|.. .+..+..
T Consensus 457 ~-----s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~-~~~~l~s---- 526 (577)
T KOG0642|consen 457 A-----SFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK-TGKILHS---- 526 (577)
T ss_pred h-----hcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc-ccccchh----
Confidence 1 22222233222213333333311 112457788999999999999 99999999998 5655543
Q ss_pred CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccc
Q 014005 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (432)
Q Consensus 260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 299 (432)
+..|...++++++.|+| .+|++++.||.+++|.+..
T Consensus 527 ---~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 527 ---MVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred ---eeeccceecceeecCCC-ceEEeecCCceeehhhccc
Confidence 37888999999999999 9999999999999999864
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=7.4e-14 Score=116.55 Aligned_cols=213 Identities=13% Similarity=0.127 Sum_probs=165.9
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
++|+|.+| ++|...++++.....|.||.....+ .+....+..|. ..+..+.|+|....+++++.
T Consensus 11 ~pitchAw--n~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd-----------~~vtgvdWap~snrIvtcs~-- 75 (361)
T KOG1523|consen 11 EPITCHAW--NSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD-----------KIVTGVDWAPKSNRIVTCSH-- 75 (361)
T ss_pred Cceeeeee--cCCCceEEeccCCceEEEEEecCCCCceeceehhhhC-----------cceeEEeecCCCCceeEccC--
Confidence 89999999 8999999999999999999998877 67777777777 88999999999999999999
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceE
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (432)
|..-++|....+.+.++.-.+ ..+....+++.|+|.++.||+| ....|.+|-++..+.- .. ....-..+.+.|+
T Consensus 76 drnayVw~~~~~~~WkptlvL-lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW-WV---sKhikkPirStv~ 150 (361)
T KOG1523|consen 76 DRNAYVWTQPSGGTWKPTLVL-LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW-WV---SKHIKKPIRSTVT 150 (361)
T ss_pred CCCccccccCCCCeeccceeE-EEeccceeeEeecCcCceEEeccCccEEEEEEEecccce-eh---hhhhCCcccccee
Confidence 999999998655566666666 6788899999999999999999 8889999988832221 00 0011256677899
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccc--cCCc-------cceeeeecceeEEEEcCCCCEE
Q 014005 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES--HGSK-------SFFTEIIASISDIKFANDGQHL 342 (432)
Q Consensus 272 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~--~~~~-------~~~~~~~~~v~~~~~s~dg~~l 342 (432)
++.|+|++ -+|++|+.|+..+++..-- +..+..+.. ...+ ..+....+++..+.|+|+|..|
T Consensus 151 sldWhpnn-VLlaaGs~D~k~rVfSayI--------K~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~l 221 (361)
T KOG1523|consen 151 SLDWHPNN-VLLAAGSTDGKCRVFSAYI--------KGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRL 221 (361)
T ss_pred eeeccCCc-ceecccccCcceeEEEEee--------eccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEe
Confidence 99999998 9999999999999997542 222221111 1111 1122235799999999999999
Q ss_pred EE-eeCCeEEEEec
Q 014005 343 LS-RDYMNLKVFRY 355 (432)
Q Consensus 343 ~s-~~~~~i~iwd~ 355 (432)
+- +.|.++.+=|.
T Consensus 222 awv~Hds~v~~~da 235 (361)
T KOG1523|consen 222 AWVGHDSTVSFVDA 235 (361)
T ss_pred eEecCCCceEEeec
Confidence 86 56688888888
No 208
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=1.7e-13 Score=121.91 Aligned_cols=162 Identities=9% Similarity=0.132 Sum_probs=111.7
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccC--CCCCcceecceee
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN--PPSFAHGYHLEWT 191 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~ 191 (432)
..|+++.|.|. +...|+.+-.+|.+.++|.+-.- ......+ .+++..+..
T Consensus 220 tsvT~ikWvpg-~~~~Fl~a~~sGnlyly~~~~~~-----------------------~~t~p~~~~~k~~~~f~i---- 271 (636)
T KOG2394|consen 220 SSVTCIKWVPG-SDSLFLVAHASGNLYLYDKEIVC-----------------------GATAPSYQALKDGDQFAI---- 271 (636)
T ss_pred cceEEEEEEeC-CCceEEEEEecCceEEeeccccc-----------------------cCCCCcccccCCCCeeEE----
Confidence 78999999863 44567777889999999873211 0000000 111111111
Q ss_pred ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (432)
..|.-. .+..++..+ .--.+.|+.++|+|||++||+. .||.++|||.. +...+-+ ++..-+..
T Consensus 272 -----~t~ksk--~~rNPv~~w-~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd-t~eLlg~-------mkSYFGGL 335 (636)
T KOG2394|consen 272 -----LTSKSK--KTRNPVARW-HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFD-TQELLGV-------MKSYFGGL 335 (636)
T ss_pred -----eeeecc--ccCCcccee-EeccccccceeEcCCCceEEEEecCceEEEeecc-HHHHHHH-------HHhhccce
Confidence 111111 122333333 2234589999999999999998 99999999998 3333332 24555779
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC
Q 014005 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (432)
Q Consensus 271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~ 337 (432)
.|++|+||| +++++|++|..|.||.+..+++ +..=++| ..+|+.++|.|
T Consensus 336 LCvcWSPDG-KyIvtGGEDDLVtVwSf~erRV----VARGqGH-------------kSWVs~VaFDp 384 (636)
T KOG2394|consen 336 LCVCWSPDG-KYIVTGGEDDLVTVWSFEERRV----VARGQGH-------------KSWVSVVAFDP 384 (636)
T ss_pred EEEEEcCCc-cEEEecCCcceEEEEEeccceE----EEecccc-------------ccceeeEeecc
Confidence 999999999 9999999999999999998876 5666776 89999999998
No 209
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=1.9e-13 Score=113.00 Aligned_cols=155 Identities=12% Similarity=0.132 Sum_probs=106.6
Q ss_pred cccCCCCCcceecceeec--------cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEE--E-cCCeEEE
Q 014005 175 NEHNPPSFAHGYHLEWTE--------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINL 243 (432)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~--------~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~-~d~~i~l 243 (432)
.+.|+++|.++..-.... -+...+|.++.. ......+.....+.|.+++|+|+|+.+++ | .++.+.+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~--~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEK--NIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecC--CCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 466777777666554311 235666666432 12233332334557999999999998764 4 5789999
Q ss_pred EeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeC---CCeEEEEEccccccccccceeecccccccCCc
Q 014005 244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSK 320 (432)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~ 320 (432)
||++ ...+..+ ....++.+.|+|+| ++|++|+. .|.|.+||.++.+. +..++.
T Consensus 88 yd~~--~~~i~~~---------~~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~----i~~~~~-------- 143 (194)
T PF08662_consen 88 YDVK--GKKIFSF---------GTQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKK----ISTFEH-------- 143 (194)
T ss_pred EcCc--ccEeEee---------cCCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEE----eecccc--------
Confidence 9998 4444433 23567899999999 99998874 46799999997654 344433
Q ss_pred cceeeeecceeEEEEcCCCCEEEEee-------CCeEEEEec--CcceeEe
Q 014005 321 SFFTEIIASISDIKFANDGQHLLSRD-------YMNLKVFRY--EPVMTLS 362 (432)
Q Consensus 321 ~~~~~~~~~v~~~~~s~dg~~l~s~~-------~~~i~iwd~--~~~~~~~ 362 (432)
..++.++|||||++|+++. |+.++||+. +.+....
T Consensus 144 -------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 144 -------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred -------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 4578999999999999852 588899999 4444443
No 210
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=5.7e-12 Score=101.49 Aligned_cols=217 Identities=15% Similarity=0.249 Sum_probs=144.1
Q ss_pred CCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCC
Q 014005 22 ERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE 101 (432)
Q Consensus 22 ~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~ 101 (432)
+........|.++|+.++|. ..+|++|+ ||.|+=|..+...... ...|.++..-.+ |.
T Consensus 52 k~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~-----------------~~K~lwe~~~P~--~~ 109 (325)
T KOG0649|consen 52 KLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESL-----------------ATKRLWEVKIPM--QV 109 (325)
T ss_pred CcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhc-----------------cchhhhhhcCcc--cc
Confidence 33344456799999999998 45677765 4999999876543210 000111111111 11
Q ss_pred ccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC
Q 014005 102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (432)
Q Consensus 102 ~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 181 (432)
+ .+++ -.|+++.. .|..+.+++++.|+.++-||+++|+.+
T Consensus 110 ---~---~~ev-PeINam~l--dP~enSi~~AgGD~~~y~~dlE~G~i~------------------------------- 149 (325)
T KOG0649|consen 110 ---D---AVEV-PEINAMWL--DPSENSILFAGGDGVIYQVDLEDGRIQ------------------------------- 149 (325)
T ss_pred ---C---cccC-CccceeEe--ccCCCcEEEecCCeEEEEEEecCCEEE-------------------------------
Confidence 0 0111 45788888 667777777879999999999987633
Q ss_pred CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCC
Q 014005 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (432)
Q Consensus 182 ~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~ 260 (432)
+++ .+|++.+.++.--.....+++| .||++++||.+ +.++.+.+..-.
T Consensus 150 -----------------------------r~~-rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~k-t~k~v~~ie~yk 198 (325)
T KOG0649|consen 150 -----------------------------REY-RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTK-TQKHVSMIEPYK 198 (325)
T ss_pred -----------------------------EEE-cCCcceeeeeeecccCcceeecCCCccEEEEecc-ccceeEEecccc
Confidence 334 7999999999985555577788 99999999999 677777663311
Q ss_pred --CCcCC-CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC
Q 014005 261 --SNMDD-LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (432)
Q Consensus 261 --~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~ 337 (432)
..+.. ...+|.+++-+. ..|++|+ ...+.+|.+++.+. ..+|.- .+.+..+.|-.
T Consensus 199 ~~~~lRp~~g~wigala~~e---dWlvCGg-Gp~lslwhLrsse~----t~vfpi--------------pa~v~~v~F~~ 256 (325)
T KOG0649|consen 199 NPNLLRPDWGKWIGALAVNE---DWLVCGG-GPKLSLWHLRSSES----TCVFPI--------------PARVHLVDFVD 256 (325)
T ss_pred ChhhcCcccCceeEEEeccC---ceEEecC-CCceeEEeccCCCc----eEEEec--------------ccceeEeeeec
Confidence 12222 345677777653 5676555 55799999998765 466655 46788899875
Q ss_pred CCCEEEEee-CCeEEEEec
Q 014005 338 DGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 338 dg~~l~s~~-~~~i~iwd~ 355 (432)
| .+++++ .+.+.-|.+
T Consensus 257 d--~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 257 D--CVLIGGEGNHVQSYTL 273 (325)
T ss_pred c--eEEEeccccceeeeee
Confidence 5 555554 489999988
No 211
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2.2e-12 Score=120.92 Aligned_cols=201 Identities=11% Similarity=0.109 Sum_probs=130.8
Q ss_pred cceeEEEEEEcCCCCEEEEEe---CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 114 EKINRVRWCAAPNGSMFILST---NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
..+...+| +|||+.|+..+ .+..+.+|++.+++.+.+..+. +......|+|++..++....
T Consensus 199 ~~~~~p~w--SPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~--------------~~~~~~~~SPDG~~La~~~~ 262 (429)
T PRK03629 199 QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP--------------RHNGAPAFSPDGSKLAFALS 262 (429)
T ss_pred CceeeeEE--cCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC--------------CCcCCeEECCCCCEEEEEEc
Confidence 67889999 89999988764 3457999999888755554332 23456789999998876432
Q ss_pred e-ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEE--eCCCCCceeeEeecCCCCcCC
Q 014005 191 T-ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 191 ~-~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lw--d~~~~~~~~~~~~~~~~~~~~ 265 (432)
. ....|.+||+. .+...+.. .+...+....|+|+|+.++.. .++...+| |+. ++.. ..+ ..
T Consensus 263 ~~g~~~I~~~d~~---tg~~~~lt--~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-~g~~-~~l-------t~ 328 (429)
T PRK03629 263 KTGSLNLYVMDLA---SGQIRQVT--DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-GGAP-QRI-------TW 328 (429)
T ss_pred CCCCcEEEEEECC---CCCEEEcc--CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-CCCe-EEe-------ec
Confidence 1 13368888887 44443332 344567889999999988766 34544555 555 3322 222 22
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCC---CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 342 (432)
.........|+|+| +.|+..+.+ ..|.+||+.+++. ..+.. ........|+|||++|
T Consensus 329 ~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~-----~~Lt~--------------~~~~~~p~~SpDG~~i 388 (429)
T PRK03629 329 EGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV-----QVLTD--------------TFLDETPSIAPNGTMV 388 (429)
T ss_pred CCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCCe-----EEeCC--------------CCCCCCceECCCCCEE
Confidence 23345678999999 777766543 3588899987763 44443 1223467899999999
Q ss_pred EEe-eC---CeEEEEec--CcceeEeec
Q 014005 343 LSR-DY---MNLKVFRY--EPVMTLSFC 364 (432)
Q Consensus 343 ~s~-~~---~~i~iwd~--~~~~~~~~~ 364 (432)
+.+ .+ ..+.++++ ...+.+..+
T Consensus 389 ~~~s~~~~~~~l~~~~~~G~~~~~l~~~ 416 (429)
T PRK03629 389 IYSSSQGMGSVLNLVSTDGRFKARLPAT 416 (429)
T ss_pred EEEEcCCCceEEEEEECCCCCeEECccC
Confidence 875 33 24677777 444555443
No 212
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.56 E-value=1.4e-13 Score=111.81 Aligned_cols=249 Identities=11% Similarity=0.090 Sum_probs=150.7
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCccee-eeee--------cC
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK-TEFQ--------SH 100 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~--------~h 100 (432)
.+...|+.+..-|+ ..|.+-++|..+.+|++..+..+...... ++..+..-.+.++..+.. +.+. -|
T Consensus 54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~---~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h 129 (323)
T KOG0322|consen 54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIV---VNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETH 129 (323)
T ss_pred hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeee---ccccccccceeccCCCcchhheecCCcccchhh
Confidence 46778999998887 45788899999999998774432111000 000010000001100000 0000 00
Q ss_pred Ccc-----cccc---chhhhhcceeEEEEEEcCCCC--EEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccc
Q 014005 101 EPE-----FDYL---KSLEIEEKINRVRWCAAPNGS--MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (432)
Q Consensus 101 ~~~-----~~~~---~~~~~~~~v~~l~~~~s~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (432)
..+ ...+ ......+.+.+..|- ..++. +++.|-.+|++.+||+.++. ++..+.....+++ ......
T Consensus 130 ~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~-~~c~s~~lllaGyEsghvv~wd~S~~~--~~~~~~~~~kv~~-~~ash~ 205 (323)
T KOG0322|consen 130 KQDGGDTTQVQIADDSERSKLGSVMCQDKD-HACGSTFLLLAGYESGHVVIWDLSTGD--KIIQLPQSSKVES-PNASHK 205 (323)
T ss_pred hhccCccceeEccCchhccccCceeeeecc-ccccceEEEEEeccCCeEEEEEccCCc--eeecccccccccc-chhhcc
Confidence 000 0000 011112566666652 23333 35566789999999998863 1111111100000 011123
Q ss_pred cccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCC
Q 014005 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 249 (432)
Q Consensus 171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~ 249 (432)
.++.++.+.+....-+.|+. +..+..|.++.....-.++.+..-....+..+.+-||++.+|++ .|+.|++|..+ +
T Consensus 206 qpvlsldyas~~~rGisgga--~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr-t 282 (323)
T KOG0322|consen 206 QPVLSLDYASSCDRGISGGA--DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR-T 282 (323)
T ss_pred CcceeeeechhhcCCcCCCc--cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEec-c
Confidence 67888888877666666666 77888888875421112222212234468889999999999999 99999999999 6
Q ss_pred CceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (432)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~ 297 (432)
...+.++ .-|.+.|++++|+|+. .++|+++.|++|.+|++
T Consensus 283 l~pLAVL-------kyHsagvn~vAfspd~-~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 283 LNPLAVL-------KYHSAGVNAVAFSPDC-ELMAAASKDARISLWKL 322 (323)
T ss_pred CCchhhh-------hhhhcceeEEEeCCCC-chhhhccCCceEEeeec
Confidence 7777766 8899999999999997 99999999999999986
No 213
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.56 E-value=2.6e-14 Score=133.25 Aligned_cols=206 Identities=10% Similarity=0.132 Sum_probs=148.5
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
..|+|..| ...|.++++|+.|..++||..++.. .+....+|. +.|+.++.+....+++.++. |
T Consensus 191 naVyca~f--Drtg~~Iitgsdd~lvKiwS~et~~--~lAs~rGhs-----------~ditdlavs~~n~~iaaaS~--D 253 (1113)
T KOG0644|consen 191 NAVYCAIF--DRTGRYIITGSDDRLVKIWSMETAR--CLASCRGHS-----------GDITDLAVSSNNTMIAAASN--D 253 (1113)
T ss_pred hheeeeee--ccccceEeecCccceeeeeeccchh--hhccCCCCc-----------cccchhccchhhhhhhhccc--C
Confidence 88999999 8999999999999999999988776 455566666 89999999999999999998 9
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEE
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 273 (432)
..|++|.+. .+.++..+ .+|++.|++++|+|-. .++.||++++||.+.. . .++..+|..+.+. .-+.++
T Consensus 254 ~vIrvWrl~---~~~pvsvL-rghtgavtaiafsP~~---sss~dgt~~~wd~r~~--~-~~y~prp~~~~~~-~~~~s~ 322 (1113)
T KOG0644|consen 254 KVIRVWRLP---DGAPVSVL-RGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLE--P-RIYVPRPLKFTEK-DLVDSI 322 (1113)
T ss_pred ceEEEEecC---CCchHHHH-hccccceeeeccCccc---cCCCCCceEecccccc--c-cccCCCCCCcccc-cceeee
Confidence 999999999 77888888 8999999999999965 3449999999999811 1 1111111111110 112222
Q ss_pred EEcCCC------------------------------------CcEEEEEeCCCeEEEEEccccccccccceeeccccccc
Q 014005 274 EFHPIY------------------------------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH 317 (432)
Q Consensus 274 ~~~p~~------------------------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~ 317 (432)
.|...+ ..+.+++-.+-.+.+|++-+|.+ ...+.+|
T Consensus 323 ~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l----~H~l~gh---- 394 (1113)
T KOG0644|consen 323 LFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL----LHNLMGH---- 394 (1113)
T ss_pred eccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchh----hhhhccc----
Confidence 222221 12333333445567777777765 4666665
Q ss_pred CCccceeeeecceeEEEEcCCCCEEE-E-eeCCeEEEEec---CcceeEeec
Q 014005 318 GSKSFFTEIIASISDIKFANDGQHLL-S-RDYMNLKVFRY---EPVMTLSFC 364 (432)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~s~dg~~l~-s-~~~~~i~iwd~---~~~~~~~~~ 364 (432)
...+..+.++|-+..++ + |-||...|||+ .+++.+...
T Consensus 395 ---------sd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g 437 (1113)
T KOG0644|consen 395 ---------SDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG 437 (1113)
T ss_pred ---------ccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc
Confidence 78899999999776665 3 45599999999 677766643
No 214
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.2e-12 Score=122.80 Aligned_cols=184 Identities=15% Similarity=0.130 Sum_probs=121.2
Q ss_pred cceeEEEEEEcCCCCEEEEEeCC---CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec-ce
Q 014005 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH-LE 189 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~ 189 (432)
..+.+.+| +|||+.|+..+.+ ..|.+||+.+++...+.... +......|+|++..++. ..
T Consensus 196 ~~v~~p~w--SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~--------------g~~~~~~~SPDG~~la~~~~ 259 (427)
T PRK02889 196 EPIISPAW--SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK--------------GSNSAPAWSPDGRTLAVALS 259 (427)
T ss_pred CCcccceE--cCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC--------------CCccceEECCCCCEEEEEEc
Confidence 77889999 8999999887643 46999999988765543332 34557899999988764 34
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
. ++...+|.++.. .+. .+.+ ..+........|+|||+.++.. .++...+|.++..+...+.+ ....
T Consensus 260 ~--~g~~~Iy~~d~~-~~~-~~~l-t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-------t~~g 327 (427)
T PRK02889 260 R--DGNSQIYTVNAD-GSG-LRRL-TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-------TFTG 327 (427)
T ss_pred c--CCCceEEEEECC-CCC-cEEC-CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-------ecCC
Confidence 4 566666665422 222 3333 3444556678999999988855 45666777654222222222 1111
Q ss_pred cceEEEEEcCCCCcEEEEEeCCC---eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
.......|+|+| +.|+..+.++ .|.+||+.+++. +.+.. ........|+|||++|+.
T Consensus 328 ~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~-----~~lt~--------------~~~~~~p~~spdg~~l~~ 387 (427)
T PRK02889 328 SYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQV-----TALTD--------------TTRDESPSFAPNGRYILY 387 (427)
T ss_pred CCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCCe-----EEccC--------------CCCccCceECCCCCEEEE
Confidence 223467899999 8888776554 699999987764 34433 123467899999999887
Q ss_pred e
Q 014005 345 R 345 (432)
Q Consensus 345 ~ 345 (432)
.
T Consensus 388 ~ 388 (427)
T PRK02889 388 A 388 (427)
T ss_pred E
Confidence 5
No 215
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=4e-12 Score=108.39 Aligned_cols=160 Identities=16% Similarity=0.152 Sum_probs=122.6
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecC-CCCccccccccccccccccccCCCCCcceecceeec
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD-HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
..|.++.+ +.++|+++-.+ .|.|||++.-++....... .++ ..+.+++++..+.+++--+...
T Consensus 88 t~IL~Vrm----Nr~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~-----------~gl~AlS~n~~n~ylAyp~s~t 151 (391)
T KOG2110|consen 88 TSILAVRM----NRKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNP-----------KGLCALSPNNANCYLAYPGSTT 151 (391)
T ss_pred CceEEEEE----ccceEEEEEcc-cEEEEecccceeehhhhccCCCc-----------cceEeeccCCCCceEEecCCCC
Confidence 67888888 34567777554 4999999887643322221 222 4455666666667777666556
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe-EEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (432)
.|.|.+||.. +.++...+ ..|.+.+.+++|+++|.++|++ +.|+ ||++.+. .++.+..++ . ......|
T Consensus 152 ~GdV~l~d~~---nl~~v~~I-~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~-~G~kl~eFR--R---G~~~~~I 221 (391)
T KOG2110|consen 152 SGDVVLFDTI---NLQPVNTI-NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP-EGQKLYEFR--R---GTYPVSI 221 (391)
T ss_pred CceEEEEEcc---cceeeeEE-EecCCceeEEEECCCCCEEEEeccCceEEEEEEcC-CccEeeeee--C---CceeeEE
Confidence 8999999998 77888888 7999999999999999999999 6665 7999998 777777661 1 1224568
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcccc
Q 014005 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (432)
Q Consensus 271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~ 300 (432)
.+++|+|++ ++|++.+..++|.+|.+...
T Consensus 222 ySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 222 YSLSFSPDS-QFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EEEEECCCC-CeEEEecCCCeEEEEEeccc
Confidence 999999999 99999999999999998753
No 216
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=2.4e-12 Score=121.22 Aligned_cols=192 Identities=13% Similarity=0.061 Sum_probs=126.5
Q ss_pred cceeEEEEEEcCCCCEEEEEeC---CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc-e
Q 014005 114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL-E 189 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~ 189 (432)
..+.+.+| +|||+.|+..+. +..|.+||+.+++...+.... +......|+|++..++.. .
T Consensus 204 ~~v~~p~w--SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~--------------g~~~~~~~SpDG~~l~~~~s 267 (433)
T PRK04922 204 EPILSPAW--SPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR--------------GINGAPSFSPDGRRLALTLS 267 (433)
T ss_pred CccccccC--CCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC--------------CCccCceECCCCCEEEEEEe
Confidence 67889999 899999988764 346999999888755543332 334568999999877644 3
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCe--EEEEeCCCCCceeeEeecCCCCcCC
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~--i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
...+..+.+||+. .+...+ + ..+.......+|+|+|+.++.+ .++. |+++|+. +++... + ..
T Consensus 268 ~~g~~~Iy~~d~~---~g~~~~-l-t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~-~g~~~~-l-------t~ 333 (433)
T PRK04922 268 RDGNPEIYVMDLG---SRQLTR-L-TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS-GGSAER-L-------TF 333 (433)
T ss_pred CCCCceEEEEECC---CCCeEE-C-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCeEE-e-------ec
Confidence 3113478888887 333333 3 3444455678999999988866 4454 6666665 333222 2 11
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCC---eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 342 (432)
+.......+|+|+| +.|+..+.++ .|.+||+.+++. +.+.. ........|+|||++|
T Consensus 334 ~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~-----~~Lt~--------------~~~~~~p~~spdG~~i 393 (433)
T PRK04922 334 QGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSV-----RTLTP--------------GSLDESPSFAPNGSMV 393 (433)
T ss_pred CCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCCe-----EECCC--------------CCCCCCceECCCCCEE
Confidence 22334568999999 7777665433 699999987764 34433 1234567899999988
Q ss_pred EEe-eC---CeEEEEec
Q 014005 343 LSR-DY---MNLKVFRY 355 (432)
Q Consensus 343 ~s~-~~---~~i~iwd~ 355 (432)
+.. .+ ..|.++++
T Consensus 394 ~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 394 LYATREGGRGVLAAVST 410 (433)
T ss_pred EEEEecCCceEEEEEEC
Confidence 764 22 46777777
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=2e-12 Score=110.95 Aligned_cols=251 Identities=13% Similarity=0.109 Sum_probs=172.2
Q ss_pred ccCCCcEEEEEEcCCCC--EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 29 LQDVDIVSAIEFDKTGD--YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~--~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
+...+.|+.+.|.-+++ .|...+.|..+..+.++...... +...........
T Consensus 52 ~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s---------------------~~~~~~~~~l~~----- 105 (412)
T KOG3881|consen 52 VDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISS---------------------SLDDAKTVSLGT----- 105 (412)
T ss_pred cchhhhhhhheeecCCceeEeeccccCcccccccccCCcccc---------------------cccccccccccc-----
Confidence 34456788888876554 45555566677777766654320 000111222233
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
++|-.++. .|+ .|++|-.+|.+.+|..+.+. ...+..+..+ .++..+.-++....
T Consensus 106 -------~~I~gl~~---~dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g------------~g~~~~r~~~~~p~ 162 (412)
T KOG3881|consen 106 -------KSIKGLKL---ADG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG------------PGLYDVRQTDTDPY 162 (412)
T ss_pred -------ccccchhh---cCC-EEEEEecCCcEEEEeccCCccccccceeeecC------------CceeeeccCCCCCc
Confidence 66777776 345 78888889999999998554 1222222222 34555555665555
Q ss_pred eec-ceeeccceEEEEeecccccceeeEEeecC--------CCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCCCCCce
Q 014005 185 GYH-LEWTENMATKIANVGNSVHARCQKVYPHA--------HDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQC 252 (432)
Q Consensus 185 ~~~-~~~~~~~~v~i~d~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~--~~~l~~~-~d~~i~lwd~~~~~~~ 252 (432)
++. |+...-..+++||++. .+.+..-+.- -.-+++++.|-+. ...|+++ .-+.+++||.+...++
T Consensus 163 Iva~GGke~~n~lkiwdle~---~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP 239 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQ---SKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP 239 (412)
T ss_pred eEecCchhcccceeeeeccc---ceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc
Confidence 544 6662227899999983 3222211000 1235778889887 8889999 9999999999977777
Q ss_pred eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeE
Q 014005 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (432)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~ 332 (432)
+..+ .-...+++++...|++ +.+++|..-|.+..||+++++.. ...+.+ ..++|.+
T Consensus 240 V~~f-------d~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~---g~~~kg-------------~tGsirs 295 (412)
T KOG3881|consen 240 VAQF-------DFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKLL---GCGLKG-------------ITGSIRS 295 (412)
T ss_pred eeEe-------ccccCcceeeeecCCC-cEEEEecccchhheecccCceee---ccccCC-------------ccCCcce
Confidence 7766 5556789999999999 99999999999999999998863 233555 3689999
Q ss_pred EEEcCCCCEEEEe-eCCeEEEEec
Q 014005 333 IKFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 333 ~~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
+..+|.+++||++ =|..+||+|+
T Consensus 296 ih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 296 IHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred EEEcCCCceEEeeccceeEEEeec
Confidence 9999999999996 4599999999
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.9e-12 Score=120.15 Aligned_cols=219 Identities=12% Similarity=0.131 Sum_probs=140.5
Q ss_pred cCCCcEEEEEEcCCCCEEEEecc---cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
.+...+.+.+|||||+.|+..+. +..|.+|++.+++.. .+..+.
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-------------------------~l~~~~-------- 242 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-------------------------QVASFP-------- 242 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-------------------------EccCCC--------
Confidence 44567999999999999987542 357899998776421 112222
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEE-eCCC--eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILS-TNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 183 (432)
..+....| +|||+.|+.. +.+| .|.+||+.+++...+... . ..+....|+|+++
T Consensus 243 -------~~~~~~~~--SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~---~-----------~~~~~~~wSPDG~ 299 (429)
T PRK03629 243 -------RHNGAPAF--SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG---R-----------SNNTEPTWFPDSQ 299 (429)
T ss_pred -------CCcCCeEE--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC---C-----------CCcCceEECCCCC
Confidence 33446789 8999988765 4444 588999988876544322 1 3466789999999
Q ss_pred ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cC--CeEEEEeCCCCCceeeEeecC
Q 014005 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD--LRINLWNLEISDQCFNIVDMK 259 (432)
Q Consensus 184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d--~~i~lwd~~~~~~~~~~~~~~ 259 (432)
.++..+.. ++...+|.++.. .+...+ + ...........|+|+|+.++.. .+ ..|.+||++ ++.. ..+
T Consensus 300 ~I~f~s~~-~g~~~Iy~~d~~-~g~~~~-l-t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~-~g~~-~~L--- 370 (429)
T PRK03629 300 NLAYTSDQ-AGRPQVYKVNIN-GGAPQR-I-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA-TGGV-QVL--- 370 (429)
T ss_pred EEEEEeCC-CCCceEEEEECC-CCCeEE-e-ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECC-CCCe-EEe---
Confidence 88765531 334455543321 222222 2 2233455678999999998865 33 358888988 4432 322
Q ss_pred CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCe---EEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc
Q 014005 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF---VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (432)
Q Consensus 260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s 336 (432)
... .......|+||| +.|+.++.++. +.++++. |+. .+.+..| .+.+...+|+
T Consensus 371 ----t~~-~~~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~~-G~~----~~~l~~~-------------~~~~~~p~Ws 426 (429)
T PRK03629 371 ----TDT-FLDETPSIAPNG-TMVIYSSSQGMGSVLNLVSTD-GRF----KARLPAT-------------DGQVKFPAWS 426 (429)
T ss_pred ----CCC-CCCCCceECCCC-CEEEEEEcCCCceEEEEEECC-CCC----eEECccC-------------CCCcCCcccC
Confidence 111 123467899999 88888887764 6777775 333 3556665 5678888888
Q ss_pred C
Q 014005 337 N 337 (432)
Q Consensus 337 ~ 337 (432)
|
T Consensus 427 p 427 (429)
T PRK03629 427 P 427 (429)
T ss_pred C
Confidence 7
No 219
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=7.6e-12 Score=118.03 Aligned_cols=192 Identities=11% Similarity=0.053 Sum_probs=127.5
Q ss_pred cceeEEEEEEcCCCCEEEEEeC---CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc-e
Q 014005 114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL-E 189 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~ 189 (432)
..+...+| +|||+.|+..+. +..|.+||+.+++...+.... +.+....|+|++..++.. .
T Consensus 202 ~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~--------------g~~~~~~~SPDG~~la~~~~ 265 (435)
T PRK05137 202 SLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFP--------------GMTFAPRFSPDGRKVVMSLS 265 (435)
T ss_pred CCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCC--------------CcccCcEECCCCCEEEEEEe
Confidence 78999999 899999888753 468999999988765543332 456678999999877643 3
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
......|.++|+. .+...+ + ..+........|+|||+.++.. .++ .|+++|+. ++.... + ..
T Consensus 266 ~~g~~~Iy~~d~~---~~~~~~-L-t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~-g~~~~~-l-------t~ 331 (435)
T PRK05137 266 QGGNTDIYTMDLR---SGTTTR-L-TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD-GSNPRR-I-------SF 331 (435)
T ss_pred cCCCceEEEEECC---CCceEE-c-cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC-CCCeEE-e-------ec
Confidence 3113356677776 333333 3 3455566779999999988866 333 67788877 333322 2 22
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCC---CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 342 (432)
....+....|+|+| +.|+..+.+ ..|.+||+.++.. +.+.. ...+..+.|+|||++|
T Consensus 332 ~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~~-----~~lt~--------------~~~~~~p~~spDG~~i 391 (435)
T PRK05137 332 GGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSGE-----RILTS--------------GFLVEGPTWAPNGRVI 391 (435)
T ss_pred CCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCCCce-----EeccC--------------CCCCCCCeECCCCCEE
Confidence 23446678899999 777776543 3688888765432 33333 2346678999999988
Q ss_pred EEe-eC-C-----eEEEEec
Q 014005 343 LSR-DY-M-----NLKVFRY 355 (432)
Q Consensus 343 ~s~-~~-~-----~i~iwd~ 355 (432)
+.. .+ + .++++|+
T Consensus 392 ~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 392 MFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred EEEEccCCCCCcceEEEEEC
Confidence 763 22 2 4666676
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.6e-12 Score=110.41 Aligned_cols=204 Identities=15% Similarity=0.204 Sum_probs=141.5
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
-+.-++|++.-..+|++..|-.|++|+-.... ...++.-. .
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~----------------------------pt~Lks~s-----------Q 140 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC----------------------------PTKLKSVS-----------Q 140 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCC----------------------------Cceecchh-----------h
Confidence 47788999866668899999999999976632 12333321 1
Q ss_pred cceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 114 EKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 114 ~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
..|.+++| .|. +..|+.|+..| |.+|...... ......+.
T Consensus 141 rnvtclaw--RPlsaselavgCr~g-IciW~~s~tln~~r~~~~~----------------------------------- 182 (445)
T KOG2139|consen 141 RNVTCLAW--RPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMM----------------------------------- 182 (445)
T ss_pred cceeEEEe--ccCCcceeeeeecce-eEEEEcCcccccccccccc-----------------------------------
Confidence 67999999 554 34677887755 9999876432 11100000
Q ss_pred ccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 192 ENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
...+.+.+. .+| ..|++++|++||..++++ .|..|.+||.+ .+..+... ....+
T Consensus 183 --------------s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpd-tg~~~pL~-------~~glg 239 (445)
T KOG2139|consen 183 --------------STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPD-TGQKIPLI-------PKGLG 239 (445)
T ss_pred --------------cccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCC-CCCccccc-------ccCCC
Confidence 111111221 344 689999999999999987 79999999999 56655432 23345
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCC
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM 348 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~ 348 (432)
.++-+.||||+ .+|+++.-|+..++|+......+ .+-..+ .+.|...+|+|+|++|.-...+
T Consensus 240 g~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~---erw~lg--------------sgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 240 GFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTK---ERWILG--------------SGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred ceeeEEEcCCC-CEEEEecccceeeeehhccccee---cceecc--------------CCceeeeeecCCCCEEEEEEcC
Confidence 68899999999 89999999999999965543322 122233 4689999999999988876557
Q ss_pred eEEEEec
Q 014005 349 NLKVFRY 355 (432)
Q Consensus 349 ~i~iwd~ 355 (432)
.-++|.+
T Consensus 302 sp~lysl 308 (445)
T KOG2139|consen 302 SPRLYSL 308 (445)
T ss_pred CceEEEE
Confidence 7777777
No 221
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.52 E-value=2.3e-12 Score=125.33 Aligned_cols=230 Identities=13% Similarity=0.193 Sum_probs=146.5
Q ss_pred ccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccc
Q 014005 87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 166 (432)
Q Consensus 87 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 166 (432)
|+|....+..+.-|. ..|..++.+ ++++.+|++|+.||+|++|+...-.... .
T Consensus 1034 W~p~G~lVAhL~Ehs------------~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~-------~------- 1086 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHS------------SAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEG-------G------- 1086 (1431)
T ss_pred CCccceEeehhhhcc------------ccccceeec-CCCCceEEEecCCceEEEeeehhhhcCc-------c-------
Confidence 455666777777777 788888885 4566999999999999999986432100 0
Q ss_pred cccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEe
Q 014005 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN 245 (432)
Q Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd 245 (432)
..++..++ ......+.++...+.+..+|++ .||.|++.+
T Consensus 1087 ---------------------------------------s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1087 ---------------------------------------SARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR 1126 (1431)
T ss_pred ---------------------------------------eeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEE
Confidence 22333333 3345688899999999999999 999999999
Q ss_pred CCCCCce-eeEeecCCCCcCCCCcceEEEEEcCCCC-cEEEEEeCCCeEEEEEccccccccccceeecccccccCCccce
Q 014005 246 LEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (432)
Q Consensus 246 ~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~ 323 (432)
++..... .................+..-+|..... ..++++..-+.|..||+++.... ..++..
T Consensus 1127 id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~----w~lk~~---------- 1192 (1431)
T KOG1240|consen 1127 IDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA----WRLKNQ---------- 1192 (1431)
T ss_pred ccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH----HhhhcC----------
Confidence 9842211 1111111111222233344445543332 37888999999999999976642 222210
Q ss_pred eeeecceeEEEEcCCCCEEEEeeC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeec-ccc
Q 014005 324 TEIIASISDIKFANDGQHLLSRDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTL-YLI 398 (432)
Q Consensus 324 ~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~ 398 (432)
...+.|++++.+|.+.+++.|+. |.+-+||+ .++.....+.. .++. +.-+|..+...+ ..+.+|+ ..+
T Consensus 1193 -~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~----~v~~~~~~~~~S-~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1193 -LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIR----HVWLCPTYPQES-VSVSAGSSSNN 1265 (1431)
T ss_pred -ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcc----eEEeeccCCCCc-eEEEecccCCC
Confidence 01389999999999999999966 99999999 45555444321 1111 112333333222 2355555 678
Q ss_pred eeeeec
Q 014005 399 NLSALS 404 (432)
Q Consensus 399 ~i~~~~ 404 (432)
.+.+|+
T Consensus 1266 evs~wn 1271 (1431)
T KOG1240|consen 1266 EVSTWN 1271 (1431)
T ss_pred ceeeee
Confidence 899999
No 222
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.51 E-value=2.7e-13 Score=120.63 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=137.1
Q ss_pred CccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 26 ~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
...-.|.+.|.|-.|+|+|.-|++++.||.|++|....... .++....
T Consensus 98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR----------------------------Stl~Q~~---- 145 (737)
T KOG1524|consen 98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR----------------------------STVVQNE---- 145 (737)
T ss_pred hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHH----------------------------HHHhhcC----
Confidence 33446888999999999999999999999999999765421 1222333
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 185 (432)
.+|.|++| .|+.+.++.+.. +++.+=-+.... ++.....|. +-|.++.|++....+
T Consensus 146 --------~~v~c~~W--~p~S~~vl~c~g-~h~~IKpL~~n~--k~i~WkAHD-----------GiiL~~~W~~~s~lI 201 (737)
T KOG1524|consen 146 --------ESIRCARW--APNSNSIVFCQG-GHISIKPLAANS--KIIRWRAHD-----------GLVLSLSWSTQSNII 201 (737)
T ss_pred --------ceeEEEEE--CCCCCceEEecC-CeEEEeeccccc--ceeEEeccC-----------cEEEEeecCccccce
Confidence 78999999 777776666643 455554444332 333444455 889999999999999
Q ss_pred ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
++|+. |-..++||.. ++.+..- ..|..+|++++|+|+ ..++.++-+++++ + ..
T Consensus 202 ~sgGE--D~kfKvWD~~----G~~Lf~S-~~~ey~ITSva~npd-~~~~v~S~nt~R~---~----------------~p 254 (737)
T KOG1524|consen 202 ASGGE--DFRFKIWDAQ----GANLFTS-AAEEYAITSVAFNPE-KDYLLWSYNTARF---S----------------SP 254 (737)
T ss_pred eecCC--ceeEEeeccc----CcccccC-Chhccceeeeeeccc-cceeeeeeeeeee---c----------------CC
Confidence 99999 9999999985 3343333 678999999999999 5666664444441 1 34
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEE
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRL 294 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 294 (432)
..+.|..++||+|| ..+++|...|.+.+
T Consensus 255 ~~GSifnlsWS~DG-TQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 255 RVGSIFNLSWSADG-TQATCGTSTGQLIV 282 (737)
T ss_pred CccceEEEEEcCCC-ceeeccccCceEEE
Confidence 45679999999999 99999998887644
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=6.7e-12 Score=118.40 Aligned_cols=201 Identities=9% Similarity=0.084 Sum_probs=131.9
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecc---cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
..|...+.+.+|+|||+.|+..+. +..|.+||+.+++. ..+..+.
T Consensus 198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~----------------------------~~l~~~~---- 245 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR----------------------------ELVGNFP---- 245 (435)
T ss_pred ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE----------------------------EEeecCC----
Confidence 356778999999999999988753 46899999987642 2333344
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEE-EEeCCCe--EEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFI-LSTNDKT--IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (432)
+.+...+| +|||+.|+ +.+.++. |.+||+.++....+... . .......|+|++
T Consensus 246 --------g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~---~-----------~~~~~~~~spDG 301 (435)
T PRK05137 246 --------GMTFAPRF--SPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDS---P-----------AIDTSPSYSPDG 301 (435)
T ss_pred --------CcccCcEE--CCCCCEEEEEEecCCCceEEEEECCCCceEEccCC---C-----------CccCceeEcCCC
Confidence 56678899 89998876 4455554 77778888775544322 1 345568999999
Q ss_pred cceecceeec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-C--CeEEEEeCCCCCceeeEee
Q 014005 183 AHGYHLEWTE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-D--LRINLWNLEISDQCFNIVD 257 (432)
Q Consensus 183 ~~~~~~~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d--~~i~lwd~~~~~~~~~~~~ 257 (432)
..++..+... ...+.++|+. .+...+.. .+...+....|+|+|+.++.. . . ..|.+||+. ++. .+.+
T Consensus 302 ~~i~f~s~~~g~~~Iy~~d~~---g~~~~~lt--~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~-~~~-~~~l- 373 (435)
T PRK05137 302 SQIVFESDRSGSPQLYVMNAD---GSNPRRIS--FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD-GSG-ERIL- 373 (435)
T ss_pred CEEEEEECCCCCCeEEEEECC---CCCeEEee--cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECC-CCc-eEec-
Confidence 9887655311 2367777765 33333322 234556778999999999865 3 3 367888876 332 2322
Q ss_pred cCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC------CeEEEEEccccc
Q 014005 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR------GFVRLVDMRQSA 301 (432)
Q Consensus 258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~iwd~~~~~ 301 (432)
. ....+....|+||| +.|+..+.+ ..+.++|+..+.
T Consensus 374 ------t-~~~~~~~p~~spDG-~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 374 ------T-SGFLVEGPTWAPNG-RVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred ------c-CCCCCCCCeECCCC-CEEEEEEccCCCCCcceEEEEECCCCc
Confidence 1 11236678999999 777665432 257788876544
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.49 E-value=2.6e-13 Score=118.69 Aligned_cols=190 Identities=9% Similarity=0.059 Sum_probs=152.8
Q ss_pred ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc
Q 014005 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (432)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 194 (432)
.-+.+.| +.+|++|+.|+..|+|..+|..++++..-.... ..|.++.|-.+..+++.+. ..
T Consensus 131 GPY~~~y--trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~--------------Etv~Dv~~LHneq~~AVAQ---K~ 191 (545)
T KOG1272|consen 131 GPYHLDY--TRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM--------------ETVRDVTFLHNEQFFAVAQ---KK 191 (545)
T ss_pred CCeeeee--cCCccEEEecCCccceeeeecccceeeeeeehh--------------hhhhhhhhhcchHHHHhhh---hc
Confidence 3567888 899999999999999999999998855433332 6788999988888888876 57
Q ss_pred eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEE
Q 014005 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (432)
Q Consensus 195 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 273 (432)
.+.|||-... .-.|++ ....+..+.|-|..-+|+++ ..|.++--|+. .++.+..+ ..-.+.+..+
T Consensus 192 y~yvYD~~Gt-ElHClk-----~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS-~GklVa~~-------~t~~G~~~vm 257 (545)
T KOG1272|consen 192 YVYVYDNNGT-ELHCLK-----RHIRVARLEFLPYHFLLVAASEAGFLKYQDVS-TGKLVASI-------RTGAGRTDVM 257 (545)
T ss_pred eEEEecCCCc-EEeehh-----hcCchhhhcccchhheeeecccCCceEEEeec-hhhhhHHH-------HccCCccchh
Confidence 8889987532 223333 23578899999998788888 89999999999 66665544 4556678889
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-eeCCeEEE
Q 014005 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNLKV 352 (432)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~~~i~i 352 (432)
+-+|-+ .++-+|...|+|.+|...+.+. +..+-.| .++|.++++.++|+|+|| |-|..++|
T Consensus 258 ~qNP~N-aVih~GhsnGtVSlWSP~skeP----LvKiLcH-------------~g~V~siAv~~~G~YMaTtG~Dr~~kI 319 (545)
T KOG1272|consen 258 KQNPYN-AVIHLGHSNGTVSLWSPNSKEP----LVKILCH-------------RGPVSSIAVDRGGRYMATTGLDRKVKI 319 (545)
T ss_pred hcCCcc-ceEEEcCCCceEEecCCCCcch----HHHHHhc-------------CCCcceEEECCCCcEEeecccccceeE
Confidence 999998 8999999999999999887665 4555565 799999999999999998 56699999
Q ss_pred Eec
Q 014005 353 FRY 355 (432)
Q Consensus 353 wd~ 355 (432)
||+
T Consensus 320 WDl 322 (545)
T KOG1272|consen 320 WDL 322 (545)
T ss_pred eee
Confidence 999
No 225
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.2e-12 Score=110.37 Aligned_cols=257 Identities=11% Similarity=0.101 Sum_probs=161.1
Q ss_pred CCCcEEEEEEcC--CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 31 DVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 31 h~~~V~~~~fsp--~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
++..++.+.|.. ....+.+|+.||+||+||++..... ....+.+|.
T Consensus 69 ~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-------------------------a~~~~~~~~------- 116 (376)
T KOG1188|consen 69 PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-------------------------ARISWTQQS------- 116 (376)
T ss_pred CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-------------------------hheeccCCC-------
Confidence 455677788866 4567899999999999999886543 112334443
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEe----CCCeEEEEEccCcceeeeee-cCCCCccccccccccccccccccCCCCC-
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILST----NDKTIKLWKVRDQKVKKIKE-MDHFPFVSSENTLLAEKNFMNEHNPPSF- 182 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 182 (432)
..+..+++- +-+++.+++|. .+-.|.+||++..+.. +.. ...|. ..|+.+.|+|+.
T Consensus 117 ----~~~f~~ld~--nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-l~~~~eSH~-----------DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 117 ----GTPFICLDL--NCKKNIIACGTELTRSDASVVLWDVRSEQQL-LRQLNESHN-----------DDVTQLRFHPSDP 178 (376)
T ss_pred ----CCcceEeec--cCcCCeEEeccccccCceEEEEEEeccccch-hhhhhhhcc-----------CcceeEEecCCCC
Confidence 134556665 44677777774 4678999999876521 111 12233 789999999974
Q ss_pred cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC--CEEEEEcCCeEEEEeCCCCCceeeEeecCC
Q 014005 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSADDLRINLWNLEISDQCFNIVDMKP 260 (432)
Q Consensus 183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~ 260 (432)
..+++|+. ||.+.++|+........+... -.+...|.++.|..++ +........+..+|+++ .+.+...++...
T Consensus 179 nlLlSGSv--DGLvnlfD~~~d~EeDaL~~v-iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele-~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSV--DGLVNLFDTKKDNEEDALLHV-INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE-DGSEETWLENPD 254 (376)
T ss_pred CeEEeecc--cceEEeeecCCCcchhhHHHh-hcccceeeeeeeecCCcceEEEEEccCceeEEEcc-CCChhhcccCcc
Confidence 57788888 999999999865333333332 3567789999999887 54444489999999998 343322111000
Q ss_pred CCc-----CCCCcceEEEEEcCCCCcEEEEEeC-CCeEEEEEcc---ccccccccceeecccccccCCccceeeeeccee
Q 014005 261 SNM-----DDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMR---QSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (432)
Q Consensus 261 ~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~ 331 (432)
... ......+-. +.+|.+...++.++. -|...++-+. ++. ..+....+++| |..-|.
T Consensus 255 ~~~~d~r~~~~~dY~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~-~~~~~a~l~g~------------~~eiVR 320 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS-LLTEPAILQGG------------HEEIVR 320 (376)
T ss_pred chhhhHHhhhhhhheee-cccCCCcceEEEeccccCceeEEEeeeccccc-ccCccccccCC------------cHHHHH
Confidence 000 000111111 123433355555554 4555555443 222 22334566663 367788
Q ss_pred EEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 332 DIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 332 ~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
++.|...+.++.||+. |.+.+|..
T Consensus 321 ~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 321 DILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred HHhhhcccceeeccCCCceEEEEec
Confidence 8999888889999754 99999985
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=5.4e-12 Score=118.87 Aligned_cols=218 Identities=12% Similarity=0.119 Sum_probs=137.6
Q ss_pred ccCCCcEEEEEEcCCCCEEEEeccc---ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++.. .+....
T Consensus 200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~----------------------------~l~~~~---- 247 (433)
T PRK04922 200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE----------------------------LVASFR---- 247 (433)
T ss_pred ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE----------------------------EeccCC----
Confidence 3456689999999999999887643 46999999776421 222222
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEE-EeCCC--eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFIL-STNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (432)
......+| +|||+.++. .+.+| .|.+||+.+++...+... . .......|+|++
T Consensus 248 --------g~~~~~~~--SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~---~-----------~~~~~~~~spDG 303 (433)
T PRK04922 248 --------GINGAPSF--SPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNH---F-----------GIDTEPTWAPDG 303 (433)
T ss_pred --------CCccCceE--CCCCCEEEEEEeCCCCceEEEEECCCCCeEECccC---C-----------CCccceEECCCC
Confidence 34457889 899987764 45555 699999988875544322 1 234567899999
Q ss_pred cceecceeeccc--eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-CC--eEEEEeCCCCCceeeEe
Q 014005 183 AHGYHLEWTENM--ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DL--RINLWNLEISDQCFNIV 256 (432)
Q Consensus 183 ~~~~~~~~~~~~--~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~--~i~lwd~~~~~~~~~~~ 256 (432)
..++..+.. ++ .+.++++. .+...+.. .+.......+|+|+|+.++.. . ++ .|.+||+. ++... .+
T Consensus 304 ~~l~f~sd~-~g~~~iy~~dl~---~g~~~~lt--~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~-~g~~~-~L 375 (433)
T PRK04922 304 KSIYFTSDR-GGRPQIYRVAAS---GGSAERLT--FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS-TGSVR-TL 375 (433)
T ss_pred CEEEEEECC-CCCceEEEEECC---CCCeEEee--cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECC-CCCeE-EC
Confidence 988766531 33 35555554 23332222 223345578999999999865 3 32 68999997 44432 22
Q ss_pred ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC---CeEEEEEccccccccccceeecccccccCCccceeeeecceeEE
Q 014005 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (432)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~ 333 (432)
. +........|+|+| +.++..+.+ +.+.++++..+. .+.+..+ .+.+...
T Consensus 376 -------t-~~~~~~~p~~spdG-~~i~~~s~~~g~~~L~~~~~~g~~-----~~~l~~~-------------~g~~~~p 428 (433)
T PRK04922 376 -------T-PGSLDESPSFAPNG-SMVLYATREGGRGVLAAVSTDGRV-----RQRLVSA-------------DGEVREP 428 (433)
T ss_pred -------C-CCCCCCCceECCCC-CEEEEEEecCCceEEEEEECCCCc-----eEEcccC-------------CCCCCCC
Confidence 1 11234467899999 776666543 357788875433 2444432 3456677
Q ss_pred EEcC
Q 014005 334 KFAN 337 (432)
Q Consensus 334 ~~s~ 337 (432)
+|+|
T Consensus 429 ~wsp 432 (433)
T PRK04922 429 AWSP 432 (433)
T ss_pred ccCC
Confidence 7876
No 227
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=8.8e-13 Score=116.12 Aligned_cols=266 Identities=13% Similarity=0.126 Sum_probs=168.9
Q ss_pred eeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccc
Q 014005 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (432)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 173 (432)
...+..|. +.|+.+.| +..|..+++|+.|..|.+||...++.+. ....+|. ..|
T Consensus 135 ~~kL~~H~------------GcVntV~F--N~~Gd~l~SgSDD~~vv~WdW~~~~~~l-~f~SGH~-----------~Nv 188 (559)
T KOG1334|consen 135 QKKLNKHK------------GCVNTVHF--NQRGDVLASGSDDLQVVVWDWVSGSPKL-SFESGHC-----------NNV 188 (559)
T ss_pred hhcccCCC------------Cccceeee--cccCceeeccCccceEEeehhhccCccc-ccccccc-----------cch
Confidence 34566777 99999999 8899999999999999999998776322 1222333 455
Q ss_pred ccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCE-EEEE-cCCeEEEEeCCCCCc
Q 014005 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQ 251 (432)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~-~d~~i~lwd~~~~~~ 251 (432)
....|-|........+...||++++-.+.........+.+ ..|.+.|..++.-|+..+ |.++ .|+.+.-+|++ .+.
T Consensus 189 fQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl-~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr-~~~ 266 (559)
T KOG1334|consen 189 FQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL-APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR-QDV 266 (559)
T ss_pred hhhhccCCCCCcCceeccccCceeeeeeccccceecceec-ccccCccceeeecCCCCCcccccccccceeeeeec-cCC
Confidence 5555666543333333333899998876643222222333 679999999999998665 4455 99999999998 444
Q ss_pred eeeEeecCCCCcCCCCc---ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccc--cccceeecccccccCCccceeee
Q 014005 252 CFNIVDMKPSNMDDLTE---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC--DHSARILRDAAESHGSKSFFTEI 326 (432)
Q Consensus 252 ~~~~~~~~~~~~~~~~~---~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~h~~~~~~~~~~~~~ 326 (432)
....+.. ...+.. ....++.+|.+.+.+++++.|..+++||.+.-... ...+..|..|.. ....
T Consensus 267 pa~~~~c----r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl-------~~d~ 335 (559)
T KOG1334|consen 267 PAEKFVC----READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL-------VEDD 335 (559)
T ss_pred ccceeee----eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc-------cccC
Confidence 4333311 122222 56789999998779999999999999998853321 001233332210 0011
Q ss_pred ecceeEEEEcCC-CCEEEEeeCCeEEEEec------Cc---------cee-EeecceeeeehhhhhcccccccccceeeE
Q 014005 327 IASISDIKFAND-GQHLLSRDYMNLKVFRY------EP---------VMT-LSFCGIYVWILRQLQHSRFMSIYALSCVI 389 (432)
Q Consensus 327 ~~~v~~~~~s~d-g~~l~s~~~~~i~iwd~------~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (432)
.-.|++++++.+ +.+|++-.|-.|+++.- .+ ++. |+.|... .+.+-. -|+....-
T Consensus 336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-------~TVKgV-NFfGPrsE 407 (559)
T KOG1334|consen 336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-------RTVKGV-NFFGPRSE 407 (559)
T ss_pred cccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccc-------ccccee-eeccCccc
Confidence 357999999976 56677767788999966 11 111 3333320 000111 12222333
Q ss_pred EEEeecccceeeeeccC
Q 014005 390 YIITTLYLINLSALSAG 406 (432)
Q Consensus 390 ~~~~g~~~~~i~~~~~~ 406 (432)
||++||..|.|.+|+..
T Consensus 408 yVvSGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 408 YVVSGSDCGHIFIWDKK 424 (559)
T ss_pred eEEecCccceEEEEecc
Confidence 79999999999999954
No 228
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=2.5e-11 Score=103.32 Aligned_cols=261 Identities=11% Similarity=0.092 Sum_probs=162.8
Q ss_pred CCcEEEEEEcCCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 32 VDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 32 ~~~V~~~~fsp~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
...|+|++|-|.+ +-|+.|+.. -|.||..+....... .++-...+. ..+....||
T Consensus 140 QrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r---~~~~~s~~~----------~qvl~~pgh---------- 195 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANR---NIRMMSTHH----------LQVLQDPGH---------- 195 (445)
T ss_pred hcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccc---ccccccccc----------hhheeCCCC----------
Confidence 4479999999965 567777764 699998765332100 000000000 001122233
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeC-CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
..|++++| .+||..+++++. |..|.|||..++....+.... . +.+.-+.|+|++.++...+
T Consensus 196 ---~pVtsmqw--n~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g--l-----------gg~slLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 196 ---NPVTSMQW--NEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG--L-----------GGFSLLKWSPDGDVLFAAT 257 (445)
T ss_pred ---ceeeEEEE--cCCCCEEeecccCcceEEEEcCCCCCcccccccC--C-----------CceeeEEEcCCCCEEEEec
Confidence 57999999 899999999864 678999999998865554222 1 6788899999999999999
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceee------------Eee
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFN------------IVD 257 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~------------~~~ 257 (432)
. |+..++|+... ...+.+-. ...+.|...+|+|.|++|+.+-.+.-++|.+...+++.. +.+
T Consensus 258 ~--davfrlw~e~q--~wt~erw~--lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 258 C--DAVFRLWQENQ--SWTKERWI--LGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred c--cceeeeehhcc--cceeccee--ccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeecc
Confidence 8 99999997653 23333332 234489999999999999877445555565542222211 111
Q ss_pred cCCCCcCC----CCcceEEEEEcCCCCcEEEEEeCCC--------eEEEEEccccccccccceeecccccccCCccceee
Q 014005 258 MKPSNMDD----LTEVITSAEFHPIYCNLLAYSSSRG--------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (432)
Q Consensus 258 ~~~~~~~~----~~~~v~~~~~~p~~~~~l~~~~~dg--------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 325 (432)
+...+... -.+.+.+++|+|.| .+||+.-..+ .|.+||.+..... ...+.+- .
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~sp~v---els~cg~-i---------- 396 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRKSPPV---ELSYCGM-I---------- 396 (445)
T ss_pred chhhhhhcCcccccCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhcccccCce---EEEeccc-c----------
Confidence 11111111 24678899999999 8998866444 3677887754321 0111110 0
Q ss_pred eecceeEEEEcC---CCCEEEEe-eCCeEEEEec
Q 014005 326 IIASISDIKFAN---DGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 326 ~~~~v~~~~~s~---dg~~l~s~-~~~~i~iwd~ 355 (432)
.......++|+| +|++|..+ +.|.+.-|++
T Consensus 397 ~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 397 GGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred cCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 012244566666 57777777 5588888887
No 229
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.6e-11 Score=115.28 Aligned_cols=221 Identities=14% Similarity=0.151 Sum_probs=136.0
Q ss_pred ccCCCcEEEEEEcCCCCEEEEeccc---ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
..+.+.+.+.+|+|+|+.|+..+.+ ..|.+||+.+++.. .+....
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~----------------------------~l~~~~---- 239 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR----------------------------VVANFK---- 239 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE----------------------------EeecCC----
Confidence 4567789999999999999877643 35999999876521 222222
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEE-EeCCCeEEEEEc--cCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s-~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (432)
..+...+| +|||+.++. .+.++...+|.+ .++....+.. +. +......|+|++
T Consensus 240 --------g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~---~~-----------~~~~~~~wSpDG 295 (427)
T PRK02889 240 --------GSNSAPAW--SPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQ---SS-----------GIDTEPFFSPDG 295 (427)
T ss_pred --------CCccceEE--CCCCCEEEEEEccCCCceEEEEECCCCCcEECCC---CC-----------CCCcCeEEcCCC
Confidence 44567899 899998864 567777666654 4444333322 11 334567899999
Q ss_pred cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCC---eEEEEeCCCCCceeeEeec
Q 014005 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL---RINLWNLEISDQCFNIVDM 258 (432)
Q Consensus 183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~---~i~lwd~~~~~~~~~~~~~ 258 (432)
..++..+. .++...+|.+... .+...+.. .........+|+|+|++++.. .++ .|.+||+. ++... .+
T Consensus 296 ~~l~f~s~-~~g~~~Iy~~~~~-~g~~~~lt--~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~-~g~~~-~l-- 367 (427)
T PRK02889 296 RSIYFTSD-RGGAPQIYRMPAS-GGAAQRVT--FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLA-TGQVT-AL-- 367 (427)
T ss_pred CEEEEEec-CCCCcEEEEEECC-CCceEEEe--cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECC-CCCeE-Ec--
Confidence 98876542 1455667765422 22222222 122334467899999999866 433 69999998 44432 22
Q ss_pred CCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC---eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEE
Q 014005 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (432)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~ 335 (432)
.. ........|+|++ +.|+.++.++ .+.+.++. +.. .+.+..+ .+.+...+|
T Consensus 368 -----t~-~~~~~~p~~spdg-~~l~~~~~~~g~~~l~~~~~~-g~~----~~~l~~~-------------~g~~~~p~w 422 (427)
T PRK02889 368 -----TD-TTRDESPSFAPNG-RYILYATQQGGRSVLAAVSSD-GRI----KQRLSVQ-------------GGDVREPSW 422 (427)
T ss_pred -----cC-CCCccCceECCCC-CEEEEEEecCCCEEEEEEECC-CCc----eEEeecC-------------CCCCCCCcc
Confidence 11 1224578999999 7777666443 35555653 433 3444432 356677788
Q ss_pred cCC
Q 014005 336 AND 338 (432)
Q Consensus 336 s~d 338 (432)
+|-
T Consensus 423 sp~ 425 (427)
T PRK02889 423 GPF 425 (427)
T ss_pred CCC
Confidence 873
No 230
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.45 E-value=2e-12 Score=115.32 Aligned_cols=176 Identities=16% Similarity=0.260 Sum_probs=103.2
Q ss_pred hhhhhhhcCCCCCccccCCCcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcc
Q 014005 14 WKCSQAFGERNPDEELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92 (432)
Q Consensus 14 w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 92 (432)
.+++..|. ...+..+..|+|+.|-|.++ .++++-.+|.+.++|.+..-..+ ..+...++. |..-
T Consensus 205 ~~~sklfn----e~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t--~p~~~~~k~---------~~~f 269 (636)
T KOG2394|consen 205 FEVSKLFN----EERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGAT--APSYQALKD---------GDQF 269 (636)
T ss_pred hHHHHhhh----hcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCC--CCcccccCC---------CCee
Confidence 45555555 22344568999999998654 44556678999999873211100 000000000 0000
Q ss_pred eeeeeecCCcccccc--chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccc
Q 014005 93 YKTEFQSHEPEFDYL--KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (432)
Q Consensus 93 ~~~~~~~h~~~~~~~--~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (432)
.+.+.+.+... ..+ |.+. +..|+..+| +|||++||+.+.||.++|+|..+.++.
T Consensus 270 ~i~t~ksk~~r-NPv~~w~~~-~g~in~f~F--S~DG~~LA~VSqDGfLRvF~fdt~eLl-------------------- 325 (636)
T KOG2394|consen 270 AILTSKSKKTR-NPVARWHIG-EGSINEFAF--SPDGKYLATVSQDGFLRIFDFDTQELL-------------------- 325 (636)
T ss_pred EEeeeeccccC-CccceeEec-cccccceeE--cCCCceEEEEecCceEEEeeccHHHHH--------------------
Confidence 00000111000 000 0000 145666666 667777777777777777776654421
Q ss_pred cccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCC
Q 014005 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 249 (432)
Q Consensus 171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~ 249 (432)
..+ +.--+...|++|+|||+++++| .|.-|.+|.+. .
T Consensus 326 ----------------------------------------g~m-kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~-e 363 (636)
T KOG2394|consen 326 ----------------------------------------GVM-KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE-E 363 (636)
T ss_pred ----------------------------------------HHH-HhhccceEEEEEcCCccEEEecCCcceEEEEEec-c
Confidence 111 3345678999999999999999 99999999998 5
Q ss_pred CceeeEeecCCCCcCCCCcceEEEEEcC
Q 014005 250 DQCFNIVDMKPSNMDDLTEVITSAEFHP 277 (432)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p 277 (432)
.+.+..- ++|.++|+.++|+|
T Consensus 364 rRVVARG-------qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 364 RRVVARG-------QGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEec-------cccccceeeEeecc
Confidence 5555433 89999999999983
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1.4e-11 Score=105.91 Aligned_cols=203 Identities=12% Similarity=0.121 Sum_probs=142.9
Q ss_pred CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEc
Q 014005 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA 124 (432)
Q Consensus 45 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s 124 (432)
..|++|-.+|.+.+|..+.+... ......+..+ ..+..+.=+ .
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~h-----------------------ss~l~~la~g-------------~g~~~~r~~-~ 158 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLH-----------------------SSKLIKLATG-------------PGLYDVRQT-D 158 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccc-----------------------cccceeeecC-------------CceeeeccC-C
Confidence 35778888999999998854321 0011222222 234445442 1
Q ss_pred CCCCEEEEEeCC--CeEEEEEccCcceeeeeec-CCCCccccccccccccccccccCCCC--CcceecceeeccceEEEE
Q 014005 125 PNGSMFILSTND--KTIKLWKVRDQKVKKIKEM-DHFPFVSSENTLLAEKNFMNEHNPPS--FAHGYHLEWTENMATKIA 199 (432)
Q Consensus 125 ~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~v~i~ 199 (432)
.+...+++|+.. +.+++||++..+ ++..- +...+- ....-.-.+.++.|-+. ...+++++. -+.+++|
T Consensus 159 ~~p~Iva~GGke~~n~lkiwdle~~~--qiw~aKNvpnD~---L~LrVPvW~tdi~Fl~g~~~~~fat~T~--~hqvR~Y 231 (412)
T KOG3881|consen 159 TDPYIVATGGKENINELKIWDLEQSK--QIWSAKNVPNDR---LGLRVPVWITDIRFLEGSPNYKFATITR--YHQVRLY 231 (412)
T ss_pred CCCceEecCchhcccceeeeecccce--eeeeccCCCCcc---ccceeeeeeccceecCCCCCceEEEEec--ceeEEEe
Confidence 233456778888 889999998773 22221 111100 00001134566777776 677777777 8999999
Q ss_pred eecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCC
Q 014005 200 NVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 278 (432)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 278 (432)
|.+. ..+++..+ .-....|+++...|.++++.+| .-+.+..||++ .+..... .+.+..+.|+++..+|.
T Consensus 232 Dt~~--qRRPV~~f-d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r-~~kl~g~------~~kg~tGsirsih~hp~ 301 (412)
T KOG3881|consen 232 DTRH--QRRPVAQF-DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR-GGKLLGC------GLKGITGSIRSIHCHPT 301 (412)
T ss_pred cCcc--cCcceeEe-ccccCcceeeeecCCCcEEEEecccchhheeccc-Cceeecc------ccCCccCCcceEEEcCC
Confidence 9984 56677777 6668899999999999999999 99999999999 4444332 23788899999999999
Q ss_pred CCcEEEEEeCCCeEEEEEcccccc
Q 014005 279 YCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 279 ~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
+ +++|+++-|..+||+|+.+.++
T Consensus 302 ~-~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 302 H-PVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred C-ceEEeeccceeEEEeecccchh
Confidence 9 9999999999999999998665
No 232
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.43 E-value=9.7e-10 Score=100.30 Aligned_cols=269 Identities=10% Similarity=0.097 Sum_probs=161.0
Q ss_pred CCcEEEEEEcCCCCEEEEecc----cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 32 VDIVSAIEFDKTGDYLAVGDR----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
.....-++++|++++|.++.. ++.|..|++..... ....+.......
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-----------------------~L~~~~~~~~~g------ 86 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-----------------------TLTLLNSVPSGG------ 86 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-----------------------EEEEEEEEEESS------
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-----------------------eeEEeeeeccCC------
Confidence 334566889999999887765 57899999887410 011222222111
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEe-CCCeEEEEEccC-cceeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 185 (432)
.....+++ ++++++++++. .+|.|.++++.. +.+........+.................+.++|+++++
T Consensus 87 ------~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v 158 (345)
T PF10282_consen 87 ------SSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV 158 (345)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred ------CCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEE
Confidence 34456788 89999999986 489999999976 443332111100000000000011334578899999988
Q ss_pred ecceeeccceEEEEeecccc-cceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeE---eecC
Q 014005 186 YHLEWTENMATKIANVGNSV-HARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNI---VDMK 259 (432)
Q Consensus 186 ~~~~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~---~~~~ 259 (432)
+.... ....|.+|++.... .-.....+........+.++|+|+++++.+. .++.|.++++......+.. +...
T Consensus 159 ~v~dl-G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 159 YVPDL-GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL 237 (345)
T ss_dssp EEEET-TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred EEEec-CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec
Confidence 77654 24588999987432 1222233334566788999999999988765 6999999998832222222 2122
Q ss_pred CCCcCCCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEcc--ccccccccceeecccccccCCccceeeeecceeEEEEc
Q 014005 260 PSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (432)
Q Consensus 260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s 336 (432)
+....+ ......++++||+ ++|.++. ..+.|.+|++. ++++. .+..+... ......++++
T Consensus 238 ~~~~~~-~~~~~~i~ispdg-~~lyvsnr~~~sI~vf~~d~~~g~l~--~~~~~~~~-------------G~~Pr~~~~s 300 (345)
T PF10282_consen 238 PEGFTG-ENAPAEIAISPDG-RFLYVSNRGSNSISVFDLDPATGTLT--LVQTVPTG-------------GKFPRHFAFS 300 (345)
T ss_dssp ETTSCS-SSSEEEEEE-TTS-SEEEEEECTTTEEEEEEECTTTTTEE--EEEEEEES-------------SSSEEEEEE-
T ss_pred cccccc-cCCceeEEEecCC-CEEEEEeccCCEEEEEEEecCCCceE--EEEEEeCC-------------CCCccEEEEe
Confidence 221111 2267899999999 6665554 67789999994 33321 12222210 2347899999
Q ss_pred CCCCEEEEee-C-CeEEEEec
Q 014005 337 NDGQHLLSRD-Y-MNLKVFRY 355 (432)
Q Consensus 337 ~dg~~l~s~~-~-~~i~iwd~ 355 (432)
|+|++|+++. + +.|.+|++
T Consensus 301 ~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 301 PDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEecCCCeEEEEEE
Confidence 9999999863 3 89999988
No 233
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=8e-13 Score=118.03 Aligned_cols=180 Identities=15% Similarity=0.203 Sum_probs=128.9
Q ss_pred eeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccc
Q 014005 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (432)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 174 (432)
+.+.||+ +.|++++| +.+|.+|++|+.|-.+.|||....++.
T Consensus 44 ~eL~GH~------------GCVN~LeW--n~dG~lL~SGSDD~r~ivWd~~~~Kll------------------------ 85 (758)
T KOG1310|consen 44 AELTGHT------------GCVNCLEW--NADGELLASGSDDTRLIVWDPFEYKLL------------------------ 85 (758)
T ss_pred hhhcccc------------ceecceee--cCCCCEEeecCCcceEEeecchhccee------------------------
Confidence 5788999 99999999 899999999999999999998754422
Q ss_pred cccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCCCCCc
Q 014005 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQ 251 (432)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~-~d~~i~lwd~~~~~~ 251 (432)
..+..+|...|.++.|-| +.+++++| .|..|+++|+.....
T Consensus 86 ------------------------------------hsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~ 129 (758)
T KOG1310|consen 86 ------------------------------------HSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKE 129 (758)
T ss_pred ------------------------------------eeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccc
Confidence 111268999999999998 46678888 999999999983211
Q ss_pred eee--EeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecc
Q 014005 252 CFN--IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (432)
Q Consensus 252 ~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~ 329 (432)
.-. -......-...|...|..++-.|++++.+-++++||+|+-+|+|....|.. ....|. ....+...--.
T Consensus 130 ~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p---~~~~~~----~l~ny~~~lie 202 (758)
T KOG1310|consen 130 GGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP---DEDCPS----ILVNYNPQLIE 202 (758)
T ss_pred cccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc---cccccH----HHHHhchhhhe
Confidence 100 000011133678899999999999999999999999999999997544421 000000 00000001235
Q ss_pred eeEEEEcCCC-CEEEEe-eCCeEEEEec
Q 014005 330 ISDIKFANDG-QHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 330 v~~~~~s~dg-~~l~s~-~~~~i~iwd~ 355 (432)
..++..+|.. .|||.| ++-..++||.
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhh
Confidence 6789999975 567776 5689999996
No 234
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=1.4e-09 Score=93.34 Aligned_cols=255 Identities=11% Similarity=0.078 Sum_probs=159.7
Q ss_pred cceeEEEEEEcCCCCEEEEEeC---CCeEEEEEccC--cceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~---d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
...+-|+| +++++.|.++-. +|.|..|.+.. |.+..+....... .+-.-++.++++.++.++
T Consensus 40 ~nptyl~~--~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g-----------~~p~yvsvd~~g~~vf~A 106 (346)
T COG2706 40 GNPTYLAV--NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPG-----------SPPCYVSVDEDGRFVFVA 106 (346)
T ss_pred CCCceEEE--CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCC-----------CCCeEEEECCCCCEEEEE
Confidence 67788999 889988888743 57888888764 5555443322222 334678899999999888
Q ss_pred eeeccceEEEEeecccccc-eeeEEeecCCCCC----------eeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeE
Q 014005 189 EWTENMATKIANVGNSVHA-RCQKVYPHAHDFN----------INSISNNSDCETFVSA--DDLRINLWNLEISDQCFNI 255 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~-~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~ 255 (432)
... .|.|.++.++....- ..+..+ .|.+. +....+.|+++++++. .-..|.+|++. .+.....
T Consensus 107 nY~-~g~v~v~p~~~dG~l~~~v~~~--~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~-dg~L~~~ 182 (346)
T COG2706 107 NYH-SGSVSVYPLQADGSLQPVVQVV--KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD-DGKLTPA 182 (346)
T ss_pred Ecc-CceEEEEEcccCCccccceeee--ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcc-cCccccc
Confidence 763 478889888653222 222332 34444 8889999999999987 57789999998 4432211
Q ss_pred eecCCCCcCCCCcceEEEEEcCCCCcEEEEE-eCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEE
Q 014005 256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 334 (432)
Q Consensus 256 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~ 334 (432)
.+..+ ......+.|.|+|++ ++..+. --+++|.+|......-. ...++.+...|.. |.+ ..+..++.
T Consensus 183 ---~~~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~---~~~lQ~i~tlP~d---F~g-~~~~aaIh 250 (346)
T COG2706 183 ---DPAEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGK---FEELQTIDTLPED---FTG-TNWAAAIH 250 (346)
T ss_pred ---ccccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCce---EEEeeeeccCccc---cCC-CCceeEEE
Confidence 11111 334567899999999 665544 47899999998863111 2333332111110 111 46788999
Q ss_pred EcCCCCEEEEeeC--CeEEEEec----CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 335 FANDGQHLLSRDY--MNLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 335 ~s~dg~~l~s~~~--~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
.++||++|.+++- ..|-+|.+ ..+..+......--.+|.+ .+..+.-++++.+....+|.+|.
T Consensus 251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F-------~i~~~g~~Liaa~q~sd~i~vf~ 319 (346)
T COG2706 251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDF-------NINPSGRFLIAANQKSDNITVFE 319 (346)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccc-------eeCCCCCEEEEEccCCCcEEEEE
Confidence 9999999998643 78999988 2222222211100000000 11223445688888888999998
No 235
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.41 E-value=6.8e-11 Score=107.03 Aligned_cols=132 Identities=14% Similarity=0.173 Sum_probs=105.7
Q ss_pred cceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005 193 NMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (432)
.|.|.+|+.. .++....+. ..|.+.++++.++.+-..+.++ .|+.+..|+.. ....+.++ ......+
T Consensus 79 ~g~v~~ys~~---~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~~-------~~~~~~~ 147 (541)
T KOG4547|consen 79 QGSVLLYSVA---GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRIW-------KEQKPLV 147 (541)
T ss_pred CccEEEEEec---CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeeee-------ccCCCcc
Confidence 4455555554 333333332 5789999999999998889988 99999999999 67777776 6677779
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC-----CCEEEEe
Q 014005 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----GQHLLSR 345 (432)
Q Consensus 271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d-----g~~l~s~ 345 (432)
.+++.+||+ .++++|+ +.|++||+.+.+. +..|.+| .++|.++.|-.+ |.|+.++
T Consensus 148 ~sl~is~D~-~~l~~as--~~ik~~~~~~kev----v~~ftgh-------------~s~v~t~~f~~~~~g~~G~~vLss 207 (541)
T KOG4547|consen 148 SSLCISPDG-KILLTAS--RQIKVLDIETKEV----VITFTGH-------------GSPVRTLSFTTLIDGIIGKYVLSS 207 (541)
T ss_pred ceEEEcCCC-CEEEecc--ceEEEEEccCceE----EEEecCC-------------CcceEEEEEEEeccccccceeeec
Confidence 999999998 8898876 4699999999887 7999998 889999999887 8888885
Q ss_pred eC--CeEEEEec
Q 014005 346 DY--MNLKVFRY 355 (432)
Q Consensus 346 ~~--~~i~iwd~ 355 (432)
.. .-+.+|-+
T Consensus 208 a~~~r~i~~w~v 219 (541)
T KOG4547|consen 208 AAAERGITVWVV 219 (541)
T ss_pred cccccceeEEEE
Confidence 33 77888877
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.41 E-value=1.8e-11 Score=101.20 Aligned_cols=154 Identities=13% Similarity=0.214 Sum_probs=104.8
Q ss_pred eEEEEEEcCCCCEEEEEeC----------CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 117 NRVRWCAAPNGSMFILSTN----------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 117 ~~l~~~~s~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
..+.| +++|++|+.-.. -+...+|.++.... ....+.. ...+.|.+++|+|++..++
T Consensus 9 ~~~~W--~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l----------~~~~~I~~~~WsP~g~~fa 75 (194)
T PF08662_consen 9 AKLHW--QPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIEL----------KKEGPIHDVAWSPNGNEFA 75 (194)
T ss_pred EEEEe--cccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeec----------cCCCceEEEEECcCCCEEE
Confidence 35778 888988766433 13455565533221 1111111 1135699999999998865
Q ss_pred cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c---CCeEEEEeCCCCCceeeEeecCCCC
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSN 262 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~---d~~i~lwd~~~~~~~~~~~~~~~~~ 262 (432)
......+..+.+||++ .+.+..+ +...++.+.|+|+|++++++ . .|.+.+||.+ ..+.+...
T Consensus 76 vi~g~~~~~v~lyd~~----~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~-~~~~i~~~------ 141 (194)
T PF08662_consen 76 VIYGSMPAKVTLYDVK----GKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR-KKKKISTF------ 141 (194)
T ss_pred EEEccCCcccEEEcCc----ccEeEee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC-CCEEeecc------
Confidence 5433226799999996 3444444 34678899999999999976 2 4679999999 55555532
Q ss_pred cCCCCcceEEEEEcCCCCcEEEEEeC------CCeEEEEEcccccc
Q 014005 263 MDDLTEVITSAEFHPIYCNLLAYSSS------RGFVRLVDMRQSAL 302 (432)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~~l~~~~~------dg~i~iwd~~~~~~ 302 (432)
.| ..++.++|+|+| ++|+++.. |+.++||+.. |++
T Consensus 142 --~~-~~~t~~~WsPdG-r~~~ta~t~~r~~~dng~~Iw~~~-G~~ 182 (194)
T PF08662_consen 142 --EH-SDATDVEWSPDG-RYLATATTSPRLRVDNGFKIWSFQ-GRL 182 (194)
T ss_pred --cc-CcEEEEEEcCCC-CEEEEEEeccceeccccEEEEEec-CeE
Confidence 23 347899999999 89988864 7889999986 443
No 237
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.39 E-value=3.7e-10 Score=102.97 Aligned_cols=254 Identities=13% Similarity=0.156 Sum_probs=144.0
Q ss_pred EEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcce
Q 014005 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (432)
Q Consensus 37 ~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v 116 (432)
.+.|+|||+++.+++.||.|.++|+.+.+.+ .+++.- ...
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v---------------------------~~i~~G-------------~~~ 80 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVV---------------------------ATIKVG-------------GNP 80 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSSEE---------------------------EEEE-S-------------SEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcccEE---------------------------EEEecC-------------CCc
Confidence 4679999999999999999999999987643 444433 345
Q ss_pred eEEEEEEcCCCCEEEEEe-CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc-ceecceeeccc
Q 014005 117 NRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHLEWTENM 194 (432)
Q Consensus 117 ~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~ 194 (432)
.++++ ++||++++++. ..+.+.++|.++.+..+.......+ ....+..+..+..++... +++.... .+
T Consensus 81 ~~i~~--s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~------~~~~~~Rv~aIv~s~~~~~fVv~lkd--~~ 150 (369)
T PF02239_consen 81 RGIAV--SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP------VDGPESRVAAIVASPGRPEFVVNLKD--TG 150 (369)
T ss_dssp EEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-------TTTS---EEEEEE-SSSSEEEEEETT--TT
T ss_pred ceEEE--cCCCCEEEEEecCCCceeEeccccccceeeccccccc------ccccCCCceeEEecCCCCEEEEEEcc--CC
Confidence 77899 89999998875 6899999999887644332211100 000123455555556655 4444333 45
Q ss_pred eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCC-----------
Q 014005 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPS----------- 261 (432)
Q Consensus 195 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~----------- 261 (432)
.+-+.|.... .....+.+ ..........|+|++++++++ .++.+-++|.+ ++.....++....
T Consensus 151 ~I~vVdy~d~-~~~~~~~i--~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~-~~k~v~~i~~g~~p~~~~~~~~ph 226 (369)
T PF02239_consen 151 EIWVVDYSDP-KNLKVTTI--KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK-TGKLVALIDTGKKPHPGPGANFPH 226 (369)
T ss_dssp EEEEEETTTS-SCEEEEEE--E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT-TTEEEEEEE-SSSBEETTEEEEEE
T ss_pred eEEEEEeccc-cccceeee--cccccccccccCcccceeeecccccceeEEEeec-cceEEEEeeccccccccccccccC
Confidence 6666676532 11122222 344567789999999998776 67899999987 3433332221100
Q ss_pred -------------------------C-c-----------CCCCcceEEEEEcCCCCcEEEEE----eCCCeEEEEEcccc
Q 014005 262 -------------------------N-M-----------DDLTEVITSAEFHPIYCNLLAYS----SSRGFVRLVDMRQS 300 (432)
Q Consensus 262 -------------------------~-~-----------~~~~~~v~~~~~~p~~~~~l~~~----~~dg~i~iwd~~~~ 300 (432)
. . ...... .-+..||++ +++.+. ...+.|.++|.++.
T Consensus 227 p~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s-~~vwvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 227 PGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDS-RYVWVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp TTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT--SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred CCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCC-ccEEeeccCCCCCceEEEEECcCc
Confidence 0 0 000111 345678998 777777 45589999999987
Q ss_pred ccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe--eC-CeEEEEec---CcceeEe
Q 014005 301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--DY-MNLKVFRY---EPVMTLS 362 (432)
Q Consensus 301 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~--~~-~~i~iwd~---~~~~~~~ 362 (432)
+. ...+...+ ...+..+.|++||+++..+ +. +.|.+||. +.++.+.
T Consensus 305 ~~----~~~i~~~~------------~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 305 KV----VKTITPGP------------GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EE----EE-HHHHH------------T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ce----eEEEeccC------------CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 54 35554310 1248899999999977553 33 49999999 4444444
No 238
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.39 E-value=1.5e-10 Score=97.48 Aligned_cols=244 Identities=13% Similarity=0.131 Sum_probs=155.4
Q ss_pred CcEEEEEEcCCCCEEE-EecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 33 DIVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
+.|.-+.|..+..+++ ....|+.|.+|++...+ ....+...+
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe---------------------------w~ckIdeg~---------- 91 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE---------------------------WYCKIDEGQ---------- 91 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecce---------------------------eEEEeccCC----------
Confidence 4577788988877654 45678899999997754 112344444
Q ss_pred hhcceeEEEEEEcCCCCE-EEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 112 IEEKINRVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
..+..++| +|||+. |.++..|-.|.+|.+.+.+...+.-.. ..+..++|++++++.+..+.
T Consensus 92 --agls~~~W--SPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK--------------~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 92 --AGLSSISW--SPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK--------------TNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred --CcceeeeE--CCCcceEeeeecceeEEEEEEeccceeEEecccc--------------cCceeEEECCCCceeeeeec
Confidence 78999999 899955 556677899999999887644332111 34466677777766554431
Q ss_pred ---------------------------------ec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE
Q 014005 191 ---------------------------------TE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA 236 (432)
Q Consensus 191 ---------------------------------~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 236 (432)
.+ +..+.+||--.. -.+..+ .-.-.+..++|+|-++++++|
T Consensus 154 rDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le---ykv~aY--e~~lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 154 RDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE---YKVYAY--ERGLGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred ccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh---heeeee--eeccceeEEEeccccceEEee
Confidence 11 335666664311 111111 223468899999999999999
Q ss_pred -cCCeEEEEeCC---------------CC------------------------------------------CceeeEeec
Q 014005 237 -DDLRINLWNLE---------------IS------------------------------------------DQCFNIVDM 258 (432)
Q Consensus 237 -~d~~i~lwd~~---------------~~------------------------------------------~~~~~~~~~ 258 (432)
.|+.+++.+-- .. ....+.-..
T Consensus 229 syD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~l 308 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKL 308 (447)
T ss_pred ccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecc
Confidence 99988875420 00 000000001
Q ss_pred CC-CCcCCCCcceEEEEEcCCCCcEEEEEeC--CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEE
Q 014005 259 KP-SNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (432)
Q Consensus 259 ~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~ 335 (432)
+| .........+-.++|++|. .++++-.. -+.+.+||++.-++ -..+.. ..+|....|
T Consensus 309 kp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l----~avLiQ--------------k~piraf~W 369 (447)
T KOG4497|consen 309 KPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKL----HAVLIQ--------------KHPIRAFEW 369 (447)
T ss_pred cCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhh----hhhhhh--------------ccceeEEEe
Confidence 11 1112223457789999998 88876542 25789999997654 234444 468999999
Q ss_pred cCCCCEEEEee-CCeEEEEec
Q 014005 336 ANDGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 336 s~dg~~l~s~~-~~~i~iwd~ 355 (432)
+|....|+.+. ..++++|..
T Consensus 370 dP~~prL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 370 DPGRPRLVVCTGKSRLYFWAP 390 (447)
T ss_pred CCCCceEEEEcCCceEEEEcC
Confidence 99887777653 378999988
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.38 E-value=1.7e-10 Score=108.93 Aligned_cols=192 Identities=14% Similarity=0.123 Sum_probs=125.4
Q ss_pred cceeEEEEEEcCCCCEEEEEeCC---CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc-e
Q 014005 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL-E 189 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~ 189 (432)
..+...+| +|||++++.++.+ ..|.+||+.+++...+.... +....+.|+|++..++.. .
T Consensus 190 ~~~~~p~~--Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~--------------~~~~~~~~spDg~~l~~~~~ 253 (417)
T TIGR02800 190 EPILSPAW--SPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP--------------GMNGAPAFSPDGSKLAVSLS 253 (417)
T ss_pred CceecccC--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC--------------CCccceEECCCCCEEEEEEC
Confidence 56788899 8999999887644 47999999888655443322 345568899999876643 3
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
......+.+|++.. +...+ + ..+........|+|+++.++.. .++ .|+++|+. ++.. ..+ ..
T Consensus 254 ~~~~~~i~~~d~~~---~~~~~-l-~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~-~~~~-~~l-------~~ 319 (417)
T TIGR02800 254 KDGNPDIYVMDLDG---KQLTR-L-TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD-GGEV-RRL-------TF 319 (417)
T ss_pred CCCCccEEEEECCC---CCEEE-C-CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC-CCCE-EEe-------ec
Confidence 31134688888763 33222 2 2344445577899999988765 333 57777777 3332 222 23
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCC---eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 342 (432)
+...+....|+|++ ++++.++.++ .|.+||+.++.. +.+..+ .......|+|||++|
T Consensus 320 ~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~-----~~l~~~--------------~~~~~p~~spdg~~l 379 (417)
T TIGR02800 320 RGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGGE-----RVLTDT--------------GLDESPSFAPNGRMI 379 (417)
T ss_pred CCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCCe-----EEccCC--------------CCCCCceECCCCCEE
Confidence 34456788999999 8888877765 789999887543 444331 223456899999988
Q ss_pred EEe-eC---CeEEEEec
Q 014005 343 LSR-DY---MNLKVFRY 355 (432)
Q Consensus 343 ~s~-~~---~~i~iwd~ 355 (432)
+.. .+ ..+++.+.
T Consensus 380 ~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 380 LYATTRGGRGVLGLVST 396 (417)
T ss_pred EEEEeCCCcEEEEEEEC
Confidence 874 32 34555554
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.37 E-value=2.1e-09 Score=98.01 Aligned_cols=189 Identities=13% Similarity=0.177 Sum_probs=121.5
Q ss_pred EEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCC
Q 014005 47 LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 126 (432)
Q Consensus 47 l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~ 126 (432)
+++-..++.|.+.|..+.+.+ ..+.... ..-..+.+ ++|
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~---------------------------~~i~~~~------------~~h~~~~~--s~D 47 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVV---------------------------ARIPTGG------------APHAGLKF--SPD 47 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEE---------------------------EEEE-ST------------TEEEEEE---TT-
T ss_pred EEEecCCCEEEEEECCCCeEE---------------------------EEEcCCC------------CceeEEEe--cCC
Confidence 345667899999998886533 5555433 33344677 999
Q ss_pred CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeeccccc
Q 014005 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH 206 (432)
Q Consensus 127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~ 206 (432)
|+++++++.||.|.++|+.+.+........ .....+++++++++++.+... .+.+.++|.+ +
T Consensus 48 gr~~yv~~rdg~vsviD~~~~~~v~~i~~G--------------~~~~~i~~s~DG~~~~v~n~~-~~~v~v~D~~---t 109 (369)
T PF02239_consen 48 GRYLYVANRDGTVSVIDLATGKVVATIKVG--------------GNPRGIAVSPDGKYVYVANYE-PGTVSVIDAE---T 109 (369)
T ss_dssp SSEEEEEETTSEEEEEETTSSSEEEEEE-S--------------SEEEEEEE--TTTEEEEEEEE-TTEEEEEETT---T
T ss_pred CCEEEEEcCCCeEEEEECCcccEEEEEecC--------------CCcceEEEcCCCCEEEEEecC-CCceeEeccc---c
Confidence 999999999999999999988844333222 456789999999999877642 6799999988 5
Q ss_pred ceeeEEeecC------CCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCC
Q 014005 207 ARCQKVYPHA------HDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 278 (432)
Q Consensus 207 ~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 278 (432)
.+.++.+..+ ...++.++..+|....++.. +.+.|.+.|.... ..+..-. ...........|+|+
T Consensus 110 le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~-~~~~~~~------i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 110 LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP-KNLKVTT------IKVGRFPHDGGFDPD 182 (369)
T ss_dssp --EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS-SCEEEEE------EE--TTEEEEEE-TT
T ss_pred ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc-cccceee------ecccccccccccCcc
Confidence 6666655221 34567888888888866655 5688888888733 3222110 122344677899999
Q ss_pred CCcEEEE-EeCCCeEEEEEcccccc
Q 014005 279 YCNLLAY-SSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 279 ~~~~l~~-~~~dg~i~iwd~~~~~~ 302 (432)
+ ++++. ...++.|.++|..++++
T Consensus 183 g-ry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 183 G-RYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp S-SEEEEEEGGGTEEEEEETTTTEE
T ss_pred c-ceeeecccccceeEEEeeccceE
Confidence 9 66555 45677899999887654
No 241
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=8.1e-10 Score=103.38 Aligned_cols=199 Identities=14% Similarity=0.075 Sum_probs=122.2
Q ss_pred cceeEEEEEEcCCCCE--E-EEEeCC--CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 114 EKINRVRWCAAPNGSM--F-ILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~--l-~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..+.+-.| +|||+. + +++..+ ..|.+.++.+++...+..+. +......|+|+++.++..
T Consensus 185 ~~~~sP~w--SPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~--------------g~~~~p~wSPDG~~Laf~ 248 (428)
T PRK01029 185 SLSITPTW--MHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ--------------GNQLMPTFSPRKKLLAFI 248 (428)
T ss_pred CCcccceE--ccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC--------------CCccceEECCCCCEEEEE
Confidence 45567789 899875 2 244333 35777788888766655443 334567899999888765
Q ss_pred eeec---cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEe--CCCCCceeeEeecCCC
Q 014005 189 EWTE---NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWN--LEISDQCFNIVDMKPS 261 (432)
Q Consensus 189 ~~~~---~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd--~~~~~~~~~~~~~~~~ 261 (432)
.... +-.+..|++.....+...+.. ..........+|+|||+.|+.. .+|...+|. ++..+.....+
T Consensus 249 s~~~g~~di~~~~~~~~~g~~g~~~~lt-~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l----- 322 (428)
T PRK01029 249 SDRYGNPDLFIQSFSLETGAIGKPRRLL-NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL----- 322 (428)
T ss_pred ECCCCCcceeEEEeecccCCCCcceEee-cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe-----
Confidence 4211 223444665532123333333 3333345678999999988865 466555554 43112222222
Q ss_pred CcCCCCcceEEEEEcCCCCcEEEEEeCC---CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005 262 NMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (432)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d 338 (432)
..+...+....|+||| +.|+..+.+ ..|.+||+.+++. +.+... ...+....|+||
T Consensus 323 --t~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~-----~~Lt~~-------------~~~~~~p~wSpD 381 (428)
T PRK01029 323 --TKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRD-----YQLTTS-------------PENKESPSWAID 381 (428)
T ss_pred --ccCCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCe-----EEccCC-------------CCCccceEECCC
Confidence 3333456788999999 777766543 3699999988764 444331 235667899999
Q ss_pred CCEEEE-ee---CCeEEEEec
Q 014005 339 GQHLLS-RD---YMNLKVFRY 355 (432)
Q Consensus 339 g~~l~s-~~---~~~i~iwd~ 355 (432)
|++|+. +. ...|+++|+
T Consensus 382 G~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 382 SLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred CCEEEEEECCCCCceEEEEEC
Confidence 998874 32 267888888
No 242
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=1.3e-11 Score=124.37 Aligned_cols=251 Identities=15% Similarity=0.196 Sum_probs=170.5
Q ss_pred cccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccccc
Q 014005 9 SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH 88 (432)
Q Consensus 9 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (432)
+..+.|.-+...++........+-..|.++.=+|...+.+||+.||.+++|....+..+
T Consensus 2185 ~~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v--------------------- 2243 (2439)
T KOG1064|consen 2185 PSNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV--------------------- 2243 (2439)
T ss_pred cccCCccccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE---------------------
Confidence 44566666633344444444555678999999999999999999999999998877633
Q ss_pred CCcceeeeee-cCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccc
Q 014005 89 PEYRYKTEFQ-SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL 167 (432)
Q Consensus 89 p~~~~~~~~~-~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 167 (432)
..+. +-+ ..|+.+.| +.+|+.+..+..||.+.+|.+.. +.....+.|.
T Consensus 2244 ------~~~rt~g~------------s~vtr~~f--~~qGnk~~i~d~dg~l~l~q~~p---k~~~s~qchn-------- 2292 (2439)
T KOG1064|consen 2244 ------VCFRTAGN------------SRVTRSRF--NHQGNKFGIVDGDGDLSLWQASP---KPYTSWQCHN-------- 2292 (2439)
T ss_pred ------EEeeccCc------------chhhhhhh--cccCCceeeeccCCceeecccCC---cceeccccCC--------
Confidence 2222 222 67899999 78999999999999999999872 2333444443
Q ss_pred ccccccccccCCCCCcceecceeec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEe
Q 014005 168 LAEKNFMNEHNPPSFAHGYHLEWTE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN 245 (432)
Q Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd 245 (432)
....++.|-. ..+++.+... ++.+.+||........++. ..|.+.++++++-|..+.+++| .+|.|++||
T Consensus 2293 ---k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~---~~H~~gaT~l~~~P~~qllisggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2293 ---KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH---TCHDGGATVLAYAPKHQLLISGGRKGEVCLFD 2364 (2439)
T ss_pred ---ccccceeeee--hhhhccccCCCCCcccchhcccCcccceee---eecCCCceEEEEcCcceEEEecCCcCcEEEee
Confidence 3344444433 4444444433 7799999987554445555 5799999999999999999999 999999999
Q ss_pred CCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceee
Q 014005 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (432)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 325 (432)
++ ..+..+.+ +. ++ .. .+|++|+..|.++||++..-.+ +..+.. .....++|.-
T Consensus 2365 ~r-qrql~h~~-------~~---------~~-~~-~~f~~~ss~g~ikIw~~s~~~l----l~~~p~---e~ak~gfFr~ 2418 (2439)
T KOG1064|consen 2365 IR-QRQLRHTF-------QA---------LD-TR-EYFVTGSSEGNIKIWRLSEFGL----LHTFPS---EHAKQGFFRN 2418 (2439)
T ss_pred hH-HHHHHHHh-------hh---------hh-hh-heeeccCcccceEEEEccccch----hhcCch---hhcccchhhh
Confidence 99 45544433 21 44 34 7899999999999999986544 454443 1111222222
Q ss_pred eecceeEEEEcCCCCEEEEeeCC
Q 014005 326 IIASISDIKFANDGQHLLSRDYM 348 (432)
Q Consensus 326 ~~~~v~~~~~s~dg~~l~s~~~~ 348 (432)
.. ..+-..+.++++.+|.|+
T Consensus 2419 ~g---~Q~~v~~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2419 IG---MQINVGQCNRIFSCGADG 2438 (2439)
T ss_pred cC---ceeeeccCceEEEecCCC
Confidence 11 334445556666666554
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=5.3e-10 Score=105.74 Aligned_cols=199 Identities=17% Similarity=0.211 Sum_probs=122.4
Q ss_pred ccCCCcEEEEEEcCCCCEEEEeccc---ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
..+.+.+....|+|+|+.|+..+.+ ..|.+|++++++.. .+....
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~----------------------------~l~~~~---- 242 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE----------------------------QITNFE---- 242 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE----------------------------EccCCC----
Confidence 3567788999999999999876543 36888898876421 121122
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEE-EeCCC--eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFIL-STNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (432)
+.+....| +|||+.++. .+.+| .|.+||+.+++...+... . .......|+|++
T Consensus 243 --------g~~~~~~~--SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~---~-----------~~~~~~~~spDg 298 (430)
T PRK00178 243 --------GLNGAPAW--SPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNH---P-----------AIDTEPFWGKDG 298 (430)
T ss_pred --------CCcCCeEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEEcccC---C-----------CCcCCeEECCCC
Confidence 33456889 899998874 44444 688889988775544322 1 334567899999
Q ss_pred cceecceeec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-CC--eEEEEeCCCCCceeeEee
Q 014005 183 AHGYHLEWTE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DL--RINLWNLEISDQCFNIVD 257 (432)
Q Consensus 183 ~~~~~~~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~--~i~lwd~~~~~~~~~~~~ 257 (432)
..++..+... ...+.++++. .++..+.. . .........|+|+|+.++.. . ++ .|.++|+. ++.. +.+
T Consensus 299 ~~i~f~s~~~g~~~iy~~d~~---~g~~~~lt-~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~-tg~~-~~l- 370 (430)
T PRK00178 299 RTLYFTSDRGGKPQIYKVNVN---GGRAERVT-F-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQ-RGSV-RIL- 370 (430)
T ss_pred CEEEEEECCCCCceEEEEECC---CCCEEEee-c-CCCCccceEECCCCCEEEEEEccCCceEEEEEECC-CCCE-EEc-
Confidence 8776654311 2356666665 33333322 1 12233457899999998866 3 43 57888888 4433 322
Q ss_pred cCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC-C--eEEEEEccc
Q 014005 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-G--FVRLVDMRQ 299 (432)
Q Consensus 258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g--~i~iwd~~~ 299 (432)
.. ........|+|+| +.++..+.+ | .+.++++..
T Consensus 371 ------t~-~~~~~~p~~spdg-~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 371 ------TD-TSLDESPSVAPNG-TMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ------cC-CCCCCCceECCCC-CEEEEEEecCCceEEEEEECCC
Confidence 11 1112246899999 777666543 3 466777653
No 244
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=8.7e-10 Score=104.26 Aligned_cols=192 Identities=14% Similarity=0.113 Sum_probs=122.2
Q ss_pred cceeEEEEEEcCCCCEEEEEeCC---CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce-
Q 014005 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE- 189 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~- 189 (432)
..+....| +|||+.|+..+.+ ..|.+|++.+++.+.+.... +......|+|++..++...
T Consensus 199 ~~~~~p~w--SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~--------------g~~~~~~~SpDG~~la~~~~ 262 (430)
T PRK00178 199 EPILSPRW--SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE--------------GLNGAPAWSPDGSKLAFVLS 262 (430)
T ss_pred CceeeeeE--CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC--------------CCcCCeEECCCCCEEEEEEc
Confidence 67888999 8999998876543 36899999888765543322 3344688999998877443
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
...+..+.++|+. .+...+ + ..+........|+|+|+.++.. .++ .|+++|+. ++...+.. ..+
T Consensus 263 ~~g~~~Iy~~d~~---~~~~~~-l-t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~-~g~~~~lt------~~~ 330 (430)
T PRK00178 263 KDGNPEIYVMDLA---SRQLSR-V-TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN-GGRAERVT------FVG 330 (430)
T ss_pred cCCCceEEEEECC---CCCeEE-c-ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEee------cCC
Confidence 2113367778887 333332 3 3444556678999999987755 344 57777776 34332221 111
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCC-C--eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSR-G--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 342 (432)
.......|+|++ +.|+..+.+ + .|.++|+.+++. +.+.. ........|+|||++|
T Consensus 331 --~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~-----~~lt~--------------~~~~~~p~~spdg~~i 388 (430)
T PRK00178 331 --NYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSV-----RILTD--------------TSLDESPSVAPNGTML 388 (430)
T ss_pred --CCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCE-----EEccC--------------CCCCCCceECCCCCEE
Confidence 223457899999 777766543 3 588889887763 33332 1122356899999998
Q ss_pred EEe-eC---CeEEEEec
Q 014005 343 LSR-DY---MNLKVFRY 355 (432)
Q Consensus 343 ~s~-~~---~~i~iwd~ 355 (432)
+.. .+ ..+.++++
T Consensus 389 ~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 389 IYATRQQGRGVLMLVSI 405 (430)
T ss_pred EEEEecCCceEEEEEEC
Confidence 764 22 34666666
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.31 E-value=4.9e-10 Score=105.76 Aligned_cols=198 Identities=13% Similarity=0.143 Sum_probs=125.4
Q ss_pred ccCCCcEEEEEEcCCCCEEEEeccc---ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
..+...+...+|+|+|++|+.++.+ ..|.+||+.+++.. .+..+.
T Consensus 186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----------------------------~~~~~~---- 233 (417)
T TIGR02800 186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----------------------------KVASFP---- 233 (417)
T ss_pred ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----------------------------EeecCC----
Confidence 3455678899999999999887643 47999999876421 222333
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEE-eCCC--eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILS-TNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (432)
..+.+++| +||++.|+.. +.++ .|.+||+.++....+.... .......|++++
T Consensus 234 --------~~~~~~~~--spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--------------~~~~~~~~s~dg 289 (417)
T TIGR02800 234 --------GMNGAPAF--SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP--------------GIDTEPSWSPDG 289 (417)
T ss_pred --------CCccceEE--CCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCC--------------CCCCCEEECCCC
Confidence 45567889 8999877654 4443 5888898877654443221 223456788999
Q ss_pred cceecceeec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCC---eEEEEeCCCCCceeeEee
Q 014005 183 AHGYHLEWTE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL---RINLWNLEISDQCFNIVD 257 (432)
Q Consensus 183 ~~~~~~~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~---~i~lwd~~~~~~~~~~~~ 257 (432)
..++..+... ...+.++++. ..+..+ + ..+........|+|++++++.+ .++ .|.+||+. ++. ...+
T Consensus 290 ~~l~~~s~~~g~~~iy~~d~~---~~~~~~-l-~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~-~~~-~~~l- 361 (417)
T TIGR02800 290 KSIAFTSDRGGSPQIYMMDAD---GGEVRR-L-TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD-GGG-ERVL- 361 (417)
T ss_pred CEEEEEECCCCCceEEEEECC---CCCEEE-e-ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC-CCC-eEEc-
Confidence 8876554311 2356666765 333222 2 2344567788999999999877 554 78888888 333 2222
Q ss_pred cCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC---eEEEEEcc
Q 014005 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMR 298 (432)
Q Consensus 258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~iwd~~ 298 (432)
... .......|+|++ +.|+.++.++ .+.+.+..
T Consensus 362 ------~~~-~~~~~p~~spdg-~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 362 ------TDT-GLDESPSFAPNG-RMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred ------cCC-CCCCCceECCCC-CEEEEEEeCCCcEEEEEEECC
Confidence 111 123456899999 7777666544 35555543
No 246
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.30 E-value=1.4e-09 Score=91.27 Aligned_cols=241 Identities=12% Similarity=0.109 Sum_probs=157.5
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee--
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT-- 191 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-- 191 (432)
....+++| +.|..-++.|..+| .++|+.+.-+ .....+... .+-.+..+.|-.+---++.|...
T Consensus 6 ~~~lsvs~--NQD~ScFava~~~G-friyn~~P~k--e~~~r~~~~---------~G~~~veMLfR~N~laLVGGg~~pk 71 (346)
T KOG2111|consen 6 PKTLSVSF--NQDHSCFAVATDTG-FRIYNCDPFK--ESASRQFID---------GGFKIVEMLFRSNYLALVGGGSRPK 71 (346)
T ss_pred CceeEEEE--ccCCceEEEEecCc-eEEEecCchh--hhhhhcccc---------CchhhhhHhhhhceEEEecCCCCCC
Confidence 44566999 78888888888766 8999886422 111111111 01223333333332233333321
Q ss_pred -ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005 192 -ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (432)
Q Consensus 192 -~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (432)
+.+.+.|||=. ..+++..+ .-..+|.++.+.++ .+++.-.+.|++|.....-+.+..++. .......
T Consensus 72 y~pNkviIWDD~---k~~~i~el--~f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et-----~~NPkGl 139 (346)
T KOG2111|consen 72 YPPNKVIIWDDL---KERCIIEL--SFNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIET-----RSNPKGL 139 (346)
T ss_pred CCCceEEEEecc---cCcEEEEE--EeccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeec-----ccCCCce
Confidence 25689999944 66677665 45678999999765 466668899999999855555555522 1222234
Q ss_pred EEEEEcCCCCcEEEEE-eCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-C
Q 014005 271 TSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 348 (432)
Q Consensus 271 ~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~ 348 (432)
.+++-+-.. .+||.- -.-|.|.|-|+...+.- ....+..| .+.|.+++.+-+|..+||++. |
T Consensus 140 C~~~~~~~k-~~LafPg~k~GqvQi~dL~~~~~~--~p~~I~AH-------------~s~Iacv~Ln~~Gt~vATaStkG 203 (346)
T KOG2111|consen 140 CSLCPTSNK-SLLAFPGFKTGQVQIVDLASTKPN--APSIINAH-------------DSDIACVALNLQGTLVATASTKG 203 (346)
T ss_pred EeecCCCCc-eEEEcCCCccceEEEEEhhhcCcC--CceEEEcc-------------cCceeEEEEcCCccEEEEeccCc
Confidence 444433333 555553 36689999999865431 12566676 899999999999999999866 5
Q ss_pred -eEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 349 -NLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 349 -~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
-|||||. .++++++--. .+..++.+.++.+..+++..|..|+++||..
T Consensus 204 TLIRIFdt~~g~~l~E~RRG~---------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 204 TLIRIFDTEDGTLLQELRRGV---------DRADIYCIAFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred EEEEEEEcCCCcEeeeeecCC---------chheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence 5799999 6777765432 3556677777777888999999999999983
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=9.1e-10 Score=103.86 Aligned_cols=191 Identities=13% Similarity=0.127 Sum_probs=117.7
Q ss_pred cceeEEEEEEcCCCCEEEEEeCC---CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
..+....| +|||+.|+..+.+ ..|.+||+.+++...+.... +......|+|++..++....
T Consensus 218 ~~~~~p~w--SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~--------------g~~~~~~wSPDG~~La~~~~ 281 (448)
T PRK04792 218 EPLMSPAW--SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP--------------GINGAPRFSPDGKKLALVLS 281 (448)
T ss_pred CcccCceE--CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC--------------CCcCCeeECCCCCEEEEEEe
Confidence 67888999 8999998876543 35888899887755443322 23346789999998765432
Q ss_pred eccc--eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCCCCCceeeEeecCCCCcC
Q 014005 191 TENM--ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMD 264 (432)
Q Consensus 191 ~~~~--~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (432)
. ++ .|.++|+. .++..+ + ..+.......+|+|||+.++.. .++ .|+++|++ +++..+.. ..
T Consensus 282 ~-~g~~~Iy~~dl~---tg~~~~-l-t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-~g~~~~Lt------~~ 348 (448)
T PRK04792 282 K-DGQPEIYVVDIA---TKALTR-I-TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-SGKVSRLT------FE 348 (448)
T ss_pred C-CCCeEEEEEECC---CCCeEE-C-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEEe------cC
Confidence 1 34 46667776 333333 3 3344556778999999988765 344 45666666 34332221 12
Q ss_pred CCCcceEEEEEcCCCCcEEEEEeC-CC--eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005 265 DLTEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (432)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 341 (432)
+ ......+|+|+| +.|+..+. ++ .|.++|+.+++. ..+... .......|+|||++
T Consensus 349 g--~~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~-----~~lt~~--------------~~d~~ps~spdG~~ 406 (448)
T PRK04792 349 G--EQNLGGSITPDG-RSMIMVNRTNGKFNIARQDLETGAM-----QVLTST--------------RLDESPSVAPNGTM 406 (448)
T ss_pred C--CCCcCeeECCCC-CEEEEEEecCCceEEEEEECCCCCe-----EEccCC--------------CCCCCceECCCCCE
Confidence 2 223457899999 66666554 44 455678777653 333331 12224579999998
Q ss_pred EEEe-eC---CeEEEEec
Q 014005 342 LLSR-DY---MNLKVFRY 355 (432)
Q Consensus 342 l~s~-~~---~~i~iwd~ 355 (432)
|+.. .. ..+++++.
T Consensus 407 I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 407 VIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred EEEEEecCCceEEEEEEC
Confidence 8763 22 34666776
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.29 E-value=2.6e-08 Score=90.97 Aligned_cols=257 Identities=9% Similarity=0.067 Sum_probs=150.5
Q ss_pred cceeEEEEEEcCCCCEEEEEeC----CCeEEEEEccC--cceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 114 EKINRVRWCAAPNGSMFILSTN----DKTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~----d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
....-+++ +|++++|.+... ++.|..|++.. +++..+....... .....++.++++.+++.
T Consensus 37 ~~Ps~l~~--~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g-----------~~p~~i~~~~~g~~l~v 103 (345)
T PF10282_consen 37 ENPSWLAV--SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG-----------SSPCHIAVDPDGRFLYV 103 (345)
T ss_dssp SSECCEEE---TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS-----------SCEEEEEECTTSSEEEE
T ss_pred CCCceEEE--EeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC-----------CCcEEEEEecCCCEEEE
Confidence 34556788 889999988865 57999999876 4555544332111 34456888999999988
Q ss_pred ceeeccceEEEEeecccc-cceeeEEee---------cCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeE
Q 014005 188 LEWTENMATKIANVGNSV-HARCQKVYP---------HAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNI 255 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~-~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~ 255 (432)
+... ++.+.++++.... .......+. ........++.++|+++++++. ....|.+|+++.....+..
T Consensus 104 any~-~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~ 182 (345)
T PF10282_consen 104 ANYG-GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP 182 (345)
T ss_dssp EETT-TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE
T ss_pred EEcc-CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE
Confidence 7642 7789999998531 122222220 1234568899999999998876 6779999999843322221
Q ss_pred eecCCCCcCCCCcceEEEEEcCCCCcEE-EEEeCCCeEEEEEcc--ccccccccceeecccccccCCccceeeeecceeE
Q 014005 256 VDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (432)
Q Consensus 256 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~ 332 (432)
.. ... .......+.+.|+|++ +++ ++...++.|.++++. ++.. +.++.....+..... ......
T Consensus 183 ~~--~~~-~~~G~GPRh~~f~pdg-~~~Yv~~e~s~~v~v~~~~~~~g~~--~~~~~~~~~~~~~~~-------~~~~~~ 249 (345)
T PF10282_consen 183 VD--SIK-VPPGSGPRHLAFSPDG-KYAYVVNELSNTVSVFDYDPSDGSL--TEIQTISTLPEGFTG-------ENAPAE 249 (345)
T ss_dssp EE--EEE-CSTTSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEE--EEEEEEESCETTSCS-------SSSEEE
T ss_pred ee--ccc-cccCCCCcEEEEcCCc-CEEEEecCCCCcEEEEeecccCCce--eEEEEeeeccccccc-------cCCcee
Confidence 10 001 2334568999999999 555 555578899999998 4432 112222211111110 136788
Q ss_pred EEEcCCCCEEEEe--eCCeEEEEec-C---cceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 333 IKFANDGQHLLSR--DYMNLKVFRY-E---PVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 333 ~~~s~dg~~l~s~--~~~~i~iwd~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
++++|||++|..+ ..+.|.+|++ . .+..+..-.. .. ..+-......+-.+.+++...++.|.+|+
T Consensus 250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~----~G---~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT----GG---KFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE----SS---SSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC----CC---CCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 9999999998875 3389999999 1 2332221110 00 00111111112234566777888999997
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=1.5e-08 Score=87.16 Aligned_cols=289 Identities=8% Similarity=0.057 Sum_probs=181.9
Q ss_pred ccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecc---cceEEEEEecC--CcCCCCccccchhhhcccc
Q 014005 8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVG--GKNTPNQHISRSELEKQMD 82 (432)
Q Consensus 8 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~ 82 (432)
......|.+...-|+....+.+.+.+..+=|+|+|++++|.++-. +|.|.-|.++. +++.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt--------------- 79 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT--------------- 79 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE---------------
Confidence 345667888766677778888888999999999999999888754 47788888875 3321
Q ss_pred ccccccCCccee--eeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeC-CCeEEEEEccC-cceeeeeecCCC
Q 014005 83 FTSTSHPEYRYK--TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRD-QKVKKIKEMDHF 158 (432)
Q Consensus 83 ~~~~~~p~~~~~--~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~-~~~~~~~~~~~~ 158 (432)
++ ....+ .+-..++. ++++++++++.. .|.|.++-++. |.+........|
T Consensus 80 ----------~ln~~~~~g--------------~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h 133 (346)
T COG2706 80 ----------FLNRQTLPG--------------SPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKH 133 (346)
T ss_pred ----------EeeccccCC--------------CCCeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeeec
Confidence 11 11122 23367888 899999999854 58899999854 544333222222
Q ss_pred CccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--
Q 014005 159 PFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-- 236 (432)
Q Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-- 236 (432)
..- .........-+-...+.|+++++.+.... -..+.+|++..+.. .......-......+.|.|+|++++....
T Consensus 134 ~g~-~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-~Dri~~y~~~dg~L-~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E 210 (346)
T COG2706 134 TGS-GPHERQESPHVHSANFTPDGRYLVVPDLG-TDRIFLYDLDDGKL-TPADPAEVKPGAGPRHIVFHPNGKYAYLVNE 210 (346)
T ss_pred CCC-CCCccccCCccceeeeCCCCCEEEEeecC-CceEEEEEcccCcc-ccccccccCCCCCcceEEEcCCCcEEEEEec
Confidence 100 00000001125667889999988887652 23677888873311 11111112455678899999999987765
Q ss_pred cCCeEEEEeCCCCCceeeE---eecCCCCcCCCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccceeecc
Q 014005 237 DDLRINLWNLEISDQCFNI---VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRD 312 (432)
Q Consensus 237 ~d~~i~lwd~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 312 (432)
-+++|.+|..+.....++. +..-|..+.+. .+.-.|..+|+| ++|.++. ....|.+|.+....-. +.....
T Consensus 211 L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~-~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~---L~~~~~ 285 (346)
T COG2706 211 LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT-NWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGK---LELVGI 285 (346)
T ss_pred cCCEEEEEEEcCCCceEEEeeeeccCccccCCC-CceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCE---EEEEEE
Confidence 6999999999843333333 33333343332 456788999999 8777654 2337778776532211 122221
Q ss_pred cccccCCccceeeeecceeEEEEcCCCCEEEEe-eC-CeEEEEec
Q 014005 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKVFRY 355 (432)
Q Consensus 313 h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~-~~i~iwd~ 355 (432)
.+. ......+..|+++|++|+++ .+ ..|.+|..
T Consensus 286 ~~t----------eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 286 TPT----------EGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred ecc----------CCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 100 02346789999999999885 44 88999988
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=4.9e-10 Score=105.65 Aligned_cols=219 Identities=12% Similarity=0.127 Sum_probs=129.0
Q ss_pred ccCCCcEEEEEEcCCCCEEEEeccc-c--eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRG-G--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~d-g--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++.. .+..+.
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-------------------------~lt~~~------- 261 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-------------------------KVTSFP------- 261 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-------------------------EecCCC-------
Confidence 3456678899999999998876543 2 5888888776421 111122
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEE-eCCCe--EEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILS-TNDKT--IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (432)
......+| +|||+.|+.. +.++. |.++|+.+++...+... . .......|+|++
T Consensus 262 --------g~~~~~~w--SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~---~-----------~~~~~p~wSpDG 317 (448)
T PRK04792 262 --------GINGAPRF--SPDGKKLALVLSKDGQPEIYVVDIATKALTRITRH---R-----------AIDTEPSWHPDG 317 (448)
T ss_pred --------CCcCCeeE--CCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccC---C-----------CCccceEECCCC
Confidence 23346789 8999988654 55664 77778887765544322 1 334567899999
Q ss_pred cceecceeec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCe--EEEEeCCCCCceeeEee
Q 014005 183 AHGYHLEWTE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVD 257 (432)
Q Consensus 183 ~~~~~~~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~--i~lwd~~~~~~~~~~~~ 257 (432)
.+++..+... ...+.++|+. .++..+.. .........+|+|+|++++.. .++. |.++|+. ++. ...+
T Consensus 318 ~~I~f~s~~~g~~~Iy~~dl~---~g~~~~Lt--~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~-~g~-~~~l- 389 (448)
T PRK04792 318 KSLIFTSERGGKPQIYRVNLA---SGKVSRLT--FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLE-TGA-MQVL- 389 (448)
T ss_pred CEEEEEECCCCCceEEEEECC---CCCEEEEe--cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECC-CCC-eEEc-
Confidence 9887654311 2345555665 33333221 122233457899999998865 4454 5556766 333 2322
Q ss_pred cCCCCcCCCCcceEEEEEcCCCCcEEEEEe-CCC--eEEEEEccccccccccceeecccccccCCccceeeeecceeEEE
Q 014005 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 334 (432)
Q Consensus 258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~ 334 (432)
... .......|+|+| +.|+..+ .+| .+.+++.. |+. .+.+..+ .+.+...+
T Consensus 390 ------t~~-~~d~~ps~spdG-~~I~~~~~~~g~~~l~~~~~~-G~~----~~~l~~~-------------~g~~~~p~ 443 (448)
T PRK04792 390 ------TST-RLDESPSVAPNG-TMVIYSTTYQGKQVLAAVSID-GRF----KARLPAG-------------QGEVKSPA 443 (448)
T ss_pred ------cCC-CCCCCceECCCC-CEEEEEEecCCceEEEEEECC-CCc----eEECcCC-------------CCCcCCCc
Confidence 111 112245799999 6666554 444 36777764 443 3444442 34566778
Q ss_pred EcC
Q 014005 335 FAN 337 (432)
Q Consensus 335 ~s~ 337 (432)
|+|
T Consensus 444 Wsp 446 (448)
T PRK04792 444 WSP 446 (448)
T ss_pred cCC
Confidence 876
No 251
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=9e-09 Score=92.99 Aligned_cols=276 Identities=10% Similarity=0.070 Sum_probs=156.1
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
....+..+++++|+++|.+. +..++|++....... +....
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~-----------------------------lt~~~---------- 73 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVV-----------------------------LCVEL---------- 73 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEE-----------------------------EEecc----------
Confidence 34467788999999988865 458999998876421 11111
Q ss_pred hhcceeEEEEEEcCCCCEEEEE-----eCC-----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC
Q 014005 112 IEEKINRVRWCAAPNGSMFILS-----TND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~-----~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 181 (432)
..+.++.| +|-+.+|.+= ..+ -.+++|+++++.......... .++ -...|+.+
T Consensus 74 --~~~~~L~f--SP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~-----------Q~~--W~~qfs~d 136 (566)
T KOG2315|consen 74 --KKTYDLLF--SPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKM-----------QNG--WVPQFSID 136 (566)
T ss_pred --ceeeeeee--cccccccccccccccccCCCCCCCceeeeeeccceehhheehhh-----------hcC--cccccccc
Confidence 45678889 8888887762 112 347799998854222111111 112 25556655
Q ss_pred CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC--CEEEEE------cCCeEEEEeCCC-----
Q 014005 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA------DDLRINLWNLEI----- 248 (432)
Q Consensus 182 ~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~------~d~~i~lwd~~~----- 248 (432)
..+.+-.. .+.+.+|++.. ....... -|...|+.+.++|.+ ..+|+- .-+.+++|....
T Consensus 137 Esl~arlv---~nev~f~~~~~--f~~~~~k---l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~ 208 (566)
T KOG2315|consen 137 ESLAARLV---SNEVQFYDLGS--FKTIQHK---LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ 208 (566)
T ss_pred hhhhhhhh---cceEEEEecCC--ccceeee---eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc
Confidence 44333222 45677777663 1112222 244566666666652 223321 123455554410
Q ss_pred ----------------------------------------CCceeeEeecCCC--Cc-CCCCcceEEEEEcCCCCcEEEE
Q 014005 249 ----------------------------------------SDQCFNIVDMKPS--NM-DDLTEVITSAEFHPIYCNLLAY 285 (432)
Q Consensus 249 ----------------------------------------~~~~~~~~~~~~~--~~-~~~~~~v~~~~~~p~~~~~l~~ 285 (432)
..+.+..+.+... .. ....++|.++.|+|++ +-|++
T Consensus 209 ~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~-~EF~V 287 (566)
T KOG2315|consen 209 PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSG-REFAV 287 (566)
T ss_pred hhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCC-CEEEE
Confidence 0001111111000 00 1235789999999999 55554
Q ss_pred --EeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-e-eC--CeEEEEec---C
Q 014005 286 --SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-R-DY--MNLKVFRY---E 356 (432)
Q Consensus 286 --~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~-~~--~~i~iwd~---~ 356 (432)
|-.-..+.|||++ +.. +..|. .++-+.+-|+|.|++|+. | +. |.+.|||+ +
T Consensus 288 vyGfMPAkvtifnlr-~~~----v~df~---------------egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 288 VYGFMPAKVTIFNLR-GKP----VFDFP---------------EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK 347 (566)
T ss_pred EEecccceEEEEcCC-CCE----eEeCC---------------CCCccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence 4466789999998 443 34443 367889999999999876 3 33 99999999 5
Q ss_pred cceeEeecceeeeehhhhhcccccccccceeeEEEEeec----ccceeeeec
Q 014005 357 PVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTL----YLINLSALS 404 (432)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~i~~~~ 404 (432)
.+..+..... .+|.-..+...++.+|.+ -|+.++||.
T Consensus 348 ~i~~~~a~~t-----------t~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 348 LIAKFKAANT-----------TVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred hccccccCCc-----------eEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 5555544332 333322333444445544 378899998
No 252
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.28 E-value=9.1e-10 Score=93.40 Aligned_cols=204 Identities=10% Similarity=0.150 Sum_probs=141.5
Q ss_pred CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
-..+++++.+.++-..|..|-..|++.-+.+...-. ...+.+.+..|.
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-----------------------km~~~r~~~~h~--------- 114 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-----------------------KMTFLKDYLAHQ--------- 114 (404)
T ss_pred CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-----------------------hcchhhhhhhhh---------
Confidence 366899999999999999999999998887654221 122335667788
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
..|..+-| +-..+++++.+.|..+.---.+.+. .+..+... ..-.+..+ +-.+...|..
T Consensus 115 ---~~v~~~if--~~~~e~V~s~~~dk~~~~hc~e~~~--~lg~Y~~~------------~~~t~~~~--d~~~~fvGd~ 173 (404)
T KOG1409|consen 115 ---ARVSAIVF--SLTHEWVLSTGKDKQFAWHCTESGN--RLGGYNFE------------TPASALQF--DALYAFVGDH 173 (404)
T ss_pred ---cceeeEEe--cCCceeEEEeccccceEEEeeccCC--cccceEee------------ccCCCCce--eeEEEEeccc
Confidence 89999999 6677899999999877655555444 11111100 01111111 1113334443
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
.+.+.+-.+... .-..+..+ .+|.+.+.+++|.+....+.+| .|..+.+||+......... ..+|...
T Consensus 174 --~gqvt~lr~~~~-~~~~i~~~-~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e-------l~gh~~k 242 (404)
T KOG1409|consen 174 --SGQITMLKLEQN-GCQLITTF-NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE-------LQGHNDK 242 (404)
T ss_pred --ccceEEEEEeec-CCceEEEE-cCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee-------eccchhh
Confidence 455555554422 33455566 8999999999999999999999 9999999999822222222 3789999
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccc
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 299 (432)
|..+..-+.- +.+.+++.||.|-+||+.-
T Consensus 243 V~~l~~~~~t-~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 243 VQALSYAQHT-RQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhhhhhh-eeeeeccCCCeEEEEeccc
Confidence 9999888877 8899999999999999874
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.9e-09 Score=100.91 Aligned_cols=223 Identities=10% Similarity=0.056 Sum_probs=130.3
Q ss_pred CCcEEEEEEcCCCCEE---EEecccc--eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 32 VDIVSAIEFDKTGDYL---AVGDRGG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l---~t~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
...+..-.|+|||+.+ .+...+| .|.+.++.+++.. .+..+.
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-------------------------~lt~~~-------- 230 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-------------------------KILALQ-------- 230 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-------------------------EeecCC--------
Confidence 4456778999999752 2444444 4666677766421 222232
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeC-----CCeEEEEEccCc---ceeeeeecCCCCccccccccccccccccccC
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTN-----DKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAEKNFMNEHN 178 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~-----d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 178 (432)
+.....+| +|||+.|+..+. +..+.+|++..+ ....+... .. +......|
T Consensus 231 -------g~~~~p~w--SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~--~~-----------~~~~~p~w 288 (428)
T PRK01029 231 -------GNQLMPTF--SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE--AF-----------GTQGNPSF 288 (428)
T ss_pred -------CCccceEE--CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC--CC-----------CCcCCeEE
Confidence 33456789 899998887653 223445776643 22222211 00 23356789
Q ss_pred CCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cC--CeEEEEeCCCCCceee
Q 014005 179 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD--LRINLWNLEISDQCFN 254 (432)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d--~~i~lwd~~~~~~~~~ 254 (432)
+|++..++..+.. ++...+|.+.....+...+.+ ..+...+....|+|||+.++.. .+ ..|.+||+. +++...
T Consensus 289 SPDG~~Laf~s~~-~g~~~ly~~~~~~~g~~~~~l-t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~-~g~~~~ 365 (428)
T PRK01029 289 SPDGTRLVFVSNK-DGRPRIYIMQIDPEGQSPRLL-TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLA-TGRDYQ 365 (428)
T ss_pred CCCCCEEEEEECC-CCCceEEEEECcccccceEEe-ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECC-CCCeEE
Confidence 9999987765431 454555554321112223333 3344567789999999988865 33 468999998 444332
Q ss_pred EeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe-C--CCeEEEEEccccccccccceeecccccccCCccceeeeeccee
Q 014005 255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-S--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (432)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~ 331 (432)
+ ......+....|+||| +.|+... . ...|.++|+..++. ...... .+.+.
T Consensus 366 -L-------t~~~~~~~~p~wSpDG-~~L~f~~~~~g~~~L~~vdl~~g~~----~~Lt~~--------------~g~~~ 418 (428)
T PRK01029 366 -L-------TTSPENKESPSWAIDS-LHLVYSAGNSNESELYLISLITKKT----RKIVIG--------------SGEKR 418 (428)
T ss_pred -c-------cCCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCE----EEeecC--------------CCccc
Confidence 2 2222346778999999 7666443 2 34688889887654 222222 34566
Q ss_pred EEEEcCCC
Q 014005 332 DIKFANDG 339 (432)
Q Consensus 332 ~~~~s~dg 339 (432)
..+|+|-.
T Consensus 419 ~p~Ws~~~ 426 (428)
T PRK01029 419 FPSWGAFP 426 (428)
T ss_pred CceecCCC
Confidence 78888753
No 254
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=1.7e-10 Score=106.73 Aligned_cols=271 Identities=13% Similarity=0.128 Sum_probs=179.7
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
.......|++|+....|+|+|+.||.+++..+.+.....+ .+.+. -.-+...-+++.||+
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~----~~gla--------a~snLsmNQtLeGH~-------- 71 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLN----KSGLA--------AASNLSMNQTLEGHN-------- 71 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCccc----ccccc--------cccccchhhhhccCc--------
Confidence 3455789999999999999999999999999876542110 00000 001334447899999
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
..|.-+.| +.+.+.|-++..+|.|.+|-+-.+.+-.-...+.. .+.|.++.|+.+|..+....
T Consensus 72 ----~sV~vvTW--Ne~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRn-----------KSvV~SmsWn~dG~kIcIvY 134 (1189)
T KOG2041|consen 72 ----ASVMVVTW--NENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRN-----------KSVVVSMSWNLDGTKICIVY 134 (1189)
T ss_pred ----ceEEEEEe--ccccccccccCCCceEEEEeeecccHHHHHhhCcC-----------ccEEEEEEEcCCCcEEEEEE
Confidence 99999999 78888999999999999999987763221112222 26788999999999988877
Q ss_pred eeccceEEEEeeccccc-ceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCC-----CC
Q 014005 190 WTENMATKIANVGNSVH-ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP-----SN 262 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~-----~~ 262 (432)
. ||.|.+-.++.+.. ++.+ .......+.|++|.+.++.+ .+|.+.++|.+ .+-.. .+.+.. ..
T Consensus 135 e--DGavIVGsvdGNRIwgKeL------kg~~l~hv~ws~D~~~~Lf~~ange~hlydnq-gnF~~-Kl~~~c~Vn~tg~ 204 (1189)
T KOG2041|consen 135 E--DGAVIVGSVDGNRIWGKEL------KGQLLAHVLWSEDLEQALFKKANGETHLYDNQ-GNFER-KLEKDCEVNGTGI 204 (1189)
T ss_pred c--cCCEEEEeeccceecchhc------chheccceeecccHHHHHhhhcCCcEEEeccc-ccHHH-hhhhceEEeeeee
Confidence 7 88887776653211 1111 11234478899999999999 99999999987 22110 000000 00
Q ss_pred cCCCCcceEEEEEc--------CCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEE
Q 014005 263 MDDLTEVITSAEFH--------PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 334 (432)
Q Consensus 263 ~~~~~~~v~~~~~~--------p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~ 334 (432)
+......|-.+.|. |+- ..|+.+-.+|.+.|..-..... ...+.. .-.+.+..
T Consensus 205 ~s~~~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~QiMR~eND~~----Pvv~dt--------------gm~~vgak 265 (1189)
T KOG2041|consen 205 FSNFPTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQIMRSENDPE----PVVVDT--------------GMKIVGAK 265 (1189)
T ss_pred ecCCCccccceeeccCccccCCCCC-CEEEEEEcCceehhhhhcCCCC----CeEEec--------------ccEeecce
Confidence 01111224555553 465 7899999999988865443332 122222 24688999
Q ss_pred EcCCCCEEEEee---------C-CeEEEEec--CcceeEeecce
Q 014005 335 FANDGQHLLSRD---------Y-MNLKVFRY--EPVMTLSFCGI 366 (432)
Q Consensus 335 ~s~dg~~l~s~~---------~-~~i~iwd~--~~~~~~~~~~~ 366 (432)
|+++|..||.++ | +.|.++.. ..+.+++.++.
T Consensus 266 Wnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~ 309 (1189)
T KOG2041|consen 266 WNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGS 309 (1189)
T ss_pred ecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCc
Confidence 999999998742 2 57888887 56666666553
No 255
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=2.2e-09 Score=96.79 Aligned_cols=233 Identities=11% Similarity=0.116 Sum_probs=148.5
Q ss_pred EEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcc
Q 014005 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (432)
Q Consensus 36 ~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (432)
+++.|++|..+.|- -..+.+.+|+..+.+.. .-.-|. ..
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~----------------------------~~kl~~------------~~ 167 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI----------------------------QHKLSV------------SG 167 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCCccce----------------------------eeeeec------------cc
Confidence 68899988775433 23357999998774321 122244 77
Q ss_pred eeEEEEEEcCCCCEEEEE-----eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 116 INRVRWCAAPNGSMFILS-----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 116 v~~l~~~~s~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
|..+.++|.|....+|+= +.-..|++|............... +. ...-..+.|++-+.-+.....
T Consensus 168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ks---------FF-kadkvqm~WN~~gt~LLvLas 237 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKS---------FF-KADKVQMKWNKLGTALLVLAS 237 (566)
T ss_pred eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcc---------cc-ccceeEEEeccCCceEEEEEE
Confidence 888999555455566652 445689999876322111110000 00 011223556655543322221
Q ss_pred e-c---------cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEE--E-cCCeEEEEeCCCCCceeeEee
Q 014005 191 T-E---------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVD 257 (432)
Q Consensus 191 ~-~---------~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~-~d~~i~lwd~~~~~~~~~~~~ 257 (432)
+ . ...+.+.+++ ...+.-. ....++|.++.|+|+++.+++ | .-..+.++|++ +..+..+
T Consensus 238 tdVDktn~SYYGEq~Lyll~t~---g~s~~V~--L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df- 309 (566)
T KOG2315|consen 238 TDVDKTNASYYGEQTLYLLATQ---GESVSVP--LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDF- 309 (566)
T ss_pred EeecCCCccccccceEEEEEec---CceEEEe--cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeC-
Confidence 1 1 2367777766 2233222 345789999999999988775 5 78899999999 4444422
Q ss_pred cCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC---CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEE
Q 014005 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 334 (432)
Q Consensus 258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~ 334 (432)
-.++=+++-|+|.| ++++.+|.+ |.|.+||..+.+. +..+.. ..-+-..
T Consensus 310 --------~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~----i~~~~a---------------~~tt~~e 361 (566)
T KOG2315|consen 310 --------PEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKL----IAKFKA---------------ANTTVFE 361 (566)
T ss_pred --------CCCCccceEECCCC-CEEEEeecCCCCCceEEEeccchhh----cccccc---------------CCceEEE
Confidence 33455789999999 888888754 7899999998665 455655 4556789
Q ss_pred EcCCCCEEEEee-------CCeEEEEec
Q 014005 335 FANDGQHLLSRD-------YMNLKVFRY 355 (432)
Q Consensus 335 ~s~dg~~l~s~~-------~~~i~iwd~ 355 (432)
|+|||++++++. |+.++||+.
T Consensus 362 W~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 362 WSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 999999998852 478999999
No 256
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.23 E-value=1e-09 Score=93.05 Aligned_cols=296 Identities=10% Similarity=0.110 Sum_probs=170.3
Q ss_pred cCCCcEEEEEEcCCCC--EEEEecccceEEEEEecCCcCCCC-----ccccchhhhcccccccccc---CCcceeeee-e
Q 014005 30 QDVDIVSAIEFDKTGD--YLAVGDRGGRVILFETVGGKNTPN-----QHISRSELEKQMDFTSTSH---PEYRYKTEF-Q 98 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~--~l~t~~~dg~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---p~~~~~~~~-~ 98 (432)
.-...|..+.|.++++ .++....|.+|++|.+......+. .+.....+....-.++..+ .+..+.+.+ .
T Consensus 82 eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aN 161 (433)
T KOG1354|consen 82 EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYAN 161 (433)
T ss_pred hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccc
Confidence 3456799999998775 456667899999999876543210 0000000000000000001 133344444 3
Q ss_pred cCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc-ceeeeeecCCCCcccccccccccccccccc
Q 014005 99 SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEH 177 (432)
Q Consensus 99 ~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 177 (432)
+|+ .-|++|++ +.|++.++++. |=.|.+|+++-. +.-.+.....+. -..-..-|++..
T Consensus 162 aHt------------yhiNSIS~--NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~n------mEeLteVITsaE 220 (433)
T KOG1354|consen 162 AHT------------YHINSISV--NSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPAN------MEELTEVITSAE 220 (433)
T ss_pred cce------------eEeeeeee--cCccceEeecc-ceeeeeccccccCCceeEEEccccC------HHHHHHHHhhhc
Confidence 566 88999999 88998888875 678999998632 211221111110 001124577788
Q ss_pred CCCCCccee-cceeeccceEEEEeecccccc-eeeEEe-----------ecCCCCCeeEEEeCCCCCEEEEEcCCeEEEE
Q 014005 178 NPPSFAHGY-HLEWTENMATKIANVGNSVHA-RCQKVY-----------PHAHDFNINSISNNSDCETFVSADDLRINLW 244 (432)
Q Consensus 178 ~~~~~~~~~-~~~~~~~~~v~i~d~~~~~~~-~~~~~~-----------~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lw 244 (432)
|+|....+. -.+. .|+|++.|++...-. ...+.+ ..+--..|..+.|+++|+++++-+--+|++|
T Consensus 221 Fhp~~cn~f~YSSS--KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~w 298 (433)
T KOG1354|consen 221 FHPHHCNVFVYSSS--KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLW 298 (433)
T ss_pred cCHhHccEEEEecC--CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEE
Confidence 888754333 2333 799999999842100 000111 0222356889999999999998877899999
Q ss_pred eCCCCCceeeEeecCCCC------cCCC--CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccc--c
Q 014005 245 NLEISDQCFNIVDMKPSN------MDDL--TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA--A 314 (432)
Q Consensus 245 d~~~~~~~~~~~~~~~~~------~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h--~ 314 (432)
|+....+++.++++...- +-.. --.-..++|+-++ ..+++|+..+.+++++...|.. +.+..+ .
T Consensus 299 D~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~~gsk-----~d~tl~asr 372 (433)
T KOG1354|consen 299 DLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFRVFNLARGSK-----EDFTLEASR 372 (433)
T ss_pred eccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc-ceEecccccceEEEecCCCCcc-----eeecccccc
Confidence 998677777766321110 0000 0123467899888 8999999999999999765543 222211 0
Q ss_pred cc--cCCc----c--------------ceeeeecceeEEEEcCCCCEEEEeeCCeEEEEe
Q 014005 315 ES--HGSK----S--------------FFTEIIASISDIKFANDGQHLLSRDYMNLKVFR 354 (432)
Q Consensus 315 ~~--~~~~----~--------------~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd 354 (432)
.. +... . ..-+....+...+|+|....+|.+..+.+++|.
T Consensus 373 ~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 373 KNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNNLYIFQ 432 (433)
T ss_pred cCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecCceEEec
Confidence 00 0000 0 000112245566889988888887667777763
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=5.1e-10 Score=107.79 Aligned_cols=114 Identities=16% Similarity=0.150 Sum_probs=95.7
Q ss_pred cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEE
Q 014005 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (432)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 293 (432)
.+|.+.|.++.++.+|+++++. +|.++++|+++. .+... ...-+|+..|+.++|+|+ .+++++.|.+.+
T Consensus 172 ~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s-~~~~~------~~~fgHsaRvw~~~~~~n---~i~t~gedctcr 241 (967)
T KOG0974|consen 172 KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS-REVLG------CTGFGHSARVWACCFLPN---RIITVGEDCTCR 241 (967)
T ss_pred cccCCceEEEEEccCCcEEEEEecCcceeeeeccc-ccccC------cccccccceeEEEEeccc---eeEEeccceEEE
Confidence 6999999999999999999999 999999999993 33322 123689999999999986 699999999999
Q ss_pred EEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 294 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
+|+... .. +..+.+| ....++.++..++...++++ .|+.+++||+
T Consensus 242 vW~~~~-~~----l~~y~~h------------~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 242 VWGVNG-TQ----LEVYDEH------------SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred EEeccc-ce----ehhhhhh------------hhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 997663 33 4677777 35689999999998888886 6699999999
No 258
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=1.3e-09 Score=98.42 Aligned_cols=164 Identities=9% Similarity=0.136 Sum_probs=114.6
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
+.++++.. ++-..+|++|+.+|.|..||.+............+ |
T Consensus 176 ~~lN~v~i--n~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~--------------v-------------------- 219 (703)
T KOG2321|consen 176 GELNVVSI--NEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS--------------V-------------------- 219 (703)
T ss_pred ccceeeee--cCccceEEecccCceEEEecchhhhhheeeecccc--------------c--------------------
Confidence 78999999 67778999999999999999987652222111100 0
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (432)
...+ . ......|+++.|+.+|-.+++| .+|.+.+||++ ..+++.+- -.+..-+|..
T Consensus 220 ------------~s~p---g-~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR-a~~pl~~k------dh~~e~pi~~ 276 (703)
T KOG2321|consen 220 ------------NSHP---G-GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR-ASKPLLVK------DHGYELPIKK 276 (703)
T ss_pred ------------CCCc---c-ccccCcceEEEecCCceeEEeeccCCcEEEEEcc-cCCceeec------ccCCccceee
Confidence 0000 0 1122359999999999999999 99999999999 55554431 1334457899
Q ss_pred EEEcCCCC-cEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeE
Q 014005 273 AEFHPIYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL 350 (432)
Q Consensus 273 ~~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i 350 (432)
+.|.+.+. +.+++. ....++|||-.+|+. ...++. ...++.+++-|++-+++++.+ ..+
T Consensus 277 l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~----~asiEp--------------t~~lND~C~~p~sGm~f~Ane~~~m 337 (703)
T KOG2321|consen 277 LDWQDTDQQNKVVSM-DKRILKIWDECTGKP----MASIEP--------------TSDLNDFCFVPGSGMFFTANESSKM 337 (703)
T ss_pred ecccccCCCceEEec-chHHhhhcccccCCc----eeeccc--------------cCCcCceeeecCCceEEEecCCCcc
Confidence 99977632 445443 456899999999886 455555 467999999999888888755 555
Q ss_pred EEEec
Q 014005 351 KVFRY 355 (432)
Q Consensus 351 ~iwd~ 355 (432)
..|=+
T Consensus 338 ~~yyi 342 (703)
T KOG2321|consen 338 HTYYI 342 (703)
T ss_pred eeEEc
Confidence 55544
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.15 E-value=3.6e-10 Score=114.34 Aligned_cols=184 Identities=13% Similarity=0.184 Sum_probs=138.4
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
..|.++.= +|...+.+||+.||.|++|....++........ .+..+..+.|+.+|.....+.. |
T Consensus 2209 ~~v~r~~s--Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~------------g~s~vtr~~f~~qGnk~~i~d~--d 2272 (2439)
T KOG1064|consen 2209 ENVRRMTS--HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA------------GNSRVTRSRFNHQGNKFGIVDG--D 2272 (2439)
T ss_pred CceeeecC--CCCCceEEecCCCceEEEEeccCCCeEEEeecc------------CcchhhhhhhcccCCceeeecc--C
Confidence 45666666 677889999999999999999877633332221 1267889999999888877777 9
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE----cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
|.+.+|... .++.... ..|......++|-. ..++++ +++.+.+||.........+ ...|.+.
T Consensus 2273 g~l~l~q~~----pk~~~s~-qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v-------~~~H~~g 2338 (2439)
T KOG1064|consen 2273 GDLSLWQAS----PKPYTSW-QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV-------HTCHDGG 2338 (2439)
T ss_pred CceeecccC----Ccceecc-ccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee-------eeecCCC
Confidence 999999986 3444455 67888888888876 445543 4789999998743332221 1689999
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-C
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 348 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~ 348 (432)
++++++-|.. ++|++|+.+|.|++||++..++ ...++. +. ...++++|+. |
T Consensus 2339 aT~l~~~P~~-qllisggr~G~v~l~D~rqrql----~h~~~~----------------------~~-~~~~f~~~ss~g 2390 (2439)
T KOG1064|consen 2339 ATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQL----RHTFQA----------------------LD-TREYFVTGSSEG 2390 (2439)
T ss_pred ceEEEEcCcc-eEEEecCCcCcEEEeehHHHHH----HHHhhh----------------------hh-hhheeeccCccc
Confidence 9999999999 9999999999999999997664 232221 33 4568888865 9
Q ss_pred eEEEEec
Q 014005 349 NLKVFRY 355 (432)
Q Consensus 349 ~i~iwd~ 355 (432)
.++||++
T Consensus 2391 ~ikIw~~ 2397 (2439)
T KOG1064|consen 2391 NIKIWRL 2397 (2439)
T ss_pred ceEEEEc
Confidence 9999999
No 260
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.15 E-value=1.3e-08 Score=83.72 Aligned_cols=199 Identities=13% Similarity=0.027 Sum_probs=133.4
Q ss_pred EEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccce
Q 014005 129 MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHAR 208 (432)
Q Consensus 129 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~ 208 (432)
.+..++.|.++++.++..+..+.....+ +-.+..+++++++.+++..+. ...|-.|.+... ...
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~-------------~~~~ns~~~snd~~~~~~Vgd--s~~Vf~y~id~~-sey 193 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQ-------------NLTQNSLHYSNDPSWGSSVGD--SRRVFRYAIDDE-SEY 193 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeecc-------------ccceeeeEEcCCCceEEEecC--CCcceEEEeCCc-cce
Confidence 4777889999999999876544332221 123678899999999998887 778888887754 233
Q ss_pred eeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCC-cEEEEE
Q 014005 209 CQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC-NLLAYS 286 (432)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~ 286 (432)
.+++......+.=.+..|+.....+|++ .||++.+||++....+.... ..+...|.+.++.+.|+|.|. .+|+..
T Consensus 194 ~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~---sstrp~hnGa~R~c~Fsl~g~lDLLf~s 270 (344)
T KOG4532|consen 194 IENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI---SSTRPHHNGAFRVCRFSLYGLLDLLFIS 270 (344)
T ss_pred eeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh---cccCCCCCCceEEEEecCCCcceEEEEe
Confidence 3333324455556688899999999999 99999999999555544332 223356899999999998764 456666
Q ss_pred eCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 287 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
-.-+.+.+.|+|+++.+.. +..... . ++......|..-.|+.++.-+.+.+.-.+.=|++
T Consensus 271 Ehfs~~hv~D~R~~~~~q~-I~i~~d----~----~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni 330 (344)
T KOG4532|consen 271 EHFSRVHVVDTRNYVNHQV-IVIPDD----V----ERKHNTQHIFGTNFNNENESNDVKNELQGAEYNI 330 (344)
T ss_pred cCcceEEEEEcccCceeeE-EecCcc----c----cccccccccccccccCCCcccccccchhhheeec
Confidence 6678999999999876421 111111 0 0000123477788888877666655444555555
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.15 E-value=1e-07 Score=85.22 Aligned_cols=249 Identities=10% Similarity=0.086 Sum_probs=136.2
Q ss_pred EcCCCCEEEEecc----------cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecC-Cccccccc
Q 014005 40 FDKTGDYLAVGDR----------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFDYLK 108 (432)
Q Consensus 40 fsp~g~~l~t~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h-~~~~~~~~ 108 (432)
+||+|+.|.++.. +..|.+||..+.+.. ..+..- .|++.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~---------------------------~~i~~p~~p~~~--- 102 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI---------------------------ADIELPEGPRFL--- 102 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE---------------------------eEEccCCCchhh---
Confidence 8999998866654 679999999987643 222210 00000
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEe-C-CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILST-N-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
....-..+++ +|||+++++.. . +..|.+.|+.+++........... .-... ....+.+
T Consensus 103 ---~~~~~~~~~l--s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~--------------~vy~t-~e~~~~~ 162 (352)
T TIGR02658 103 ---VGTYPWMTSL--TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY--------------HIFPT-ANDTFFM 162 (352)
T ss_pred ---ccCccceEEE--CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc--------------EEEEe-cCCccEE
Confidence 0022335677 89999988775 3 789999999998854432221100 00111 1111111
Q ss_pred cceeeccceEEEEeeccccc--ceeeEEeecCCCCCeeE-EEeCC-CCCEEEEEcCCeEEEEeCCCC----CceeeEeec
Q 014005 187 HLEWTENMATKIANVGNSVH--ARCQKVYPHAHDFNINS-ISNNS-DCETFVSADDLRINLWNLEIS----DQCFNIVDM 258 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~--~~~~~~~~~~~~~~i~~-~~~~~-~~~~l~~~~d~~i~lwd~~~~----~~~~~~~~~ 258 (432)
.+. ||......+..... ......+ ......+.. -.+.+ +|+.+.+...|+|.+.|+... ...+..+..
T Consensus 163 ~~~---Dg~~~~v~~d~~g~~~~~~~~vf-~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR02658 163 HCR---DGSLAKVGYGTKGNPKIKPTEVF-HPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTE 238 (352)
T ss_pred Eee---cCceEEEEecCCCceEEeeeeee-cCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccc
Confidence 111 33222222221101 0011111 110000000 03345 888888884499999997521 112222100
Q ss_pred CCCCcCCCCcceEEEEEcCCCCcEEEEEe----------CCCeEEEEEccccccccccceeecccccccCCccceeeeec
Q 014005 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (432)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 328 (432)
....-.-....+.-++++|++ +.+.... ..+.|.++|..+++. +..+.. ..
T Consensus 239 ~~~~~~wrP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv----i~~i~v--------------G~ 299 (352)
T TIGR02658 239 AEKADGWRPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKR----LRKIEL--------------GH 299 (352)
T ss_pred cccccccCCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeE----EEEEeC--------------CC
Confidence 000001123444559999999 6555532 225899999999886 455554 36
Q ss_pred ceeEEEEcCCCC-EEEEe--eCCeEEEEec---CcceeE
Q 014005 329 SISDIKFANDGQ-HLLSR--DYMNLKVFRY---EPVMTL 361 (432)
Q Consensus 329 ~v~~~~~s~dg~-~l~s~--~~~~i~iwd~---~~~~~~ 361 (432)
.+..++++|||+ +|.+. ..+.|.+.|. +.++++
T Consensus 300 ~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 300 EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 889999999999 77654 3489999999 566666
No 262
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.14 E-value=3.5e-10 Score=104.97 Aligned_cols=209 Identities=19% Similarity=0.231 Sum_probs=141.5
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
.++.+++.+..+.. +|.|+-++.++.-| +.+.|+...-.....-+...+ ..+....|++....-.-
T Consensus 19 lsl~v~~~~~a~si--~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tp-----------w~vad~qws~h~a~~~w 84 (1081)
T KOG0309|consen 19 LSLKVDGGFNAVSI--NPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITP-----------WQVADVQWSPHPAKPYW 84 (1081)
T ss_pred eEEEecCcccceee--ccccchhhhhhhcC-eEEEeccCCCCCceeeeccCc-----------chhcceecccCCCCcee
Confidence 34445578889999 78899999998877 555576543211111111222 56777788776543333
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCE-EEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
........-.+|++...........+ .+|...|+.+-|+|+.+- +++. .|..+..||++.....+..+ ..
T Consensus 85 iVsts~qkaiiwnlA~ss~~aIef~l-hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-------~~ 156 (1081)
T KOG0309|consen 85 IVSTSNQKAIIWNLAKSSSNAIEFVL-HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-------SS 156 (1081)
T ss_pred EEecCcchhhhhhhhcCCccceEEEE-ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-------ec
Confidence 22222556668888765444444444 899999999999998654 5566 89999999999777777655 34
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC--CCEEE
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLL 343 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l~ 343 (432)
-...-..++|+...+..+ +.+..+.|++||++.|..+ +..+++| ...|..+.|..- ++.+-
T Consensus 157 w~s~asqVkwnyk~p~vl-asshg~~i~vwd~r~gs~p---l~s~K~~-------------vs~vn~~~fnr~~~s~~~s 219 (1081)
T KOG0309|consen 157 WRSAASQVKWNYKDPNVL-ASSHGNDIFVWDLRKGSTP---LCSLKGH-------------VSSVNSIDFNRFKYSEIMS 219 (1081)
T ss_pred ccccCceeeecccCcchh-hhccCCceEEEeccCCCcc---eEEeccc-------------ceeeehHHHhhhhhhhhcc
Confidence 445567899998774555 4566778999999988754 5677776 667777777653 44444
Q ss_pred EeeCCeEEEEec
Q 014005 344 SRDYMNLKVFRY 355 (432)
Q Consensus 344 s~~~~~i~iwd~ 355 (432)
+..|++|++||.
T Consensus 220 ~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 220 SSNDGTVKFWDY 231 (1081)
T ss_pred cCCCCceeeecc
Confidence 456688888887
No 263
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=8.4e-10 Score=106.34 Aligned_cols=148 Identities=14% Similarity=0.255 Sum_probs=119.5
Q ss_pred EEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeE
Q 014005 39 EFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR 118 (432)
Q Consensus 39 ~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 118 (432)
.++++.-++++|+.-+.|.+|+....+.. ..+.||+ +.|.+
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p---------------------------~~l~GHe------------G~iF~ 180 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDNKP---------------------------IRLKGHE------------GSIFS 180 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccCCc---------------------------ceecccC------------CceEE
Confidence 34566668899999999999998743321 2578999 99999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEE
Q 014005 119 VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI 198 (432)
Q Consensus 119 l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i 198 (432)
+.| +.||+++++.|.|+++++|++++.+....
T Consensus 181 i~~--s~dg~~i~s~SdDRsiRlW~i~s~~~~~~---------------------------------------------- 212 (967)
T KOG0974|consen 181 IVT--SLDGRYIASVSDDRSIRLWPIDSREVLGC---------------------------------------------- 212 (967)
T ss_pred EEE--ccCCcEEEEEecCcceeeeecccccccCc----------------------------------------------
Confidence 999 89999999999999999999998762110
Q ss_pred EeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC-cceEEEEEc
Q 014005 199 ANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVITSAEFH 276 (432)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~ 276 (432)
.- -+|..++..+.+.|+ .++++ .|.++++|+.+ +..+..+ ..|. ..|+.++.+
T Consensus 213 ------------~~--fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y-------~~h~g~~iw~~~~~ 267 (967)
T KOG0974|consen 213 ------------TG--FGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVY-------DEHSGKGIWKIAVP 267 (967)
T ss_pred ------------cc--ccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehhh-------hhhhhcceeEEEEc
Confidence 00 478999999999998 77777 99999999877 4445444 5564 469999999
Q ss_pred CCCCcEEEEEeCCCeEEEEEccc
Q 014005 277 PIYCNLLAYSSSRGFVRLVDMRQ 299 (432)
Q Consensus 277 p~~~~~l~~~~~dg~i~iwd~~~ 299 (432)
+.. ...++++.|+.+++||+..
T Consensus 268 ~~~-~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 268 IGV-IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred CCc-eEEEeeccCcchhhhhhhc
Confidence 988 8999999999999999874
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.11 E-value=6e-09 Score=86.69 Aligned_cols=207 Identities=12% Similarity=0.121 Sum_probs=133.9
Q ss_pred cceeEEEEEEc-CCCC-EEEEEeCCCeEEEEEccCccee-eeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 114 EKINRVRWCAA-PNGS-MFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 114 ~~v~~l~~~~s-~~~~-~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
..+..+.|+.- .+|. .++-+..+|.|.++........ .+..+.... .......++.|++.+..++.+..
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k--------i~~~~~lslD~~~~~~~i~vs~s 141 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKK--------ISVVEALSLDISTSGTKIFVSDS 141 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhh--------hhheeeeEEEeeccCceEEEEcC
Confidence 45667777532 2344 4566777899999987544311 121111111 00012345667777777766665
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
+|.+.+-+.... .-+..+.+ +.|...+....|+.... .+.+| +|+.+..||++.++..+.. ...-|..
T Consensus 142 --~G~~~~v~~t~~-~le~vq~w-k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~------n~kvH~~ 211 (339)
T KOG0280|consen 142 --RGSISGVYETEM-VLEKVQTW-KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH------NSKVHTS 211 (339)
T ss_pred --CCcEEEEeccee-eeeecccc-cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee------cceeeec
Confidence 666664443311 11222355 78999999999987654 55688 9999999999966654432 2367888
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC--CCEEEEee
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRD 346 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l~s~~ 346 (432)
.|.++.-+|..+.++++|+.|-.|++||.|.... ..+.+ + ..+.|+.+.++|. ++.|+++-
T Consensus 212 GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k-----Pl~~~-~-----------v~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 212 GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK-----PLFKA-K-----------VGGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred ceEEEecCCCCCceEEEeccccceeeeehhcccC-----ccccC-c-----------cccceEEEEecchhhhHHHHHHH
Confidence 9999999987779999999999999999996443 22222 1 1478999999996 45566665
Q ss_pred CCeEEEEec
Q 014005 347 YMNLKVFRY 355 (432)
Q Consensus 347 ~~~i~iwd~ 355 (432)
.+-.+|-++
T Consensus 275 h~G~ki~~~ 283 (339)
T KOG0280|consen 275 HNGAKILDS 283 (339)
T ss_pred hcCceEEEe
Confidence 555666666
No 265
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.10 E-value=6.4e-08 Score=85.91 Aligned_cols=118 Identities=11% Similarity=0.130 Sum_probs=91.4
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCC-eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDK-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
..|.-..+ ..+++-++.|..|| .+-++|..+++.+++..-- +.|.++..++++++++.+..
T Consensus 360 ~~VrY~r~--~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l--------------g~I~av~vs~dGK~~vvaNd-- 421 (668)
T COG4946 360 GGVRYRRI--QVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL--------------GNIEAVKVSPDGKKVVVAND-- 421 (668)
T ss_pred CceEEEEE--ccCCcceEEeccCCceEEEEecCCceEEEeeCCc--------------cceEEEEEcCCCcEEEEEcC--
Confidence 66777777 56777899999999 9999999999876654332 78999999999999988876
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC----CeEEEEeCCCCCceee
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFN 254 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d----~~i~lwd~~~~~~~~~ 254 (432)
...+-+.|++ ++.....- +...+-|+.++|+|+++++|-+ -+ ..|+++|+. +++...
T Consensus 422 r~el~vidid---ngnv~~id-kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~-~~Kiy~ 483 (668)
T COG4946 422 RFELWVIDID---NGNVRLID-KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD-GGKIYD 483 (668)
T ss_pred ceEEEEEEec---CCCeeEec-ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC-CCeEEE
Confidence 6677777887 44443333 5567789999999999999987 54 478999998 444443
No 266
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.09 E-value=4e-09 Score=87.74 Aligned_cols=200 Identities=12% Similarity=0.124 Sum_probs=133.2
Q ss_pred EEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhc
Q 014005 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (432)
Q Consensus 35 V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (432)
-.++.|++.|..++++..+|.+.+-+..... .+..+.++.|+ -
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-------------------------le~vq~wk~He------------~ 166 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMV-------------------------LEKVQTWKVHE------------F 166 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceee-------------------------eeecccccccc------------e
Confidence 3567788888888888888888855544432 22335788898 7
Q ss_pred ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc
Q 014005 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (432)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 194 (432)
..+..+|. ..+.+.+.+|+.|+.+..||++..+ +.
T Consensus 167 E~Wta~f~-~~~pnlvytGgDD~~l~~~D~R~p~-~~------------------------------------------- 201 (339)
T KOG0280|consen 167 EAWTAKFS-DKEPNLVYTGGDDGSLSCWDIRIPK-TF------------------------------------------- 201 (339)
T ss_pred eeeeeecc-cCCCceEEecCCCceEEEEEecCCc-ce-------------------------------------------
Confidence 78888884 3455789999999999999998332 11
Q ss_pred eEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (432)
Q Consensus 195 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (432)
+|.-. .-|...|.+|.-+| .+.++++| .|..|++||.++.++++.. ....+.|+.
T Consensus 202 ---i~~n~------------kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~--------~~v~GGVWR 258 (339)
T KOG0280|consen 202 ---IWHNS------------KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK--------AKVGGGVWR 258 (339)
T ss_pred ---eeecc------------eeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc--------CccccceEE
Confidence 22111 45777888887776 57789999 9999999999977776652 344578999
Q ss_pred EEEcCCCC-cEEEEEeCCCeEEEEEccccccccc-cceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC--C
Q 014005 273 AEFHPIYC-NLLAYSSSRGFVRLVDMRQSALCDH-SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--M 348 (432)
Q Consensus 273 ~~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~--~ 348 (432)
+..+|.-. .+|+++-.+ -.+|-++..+....+ .....+.| .+-+..-.|.....+||+++- +
T Consensus 259 i~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~e~~~~~~s~~~h-------------dSl~YG~DWd~~~~~lATCsFYDk 324 (339)
T KOG0280|consen 259 IKHHPEIFHRLLAACMHN-GAKILDSSDKVLEFQIVLPSDKIH-------------DSLCYGGDWDSKDSFLATCSFYDK 324 (339)
T ss_pred EEecchhhhHHHHHHHhc-CceEEEecccccchheeeeccccc-------------cceeeccccccccceeeeeecccc
Confidence 99999752 334444444 467777775442100 12223333 556666667544557888642 4
Q ss_pred eEE-EE
Q 014005 349 NLK-VF 353 (432)
Q Consensus 349 ~i~-iw 353 (432)
.++ +|
T Consensus 325 ~~~~~W 330 (339)
T KOG0280|consen 325 KIRQLW 330 (339)
T ss_pred ceeeee
Confidence 433 55
No 267
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.06 E-value=1.9e-09 Score=88.09 Aligned_cols=202 Identities=10% Similarity=0.021 Sum_probs=114.7
Q ss_pred CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee---eccceEEEEeec
Q 014005 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW---TENMATKIANVG 202 (432)
Q Consensus 126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~v~i~d~~ 202 (432)
-+..++++..||.+.+++.+.-. .......... ..-.+......+.++.++.. .+-+..+.|+++
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~-~~~~~i~~~~-----------~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~ 167 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDL-ALMSRIPSIH-----------SGSASRKICRHGNSILSGGCGNWNAQDNFYANTLD 167 (319)
T ss_pred cCCceEecCCCceEEEEechHHH-hhhhhccccc-----------ccccccceeecccEEecCCcceEeeccceeeeccc
Confidence 35678999999999999876421 1000000000 11112223334444544432 123456666665
Q ss_pred ccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCC
Q 014005 203 NSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 280 (432)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 280 (432)
.. +....- ......+.+++-+|..+ .+++| +||.+.+||.+.-..+.. .+..|...++.+-|+|..+
T Consensus 168 p~---~t~~~~-~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S-------~l~ahk~~i~eV~FHpk~p 236 (319)
T KOG4714|consen 168 PI---KTLIPS-KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS-------LLKAHKAEIWEVHFHPKNP 236 (319)
T ss_pred cc---cccccc-ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH-------HHHHhhhhhhheeccCCCc
Confidence 21 111111 12233499999999655 45577 999999999994322333 2478999999999999988
Q ss_pred cEEEEEeCCCeEEEEEccccccccccceeecccccc----cC-----CccceeeeecceeEEEEcCCCCEEEEeeC-CeE
Q 014005 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES----HG-----SKSFFTEIIASISDIKFANDGQHLLSRDY-MNL 350 (432)
Q Consensus 281 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~----~~-----~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i 350 (432)
..|+++++||.+..||..+.-+.- -..-..|... +. ....++.....|+++.. -|..|++|+| +.|
T Consensus 237 ~~Lft~sedGslw~wdas~~~l~i--~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaI 312 (319)
T KOG4714|consen 237 EHLFTCSEDGSLWHWDASTTFLSI--SNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAI 312 (319)
T ss_pred hheeEecCCCcEEEEcCCCceEEe--cCccccccccccCCcccceEeeeccccccceeeeeeec--cCceEEeccccceE
Confidence 999999999999999977421100 0000111000 00 00122222334444333 3778999877 888
Q ss_pred EEEe
Q 014005 351 KVFR 354 (432)
Q Consensus 351 ~iwd 354 (432)
++.+
T Consensus 313 yl~~ 316 (319)
T KOG4714|consen 313 YLTR 316 (319)
T ss_pred EEec
Confidence 8875
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.06 E-value=6.4e-08 Score=86.64 Aligned_cols=234 Identities=12% Similarity=0.183 Sum_probs=145.2
Q ss_pred cEEEEEEcCCCCEEEEecccc---------------eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeee
Q 014005 34 IVSAIEFDKTGDYLAVGDRGG---------------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ 98 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg---------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 98 (432)
.|.-+.|+|.++||.+=+..+ .+.+||+.++..+ ..+.
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv---------------------------~sf~ 125 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIV---------------------------FSFN 125 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeE---------------------------eecc
Confidence 578899999999999865433 4889998887643 3343
Q ss_pred cCCccccccchhhhhcc--ee-EEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccccc
Q 014005 99 SHEPEFDYLKSLEIEEK--IN-RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (432)
Q Consensus 99 ~h~~~~~~~~~~~~~~~--v~-~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (432)
+.. .+ .+ -+.| +-+..+.|-- -...+.++++ ++............ ..+..
T Consensus 126 ~~~------------q~~~~Wp~~k~--s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~-----------~gi~d 178 (561)
T COG5354 126 GIS------------QPYLGWPVLKF--SIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRP-----------VGILD 178 (561)
T ss_pred ccC------------Ccccccceeee--eecchhhhhh-ccCeEEEEec-CCccccCchhhccc-----------cceee
Confidence 332 22 33 5677 5666665544 2356899997 44433222222222 56777
Q ss_pred ccCCCCCcceecceee-----ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-----------C
Q 014005 176 EHNPPSFAHGYHLEWT-----ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-----------D 238 (432)
Q Consensus 176 ~~~~~~~~~~~~~~~~-----~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-----------d 238 (432)
..++|.+..-..+... ..+.+++|.+...........+ . -.=..+.|++.|+++++- . .
T Consensus 179 FsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf-k---~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfge 254 (561)
T COG5354 179 FSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF-K---VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGE 254 (561)
T ss_pred EEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE-e---ecccEEEEecCCceEEEEEEEeeecccceecc
Confidence 8888875333322222 2568889988733222222222 1 122367899999887742 1 3
Q ss_pred CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEE--eCCCeEEEEEccccccccccceeecccccc
Q 014005 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS--SSRGFVRLVDMRQSALCDHSARILRDAAES 316 (432)
Q Consensus 239 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~ 316 (432)
..++|++++ +..+..- ....++|...+|.|.+ +.|++. -.+..+.++|++.. + ...+.
T Consensus 255 snLyl~~~~--e~~i~V~-------~~~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s~~~lr~N-l----~~~~P----- 314 (561)
T COG5354 255 SNLYLLRIT--ERSIPVE-------KDLKDPVHDFTWEPLS-SRFAVISGYMPASVSVFDLRGN-L----RFYFP----- 314 (561)
T ss_pred ceEEEEeec--cccccee-------ccccccceeeeecccC-CceeEEecccccceeecccccc-e----EEecC-----
Confidence 457777777 3333321 2557889999999998 555554 47889999999954 3 22222
Q ss_pred cCCccceeeeecceeEEEEcCCCCEEEE-e-eC--CeEEEEec
Q 014005 317 HGSKSFFTEIIASISDIKFANDGQHLLS-R-DY--MNLKVFRY 355 (432)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~-~~--~~i~iwd~ 355 (432)
...=+.+.|||.++|++. | +. |.+-+||.
T Consensus 315 ----------e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 315 ----------EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred ----------CcccccccccCcccEEEEecCCccccceEEecc
Confidence 234567889999999887 4 22 99999999
No 269
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=1.2e-09 Score=98.42 Aligned_cols=177 Identities=24% Similarity=0.315 Sum_probs=118.5
Q ss_pred eeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccc
Q 014005 94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (432)
Q Consensus 94 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 173 (432)
+..+.||+ ..|..+.- -.+.+.+++++.|++|++|.++...
T Consensus 728 L~nf~GH~------------~~iRai~A--idNENSFiSASkDKTVKLWSik~Eg------------------------- 768 (1034)
T KOG4190|consen 728 LCNFTGHQ------------EKIRAIAA--IDNENSFISASKDKTVKLWSIKPEG------------------------- 768 (1034)
T ss_pred eecccCcH------------HHhHHHHh--cccccceeeccCCceEEEEEecccc-------------------------
Confidence 35678888 77887776 4566789999999999999987432
Q ss_pred ccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCcee
Q 014005 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCF 253 (432)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~ 253 (432)
|+. .+..|..++ ..|+..|+++.|-.+.+++++. ||.|.+||.- -+..+
T Consensus 769 -------------------D~~---------~tsaCQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPF-igr~L 817 (1034)
T KOG4190|consen 769 -------------------DEI---------GTSACQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPF-IGRLL 817 (1034)
T ss_pred -------------------Ccc---------ccceeeeEh-hhccCcccceeeeeccceeeec-cCcceeeccc-ccchh
Confidence 000 045577777 8999999999999988877765 8889999986 34333
Q ss_pred eEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEE
Q 014005 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (432)
Q Consensus 254 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~ 333 (432)
....- ....+....|.++.-- +..-++|.++...+|+++|.|.++- ...++- .+.+.+ ..-+.++
T Consensus 818 aq~~d--apk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~----~~E~kV-cna~~P-------na~~R~i 882 (1034)
T KOG4190|consen 818 AQMED--APKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEW----TCELKV-CNAPGP-------NALTRAI 882 (1034)
T ss_pred Hhhhc--CcccCCCceeEecccC-cchheeeeccchhhheeeecccccc----eeeEEe-ccCCCC-------chheeEE
Confidence 32100 0012222334333211 2213344447889999999998764 233332 222222 4568899
Q ss_pred EEcCCCCEEEEe-eCCeEEEEec
Q 014005 334 KFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 334 ~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
+..+.|.++|.+ +.|+|.+.|.
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDa 905 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDA 905 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEec
Confidence 999999999998 6699999999
No 270
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=6.5e-09 Score=91.39 Aligned_cols=269 Identities=13% Similarity=0.118 Sum_probs=172.2
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
.-|.+.|+.+.- .-.+++.+++.||.++.|.-..-. -.+++..+..|.
T Consensus 6 ymhrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~is------------------------GvEfVKhFraHL------- 53 (558)
T KOG0882|consen 6 YMHRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRIS------------------------GVEFVKHFRAHL------- 53 (558)
T ss_pred hcccceeeeEee-ehhheEEeeecchhhhhcCCCCcc------------------------ceeehhhhHHHH-------
Confidence 457888888754 345789999999999999854422 123445667777
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeC-CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC-Cccee
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS-FAHGY 186 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~ 186 (432)
..|.+++. +.++.++.|.+. |..++++|++.-.......+...+ +.+ +...++. ..-++
T Consensus 54 -----~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-----------g~a-~wv~skGd~~s~I 114 (558)
T KOG0882|consen 54 -----GVILSLAV--SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-----------GFA-EWVTSKGDKISLI 114 (558)
T ss_pred -----HHHHhhhc--cccceeEeeccCcccceeEEEeeccchhhhcccccCC-----------Cce-EEecCCCCeeeeE
Confidence 88888888 789989999777 999999999876533222222222 111 1111221 11222
Q ss_pred cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceee---EeecCCC-
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN---IVDMKPS- 261 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~---~~~~~~~- 261 (432)
+.+...++.+.++|-... ......+..-|..+|.++.+++.+..+++. ..|.|.-|..+..-+..+ .+..+..
T Consensus 115 AVs~~~sg~i~VvD~~~d--~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT 192 (558)
T KOG0882|consen 115 AVSLFKSGKIFVVDGFGD--FCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET 192 (558)
T ss_pred EeecccCCCcEEECCcCC--cCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccc
Confidence 223333778889887743 222333336789999999999999999999 899999998872111100 1111111
Q ss_pred ---CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccc----cccCCc--------------
Q 014005 262 ---NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA----ESHGSK-------------- 320 (432)
Q Consensus 262 ---~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~----~~~~~~-------------- 320 (432)
.+........++.|+|++ ..+++-+.|..|++++.++|++. +.+..-. ..+...
T Consensus 193 dLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklv----qeiDE~~t~~~~q~ks~y~l~~VelgRRmav 267 (558)
T KOG0882|consen 193 DLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLV----QEIDEVLTDAQYQPKSPYGLMHVELGRRMAV 267 (558)
T ss_pred hhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhh----hhhhccchhhhhccccccccceeehhhhhhH
Confidence 112234567899999999 89999999999999999998863 3333210 000000
Q ss_pred -cceeee-ecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 321 -SFFTEI-IASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 321 -~~~~~~-~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
..+..+ ...-+.+.|...|.+|+-|+-=-|++.++
T Consensus 268 erelek~~~~~~~~~~fdes~~flly~t~~gikvin~ 304 (558)
T KOG0882|consen 268 ERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINL 304 (558)
T ss_pred HhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEe
Confidence 001111 12345678999999999887766888888
No 271
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.02 E-value=3.3e-07 Score=93.09 Aligned_cols=292 Identities=14% Similarity=0.165 Sum_probs=163.9
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccc----ccc-ccccCCcceeeeeecCCccc--
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQM----DFT-STSHPEYRYKTEFQSHEPEF-- 104 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~p~~~~~~~~~~h~~~~-- 104 (432)
...|.|++||||++.||..+.++++.+.+.+-.- + ....+...+ ..+ +- ..+.-++|+|...+.
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~-i-----~E~~l~~~~~~~~~~VsVG---WGkKeTQF~Gs~gK~aa 190 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDP-I-----SEVPLDSDDFGESKHVSVG---WGKKETQFHGSAGKAAA 190 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE-E-----EEeecCccccCCCceeeec---cCcccCccCcchhhhhh
Confidence 4589999999999999999989998876532110 0 000000000 000 00 001111222211000
Q ss_pred ----c-cc-----chhhhhcceeEEEEEEcCCCCEEEEEeC------CCeEEEEEccCcceeeeeecCCCCccccccccc
Q 014005 105 ----D-YL-----KSLEIEEKINRVRWCAAPNGSMFILSTN------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (432)
Q Consensus 105 ----~-~~-----~~~~~~~~v~~l~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (432)
+ .+ ..+..+..-..|+| ..||++||+.+. -+.+++|+-+ |.+....+-
T Consensus 191 ~~~~~p~~~~~d~~~~s~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~------------- 254 (928)
T PF04762_consen 191 RQLRDPTVPKVDEGKLSWDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP------------- 254 (928)
T ss_pred hhccCCCCCccccCccccCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc-------------
Confidence 0 00 00001255678999 999999999864 2578999866 443333221
Q ss_pred cccccccccCCCCCcceecceeec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 014005 169 AEKNFMNEHNPPSFAHGYHLEWTE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL 246 (432)
Q Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~ 246 (432)
..+--..++|.|+|.++++..... ...|.+|..+.-.-+...-.+ ......|..+.|++++..||.. .|. |.+|-.
T Consensus 255 v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~ 332 (928)
T PF04762_consen 255 VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRF-DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR 332 (928)
T ss_pred CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCC-CCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence 113345689999999999887644 336666665432222211111 2456689999999999999998 555 999988
Q ss_pred CCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc----ccccc----cccceeeccc-----
Q 014005 247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR----QSALC----DHSARILRDA----- 313 (432)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~----~~~~~----~~~~~~~~~h----- 313 (432)
.+.--.++.- + . -.....+..+.|+|..+..|...+.+|.+..++.. .+... ........|.
T Consensus 333 ~NYHWYLKqe-i---~-~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllT 407 (928)
T PF04762_consen 333 SNYHWYLKQE-I---R-FSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLT 407 (928)
T ss_pred eCCEEEEEEE-E---E-ccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEe
Confidence 7332222211 0 0 12223345599999887778888887777666543 11100 0001111111
Q ss_pred ----ccccCCc-cceeeeecceeEEEEcCCCCEEEE-eeCCeEEEEec
Q 014005 314 ----AESHGSK-SFFTEIIASISDIKFANDGQHLLS-RDYMNLKVFRY 355 (432)
Q Consensus 314 ----~~~~~~~-~~~~~~~~~v~~~~~s~dg~~l~s-~~~~~i~iwd~ 355 (432)
..-|.+- ..--....+|.+++|++++..+|+ -++|.+.+|..
T Consensus 408 pf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 408 PFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred cccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 1112211 111223578999999999876666 46699999996
No 272
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=2e-07 Score=86.77 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=62.1
Q ss_pred EEEeCCCCCEEEEE--cCC--eEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC---------
Q 014005 223 SISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------- 289 (432)
Q Consensus 223 ~~~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------- 289 (432)
...|+|||+.++.. ..+ .|++.|+. ++...++. ..+.. ...|+|+| +.|+.....
T Consensus 281 ~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-~g~~~rlt------~~g~~----~~~~SPDG-~~Ia~~~~~~~~~~~~~~ 348 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRLGYPNIFMKKLN-SGSVEQVV------FHGKN----NSSVSTYK-NYIVYSSRETNNEFGKNT 348 (419)
T ss_pred ccEECCCCCEEEEEECCCCCceEEEEECC-CCCeEeCc------cCCCc----CceECCCC-CEEEEEEcCCCcccCCCC
Confidence 34799999887755 333 67777777 44432321 11211 24899999 666665533
Q ss_pred CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eC---CeEEEEec
Q 014005 290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY---MNLKVFRY 355 (432)
Q Consensus 290 g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~---~~i~iwd~ 355 (432)
..|.+.|+.++.. +.+... .......|+|||+.|+-. .. ..+.+.++
T Consensus 349 ~~I~v~d~~~g~~-----~~LT~~--------------~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 349 FNLYLISTNSDYI-----RRLTAN--------------GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred cEEEEEECCCCCe-----EECCCC--------------CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence 3688888887763 444431 223358899999988753 22 34556666
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.02 E-value=2.7e-07 Score=95.38 Aligned_cols=225 Identities=8% Similarity=0.068 Sum_probs=127.8
Q ss_pred ceeEEEEEEcCCCCEEEEEe-CCCeEEEEEccCcceeeeeecCCCC-cccc--ccccccccccccccCCCCC-cceecce
Q 014005 115 KINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFP-FVSS--ENTLLAEKNFMNEHNPPSF-AHGYHLE 189 (432)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~i~~~~~~~~~-~~~~~~~ 189 (432)
....+++ .++++.|+++. ..+.|+++|..++....+....... .... ......-..-..+++++++ ...++..
T Consensus 625 ~P~GIav--d~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 625 RPQGLAY--NAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred CCcEEEE--eCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 4578888 77777766664 4567999998877654443211000 0000 0000000122457778744 3334433
Q ss_pred eeccceEEEEeecccccceeeEEee--------cC------CCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCcee
Q 014005 190 WTENMATKIANVGNSVHARCQKVYP--------HA------HDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCF 253 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~--------~~------~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~ 253 (432)
. ++.|++||.... ... .+. .+ .......++++|+++.+.++ .++.|++||++. +...
T Consensus 703 ~--~~~I~v~d~~~g---~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t-g~~~ 775 (1057)
T PLN02919 703 G--QHQIWEYNISDG---VTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT-GGSR 775 (1057)
T ss_pred C--CCeEEEEECCCC---eEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC-CcEE
Confidence 3 678888887632 211 110 00 11345679999999866655 689999999983 3221
Q ss_pred eEeecCC---C---CcC--------CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccc--cc
Q 014005 254 NIVDMKP---S---NMD--------DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE--SH 317 (432)
Q Consensus 254 ~~~~~~~---~---~~~--------~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~--~~ 317 (432)
......+ . .+. ..-.....++++++| +++++-..+++|++||..++.. ..+.+... ..
T Consensus 776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v-----~tiaG~G~~G~~ 849 (1057)
T PLN02919 776 LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRV-----TTLAGTGKAGFK 849 (1057)
T ss_pred EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeE-----EEEeccCCcCCC
Confidence 1110000 0 000 011235689999999 8888888999999999987653 33332100 00
Q ss_pred CCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005 318 GSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
... ...........++++++|+++++. .+++|++||+
T Consensus 850 dG~-~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 850 DGK-ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred CCc-ccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 000 011122467789999999977775 4499999999
No 274
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.01 E-value=4.9e-09 Score=90.96 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=105.4
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCCCccccccccccccccccccCCCCCcceecceee-cc
Q 014005 117 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT-EN 193 (432)
Q Consensus 117 ~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~ 193 (432)
..+.. +++++++|.+..+....+++..... .+....... + ..-..+.+.........+... ..
T Consensus 66 ~~~~~--s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~-----------~~~~ai~~~~~~~sv~v~dkagD~ 131 (390)
T KOG3914|consen 66 ALVLT--SDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-P-----------KRPTAISFIREDTSVLVADKAGDV 131 (390)
T ss_pred ccccc--CCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-c-----------cCcceeeeeeccceEEEEeecCCc
Confidence 34445 7888999999888887788776443 111111110 0 122233333333333332221 13
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (432)
..+.+|... .+.+... .+|-+.+..++++||+++++++ .|..|++-... .--.+..+ ..||..-|..
T Consensus 132 ~~~di~s~~---~~~~~~~--lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp-a~f~Iesf------clGH~eFVS~ 199 (390)
T KOG3914|consen 132 YSFDILSAD---SGRCEPI--LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP-ATFVIESF------CLGHKEFVST 199 (390)
T ss_pred eeeeeeccc---ccCcchh--hhhhhhhheeeecCCCCEEEEecCCceEEEEecC-cccchhhh------ccccHhheee
Confidence 345555444 3444444 5999999999999999999999 99999998777 33334433 3689999999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
++.-++ +.|++||.|+++++||+++|+.
T Consensus 200 isl~~~--~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 200 ISLTDN--YLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred eeeccC--ceeeecCCCCcEEEEecccCCc
Confidence 999987 5699999999999999999986
No 275
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.99 E-value=5.5e-08 Score=88.57 Aligned_cols=179 Identities=15% Similarity=0.142 Sum_probs=125.1
Q ss_pred CCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeeccc
Q 014005 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (432)
Q Consensus 125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~ 204 (432)
|...++|....||.+++|+...+++..-..-.. .....+.-..|.+...
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~-------------------------------~~s~t~~~~~w~L~~~ 51 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA-------------------------------SLSGTCTYTKWGLSAD 51 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccch-------------------------------hccCcceeEEEEEEec
Confidence 456789999999999999998887443211111 0000223334443311
Q ss_pred ccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEE
Q 014005 205 VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 283 (432)
Q Consensus 205 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 283 (432)
..|++.. . ... ...-+.+...++-| ..|.|.+|+.. .++....+ +-..|.+.|+++.++.+- ..|
T Consensus 52 --~s~~k~~-~--~~~--~~~~s~~t~~lvlgt~~g~v~~ys~~-~g~it~~~-----st~~h~~~v~~~~~~~~~-~ci 117 (541)
T KOG4547|consen 52 --YSPMKWL-S--LEK--AKKASLDTSMLVLGTPQGSVLLYSVA-GGEITAKL-----STDKHYGNVNEILDAQRL-GCI 117 (541)
T ss_pred --cchHHHH-h--HHH--HhhccCCceEEEeecCCccEEEEEec-CCeEEEEE-----ecCCCCCcceeeeccccc-Cce
Confidence 1111111 0 000 01123345567778 89999999998 56655544 336899999999999988 899
Q ss_pred EEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec---Cccee
Q 014005 284 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY---EPVMT 360 (432)
Q Consensus 284 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~---~~~~~ 360 (432)
.+++.|+.+..|+...... .+.+..- ...+.+++.+|||..|++++ +.|++||+ +.+.+
T Consensus 118 yS~~ad~~v~~~~~~~~~~----~~~~~~~-------------~~~~~sl~is~D~~~l~~as-~~ik~~~~~~kevv~~ 179 (541)
T KOG4547|consen 118 YSVGADLKVVYILEKEKVI----IRIWKEQ-------------KPLVSSLCISPDGKILLTAS-RQIKVLDIETKEVVIT 179 (541)
T ss_pred EecCCceeEEEEeccccee----eeeeccC-------------CCccceEEEcCCCCEEEecc-ceEEEEEccCceEEEE
Confidence 9999999999999998775 5666663 56789999999999999988 89999999 78888
Q ss_pred Eeecce
Q 014005 361 LSFCGI 366 (432)
Q Consensus 361 ~~~~~~ 366 (432)
|..|..
T Consensus 180 ftgh~s 185 (541)
T KOG4547|consen 180 FTGHGS 185 (541)
T ss_pred ecCCCc
Confidence 888875
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.97 E-value=1.2e-07 Score=84.16 Aligned_cols=170 Identities=16% Similarity=0.157 Sum_probs=117.9
Q ss_pred CCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc-eEEEEeecc
Q 014005 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM-ATKIANVGN 203 (432)
Q Consensus 125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~v~i~d~~~ 203 (432)
.+|.+++..|. |+..+.+...+-..++.. .+.|+-..+..+..-.+.|.. || .+-++|.+
T Consensus 330 ~~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~---------------~~~VrY~r~~~~~e~~vigt~--dgD~l~iyd~~- 390 (668)
T COG4946 330 VNGDYIALVSR-GKAFIMRPWDGYSIQVGK---------------KGGVRYRRIQVDPEGDVIGTN--DGDKLGIYDKD- 390 (668)
T ss_pred CCCcEEEEEec-CcEEEECCCCCeeEEcCC---------------CCceEEEEEccCCcceEEecc--CCceEEEEecC-
Confidence 46888888876 667776665554332221 134555555555556666666 66 89999997
Q ss_pred cccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcE
Q 014005 204 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 282 (432)
Q Consensus 204 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 282 (432)
.+...+. ...-+.|.++..+++|++++++ +...+.+.|++ ++....+- +...+-|+...|||++ ++
T Consensus 391 --~~e~kr~--e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid-ngnv~~id-------kS~~~lItdf~~~~ns-r~ 457 (668)
T COG4946 391 --GGEVKRI--EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID-NGNVRLID-------KSEYGLITDFDWHPNS-RW 457 (668)
T ss_pred --CceEEEe--eCCccceEEEEEcCCCcEEEEEcCceEEEEEEec-CCCeeEec-------ccccceeEEEEEcCCc-ee
Confidence 4443333 4677899999999999999999 88899999999 44433221 3445679999999999 99
Q ss_pred EEEEeCCC----eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 283 LAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 283 l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
+|.+--+| .|+++|+..++.. ..-.. .+.=.+-+|.|||++|.-
T Consensus 458 iAYafP~gy~tq~Iklydm~~~Kiy----~vTT~--------------ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 458 IAYAFPEGYYTQSIKLYDMDGGKIY----DVTTP--------------TAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred EEEecCcceeeeeEEEEecCCCeEE----EecCC--------------cccccCcccCCCCcEEEE
Confidence 99987766 6899999987752 22221 233446789999998753
No 277
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=3.8e-09 Score=95.18 Aligned_cols=214 Identities=11% Similarity=0.081 Sum_probs=136.0
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
+|+..|..+.--.+.+-+++++.|.+|++|.+...... . ....+..+++.|+
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~---------~-----------~tsaCQfTY~aHk-------- 784 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---------I-----------GTSACQFTYQAHK-------- 784 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc---------c-----------ccceeeeEhhhcc--------
Confidence 56777777755455667889999999999998653210 0 0233557889999
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceee-eeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
.+|.++.|+ .+.++++++ ||.|.+||.--+.... ...-.. +...+.|.++.- -+.. ++..
T Consensus 785 ----k~i~~igfL--~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk---------~~a~~~ikcl~n-v~~~-iliA 845 (1034)
T KOG4190|consen 785 ----KPIHDIGFL--ADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPK---------EGAGGNIKCLEN-VDRH-ILIA 845 (1034)
T ss_pred ----Ccccceeee--eccceeeec--cCcceeecccccchhHhhhcCcc---------cCCCceeEeccc-Ccch-heee
Confidence 999999994 566666655 7889999987665221 111110 011123333322 1222 3333
Q ss_pred eeeccceEEEEeecccccceeeEEee--cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYP--HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
+-.+..+|+++|.+.. ...|....- .+...-+.++++.+.|+.++.+ .+|.|.+.|.+ ++..+..+ ..
T Consensus 846 gcsaeSTVKl~DaRsc-e~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR-~G~vINsw-------rp 916 (1034)
T KOG4190|consen 846 GCSAESTVKLFDARSC-EWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDAR-NGKVINSW-------RP 916 (1034)
T ss_pred eccchhhheeeecccc-cceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecC-CCceeccC-------Cc
Confidence 2233789999998844 222322221 2344678899999999999999 99999999999 67777655 22
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEE-EEccccc
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRL-VDMRQSA 301 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i-wd~~~~~ 301 (432)
.......++ .|.. +.|+....|.++.+ |...++.
T Consensus 917 mecdllqla-apsd-q~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 917 MECDLLQLA-APSD-QALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred ccchhhhhc-Cchh-HHHHhhcccceeEeeehhcCCe
Confidence 222232333 2444 77888888889988 8766554
No 278
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=1.2e-06 Score=79.41 Aligned_cols=245 Identities=12% Similarity=0.149 Sum_probs=147.8
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecc-----------cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeee
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDR-----------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF 97 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 97 (432)
+.|+ .|.-+.|||+.+||+|-+. ...++|||+.+|.+. +.|
T Consensus 247 F~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk---------------------------rsF 298 (698)
T KOG2314|consen 247 FYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK---------------------------RSF 298 (698)
T ss_pred ccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh---------------------------cce
Confidence 3454 5788999999999998542 257999999998754 222
Q ss_pred ecCCccccccchhhhhcce-eEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccc
Q 014005 98 QSHEPEFDYLKSLEIEEKI-NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 176 (432)
Q Consensus 98 ~~h~~~~~~~~~~~~~~~v-~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 176 (432)
..-... ..+ .-..| |.|++++|--.. ..|.|++...-. .+..-.... .+|...
T Consensus 299 ~~~~~~----------~~~WP~frW--S~DdKy~Arm~~-~sisIyEtpsf~--lld~Kslki-----------~gIr~F 352 (698)
T KOG2314|consen 299 PVIKSP----------YLKWPIFRW--SHDDKYFARMTG-NSISIYETPSFM--LLDKKSLKI-----------SGIRDF 352 (698)
T ss_pred eccCCC----------ccccceEEe--ccCCceeEEecc-ceEEEEecCcee--eecccccCC-----------ccccCc
Confidence 221100 112 23578 889988887765 568898865432 222222222 788999
Q ss_pred cCCCCCcceecceeec---cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c----C------CeEE
Q 014005 177 HNPPSFAHGYHLEWTE---NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D----D------LRIN 242 (432)
Q Consensus 177 ~~~~~~~~~~~~~~~~---~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~----d------~~i~ 242 (432)
.|+|.+..++--.... -..+.+-.+. ..+.+++- .-+.-.=..+.|..+|.+|+.- + . ..+.
T Consensus 353 swsP~~~llAYwtpe~~~~parvtL~evP---s~~~iRt~-nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~e 428 (698)
T KOG2314|consen 353 SWSPTSNLLAYWTPETNNIPARVTLMEVP---SKREIRTK-NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLE 428 (698)
T ss_pred ccCCCcceEEEEcccccCCcceEEEEecC---ccceeeec-cceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEE
Confidence 9999877665443221 1234444444 33333332 1121122246688889888864 1 1 1245
Q ss_pred EEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe---CCCeEEEEEccccccccccceeecccccccCC
Q 014005 243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGS 319 (432)
Q Consensus 243 lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~ 319 (432)
|+.++-..-++..+ .....|...+|-|.| ..+++-+ ...++.+|.+.+......+++.+..
T Consensus 429 IfrireKdIpve~v--------elke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk------- 492 (698)
T KOG2314|consen 429 IFRIREKDIPVEVV--------ELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK------- 492 (698)
T ss_pred EEEeeccCCCceee--------ecchheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhhcc-------
Confidence 55555333333333 334568899999999 5555543 3357889988743222222444443
Q ss_pred ccceeeeecceeEEEEcCCCCEEEEe---eC-CeEEEEec
Q 014005 320 KSFFTEIIASISDIKFANDGQHLLSR---DY-MNLKVFRY 355 (432)
Q Consensus 320 ~~~~~~~~~~v~~~~~s~dg~~l~s~---~~-~~i~iwd~ 355 (432)
...+.+.|+|.|++++.+ +. |.+.++|.
T Consensus 493 --------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 493 --------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred --------cccceEEEcCCCcEEEEEEecccccceEEEec
Confidence 457789999999999873 33 89999999
No 279
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.93 E-value=1.3e-06 Score=88.85 Aligned_cols=254 Identities=11% Similarity=0.086 Sum_probs=155.8
Q ss_pred CCCcEEEEEEcCCCCEEEEecccceEEEE----EecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILF----ETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
..+.|.++.|-++...|+.+..+|.|.+. +..... .+.+..+ .
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-------------------------~E~VG~v---d----- 120 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-------------------------IEIVGSV---D----- 120 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-------------------------eEEEEEE---c-----
Confidence 45689999999999989999999999998 333322 1111211 1
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc-------------ceeee------eecCCCCcccccccc
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-------------KVKKI------KEMDHFPFVSSENTL 167 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-------------~~~~~------~~~~~~~~~~~~~~~ 167 (432)
..|.+++| |||++.++..+.++++.+-.-.-. ..+.+ ++-++|. +..+.
T Consensus 121 -------~GI~a~~W--SPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~G---s~gK~ 188 (928)
T PF04762_consen 121 -------SGILAASW--SPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHG---SAGKA 188 (928)
T ss_pred -------CcEEEEEE--CCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCc---chhhh
Confidence 88999999 999999999999998887542210 00000 0001100 00110
Q ss_pred ------------------ccccccccccCCCCCcceecceeec--c--ceEEEEeecccccceeeEEeecCCCCCeeEEE
Q 014005 168 ------------------LAEKNFMNEHNPPSFAHGYHLEWTE--N--MATKIANVGNSVHARCQKVYPHAHDFNINSIS 225 (432)
Q Consensus 168 ------------------~~~~~i~~~~~~~~~~~~~~~~~~~--~--~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~ 225 (432)
.....-..++|-.||.+++..+..+ + ..+++|+.+.. ...+- ..-.+--.+++
T Consensus 189 aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~----L~stS-E~v~gLe~~l~ 263 (928)
T PF04762_consen 189 AARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGE----LQSTS-EPVDGLEGALS 263 (928)
T ss_pred hhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCce----EEecc-ccCCCccCCcc
Confidence 0123445678889999999888733 3 58999987632 21111 22233345789
Q ss_pred eCCCCCEEEEE-c---CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccc
Q 014005 226 NNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 301 (432)
Q Consensus 226 ~~~~~~~l~~~-~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 301 (432)
|-|.|+++|+. . ...|.+|..+ |.....|.++. ......|..+.|++++ .+||..-.|. |.+|-..+..
T Consensus 264 WrPsG~lIA~~q~~~~~~~VvFfErN--GLrhgeF~l~~---~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 264 WRPSGNLIASSQRLPDRHDVVFFERN--GLRHGEFTLRF---DPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred CCCCCCEEEEEEEcCCCcEEEEEecC--CcEeeeEecCC---CCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCE
Confidence 99999999987 3 3456667665 54444443321 2345678999999999 9999977665 9999988765
Q ss_pred cccccceeecccccccCCccceeeeecceeEEEEcCCC-CEEEEeeC-CeEEEEec
Q 014005 302 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 302 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~s~~~-~~i~iwd~ 355 (432)
-.. .+.+.-. . ...+..+.|+|.. ..|..... |.+..+++
T Consensus 337 WYL--Kqei~~~-~-----------~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 337 WYL--KQEIRFS-S-----------SESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred EEE--EEEEEcc-C-----------CCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 322 1222210 0 2344558888853 33444333 66655555
No 280
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.88 E-value=1.7e-07 Score=79.85 Aligned_cols=242 Identities=11% Similarity=0.074 Sum_probs=153.5
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecC-CcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
+|.+.|+....-|...-+++.+.|.++|||--.+ ++.- . .......
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~w------------------------p--sI~~~mP------- 68 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYW------------------------P--SIYHYMP------- 68 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccccccC------------------------c--hhhhhCC-------
Confidence 4677888888888888899999999999996443 3211 0 0111122
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc--ceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
.+++++++ .++...|+.|-..|++.-+.+... +.........|. ..+..+.|+-...+++
T Consensus 69 -----~~~~~~~y--~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~-----------~~v~~~if~~~~e~V~ 130 (404)
T KOG1409|consen 69 -----SPCSAMEY--VSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQ-----------ARVSAIVFSLTHEWVL 130 (404)
T ss_pred -----CCceEeee--eccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhh-----------cceeeEEecCCceeEE
Confidence 78999999 788889999999999988877532 222222233333 6677777777777777
Q ss_pred cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCC-CceeeEeecCCCCcC
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMD 264 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~-~~~~~~~~~~~~~~~ 264 (432)
+.+. |..+.-.-.+ .+..+..+. -.....++.+.- .+...| ..|.+..-.+... -..+.. +.
T Consensus 131 s~~~--dk~~~~hc~e---~~~~lg~Y~--~~~~~t~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~-------~~ 194 (404)
T KOG1409|consen 131 STGK--DKQFAWHCTE---SGNRLGGYN--FETPASALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITT-------FN 194 (404)
T ss_pred Eecc--ccceEEEeec---cCCcccceE--eeccCCCCceee--EEEEecccccceEEEEEeecCCceEEE-------Ec
Confidence 6665 3333221111 111100000 000011111111 134455 5666666655521 123333 48
Q ss_pred CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
+|.+.+.+++|.|.. .+|.+|..|..+.+||+-.++-. ...+.+| ...|..+...+--+.|.+
T Consensus 195 ~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~---~~el~gh-------------~~kV~~l~~~~~t~~l~S 257 (404)
T KOG1409|consen 195 GHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGT---AYELQGH-------------NDKVQALSYAQHTRQLIS 257 (404)
T ss_pred CcccceEEEEEcCCC-cEEEeccccCceEEEeccCCcce---eeeeccc-------------hhhhhhhhhhhhheeeee
Confidence 999999999999998 99999999999999999754432 3556665 677888877777777777
Q ss_pred e-eCCeEEEEec
Q 014005 345 R-DYMNLKVFRY 355 (432)
Q Consensus 345 ~-~~~~i~iwd~ 355 (432)
+ .||.|.+||+
T Consensus 258 ~~edg~i~~w~m 269 (404)
T KOG1409|consen 258 CGEDGGIVVWNM 269 (404)
T ss_pred ccCCCeEEEEec
Confidence 5 5699999999
No 281
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.86 E-value=4.1e-06 Score=70.25 Aligned_cols=220 Identities=15% Similarity=0.173 Sum_probs=120.2
Q ss_pred EEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhccee
Q 014005 38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 117 (432)
Q Consensus 38 ~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 117 (432)
++.+.+|+.||.- .|..|.|-..++.-.. .+...+-.+ |. .-.-.
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~s-------------------------i~~kcqVpk---D~------~PQWR 47 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSS-------------------------IIGKCQVPK---DP------NPQWR 47 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchh-------------------------eeEEEecCC---CC------Cchhe
Confidence 5677899988875 5667777665543210 111222221 00 03456
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEE
Q 014005 118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197 (432)
Q Consensus 118 ~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~ 197 (432)
.++| +||+.+||.+...|+|+++|+.+..+..+..-. .+..+
T Consensus 48 kl~W--SpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~--------------------~~~~d---------------- 89 (282)
T PF15492_consen 48 KLAW--SPDCTLLAYAESTGTIRVFDLMGSELFVIPPAM--------------------SFPGD---------------- 89 (282)
T ss_pred EEEE--CCCCcEEEEEcCCCeEEEEecccceeEEcCccc--------------------ccCCc----------------
Confidence 7999 999999999999999999999875533221100 00000
Q ss_pred EEeecccccceeeEEeecCCCCCeeEEEeCC-------CCCEEEEEcCCeEEEEeCCC----CCceeeEeecCCCCc-CC
Q 014005 198 IANVGNSVHARCQKVYPHAHDFNINSISNNS-------DCETFVSADDLRINLWNLEI----SDQCFNIVDMKPSNM-DD 265 (432)
Q Consensus 198 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~d~~i~lwd~~~----~~~~~~~~~~~~~~~-~~ 265 (432)
-...|..+.|.+ ....++....|.++-|-+.. .-+....+ .+ ..
T Consensus 90 -------------------~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsf-----sf~~~ 145 (282)
T PF15492_consen 90 -------------------LSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSF-----SFSSH 145 (282)
T ss_pred -------------------cccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEE-----Eeccc
Confidence 011122222211 11234444677666665421 11122222 11 23
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCC-----------CeEEEEEccccccccccceeeccccc-ccC--------Cccce--
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSR-----------GFVRLVDMRQSALCDHSARILRDAAE-SHG--------SKSFF-- 323 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~h~~-~~~--------~~~~~-- 323 (432)
+...|+++.++|.. ++|+.||.. .-+.-|.+-++..-.+.+...+.+.. .+. ...++
T Consensus 146 yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~ 224 (282)
T PF15492_consen 146 YPHGINSAVYHPKH-RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR 224 (282)
T ss_pred CCCceeEEEEcCCC-CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeec
Confidence 46689999999998 888877622 13566766655432111111111000 000 00111
Q ss_pred -eeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 324 -TEIIASISDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 324 -~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
......|..|..||||+.||+..- |.|.+|++
T Consensus 225 ~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 225 QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred cccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence 112568999999999999999744 99999999
No 282
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=9.6e-07 Score=82.52 Aligned_cols=242 Identities=12% Similarity=0.132 Sum_probs=166.3
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeee-cCCccccccc
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLK 108 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~h~~~~~~~~ 108 (432)
+|++.|.-+.|+.+.+.|-|.+.+|-|.+|-+-.+.-. . ..+. -.+
T Consensus 69 GH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~-------------------------E-EMiNnRnK------- 115 (1189)
T KOG2041|consen 69 GHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWC-------------------------E-EMINNRNK------- 115 (1189)
T ss_pred cCcceEEEEEeccccccccccCCCceEEEEeeecccHH-------------------------H-HHhhCcCc-------
Confidence 78999999999999999999999999999998776421 0 0111 122
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
+.|.+++| +.||+.++..-.||.|.+=.+.+..+- .-.. .......+.|+++...+..+
T Consensus 116 -----SvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGNRIw---gKeL-----------kg~~l~hv~ws~D~~~~Lf~ 174 (1189)
T KOG2041|consen 116 -----SVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGNRIW---GKEL-----------KGQLLAHVLWSEDLEQALFK 174 (1189)
T ss_pred -----cEEEEEEE--cCCCcEEEEEEccCCEEEEeeccceec---chhc-----------chheccceeecccHHHHHhh
Confidence 67899999 899999999999999988777655421 1000 01234567899998888887
Q ss_pred eeeccceEEEEeecccccc----eeeEEe---ecCCCCCeeEEEeC--------CCCCEEEEE-cCCeEEEEeCCCCCce
Q 014005 189 EWTENMATKIANVGNSVHA----RCQKVY---PHAHDFNINSISNN--------SDCETFVSA-DDLRINLWNLEISDQC 252 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~----~~~~~~---~~~~~~~i~~~~~~--------~~~~~l~~~-~d~~i~lwd~~~~~~~ 252 (432)
.. +|.+.+||.+.+... .|.-.. .......|..+.|. |+...++++ .+|.+.+-.-+....+
T Consensus 175 ~a--nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 175 KA--NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hc--CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 77 889999997643211 221111 01222346666665 578889999 9999888766633322
Q ss_pred eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC---------eEEEEEccccccccccceeecccccccCCccce
Q 014005 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---------FVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (432)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~ 323 (432)
. ++ ...-.+..+.|+++| .+||.++.+. .|.+|..- |+. +..++.-
T Consensus 253 v-v~--------dtgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i----~gtlkvp---------- 307 (1189)
T KOG2041|consen 253 V-VV--------DTGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPY-GHI----VGTLKVP---------- 307 (1189)
T ss_pred e-EE--------ecccEeecceecCCC-cEEEEccCcccccCccccceEEEeccc-hhh----eEEEecC----------
Confidence 2 22 122458899999999 9999998653 45555433 333 4555541
Q ss_pred eeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 324 TEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 324 ~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
...|++++|-..|-.+|.+-|+.|++=++
T Consensus 308 ---g~~It~lsWEg~gLriA~AvdsfiyfanI 336 (1189)
T KOG2041|consen 308 ---GSCITGLSWEGTGLRIAIAVDSFIYFANI 336 (1189)
T ss_pred ---CceeeeeEEcCCceEEEEEecceEEEEee
Confidence 56899999998888888877788877776
No 283
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=2e-08 Score=85.54 Aligned_cols=160 Identities=10% Similarity=0.107 Sum_probs=115.6
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEE
Q 014005 120 RWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIA 199 (432)
Q Consensus 120 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~ 199 (432)
+|.-+..+-. ++.+.+-.|.+-|++++....+. ..+.|.+..|...+..+..|.. +|.|..+
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~---------------sksDVfAlQf~~s~nLv~~GcR--ngeI~~i 279 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ---------------SKSDVFALQFAGSDNLVFNGCR--NGEIFVI 279 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccccccc---------------cchhHHHHHhcccCCeeEeccc--CCcEEEE
Confidence 5522223433 55566778999999988644332 1378999999999999999999 9999999
Q ss_pred eecccc--cceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCce---eeEeecCCCCcCCCCcceEE
Q 014005 200 NVGNSV--HARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQC---FNIVDMKPSNMDDLTEVITS 272 (432)
Q Consensus 200 d~~~~~--~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~ 272 (432)
|++... .+.+.+.+ -|++.|+++..-. ++++|.+. .+|+|.+||++ ..++ +..+ .+|.+.-.-
T Consensus 280 DLR~rnqG~~~~a~rl--yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R-~~K~~~~V~qY-------eGHvN~~a~ 349 (425)
T KOG2695|consen 280 DLRCRNQGNGWCAQRL--YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR-ATKCKKSVMQY-------EGHVNLSAY 349 (425)
T ss_pred EeeecccCCCcceEEE--EcCcchhhhhhhccccceEeeccCcCceeEeeeh-hhhcccceeee-------ecccccccc
Confidence 998542 23444444 6899999998776 67777777 99999999999 4455 5544 777554333
Q ss_pred EE--EcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc
Q 014005 273 AE--FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312 (432)
Q Consensus 273 ~~--~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 312 (432)
+. .++.. ..+++++.|...+||.++.|.+ +.++.-
T Consensus 350 l~~~v~~ee-g~I~s~GdDcytRiWsl~~ghL----l~tipf 386 (425)
T KOG2695|consen 350 LPAHVKEEE-GSIFSVGDDCYTRIWSLDSGHL----LCTIPF 386 (425)
T ss_pred ccccccccc-ceEEEccCeeEEEEEecccCce----eeccCC
Confidence 33 34555 7888899999999999999887 455544
No 284
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.79 E-value=6.8e-06 Score=71.07 Aligned_cols=242 Identities=14% Similarity=0.126 Sum_probs=148.1
Q ss_pred cEEEEEEcC-CCCEEEEecccce-EEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 34 IVSAIEFDK-TGDYLAVGDRGGR-VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 34 ~V~~~~fsp-~g~~l~t~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
....++.+| .+..++.+-.-|+ ..+||..+++.... +.. ..-..|.||-
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~-------~~a------------~~gRHFyGHg---------- 56 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQR-------LWA------------PPGRHFYGHG---------- 56 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeE-------EcC------------CCCCEEecCE----------
Confidence 456788899 5566777777665 67899988764411 000 0113456664
Q ss_pred hhcceeEEEEEEcCCCCEEEEEe-----CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 112 IEEKINRVRWCAAPNGSMFILST-----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
.| ++||++|++.- ..|.|-|||.. ....++.++..+. -.--.+.+.|++..++
T Consensus 57 --------~f--s~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri~E~~s~G-----------IGPHel~l~pDG~tLv 114 (305)
T PF07433_consen 57 --------VF--SPDGRLLYTTENDYETGRGVIGVYDAA-RGYRRIGEFPSHG-----------IGPHELLLMPDGETLV 114 (305)
T ss_pred --------EE--cCCCCEEEEeccccCCCcEEEEEEECc-CCcEEEeEecCCC-----------cChhhEEEcCCCCEEE
Confidence 67 89999999973 35899999998 3344555554433 2334567788885554
Q ss_pred cc--eeec---cc-----------eEEEEeecccccceeeEEe---ecCCCCCeeEEEeCCCCCEEEEE-cCCe------
Q 014005 187 HL--EWTE---NM-----------ATKIANVGNSVHARCQKVY---PHAHDFNINSISNNSDCETFVSA-DDLR------ 240 (432)
Q Consensus 187 ~~--~~~~---~~-----------~v~i~d~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~-~d~~------ 240 (432)
.+ +... .| .+...|.. +++.+... ...|.-.|..+++.++|..+... ..|.
T Consensus 115 VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~---sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~P 191 (305)
T PF07433_consen 115 VANGGIETHPDSGRAKLNLDTMQPSLVYLDAR---SGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPP 191 (305)
T ss_pred EEcCCCccCcccCceecChhhcCCceEEEecC---CCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCC
Confidence 43 2211 12 34444444 44444432 12366789999999999766655 3332
Q ss_pred -EEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEE-EeCCCeEEEEEccccccccccceeecccccccC
Q 014005 241 -INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHG 318 (432)
Q Consensus 241 -i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~ 318 (432)
+-+++.. ..+..+...........+.+-+|++++++ ..+++ +-..+.+.+||..+++. +....-
T Consensus 192 Lva~~~~g---~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-~~ia~tsPrGg~~~~~d~~tg~~----~~~~~l------ 257 (305)
T PF07433_consen 192 LVALHRRG---GALRLLPAPEEQWRRLNGYIGSIAADRDG-RLIAVTSPRGGRVAVWDAATGRL----LGSVPL------ 257 (305)
T ss_pred eEEEEcCC---CcceeccCChHHHHhhCCceEEEEEeCCC-CEEEEECCCCCEEEEEECCCCCE----eecccc------
Confidence 3333333 33444433333334556789999999998 66654 44777999999999876 333332
Q ss_pred CccceeeeecceeEEEEcCCCCEEEEeeCCeEEEE
Q 014005 319 SKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVF 353 (432)
Q Consensus 319 ~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iw 353 (432)
..+..++-.+++ +++|...|.+...
T Consensus 258 ---------~D~cGva~~~~~-f~~ssG~G~~~~~ 282 (305)
T PF07433_consen 258 ---------PDACGVAPTDDG-FLVSSGQGQLIRL 282 (305)
T ss_pred ---------CceeeeeecCCc-eEEeCCCccEEEc
Confidence 457778877777 7777655554333
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.78 E-value=2.1e-06 Score=70.95 Aligned_cols=190 Identities=11% Similarity=-0.014 Sum_probs=116.7
Q ss_pred CEEEEEeCCCeEEEEEccCcce--eeeeecCCCCccccccccccccccccccCCCC-CcceecceeeccceEEEEeeccc
Q 014005 128 SMFILSTNDKTIKLWKVRDQKV--KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS-FAHGYHLEWTENMATKIANVGNS 204 (432)
Q Consensus 128 ~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~v~i~d~~~~ 204 (432)
.+|+.|+..|...+|...+.+. ......+ ..|.-..-..+ ..-+..++. |.++++.++...
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~sn--------------n~v~~~~r~cd~~~~~~i~sn--dht~k~~~~~~~ 148 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSN--------------NDVTLVKRYCDLKFPLNIASN--DHTGKTMVVSGD 148 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccc--------------cchhhhhhhcccccceeeccC--CcceeEEEEecC
Confidence 4788888889999999876542 1111110 11111100011 111222222 667788877754
Q ss_pred ccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEE
Q 014005 205 VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 283 (432)
Q Consensus 205 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 283 (432)
..+..+..- .-.+++++++++++++++. +...|..|.++..++.+..+.. ......=.+..|+... ..+
T Consensus 149 s~~~~~h~~----~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~-----a~t~D~gF~~S~s~~~-~~F 218 (344)
T KOG4532|consen 149 SNKFAVHNQ----NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE-----APTSDHGFYNSFSEND-LQF 218 (344)
T ss_pred cccceeecc----ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe-----cccCCCceeeeeccCc-ceE
Confidence 333333221 1238899999999999987 8889999999855544332211 2223334677899888 899
Q ss_pred EEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC--EEEEeeC-CeEEEEec
Q 014005 284 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDY-MNLKVFRY 355 (432)
Q Consensus 284 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~--~l~s~~~-~~i~iwd~ 355 (432)
|++..||++.|||+|.....-.....-+.| |.+.+..+.|++.|. +|.-... +.+.+-|+
T Consensus 219 Av~~Qdg~~~I~DVR~~~tpm~~~sstrp~------------hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~ 281 (344)
T KOG4532|consen 219 AVVFQDGTCAIYDVRNMATPMAEISSTRPH------------HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT 281 (344)
T ss_pred EEEecCCcEEEEEecccccchhhhcccCCC------------CCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence 999999999999999755321111111111 478999999998764 3444433 89999999
No 286
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.77 E-value=5.8e-08 Score=90.68 Aligned_cols=209 Identities=12% Similarity=0.174 Sum_probs=142.5
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
.-.+++.++..+|.|+-+|.++.-| +.+-|++..-. ...-+..-+
T Consensus 22 ~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~--------------------------ppr~l~h~t-------- 66 (1081)
T KOG0309|consen 22 KVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT--------------------------PPRWLHHIT-------- 66 (1081)
T ss_pred EecCcccceeeccccchhhhhhhcC-eEEEeccCCCC--------------------------CceeeeccC--------
Confidence 3455788999999999999998865 55667766421 111111111
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeee-eecCCCCccccccccccccccccccCCCCCc-ceec
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYH 187 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~ 187 (432)
+-.|-...|+|++...+-++......-.+|++....-..+ .-+.+|. ..+.++.|+++.. .+++
T Consensus 67 ---pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghs-----------raitd~n~~~q~pdVlat 132 (1081)
T KOG0309|consen 67 ---PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHS-----------RAITDINFNPQHPDVLAT 132 (1081)
T ss_pred ---cchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCc-----------cceeccccCCCCCcceee
Confidence 0346677887777667777766667778899864432111 1223333 6889999998865 4455
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCE-EEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
.+. |..+..||++. ...++..+ ..-......+.|+..... +|+...+.|++||.+..+..+..+ ++|
T Consensus 133 csv--dt~vh~wd~rS--p~~p~ys~-~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~-------K~~ 200 (1081)
T KOG0309|consen 133 CSV--DTYVHAWDMRS--PHRPFYST-SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSL-------KGH 200 (1081)
T ss_pred ccc--cccceeeeccC--CCcceeee-ecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEe-------ccc
Confidence 566 88999999984 33444444 344456678899875444 444488899999999666666655 779
Q ss_pred CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccc
Q 014005 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 299 (432)
...|+.++|..--...+.+++.|++|+.||...
T Consensus 201 vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 201 VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred ceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 899999999764436788899999999999764
No 287
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.70 E-value=6.9e-05 Score=65.13 Aligned_cols=223 Identities=15% Similarity=0.087 Sum_probs=136.9
Q ss_pred EEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcc
Q 014005 37 AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (432)
Q Consensus 37 ~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (432)
++.|.+ +|.++++--..+.|..|+..+++.. .+. . ..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~----------------------------~~~-~-------------~~ 41 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE----------------------------VID-L-------------PG 41 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE----------------------------EEE-S-------------SS
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE----------------------------EEe-c-------------CC
Confidence 578888 7777777767889999998876421 111 1 22
Q ss_pred eeEEEEEEc-CCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec--
Q 014005 116 INRVRWCAA-PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE-- 192 (432)
Q Consensus 116 v~~l~~~~s-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-- 192 (432)
...+.+ . +++ .++.+..++ +.++|..+++...+....... .......++++.+++.+.++.....
T Consensus 42 ~~G~~~--~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~--------~~~~~~ND~~vd~~G~ly~t~~~~~~~ 109 (246)
T PF08450_consen 42 PNGMAF--DRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGG--------VPFNRPNDVAVDPDGNLYVTDSGGGGA 109 (246)
T ss_dssp EEEEEE--ECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTC--------SCTEEEEEEEE-TTS-EEEEEECCBCT
T ss_pred CceEEE--EccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCC--------cccCCCceEEEcCCCCEEEEecCCCcc
Confidence 567777 4 565 556665555 555599988776665542100 0125677889999998665544321
Q ss_pred --c--ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCcee---eEeecCCCCc
Q 014005 193 --N--MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCF---NIVDMKPSNM 263 (432)
Q Consensus 193 --~--~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~---~~~~~~~~~~ 263 (432)
. +.+..++.. ++..... ..-...+.++|+|+++.|..+ ..+.|..++++..+..+ +.+ ..+
T Consensus 110 ~~~~~g~v~~~~~~----~~~~~~~--~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~----~~~ 179 (246)
T PF08450_consen 110 SGIDPGSVYRIDPD----GKVTVVA--DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVF----IDF 179 (246)
T ss_dssp TCGGSEEEEEEETT----SEEEEEE--EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEE----EE-
T ss_pred ccccccceEEECCC----CeEEEEe--cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeE----EEc
Confidence 1 334444443 1222222 234567899999999988766 68889999886333311 111 011
Q ss_pred CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc-CCCCEE
Q 014005 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-NDGQHL 342 (432)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l 342 (432)
....+....++++.+| ++.++....+.|.++|.. |++ +..+.. + ...+++++|. ++.+.|
T Consensus 180 ~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~-G~~----~~~i~~-p------------~~~~t~~~fgg~~~~~L 240 (246)
T PF08450_consen 180 PGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD-GKL----LREIEL-P------------VPRPTNCAFGGPDGKTL 240 (246)
T ss_dssp SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCE----EEEEE--S------------SSSEEEEEEESTTSSEE
T ss_pred CCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC-ccE----EEEEcC-C------------CCCEEEEEEECCCCCEE
Confidence 2222457899999999 888887789999999987 765 455544 1 2478999994 565444
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.69 E-value=5.3e-07 Score=78.56 Aligned_cols=159 Identities=11% Similarity=0.063 Sum_probs=100.3
Q ss_pred cccCCCCCcceecceeeccceEEEEeeccccc-ceeeEEeecCCCCCeeEEEeCCCCCEEEEE----cCCeEEEEeCCCC
Q 014005 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVH-ARCQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEIS 249 (432)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~d~~i~lwd~~~~ 249 (432)
....++.+..++.+.. +....++++..... .++...+ .-...-+++.+..+......+ +...+.+|... .
T Consensus 67 ~~~~s~~~~llAv~~~--~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~-~ 141 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATS--SKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD-S 141 (390)
T ss_pred ccccCCCceEEEEEeC--CCceEEEEEecCCCcceeeeEe--ecccCcceeeeeeccceEEEEeecCCceeeeeeccc-c
Confidence 3445666677776665 55555666553322 2333332 222334455555554444444 34455555555 2
Q ss_pred CceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceee-cccccccCCccceeeeec
Q 014005 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIA 328 (432)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~ 328 (432)
+.+. .+-+|-+.+..++++||+ ++++++..|..|++-....-.. +..| -|| ..
T Consensus 142 ~~~~--------~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~----IesfclGH-------------~e 195 (390)
T KOG3914|consen 142 GRCE--------PILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFV----IESFCLGH-------------KE 195 (390)
T ss_pred cCcc--------hhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccc----hhhhcccc-------------Hh
Confidence 2222 237999999999999999 9999999999999987764332 2333 345 78
Q ss_pred ceeEEEEcCCCCEEEE-eeCCeEEEEec---CcceeEeecc
Q 014005 329 SISDIKFANDGQHLLS-RDYMNLKVFRY---EPVMTLSFCG 365 (432)
Q Consensus 329 ~v~~~~~s~dg~~l~s-~~~~~i~iwd~---~~~~~~~~~~ 365 (432)
-|..++.-++-. |++ |+|+++++||+ +.+.++....
T Consensus 196 FVS~isl~~~~~-LlS~sGD~tlr~Wd~~sgk~L~t~dl~s 235 (390)
T KOG3914|consen 196 FVSTISLTDNYL-LLSGSGDKTLRLWDITSGKLLDTCDLSS 235 (390)
T ss_pred heeeeeeccCce-eeecCCCCcEEEEecccCCcccccchhH
Confidence 999999887654 565 57899999999 5556655543
No 289
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=3e-08 Score=94.34 Aligned_cols=215 Identities=17% Similarity=0.242 Sum_probs=142.1
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
.|...-+|++|+-..++|+.|+..|.|+++++.++... ....+|+
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e---------------------------~s~ncH~-------- 1143 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME---------------------------ESVNCHQ-------- 1143 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcccc---------------------------ccccccc--------
Confidence 45678899999999999999999999999999988643 4677888
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCCC--eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
..|+.+.= +.+|..+++.+.-. -..+|++..- ......+ ..-.++.|+....+-+.
T Consensus 1144 ----SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s~-~~~~Hsf---------------~ed~~vkFsn~~q~r~~ 1201 (1516)
T KOG1832|consen 1144 ----SAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASST-GGPRHSF---------------DEDKAVKFSNSLQFRAL 1201 (1516)
T ss_pred ----cccccccc--cCCcceeeeeccccCchHHHhccccc-cCccccc---------------cccceeehhhhHHHHHh
Confidence 88888876 88998877764432 5789998642 1111111 22345667766666666
Q ss_pred ceeeccceEEEEeecccccceeeEEeec---CCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPH---AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (432)
|+. .....+||++ +.....++.. +....-++..|+|....++ .||. +||++. .+.++.| .
T Consensus 1202 gt~--~d~a~~YDvq---T~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndGv--LWDvR~-~~aIh~F-------D 1264 (1516)
T KOG1832|consen 1202 GTE--ADDALLYDVQ---TCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDGV--LWDVRI-PEAIHRF-------D 1264 (1516)
T ss_pred ccc--ccceEEEecc---cCcHHHHhcCcchhhhhhccccccCCCcceEe--eCce--eeeecc-HHHHhhh-------h
Confidence 665 5678899998 4444444211 2233447788999887665 4554 799993 4555544 2
Q ss_pred CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
..+ .--.-.|||.| ..++.-+ .|||+|+-++ ++.... -.-..+.|+..|..+..
T Consensus 1265 ~ft-~~~~G~FHP~g-~eVIINS-----EIwD~RTF~l----Lh~VP~---------------Ldqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1265 QFT-DYGGGGFHPSG-NEVIINS-----EIWDMRTFKL----LHSVPS---------------LDQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred hhe-ecccccccCCC-ceEEeec-----hhhhhHHHHH----HhcCcc---------------ccceEEEeccCccchhh
Confidence 222 11234699999 6555443 5999998765 343332 12346788888876543
No 290
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.66 E-value=9e-06 Score=84.41 Aligned_cols=236 Identities=10% Similarity=0.090 Sum_probs=133.5
Q ss_pred cEEEEEEcCCCCEEEEec-ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCC-cccccc----
Q 014005 34 IVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE-PEFDYL---- 107 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~-~~~~~~---- 107 (432)
.-..++++++++.|.++. ..+.|+++|..++... ++.+-. ..+++-
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~----------------------------tlag~G~~g~~~~gg~~ 676 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVR----------------------------TLAGNGTKGSDYQGGKK 676 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE----------------------------EEeccCcccCCCCCChh
Confidence 357788999888665554 4567999998765421 111100 000000
Q ss_pred chhhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccc-cccccccccccccccCCCCCcce
Q 014005 108 KSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS-SENTLLAEKNFMNEHNPPSFAHG 185 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~ 185 (432)
.....-..-..+++ +| ++..+++.+.++.|++||..++....+.......... .......-.....+++++++..+
T Consensus 677 ~~~~~ln~P~gVa~--dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~L 754 (1057)
T PLN02919 677 GTSQVLNSPWDVCF--EPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKEL 754 (1057)
T ss_pred hhHhhcCCCeEEEE--ecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEE
Confidence 00000023357889 77 5666666678899999999877644332110000000 00000001234568888988755
Q ss_pred ecceeeccceEEEEeeccccccee----------eEEee-------cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCC
Q 014005 186 YHLEWTENMATKIANVGNSVHARC----------QKVYP-------HAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 247 (432)
Q Consensus 186 ~~~~~~~~~~v~i~d~~~~~~~~~----------~~~~~-------~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~ 247 (432)
+.... .++.|++||+........ ...+. .........++++++|+.+++- .++.|++||.+
T Consensus 755 YVADs-~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~ 833 (1057)
T PLN02919 755 YIADS-ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA 833 (1057)
T ss_pred EEEEC-CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence 54332 267999999874211000 00000 0011235688999999877777 89999999998
Q ss_pred CCCceeeEeecCCC------CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 248 ISDQCFNIVDMKPS------NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 248 ~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
++....+...... ...+.-.....++++++| +++++-+.++.|++||+++++.
T Consensus 834 -tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 834 -TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred -CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCCcc
Confidence 4443332210000 011223457899999999 8888888999999999998764
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.63 E-value=5.9e-06 Score=69.36 Aligned_cols=199 Identities=14% Similarity=0.184 Sum_probs=107.6
Q ss_pred EEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhc
Q 014005 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (432)
Q Consensus 35 V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (432)
=+.++||||+.+||.+...|+|+++|+.+.... ...|. ..+. .. ...
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf------------------~I~p~----~~~~---------~d--~~~ 92 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF------------------VIPPA----MSFP---------GD--LSD 92 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeE------------------EcCcc----cccC---------Cc--ccc
Confidence 356899999999999999999999999875432 00010 0000 01 116
Q ss_pred ceeEEEEEEcCC----CCEEEEEeCCCeEEEEEccCcc---eeee--eec-CCCCccccccccccccccccccCCCCCcc
Q 014005 115 KINRVRWCAAPN----GSMFILSTNDKTIKLWKVRDQK---VKKI--KEM-DHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 115 ~v~~l~~~~s~~----~~~l~s~~~d~~i~iwd~~~~~---~~~~--~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
.|-.+.|+.... ...|++-..+|.++-+-+..+. -... ..+ ...+ ..|.++.++|....
T Consensus 93 Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp-----------~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 93 AIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP-----------HGINSAVYHPKHRL 161 (282)
T ss_pred ceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC-----------CceeEEEEcCCCCE
Confidence 677777753111 2245666677877777764321 1111 111 1123 57788888888777
Q ss_pred eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEE--EE-cCCe------EEEEeCCCCCceeeE
Q 014005 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV--SA-DDLR------INLWNLEISDQCFNI 255 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~--~~-~d~~------i~lwd~~~~~~~~~~ 255 (432)
++.|+...+.. ... .+....+++-.+-.+..+.- +. .|+. ..+|.+- + ++.
T Consensus 162 LlVgG~~~~~~-~~s---------------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~-~---~~~ 221 (282)
T PF15492_consen 162 LLVGGCEQNQD-GMS---------------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIP-S---FKF 221 (282)
T ss_pred EEEeccCCCCC-ccc---------------cccccCceEEEEcCCCCcEEEccccCccccccccccceeecc-c---eee
Confidence 77665422100 000 11122232322222222111 11 1211 1222222 1 111
Q ss_pred eecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 256 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
+. ........|..+..|||| +.||+...+|.|.+|++.+-++
T Consensus 222 fs----~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 222 FS----RQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred ee----ccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchh
Confidence 10 002235679999999999 9999999999999999986543
No 292
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.63 E-value=7.2e-06 Score=73.88 Aligned_cols=194 Identities=11% Similarity=0.041 Sum_probs=126.3
Q ss_pred cceeEEEEEEcCCCCEEEE-----EeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 114 EKINRVRWCAAPNGSMFIL-----STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..|...+|+|-.++..|+. ....+.+++|.+..+.......+.. -.-..+.|.+.+.++..-
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk-------------~~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK-------------VSGVQLKWQVLGKYLLVL 240 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe-------------ecccEEEEecCCceEEEE
Confidence 5677788854334444544 3567889999997655333222211 112235667777766543
Q ss_pred eee---------ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEE--EE-cCCeEEEEeCCCCCceeeEe
Q 014005 189 EWT---------ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV--SA-DDLRINLWNLEISDQCFNIV 256 (432)
Q Consensus 189 ~~~---------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~--~~-~d~~i~lwd~~~~~~~~~~~ 256 (432)
... +...+.++++. ...++.. ....+.|...+|.|.++.++ +| .+..+.++|++ ++ ....
T Consensus 241 ~~t~~ksnKsyfgesnLyl~~~~----e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr-~N-l~~~- 312 (561)
T COG5354 241 VMTHTKSNKSYFGESNLYLLRIT----ERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR-GN-LRFY- 312 (561)
T ss_pred EEEeeecccceeccceEEEEeec----cccccee-ccccccceeeeecccCCceeEEecccccceeecccc-cc-eEEe-
Confidence 321 13467788775 2233333 35578999999999988776 45 79999999999 33 2222
Q ss_pred ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC---CeEEEEEccccccccccceeecccccccCCccceeeeecceeEE
Q 014005 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (432)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~ 333 (432)
.....=+.+.|+|.+ ++++.++.| |.|-+||......+ ...+.+ ...+-+
T Consensus 313 --------~Pe~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf~~---~~~~~~---------------~n~s~~ 365 (561)
T COG5354 313 --------FPEQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRFKV---AGAFNG---------------LNTSYC 365 (561)
T ss_pred --------cCCcccccccccCcc-cEEEEecCCccccceEEeccCCceEE---EEEeec---------------CCceEe
Confidence 222334678899998 888888755 68999998865543 334554 345667
Q ss_pred EEcCCCCEEEEe-------eCCeEEEEec
Q 014005 334 KFANDGQHLLSR-------DYMNLKVFRY 355 (432)
Q Consensus 334 ~~s~dg~~l~s~-------~~~~i~iwd~ 355 (432)
.|+|||+++.+. -|..++|||+
T Consensus 366 ~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 366 DWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred eccCCceEEEecCCCcccccCcceEEEEe
Confidence 899999998763 2478999999
No 293
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=2.5e-05 Score=74.05 Aligned_cols=101 Identities=12% Similarity=0.199 Sum_probs=69.1
Q ss_pred EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEE---------EeCCCeEEEEEccccc
Q 014005 232 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY---------SSSRGFVRLVDMRQSA 301 (432)
Q Consensus 232 ~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~---------~~~dg~i~iwd~~~~~ 301 (432)
.+|.| ..|+|.++|+. ++...+.+ .-|++.|.++.|--.. .++-. ++.-+.+.+-|+++|.
T Consensus 439 LvAvGT~sGTV~vvdvs-t~~v~~~f-------svht~~VkgleW~g~s-slvSfsys~~n~~sg~vrN~l~vtdLrtGl 509 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVS-TNAVAASF-------SVHTSLVKGLEWLGNS-SLVSFSYSHVNSASGGVRNDLVVTDLRTGL 509 (1062)
T ss_pred eEEeecCCceEEEEEec-chhhhhhh-------cccccceeeeeeccce-eEEEeeeccccccccceeeeEEEEEccccc
Confidence 45566 77777777777 44444433 6788889999987654 33322 2233467888999987
Q ss_pred cccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005 302 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 302 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
- +.|++ ...+. ..+|..+..|..|+||+.. .+.-+.+||+
T Consensus 510 s-----k~fR~-l~~~d--------espI~~irvS~~~~yLai~Fr~~plEiwd~ 550 (1062)
T KOG1912|consen 510 S-----KRFRG-LQKPD--------ESPIRAIRVSSSGRYLAILFRREPLEIWDL 550 (1062)
T ss_pred c-----ccccc-CCCCC--------cCcceeeeecccCceEEEEecccchHHHhh
Confidence 4 55553 11111 4789999999999999997 4588999999
No 294
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.60 E-value=2.1e-07 Score=54.82 Aligned_cols=38 Identities=29% Similarity=0.799 Sum_probs=35.1
Q ss_pred ceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 014005 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK 143 (432)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd 143 (432)
+++.++++|+ +.|.+++| +|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~------------~~i~~i~~--~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHS------------SSINSIAW--SPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSS------------SSEEEEEE--ETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCC------------CcEEEEEE--ecccccceeeCCCCEEEEEC
Confidence 3567899999 99999999 88999999999999999997
No 295
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.4e-06 Score=74.58 Aligned_cols=251 Identities=7% Similarity=-0.007 Sum_probs=134.8
Q ss_pred ccCCCcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 29 LQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
..|...|..++|||..+ +|..++.+..|+|.|+++.... .++..+
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v---------------------------ssy~a~------- 235 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV---------------------------SSYIAY------- 235 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccceee---------------------------eheecc-------
Confidence 45677899999999887 7888999999999999986532 444444
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcce---eeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV---KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
..+++++|.- .+.+++..|...|.|.+||++..+- ........ .+|..++.-+..+.
T Consensus 236 ------~~~wSC~wDl-de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~-------------~pv~~i~~~~~n~~ 295 (463)
T KOG1645|consen 236 ------NQIWSCCWDL-DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTI-------------NPVHKIAPVQPNKI 295 (463)
T ss_pred ------CCceeeeecc-CCcceeEEeccCceEEEEEccCCCchHhhhhhhhcc-------------CcceeecccCcccc
Confidence 5789999942 3456777888899999999986541 11111111 22333333222222
Q ss_pred eecceeec--cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEE-EE-cCC------eEEEE-eCCCCCcee
Q 014005 185 GYHLEWTE--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDL------RINLW-NLEISDQCF 253 (432)
Q Consensus 185 ~~~~~~~~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~-~d~------~i~lw-d~~~~~~~~ 253 (432)
...++... ...+..|++... ......+.+.+..+...+++..+-.+.++ +. .+- .+-.. |-. .+..+
T Consensus 296 f~~gglLv~~lt~l~f~ei~~s-~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~-dG~pV 373 (463)
T KOG1645|consen 296 FTSGGLLVFALTVLQFYEIVFS-AECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFR-DGFPV 373 (463)
T ss_pred ccccceEEeeehhhhhhhhhcc-ccCCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccc-cCcee
Confidence 22222211 123445554422 11111111123455566666666444444 33 321 11110 000 11111
Q ss_pred eEeecCCCCcCCCCc---ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecce
Q 014005 254 NIVDMKPSNMDDLTE---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (432)
Q Consensus 254 ~~~~~~~~~~~~~~~---~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v 330 (432)
-. .++..+..... .-..+.-.+++.-++.+++..+.+.+||..+.+. ++.+.- ..+|
T Consensus 374 c~--~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev----vQ~l~~--------------~epv 433 (463)
T KOG1645|consen 374 CG--KRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV----VQTLAL--------------SEPV 433 (463)
T ss_pred ee--ecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhe----eeeccc--------------Ccce
Confidence 00 00000000000 0011222345423444566778999999999886 577766 4678
Q ss_pred eEEEEcCC--CCEEEEeeCCeEEEEec
Q 014005 331 SDIKFAND--GQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 331 ~~~~~s~d--g~~l~s~~~~~i~iwd~ 355 (432)
.+++...- +.||+.-.|..++||..
T Consensus 434 ~Dicp~~~n~~syLa~LTd~~v~Iyk~ 460 (463)
T KOG1645|consen 434 LDICPNDTNGSSYLALLTDDRVHIYKN 460 (463)
T ss_pred eecceeecCCcchhhheecceEEEEec
Confidence 77766542 56888878888888864
No 296
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.57 E-value=2.7e-07 Score=54.34 Aligned_cols=32 Identities=34% Similarity=0.403 Sum_probs=31.1
Q ss_pred CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 014005 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (432)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd 296 (432)
.+|.+.|++++|+|++ ++|++++.|+.|++||
T Consensus 8 ~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 8999999999999998 9999999999999997
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.55 E-value=1.3e-06 Score=71.87 Aligned_cols=144 Identities=16% Similarity=0.127 Sum_probs=88.5
Q ss_pred cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEc------CCeEEEEeCCCCCceeeEe
Q 014005 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSAD------DLRINLWNLEISDQCFNIV 256 (432)
Q Consensus 183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------d~~i~lwd~~~~~~~~~~~ 256 (432)
.-+.++.. ||.+.+.+.+.. .+..+.. ......-.+.+....++.+.++. -+..+.|+++ ....+.
T Consensus 102 t~V~~~~~--dg~~~v~s~~~~--~~~~~~i-~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~-p~~t~~-- 173 (319)
T KOG4714|consen 102 NRVCIGYA--DGSLAVFSTDKD--LALMSRI-PSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLD-PIKTLI-- 173 (319)
T ss_pred CceEecCC--CceEEEEechHH--Hhhhhhc-ccccccccccceeecccEEecCCcceEeeccceeeeccc-cccccc--
Confidence 34444444 788888877631 1111111 11111222333444555555543 3345566666 221111
Q ss_pred ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc
Q 014005 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (432)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s 336 (432)
+. .... ..|.+++-+|...+++++|+.||.+-+||+|....+ ...+..| +.+++.+-|+
T Consensus 174 ---~~-~~~~-~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---~S~l~ah-------------k~~i~eV~FH 232 (319)
T KOG4714|consen 174 ---PS-KKAL-DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---VSLLKAH-------------KAEIWEVHFH 232 (319)
T ss_pred ---cc-cccc-ccchhhhCCcccccEEEEecCCCeEEEEEcccccch---HHHHHHh-------------hhhhhheecc
Confidence 00 0112 239999999987678889999999999999987543 5667776 8899999999
Q ss_pred CC-CCEEEEe-eCCeEEEEec
Q 014005 337 ND-GQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 337 ~d-g~~l~s~-~~~~i~iwd~ 355 (432)
|. +..|+++ .||.+.-||-
T Consensus 233 pk~p~~Lft~sedGslw~wda 253 (319)
T KOG4714|consen 233 PKNPEHLFTCSEDGSLWHWDA 253 (319)
T ss_pred CCCchheeEecCCCcEEEEcC
Confidence 95 6677776 5599999998
No 298
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=3.3e-05 Score=70.46 Aligned_cols=232 Identities=9% Similarity=0.089 Sum_probs=142.1
Q ss_pred EEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcc
Q 014005 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (432)
Q Consensus 36 ~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (432)
+-+.|||-|.||+|--.- -|.+|--++-. .++.| .| ..
T Consensus 214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~---------------------------r~~RF-~H-------------p~ 251 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFD---------------------------RIQRF-YH-------------PG 251 (698)
T ss_pred eeEEecCCceEEEEEecc-ceeeecCccHH---------------------------HHHhc-cC-------------CC
Confidence 558899999999997664 58899643321 11122 24 35
Q ss_pred eeEEEEEEcCCCCEEEEEeC-----------CCeEEEEEccCcceeeeeecCCCCcccccccccccccc-ccccCCCCCc
Q 014005 116 INRVRWCAAPNGSMFILSTN-----------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF-MNEHNPPSFA 183 (432)
Q Consensus 116 v~~l~~~~s~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~ 183 (432)
|.-+.| ||+.++|+|-+. ...+.|||+.+|.+++.......+ ..+ --..|+.+.+
T Consensus 252 Vq~idf--SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~-----------~~~WP~frWS~DdK 318 (698)
T KOG2314|consen 252 VQFIDF--SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP-----------YLKWPIFRWSHDDK 318 (698)
T ss_pred ceeeec--CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC-----------ccccceEEeccCCc
Confidence 788899 899999998642 257999999999865433221111 111 1256888888
Q ss_pred ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--c----CCeEEEEeCCCCCceeeEee
Q 014005 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D----DLRINLWNLEISDQCFNIVD 257 (432)
Q Consensus 184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~----d~~i~lwd~~~~~~~~~~~~ 257 (432)
+++.... ..+.||+... ...+-. +.-.-..|....|+|.++.||.- . -..+.+-.+. .++.+++.
T Consensus 319 y~Arm~~---~sisIyEtps---f~lld~-Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evP-s~~~iRt~- 389 (698)
T KOG2314|consen 319 YFARMTG---NSISIYETPS---FMLLDK-KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVP-SKREIRTK- 389 (698)
T ss_pred eeEEecc---ceEEEEecCc---eeeecc-cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecC-ccceeeec-
Confidence 8877653 5677777651 111100 01234578889999999888843 2 2345556665 34444432
Q ss_pred cCCCCcCCCCcceEEEEEcCCCCcEEEEEe----------CCCeEEEEEccccccccccceeecccccccCCccceeeee
Q 014005 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (432)
Q Consensus 258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 327 (432)
.-+.-.-..+-|-.+| .+|+.-- .-..+.|+.++..... +..+.- .
T Consensus 390 ------nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp---ve~vel--------------k 445 (698)
T KOG2314|consen 390 ------NLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP---VEVVEL--------------K 445 (698)
T ss_pred ------cceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCC---ceeeec--------------c
Confidence 2222222345566666 5655421 1124667777755443 444444 5
Q ss_pred cceeEEEEcCCCCEEEE--eeC--CeEEEEec
Q 014005 328 ASISDIKFANDGQHLLS--RDY--MNLKVFRY 355 (432)
Q Consensus 328 ~~v~~~~~s~dg~~l~s--~~~--~~i~iwd~ 355 (432)
..|...+|-|.|..++. |.+ .++.+|.+
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~ 477 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAV 477 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEe
Confidence 78999999999987765 544 88999988
No 299
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.55 E-value=0.00055 Score=61.60 Aligned_cols=217 Identities=9% Similarity=0.053 Sum_probs=113.8
Q ss_pred cCCCCEEEEEe----------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 124 APNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 124 s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
+||++.++++. .+..|.+||..+.+...-......+. .........+++++++++++.....++
T Consensus 54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~------~~~~~~~~~~~ls~dgk~l~V~n~~p~ 127 (352)
T TIGR02658 54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR------FLVGTYPWMTSLTPDNKTLLFYQFSPS 127 (352)
T ss_pred CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch------hhccCccceEEECCCCCEEEEecCCCC
Confidence 89999888875 47899999999987544333221110 000122346889999999998888778
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce-EE
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-TS 272 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v-~~ 272 (432)
..+.+.|+. +.+.+..+.- .+...-...+ +..+++-+.||......++..++.. .-..+ -+..-...+ ..
T Consensus 128 ~~V~VvD~~---~~kvv~ei~v--p~~~~vy~t~-e~~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~--vf~~~~~~v~~r 198 (352)
T TIGR02658 128 PAVGVVDLE---GKAFVRMMDV--PDCYHIFPTA-NDTFFMHCRDGSLAKVGYGTKGNPK-IKPTE--VFHPEDEYLINH 198 (352)
T ss_pred CEEEEEECC---CCcEEEEEeC--CCCcEEEEec-CCccEEEeecCceEEEEecCCCceE-Eeeee--eecCCccccccC
Confidence 999999998 6666666522 1112222222 2222332334444443333222211 10000 001100000 00
Q ss_pred EEEcC-CCCcEEEEEeCCCeEEEEEcccccccc-ccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee----
Q 014005 273 AEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---- 346 (432)
Q Consensus 273 ~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~---- 346 (432)
-.|.+ ++ +.+..... |+|.+.|+....... .....+......... ..+.+.-++++++|+.+....
T Consensus 199 P~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~w------rP~g~q~ia~~~dg~~lyV~~~~~~ 270 (352)
T TIGR02658 199 PAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGW------RPGGWQQVAYHRARDRIYLLADQRA 270 (352)
T ss_pred CceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeecccccccccc------CCCcceeEEEcCCCCEEEEEecCCc
Confidence 14566 76 66665555 999999975433211 001222110000000 123344599999988777631
Q ss_pred -----C--CeEEEEec---CcceeEee
Q 014005 347 -----Y--MNLKVFRY---EPVMTLSF 363 (432)
Q Consensus 347 -----~--~~i~iwd~---~~~~~~~~ 363 (432)
+ +.|.++|. +.+..+..
T Consensus 271 ~~thk~~~~~V~ViD~~t~kvi~~i~v 297 (352)
T TIGR02658 271 KWTHKTASRFLFVVDAKTGKRLRKIEL 297 (352)
T ss_pred cccccCCCCEEEEEECCCCeEEEEEeC
Confidence 1 58999999 45555543
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=2.9e-06 Score=80.49 Aligned_cols=198 Identities=11% Similarity=0.063 Sum_probs=131.0
Q ss_pred CccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 26 ~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
.+.+...+.++|++++ +++|+.|..+|.|++.+..... .+...|.
T Consensus 33 ~~~~~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-----------------------------~~~~~~s---- 77 (846)
T KOG2066|consen 33 VKNFLQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-----------------------------KTNFDHS---- 77 (846)
T ss_pred cHHHHhhhHHHHHHhh--cceeeeccccceEEEEecCCcc-----------------------------ccccccc----
Confidence 3345557789999987 7899999999999999976542 1222333
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC----
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS---- 181 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---- 181 (432)
.. ..+|.++++|+.||+|.|-.+.+.+......+. -++..++++|+
T Consensus 78 --------~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~--------------rpiksial~Pd~~~~ 127 (846)
T KOG2066|consen 78 --------SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK--------------RPIKSIALHPDFSRQ 127 (846)
T ss_pred --------cc--------ccCCceEEEecCCCcEEEeeccCCccceeEecC--------------CcceeEEeccchhhh
Confidence 11 357999999999999999999887754444443 46788888887
Q ss_pred -CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCC
Q 014005 182 -FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKP 260 (432)
Q Consensus 182 -~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~ 260 (432)
.+..++|+. .| +.++.-+.......+ .+ ....+.|.++.| .|+++|-++|-.|++||+. .++.+..++...
T Consensus 128 ~sk~fv~GG~--ag-lvL~er~wlgnk~~v-~l-~~~eG~I~~i~W--~g~lIAWand~Gv~vyd~~-~~~~l~~i~~p~ 199 (846)
T KOG2066|consen 128 QSKQFVSGGM--AG-LVLSERNWLGNKDSV-VL-SEGEGPIHSIKW--RGNLIAWANDDGVKVYDTP-TRQRLTNIPPPS 199 (846)
T ss_pred hhhheeecCc--ce-EEEehhhhhcCccce-ee-ecCccceEEEEe--cCcEEEEecCCCcEEEecc-ccceeeccCCCC
Confidence 445566655 44 666654422122222 23 567889999999 4678888878889999999 555544331111
Q ss_pred CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccc
Q 014005 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (432)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~ 300 (432)
...........+.|.++. .|+.| ...+|+|..++.+
T Consensus 200 -~~~R~e~fpphl~W~~~~--~LVIG-W~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 200 -QSVRPELFPPHLHWQDED--RLVIG-WGDSVKICSIKKR 235 (846)
T ss_pred -CCCCcccCCCceEecCCC--eEEEe-cCCeEEEEEEecc
Confidence 111112234567888875 44445 4458999998843
No 301
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=1.9e-05 Score=75.73 Aligned_cols=232 Identities=13% Similarity=0.146 Sum_probs=140.1
Q ss_pred hhhhhhhhcCCCCCccccCCC-cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCc
Q 014005 13 EWKCSQAFGERNPDEELQDVD-IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY 91 (432)
Q Consensus 13 ~w~~~~~~~~~~~~~~~~h~~-~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 91 (432)
-|+=-+.|..+.......-.+ .|+| +++.+..++.|+.+|.|.+.+-.-
T Consensus 5 qWrrF~lFq~~~i~~~~~~~G~~isc--~~s~~~~vvigt~~G~V~~Ln~s~---------------------------- 54 (933)
T KOG2114|consen 5 QWRRFSLFQWKEIPSLENFVGNAISC--CSSSTGSVVIGTADGRVVILNSSF---------------------------- 54 (933)
T ss_pred hcceeeeeeeeecCCcccCCCCceeE--EcCCCceEEEeeccccEEEecccc----------------------------
Confidence 354444444333322222223 5665 458888999999999888776432
Q ss_pred ceeeeeecCCccccccchhhhhcc-eeEEEEEEcCCCCEEEEEeCCC-----eEEEEEccCcc----eeeeeecCCCCcc
Q 014005 92 RYKTEFQSHEPEFDYLKSLEIEEK-INRVRWCAAPNGSMFILSTNDK-----TIKLWKVRDQK----VKKIKEMDHFPFV 161 (432)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~-v~~l~~~~s~~~~~l~s~~~d~-----~i~iwd~~~~~----~~~~~~~~~~~~~ 161 (432)
..+..+++++ .. |..+.. ..+..+|++-+.|+ .+++|+++.-+ ...+..+...
T Consensus 55 ~~~~~fqa~~------------~siv~~L~~--~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~--- 117 (933)
T KOG2114|consen 55 QLIRGFQAYE------------QSIVQFLYI--LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIF--- 117 (933)
T ss_pred eeeehheecc------------hhhhhHhhc--ccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeee---
Confidence 2335677776 55 333333 22334666655554 59999996432 1111111000
Q ss_pred ccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe
Q 014005 162 SSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR 240 (432)
Q Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~ 240 (432)
.........++..++.+.+-..++.|.. +|.|..+.-+..........+.....++|+.+++..++..++.. .-..
T Consensus 118 -~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~--nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~ 194 (933)
T KOG2114|consen 118 -TIKNPTNPSPASSLAVSEDLKTIVCGFT--NGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQ 194 (933)
T ss_pred -ccCCCCCCCcceEEEEEccccEEEEEec--CcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecce
Confidence 0011112366777888888888888888 99988886442212222233324567799999999988874444 7778
Q ss_pred EEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccc
Q 014005 241 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303 (432)
Q Consensus 241 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~ 303 (432)
|.+|.+.........+ ..|....+|..+++.. ..|++|+. .-+.+||....+.|
T Consensus 195 V~~y~l~gr~p~~~~l-------d~~G~~lnCss~~~~t-~qfIca~~-e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 195 VMLYSLSGRTPSLKVL-------DNNGISLNCSSFSDGT-YQFICAGS-EFLYFYDSDGRGPC 248 (933)
T ss_pred eEEEEecCCCcceeee-------ccCCccceeeecCCCC-ccEEEecC-ceEEEEcCCCccee
Confidence 9999998222123333 6777889999999876 54665654 46999998866654
No 302
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=1.3e-07 Score=90.14 Aligned_cols=188 Identities=7% Similarity=0.107 Sum_probs=130.2
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
...+|++| +.+.+.|+.|+..|.|+++++.+|.. ....+.|. +.++.+..+.++....+.+....
T Consensus 1102 ~~fTc~af--s~~~~hL~vG~~~Geik~~nv~sG~~--e~s~ncH~-----------SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1102 ALFTCIAF--SGGTNHLAVGSHAGEIKIFNVSSGSM--EESVNCHQ-----------SAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred cceeeEEe--ecCCceEEeeeccceEEEEEccCccc--cccccccc-----------cccccccccCCcceeeeeccccC
Confidence 78899999 78889999999999999999999873 33455555 78888888889888877665434
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (432)
-...+|++.. .....++| . .-.++.|+.....-+.| ......+||++ +...+.++ +. ...+.+..-+.
T Consensus 1167 PlsaLW~~~s--~~~~~Hsf-~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvq-T~~~l~ty-lt--~~~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1167 PLSALWDASS--TGGPRHSF-D----EDKAVKFSNSLQFRALGTEADDALLYDVQ-TCSPLQTY-LT--DTVTSSYSNNL 1235 (1516)
T ss_pred chHHHhcccc--ccCccccc-c----ccceeehhhhHHHHHhcccccceEEEecc-cCcHHHHh-cC--cchhhhhhccc
Confidence 4677898874 44555555 1 34567888776666666 66778899999 44444332 00 01122223477
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEE
Q 014005 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKV 352 (432)
Q Consensus 273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~i 352 (432)
..|+|+. .+++ .||. +||.|..+. ++.|.. ..--..-.|+|.|.-++.-+. |
T Consensus 1236 a~FsP~D-~LIl---ndGv--LWDvR~~~a----Ih~FD~--------------ft~~~~G~FHP~g~eVIINSE----I 1287 (1516)
T KOG1832|consen 1236 AHFSPCD-TLIL---NDGV--LWDVRIPEA----IHRFDQ--------------FTDYGGGGFHPSGNEVIINSE----I 1287 (1516)
T ss_pred cccCCCc-ceEe---eCce--eeeeccHHH----Hhhhhh--------------heecccccccCCCceEEeech----h
Confidence 8999998 7776 6764 899997654 456654 122234579999988887653 7
Q ss_pred Eec
Q 014005 353 FRY 355 (432)
Q Consensus 353 wd~ 355 (432)
||+
T Consensus 1288 wD~ 1290 (1516)
T KOG1832|consen 1288 WDM 1290 (1516)
T ss_pred hhh
Confidence 887
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.50 E-value=9.1e-05 Score=73.96 Aligned_cols=240 Identities=13% Similarity=0.096 Sum_probs=133.6
Q ss_pred CcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 112 (432)
+.|.++.|..++.-++.+..+|.|.+-|.++... .+-|..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-----------------------------eivg~v----------- 108 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-----------------------------EIVGNV----------- 108 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-----------------------------eeeeec-----------
Confidence 5899999999999899999999999998877542 222322
Q ss_pred hcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
+..|.+++| +||++.++..+.++++.+-.-. -. .+.....+.+. .+.+....+-|-...+.+-..
T Consensus 109 d~GI~aasw--S~Dee~l~liT~~~tll~mT~~-f~--~i~E~~L~~d~------~~~sk~v~VGwGrkeTqfrgs---- 173 (1265)
T KOG1920|consen 109 DNGISAASW--SPDEELLALITGRQTLLFMTKD-FE--PIAEKPLDADD------ERKSKFVNVGWGRKETQFRGS---- 173 (1265)
T ss_pred cCceEEEee--cCCCcEEEEEeCCcEEEEEecc-cc--chhcccccccc------ccccccceecccccceeeecc----
Confidence 178999999 9999999999888877764321 11 11100000000 000111111121111000000
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-----cC-CeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----DD-LRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-----~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
.|.....+... ..+.... ....+.=.++.|--||+++|+. .+ ..|++||.+ +..-.+- ...
T Consensus 174 ~gr~~~~~~~~--~ek~~~~--~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE--g~Lns~s-------e~~ 240 (1265)
T KOG1920|consen 174 EGRQAARQKIE--KEKALEQ--IEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE--GALNSTS-------EPV 240 (1265)
T ss_pred hhhhccccccc--ccccccc--hhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc--chhhccc-------Ccc
Confidence 00000000000 0000000 0122334578999999999973 24 799999988 3221110 222
Q ss_pred CcceEEEEEcCCCCcEEEEEe---CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005 267 TEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 343 (432)
.+-=.+++|-|.| .++|+-. +|+.|.+|.-+ |-.- ..|.- +. +.....+..++|+.++..||
T Consensus 241 ~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErN-GL~h----g~f~l-~~--------p~de~~ve~L~Wns~sdiLA 305 (1265)
T KOG1920|consen 241 EGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERN-GLRH----GEFVL-PF--------PLDEKEVEELAWNSNSDILA 305 (1265)
T ss_pred cccccceeecCCC-CeEeeeeecCCCCcEEEEecC-Cccc----ccccc-CC--------cccccchheeeecCCCCcee
Confidence 2334578999998 8888753 56679999844 4321 11111 00 01134499999999999999
Q ss_pred E---eeC-CeEEEEec
Q 014005 344 S---RDY-MNLKVFRY 355 (432)
Q Consensus 344 s---~~~-~~i~iwd~ 355 (432)
. ... ..|++|-+
T Consensus 306 v~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 306 VVTSNLENSLVQLWTT 321 (1265)
T ss_pred eeecccccceEEEEEe
Confidence 7 333 55999988
No 304
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.43 E-value=0.0003 Score=65.50 Aligned_cols=258 Identities=12% Similarity=0.029 Sum_probs=133.0
Q ss_pred CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEE
Q 014005 44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (432)
Q Consensus 44 g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~ 123 (432)
+..+++++.+|.+..+|..+++.. ..+.... .......
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~---------------------------W~~~~~~------------~~~~~p~--- 102 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRL---------------------------WRVDLDE------------RLSGGVG--- 102 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEe---------------------------eeecCCC------------CcccceE---
Confidence 667888888999999998887643 2222111 1011122
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecc
Q 014005 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN 203 (432)
Q Consensus 124 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~ 203 (432)
.++..++.++.++.+..+|..+++..-..... +.+...... .+..++.+.. ++.+..+|.+
T Consensus 103 -v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--------------~~~~~~p~v-~~~~v~v~~~--~g~l~a~d~~- 163 (377)
T TIGR03300 103 -ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS--------------SEVLSPPLV-ANGLVVVRTN--DGRLTALDAA- 163 (377)
T ss_pred -EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC--------------ceeecCCEE-ECCEEEEECC--CCeEEEEEcC-
Confidence 24667888888999999999888754322221 111100000 1223333333 7888888887
Q ss_pred cccceeeEEeecCCCCCe-----eEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC--cc---e-E
Q 014005 204 SVHARCQKVYPHAHDFNI-----NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EV---I-T 271 (432)
Q Consensus 204 ~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~--~~---v-~ 271 (432)
+++.+..+ ......+ .+.... + ..++.+ .++.+..+|.+ +++.+........ .+.. .. + .
T Consensus 164 --tG~~~W~~-~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~-tG~~~W~~~~~~~--~g~~~~~~~~~~~~ 235 (377)
T TIGR03300 164 --TGERLWTY-SRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQ-TGQPLWEQRVALP--KGRTELERLVDVDG 235 (377)
T ss_pred --CCceeeEE-ccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEcc-CCCEeeeeccccC--CCCCchhhhhccCC
Confidence 55554444 1111111 011111 2 366677 88999999998 5554432211000 0000 00 0 1
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeE
Q 014005 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNL 350 (432)
Q Consensus 272 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i 350 (432)
+..+ .+ ..++.++.+|.+..+|..+|+.. -.... ........ ++..+..+ .+|.+
T Consensus 236 ~p~~--~~-~~vy~~~~~g~l~a~d~~tG~~~----W~~~~---------------~~~~~p~~--~~~~vyv~~~~G~l 291 (377)
T TIGR03300 236 DPVV--DG-GQVYAVSYQGRVAALDLRSGRVL----WKRDA---------------SSYQGPAV--DDNRLYVTDADGVV 291 (377)
T ss_pred ccEE--EC-CEEEEEEcCCEEEEEECCCCcEE----Eeecc---------------CCccCceE--eCCEEEEECCCCeE
Confidence 1112 23 56777888999999999988752 22211 11112222 24455544 45999
Q ss_pred EEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005 351 KVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG 406 (432)
Q Consensus 351 ~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 406 (432)
..+|. +.+........ .....+.. .. -.+..++.+|.+.+++..
T Consensus 292 ~~~d~~tG~~~W~~~~~~~------~~~ssp~i---~g---~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 292 VALDRRSGSELWKNDELKY------RQLTAPAV---VG---GYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred EEEECCCCcEEEccccccC------CccccCEE---EC---CEEEEEeCCCEEEEEECC
Confidence 99998 22222211000 00011110 11 146677889999999843
No 305
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.37 E-value=9.1e-06 Score=68.72 Aligned_cols=173 Identities=12% Similarity=0.164 Sum_probs=106.5
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCCccccccccccccccccccCCCCCccee-cceee
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY-HLEWT 191 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~ 191 (432)
.-|+++++ +.|.+.++++. |=.|.+|+++-.. .-.+.....+. -..-..-|++..|+|....+. -.+.
T Consensus 173 yhiNSiS~--NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~n------meeLteVItSaeFhp~~cn~fmYSsS- 242 (460)
T COG5170 173 YHINSISF--NSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHN------MEELTEVITSAEFHPEMCNVFMYSSS- 242 (460)
T ss_pred eEeeeeee--cCchheeeecc-ceeeeeccccccCCceEEEeccCcc------HHHHHHHHhhcccCHhHcceEEEecC-
Confidence 78999999 77887777774 6789999986432 11111111111 000124566777887644332 2222
Q ss_pred ccceEEEEeecccccce-eeEEe-----------ecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecC
Q 014005 192 ENMATKIANVGNSVHAR-CQKVY-----------PHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMK 259 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~-~~~~~-----------~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~ 259 (432)
.|.|++-|++...... ..+.+ ..+-...|..+.|+++|+++++-+--++++||.+....++.++++.
T Consensus 243 -kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 243 -KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred -CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechH
Confidence 7899999988421100 00111 0223457889999999999998888899999999878888876332
Q ss_pred CCCcC-----CCCcc---eEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005 260 PSNMD-----DLTEV---ITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (432)
Q Consensus 260 ~~~~~-----~~~~~---v~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 298 (432)
..-+. --... -..+.|+-|. ..+++|+..+..-+|-..
T Consensus 322 ~~l~~~l~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 322 CDLMDELNDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred HHHHHHHHhhhhccceeeeEEEEecCCc-ccccccccccceeeeccc
Confidence 11000 00112 2457788887 888889888877777643
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.35 E-value=0.00058 Score=59.37 Aligned_cols=212 Identities=14% Similarity=0.085 Sum_probs=125.7
Q ss_pred cceeEEEEEEcC-CCCEEEEEeCCC-eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 114 EKINRVRWCAAP-NGSMFILSTNDK-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 114 ~~v~~l~~~~s~-~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
.....++. +| ....++.+-.-| ...+||..+++......-.... --.---.|++++.++++....
T Consensus 5 ~RgH~~a~--~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR-----------HFyGHg~fs~dG~~LytTEnd 71 (305)
T PF07433_consen 5 ARGHGVAA--HPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR-----------HFYGHGVFSPDGRLLYTTEND 71 (305)
T ss_pred ccccceee--CCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC-----------EEecCEEEcCCCCEEEEeccc
Confidence 44556777 66 455666676554 4778999888754433221111 112235789999999887542
Q ss_pred c---cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcC--------CeEEEEeCCCCCceeeEeecCC
Q 014005 192 E---NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD--------LRINLWNLEISDQCFNIVDMKP 260 (432)
Q Consensus 192 ~---~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d--------~~i~lwd~~~~~~~~~~~~~~~ 260 (432)
. .|.|-|||... .-+.+..+ ..+.-....+.+.|||+.|+++.. |..++ +++++...+..++...
T Consensus 72 ~~~g~G~IgVyd~~~--~~~ri~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 72 YETGRGVIGVYDAAR--GYRRIGEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARS 147 (305)
T ss_pred cCCCcEEEEEEECcC--CcEEEeEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEecCC
Confidence 2 67999999983 34455556 666667788999999988887632 22222 2332222222221111
Q ss_pred C------Cc--CCCCcceEEEEEcCCCCcEEEEEeCCC-------eEEEEEccccccccccceeecccccccCCccceee
Q 014005 261 S------NM--DDLTEVITSAEFHPIYCNLLAYSSSRG-------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (432)
Q Consensus 261 ~------~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 325 (432)
. .+ ..|...|+.++++++| ..++..-..| .+.+++.. +. +..+.. + ......
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g--~~----~~~~~~-p-----~~~~~~ 214 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRG--GA----LRLLPA-P-----EEQWRR 214 (305)
T ss_pred CceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCC--Cc----ceeccC-C-----hHHHHh
Confidence 1 22 3467789999999998 6665544443 23333322 11 122221 0 001111
Q ss_pred eecceeEEEEcCCCCEEEEeeC--CeEEEEec
Q 014005 326 IIASISDIKFANDGQHLLSRDY--MNLKVFRY 355 (432)
Q Consensus 326 ~~~~v~~~~~s~dg~~l~s~~~--~~i~iwd~ 355 (432)
..+.+-+++++++|.+++..+- +++.+||.
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~ 246 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA 246 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence 2468999999999998876533 99999999
No 307
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.29 E-value=7.4e-05 Score=69.22 Aligned_cols=127 Identities=17% Similarity=0.187 Sum_probs=83.0
Q ss_pred EEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEE
Q 014005 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 274 (432)
Q Consensus 196 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 274 (432)
-.+|++... ..+++....-.....+.+.+++|+...++.| .||+|.+||.. .+.... ....-.++.++
T Consensus 238 ~ciYE~~r~-klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~-~~~t~~---------~ka~~~P~~ia 306 (545)
T PF11768_consen 238 SCIYECSRN-KLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTT-RGVTLL---------AKAEFIPTLIA 306 (545)
T ss_pred EEEEEeecC-ceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcC-CCeeee---------eeecccceEEE
Confidence 345555422 2333333334677899999999999999999 99999999998 332211 22234478899
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCc-----cceeeeecceeEEEEcCCCC
Q 014005 275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK-----SFFTEIIASISDIKFANDGQ 340 (432)
Q Consensus 275 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~-----~~~~~~~~~v~~~~~s~dg~ 340 (432)
|||+| .++++|+..|.+.+||+.-+... .+.+.+ ++.+. +.+-.+...+..+.|++...
T Consensus 307 WHp~g-ai~~V~s~qGelQ~FD~ALspi~---~qLlsE---d~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~ 370 (545)
T PF11768_consen 307 WHPDG-AIFVVGSEQGELQCFDMALSPIK---MQLLSE---DATPKSTLQLSKYFRVSSSLVHIQWAPAPQ 370 (545)
T ss_pred EcCCC-cEEEEEcCCceEEEEEeecCccc---eeeccc---cCCCccEEeeehhccCcchhheeEeccCCC
Confidence 99999 99999999999999999865432 222222 22221 11112345677888886543
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.28 E-value=6e-06 Score=70.80 Aligned_cols=125 Identities=10% Similarity=0.113 Sum_probs=88.3
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc---eeeeeecCCCCccccccccccccccccccCCC-CCcceecce
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHGYHLE 189 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~ 189 (432)
+.|.++.| ...+.+++.|+..|.|...|++.+. ......+ .| .+.|.++..-. +..++....
T Consensus 253 sDVfAlQf--~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh-----------~Ssvtslq~Lq~s~q~LmaS~ 318 (425)
T KOG2695|consen 253 SDVFALQF--AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YH-----------DSSVTSLQILQFSQQKLMASD 318 (425)
T ss_pred hhHHHHHh--cccCCeeEecccCCcEEEEEeeecccCCCcceEEE-Ec-----------CcchhhhhhhccccceEeecc
Confidence 67899999 6678899999999999999998652 1111111 12 26777776655 778888888
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCee--EEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEe
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNIN--SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV 256 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~ 256 (432)
. +|.|++||++....++.++.+ .+|-..-. -+.+.+....++++ +|...++|.++ .+..+.++
T Consensus 319 M--~gkikLyD~R~~K~~~~V~qY-eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~-~ghLl~ti 384 (425)
T KOG2695|consen 319 M--TGKIKLYDLRATKCKKSVMQY-EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD-SGHLLCTI 384 (425)
T ss_pred C--cCceeEeeehhhhcccceeee-ecccccccccccccccccceEEEccCeeEEEEEecc-cCceeecc
Confidence 8 999999999944333347777 67654322 23345556666666 99999999999 67766654
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.27 E-value=1.2e-05 Score=77.41 Aligned_cols=185 Identities=12% Similarity=0.129 Sum_probs=128.4
Q ss_pred CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccc
Q 014005 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV 205 (432)
Q Consensus 126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~ 205 (432)
++..++-|+....+..+|+.+.+..+...... +.+ .....+++++.+|.. .|+|.+-|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a-------------~~v--~imR~Nnr~lf~G~t--~G~V~LrD~~--- 205 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA-------------SGV--TIMRYNNRNLFCGDT--RGTVFLRDPN--- 205 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC-------------Cce--EEEEecCcEEEeecc--cceEEeecCC---
Confidence 45567778777888888998877555444321 122 223345677888887 8999999999
Q ss_pred cceeeEEeecCCCCCeeEEEeCCCCCEEEEE--c--------CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEE
Q 014005 206 HARCQKVYPHAHDFNINSISNNSDCETFVSA--D--------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 275 (432)
Q Consensus 206 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~--------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 275 (432)
+.+.++++ ..|.+.|.++.. .|+.|+++ + |.-|++||+++ -+.+..+ .-+.+ ..-+.|
T Consensus 206 s~~~iht~-~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRm-mral~PI-------~~~~~-P~flrf 273 (1118)
T KOG1275|consen 206 SFETIHTF-DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRM-MRALSPI-------QFPYG-PQFLRF 273 (1118)
T ss_pred cCceeeee-eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhh-hhccCCc-------ccccC-chhhhh
Confidence 78889999 899999988766 56677653 3 55689999994 3333221 22222 256789
Q ss_pred cCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEe
Q 014005 276 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFR 354 (432)
Q Consensus 276 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd 354 (432)
+|.-+..+++++..|...+-|..+-.... ...+.-|+. ...+.++++|++|..||.|+. |.|.+|.
T Consensus 274 ~Psl~t~~~V~S~sGq~q~vd~~~lsNP~--~~~~~v~p~-----------~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 274 HPSLTTRLAVTSQSGQFQFVDTATLSNPP--AGVKMVNPN-----------GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccceEEEEecccceeeccccccCCCc--cceeEEccC-----------CCcceeEEecCCCceEEEecccCcEeeec
Confidence 99887889999999999999944321110 122222211 356999999999999999976 9999997
Q ss_pred c
Q 014005 355 Y 355 (432)
Q Consensus 355 ~ 355 (432)
-
T Consensus 341 ~ 341 (1118)
T KOG1275|consen 341 D 341 (1118)
T ss_pred C
Confidence 6
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.25 E-value=0.00079 Score=58.48 Aligned_cols=201 Identities=11% Similarity=0.050 Sum_probs=118.1
Q ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCC-CCCcceecceeeccce
Q 014005 118 RVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP-PSFAHGYHLEWTENMA 195 (432)
Q Consensus 118 ~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~ 195 (432)
++.| .+ ++.++++-...+.|..|+..++....... .....+++. +++.++++. .+.
T Consensus 4 gp~~--d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~----------------~~~~G~~~~~~~g~l~v~~----~~~ 61 (246)
T PF08450_consen 4 GPVW--DPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL----------------PGPNGMAFDRPDGRLYVAD----SGG 61 (246)
T ss_dssp EEEE--ETTTTEEEEEETTTTEEEEEETTTTEEEEEES----------------SSEEEEEEECTTSEEEEEE----TTC
T ss_pred ceEE--ECCCCEEEEEEcCCCEEEEEECCCCeEEEEec----------------CCCceEEEEccCCEEEEEE----cCc
Confidence 4677 55 67677777778999999998876443221 123445555 555554443 234
Q ss_pred EEEEeecccccceeeEEee---cC-CCCCeeEEEeCCCCCEEEEE-cC--------CeEEEEeCCCCCceeeEeecCCCC
Q 014005 196 TKIANVGNSVHARCQKVYP---HA-HDFNINSISNNSDCETFVSA-DD--------LRINLWNLEISDQCFNIVDMKPSN 262 (432)
Q Consensus 196 v~i~d~~~~~~~~~~~~~~---~~-~~~~i~~~~~~~~~~~l~~~-~d--------~~i~lwd~~~~~~~~~~~~~~~~~ 262 (432)
+.++|.. +++...... .. .....+.+++.|+|++.++. .. |.+..++.. ++....
T Consensus 62 ~~~~d~~---~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~------- 129 (246)
T PF08450_consen 62 IAVVDPD---TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVV------- 129 (246)
T ss_dssp EEEEETT---TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEE-------
T ss_pred eEEEecC---CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--CeEEEE-------
Confidence 4555776 333322221 11 45678899999999977765 32 446666655 332222
Q ss_pred cCCCCcceEEEEEcCCCCcEE-EEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005 263 MDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (432)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 341 (432)
...-...+.++|+|++ +.| ++-+..+.|..+++..........+.+..-+ ...+..-.+++..+|++
T Consensus 130 -~~~~~~pNGi~~s~dg-~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~----------~~~g~pDG~~vD~~G~l 197 (246)
T PF08450_consen 130 -ADGLGFPNGIAFSPDG-KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP----------GGPGYPDGLAVDSDGNL 197 (246)
T ss_dssp -EEEESSEEEEEEETTS-SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S----------SSSCEEEEEEEBTTS-E
T ss_pred -ecCcccccceEECCcc-hheeecccccceeEEEeccccccceeeeeeEEEcC----------CCCcCCCcceEcCCCCE
Confidence 2223457899999999 655 4667788999999864321000012221100 00124778999999988
Q ss_pred EEEee-CCeEEEEec--CcceeEeec
Q 014005 342 LLSRD-YMNLKVFRY--EPVMTLSFC 364 (432)
Q Consensus 342 l~s~~-~~~i~iwd~--~~~~~~~~~ 364 (432)
.++.- .+.|.++|. +.+..+..+
T Consensus 198 ~va~~~~~~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 198 WVADWGGGRIVVFDPDGKLLREIELP 223 (246)
T ss_dssp EEEEETTTEEEEEETTSCEEEEEE-S
T ss_pred EEEEcCCCEEEEECCCccEEEEEcCC
Confidence 77753 499999999 666666655
No 311
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.23 E-value=0.00034 Score=65.46 Aligned_cols=106 Identities=8% Similarity=0.077 Sum_probs=62.8
Q ss_pred CeeEEEeCCCCCEEEEE--c--CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe-CCC--eE
Q 014005 220 NINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRG--FV 292 (432)
Q Consensus 220 ~i~~~~~~~~~~~l~~~--~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i 292 (432)
......|+|||+.++.. . +..|.++|+. ++.... + ..+........|+||| +.|+..+ ..+ .|
T Consensus 234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~-~g~~~~-L-------T~~~~~d~~p~~SPDG-~~I~F~Sdr~g~~~I 303 (419)
T PRK04043 234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN-TKTLTQ-I-------TNYPGIDVNGNFVEDD-KRIVFVSDRLGYPNI 303 (419)
T ss_pred cEEeeEECCCCCEEEEEEccCCCcEEEEEECC-CCcEEE-c-------ccCCCccCccEECCCC-CEEEEEECCCCCceE
Confidence 34456799999887754 2 4567788887 443322 2 2222223456899999 5555444 333 57
Q ss_pred EEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eC---------CeEEEEec
Q 014005 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY---------MNLKVFRY 355 (432)
Q Consensus 293 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~---------~~i~iwd~ 355 (432)
.+.|+.+++. +.+... ... ...|||||++|+-. .. ..|.+.|+
T Consensus 304 y~~dl~~g~~-----~rlt~~-------------g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~ 356 (419)
T PRK04043 304 FMKKLNSGSV-----EQVVFH-------------GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIST 356 (419)
T ss_pred EEEECCCCCe-----EeCccC-------------CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEEC
Confidence 7888877664 222220 111 24899999988763 21 25666676
No 312
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.19 E-value=0.0013 Score=60.69 Aligned_cols=276 Identities=14% Similarity=0.076 Sum_probs=133.2
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhh-------c---ccccc-c--cccC----Ccceeee
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELE-------K---QMDFT-S--TSHP----EYRYKTE 96 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-------~---~~~~~-~--~~~p----~~~~~~~ 96 (432)
.|++++|+++..-|++|...|.|.||.....+.... +.....++ . .+..+ + ...| ...+..-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN-REQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc-cCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 589999999988899999999999999876653310 00000000 0 01100 0 0111 1223333
Q ss_pred eecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccc
Q 014005 97 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 176 (432)
Q Consensus 97 ~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 176 (432)
++..+ ++|++++. + |=-+++.|..+|.+.|.|+++..+........+. ........+.++
T Consensus 82 ~~~~~------------g~vtal~~--S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~-----~~~~~~~~vt~i 141 (395)
T PF08596_consen 82 LDAKQ------------GPVTALKN--S-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESF-----LSKSSSSYVTSI 141 (395)
T ss_dssp E---S-------------SEEEEEE----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG-------T-SS----EEEE
T ss_pred eeccC------------CcEeEEec--C-CCcEEEEEecCCcEEEEECCCCeEEeeccccccc-----cccccccCeeEE
Confidence 34444 89999998 5 4449999999999999999877644332222200 011122344445
Q ss_pred cCC-----CC---CcceecceeeccceEEEEeecccccc----eeeEEeecCCCCCeeEEE-eCCC-C------------
Q 014005 177 HNP-----PS---FAHGYHLEWTENMATKIANVGNSVHA----RCQKVYPHAHDFNINSIS-NNSD-C------------ 230 (432)
Q Consensus 177 ~~~-----~~---~~~~~~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~~~~~i~~~~-~~~~-~------------ 230 (432)
.|. .+ .-.+..|+. .|.+.+|.+.-...+ ...... ..+.+.|..+. ++.+ |
T Consensus 142 eF~vm~~~~D~ySSi~L~vGTn--~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~ 218 (395)
T PF08596_consen 142 EFSVMTLGGDGYSSICLLVGTN--SGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESALATISAMQG 218 (395)
T ss_dssp EEEEEE-TTSSSEEEEEEEEET--TSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHG
T ss_pred EEEEEecCCCcccceEEEEEeC--CCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCcccCchhHhhc
Confidence 443 22 245566666 788888876521112 111111 24556665554 3222 1
Q ss_pred -------C-EEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEE-----cCCCCcEEEEEeCCCeEEEEEc
Q 014005 231 -------E-TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF-----HPIYCNLLAYSSSRGFVRLVDM 297 (432)
Q Consensus 231 -------~-~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~p~~~~~l~~~~~dg~i~iwd~ 297 (432)
+ +++++.+..++++.....+...+.+ ........+.+ ...+ ..|++-..+|.|++|.+
T Consensus 219 l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~--------~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 219 LSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF--------DDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp GGGT----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEET
T ss_pred cccCCCcCcEEEEEcccceEEEeCCCCcccceee--------ccccccceEEEEeecccCCc-eEEEEEECCCcEEEEEC
Confidence 1 3444478889999888433333322 11122333444 2244 78888899999999999
Q ss_pred cccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 298 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
..=+. +..+.-. .. .....+....++++|..+.-.+...+.++.+
T Consensus 290 P~Lke----i~~~~l~-~~--------~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 290 PSLKE----IKSVSLP-PP--------LDSRRLSSSSISRNGDIFYWTGPSEIQLFSV 334 (395)
T ss_dssp TT--E----EEEEE-S-S-----------HHHHTT-EE-TTS-EEEE-SSSEEEEEEE
T ss_pred CCchH----hhcccCC-Cc--------cccccccccEECCCCCEEEEeCcccEEEEEE
Confidence 86443 2333321 00 0124566788899999887655455555555
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.18 E-value=0.00021 Score=71.43 Aligned_cols=194 Identities=14% Similarity=0.203 Sum_probs=108.8
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc-ccccCCcceeeeeecCCcc---c---
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT-STSHPEYRYKTEFQSHEPE---F--- 104 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~h~~~---~--- 104 (432)
.+.|.+++||||++.++..+.++++.+-..+- ..+...+- ..+..+....+ +-+ .+.-+.|.|.... .
T Consensus 109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f-~~i~E~~L-~~d~~~~sk~v~VGw---GrkeTqfrgs~gr~~~~~~~ 183 (1265)
T KOG1920|consen 109 DNGISAASWSPDEELLALITGRQTLLFMTKDF-EPIAEKPL-DADDERKSKFVNVGW---GRKETQFRGSEGRQAARQKI 183 (1265)
T ss_pred cCceEEEeecCCCcEEEEEeCCcEEEEEeccc-cchhcccc-ccccccccccceecc---cccceeeecchhhhcccccc
Confidence 45799999999999999888887776654311 10000000 00000000000 000 1111122221110 0
Q ss_pred ---cccchhhhhcceeEEEEEEcCCCCEEEEE-----eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccc
Q 014005 105 ---DYLKSLEIEEKINRVRWCAAPNGSMFILS-----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 176 (432)
Q Consensus 105 ---~~~~~~~~~~~v~~l~~~~s~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 176 (432)
..+...+..+.=.+|+| ..||+++++. ...+.|++||-+ +.+.....-. .+.-.++
T Consensus 184 ~~ek~~~~~~~~~~~~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~-------------~~l~~~L 247 (1265)
T KOG1920|consen 184 EKEKALEQIEQDDHKTSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPV-------------EGLQHSL 247 (1265)
T ss_pred cccccccchhhccCCceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcc-------------cccccce
Confidence 01111112233456999 8999999984 233899999987 5433322211 2445578
Q ss_pred cCCCCCcceecceeec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEE---E-cCCeEEEEeCC
Q 014005 177 HNPPSFAHGYHLEWTE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS---A-DDLRINLWNLE 247 (432)
Q Consensus 177 ~~~~~~~~~~~~~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~---~-~d~~i~lwd~~ 247 (432)
+|-|.|..+++-.... ++.|.++..+.-..+.-.-.+ ......+..++|+.++..|++ . ....|++|-+.
T Consensus 248 sWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~-p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 248 SWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF-PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred eecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC-cccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence 9999998888765533 667888887643222222222 223334899999999999997 4 55669999887
No 314
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.16 E-value=0.0011 Score=56.82 Aligned_cols=214 Identities=13% Similarity=0.151 Sum_probs=112.4
Q ss_pred cceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 114 EKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
..+..|+| +|+ +.++++....+.|...+.. |++.....+... +....+++..++.+++....
T Consensus 22 ~e~SGLTy--~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~------------~D~EgI~y~g~~~~vl~~Er-- 84 (248)
T PF06977_consen 22 DELSGLTY--NPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGF------------GDYEGITYLGNGRYVLSEER-- 84 (248)
T ss_dssp S-EEEEEE--ETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-------------SSEEEEEE-STTEEEEEETT--
T ss_pred CCccccEE--cCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCC------------CCceeEEEECCCEEEEEEcC--
Confidence 67999999 776 4466777778888888875 444333333221 45677788777777776544
Q ss_pred cceEEEEeecccc---cceeeEEee----cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCC--CCceeeEeecCC-C
Q 014005 193 NMATKIANVGNSV---HARCQKVYP----HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI--SDQCFNIVDMKP-S 261 (432)
Q Consensus 193 ~~~v~i~d~~~~~---~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~--~~~~~~~~~~~~-~ 261 (432)
++.+.+.++.... .....+.+. ..+...+-.++|+|.++.|..+ ...-..++.++. ....+....... .
T Consensus 85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~ 164 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD 164 (248)
T ss_dssp TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence 6778777774221 111112221 2344568999999998888888 665556666552 122222211100 0
Q ss_pred CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (432)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 341 (432)
........+.++.++|...++++.+..+..+-.+| .+|+. +..+.-. .. ...+.........++|.++|++
T Consensus 165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~----~~~~~L~-~g---~~gl~~~~~QpEGIa~d~~G~L 235 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRV----VSSLSLD-RG---FHGLSKDIPQPEGIAFDPDGNL 235 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--E----EEEEE-S-TT---GGG-SS---SEEEEEE-TT--E
T ss_pred cccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCE----EEEEEeC-Cc---ccCcccccCCccEEEECCCCCE
Confidence 01223345889999998767888888899999999 55664 2332220 00 0000011246789999999988
Q ss_pred EEEeeCCeEEEE
Q 014005 342 LLSRDYMNLKVF 353 (432)
Q Consensus 342 l~s~~~~~i~iw 353 (432)
.+++.-+..++|
T Consensus 236 YIvsEpNlfy~f 247 (248)
T PF06977_consen 236 YIVSEPNLFYRF 247 (248)
T ss_dssp EEEETTTEEEEE
T ss_pred EEEcCCceEEEe
Confidence 777755666655
No 315
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.13 E-value=0.00045 Score=65.97 Aligned_cols=225 Identities=16% Similarity=0.192 Sum_probs=133.9
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
.-.++.|+|.| +||.|+.. .|.+-|..+-+ .++.+.-|+
T Consensus 17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q---------------------------~iqsie~h~------------ 55 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQ---------------------------LIQSIELHQ------------ 55 (1062)
T ss_pred cccccccCccc-eEEEecCc-eEEEEehhhhh---------------------------hhhccccCc------------
Confidence 35688999988 57777654 78888876654 336788888
Q ss_pred cceeEEEEEEcCC----------CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005 114 EKINRVRWCAAPN----------GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (432)
Q Consensus 114 ~~v~~l~~~~s~~----------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 183 (432)
..|+.+.|.|.|. .-.++++...|+|.+||...+.....
T Consensus 56 s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~------------------------------- 104 (1062)
T KOG1912|consen 56 SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW------------------------------- 104 (1062)
T ss_pred cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh-------------------------------
Confidence 8999999966321 12466667778899998875542111
Q ss_pred ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC---CCCEEE-EE-cCCeEEEEeCCCCCceeeEeec
Q 014005 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFV-SA-DDLRINLWNLEISDQCFNIVDM 258 (432)
Q Consensus 184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~-~~-~d~~i~lwd~~~~~~~~~~~~~ 258 (432)
+ ..+.+.+..++|-+ +.+.++ +- ...++.+|+.. +++.+...
T Consensus 105 -----------------------------l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd-tG~k~Wk~-- 151 (1062)
T KOG1912|consen 105 -----------------------------L-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD-TGEKFWKY-- 151 (1062)
T ss_pred -----------------------------h-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc-CCceeecc--
Confidence 1 33444555666654 343444 44 78899999999 56655433
Q ss_pred CCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceee---cccccccCCc-ccee----------
Q 014005 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL---RDAAESHGSK-SFFT---------- 324 (432)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~h~~~~~~~-~~~~---------- 324 (432)
........++.++|-.++.+..-+..|.+-+-+.-.-.+.....+.| ..|...+..+ ...+
T Consensus 152 -----~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 152 -----DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred -----ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 33445567799999776777777778887777654322222112222 2221100000 0000
Q ss_pred -eeecceeEEEEcCCCCEEEEeeC-CeEEEEec---CcceeEeecceee
Q 014005 325 -EIIASISDIKFANDGQHLLSRDY-MNLKVFRY---EPVMTLSFCGIYV 368 (432)
Q Consensus 325 -~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~~~~~ 368 (432)
...-....++|+|.-+.+.--.. ..+.++|+ .++..+.....+.
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~a 275 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGA 275 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCc
Confidence 00011234678887554443333 78999999 6677776666533
No 316
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.08 E-value=0.00097 Score=62.06 Aligned_cols=182 Identities=8% Similarity=0.034 Sum_probs=96.2
Q ss_pred CEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC--CCcceecceeeccceEEEEeecccc
Q 014005 128 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP--SFAHGYHLEWTENMATKIANVGNSV 205 (432)
Q Consensus 128 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~v~i~d~~~~~ 205 (432)
..++.+..++.+..+|+++++..-......... .........+.-+| .+..++.+.. ++.+..+|..
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g------~~~~~~~~~~~~~p~~~~~~vy~~~~--~g~l~a~d~~--- 259 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG------RTELERLVDVDGDPVVDGGQVYAVSY--QGRVAALDLR--- 259 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCC------CCchhhhhccCCccEEECCEEEEEEc--CCEEEEEECC---
Confidence 367778888999999998887432211110000 00000000011111 1334444444 7888999987
Q ss_pred cceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEE
Q 014005 206 HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (432)
Q Consensus 206 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 284 (432)
+++.+... . . ....... ..+..+..+ .+|.+..+|.. +++.+... . .+.. ....+... .+ ..++
T Consensus 260 tG~~~W~~-~-~-~~~~~p~--~~~~~vyv~~~~G~l~~~d~~-tG~~~W~~--~--~~~~--~~~ssp~i--~g-~~l~ 324 (377)
T TIGR03300 260 SGRVLWKR-D-A-SSYQGPA--VDDNRLYVTDADGVVVALDRR-SGSELWKN--D--ELKY--RQLTAPAV--VG-GYLV 324 (377)
T ss_pred CCcEEEee-c-c-CCccCce--EeCCEEEEECCCCeEEEEECC-CCcEEEcc--c--cccC--CccccCEE--EC-CEEE
Confidence 45544443 1 1 1111222 245567667 89999999998 55544322 0 0011 11122222 24 6788
Q ss_pred EEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecce-eEEEEcCCCCEEEEeeCCeEEEE
Q 014005 285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI-SDIKFANDGQHLLSRDYMNLKVF 353 (432)
Q Consensus 285 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v-~~~~~s~dg~~l~s~~~~~i~iw 353 (432)
+++.+|.+.++|..+|++ +..+..+ ...+ ....+. ++++++.+.+|.|+.|
T Consensus 325 ~~~~~G~l~~~d~~tG~~----~~~~~~~-------------~~~~~~sp~~~-~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 325 VGDFEGYLHWLSREDGSF----VARLKTD-------------GSGIASPPVVV-GDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEeCCCEEEEEECCCCCE----EEEEEcC-------------CCccccCCEEE-CCEEEEEeCCceEEEe
Confidence 899999999999999886 4455442 1122 222333 3455555566888765
No 317
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.07 E-value=2.7e-06 Score=78.78 Aligned_cols=211 Identities=15% Similarity=0.162 Sum_probs=133.9
Q ss_pred CCCcEEEEEEcCCC--CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 31 DVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 31 h~~~V~~~~fsp~g--~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
....+.|++.+-+. .+++.|..+|.|.+-........ -.....+|.
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-------------------------s~E~tp~~a------- 102 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-------------------------SAEVTPGYA------- 102 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-------------------------cceeccccc-------
Confidence 35578888876544 47889999999999887654311 001233444
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEE----eCCCeEEEEEccCcce--eeeeecCCCCccccccccccccccccccCCCCC
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILS----TNDKTIKLWKVRDQKV--KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~----~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (432)
...++++|.+ -|.+.||.| -.|-.+.|||+.++-. +....+... .......++|..+.
T Consensus 103 -----r~Ct~lAwne-LDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~----------~l~gqns~cwlrd~ 166 (783)
T KOG1008|consen 103 -----RPCTSLAWNE-LDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS----------TLDGQNSVCWLRDT 166 (783)
T ss_pred -----cccccccccc-ccHHHHHhhhhhhcccCCccceecccccCCCccccccccc----------cccCccccccccCc
Confidence 7889999953 456677777 3466899999987732 111111110 12445578888888
Q ss_pred cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEEcCCeEEEEe-CCCCCceeeEeecCC
Q 014005 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSADDLRINLWN-LEISDQCFNIVDMKP 260 (432)
Q Consensus 183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~d~~i~lwd-~~~~~~~~~~~~~~~ 260 (432)
+.+.+|.. ...+.++|++.... ++ . .-.+..+..+.+.| .+.++++-.||.|.+|| .+.-+..+.++...+
T Consensus 167 klvlaGm~--sr~~~ifdlRqs~~-~~-~---svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~ 239 (783)
T KOG1008|consen 167 KLVLAGMT--SRSVHIFDLRQSLD-SV-S---SVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNE 239 (783)
T ss_pred chhhcccc--cchhhhhhhhhhhh-hh-h---hhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCC
Confidence 88888887 77899999873211 11 1 11233566678888 67777777999999999 432233333321111
Q ss_pred CCcCCCCcceEEEEEcCCCCcEEEEEeCC-CeEEEEEccc
Q 014005 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDMRQ 299 (432)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~iwd~~~ 299 (432)
......+..++|.|....++++...| ++|+++|+..
T Consensus 240 ---N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 240 ---NKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ---CCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 11223589999999875677776654 6899999873
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.06 E-value=1.4e-05 Score=73.87 Aligned_cols=81 Identities=19% Similarity=0.345 Sum_probs=65.9
Q ss_pred CCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (432)
Q Consensus 25 ~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~ 104 (432)
....+..+..|.|++++|+.+.|+.|+.||+|.+||...+. +.+....
T Consensus 252 svtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~-----------------------------t~~~ka~--- 299 (545)
T PF11768_consen 252 SVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV-----------------------------TLLAKAE--- 299 (545)
T ss_pred EEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe-----------------------------eeeeeec---
Confidence 44556778899999999999999999999999999987653 2222222
Q ss_pred cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc
Q 014005 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK 148 (432)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~ 148 (432)
-..+.++| +|+|..+++|+..|.+.+||+.-..
T Consensus 300 ---------~~P~~iaW--Hp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 300 ---------FIPTLIAW--HPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ---------ccceEEEE--cCCCcEEEEEcCCceEEEEEeecCc
Confidence 45678999 8999999999999999999987544
No 319
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.0001 Score=65.62 Aligned_cols=213 Identities=10% Similarity=-0.017 Sum_probs=130.0
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
+.|+.+.- ...+++++++.||+++.|.-..-. .+.+..+..|. +.+..++.+.++....+... +
T Consensus 10 d~i~hv~~---tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL-----------~~I~sl~~S~dg~L~~Sv~d-~ 74 (558)
T KOG0882|consen 10 DVITHVFP---TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHL-----------GVILSLAVSYDGWLFRSVED-P 74 (558)
T ss_pred ceeeeEee---ehhheEEeeecchhhhhcCCCCccceeehhhhHHHH-----------HHHHhhhccccceeEeeccC-c
Confidence 56666554 456799999999999999865422 22332233333 66777777777776666432 3
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC--CEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
|..++++|+.+.-....++. ....+.+. ...++.. ..++++ +++.+.++|-.........+ ..-|.+
T Consensus 75 Dhs~KvfDvEn~DminmiKL--~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f------kklH~s 145 (558)
T KOG0882|consen 75 DHSVKVFDVENFDMINMIKL--VDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF------KKLHFS 145 (558)
T ss_pred ccceeEEEeeccchhhhccc--ccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee------cccccC
Confidence 78899999874311112221 11222222 2222321 134444 79999999988333222222 267889
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccc-cccccccceeecc-cccccCCccceeeeecceeEEEEcCCCCEEEE-e
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLS-R 345 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~ 345 (432)
+|..+.++|-+ ..+++....|.|.-|.... -+.... ...+.- |... .-.+........++.|+|+|..+++ +
T Consensus 146 PV~~i~y~qa~-Ds~vSiD~~gmVEyWs~e~~~qfPr~-~l~~~~K~eTd---Ly~f~K~Kt~pts~Efsp~g~qistl~ 220 (558)
T KOG0882|consen 146 PVKKIRYNQAG-DSAVSIDISGMVEYWSAEGPFQFPRT-NLNFELKHETD---LYGFPKAKTEPTSFEFSPDGAQISTLN 220 (558)
T ss_pred ceEEEEeeccc-cceeeccccceeEeecCCCcccCccc-cccccccccch---hhcccccccCccceEEccccCcccccC
Confidence 99999999998 8888888999999999772 111000 000000 0000 0011223567889999999999998 5
Q ss_pred eCCeEEEEec
Q 014005 346 DYMNLKVFRY 355 (432)
Q Consensus 346 ~~~~i~iwd~ 355 (432)
.|..|++++.
T Consensus 221 ~DrkVR~F~~ 230 (558)
T KOG0882|consen 221 PDRKVRGFVF 230 (558)
T ss_pred cccEEEEEEe
Confidence 6699999998
No 320
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.95 E-value=0.0011 Score=62.08 Aligned_cols=100 Identities=16% Similarity=0.234 Sum_probs=57.6
Q ss_pred eeEEEeCCCCCEEEEE-cCCeEEEE-eCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005 221 INSISNNSDCETFVSA-DDLRINLW-NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (432)
Q Consensus 221 i~~~~~~~~~~~l~~~-~d~~i~lw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 298 (432)
-..++|.+.++ +|+- .+++|.++ +.+ ....+.+ ... ..+..+-. | .+|+..+.+ .|.+||..
T Consensus 71 g~~~vw~~~n~-yAv~~~~~~I~I~kn~~--~~~~k~i-----~~~---~~~~~If~---G-~LL~~~~~~-~i~~yDw~ 134 (443)
T PF04053_consen 71 GLSFVWSSRNR-YAVLESSSTIKIYKNFK--NEVVKSI-----KLP---FSVEKIFG---G-NLLGVKSSD-FICFYDWE 134 (443)
T ss_dssp -SEEEE-TSSE-EEEE-TTS-EEEEETTE--E-TT----------S---S-EEEEE----S-SSEEEEETT-EEEEE-TT
T ss_pred eeEEEEecCcc-EEEEECCCeEEEEEcCc--cccceEE-----cCC---cccceEEc---C-cEEEEECCC-CEEEEEhh
Confidence 34678888554 6666 78889986 333 2221221 011 12333322 6 777777655 89999999
Q ss_pred ccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 299 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
+++. ++.+.. .+|..+.|+++|.++|..++..+.|++.
T Consensus 135 ~~~~----i~~i~v---------------~~vk~V~Ws~~g~~val~t~~~i~il~~ 172 (443)
T PF04053_consen 135 TGKL----IRRIDV---------------SAVKYVIWSDDGELVALVTKDSIYILKY 172 (443)
T ss_dssp T--E----EEEESS----------------E-EEEEE-TTSSEEEEE-S-SEEEEEE
T ss_pred Hcce----eeEEec---------------CCCcEEEEECCCCEEEEEeCCeEEEEEe
Confidence 9876 577765 3589999999999999987788888887
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.00033 Score=67.12 Aligned_cols=187 Identities=14% Similarity=0.092 Sum_probs=121.4
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
..++++++ .++.|+.|+.+|.|++.+..... .....+. . -...|.++++++. |
T Consensus 40 D~is~~av----~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s--------------~------~~~~Gey~asCS~--D 92 (846)
T KOG2066|consen 40 DAISCCAV----HDKFFALGTHRGAVYLTTCQGNP-KTNFDHS--------------S------SILEGEYVASCSD--D 92 (846)
T ss_pred hHHHHHHh----hcceeeeccccceEEEEecCCcc-ccccccc--------------c------cccCCceEEEecC--C
Confidence 56777777 36789999999999999976543 2211110 0 1567889999998 9
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-----CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-----CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
|.+.|..+. +.+....+ .-..++.+++++|+ .+.+++| ..| +.++..+.-+....+ ......
T Consensus 93 Gkv~I~sl~---~~~~~~~~--df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v------~l~~~e 160 (846)
T KOG2066|consen 93 GKVVIGSLF---TDDEITQY--DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV------VLSEGE 160 (846)
T ss_pred CcEEEeecc---CCccceeE--ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce------eeecCc
Confidence 999988877 33333332 23458999999998 5567777 666 888766533322221 125566
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~ 347 (432)
++|.++.|. | +++|-++.+| |++||+.+++. +..++- + ....+. ......+.|.++.++++ |-.
T Consensus 161 G~I~~i~W~--g-~lIAWand~G-v~vyd~~~~~~----l~~i~~-p-~~~~R~-----e~fpphl~W~~~~~LVI-GW~ 224 (846)
T KOG2066|consen 161 GPIHSIKWR--G-NLIAWANDDG-VKVYDTPTRQR----LTNIPP-P-SQSVRP-----ELFPPHLHWQDEDRLVI-GWG 224 (846)
T ss_pred cceEEEEec--C-cEEEEecCCC-cEEEeccccce----eeccCC-C-CCCCCc-----ccCCCceEecCCCeEEE-ecC
Confidence 889999997 5 7888888776 89999998765 233322 1 111110 22345688988776555 422
Q ss_pred CeEEEEec
Q 014005 348 MNLKVFRY 355 (432)
Q Consensus 348 ~~i~iwd~ 355 (432)
.+|+|..+
T Consensus 225 d~v~i~~I 232 (846)
T KOG2066|consen 225 DSVKICSI 232 (846)
T ss_pred CeEEEEEE
Confidence 47777777
No 322
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.89 E-value=0.003 Score=58.05 Aligned_cols=259 Identities=12% Similarity=0.133 Sum_probs=118.9
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
...+....|||+|+.+|... ++.|.+++..++... .+...+.. ..+.|-. |++..-+
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~--------~lT~dg~~-----------~i~nG~~---dwvyeEE 98 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET--------QLTTDGEP-----------GIYNGVP---DWVYEEE 98 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE--------ESES--TT-----------TEEESB-----HHHHHH
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE--------Eeccccce-----------eEEcCcc---ceecccc
Confidence 35688899999999999875 578999987665422 00000000 0011111 2221111
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeC-CCeEEEEEc---cCc-----ceeeeee-cCC--CCccc------------ccc--
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKV---RDQ-----KVKKIKE-MDH--FPFVS------------SEN-- 165 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~---~~~-----~~~~~~~-~~~--~~~~~------------~~~-- 165 (432)
+-+.-..+.| +||+++|+.... +..|+.+.+ ... +...+.- ..+ ++.+. .+.
T Consensus 99 v~~~~~~~~W--Spd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~ 176 (353)
T PF00930_consen 99 VFDRRSAVWW--SPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPP 176 (353)
T ss_dssp TSSSSBSEEE---TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---
T ss_pred ccccccceEE--CCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeec
Confidence 1123456788 888888887743 333433332 111 1111100 000 00000 000
Q ss_pred --ccccccccccccCCCCCcceecceeec---cceEEEEeecccccceeeEEeecCCCCCe---eEEEeC-CCCCEEE-E
Q 014005 166 --TLLAEKNFMNEHNPPSFAHGYHLEWTE---NMATKIANVGNSVHARCQKVYPHAHDFNI---NSISNN-SDCETFV-S 235 (432)
Q Consensus 166 --~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~v~i~d~~~~~~~~~~~~~~~~~~~~i---~~~~~~-~~~~~l~-~ 235 (432)
.......+..+.|.+++..++.....- ...+.+.|... +.+...........| ....+. +++..++ .
T Consensus 177 ~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t---g~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~ 253 (353)
T PF00930_consen 177 NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST---GETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWI 253 (353)
T ss_dssp HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT---TTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEE
T ss_pred cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC---CceeEEEEecCCcceeeecccccccCCCCEEEEE
Confidence 011234445566666666333332211 11445555543 222222212233333 245554 6655555 4
Q ss_pred E-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceE-EEEEcCCCCcEEEEEeCCC----eEEEEEcc-ccccccccce
Q 014005 236 A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSSSRG----FVRLVDMR-QSALCDHSAR 308 (432)
Q Consensus 236 ~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~~~~~dg----~i~iwd~~-~~~~~~~~~~ 308 (432)
. .+|.-+|+-++..+...+.+ ....-.|+ -+.+++++..+.++|..++ .+..-++. .+. .+
T Consensus 254 s~~~G~~hly~~~~~~~~~~~l-------T~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-----~~ 321 (353)
T PF00930_consen 254 SERDGYRHLYLYDLDGGKPRQL-------TSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-----PK 321 (353)
T ss_dssp EETTSSEEEEEEETTSSEEEES-------S-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE-----EE
T ss_pred EEcCCCcEEEEEcccccceecc-------ccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-----eE
Confidence 4 77765555554334443333 33344464 4678888745556666533 45555555 333 35
Q ss_pred eecccccccCCccceeeeecce-eEEEEcCCCCEEEE
Q 014005 309 ILRDAAESHGSKSFFTEIIASI-SDIKFANDGQHLLS 344 (432)
Q Consensus 309 ~~~~h~~~~~~~~~~~~~~~~v-~~~~~s~dg~~l~s 344 (432)
.+... ... ..+.|||+|++++-
T Consensus 322 ~LT~~--------------~~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 322 CLTCE--------------DGDHYSASFSPDGKYYVD 344 (353)
T ss_dssp ESSTT--------------SSTTEEEEE-TTSSEEEE
T ss_pred eccCC--------------CCCceEEEECCCCCEEEE
Confidence 55542 233 58999999999875
No 323
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.89 E-value=0.0054 Score=52.87 Aligned_cols=186 Identities=11% Similarity=-0.004 Sum_probs=99.5
Q ss_pred CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccc
Q 014005 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV 205 (432)
Q Consensus 126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~ 205 (432)
++..+++++.++.+..||..+++..-...... .+.... ...+..++.... ++.+..+|..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~--------------~~~~~~-~~~~~~v~v~~~--~~~l~~~d~~--- 94 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPG--------------PISGAP-VVDGGRVYVGTS--DGSLYALDAK--- 94 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSS--------------CGGSGE-EEETTEEEEEET--TSEEEEEETT---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccc--------------ccccee-eecccccccccc--eeeeEecccC---
Confidence 46678888899999999999988554433321 111111 122223333333 6688888877
Q ss_pred cceeeEEeecCC--C-CCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC---CcceEEEEEcCC
Q 014005 206 HARCQKVYPHAH--D-FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL---TEVITSAEFHPI 278 (432)
Q Consensus 206 ~~~~~~~~~~~~--~-~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~p~ 278 (432)
+++.+....... . ..........++..++.+ .++.+..+|.+ +++.+............+ ...+..-....+
T Consensus 95 tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (238)
T PF13360_consen 95 TGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPK-TGKLLWKYPVGEPRGSSPISSFSDINGSPVISD 173 (238)
T ss_dssp TSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETT-TTEEEEEEESSTT-SS--EEEETTEEEEEECCT
T ss_pred CcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecC-CCcEEEEeecCCCCCCcceeeecccccceEEEC
Confidence 555555521111 1 111122222236777777 79999999999 677665553311110110 011222223334
Q ss_pred CCcEEEEEeCCCe-EEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005 279 YCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 279 ~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~ 355 (432)
+ .+..++.++. +.+ |+.+++. + ++.. ...+... ...++..|+.++ ++.+..||+
T Consensus 174 ~--~v~~~~~~g~~~~~-d~~tg~~----~--w~~~-------------~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 174 G--RVYVSSGDGRVVAV-DLATGEK----L--WSKP-------------ISGIYSL-PSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp T--EEEEECCTSSEEEE-ETTTTEE----E--EEEC-------------SS-ECEC-EECCCTEEEEEETTTEEEEEET
T ss_pred C--EEEEEcCCCeEEEE-ECCCCCE----E--EEec-------------CCCccCC-ceeeCCEEEEEeCCCEEEEEEC
Confidence 3 4555666665 555 9998874 1 2220 0122221 345666777654 599999998
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0029 Score=61.37 Aligned_cols=196 Identities=11% Similarity=0.102 Sum_probs=120.7
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCC-CCCcceecceeecc--c-eEEEE
Q 014005 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP-PSFAHGYHLEWTEN--M-ATKIA 199 (432)
Q Consensus 124 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~--~-~v~i~ 199 (432)
++.+..++.|+.+|.|.+.+-.- +....++..+ ..+...-+. .+..++++.+.... - .+++|
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s~---~~~~~fqa~~-----------~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw 97 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSSF---QLIRGFQAYE-----------QSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIW 97 (933)
T ss_pred cCCCceEEEeeccccEEEecccc---eeeehheecc-----------hhhhhHhhcccCceEEEEEeecCCCCceEEEEe
Confidence 67888999999999988876432 2223333333 232233333 33345555444221 1 69999
Q ss_pred eecccc---cceee---EEee---cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC-ceeeEeecCCCCcCCCCc
Q 014005 200 NVGNSV---HARCQ---KVYP---HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 200 d~~~~~---~~~~~---~~~~---~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~ 268 (432)
+++... ...|. +.++ .....++.+++++.+-..+|+| .||.|.++.-+... +..+.- -...-..
T Consensus 98 ~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~-----~~~~~~~ 172 (933)
T KOG2114|consen 98 DLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD-----YSHRGKE 172 (933)
T ss_pred cccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee-----eeccCCC
Confidence 987531 13455 3331 1235678899999999999999 99999988543111 111110 1134457
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCC
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM 348 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~ 348 (432)
+|+.+.+..++...+.++. ...|.+|.+.... +. .+.+..| ..++.+.+|++....++++...
T Consensus 173 pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~-p~--~~~ld~~-------------G~~lnCss~~~~t~qfIca~~e 235 (933)
T KOG2114|consen 173 PITGLALRSDGKSVLFVAT-TEQVMLYSLSGRT-PS--LKVLDNN-------------GISLNCSSFSDGTYQFICAGSE 235 (933)
T ss_pred CceeeEEecCCceeEEEEe-cceeEEEEecCCC-cc--eeeeccC-------------CccceeeecCCCCccEEEecCc
Confidence 8999999988833233333 4579999988433 21 3445554 6788888888765546666558
Q ss_pred eEEEEec
Q 014005 349 NLKVFRY 355 (432)
Q Consensus 349 ~i~iwd~ 355 (432)
.+.+||.
T Consensus 236 ~l~fY~s 242 (933)
T KOG2114|consen 236 FLYFYDS 242 (933)
T ss_pred eEEEEcC
Confidence 9999999
No 325
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.85 E-value=0.00036 Score=67.76 Aligned_cols=152 Identities=11% Similarity=0.078 Sum_probs=101.6
Q ss_pred ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec--
Q 014005 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE-- 192 (432)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-- 192 (432)
.|.-|+. +++.+++|...|+|.+-|..+-+ .+..+..|. +.+ .+|+-.++.+++++.+.
T Consensus 179 ~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~--~iht~~aHs-----------~si--SDfDv~GNlLitCG~S~R~ 239 (1118)
T KOG1275|consen 179 GVTIMRY----NNRNLFCGDTRGTVFLRDPNSFE--TIHTFDAHS-----------GSI--SDFDVQGNLLITCGYSMRR 239 (1118)
T ss_pred ceEEEEe----cCcEEEeecccceEEeecCCcCc--eeeeeeccc-----------cce--eeeeccCCeEEEeeccccc
Confidence 3555554 67899999999999999998766 333444444 444 34556677777776532
Q ss_pred -----cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEe---CCCCCceeeEeecCCCC
Q 014005 193 -----NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWN---LEISDQCFNIVDMKPSN 262 (432)
Q Consensus 193 -----~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd---~~~~~~~~~~~~~~~~~ 262 (432)
|..|++||++....-.++... ....-+.|.|. ...+++. ..|...+-| +.........+
T Consensus 240 ~~l~~D~FvkVYDLRmmral~PI~~~-----~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v------ 308 (1118)
T KOG1275|consen 240 YNLAMDPFVKVYDLRMMRALSPIQFP-----YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV------ 308 (1118)
T ss_pred ccccccchhhhhhhhhhhccCCcccc-----cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEE------
Confidence 678999999965444444332 12244667775 3345555 889988888 33221122222
Q ss_pred cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (432)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 298 (432)
....+.+..+++++++ +.+|.|..+|.|.+|.-+
T Consensus 309 -~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 309 -NPNGSGISAFDISSNG-DALAFGDHEGHVNLWADR 342 (1118)
T ss_pred -ccCCCcceeEEecCCC-ceEEEecccCcEeeecCC
Confidence 3445569999999999 999999999999999833
No 326
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.84 E-value=0.0013 Score=61.23 Aligned_cols=185 Identities=13% Similarity=0.077 Sum_probs=110.5
Q ss_pred cceeEEEEEEcCCCCEEEEE---eCC-CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 114 EKINRVRWCAAPNGSMFILS---TND-KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~---~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
..+..-+| +++++.++.. ... ..+.++++.+++...+.... +.-...+|+|+++.++-..
T Consensus 193 ~~~~~p~w--s~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~--------------g~~~~P~fspDG~~l~f~~ 256 (425)
T COG0823 193 SLILTPAW--SPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN--------------GNNGAPAFSPDGSKLAFSS 256 (425)
T ss_pred cceecccc--CcCCCceEEEEEecCCCceEEEEeccCCccceeeccC--------------CccCCccCCCCCCEEEEEE
Confidence 45566778 7788776554 223 46999999988866665544 3445678999998887765
Q ss_pred eec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 190 WTE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 190 ~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
... .-.+.+.|+... . ...+ ....+.-..-.|+|+|+.++.. ..|.-.+|-++..+.....+ ...
T Consensus 257 ~rdg~~~iy~~dl~~~---~-~~~L-t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri-------T~~ 324 (425)
T COG0823 257 SRDGSPDIYLMDLDGK---N-LPRL-TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL-------TFS 324 (425)
T ss_pred CCCCCccEEEEcCCCC---c-ceec-ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe-------ecc
Confidence 432 225666666632 2 2223 2223333366799999999866 55654444443223332322 122
Q ss_pred CcceEEEEEcCCCCcEEEEEeC-CCe--EEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005 267 TEVITSAEFHPIYCNLLAYSSS-RGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 343 (432)
...-..-.|+||| .+++..+. +|. |.+.|+.++.. .+.+.. ........|.++|+.+.
T Consensus 325 ~~~~~~p~~SpdG-~~i~~~~~~~g~~~i~~~~~~~~~~----~~~lt~--------------~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 325 GGGNSNPVWSPDG-DKIVFESSSGGQWDIDKNDLASGGK----IRILTS--------------TYLNESPSWAPNGRMIM 385 (425)
T ss_pred CCCCcCccCCCCC-CEEEEEeccCCceeeEEeccCCCCc----EEEccc--------------cccCCCCCcCCCCceEE
Confidence 2222277899999 66665553 454 66666665552 345544 34455678888888877
Q ss_pred Ee
Q 014005 344 SR 345 (432)
Q Consensus 344 s~ 345 (432)
..
T Consensus 386 ~~ 387 (425)
T COG0823 386 FS 387 (425)
T ss_pred Ee
Confidence 63
No 327
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.81 E-value=1.3e-05 Score=74.33 Aligned_cols=208 Identities=11% Similarity=0.111 Sum_probs=125.4
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC-Ccceeccee--
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS-FAHGYHLEW-- 190 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~-- 190 (432)
..+.|+++.-..+...++.|..+|.|.+-.++...-........+ ....++++|++- ...++.|..
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~-----------ar~Ct~lAwneLDtn~LAagldkh 125 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGY-----------ARPCTSLAWNELDTNHLAAGLDKH 125 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccc-----------cccccccccccccHHHHHhhhhhh
Confidence 456666663233445688889999999988765432111111122 256778888775 445555532
Q ss_pred eccceEEEEeecccccceeeE--EeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 191 TENMATKIANVGNSVHARCQK--VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
-.+..+.|||+....+ .+.. .|..+.....++++|..+.+.+.+| ....+.++|++....... .-.+
T Consensus 126 rnds~~~Iwdi~s~lt-vPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~---------svnT 195 (783)
T KOG1008|consen 126 RNDSSLKIWDINSLLT-VPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS---------SVNT 195 (783)
T ss_pred cccCCccceecccccC-CCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh---------hhhh
Confidence 1266899999985422 1211 1212244566789999889999999 888999999993322222 1223
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEE-ccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC-EEEE-
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVD-MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLS- 344 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~s- 344 (432)
..+..+..+|-..+++++.. ||.|.+|| .+.-+. ++..+.. ...+. ...+..++|.|... .+++
T Consensus 196 k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnien---pl~~i~~-~~N~~--------~~~l~~~aycPtrtglla~l 262 (783)
T KOG1008|consen 196 KYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIEN---PLQIILR-NENKK--------PKQLFALAYCPTRTGLLAVL 262 (783)
T ss_pred hhcccceecCCCCCceeccc-cCceeeccchhhhcc---HHHHHhh-CCCCc--------ccceeeEEeccCCcchhhhh
Confidence 34667788884437777555 99999999 443221 1232222 11111 13588999999643 3333
Q ss_pred eeC-CeEEEEec
Q 014005 345 RDY-MNLKVFRY 355 (432)
Q Consensus 345 ~~~-~~i~iwd~ 355 (432)
..+ ++|+++|+
T Consensus 263 ~RdS~tIrlydi 274 (783)
T KOG1008|consen 263 SRDSITIRLYDI 274 (783)
T ss_pred ccCcceEEEecc
Confidence 444 99999999
No 328
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.78 E-value=0.007 Score=52.18 Aligned_cols=188 Identities=16% Similarity=0.067 Sum_probs=104.0
Q ss_pred CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEE
Q 014005 43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122 (432)
Q Consensus 43 ~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~ 122 (432)
++.++++++.++.+..||..+++.. ..+.... .+....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~---------------------------W~~~~~~-------------~~~~~~-- 72 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVL---------------------------WRFDLPG-------------PISGAP-- 72 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEE---------------------------EEEECSS-------------CGGSGE--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE---------------------------EEeeccc-------------ccccee--
Confidence 4666777788999999999888643 2232211 111111
Q ss_pred EcCCCCEEEEEeCCCeEEEEEccCcceeee-eecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEee
Q 014005 123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANV 201 (432)
Q Consensus 123 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~ 201 (432)
..++..++.++.++.+..+|..+++.... ....... ............+..++.+.. ++.+..+|+
T Consensus 73 -~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~--~g~l~~~d~ 139 (238)
T PF13360_consen 73 -VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP----------AGVRSSSSPAVDGDRLYVGTS--SGKLVALDP 139 (238)
T ss_dssp -EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT----------CSTB--SEEEEETTEEEEEET--CSEEEEEET
T ss_pred -eecccccccccceeeeEecccCCcceeeeeccccccc----------cccccccCceEecCEEEEEec--cCcEEEEec
Confidence 12355677777888999999998885443 1211111 000111112222455555554 788889998
Q ss_pred cccccceeeEEeecCCCCC----------eeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005 202 GNSVHARCQKVYPHAHDFN----------INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (432)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (432)
+ +++.+..+. ..... +..-....++ .+..+ .++.+..+|+. +++.+... . ...+
T Consensus 140 ~---tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~-tg~~~w~~-------~--~~~~ 204 (238)
T PF13360_consen 140 K---TGKLLWKYP-VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLA-TGEKLWSK-------P--ISGI 204 (238)
T ss_dssp T---TTEEEEEEE-SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETT-TTEEEEEE-------C--SS-E
T ss_pred C---CCcEEEEee-cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECC-CCCEEEEe-------c--CCCc
Confidence 8 667666652 22211 1222233345 44444 66654444998 55433221 1 1112
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
... ..+++ ..|+.++.++.+..||+++|+.
T Consensus 205 ~~~-~~~~~-~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 205 YSL-PSVDG-GTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp CEC-EECCC-TEEEEEETTTEEEEEETTTTEE
T ss_pred cCC-ceeeC-CEEEEEeCCCEEEEEECCCCCE
Confidence 221 34555 6777777999999999999875
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.76 E-value=0.0044 Score=59.26 Aligned_cols=113 Identities=9% Similarity=0.033 Sum_probs=70.8
Q ss_pred CCCCcceecceeeccceEEEEeeccc--ccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceee
Q 014005 179 PPSFAHGYHLEWTENMATKIANVGNS--VHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN 254 (432)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~i~d~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~ 254 (432)
.+++++... .++.|.+.|.... .....+..+ .-......+.++|||++++++ .+.++.+.|++.....+.
T Consensus 285 vkdGK~~~V----~gn~V~VID~~t~~~~~~~v~~yI--PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 285 VKAGKFKTI----GGSKVPVVDGRKAANAGSALTRYV--PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred hhCCCEEEE----CCCEEEEEECCccccCCcceEEEE--ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 345554443 2567889888730 002333333 344577889999999998876 699999999984332110
Q ss_pred EeecCCCC----cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccc
Q 014005 255 IVDMKPSN----MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (432)
Q Consensus 255 ~~~~~~~~----~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 299 (432)
- .+++.. -..-.......+|+++| +...+--.|..|..||+.+
T Consensus 359 ~-~~~~~~~vvaevevGlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 359 G-KIKPRDAVVAEPELGLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred c-cCCccceEEEeeccCCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 0 000000 00112234567899998 8888888999999999886
No 330
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.67 E-value=0.0019 Score=63.96 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=91.8
Q ss_pred cceEEEEeecccccceeeEEeecCCC-CCeeEEEeCC-----CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHD-FNINSISNNS-----DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~-----~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
...+.-.|++ .++.+..+ ..+. ..|..++-.. +......| +++.+..||.|..+..+..- .... -.
T Consensus 503 ~~~ly~mDLe---~GKVV~eW-~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~--~~k~-Y~ 575 (794)
T PF08553_consen 503 PNKLYKMDLE---RGKVVEEW-KVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS--QSKQ-YS 575 (794)
T ss_pred CCceEEEecC---CCcEEEEe-ecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec--cccc-cc
Confidence 4567777777 78888888 3443 3355554321 13345667 99999999999655322110 0001 12
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~ 345 (432)
.....+|++-+.+| +||+|+.+|.||+|| +.|+.. ...+.+ ...+|.++..+.||+||++-
T Consensus 576 ~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd-~~g~~A---KT~lp~-------------lG~pI~~iDvt~DGkwilaT 636 (794)
T PF08553_consen 576 SKNNFSCFATTEDG--YIAVGSNKGDIRLYD-RLGKRA---KTALPG-------------LGDPIIGIDVTADGKWILAT 636 (794)
T ss_pred cCCCceEEEecCCc--eEEEEeCCCcEEeec-ccchhh---hhcCCC-------------CCCCeeEEEecCCCcEEEEe
Confidence 34457888888887 789999999999999 444432 222322 35799999999999999876
Q ss_pred eCCeEEEEec
Q 014005 346 DYMNLKVFRY 355 (432)
Q Consensus 346 ~~~~i~iwd~ 355 (432)
.+..+.+++.
T Consensus 637 c~tyLlLi~t 646 (794)
T PF08553_consen 637 CKTYLLLIDT 646 (794)
T ss_pred ecceEEEEEE
Confidence 6678888887
No 331
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.59 E-value=0.067 Score=50.14 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=28.3
Q ss_pred cceeEEEEcCCCCEEEEeeC-CeEEEEec---CcceeEeec
Q 014005 328 ASISDIKFANDGQHLLSRDY-MNLKVFRY---EPVMTLSFC 364 (432)
Q Consensus 328 ~~v~~~~~s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~ 364 (432)
+++..++.||+|++||.-.+ |.+.+.+. +.+..+...
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence 68999999999999998655 89888877 444444443
No 332
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.00066 Score=64.19 Aligned_cols=120 Identities=11% Similarity=0.145 Sum_probs=87.1
Q ss_pred CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 014005 217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (432)
Q Consensus 217 ~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iw 295 (432)
+...+.--+++..+++++.| +-|.+++|+.. .+..... +..+..+.+.....|++. .++|.|+..|.|.++
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~-~~~~~~~------~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRH-TGEMRKL------KNEGATGITCVRSVSSVE-YLVAAGTASGRVSVF 103 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecC-chhhhcc------cccCccceEEEEEecchh-HhhhhhcCCceEEee
Confidence 44455556677889999999 99999999988 4433221 123445567778889988 999999999999999
Q ss_pred EccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 296 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
-+..+..... ...-..| . .|...|++++|++|++.+.+|++ |+|..-.+
T Consensus 104 ql~~~~p~~~-~~~t~~d---~-------~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 104 QLNKELPRDL-DYVTPCD---K-------SHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL 153 (726)
T ss_pred hhhccCCCcc-eeecccc---c-------cCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence 9887443211 1111111 0 13689999999999999999988 99988877
No 333
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00033 Score=61.71 Aligned_cols=82 Identities=17% Similarity=0.109 Sum_probs=65.8
Q ss_pred eEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe
Q 014005 210 QKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS 287 (432)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 287 (432)
...+ ..+...|..++|+|..+ .+..+ -+..|++.|++ +......+ ..+ ..+++++|+-+..+++.+|.
T Consensus 186 sq~l-p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dle-t~~~vssy-------~a~-~~~wSC~wDlde~h~IYaGl 255 (463)
T KOG1645|consen 186 SQIL-PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLE-TSCVVSSY-------IAY-NQIWSCCWDLDERHVIYAGL 255 (463)
T ss_pred hhcc-cccchhhhhhccCccccceeeeeccCceEEEEecc-cceeeehe-------ecc-CCceeeeeccCCcceeEEec
Confidence 3444 67888999999999887 45566 89999999999 55555544 444 77999999998877888888
Q ss_pred CCCeEEEEEccccc
Q 014005 288 SRGFVRLVDMRQSA 301 (432)
Q Consensus 288 ~dg~i~iwd~~~~~ 301 (432)
.+|.|.+||+|..+
T Consensus 256 ~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 256 QNGMVLVYDMRQPE 269 (463)
T ss_pred cCceEEEEEccCCC
Confidence 99999999999644
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.49 E-value=0.032 Score=52.43 Aligned_cols=216 Identities=12% Similarity=0.146 Sum_probs=106.2
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
....++++|+|++++.+ .||.-.|+...... ... .
T Consensus 34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r---------------------------~k~-----~------------ 68 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWR---------------------------NKA-----F------------ 68 (443)
T ss_dssp --SEEEE-TTSSEEEEE-ETTEEEEEETTTTE---------------------------EEE-----E------------
T ss_pred CCeeEEECCCCCEEEEE-cCCEEEEEEccCCc---------------------------ccc-----c------------
Confidence 46789999999998884 56788888732211 001 1
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcce-eeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
+.-....| .+.+ .+|+-...++|.++.--.... +.+ ... ..+..+.. |..+...+
T Consensus 69 G~g~~~vw--~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i-~~~--------------~~~~~If~---G~LL~~~~--- 124 (443)
T PF04053_consen 69 GSGLSFVW--SSRN-RYAVLESSSTIKIYKNFKNEVVKSI-KLP--------------FSVEKIFG---GNLLGVKS--- 124 (443)
T ss_dssp EE-SEEEE---TSS-EEEEE-TTS-EEEEETTEE-TT------S--------------S-EEEEE----SSSEEEEE---
T ss_pred CceeEEEE--ecCc-cEEEEECCCeEEEEEcCccccceEE-cCC--------------cccceEEc---CcEEEEEC---
Confidence 44456788 5644 577777788899974322221 111 111 01111111 44444433
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCC--------C--ceeeEeecCCCC
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEIS--------D--QCFNIVDMKPSN 262 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~--------~--~~~~~~~~~~~~ 262 (432)
++.+.+||.. +++.++.+ . -..|..+.|++++.+++...+..+.+++.+.. + ..+..+
T Consensus 125 ~~~i~~yDw~---~~~~i~~i-~--v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~------ 192 (443)
T PF04053_consen 125 SDFICFYDWE---TGKLIRRI-D--VSAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELI------ 192 (443)
T ss_dssp TTEEEEE-TT---T--EEEEE-S--S-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEE------
T ss_pred CCCEEEEEhh---HcceeeEE-e--cCCCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEE------
Confidence 5579999999 77788876 2 22488999999999999886778888887621 0 023322
Q ss_pred cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (432)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 342 (432)
......|.+.+|.-+ .|+..+.. .++- +..|.. .++.. ...++.=+...+....+
T Consensus 193 -~E~~~~IkSg~W~~d---~fiYtT~~-~lkY--l~~Ge~-----~~i~~-------------ld~~~yllgy~~~~~~l 247 (443)
T PF04053_consen 193 -HEISERIKSGCWVED---CFIYTTSN-HLKY--LVNGET-----GIIAH-------------LDKPLYLLGYLPKENRL 247 (443)
T ss_dssp -EEE-S--SEEEEETT---EEEEE-TT-EEEE--EETTEE-----EEEEE--------------SS--EEEEEETTTTEE
T ss_pred -EEecceeEEEEEEcC---EEEEEcCC-eEEE--EEcCCc-----ceEEE-------------cCCceEEEEEEccCCEE
Confidence 222456778888744 45545444 5655 444432 22221 02345556666654455
Q ss_pred EEeeC-CeEEEEec
Q 014005 343 LSRDY-MNLKVFRY 355 (432)
Q Consensus 343 ~s~~~-~~i~iwd~ 355 (432)
...+. +.+..+.+
T Consensus 248 y~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 248 YLIDRDGNVISYEL 261 (443)
T ss_dssp EEE-TT--EEEEE-
T ss_pred EEEECCCCEEEEEE
Confidence 55433 66666666
No 335
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.48 E-value=0.077 Score=49.70 Aligned_cols=60 Identities=10% Similarity=-0.041 Sum_probs=37.6
Q ss_pred CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 230 ~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
+..+..+ .++.+..+|.. +++.+...+ .. ....+.. .+ ..++.++.+|.+..+|..+|+.
T Consensus 256 ~~~vy~~~~~g~l~ald~~-tG~~~W~~~-----~~----~~~~~~~--~~-~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLR-SGQIVWKRE-----YG----SVNDFAV--DG-GRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred CCEEEEEEcCCeEEEEECC-CCCEEEeec-----CC----CccCcEE--EC-CEEEEEcCCCeEEEEECCCCcE
Confidence 3345555 88999999998 555443221 01 1111222 34 5677788899999999998875
No 336
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00077 Score=62.98 Aligned_cols=75 Identities=23% Similarity=0.218 Sum_probs=62.5
Q ss_pred CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceE-EEEEcCCCCcEEEEEeCCCeEEEE
Q 014005 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSSSRGFVRLV 295 (432)
Q Consensus 218 ~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~~~~~dg~i~iw 295 (432)
...+.-+.|+|.-..+|.+ .+|.+.+..++ -+.+.++ .-+...++ +++|.||| ++||.|-.||+|++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwti-------p~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTI-------PIPGENVTASLCWRPDG-KLLAVGFKDGTIRLH 89 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec--cceeEec-------cCCCCccceeeeecCCC-CEEEEEecCCeEEEE
Confidence 3467789999999999999 99999998887 4555554 44555555 99999999 999999999999999
Q ss_pred Ecccccc
Q 014005 296 DMRQSAL 302 (432)
Q Consensus 296 d~~~~~~ 302 (432)
|..++..
T Consensus 90 Dve~~~~ 96 (665)
T KOG4640|consen 90 DVEKGGR 96 (665)
T ss_pred EccCCCc
Confidence 9998875
No 337
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.015 Score=53.66 Aligned_cols=131 Identities=13% Similarity=0.129 Sum_probs=89.1
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-------EEEEE-cCCeEEEEeCCCCCc-eeeEeecCCCCcC
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-------TFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMD 264 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~-~d~~i~lwd~~~~~~-~~~~~~~~~~~~~ 264 (432)
..++-.|++ .++.+..+ .-+.. |+-+.+.|+.. .-+.| +|..|.-||.+..+. .+... +
T Consensus 356 ~~l~klDIE---~GKIVeEW-k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~-------q 423 (644)
T KOG2395|consen 356 DKLYKLDIE---RGKIVEEW-KFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV-------Q 423 (644)
T ss_pred Ccceeeecc---cceeeeEe-eccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee-------e
Confidence 455556666 77777777 33443 77788888654 23457 899999999995554 22221 2
Q ss_pred CC----CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC
Q 014005 265 DL----TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (432)
Q Consensus 265 ~~----~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~ 340 (432)
+| .....|.+-..+| ++++|+.+|.|++||- .+... ...+.+ ...+|..+..+.||+
T Consensus 424 ~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~A---KTAlPg-------------LG~~I~hVdvtadGK 484 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRA---KTALPG-------------LGDAIKHVDVTADGK 484 (644)
T ss_pred ccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhh---hhcccc-------------cCCceeeEEeeccCc
Confidence 22 2235566666665 7899999999999995 55542 233333 367999999999999
Q ss_pred EEEEeeCCeEEEEec
Q 014005 341 HLLSRDYMNLKVFRY 355 (432)
Q Consensus 341 ~l~s~~~~~i~iwd~ 355 (432)
+|++-.+..+.+-++
T Consensus 485 wil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 485 WILATCKTYLLLIDT 499 (644)
T ss_pred EEEEecccEEEEEEE
Confidence 988766677777777
No 338
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.0035 Score=58.48 Aligned_cols=144 Identities=13% Similarity=0.085 Sum_probs=85.3
Q ss_pred cccccccCCCCCcceecceeeccc--eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeE--EEE
Q 014005 171 KNFMNEHNPPSFAHGYHLEWTENM--ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRI--NLW 244 (432)
Q Consensus 171 ~~i~~~~~~~~~~~~~~~~~~~~~--~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i--~lw 244 (432)
..+....|++++..+........+ .+.+++++.. +..+.. .-.+.-..-+|+|||+.++.. .||.. ++.
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g---~~~~i~--~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG---KRPVIL--NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCC---ccceee--ccCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence 456677888988887766654433 5888888843 333332 122334457899999998865 67765 455
Q ss_pred eCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC--eEEEEEccccccccccceeecccccccCCccc
Q 014005 245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (432)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~ 322 (432)
|+. +.....+ ....+.-+.-.|+|||..++++.+..| .|.++|+..+.. ..+..+
T Consensus 268 dl~--~~~~~~L-------t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-----~riT~~--------- 324 (425)
T COG0823 268 DLD--GKNLPRL-------TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-----TRLTFS--------- 324 (425)
T ss_pred cCC--CCcceec-------ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-----eEeecc---------
Confidence 555 3322222 222233346789999944444444555 466666665443 222221
Q ss_pred eeeeecceeEEEEcCCCCEEEEee
Q 014005 323 FTEIIASISDIKFANDGQHLLSRD 346 (432)
Q Consensus 323 ~~~~~~~v~~~~~s~dg~~l~s~~ 346 (432)
...-....|||||++|+..+
T Consensus 325 ----~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 325 ----GGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred ----CCCCcCccCCCCCCEEEEEe
Confidence 12222778999999998753
No 339
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.36 E-value=0.025 Score=41.12 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=45.5
Q ss_pred EEEEEEc---CCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 35 VSAIEFD---KTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 35 V~~~~fs---p~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
|+++++. .+| +.|++|+.|..||+|+-+. .+.++.-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----------------------------~~~Ei~e~---------- 42 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----------------------------IVAEITET---------- 42 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----------------------------EEEEEecc----------
Confidence 4555544 444 4799999999999998543 22333322
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV 144 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~ 144 (432)
+.|.++.- .. +..|+.+..+|+|-+|+-
T Consensus 43 ---~~v~~L~~--~~-~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 43 ---DKVTSLCS--LG-GGRFAYALANGTVGVYDR 70 (111)
T ss_pred ---cceEEEEE--cC-CCEEEEEecCCEEEEEeC
Confidence 56777777 33 368999999999999974
No 340
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.36 E-value=0.01 Score=50.35 Aligned_cols=85 Identities=13% Similarity=0.075 Sum_probs=50.5
Q ss_pred CCCCeeEEEeCCCCCEEEEE-cCC----eEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEE-EEeCCC
Q 014005 217 HDFNINSISNNSDCETFVSA-DDL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRG 290 (432)
Q Consensus 217 ~~~~i~~~~~~~~~~~l~~~-~d~----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg 290 (432)
+.-.|..++..+||...+.. ..| .--+--....++.++.+++.+.......+.|-+++.+.+. .+++ ++-..+
T Consensus 224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~-glV~lTSP~GN 302 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRD-GLVALTSPRGN 302 (366)
T ss_pred hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccC-CeEEEecCCCC
Confidence 34467778888888766544 222 1111111224455555544444434455678889998766 4444 444566
Q ss_pred eEEEEEcccccc
Q 014005 291 FVRLVDMRQSAL 302 (432)
Q Consensus 291 ~i~iwd~~~~~~ 302 (432)
...+||..+|..
T Consensus 303 ~~vi~da~tG~v 314 (366)
T COG3490 303 RAVIWDAATGAV 314 (366)
T ss_pred eEEEEEcCCCcE
Confidence 788999999985
No 341
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.34 E-value=0.00049 Score=66.38 Aligned_cols=110 Identities=10% Similarity=-0.003 Sum_probs=84.2
Q ss_pred ccccCCCCCcceecceeec--cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC
Q 014005 174 MNEHNPPSFAHGYHLEWTE--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD 250 (432)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~ 250 (432)
.-..|+|...+++..++++ .|.|.||--.. .+.+-. ..+-.+.+++|+|..-.|+.| .-|.+.+|... ..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtG----EPqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~-~~ 91 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFADTG----EPQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTN-TT 91 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEecCC----CCCccc--ccceehhhhccChHHHHHhhccccceeEEEecC-Cc
Confidence 3467899999998888766 77888885432 222211 122356789999999889999 89999999988 33
Q ss_pred ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (432)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 298 (432)
+..... ..|..+|..+.|||+| ..|+++..-|.+.+|...
T Consensus 92 e~htv~-------~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 92 ETHTVV-------ETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeeec-------cCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence 332222 6899999999999999 999999999999999765
No 342
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.31 E-value=0.0008 Score=38.39 Aligned_cols=37 Identities=27% Similarity=0.626 Sum_probs=31.6
Q ss_pred eeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 014005 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK 143 (432)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd 143 (432)
+...+..|. ..|.++.| .+++.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~------------~~i~~~~~--~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHT------------GPVTSVAF--SPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecC------------CceeEEEE--CCCCCEEEEecCCCeEEEcC
Confidence 345666777 89999999 78889999999999999996
No 343
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.30 E-value=0.093 Score=45.08 Aligned_cols=208 Identities=11% Similarity=0.133 Sum_probs=106.1
Q ss_pred CcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeee--eecCCccccccch
Q 014005 33 DIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE--FQSHEPEFDYLKS 109 (432)
Q Consensus 33 ~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~h~~~~~~~~~ 109 (432)
+.++.+.|+|+.+ ++++....+.|...+.+ ++.+ +. +.+.
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vl---------------------------r~i~l~g~--------- 64 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVL---------------------------RRIPLDGF--------- 64 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EE---------------------------EEEE-SS----------
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEE---------------------------EEEeCCCC---------
Confidence 4699999999755 56667777787766754 3322 22 2221
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc----eeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK----VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 185 (432)
+..-.|++ ..++.++++.-.++.+.++++.... ......+.... ....+..+..++|++....+
T Consensus 65 ----~D~EgI~y--~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~------~~~~N~G~EGla~D~~~~~L 132 (248)
T PF06977_consen 65 ----GDYEGITY--LGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGF------PNKGNKGFEGLAYDPKTNRL 132 (248)
T ss_dssp ----SSEEEEEE---STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---------S---SS--EEEEEETTTTEE
T ss_pred ----CCceeEEE--ECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEeccc------ccCCCcceEEEEEcCCCCEE
Confidence 45678888 5677666666678999999984321 11111111000 01134678999999987777
Q ss_pred ecceeeccceEEEEeecccccceeeEEe-------ecCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCCCCCceeeEe
Q 014005 186 YHLEWTENMATKIANVGNSVHARCQKVY-------PHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIV 256 (432)
Q Consensus 186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~ 256 (432)
..+.. ..-..++.+............ .......+.+++++|.. ++++.+ .+..+..+|.+ ++.+..+
T Consensus 133 ~v~kE--~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~ 208 (248)
T PF06977_consen 133 FVAKE--RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSL 208 (248)
T ss_dssp EEEEE--SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEE
T ss_pred EEEeC--CCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEE
Confidence 76655 444455555431001111100 01234468889999864 455566 88899999966 6666666
Q ss_pred ecCCC--CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 014005 257 DMKPS--NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (432)
Q Consensus 257 ~~~~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iw 295 (432)
.+... .+...-...-.|+|+++| ++.+ .++-+..++|
T Consensus 209 ~L~~g~~gl~~~~~QpEGIa~d~~G-~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 209 SLDRGFHGLSKDIPQPEGIAFDPDG-NLYI-VSEPNLFYRF 247 (248)
T ss_dssp E-STTGGG-SS---SEEEEEE-TT---EEE-EETTTEEEEE
T ss_pred EeCCcccCcccccCCccEEEECCCC-CEEE-EcCCceEEEe
Confidence 44332 111122356789999998 6555 4455555544
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.29 E-value=0.027 Score=54.12 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=41.3
Q ss_pred CCCCcEEEEEeCCCeEEEEEccc----cccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee--CCeE
Q 014005 277 PIYCNLLAYSSSRGFVRLVDMRQ----SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNL 350 (432)
Q Consensus 277 p~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~--~~~i 350 (432)
++| ++... .++.|.+.|.++ +... +..+.- ......+.+||||++++.++ ++++
T Consensus 286 kdG-K~~~V--~gn~V~VID~~t~~~~~~~v---~~yIPV--------------GKsPHGV~vSPDGkylyVanklS~tV 345 (635)
T PRK02888 286 KAG-KFKTI--GGSKVPVVDGRKAANAGSAL---TRYVPV--------------PKNPHGVNTSPDGKYFIANGKLSPTV 345 (635)
T ss_pred hCC-CEEEE--CCCEEEEEECCccccCCcce---EEEEEC--------------CCCccceEECCCCCEEEEeCCCCCcE
Confidence 455 44443 367899999887 2211 333333 35778999999999998853 3999
Q ss_pred EEEec
Q 014005 351 KVFRY 355 (432)
Q Consensus 351 ~iwd~ 355 (432)
.|.|+
T Consensus 346 SVIDv 350 (635)
T PRK02888 346 TVIDV 350 (635)
T ss_pred EEEEC
Confidence 99999
No 345
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.28 E-value=0.0027 Score=60.29 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=54.9
Q ss_pred CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
+...|.=-+++..+++++.|+.-|.+.+|+..+++... ....+-.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~--------------------------~~~~~~~--------- 76 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK--------------------------LKNEGAT--------- 76 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhc--------------------------ccccCcc---------
Confidence 34455555667889999999999999999988775320 1111222
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK 148 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~ 148 (432)
+.+..+.. +++..++|.|+..|.|.++-+..+.
T Consensus 77 ---~~~~~~~v--s~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 77 ---GITCVRSV--SSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred ---ceEEEEEe--cchhHhhhhhcCCceEEeehhhccC
Confidence 44445555 7888888999999999999887643
No 346
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.25 E-value=0.00099 Score=37.99 Aligned_cols=32 Identities=34% Similarity=0.399 Sum_probs=29.2
Q ss_pred CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 014005 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (432)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd 296 (432)
..|...|+++.|++.+ .++++++.|+.+++||
T Consensus 9 ~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 5677889999999998 8999999999999996
No 347
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.20 E-value=0.14 Score=47.96 Aligned_cols=149 Identities=8% Similarity=0.043 Sum_probs=75.0
Q ss_pred CEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC--CCcceecceeeccceEEEEeecccc
Q 014005 128 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP--SFAHGYHLEWTENMATKIANVGNSV 205 (432)
Q Consensus 128 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~v~i~d~~~~~ 205 (432)
..++.++.++.+...|..+++..-......... .........+..+| .+..++.+.. ++.+..+|..
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~------~~~~~~~~~~~~sP~v~~~~vy~~~~--~g~l~ald~~--- 274 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG------ATEIDRLVDVDTTPVVVGGVVYALAY--NGNLVALDLR--- 274 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCC------ccchhcccccCCCcEEECCEEEEEEc--CCeEEEEECC---
Confidence 356667788999999988887432211110000 00000011111122 1233444444 6777777776
Q ss_pred cceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEE
Q 014005 206 HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (432)
Q Consensus 206 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 284 (432)
+++.+..... .....+.. .+..+..+ .++.+..+|.+ +++.+... . . ... ....+.... + ..|+
T Consensus 275 tG~~~W~~~~---~~~~~~~~--~~~~vy~~~~~g~l~ald~~-tG~~~W~~--~--~-~~~-~~~~sp~v~--~-g~l~ 339 (394)
T PRK11138 275 SGQIVWKREY---GSVNDFAV--DGGRIYLVDQNDRVYALDTR-GGVELWSQ--S--D-LLH-RLLTAPVLY--N-GYLV 339 (394)
T ss_pred CCCEEEeecC---CCccCcEE--ECCEEEEEcCCCeEEEEECC-CCcEEEcc--c--c-cCC-CcccCCEEE--C-CEEE
Confidence 4444333211 11111222 34455556 89999999998 45443221 0 0 000 111122222 3 5677
Q ss_pred EEeCCCeEEEEEcccccc
Q 014005 285 YSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 285 ~~~~dg~i~iwd~~~~~~ 302 (432)
.++.||.+...|..+|+.
T Consensus 340 v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 340 VGDSEGYLHWINREDGRF 357 (394)
T ss_pred EEeCCCEEEEEECCCCCE
Confidence 889999999999999886
No 348
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.19 E-value=0.00075 Score=65.15 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=79.0
Q ss_pred EEEeCCCCCEEEEE-----cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005 223 SISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (432)
Q Consensus 223 ~~~~~~~~~~l~~~-----~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~ 297 (432)
-..|+|...+++++ ..|.|.||--. +++.+- -...-.+++++|+|.. -+|+.|-.-|.+.+|..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfadt--GEPqr~--------Vt~P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFADT--GEPQRD--------VTYPVHATSLCWHPEE-FVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEecC--CCCCcc--------cccceehhhhccChHH-HHHhhccccceeEEEec
Confidence 45799999998865 36788887443 333221 1122336789999997 88999999999999998
Q ss_pred cccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 298 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
.+.+. -.....| ..+|..+.||++|..|.+++. |.+.+|.+
T Consensus 89 ~~~e~----htv~~th-------------~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~ 130 (1416)
T KOG3617|consen 89 NTTET----HTVVETH-------------PAPIQGLDWSHDGTVLMTLDNPGSVHLWRY 130 (1416)
T ss_pred CCcee----eeeccCC-------------CCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence 86553 1233344 789999999999999999988 99999988
No 349
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.18 E-value=0.16 Score=46.78 Aligned_cols=213 Identities=14% Similarity=0.240 Sum_probs=104.2
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCc-ccccccccc----ccccccccCCCCCcceecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF-VSSENTLLA----EKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~~~~~ 188 (432)
..+....| +|+|+.++... ++.|.+++..++....+..-. ... ...+.--.. =+.-..+-|+|++++++..
T Consensus 43 ~~~~~~~~--sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 43 PKLQDAKW--SPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp TTBSEEEE---SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred ccccccee--ecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence 67888999 89999998886 578999998777544333211 110 000000000 0223567789999888766
Q ss_pred eeecc----------------------------------ceEEEEeecccccceeeEE-ee---cCCCCCeeEEEeCCCC
Q 014005 189 EWTEN----------------------------------MATKIANVGNSVHARCQKV-YP---HAHDFNINSISNNSDC 230 (432)
Q Consensus 189 ~~~~~----------------------------------~~v~i~d~~~~~~~~~~~~-~~---~~~~~~i~~~~~~~~~ 230 (432)
..... -.+.++|+... +.... .. ......+..+.|.+++
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~---~~~~~~~~~~~~~~~~yl~~v~W~~d~ 195 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASG---KTTELDPPNSLNPQDYYLTRVGWSPDG 195 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSST---CCCEE---HHHHTSSEEEEEEEEEETT
T ss_pred EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCC---cEEEeeeccccCCCccCcccceecCCC
Confidence 53210 02333444321 11110 00 1234457778888888
Q ss_pred CEEEEE---cC---CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEc-CCCCcEEEEEeCCCe--EEEEEccccc
Q 014005 231 ETFVSA---DD---LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGF--VRLVDMRQSA 301 (432)
Q Consensus 231 ~~l~~~---~d---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~dg~--i~iwd~~~~~ 301 (432)
+.++.. .+ ..+.+.|.. ++.+-....... .+.-..-....|. +++..++.....||- |.+++...+.
T Consensus 196 ~~l~~~~~nR~q~~~~l~~~d~~-tg~~~~~~~e~~---~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~ 271 (353)
T PF00930_consen 196 KRLWVQWLNRDQNRLDLVLCDAS-TGETRVVLEETS---DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK 271 (353)
T ss_dssp EEEEEEEEETTSTEEEEEEEEEC-TTTCEEEEEEES---SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE
T ss_pred cEEEEEEcccCCCEEEEEEEECC-CCceeEEEEecC---CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc
Confidence 744432 22 235556666 333222221111 1111222345554 666566666777775 4455555444
Q ss_pred cccccceeecccccccCCccceeeeeccee-EEEEcCCCCEEE-Eee--C-CeEEEEec
Q 014005 302 LCDHSARILRDAAESHGSKSFFTEIIASIS-DIKFANDGQHLL-SRD--Y-MNLKVFRY 355 (432)
Q Consensus 302 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~-~~~~s~dg~~l~-s~~--~-~~i~iwd~ 355 (432)
. +.+... .-.|. -+.|+++++.|. ++. . ..-.+|.+
T Consensus 272 ~-----~~lT~G-------------~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 272 P-----RQLTSG-------------DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp E-----EESS-S-------------SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred e-----eccccC-------------ceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence 2 333331 34553 477888877554 332 2 45555555
No 350
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.16 E-value=0.052 Score=39.51 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=40.3
Q ss_pred CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEc---CCCCcEEEEEeCCCeEE
Q 014005 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH---PIYCNLLAYSSSRGFVR 293 (432)
Q Consensus 218 ~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~~l~~~~~dg~i~ 293 (432)
.+.|.+++-... ..++.+ .+|+|-+|+.. .+..++ +. ...++++.+. -+|..-|++|-.+|.|-
T Consensus 42 ~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRi--------KS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 42 TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRI--------KS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeee--------cc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 346667766655 468888 99999999775 222221 11 1225555443 34446799999999875
Q ss_pred E
Q 014005 294 L 294 (432)
Q Consensus 294 i 294 (432)
+
T Consensus 110 ~ 110 (111)
T PF14783_consen 110 V 110 (111)
T ss_pred e
Confidence 3
No 351
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.15 E-value=0.034 Score=55.43 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=51.9
Q ss_pred CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 014005 217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (432)
Q Consensus 217 ~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iw 295 (432)
......|++-+.+| ++|+| .+|.||+||.- +...++ .+.+...+|..|..+.|| +++++.+ +..+-|+
T Consensus 576 ~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~--g~~AKT------~lp~lG~pI~~iDvt~DG-kwilaTc-~tyLlLi 644 (794)
T PF08553_consen 576 SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL--GKRAKT------ALPGLGDPIIGIDVTADG-KWILATC-KTYLLLI 644 (794)
T ss_pred cCCCceEEEecCCc-eEEEEeCCCcEEeeccc--chhhhh------cCCCCCCCeeEEEecCCC-cEEEEee-cceEEEE
Confidence 34467788888888 67777 99999999954 322222 246778999999999999 7766444 5577788
Q ss_pred Ecc
Q 014005 296 DMR 298 (432)
Q Consensus 296 d~~ 298 (432)
+..
T Consensus 645 ~t~ 647 (794)
T PF08553_consen 645 DTL 647 (794)
T ss_pred EEe
Confidence 764
No 352
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.13 E-value=0.25 Score=46.70 Aligned_cols=241 Identities=13% Similarity=0.142 Sum_probs=123.7
Q ss_pred cEEEEEEcCCCCEEEEe-c----ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 34 IVSAIEFDKTGDYLAVG-D----RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~-~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
.+....+||+|+++|.+ + ....++++|+++++.+ ...+..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l--------------------------~d~i~~--------- 169 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL--------------------------PDGIEN--------- 169 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE--------------------------EEEEEE---------
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc--------------------------CCcccc---------
Confidence 34467899999998864 2 2246999999998632 011111
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCC-----------CeEEEEEccCccee--eeeecCCCCcccccccccccccccc
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTND-----------KTIKLWKVRDQKVK--KIKEMDHFPFVSSENTLLAEKNFMN 175 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d-----------~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (432)
..-..+.| .++++.|+....+ ..|..|++.+.... .+....... .....
T Consensus 170 -----~~~~~~~W--~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~-----------~~~~~ 231 (414)
T PF02897_consen 170 -----PKFSSVSW--SDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEP-----------FWFVS 231 (414)
T ss_dssp -----EESEEEEE--CTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCT-----------TSEEE
T ss_pred -----cccceEEE--eCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCC-----------cEEEE
Confidence 11223899 7888877666433 24778888766533 332222211 11456
Q ss_pred ccCCCCCcceecceeec-c-ceEEEEeeccc--ccceeeEEeecCCCCCeeEEEeCCCCCEEEEE----cCCeEEEEeCC
Q 014005 176 EHNPPSFAHGYHLEWTE-N-MATKIANVGNS--VHARCQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLE 247 (432)
Q Consensus 176 ~~~~~~~~~~~~~~~~~-~-~~v~i~d~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~d~~i~lwd~~ 247 (432)
+..+++++++....... + ..+.+.++... ......... ....+....+... ++.+++.. .++.|.-.++.
T Consensus 232 ~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~-~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~ 309 (414)
T PF02897_consen 232 VSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS-PREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLA 309 (414)
T ss_dssp EEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE-ESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETT
T ss_pred EEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe-CCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEeccc
Confidence 77789999887665533 3 56777777642 112222322 2233333334333 44444433 25677777777
Q ss_pred CCCc--eeeEeecCCCCcCCCCc--ceEEEEEcCCCCcEEEEEeCCC--eEEEEEcc-ccccccccceeecccccccCCc
Q 014005 248 ISDQ--CFNIVDMKPSNMDDLTE--VITSAEFHPIYCNLLAYSSSRG--FVRLVDMR-QSALCDHSARILRDAAESHGSK 320 (432)
Q Consensus 248 ~~~~--~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~ 320 (432)
.... ....+ ..+.. .+..+....+ .+++....++ .|+++|+. +... ..... +.
T Consensus 310 ~~~~~~~~~~l-------~~~~~~~~l~~~~~~~~--~Lvl~~~~~~~~~l~v~~~~~~~~~-----~~~~~-p~----- 369 (414)
T PF02897_consen 310 DPSPAEWWTVL-------IPEDEDVSLEDVSLFKD--YLVLSYRENGSSRLRVYDLDDGKES-----REIPL-PE----- 369 (414)
T ss_dssp STSGGGEEEEE-------E--SSSEEEEEEEEETT--EEEEEEEETTEEEEEEEETT-TEEE-----EEEES-SS-----
T ss_pred ccccccceeEE-------cCCCCceeEEEEEEECC--EEEEEEEECCccEEEEEECCCCcEE-----eeecC-Cc-----
Confidence 4332 11122 33333 3555554432 4555555555 57888888 3322 22221 00
Q ss_pred cceeeeecceeEEEEcCCCCEEE-E-eeC---CeEEEEec
Q 014005 321 SFFTEIIASISDIKFANDGQHLL-S-RDY---MNLKVFRY 355 (432)
Q Consensus 321 ~~~~~~~~~v~~~~~s~dg~~l~-s-~~~---~~i~iwd~ 355 (432)
.+.|..+...+++..+. + .+. .+++-||+
T Consensus 370 ------~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~ 403 (414)
T PF02897_consen 370 ------AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDL 403 (414)
T ss_dssp ------SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEET
T ss_pred ------ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 24455666556655433 2 222 78888887
No 353
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0022 Score=60.04 Aligned_cols=75 Identities=19% Similarity=0.326 Sum_probs=62.9
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
...|.-+.|+|.-.++|++..+|.+.+..++-.+ +.++.-|.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR----------------------------lwtip~p~---------- 61 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQR----------------------------LWTIPIPG---------- 61 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEeccce----------------------------eEeccCCC----------
Confidence 4578889999999999999999999988886433 24555455
Q ss_pred hhccee-EEEEEEcCCCCEEEEEeCCCeEEEEEccCcc
Q 014005 112 IEEKIN-RVRWCAAPNGSMFILSTNDKTIKLWKVRDQK 148 (432)
Q Consensus 112 ~~~~v~-~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~ 148 (432)
..++ +++| .|||+.++.|-.||+|++.|++++.
T Consensus 62 --~~v~~sL~W--~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 62 --ENVTASLCW--RPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred --Cccceeeee--cCCCCEEEEEecCCeEEEEEccCCC
Confidence 5566 9999 8999999999999999999999876
No 354
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.06 E-value=0.058 Score=48.90 Aligned_cols=149 Identities=14% Similarity=0.070 Sum_probs=88.2
Q ss_pred Ccceecceeec-------c-ceEEEEeeccc-c-cceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCc
Q 014005 182 FAHGYHLEWTE-------N-MATKIANVGNS-V-HARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ 251 (432)
Q Consensus 182 ~~~~~~~~~~~-------~-~~v~i~d~~~~-~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~ 251 (432)
..+++.|+... . |.+.++++... . ..+..........+.|++++-- ++ .++++.++.|.+|++.....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~~~ 119 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNSKT 119 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEETTEEEEEEEETTSS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEeecCEEEEEEccCccc
Confidence 46666665422 2 88999999852 0 0122222234557889988766 34 57777789999999994331
Q ss_pred eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeeccee
Q 014005 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (432)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~ 331 (432)
....- .......+.++... + ++++.|.....+.++..+..... +..+... . ...+++
T Consensus 120 l~~~~------~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~~~~~~~~---l~~va~d---~--------~~~~v~ 176 (321)
T PF03178_consen 120 LLKKA------FYDSPFYITSLSVF--K-NYILVGDAMKSVSLLRYDEENNK---LILVARD---Y--------QPRWVT 176 (321)
T ss_dssp EEEEE------EE-BSSSEEEEEEE--T-TEEEEEESSSSEEEEEEETTTE----EEEEEEE---S--------S-BEEE
T ss_pred chhhh------eecceEEEEEEecc--c-cEEEEEEcccCEEEEEEEccCCE---EEEEEec---C--------CCccEE
Confidence 22221 11122256666555 4 68889998888888865531110 1222210 0 035788
Q ss_pred EEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 332 DIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 332 ~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
++.|-+|+..++.++. |.+.++..
T Consensus 177 ~~~~l~d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 177 AAEFLVDEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp EEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred EEEEecCCcEEEEEcCCCeEEEEEE
Confidence 9999866677777766 99999988
No 355
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.99 E-value=0.26 Score=44.71 Aligned_cols=182 Identities=10% Similarity=0.063 Sum_probs=82.3
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccC--CCCCcceecceee----------
Q 014005 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN--PPSFAHGYHLEWT---------- 191 (432)
Q Consensus 124 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~---------- 191 (432)
+++++.++-......|+-.|+.+.+...+......- .-...| +.++..++.....
T Consensus 89 s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~-------------~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~ 155 (386)
T PF14583_consen 89 SPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDW-------------KGYGTWVANSDCTKLVGIEISREDWKPLTKW 155 (386)
T ss_dssp -TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTE-------------EEEEEEEE-TTSSEEEEEEEEGGG-----SH
T ss_pred ecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccc-------------ccccceeeCCCccEEEEEEEeehhccCcccc
Confidence 677777766655677888888887765554443211 111111 2223222221110
Q ss_pred --------c--cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEE-E----cCCe-EEEEeCCCCCceeeE
Q 014005 192 --------E--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A----DDLR-INLWNLEISDQCFNI 255 (432)
Q Consensus 192 --------~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~----~d~~-i~lwd~~~~~~~~~~ 255 (432)
+ ...|.--|+. +++....+ .....+..+.|+|....+++ + .+.. -+||-++..+...+.
T Consensus 156 ~~f~e~~~a~p~~~i~~idl~---tG~~~~v~--~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~ 230 (386)
T PF14583_consen 156 KGFREFYEARPHCRIFTIDLK---TGERKVVF--EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKK 230 (386)
T ss_dssp HHHHHHHHC---EEEEEEETT---T--EEEEE--EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EE
T ss_pred HHHHHHHhhCCCceEEEEECC---CCceeEEE--ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCccee
Confidence 0 1233334444 44443333 34567889999997665553 3 2332 367777655555544
Q ss_pred eecCCCCcCCCCcceEEEEEcCCCCcEEEEEe----CCCeEEEEEccccccccccceeecccccccCCccceeeeeccee
Q 014005 256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (432)
Q Consensus 256 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~ 331 (432)
+ .. ......+..=-|.|||..+...+. .+..|.-+|+.+++. +.+.. ..+..
T Consensus 231 v--~~---~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-----~~~~~--------------~p~~~ 286 (386)
T PF14583_consen 231 V--HR---RMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-----RRLME--------------MPWCS 286 (386)
T ss_dssp S--S------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-----EEEEE--------------E-SEE
T ss_pred e--ec---CCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-----eEEEe--------------CCcee
Confidence 3 11 112344566678999944333332 233566677777653 22221 23455
Q ss_pred EEEEcCCCCEEEE-eeC
Q 014005 332 DIKFANDGQHLLS-RDY 347 (432)
Q Consensus 332 ~~~~s~dg~~l~s-~~~ 347 (432)
.+--++||++++. |++
T Consensus 287 H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 287 HFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEE-TTSSEEEEEE--
T ss_pred eeEEcCCCCEEEecCCC
Confidence 6667899999887 443
No 356
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.98 E-value=0.049 Score=50.44 Aligned_cols=156 Identities=12% Similarity=0.096 Sum_probs=81.5
Q ss_pred ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc
Q 014005 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (432)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 194 (432)
.|+.++| .++..-|++|...|.|.+|.....+...-.... .-....+.+-. .. ++
T Consensus 3 ~v~~vs~--a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~---------------~~~~~~~~~~~---~~-----~~ 57 (395)
T PF08596_consen 3 SVTHVSF--APETLELAVGLESGEVVLFKFGKNQNYGNREQP---------------PDLDYNFRRFS---LN-----NS 57 (395)
T ss_dssp -EEEEEE--ETTTTEEEEEETTS-EEEEEEEE---------------------------------S-----GG-----GS
T ss_pred eEEEEEe--cCCCceEEEEccCCcEEEEEcccCCCCCccCCC---------------cccCccccccc---cc-----CC
Confidence 5788999 778888999999999999998765422100000 00000000000 00 11
Q ss_pred eEEEEeecccc------cceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC-CcCCC
Q 014005 195 ATKIANVGNSV------HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-NMDDL 266 (432)
Q Consensus 195 ~v~i~d~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~-~~~~~ 266 (432)
.-.+-|+.... .-.+...+ ....+.|++++.+.-| ++|.| .+|.+.+.|+| ....+..-.+... .-...
T Consensus 58 ~~~l~di~~r~~~~~~~gf~P~~l~-~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~R-GPavI~~~~i~~~~~~~~~ 134 (395)
T PF08596_consen 58 PGKLTDISDRAPPSLKEGFLPLTLL-DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLR-GPAVIYNENIRESFLSKSS 134 (395)
T ss_dssp S-SEEE-GGG--TT-SEEEEEEEEE----S-SEEEEEE-BTS-EEEEEETTSEEEEEETT-TTEEEEEEEGGG--T-SS-
T ss_pred CcceEEehhhCCcccccccCchhhe-eccCCcEeEEecCCCc-EEEEEecCCcEEEEECC-CCeEEeecccccccccccc
Confidence 11222222110 11233334 4558899999998555 99999 99999999999 4444443323221 11223
Q ss_pred CcceEEEEEcC-----CC--CcEEEEEeCCCeEEEEEcc
Q 014005 267 TEVITSAEFHP-----IY--CNLLAYSSSRGFVRLVDMR 298 (432)
Q Consensus 267 ~~~v~~~~~~p-----~~--~~~l~~~~~dg~i~iwd~~ 298 (432)
...++++.|.. |+ .-.|++|...|.+.+|.+.
T Consensus 135 ~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 135 SSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp ---EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred ccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence 45688888862 11 2578889999999999876
No 357
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.92 E-value=0.28 Score=43.74 Aligned_cols=86 Identities=9% Similarity=0.108 Sum_probs=53.5
Q ss_pred eEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 117 NRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 117 ~~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
-.+.. +|+++.+++++ ..-.|.+||..+-....-..+...+. .........++++.++++++
T Consensus 39 ~~~~~--spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R------~~~~~~~~~~~ls~dgk~~~ 110 (342)
T PF06433_consen 39 GNVAL--SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR------AQVVPYKNMFALSADGKFLY 110 (342)
T ss_dssp EEEEE---TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--------BS--GGGEEE-TTSSEEE
T ss_pred CceeE--CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch------heecccccceEEccCCcEEE
Confidence 34556 78999888753 34579999998876444333332100 00012334567889999999
Q ss_pred cceeeccceEEEEeecccccceeeEEe
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVY 213 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~ 213 (432)
....++...|.+-|+. ..+.+..+
T Consensus 111 V~N~TPa~SVtVVDl~---~~kvv~ei 134 (342)
T PF06433_consen 111 VQNFTPATSVTVVDLA---AKKVVGEI 134 (342)
T ss_dssp EEEESSSEEEEEEETT---TTEEEEEE
T ss_pred EEccCCCCeEEEEECC---CCceeeee
Confidence 9988888899999998 55555554
No 358
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.91 E-value=0.0032 Score=38.07 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=29.0
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecC
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVG 63 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~ 63 (432)
...|.+++|+|..++||.|..+|.|.|+.++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 44799999999999999999999999999844
No 359
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.78 E-value=0.36 Score=43.01 Aligned_cols=207 Identities=14% Similarity=0.121 Sum_probs=104.1
Q ss_pred EEEEcCCCCEEEEe--cccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhc
Q 014005 37 AIEFDKTGDYLAVG--DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (432)
Q Consensus 37 ~~~fsp~g~~l~t~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (432)
.++++.+|+++... +--..|.|-|+..++.. .++.-
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv---------------------------~ei~~--------------- 136 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVV---------------------------GEIDT--------------- 136 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEE---------------------------EEEEG---------------
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCcee---------------------------eeecC---------------
Confidence 35677888877653 33456888888776532 22211
Q ss_pred ceeEEEEEEcCCCCEEEEEeCCCeEEEEEcc-CcceeeeeecCCCCcccccccccccccc-ccccCCCCCcceecceeec
Q 014005 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNF-MNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~ 192 (432)
--|.-..|+.+ +.|.+-|.||.+.-..+. .|+......-.+++ .+.++ ..-++...+..++--+.
T Consensus 137 -PGC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~---------~~dp~f~~~~~~~~~~~~~F~Sy-- 203 (342)
T PF06433_consen 137 -PGCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDP---------DDDPLFEHPAYSRDGGRLYFVSY-- 203 (342)
T ss_dssp -TSEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEEESST---------TTS-B-S--EEETTTTEEEEEBT--
T ss_pred -CCEEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeeccccCC---------CCcccccccceECCCCeEEEEec--
Confidence 11333345443 357788899999999886 44433211111111 00111 11122222222222233
Q ss_pred cceEEEEeecccccceeeEEeec---------CCCCCeeEEEeCCCCCEEEEE-c--------CC--eEEEEeCCCCCce
Q 014005 193 NMATKIANVGNSVHARCQKVYPH---------AHDFNINSISNNSDCETFVSA-D--------DL--RINLWNLEISDQC 252 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~-~--------d~--~i~lwd~~~~~~~ 252 (432)
+|.|+--|+... ..+....+.. .-.+.-.-+++++..+.|.+- . |+ .|.++|+. +++.
T Consensus 204 ~G~v~~~dlsg~-~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~-t~kr 281 (342)
T PF06433_consen 204 EGNVYSADLSGD-SAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK-THKR 281 (342)
T ss_dssp TSEEEEEEETTS-SEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT-TTEE
T ss_pred CCEEEEEeccCC-cccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC-CCeE
Confidence 666666666543 1122222210 012334457777655444442 1 22 35666777 5666
Q ss_pred eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEE-eCCCeEEEEEccccccccccceeecc
Q 014005 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRD 312 (432)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~ 312 (432)
+..++ ....+.++..+.+...+|++. ..++.+.+||..+|+. ++.+++
T Consensus 282 v~Ri~--------l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~----~~~~~~ 330 (342)
T PF06433_consen 282 VARIP--------LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL----VRSIEQ 330 (342)
T ss_dssp EEEEE--------EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E----EEEE--
T ss_pred EEEEe--------CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE----Eeehhc
Confidence 66551 123477999999875566554 4689999999999987 566554
No 360
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.61 E-value=0.18 Score=45.75 Aligned_cols=145 Identities=14% Similarity=0.105 Sum_probs=86.3
Q ss_pred CCEEEEEeC----------CCeEEEEEccCc-----ceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 127 GSMFILSTN----------DKTIKLWKVRDQ-----KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 127 ~~~l~s~~~----------d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
..+++.|+. .|.|.++++... +++.+..... +++|.++..- .+. ++.+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~------------~g~V~ai~~~-~~~-lv~~~-- 105 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV------------KGPVTAICSF-NGR-LVVAV-- 105 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE------------SS-EEEEEEE-TTE-EEEEE--
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee------------cCcceEhhhh-CCE-EEEee--
Confidence 467777743 289999999874 3443333222 2566666554 233 33333
Q ss_pred ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (432)
++.+.+|++.....-.....+ .....+.++... +++++.| ....+.++..+.....+..+ .......++
T Consensus 106 -g~~l~v~~l~~~~~l~~~~~~--~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~v-----a~d~~~~~v 175 (321)
T PF03178_consen 106 -GNKLYVYDLDNSKTLLKKAFY--DSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILV-----ARDYQPRWV 175 (321)
T ss_dssp -TTEEEEEEEETTSSEEEEEEE---BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEE-----EEESS-BEE
T ss_pred -cCEEEEEEccCcccchhhhee--cceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEE-----EecCCCccE
Confidence 679999999854311222222 223355555554 5688899 67777777555224434433 113335678
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (432)
Q Consensus 271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 298 (432)
+++.|-+++ ..++.+..+|.+.++...
T Consensus 176 ~~~~~l~d~-~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 176 TAAEFLVDE-DTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEE-SS-SEEEEEETTSEEEEEEE-
T ss_pred EEEEEecCC-cEEEEEcCCCeEEEEEEC
Confidence 999999887 689999999999999876
No 361
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.53 E-value=0.54 Score=41.96 Aligned_cols=148 Identities=12% Similarity=0.015 Sum_probs=81.7
Q ss_pred cccccccCCCCCcceeccee-----ec--cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeE
Q 014005 171 KNFMNEHNPPSFAHGYHLEW-----TE--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRI 241 (432)
Q Consensus 171 ~~i~~~~~~~~~~~~~~~~~-----~~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i 241 (432)
...++....|++.+-++... .. ...-.+|.+.. .+..++.+ ..+-..-+.++||||++.+..+ ..+.|
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p--~g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT~~~~i 187 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP--DGGVVRLL-DDDLTIPNGLAFSPDGKTLYVADTPANRI 187 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC--CCCEEEee-cCcEEecCceEECCCCCEEEEEeCCCCeE
Confidence 34445556666655544332 11 11124454441 12333333 4556677899999999999888 45788
Q ss_pred EEEeCCC-CCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC-eEEEEEccccccccccceeecccccccCC
Q 014005 242 NLWNLEI-SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-FVRLVDMRQSALCDHSARILRDAAESHGS 319 (432)
Q Consensus 242 ~lwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~h~~~~~~ 319 (432)
.-|++.. .......- .........+..-.++...+| ++.+++..+| .|.+|+.. |++ +..+.-.
T Consensus 188 ~r~~~d~~~g~~~~~~--~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v~~~~pd-G~l----~~~i~lP------ 253 (307)
T COG3386 188 HRYDLDPATGPIGGRR--GFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRVVRFNPD-GKL----LGEIKLP------ 253 (307)
T ss_pred EEEecCcccCccCCcc--eEEEccCCCCCCCceEEeCCC-CEEEecccCCceEEEECCC-CcE----EEEEECC------
Confidence 8887761 11110000 000112234556677888888 7665555554 89999988 665 4555551
Q ss_pred ccceeeeecceeEEEEcC-CCCEE
Q 014005 320 KSFFTEIIASISDIKFAN-DGQHL 342 (432)
Q Consensus 320 ~~~~~~~~~~v~~~~~s~-dg~~l 342 (432)
...+++++|-- +.+.|
T Consensus 254 -------~~~~t~~~FgG~~~~~L 270 (307)
T COG3386 254 -------VKRPTNPAFGGPDLNTL 270 (307)
T ss_pred -------CCCCccceEeCCCcCEE
Confidence 25677777753 44433
No 362
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.41 E-value=0.4 Score=47.08 Aligned_cols=113 Identities=9% Similarity=0.076 Sum_probs=60.2
Q ss_pred cccccccCCCCCcceecceeeccceEEEEeecccccce-ee---EEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeC
Q 014005 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHAR-CQ---KVYPHAHDFNINSISNNSDCETFVSADDLRINLWNL 246 (432)
Q Consensus 171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~-~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~ 246 (432)
+.|..+.|+|++..++... ++.|.+--+.....+. .+ +.+.......+.++.|..++.+++...++...+|.+
T Consensus 448 g~Issl~wSpDG~RiA~i~---~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v 524 (591)
T PRK13616 448 GPISELQLSRDGVRAAMII---GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYV 524 (591)
T ss_pred CCcCeEEECCCCCEEEEEE---CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEE
Confidence 5799999999999887654 4566553222111221 11 112123344468899999998553335444445555
Q ss_pred CCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEE
Q 014005 247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 294 (432)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 294 (432)
...+.....+ .-......+..++-+++ . ++....+|.+.+
T Consensus 525 ~vDG~~~~~~-----~~~n~~~~v~~vaa~~~--~-iyv~~~~g~~~l 564 (591)
T PRK13616 525 NLDGSNSDAL-----PSRNLSAPVVAVAASPS--T-VYVTDARAVLQL 564 (591)
T ss_pred ecCCcccccc-----CCCCccCceEEEecCCc--e-EEEEcCCceEEe
Confidence 4334332211 00123456777777763 3 444566664443
No 363
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.38 E-value=0.51 Score=39.93 Aligned_cols=65 Identities=15% Similarity=0.280 Sum_probs=44.7
Q ss_pred CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEE
Q 014005 44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (432)
Q Consensus 44 g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~ 123 (432)
|++++.|...|.+.+.+.+++.+. ..+..- +.|-+-+-+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~---------------------------w~f~~~-------------~~vk~~a~~- 101 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQI---------------------------WNFVIL-------------ETVKVRAQC- 101 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhhe---------------------------eeeeeh-------------hhhccceEE-
Confidence 567788888888888888887533 222222 222222222
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCcce
Q 014005 124 APNGSMFILSTNDKTIKLWKVRDQKV 149 (432)
Q Consensus 124 s~~~~~l~s~~~d~~i~iwd~~~~~~ 149 (432)
.+++.++..|+.|++.+..|.++...
T Consensus 102 d~~~glIycgshd~~~yalD~~~~~c 127 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKTYGC 127 (354)
T ss_pred cCCCceEEEecCCCcEEEecccccce
Confidence 57899999999999999999987663
No 364
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.21 E-value=0.021 Score=34.59 Aligned_cols=31 Identities=16% Similarity=0.503 Sum_probs=28.1
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD 146 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~ 146 (432)
..|..++| +|...++|.++.+|.|.++.+..
T Consensus 12 ~~v~~~~w--~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 12 SRVSCMSW--CPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CcEEEEEE--CCCCCEEEEEECCCeEEEEECCC
Confidence 67999999 78999999999999999999843
No 365
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.21 E-value=0.94 Score=41.27 Aligned_cols=183 Identities=13% Similarity=0.058 Sum_probs=76.6
Q ss_pred eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee-ec-cc-eEEEEeecccccceeeEEe-
Q 014005 138 TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW-TE-NM-ATKIANVGNSVHARCQKVY- 213 (432)
Q Consensus 138 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~-~~-~v~i~d~~~~~~~~~~~~~- 213 (432)
.|.--|+.+|+.+.+..-. ..+.-+.|+|....++.-+. .+ +. .-+||-++.. +...+.+
T Consensus 169 ~i~~idl~tG~~~~v~~~~--------------~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d--g~~~~~v~ 232 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFEDT--------------DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD--GSNVKKVH 232 (386)
T ss_dssp EEEEEETTT--EEEEEEES--------------S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT--S---EESS
T ss_pred eEEEEECCCCceeEEEecC--------------ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC--CCcceeee
Confidence 3444566666655544322 34556677776555554433 11 22 2377877753 2222222
Q ss_pred ecCCCCCeeEEEeCCCCCEEEE-E--c---CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe
Q 014005 214 PHAHDFNINSISNNSDCETFVS-A--D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS 287 (432)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~l~~-~--~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 287 (432)
+......+..=-|.|+|..+.- + . +..|.-+|.. ++...... ...+....-.++|+ ++++-=+
T Consensus 233 ~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~-t~~~~~~~---------~~p~~~H~~ss~Dg-~L~vGDG 301 (386)
T PF14583_consen 233 RRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD-TGERRRLM---------EMPWCSHFMSSPDG-KLFVGDG 301 (386)
T ss_dssp ---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT-T--EEEEE---------EE-SEEEEEE-TTS-SEEEEEE
T ss_pred cCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC-CCCceEEE---------eCCceeeeEEcCCC-CEEEecC
Confidence 1122233444568899987664 2 2 3356666777 33322211 11124456667888 7766433
Q ss_pred CCC----------------eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC--Ce
Q 014005 288 SRG----------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MN 349 (432)
Q Consensus 288 ~dg----------------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~--~~ 349 (432)
.|. -|+++++..+.. ..+..|..+...... .....=-...|+|||++++-.++ |.
T Consensus 302 ~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~-----~~l~~h~~sw~v~~~--~~q~~hPhp~FSPDgk~VlF~Sd~~G~ 374 (386)
T PF14583_consen 302 GDAPVDVADAGGYKIENDPWIYLFDVEAGRF-----RKLARHDTSWKVLDG--DRQVTHPHPSFSPDGKWVLFRSDMEGP 374 (386)
T ss_dssp -------------------EEEEEETTTTEE-----EEEEE-------BTT--BSSTT----EE-TTSSEEEEEE-TTSS
T ss_pred CCCCccccccccceecCCcEEEEeccccCce-----eeeeeccCcceeecC--CCccCCCCCccCCCCCEEEEECCCCCC
Confidence 332 456677765543 333333110000000 00001135799999999886544 66
Q ss_pred EEEEe
Q 014005 350 LKVFR 354 (432)
Q Consensus 350 i~iwd 354 (432)
..||=
T Consensus 375 ~~vY~ 379 (386)
T PF14583_consen 375 PAVYL 379 (386)
T ss_dssp -EEEE
T ss_pred ccEEE
Confidence 66653
No 366
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.04 E-value=0.89 Score=39.40 Aligned_cols=181 Identities=13% Similarity=0.142 Sum_probs=110.4
Q ss_pred cccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCC
Q 014005 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 249 (432)
Q Consensus 171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~ 249 (432)
..+.++.|+|+.+.+.+... ...-.++ +.. .+..+++++...-.....+.+..++++.++- .++.+.++.++..
T Consensus 86 ~nvS~LTynp~~rtLFav~n--~p~~iVE-lt~--~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTN--KPAAIVE-LTK--EGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccceeeCCCcceEEEecC--CCceEEE-Eec--CCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 45889999999998887764 2222222 221 5566666643444556678888888888888 8999999988833
Q ss_pred CceeeEe--ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccc-cccCC-ccceee
Q 014005 250 DQCFNIV--DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA-ESHGS-KSFFTE 325 (432)
Q Consensus 250 ~~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~-~~~~~-~~~~~~ 325 (432)
...+..- .++.......+...-.++|+|.. ..|..+-+.+=+.||....+. ..+..|. ..+.- +..+
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~------~~l~~~~~~~~~~~~~~f-- 231 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSP------SSLSVHASLDPTADRDLF-- 231 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCC------cccccccccCcccccceE--
Confidence 2322211 11122222225668899999998 777778777777777766332 2233320 00110 0111
Q ss_pred eecceeEEEEcCC-CCEEEEeeC-CeEEEEec--CcceeEeecce
Q 014005 326 IIASISDIKFAND-GQHLLSRDY-MNLKVFRY--EPVMTLSFCGI 366 (432)
Q Consensus 326 ~~~~v~~~~~s~d-g~~l~s~~~-~~i~iwd~--~~~~~~~~~~~ 366 (432)
-..|+++.|.+. +.+|+-++. +.+.-.|. +++..+..+..
T Consensus 232 -~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g 275 (316)
T COG3204 232 -VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKG 275 (316)
T ss_pred -eeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccC
Confidence 346888999875 555665655 77777787 56666665553
No 367
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=1.3 Score=41.26 Aligned_cols=199 Identities=9% Similarity=0.056 Sum_probs=124.4
Q ss_pred EEEEEcCCCCE-EEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhc
Q 014005 36 SAIEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (432)
Q Consensus 36 ~~~~fsp~g~~-l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (432)
..+++++.+.. .++...++.|.+.|..+.+.. .....+ .
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~--------------------------~~~~vG--------------~ 116 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL--------------------------GSIPVG--------------L 116 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCccccee--------------------------eEeeec--------------c
Confidence 46778888774 445555678999996654422 001111 2
Q ss_pred ceeEEEEEEcCCCCEEEEEeC---CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 115 KINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
.-..+++ ++++..+..+.. ++++.+.|-.+.+.... ..... .+ ..++++|++..++... .
T Consensus 117 ~P~~~~~--~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~vG~------------~P-~~~a~~p~g~~vyv~~-~ 179 (381)
T COG3391 117 GPVGLAV--DPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IPVGN------------TP-TGVAVDPDGNKVYVTN-S 179 (381)
T ss_pred CCceEEE--CCCCCEEEEEecccCCceEEEEeCCCCeEEEE-EecCC------------Cc-ceEEECCCCCeEEEEe-c
Confidence 3456888 888887777644 68888888887764443 11111 12 7789999999777665 2
Q ss_pred ccceEEEEeecccccceeeE-Ee--ecCCCCCeeEEEeCCCCCEEEEE-c-C--CeEEEEeCCCCCceeeEeecCCCCcC
Q 014005 192 ENMATKIANVGNSVHARCQK-VY--PHAHDFNINSISNNSDCETFVSA-D-D--LRINLWNLEISDQCFNIVDMKPSNMD 264 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~-~~--~~~~~~~i~~~~~~~~~~~l~~~-~-d--~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (432)
.++.+.+.|.... ...+ .- ...-......+.++|++..+.+. . + +.+...|.. .+...... . ..
T Consensus 180 ~~~~v~vi~~~~~---~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~-~~~v~~~~-~----~~ 250 (381)
T COG3391 180 DDNTVSVIDTSGN---SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA-TGNVTATD-L----PV 250 (381)
T ss_pred CCCeEEEEeCCCc---ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCC-CceEEEec-c----cc
Confidence 3788889886632 2221 00 01233455678999999977776 3 2 588888888 44443321 0 01
Q ss_pred CCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEcccccc
Q 014005 265 DLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSAL 302 (432)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~ 302 (432)
+.. ....+..+|++ ..+.... ..+.+.+.|..+...
T Consensus 251 ~~~-~~~~v~~~p~g-~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 251 GSG-APRGVAVDPAG-KAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred ccC-CCCceeECCCC-CEEEEEecCCCeEEEEeCCCCce
Confidence 122 45678999999 7776664 448899999887664
No 368
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=0.033 Score=55.88 Aligned_cols=103 Identities=14% Similarity=0.178 Sum_probs=68.8
Q ss_pred CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccc
Q 014005 229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 307 (432)
Q Consensus 229 ~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 307 (432)
.+..++.| +.|.+-..|+..+-..+. .-..-.++|++++|+.+| ..++.|-.+|.|.+||+..+++ +
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~-------~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~----l 165 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLH-------QNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKI----L 165 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhh-------cCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcc----e
Confidence 44567777 888888888873211111 113445789999999999 9999999999999999998776 5
Q ss_pred eeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 308 ~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
+.+..|.. ....|-.+.+..++..+.+++. |. +|++
T Consensus 166 ~~i~e~~a----------p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 166 KVITEHGA----------PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeeeecCC----------ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 66665410 0123333444455556666655 54 7877
No 369
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.89 E-value=0.032 Score=45.93 Aligned_cols=105 Identities=12% Similarity=0.098 Sum_probs=65.1
Q ss_pred CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce-EEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccc
Q 014005 229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS 306 (432)
Q Consensus 229 ~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 306 (432)
-+..+++| .+|.|++|.....+.....+ ..-...| +.+.--.++ .+..+++.||.|+.|++.-++.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~-------~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~---- 136 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRV-------CSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKV---- 136 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhh-------hcccccceecccccccc-ceeEEeccCCceeeeccccCce----
Confidence 35578888 99999999887333332221 1112222 223333344 6888899999999999987665
Q ss_pred ceeecccccccCCccceeeee-cceeEEEEcCCCCEEEEe---eCCeEEEEecCcc
Q 014005 307 ARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSR---DYMNLKVFRYEPV 358 (432)
Q Consensus 307 ~~~~~~h~~~~~~~~~~~~~~-~~v~~~~~s~dg~~l~s~---~~~~i~iwd~~~~ 358 (432)
+.....| . .++..+..+..+++|+.+ .+..++.|++.++
T Consensus 137 ~g~~g~h-------------~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 137 LGYVGQH-------------NFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eeeeccc-------------cCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 3444444 2 455555566666777664 3377888888333
No 370
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.3 Score=45.56 Aligned_cols=69 Identities=12% Similarity=0.146 Sum_probs=49.9
Q ss_pred CCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (432)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~ 297 (432)
....|.+-..+| ++++| .+|.|++||.- ....... +++...+|..+..+.+| +++++ ..+..+-+.++
T Consensus 431 ~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~~AKTA-------lPgLG~~I~hVdvtadG-Kwil~-Tc~tyLlLi~t 499 (644)
T KOG2395|consen 431 NNFSCFATTESG-YIVVGSLKGDIRLYDRI-GRRAKTA-------LPGLGDAIKHVDVTADG-KWILA-TCKTYLLLIDT 499 (644)
T ss_pred cccceeeecCCc-eEEEeecCCcEEeehhh-hhhhhhc-------ccccCCceeeEEeeccC-cEEEE-ecccEEEEEEE
Confidence 456677777777 66666 99999999984 3332222 47888999999999999 76654 34667777776
Q ss_pred c
Q 014005 298 R 298 (432)
Q Consensus 298 ~ 298 (432)
.
T Consensus 500 ~ 500 (644)
T KOG2395|consen 500 L 500 (644)
T ss_pred e
Confidence 5
No 371
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.81 E-value=1.1 Score=38.62 Aligned_cols=199 Identities=8% Similarity=0.042 Sum_probs=104.0
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCC--eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
.-...+.| ..++.++-+.+.-| .|+.+|+.+++......+...- ....-...++.+..+.|.
T Consensus 45 aFTQGL~~--~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~--FgEGit~~~d~l~qLTWk------------ 108 (264)
T PF05096_consen 45 AFTQGLEF--LDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY--FGEGITILGDKLYQLTWK------------ 108 (264)
T ss_dssp -EEEEEEE--EETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEETTEEEEEESS------------
T ss_pred ccCccEEe--cCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc--cceeEEEECCEEEEEEec------------
Confidence 45567888 46787888877666 7999999998855443332110 000000001111122221
Q ss_pred ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (432)
++...+||.. +-+.+..+.- .+.=..++ .++..|+.+ ....++.+|.+ +-+..+.+.+... ...-..+
T Consensus 109 -~~~~f~yd~~---tl~~~~~~~y--~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~-~f~~~~~i~V~~~--g~pv~~L 177 (264)
T PF05096_consen 109 -EGTGFVYDPN---TLKKIGTFPY--PGEGWGLT--SDGKRLIMSDGSSRLYFLDPE-TFKEVRTIQVTDN--GRPVSNL 177 (264)
T ss_dssp -SSEEEEEETT---TTEEEEEEE---SSS--EEE--ECSSCEEEE-SSSEEEEE-TT-T-SEEEEEE-EET--TEE---E
T ss_pred -CCeEEEEccc---cceEEEEEec--CCcceEEE--cCCCEEEEECCccceEEECCc-ccceEEEEEEEEC--CEECCCc
Confidence 5677888887 5566666622 23444555 466777777 78899999987 4445554433211 1112346
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccccc---CCccceeeeecceeEEEEcCC-CCEEEEee
Q 014005 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH---GSKSFFTEIIASISDIKFAND-GQHLLSRD 346 (432)
Q Consensus 271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~---~~~~~~~~~~~~v~~~~~s~d-g~~l~s~~ 346 (432)
+.+.|- +| .+.|-.=....|...|..+|+. ...+.-....+ ..... .....-.+.+++.|. +++++||-
T Consensus 178 NELE~i-~G-~IyANVW~td~I~~Idp~tG~V----~~~iDls~L~~~~~~~~~~-~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 178 NELEYI-NG-KIYANVWQTDRIVRIDPETGKV----VGWIDLSGLRPEVGRDKSR-QPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEE-TT-EEEEEETTSSEEEEEETTT-BE----EEEEE-HHHHHHHTSTTST---TTS-EEEEEEETTTTEEEEEET
T ss_pred EeEEEE-cC-EEEEEeCCCCeEEEEeCCCCeE----EEEEEhhHhhhcccccccc-cccCCeeEeEeEeCCCCEEEEEeC
Confidence 777776 45 6666565677788888888875 23322110000 00000 000356789999886 45667775
No 372
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=1.7 Score=40.47 Aligned_cols=195 Identities=10% Similarity=0.075 Sum_probs=122.0
Q ss_pred EEEEEEcCCCCE-EEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee-ccce
Q 014005 118 RVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT-ENMA 195 (432)
Q Consensus 118 ~l~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~ 195 (432)
.+.. ++.+.. ++....++.|.+.|............. .....+++++++..++..... .++.
T Consensus 78 ~i~v--~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG--------------~~P~~~~~~~~~~~vYV~n~~~~~~~ 141 (381)
T COG3391 78 GVAV--NPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG--------------LGPVGLAVDPDGKYVYVANAGNGNNT 141 (381)
T ss_pred ceee--CCCCCeEEEecCCCCeEEEEcCcccceeeEeeec--------------cCCceEEECCCCCEEEEEecccCCce
Confidence 4566 667764 444455689999997665533332221 245678889998877776653 2567
Q ss_pred EEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEE
Q 014005 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (432)
Q Consensus 196 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 273 (432)
+.+.|.. +.+.......+. .+ ..++++|+|..+... .++.+.+.|.+ .....+ - .+.....-......+
T Consensus 142 vsvid~~---t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~-~~~v~~-~--~~~~~~~~~~~P~~i 212 (381)
T COG3391 142 VSVIDAA---TNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS-GNSVVR-G--SVGSLVGVGTGPAGI 212 (381)
T ss_pred EEEEeCC---CCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCC-Ccceec-c--ccccccccCCCCceE
Confidence 7777766 445555442232 23 789999999977776 69999999977 333221 0 000011222345778
Q ss_pred EEcCCCCcEEEEEe-CC--CeEEEEEcccccccccccee-ecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eC-
Q 014005 274 EFHPIYCNLLAYSS-SR--GFVRLVDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY- 347 (432)
Q Consensus 274 ~~~p~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~-~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~- 347 (432)
.++|++ +.+.... .+ +.+...|..++... .. ...- .. ....+..+|+|+++... ..
T Consensus 213 ~v~~~g-~~~yV~~~~~~~~~v~~id~~~~~v~----~~~~~~~------------~~-~~~~v~~~p~g~~~yv~~~~~ 274 (381)
T COG3391 213 AVDPDG-NRVYVANDGSGSNNVLKIDTATGNVT----ATDLPVG------------SG-APRGVAVDPAGKAAYVANSQG 274 (381)
T ss_pred EECCCC-CEEEEEeccCCCceEEEEeCCCceEE----Eeccccc------------cC-CCCceeECCCCCEEEEEecCC
Confidence 999999 5444433 33 58999998887642 21 1110 01 45678999999988876 33
Q ss_pred CeEEEEec
Q 014005 348 MNLKVFRY 355 (432)
Q Consensus 348 ~~i~iwd~ 355 (432)
+.+.+-|.
T Consensus 275 ~~V~vid~ 282 (381)
T COG3391 275 GTVSVIDG 282 (381)
T ss_pred CeEEEEeC
Confidence 88888888
No 373
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.74 E-value=0.25 Score=48.17 Aligned_cols=90 Identities=19% Similarity=0.386 Sum_probs=58.9
Q ss_pred cccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccccc
Q 014005 9 SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH 88 (432)
Q Consensus 9 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (432)
.....|.....+... -...+-+.-|.-++..++-+...++.|||...+...
T Consensus 14 ~~~~~w~~t~~~~T~--------i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE--------------------- 64 (631)
T PF12234_consen 14 SNKIEWLLTSTFETG--------ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLE--------------------- 64 (631)
T ss_pred CCeEEEEEEEEEecC--------CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEE---------------------
Confidence 456677777555421 113334444455555444444558999999876421
Q ss_pred CCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 014005 89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV 144 (432)
Q Consensus 89 p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~ 144 (432)
....+ ... +.|.++.|...|+++.+++.+..+.|.++.-
T Consensus 65 ----~~~~f-~~~------------~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 65 ----YEESF-SED------------DPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred ----Eeeee-cCC------------CceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 22233 222 7899999988899999999999999999864
No 374
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.58 E-value=0.71 Score=43.92 Aligned_cols=152 Identities=11% Similarity=0.098 Sum_probs=85.3
Q ss_pred ccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC----CC-EEEEEcCCeEEEEeC
Q 014005 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD----CE-TFVSADDLRINLWNL 246 (432)
Q Consensus 172 ~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~-~l~~~~d~~i~lwd~ 246 (432)
++..++|......+.+.-..-+|.+++-|.. .+ +.-..|..+.|.|- .. +||+-....|.+|.+
T Consensus 21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGds~------vi-----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGDSK------VI-----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred cccceEecCCCEEEEEeeeeeCCccccCCcc------Ee-----eccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 4556666554444444333224444433322 22 33457889999985 32 344448899999998
Q ss_pred CCCCc----ee--eEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCc
Q 014005 247 EISDQ----CF--NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK 320 (432)
Q Consensus 247 ~~~~~----~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~ 320 (432)
..... .+ ++-++. +...--...+.|||.. .+|+.-..+..-.+++.+....- ....+..
T Consensus 90 ~~s~~e~~K~l~sQtcEi~----e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~sr--VkaDi~~-------- 154 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIR----EPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSSR--VKADIKT-------- 154 (671)
T ss_pred ccCccccccceeeeeeecc----CCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCce--EEEeccC--------
Confidence 62111 00 111000 0111112467899998 77777666655556666633210 0233444
Q ss_pred cceeeeecceeEEEEcCCCCEEEEe--eCCeEEEEec
Q 014005 321 SFFTEIIASISDIKFANDGQHLLSR--DYMNLKVFRY 355 (432)
Q Consensus 321 ~~~~~~~~~v~~~~~s~dg~~l~s~--~~~~i~iwd~ 355 (432)
.+-|.+.+|.+||+.|+.+ +.=.-++||-
T Consensus 155 ------~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 155 ------SGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ------CceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 5789999999999988775 3345678887
No 375
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.51 E-value=1.7 Score=38.82 Aligned_cols=127 Identities=11% Similarity=0.049 Sum_probs=76.5
Q ss_pred CCeeEEEeCCCCCEEEEE-cC---------CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeC
Q 014005 219 FNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 288 (432)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~-~d---------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 288 (432)
...+.....|+|.+.++. .. ..-.+|.+.-.+...+.+ ..+-..-+.++||||+ +.|..+..
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~-------~~~~~~~NGla~SpDg-~tly~aDT 182 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL-------DDDLTIPNGLAFSPDG-KTLYVADT 182 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee-------cCcEEecCceEECCCC-CEEEEEeC
Confidence 567788899999877765 40 011334333113333332 4444556899999999 66666654
Q ss_pred -CCeEEEEEccc--cccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eC-CeEEEEec--CcceeE
Q 014005 289 -RGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKVFRY--EPVMTL 361 (432)
Q Consensus 289 -dg~i~iwd~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~-~~i~iwd~--~~~~~~ 361 (432)
.+.|.-|++.. +....+....+.. ...+..-.++...+|.+-+++ .. +.|..|+. +++..+
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~------------~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i 250 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFD------------EEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEI 250 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEcc------------CCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEE
Confidence 47888887752 2221110111111 013556678888999888654 33 49999999 788888
Q ss_pred eecc
Q 014005 362 SFCG 365 (432)
Q Consensus 362 ~~~~ 365 (432)
..+.
T Consensus 251 ~lP~ 254 (307)
T COG3386 251 KLPV 254 (307)
T ss_pred ECCC
Confidence 7774
No 376
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=0.067 Score=53.83 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=33.4
Q ss_pred CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCC
Q 014005 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNT 67 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~ 67 (432)
-..+|++++|+.+|..++.|-.+|.|.+||...++..
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l 165 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL 165 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcce
Confidence 4679999999999999999999999999999987644
No 377
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.29 E-value=0.076 Score=31.10 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=27.4
Q ss_pred cceEEEEEcCCCC--cEEEEEeCCCeEEEEEccc
Q 014005 268 EVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQ 299 (432)
Q Consensus 268 ~~v~~~~~~p~~~--~~l~~~~~dg~i~iwd~~~ 299 (432)
+.|+++.|+|... .+|+.+-..|.|.|+|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3589999998763 5899999999999999995
No 378
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.27 E-value=1.2 Score=43.55 Aligned_cols=117 Identities=16% Similarity=0.135 Sum_probs=70.8
Q ss_pred CCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEc--CCCCcEEEEEeCCCeEEEE
Q 014005 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLV 295 (432)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~dg~i~iw 295 (432)
..+.-+.-+.-++..++. +...+.|||.+ .+. ++.- ..+ ...+.|..+.|. |++ +.+++-|....|.++
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~-~~~-lE~~----~~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~ 101 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTR-SGV-LEYE----ESF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLY 101 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcC-CcE-EEEe----eee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEE
Confidence 345555556655555555 67789999999 343 2211 011 346779999885 677 777778888889888
Q ss_pred Ecc-----ccccccccceeecccccccCCccceeeee-cceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 296 DMR-----QSALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 296 d~~-----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~-~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
--. ........++.+.- ..+. .+|.+..|.++|.+++.++ +.+.|+|-
T Consensus 102 ~Q~R~dy~~~~p~w~~i~~i~i-----------~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 102 TQLRYDYTNKGPSWAPIRKIDI-----------SSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDK 155 (631)
T ss_pred EccchhhhcCCcccceeEEEEe-----------ecCCCCCccceeEecCCeEEEEeC-CEEEEECC
Confidence 532 11111111222211 1112 5789999999997666544 78888876
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.25 E-value=1.7 Score=42.91 Aligned_cols=165 Identities=10% Similarity=0.008 Sum_probs=85.1
Q ss_pred cccccccCCCCCcceecceee----ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC-CeEEEE
Q 014005 171 KNFMNEHNPPSFAHGYHLEWT----ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-LRINLW 244 (432)
Q Consensus 171 ~~i~~~~~~~~~~~~~~~~~~----~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d-~~i~lw 244 (432)
..+...+.++++..++..... .+..-.+|-.... +...... .+. ....-.|+|+|..+++. +. ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt-~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVL-EGH--SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--Ccceeee-cCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence 356678889998877655421 1333344433321 1122222 232 37788999999888877 33 233343
Q ss_pred eCCCCCceeeEeecCCCCcC-CCCcceEEEEEcCCCCcEEEEEeCCCeEEE---EEccccccccccceeecccccccCCc
Q 014005 245 NLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRL---VDMRQSALCDHSARILRDAAESHGSK 320 (432)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i---wd~~~~~~~~~~~~~~~~h~~~~~~~ 320 (432)
+-. ....+..+++...... .....|..+.||||| ..+|... +|.|.+ -....|..-......+..
T Consensus 425 ~~~-~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~-------- 493 (591)
T PRK13616 425 RDP-ATGQLARTPVDASAVASRVPGPISELQLSRDG-VRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGP-------- 493 (591)
T ss_pred ccC-CCceEEEEeccCchhhhccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEEEeCCCCceeecccEEeec--------
Confidence 333 1222222222111111 234569999999999 6666554 567766 333333210000011111
Q ss_pred cceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 321 SFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 321 ~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
.....+.++.|.+++.+++....+...+|.+
T Consensus 494 ----~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v 524 (591)
T PRK13616 494 ----GLGDTAVSLDWRTGDSLVVGRSDPEHPVWYV 524 (591)
T ss_pred ----ccCCccccceEecCCEEEEEecCCCCceEEE
Confidence 1123468899999998665443333445555
No 380
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.21 E-value=1.3 Score=38.24 Aligned_cols=148 Identities=9% Similarity=0.019 Sum_probs=81.6
Q ss_pred cccCCCCCcceecceeeccceEEEEeecccccceeeEEeec-CCCCCeeEEEeCCCCCEEEEE-c-----CCeEEEEeCC
Q 014005 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPH-AHDFNINSISNNSDCETFVSA-D-----DLRINLWNLE 247 (432)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~-~-----d~~i~lwd~~ 247 (432)
.++++|.....+.-..-+.....++|... .+...++.. .....--.=.|+|||++|... . -|.|-+||.+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~---~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNG---AQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCC---CcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 45555555444433332344566777663 222222201 001111123589999999876 3 3679999998
Q ss_pred CCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC------------------CeEEEEEcccccccccccee
Q 014005 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR------------------GFVRLVDMRQSALCDHSARI 309 (432)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------------------g~i~iwd~~~~~~~~~~~~~ 309 (432)
..-+.+- .+..|.-....+.+.+|| +.++.+... -++.+.|..+|.+..+ .+
T Consensus 149 ~~fqrvg-------E~~t~GiGpHev~lm~DG-rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liek--h~ 218 (366)
T COG3490 149 EGFQRVG-------EFSTHGIGPHEVTLMADG-RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEK--HT 218 (366)
T ss_pred cccceec-------ccccCCcCcceeEEecCC-cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhh--cc
Confidence 3333333 236676667889999999 777765421 1234445445544321 11
Q ss_pred ecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005 310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (432)
Q Consensus 310 ~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~ 346 (432)
+.. ..+..+|..++..+||+.++.+.
T Consensus 219 Lp~-----------~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 219 LPA-----------SLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred Cch-----------hhhhcceeeeeeCCCCcEEEEEE
Confidence 110 01246788899999998777643
No 381
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.17 E-value=2.1 Score=37.74 Aligned_cols=249 Identities=11% Similarity=0.077 Sum_probs=125.8
Q ss_pred CCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEE
Q 014005 42 KTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW 121 (432)
Q Consensus 42 p~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~ 121 (432)
..++.|+.|..+| +.+++....... .... +. ..|..+..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~---------------------------~~i~-~~------------~~I~ql~v 43 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKP---------------------------TRIL-KL------------SSITQLSV 43 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccc---------------------------eeEe-ec------------ceEEEEEE
Confidence 4578899998888 888888322211 1111 11 45888888
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEccCcceeeeee-cCCCCcccccccccccccccccc---CCCCCcceecceeeccceEE
Q 014005 122 CAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKE-MDHFPFVSSENTLLAEKNFMNEH---NPPSFAHGYHLEWTENMATK 197 (432)
Q Consensus 122 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~v~ 197 (432)
. ++-+.+++-+ |+.+.++++..-....... .......+..........+...+ -......++.+ . ...+.
T Consensus 44 l--~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~--kk~i~ 117 (275)
T PF00780_consen 44 L--PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-V--KKKIL 117 (275)
T ss_pred e--cccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-E--CCEEE
Confidence 4 4555555443 5999999987543222110 00000000000000011222222 11122222222 2 55888
Q ss_pred EEeecccc-cc-eeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCC-----cCCCCcce
Q 014005 198 IANVGNSV-HA-RCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN-----MDDLTEVI 270 (432)
Q Consensus 198 i~d~~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~-----~~~~~~~v 270 (432)
+|...... .. +..+.+ .-...+.+++|. ++.++.|..+...+.|++ ++.....++..... ......++
T Consensus 118 i~~~~~~~~~f~~~~ke~--~lp~~~~~i~~~--~~~i~v~~~~~f~~idl~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 192 (275)
T PF00780_consen 118 IYEWNDPRNSFSKLLKEI--SLPDPPSSIAFL--GNKICVGTSKGFYLIDLN-TGSPSELLDPSDSSSSFKSRNSSSKPL 192 (275)
T ss_pred EEEEECCcccccceeEEE--EcCCCcEEEEEe--CCEEEEEeCCceEEEecC-CCCceEEeCccCCcchhhhcccCCCce
Confidence 88877531 22 344444 345788899998 567888855557788998 45444443221111 01112234
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeE
Q 014005 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350 (432)
Q Consensus 271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i 350 (432)
..+.... + .+|++. |..-.+.|. .|+... ...++= ...+.++++. ..||+.-.++.|
T Consensus 193 ~~~~~~~-~-e~Ll~~--~~~g~fv~~-~G~~~r--~~~i~W--------------~~~p~~~~~~--~pyli~~~~~~i 249 (275)
T PF00780_consen 193 GIFQLSD-N-EFLLCY--DNIGVFVNK-NGEPSR--KSTIQW--------------SSAPQSVAYS--SPYLIAFSSNSI 249 (275)
T ss_pred EEEEeCC-c-eEEEEe--cceEEEEcC-CCCcCc--ccEEEc--------------CCchhEEEEE--CCEEEEECCCEE
Confidence 4444443 3 555543 333334443 344321 011111 2345566664 458888766789
Q ss_pred EEEec---CcceeEeecc
Q 014005 351 KVFRY---EPVMTLSFCG 365 (432)
Q Consensus 351 ~iwd~---~~~~~~~~~~ 365 (432)
.||++ +.++++..+.
T Consensus 250 EV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 250 EVRSLETGELVQTIPLPN 267 (275)
T ss_pred EEEECcCCcEEEEEECCC
Confidence 99999 6777776654
No 382
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.91 E-value=1.1 Score=42.60 Aligned_cols=153 Identities=9% Similarity=0.002 Sum_probs=82.6
Q ss_pred cceeEEEEEEcCCCCEEEEEe---CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc----cee
Q 014005 114 EKINRVRWCAAPNGSMFILST---NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA----HGY 186 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~ 186 (432)
.++..++| .||+.++-.. ..|.+++=| ...+..+ +-|..+.|.|-+. -+.
T Consensus 20 HPvhGlaW---TDGkqVvLT~L~l~~gE~kfGd-----s~viGqF---------------EhV~GlsW~P~~~~~~paLL 76 (671)
T PF15390_consen 20 HPVHGLAW---TDGKQVVLTDLQLHNGEPKFGD-----SKVIGQF---------------EHVHGLSWAPPCTADTPALL 76 (671)
T ss_pred ccccceEe---cCCCEEEEEeeeeeCCccccCC-----ccEeecc---------------ceeeeeeecCcccCCCCceE
Confidence 67899999 5776654442 234443322 1122222 3566777776532 222
Q ss_pred cceeeccceEEEEeeccccc--ceeeEEeecCCCC----CeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecC
Q 014005 187 HLEWTENMATKIANVGNSVH--ARCQKVYPHAHDF----NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~--~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~ 259 (432)
.... ...|.+|.+..... .+.+..-...... -...+.|+|....|++- ....-.+++++..+..++.-
T Consensus 77 AVQH--kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaD--- 151 (671)
T PF15390_consen 77 AVQH--KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKAD--- 151 (671)
T ss_pred EEec--cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEe---
Confidence 2223 67899999863322 2222111011111 12346799998888765 33333456776444444421
Q ss_pred CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (432)
Q Consensus 260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 298 (432)
-...+.|.|.+|.+||.+++++.+..=.-++||-.
T Consensus 152 ----i~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 152 ----IKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ----ccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 23456799999999994444444443345788744
No 383
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.88 E-value=4 Score=39.50 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=19.9
Q ss_pred CEEEEEeCCCeEEEEEccCcceee
Q 014005 128 SMFILSTNDKTIKLWKVRDQKVKK 151 (432)
Q Consensus 128 ~~l~s~~~d~~i~iwd~~~~~~~~ 151 (432)
..++.++.++.|.-+|.++++..-
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W 134 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVW 134 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEee
Confidence 578888889999999999988443
No 384
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.68 E-value=2.7 Score=36.57 Aligned_cols=169 Identities=12% Similarity=0.129 Sum_probs=101.5
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
..+.++.| +|+.+.|++......-.++=-..|++.....+.+- .....+.+.-.+.+.++-.. +
T Consensus 86 ~nvS~LTy--np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~------------~DpE~Ieyig~n~fvi~dER--~ 149 (316)
T COG3204 86 ANVSSLTY--NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF------------SDPETIEYIGGNQFVIVDER--D 149 (316)
T ss_pred ccccceee--CCCcceEEEecCCCceEEEEecCCceEEEeccccc------------CChhHeEEecCCEEEEEehh--c
Confidence 66999999 88998888887777666665566665444333321 23445666666777666655 6
Q ss_pred ceEEEEeecccccceeeE----Ee-e-cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecC-C-CCcC
Q 014005 194 MATKIANVGNSVHARCQK----VY-P-HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK-P-SNMD 264 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~----~~-~-~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~-~-~~~~ 264 (432)
+.+.+..+.......... .+ . .........++|.|..+.|..+ .-.-+.||.+......+..-... + ....
T Consensus 150 ~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~ 229 (316)
T COG3204 150 RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRD 229 (316)
T ss_pred ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccc
Confidence 677776665321111111 11 0 1114567789999999888888 66666776665222222110000 0 0001
Q ss_pred CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (432)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 298 (432)
-.-..|.++.|++....+|+-+.+++.+.-.|..
T Consensus 230 ~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 230 LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred eEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 1123578889997665788888888888888866
No 385
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.63 E-value=1.4 Score=44.28 Aligned_cols=92 Identities=16% Similarity=0.276 Sum_probs=52.1
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccc--cccc--cccceeecccccccCCccce-eeeecceeEEEEcCC---C
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ--SALC--DHSARILRDAAESHGSKSFF-TEIIASISDIKFAND---G 339 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~--~~~~--~~~~~~~~~h~~~~~~~~~~-~~~~~~v~~~~~s~d---g 339 (432)
-.|..+.++|+| .+||..|..|. .|..+.. |+.. ..-...... ...+....+| ......|..+.|+|. +
T Consensus 85 f~v~~i~~n~~g-~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~C-rt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 85 FEVHQISLNPTG-SLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINC-RTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred eeEEEEEECCCC-CEEEEEcCCcE-EEEEeccccCccccccCCCcceeE-EEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 468999999999 99998888764 4444431 1100 000000000 0000011111 122458899999997 3
Q ss_pred CEEEE-eeCCeEEEEec----CcceeEe
Q 014005 340 QHLLS-RDYMNLKVFRY----EPVMTLS 362 (432)
Q Consensus 340 ~~l~s-~~~~~i~iwd~----~~~~~~~ 362 (432)
..|+. .+|+++|+||+ .+.+.+.
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 56665 57799999999 4555554
No 386
>PHA02713 hypothetical protein; Provisional
Probab=94.35 E-value=2 Score=42.28 Aligned_cols=30 Identities=20% Similarity=0.475 Sum_probs=21.2
Q ss_pred CCCEEEEEeCCC-----eEEEEEccCcceeeeeec
Q 014005 126 NGSMFILSTNDK-----TIKLWKVRDQKVKKIKEM 155 (432)
Q Consensus 126 ~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~ 155 (432)
++...+.|+.++ .+..||..+..+..+..+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~m 385 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDM 385 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCC
Confidence 677778887653 488899988876655443
No 387
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.29 E-value=6.8 Score=39.62 Aligned_cols=34 Identities=29% Similarity=0.649 Sum_probs=27.1
Q ss_pred cceeEEEEEE-cCCCCEEEEEeCCCeEEEEEccCc
Q 014005 114 EKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQ 147 (432)
Q Consensus 114 ~~v~~l~~~~-s~~~~~l~s~~~d~~i~iwd~~~~ 147 (432)
..|..+.|+| +.++..|+.=..|+++++||+...
T Consensus 147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 6789999965 234678888888999999999754
No 388
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.22 E-value=0.2 Score=29.42 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=26.0
Q ss_pred CcEEEEEEcCC-C--CEEEEecccceEEEEEecC
Q 014005 33 DIVSAIEFDKT-G--DYLAVGDRGGRVILFETVG 63 (432)
Q Consensus 33 ~~V~~~~fsp~-g--~~l~t~~~dg~i~iw~~~~ 63 (432)
++|.++.|+|. + ++|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 37899999984 4 5888888889999999985
No 389
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.12 E-value=3.3 Score=35.31 Aligned_cols=140 Identities=9% Similarity=0.034 Sum_probs=86.6
Q ss_pred CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEE
Q 014005 44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (432)
Q Consensus 44 g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~ 123 (432)
..+++.|+..+.+.--|..+++.. ..+.+ +.+|.+-+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~-------------------------We~il---------------g~RiE~sa~v- 61 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLI-------------------------WEAIL---------------GVRIECSAIV- 61 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEE-------------------------eehhh---------------CceeeeeeEE-
Confidence 456788899999988888887642 00111 1344443332
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCCccccccccccccccc-cccCCCCCcceecceeeccceEEEEee
Q 014005 124 APNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFM-NEHNPPSFAHGYHLEWTENMATKIANV 201 (432)
Q Consensus 124 s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~v~i~d~ 201 (432)
-|++++.|+..|.+++.+.++|. ...+... +.|. .....+++..+..++. |+.....|.
T Consensus 62 --vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~---------------~~vk~~a~~d~~~glIycgsh--d~~~yalD~ 122 (354)
T KOG4649|consen 62 --VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL---------------ETVKVRAQCDFDGGLIYCGSH--DGNFYALDP 122 (354)
T ss_pred --ECCEEEEEEccCcEEEEEecchhheeeeeeh---------------hhhccceEEcCCCceEEEecC--CCcEEEecc
Confidence 37789999999999999999984 3222222 2222 2345678888999988 999999998
Q ss_pred cccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEEcCCeEEEEeCC
Q 014005 202 GNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSADDLRINLWNLE 247 (432)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~d~~i~lwd~~ 247 (432)
+ +..|+... +...+-..+-+..| ++...++...|.+.--..+
T Consensus 123 ~---~~~cVyks-kcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 123 K---TYGCVYKS-KCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred c---ccceEEec-ccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence 8 66777665 33333333445556 4443333355554443433
No 390
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.05 E-value=5.5 Score=37.61 Aligned_cols=113 Identities=12% Similarity=0.174 Sum_probs=65.6
Q ss_pred EEEEEEcCCCCEEEEE-eCCC----eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 118 RVRWCAAPNGSMFILS-TNDK----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 118 ~l~~~~s~~~~~l~s~-~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
...+ +|+++++|.+ +..| .+++.|+.+++...-. +. ......+.|.+++..++......
T Consensus 128 ~~~~--Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~-------------~~~~~~~~W~~d~~~~~y~~~~~ 191 (414)
T PF02897_consen 128 GFSV--SPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IE-------------NPKFSSVSWSDDGKGFFYTRFDE 191 (414)
T ss_dssp EEEE--TTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EE-------------EEESEEEEECTTSSEEEEEECST
T ss_pred eeeE--CCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-cc-------------ccccceEEEeCCCCEEEEEEeCc
Confidence 3445 9999998876 3333 5999999998633211 10 01122388888876655544322
Q ss_pred ---------cceEEEEeecccccceeeEEeecCCCCC-eeEEEeCCCCCEEEEE--c--C-CeEEEEeCC
Q 014005 193 ---------NMATKIANVGNSVHARCQKVYPHAHDFN-INSISNNSDCETFVSA--D--D-LRINLWNLE 247 (432)
Q Consensus 193 ---------~~~v~i~d~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~--~--d-~~i~lwd~~ 247 (432)
...|..|.+...... ....+....... ...+..++++++++.. . + ..+.+.|+.
T Consensus 192 ~~~~~~~~~~~~v~~~~~gt~~~~-d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 192 DQRTSDSGYPRQVYRHKLGTPQSE-DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp TTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred ccccccCCCCcEEEEEECCCChHh-CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 335777777644222 223442222233 6788899999998754 2 3 457777887
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.99 E-value=5.2 Score=37.15 Aligned_cols=105 Identities=10% Similarity=0.030 Sum_probs=52.1
Q ss_pred cceEEEEeecccccceeeEEeecCCCC-CeeEEEeC--CCCCEEEEE--cCCeEEEEeCCCCCc--eeeEeecCCCCcCC
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDF-NINSISNN--SDCETFVSA--DDLRINLWNLEISDQ--CFNIVDMKPSNMDD 265 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~-~i~~~~~~--~~~~~l~~~--~d~~i~lwd~~~~~~--~~~~~~~~~~~~~~ 265 (432)
...+.+||+. +.+.++++..+..+ ....+.|. |+..+-.+| -.++|..|-....+. .-+++++.+....+
T Consensus 221 G~~l~vWD~~---~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 221 GHSLHVWDWS---TRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp --EEEEEETT---TTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred cCeEEEEECC---CCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 4589999999 78888887444333 35567665 444443333 455665554421232 22333333321111
Q ss_pred ------------CCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccc
Q 014005 266 ------------LTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSA 301 (432)
Q Consensus 266 ------------~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~ 301 (432)
-..-|+.|.+|.|. ++|..+. .+|.|+.||+..-.
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDD-RFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SSTT
T ss_pred ccccccccccccCCCceEeEEEccCC-CEEEEEcccCCcEEEEecCCCC
Confidence 13558999999998 7776655 78999999998643
No 392
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.98 E-value=0.17 Score=41.91 Aligned_cols=104 Identities=14% Similarity=0.045 Sum_probs=57.6
Q ss_pred CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeE-EEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecC
Q 014005 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINS-ISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (432)
Q Consensus 182 ~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~ 259 (432)
...++.|+. +|.|.+|..... +.....+ ......|.+ +....++.+..++ .||.|+.|++. ..+.+-..
T Consensus 70 ~~~~~vG~~--dg~v~~~n~n~~--g~~~d~~-~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~-p~k~~g~~--- 140 (238)
T KOG2444|consen 70 SAKLMVGTS--DGAVYVFNWNLE--GAHSDRV-CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK-PNKVLGYV--- 140 (238)
T ss_pred CceEEeecc--cceEEEecCCcc--chHHHhh-hcccccceeccccccccceeEEeccCCceeeeccc-cCceeeee---
Confidence 345566666 888888877621 1111111 111222322 2223345566777 99999999998 55544433
Q ss_pred CCCcCCCC-cceEEEEEcCCCCcEEEEE--eCCCeEEEEEccc
Q 014005 260 PSNMDDLT-EVITSAEFHPIYCNLLAYS--SSRGFVRLVDMRQ 299 (432)
Q Consensus 260 ~~~~~~~~-~~v~~~~~~p~~~~~l~~~--~~dg~i~iwd~~~ 299 (432)
..|. .++.....+..+ ..++.+ |.|..++.|++..
T Consensus 141 ----g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 141 ----GQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ----ccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence 4444 444444444444 566666 6677777777653
No 393
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.93 E-value=3.9 Score=35.54 Aligned_cols=153 Identities=9% Similarity=0.017 Sum_probs=81.5
Q ss_pred ceeEEEEEEcCCCCEEEEEe---CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 115 KINRVRWCAAPNGSMFILST---NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
.+.+.++ +++++.++... ....+.++...... ..... ...+....|++++........
T Consensus 25 ~~~s~Av--S~dg~~~A~v~~~~~~~~L~~~~~~~~~-~~~~~---------------g~~l~~PS~d~~g~~W~v~~~- 85 (253)
T PF10647_consen 25 DVTSPAV--SPDGSRVAAVSEGDGGRSLYVGPAGGPV-RPVLT---------------GGSLTRPSWDPDGWVWTVDDG- 85 (253)
T ss_pred cccceEE--CCCCCeEEEEEEcCCCCEEEEEcCCCcc-eeecc---------------CCccccccccCCCCEEEEEcC-
Confidence 5778888 88998776655 33445555543322 12111 146777788888544433332
Q ss_pred ccceEEEEe-ecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE----cCCeEEEEeCCCCCce-eeEeecCCC-CcC
Q 014005 192 ENMATKIAN-VGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQC-FNIVDMKPS-NMD 264 (432)
Q Consensus 192 ~~~~v~i~d-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~d~~i~lwd~~~~~~~-~~~~~~~~~-~~~ 264 (432)
+...+++. ... ........-.......|.+++++|||..++.. .++.|.+=-+.....- -..+ ..+. ...
T Consensus 86 -~~~~~~~~~~~~-g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l-~~~~~~~~ 162 (253)
T PF10647_consen 86 -SGGVRVVRDSAS-GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL-TGPRRVAP 162 (253)
T ss_pred -CCceEEEEecCC-CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee-ccceEecc
Confidence 33444442 111 12222222101112289999999999988865 2677776654322211 1111 0111 112
Q ss_pred CCCcceEEEEEcCCCCcEEEEEeCCC
Q 014005 265 DLTEVITSAEFHPIYCNLLAYSSSRG 290 (432)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~~~~~dg 290 (432)
.....++.+.|.+++ .+++.+...+
T Consensus 163 ~~~~~v~~v~W~~~~-~L~V~~~~~~ 187 (253)
T PF10647_consen 163 PLLSDVTDVAWSDDS-TLVVLGRSAG 187 (253)
T ss_pred cccCcceeeeecCCC-EEEEEeCCCC
Confidence 334678999999998 7666655443
No 394
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.89 E-value=0.096 Score=51.80 Aligned_cols=172 Identities=10% Similarity=0.148 Sum_probs=95.3
Q ss_pred cCCCCCeeEEEeCCC-CCEEEEEcCCeEEEEeCCC-CCceeeEeecCCCCcCCCCcceEEEEEcC---CCCcEEEEEeCC
Q 014005 215 HAHDFNINSISNNSD-CETFVSADDLRINLWNLEI-SDQCFNIVDMKPSNMDDLTEVITSAEFHP---IYCNLLAYSSSR 289 (432)
Q Consensus 215 ~~~~~~i~~~~~~~~-~~~l~~~~d~~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~~l~~~~~d 289 (432)
++-.+.+-.++|-.. ...+. -.-|.+.+||++. .++....+.+++. ......+.-+.|.| +. -++.++-.+
T Consensus 129 kgf~G~v~dl~fah~~~pk~~-~~vg~lfVy~vd~l~G~iq~~l~v~~~--~p~gs~~~~V~wcp~~~~~-~~ic~~~~~ 204 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR-RLVGELFVYDVDVLQGEIQPQLEVTPI--TPYGSDPQLVSWCPIAVNK-VYICYGLKG 204 (1283)
T ss_pred hcCCCCcccccccccCChHHH-HHhhhhheeehHhhccccccceEEeec--CcCCCCcceeeeccccccc-ceeeeccCC
Confidence 445566666666421 11111 1346777888752 1222222222222 22233445566655 43 567777788
Q ss_pred CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec--------Cccee
Q 014005 290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY--------EPVMT 360 (432)
Q Consensus 290 g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~--------~~~~~ 360 (432)
+.|++.+..... ...+.+|...+....+|.+..-.+. ..||||..+|.+ .||.+++|.+ +++..
T Consensus 205 ~~i~lL~~~ra~-----~~l~rsHs~~~~d~a~~~~g~~~l~--~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhe 277 (1283)
T KOG1916|consen 205 GEIRLLNINRAL-----RSLFRSHSQRVTDMAFFAEGVLKLA--SLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHE 277 (1283)
T ss_pred CceeEeeechHH-----HHHHHhcCCCcccHHHHhhchhhhe--eeCCCCcEEEEeecCCccceeeeeeeccccHhhhhc
Confidence 899988876543 2556667433333333322222232 389999999985 6799999988 56666
Q ss_pred EeecceeeeehhhhhcccccccccceeeE--------EEEeeccc-ceeeeeccC
Q 014005 361 LSFCGIYVWILRQLQHSRFMSIYALSCVI--------YIITTLYL-INLSALSAG 406 (432)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~g~~~-~~i~~~~~~ 406 (432)
.+.|+. +.+.|.++-+..+. ++++++.- ..+++|...
T Consensus 278 wkphd~---------~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a 323 (1283)
T KOG1916|consen 278 WKPHDK---------HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEA 323 (1283)
T ss_pred cCCCCC---------CCceeeeeccccccCCccceeEEEEecccCCcceeEeecc
Confidence 666652 45666654333211 45666554 458888743
No 395
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.84 E-value=5.9 Score=37.28 Aligned_cols=55 Identities=11% Similarity=-0.020 Sum_probs=37.7
Q ss_pred CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCC
Q 014005 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 279 (432)
Q Consensus 218 ~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 279 (432)
.+.+..+++||+++++|.- .+|.+.+...+. .+.+..+++ ........+.|.-+.
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~------~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDT------DSKSPPKQMAWCGND 271 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeec------CcCCCCcEEEEECCC
Confidence 4589999999999999988 889999988773 344443322 122345566676543
No 396
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.81 E-value=4.6 Score=35.97 Aligned_cols=116 Identities=16% Similarity=0.108 Sum_probs=61.1
Q ss_pred cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEE
Q 014005 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (432)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 293 (432)
....+.+..+..+++|++++++ ......-||-... ..... .......|..+.|.|++ .+.+.+ ..|.|+
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~--~w~~~------~r~~~~riq~~gf~~~~-~lw~~~-~Gg~~~ 210 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT--TWQPH------NRNSSRRIQSMGFSPDG-NLWMLA-RGGQIQ 210 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S--S-EEE------E--SSS-EEEEEE-TTS--EEEEE-TTTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc--cceEE------ccCccceehhceecCCC-CEEEEe-CCcEEE
Confidence 4455778899999999999999 4555556776521 11111 03345789999999998 665544 888888
Q ss_pred EEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEE
Q 014005 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKV 352 (432)
Q Consensus 294 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~i 352 (432)
.=+.... ...+..+ ..+... ..-.+.+++|.++++..|+|..|.+..
T Consensus 211 ~s~~~~~------~~~w~~~-~~~~~~-----~~~~~ld~a~~~~~~~wa~gg~G~l~~ 257 (302)
T PF14870_consen 211 FSDDPDD------GETWSEP-IIPIKT-----NGYGILDLAYRPPNEIWAVGGSGTLLV 257 (302)
T ss_dssp EEE-TTE------EEEE----B-TTSS-------S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred EccCCCC------ccccccc-cCCccc-----CceeeEEEEecCCCCEEEEeCCccEEE
Confidence 8772211 1333321 111100 023588999999999999887665543
No 397
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.59 E-value=3.4 Score=38.31 Aligned_cols=154 Identities=8% Similarity=-0.046 Sum_probs=75.3
Q ss_pred cccccccCCCCCcceeccee----------eccceEEEEeec-ccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCC
Q 014005 171 KNFMNEHNPPSFAHGYHLEW----------TENMATKIANVG-NSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDL 239 (432)
Q Consensus 171 ~~i~~~~~~~~~~~~~~~~~----------~~~~~v~i~d~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~ 239 (432)
.....++|.+++...+.... .....|.+++-. ..........+ .......+.+++.+++ .+++....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf-a~~l~~p~Gi~~~~~G-lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF-AEELSMVTGLAVAVGG-VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe-ecCCCCccceeEecCC-EEEeCCCe
Confidence 34556777777776655321 001255555432 11122223344 3334456889999988 44443444
Q ss_pred eEEEEeCCCCC----ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC-------------------CeEEEEE
Q 014005 240 RINLWNLEISD----QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-------------------GFVRLVD 296 (432)
Q Consensus 240 ~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-------------------g~i~iwd 296 (432)
..++.|.+..+ +...++.--+.....+....+.++|.||| .+.++-+.. |.|.-+|
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 33444554211 11111110000001123457889999998 665544421 3344444
Q ss_pred ccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (432)
Q Consensus 297 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~ 345 (432)
..+++. ..+.. .......++|+++|+++++-
T Consensus 171 pdg~~~-----e~~a~-------------G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 171 PDGGKL-----RVVAH-------------GFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred cCCCeE-----EEEec-------------CcCCCccceECCCCCEEEEc
Confidence 443321 22211 12345789999999998874
No 398
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.41 E-value=3 Score=38.65 Aligned_cols=123 Identities=10% Similarity=0.054 Sum_probs=60.8
Q ss_pred eeEEEEEEcCCCCEEEEEe--------------------CCCeEEEEEccCcceeeeeecCCCCcccccccccccccccc
Q 014005 116 INRVRWCAAPNGSMFILST--------------------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (432)
Q Consensus 116 v~~l~~~~s~~~~~l~s~~--------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (432)
-+...| .|..+.++|+. ...++.+||+.+.+..+...+.... .-...
T Consensus 183 gYDfw~--qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g-----------~~pLE 249 (461)
T PF05694_consen 183 GYDFWY--QPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG-----------QMPLE 249 (461)
T ss_dssp ---EEE--ETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE-----------EEEEE
T ss_pred CCCeEE--cCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC-----------CceEE
Confidence 345666 56777788764 2468999999999877666554221 22333
Q ss_pred cc--CCCCCcceecceeeccceEEEEeecccccceeeEEee--c----C------------CCCCeeEEEeCCCCCEEEE
Q 014005 176 EH--NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYP--H----A------------HDFNINSISNNSDCETFVS 235 (432)
Q Consensus 176 ~~--~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~--~----~------------~~~~i~~~~~~~~~~~l~~ 235 (432)
+. ..|...+-.++........++|..+.. ..+..++.. . + -..-|+.|..|.|.++|..
T Consensus 250 vRflH~P~~~~gFvg~aLss~i~~~~k~~~g-~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYv 328 (461)
T PF05694_consen 250 VRFLHDPDANYGFVGCALSSSIWRFYKDDDG-EWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYV 328 (461)
T ss_dssp EEE-SSTT--EEEEEEE--EEEEEEEE-ETT-EEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEE
T ss_pred EEecCCCCccceEEEEeccceEEEEEEcCCC-CeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEE
Confidence 33 456666666655433333334332221 222222220 0 0 0345789999999999987
Q ss_pred E--cCCeEEEEeCCCCCce
Q 014005 236 A--DDLRINLWNLEISDQC 252 (432)
Q Consensus 236 ~--~d~~i~lwd~~~~~~~ 252 (432)
+ ..|.++.||+......
T Consensus 329 s~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 329 SNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp EETTTTEEEEEE-SSTTS-
T ss_pred EcccCCcEEEEecCCCCCC
Confidence 7 7999999999854443
No 399
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.29 E-value=7.1 Score=36.50 Aligned_cols=82 Identities=12% Similarity=-0.030 Sum_probs=48.8
Q ss_pred eeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec---CcceeEeecc--eeeeehhhhhccc------ccccccceeeEE
Q 014005 323 FTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY---EPVMTLSFCG--IYVWILRQLQHSR------FMSIYALSCVIY 390 (432)
Q Consensus 323 ~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~ 390 (432)
+.+....+.+++.+|++++.|+.+. |+|.++|+ ..++.++.-. ..-|+........ ........+.++
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 4444557889999999998888766 99999999 2233332211 1123322221111 000011224567
Q ss_pred EEeecccceeeeec
Q 014005 391 IITTLYLINLSALS 404 (432)
Q Consensus 391 ~~~g~~~~~i~~~~ 404 (432)
++-.-.-|.|.||.
T Consensus 383 vIyaprRg~lEvW~ 396 (415)
T PF14655_consen 383 VIYAPRRGILEVWS 396 (415)
T ss_pred EEEeccCCeEEEEe
Confidence 78888889999998
No 400
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.19 E-value=7.1 Score=36.19 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=13.5
Q ss_pred cEEEEEEcCCCCEEEEe
Q 014005 34 IVSAIEFDKTGDYLAVG 50 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~ 50 (432)
....|+|+++|+++++-
T Consensus 15 ~P~~ia~d~~G~l~V~e 31 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAE 31 (367)
T ss_pred CCceeeECCCCCEEEEe
Confidence 45678999999987764
No 401
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.11 E-value=4.7 Score=33.89 Aligned_cols=143 Identities=13% Similarity=0.082 Sum_probs=85.4
Q ss_pred cccccccccCCCCCcceecceeec--------cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cC
Q 014005 169 AEKNFMNEHNPPSFAHGYHLEWTE--------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD 238 (432)
Q Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~~~--------~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d 238 (432)
.+....+-..+|++++ ..|.... .+.++.|-... +.... ...-+--+.++|+.+.+.+... -+
T Consensus 107 kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h----~v~~i--~~~v~IsNgl~Wd~d~K~fY~iDsln 179 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGH----QVELI--WNCVGISNGLAWDSDAKKFYYIDSLN 179 (310)
T ss_pred HhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCC----Cceee--ehhccCCccccccccCcEEEEEccCc
Confidence 3466677778899988 4444322 33455554321 11111 1222345678899888877766 57
Q ss_pred CeEEEEeCCCC-Cc---eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccc
Q 014005 239 LRINLWNLEIS-DQ---CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA 314 (432)
Q Consensus 239 ~~i~lwd~~~~-~~---~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~ 314 (432)
-.|.-||.+.. +. .-.+++++...-..+. ..-.++.+-+| ++.++.-..++|...|..+|++ +..+.- |
T Consensus 180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~-~PDGm~ID~eG-~L~Va~~ng~~V~~~dp~tGK~----L~eikl-P 252 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESL-EPDGMTIDTEG-NLYVATFNGGTVQKVDPTTGKI----LLEIKL-P 252 (310)
T ss_pred eEEeeeecCCCcccccCcceeEEeccCCCcCCC-CCCcceEccCC-cEEEEEecCcEEEEECCCCCcE----EEEEEc-C
Confidence 77877885422 21 1223333332111221 12345556677 8888888899999999999997 566655 1
Q ss_pred cccCCccceeeeecceeEEEEcC
Q 014005 315 ESHGSKSFFTEIIASISDIKFAN 337 (432)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~s~ 337 (432)
...|++++|--
T Consensus 253 ------------t~qitsccFgG 263 (310)
T KOG4499|consen 253 ------------TPQITSCCFGG 263 (310)
T ss_pred ------------CCceEEEEecC
Confidence 46899999974
No 402
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.10 E-value=2.8 Score=41.27 Aligned_cols=151 Identities=9% Similarity=0.011 Sum_probs=72.3
Q ss_pred CCCCEEEEEeCCC-----eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec-c---ce
Q 014005 125 PNGSMFILSTNDK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE-N---MA 195 (432)
Q Consensus 125 ~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~---~~ 195 (432)
-+|...++|+.|| +|..||..+.++.....+.... ... -.-.-.+...+.|+... . ..
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r-----------~~~--gv~~~~g~iYi~GG~~~~~~~l~s 445 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR-----------SGH--GVAVLGGKLYIIGGGDGSSNCLNS 445 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcce-----------eee--EEEEECCEEEEEcCcCCCccccce
Confidence 3688888998885 4778888877765554332211 000 01112334444444321 2 46
Q ss_pred EEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCC-----eEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL-----RINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 196 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
+..||...+ ....+..+ ....... .++. -++.+.+.| .|+ ++..||.+ +++-...- .+......
T Consensus 446 ve~YDP~t~-~W~~~~~M-~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~-~~~W~~v~-----~m~~~rs~ 515 (571)
T KOG4441|consen 446 VECYDPETN-TWTLIAPM-NTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPE-TNQWTMVA-----PMTSPRSA 515 (571)
T ss_pred EEEEcCCCC-ceeecCCc-ccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCC-CCceeEcc-----cCcccccc
Confidence 777887643 22222222 1111111 1222 255566666 554 36677777 33322211 11112222
Q ss_pred eEEEEEcCCCCcEEEEEeCCC-----eEEEEEccccc
Q 014005 270 ITSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSA 301 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg-----~i~iwd~~~~~ 301 (432)
+-.+.+ ++ .+.+.|+.|| +|..||..+.+
T Consensus 516 ~g~~~~--~~-~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 516 VGVVVL--GG-KLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ccEEEE--CC-EEEEEecccCccccceeEEcCCCCCc
Confidence 222222 23 7888888776 46666655443
No 403
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.08 E-value=7.7 Score=36.33 Aligned_cols=52 Identities=13% Similarity=0.113 Sum_probs=34.7
Q ss_pred cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005 237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (432)
Q Consensus 237 ~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 298 (432)
.||.+.+++-+ ...+..+ +.+ .--.-.+.|.+.- ..|++++.+..+.-|...
T Consensus 153 ~DG~L~~feqe--~~~f~~~------lp~-~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 153 MDGSLSFFEQE--SFAFSRF------LPD-FLLPGPLCYCPRT-DSFVTASSSWTLECYKYQ 204 (418)
T ss_pred cCceEEEEeCC--cEEEEEE------cCC-CCCCcCeEEeecC-CEEEEecCceeEEEecHH
Confidence 79999999988 3332222 011 2223356888877 788899988888888754
No 404
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.08 E-value=6.9 Score=38.68 Aligned_cols=49 Identities=12% Similarity=0.071 Sum_probs=35.0
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCC
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLE 247 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~ 247 (432)
-.++|++.. ++.+... ....+.+-.+.|+.+...++...+|++++|++-
T Consensus 64 ~~I~If~~s----G~lL~~~-~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 64 PYIRIFNIS----GQLLGRI-LWKHGELIGMGWSDDEELICVQKDGTVHVYGLL 112 (829)
T ss_pred eeEEEEecc----ccchHHH-HhcCCCeeeecccCCceEEEEeccceEEEeecc
Confidence 357777774 4444443 233347889999988877766699999999987
No 405
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.04 E-value=0.16 Score=50.42 Aligned_cols=95 Identities=13% Similarity=0.058 Sum_probs=58.1
Q ss_pred cceEEEEeecccccceeeEE----eecCCCCCeeEEEeCC---CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005 193 NMATKIANVGNSVHARCQKV----YPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~----~~~~~~~~i~~~~~~~---~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (432)
-|.+.+|++..- .++.... ........+.-+.|.| +.-++..+ +++.+++..++...+ ..+ .
T Consensus 152 vg~lfVy~vd~l-~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~-------r 221 (1283)
T KOG1916|consen 152 VGELFVYDVDVL-QGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLF-------R 221 (1283)
T ss_pred hhhhheeehHhh-ccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--HHH-------H
Confidence 456678887631 2222111 1122233344455554 56677778 889998887773333 222 4
Q ss_pred CCCcceEEE-----------EEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005 265 DLTEVITSA-----------EFHPIYCNLLAYSSSRGFVRLVDMR 298 (432)
Q Consensus 265 ~~~~~v~~~-----------~~~p~~~~~l~~~~~dg~i~iwd~~ 298 (432)
+|..++..+ .++||| ..||.+..||.++.|.+.
T Consensus 222 sHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 222 SHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred hcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeeee
Confidence 465554443 368999 999999999999999865
No 406
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.03 E-value=5.5 Score=34.45 Aligned_cols=193 Identities=10% Similarity=0.027 Sum_probs=95.9
Q ss_pred CcEEEEEEcCCCCEEEEecccc--eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 33 DIVSAIEFDKTGDYLAVGDRGG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
.-...+.|..+|.++-+.+.-| .|+.+|+.+++... ...+...
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~-------------------------~~~l~~~---------- 89 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQ-------------------------SVPLPPR---------- 89 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEE-------------------------EEE-TTT----------
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEE-------------------------EEECCcc----------
Confidence 3466788877888777766555 68999998876320 0011000
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
--=-.+.. . +++.+...=.++...+||..+-+......+.... . .++ .++..++....
T Consensus 90 ---~FgEGit~--~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EG-----------W---GLt--~dg~~Li~SDG 147 (264)
T PF05096_consen 90 ---YFGEGITI--L-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEG-----------W---GLT--SDGKRLIMSDG 147 (264)
T ss_dssp -----EEEEEE--E-TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS----------------EEE--ECSSCEEEE-S
T ss_pred ---ccceeEEE--E-CCEEEEEEecCCeEEEEccccceEEEEEecCCcc-----------e---EEE--cCCCEEEEECC
Confidence 01112333 1 2223333335678888888765533333332111 1 122 33333333322
Q ss_pred eccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC------
Q 014005 191 TENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN------ 262 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~------ 262 (432)
...+.++|...-...+.+.... ...-..++-+.+- +|...|-. ....|...|.. ++.....+++....
T Consensus 148 --S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~-tG~V~~~iDls~L~~~~~~~ 223 (264)
T PF05096_consen 148 --SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPE-TGKVVGWIDLSGLRPEVGRD 223 (264)
T ss_dssp --SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETT-T-BEEEEEE-HHHHHHHTST
T ss_pred --ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCC-CCeEEEEEEhhHhhhccccc
Confidence 4467777765321222222210 1112356667765 56566655 67778888888 77777777543221
Q ss_pred --cCCCCcceEEEEEcCCCCcEEEEE
Q 014005 263 --MDDLTEVITSAEFHPIYCNLLAYS 286 (432)
Q Consensus 263 --~~~~~~~v~~~~~~p~~~~~l~~~ 286 (432)
........+.|+++|....+++||
T Consensus 224 ~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 224 KSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TST--TTS-EEEEEEETTTTEEEEEE
T ss_pred ccccccCCeeEeEeEeCCCCEEEEEe
Confidence 011245689999999885666655
No 407
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.93 E-value=5 Score=33.72 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=36.1
Q ss_pred EEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCC
Q 014005 223 SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 278 (432)
Q Consensus 223 ~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 278 (432)
.+++..+|.+.++. ..++|...|.. +++.+..+ .-....|++++|--.
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~-tGK~L~ei-------klPt~qitsccFgGk 264 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPT-TGKILLEI-------KLPTPQITSCCFGGK 264 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCC-CCcEEEEE-------EcCCCceEEEEecCC
Confidence 34556688888888 89999999999 67777766 333667999999643
No 408
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.91 E-value=1.1 Score=46.08 Aligned_cols=151 Identities=9% Similarity=-0.056 Sum_probs=93.0
Q ss_pred cccccccCCCCCcceecceeeccceEEEEeecccccce-----eeEEe--ecCCCCCeeEEEeCCCCCE-EEEE-cCCeE
Q 014005 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHAR-----CQKVY--PHAHDFNINSISNNSDCET-FVSA-DDLRI 241 (432)
Q Consensus 171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~-----~~~~~--~~~~~~~i~~~~~~~~~~~-l~~~-~d~~i 241 (432)
-.+..+...++....+......+..|..+|++.-.... +++.- .........++.|+|.-.. .++. .|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 34555556677666666555445588999987431111 11110 0122335567888887443 3444 89999
Q ss_pred EEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcc
Q 014005 242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS 321 (432)
Q Consensus 242 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~ 321 (432)
++..+......... .......++++|+|.| +.++.|-..|++.-|... .+. .+.+.+ +. ...
T Consensus 181 ~V~~~~~~~~~v~s--------~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~-lei----k~~ip~-Pp--~~e- 242 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTS--------FPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPS-LEI----KSEIPE-PP--VEE- 242 (1405)
T ss_pred hhhhhhhhhhhhcc--------cCcccceeeEEecccc-ceeeEecCCCeEEEeecc-cce----eecccC-CC--cCC-
Confidence 88877633332221 2345678999999999 999999999999988765 232 233322 11 110
Q ss_pred ceeeeecceeEEEEcCCCCEEEE
Q 014005 322 FFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 322 ~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
...|.+++|-..-.+|+.
T Consensus 243 -----~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 243 -----NYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred -----CcceeEEEEecceeEEEE
Confidence 367999999988888876
No 409
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.88 E-value=7.3 Score=35.48 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=39.3
Q ss_pred cceEEEEEcCCC------CcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005 268 EVITSAEFHPIY------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (432)
Q Consensus 268 ~~v~~~~~~p~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 341 (432)
..+..+.|.... ..+|++.-..+.|....+..+.........+.. ....+.++++.|||.+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------------~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGG-------------FGGRPRDVAQGPDGAL 319 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTT-------------SSS-EEEEEEETTSEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcccc-------------CCCCceEEEEcCCCeE
Confidence 557777776432 145665555667877777644321111122222 1347899999999988
Q ss_pred EEEee-CCeEE
Q 014005 342 LLSRD-YMNLK 351 (432)
Q Consensus 342 l~s~~-~~~i~ 351 (432)
.++-+ +|.|+
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 77754 46653
No 410
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.76 E-value=8.8 Score=37.90 Aligned_cols=156 Identities=8% Similarity=-0.032 Sum_probs=76.4
Q ss_pred eeEEEEEEcCCCCEEEEEeCC------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 116 INRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 116 v~~l~~~~s~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
-.+++. -++...++|+.| .++..||...+++.....++... ...-.-.-.+...+.|+
T Consensus 325 ~~~~~~---~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R-------------~~~~v~~l~g~iYavGG 388 (571)
T KOG4441|consen 325 RVGVAV---LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR-------------SDFGVAVLDGKLYAVGG 388 (571)
T ss_pred cccEEE---ECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc-------------ccceeEEECCEEEEEec
Confidence 344555 356788888888 46778888888766654443222 00001112334444455
Q ss_pred eec---cceEEEEeecccccceeeEEeecCCCCCeeEEE-eCCCCCEEEEE-cCC------eEEEEeCCCCCceeeEeec
Q 014005 190 WTE---NMATKIANVGNSVHARCQKVYPHAHDFNINSIS-NNSDCETFVSA-DDL------RINLWNLEISDQCFNIVDM 258 (432)
Q Consensus 190 ~~~---~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~-~d~------~i~lwd~~~~~~~~~~~~~ 258 (432)
... -..+..||.... ....+..+ ........ ..-+|...++| .++ ++..||.. ++.-...-
T Consensus 389 ~dg~~~l~svE~YDp~~~-~W~~va~m----~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~-t~~W~~~~-- 460 (571)
T KOG4441|consen 389 FDGEKSLNSVECYDPVTN-KWTPVAPM----LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPE-TNTWTLIA-- 460 (571)
T ss_pred cccccccccEEEecCCCC-cccccCCC----CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCC-CCceeecC--
Confidence 421 125777777643 22222211 11111221 12256666666 443 46677777 33322211
Q ss_pred CCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC-----eEEEEEccccc
Q 014005 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSA 301 (432)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----~i~iwd~~~~~ 301 (432)
.+..-..... ++.- ++ .+.+.||.|+ +|..||.++.+
T Consensus 461 ---~M~~~R~~~g-~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 461 ---PMNTRRSGFG-VAVL-NG-KIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred ---Ccccccccce-EEEE-CC-EEEEECCccCCCccceEEEEcCCCCc
Confidence 1111111111 2222 34 7888888776 37778887655
No 411
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.72 E-value=2.3 Score=39.60 Aligned_cols=80 Identities=16% Similarity=0.143 Sum_probs=52.8
Q ss_pred cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc----ceEEEEEcC------------
Q 014005 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE----VITSAEFHP------------ 277 (432)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~p------------ 277 (432)
......+.+++.+|++++.|+. .=|.|.++|+. .+..++.+ ++..+ ++....-..
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~-~~~vvrmW-------KGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVA-RGIVVRMW-------KGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECC-CChhhhhh-------ccCccceEEEEEeecccccccccccccCCC
Confidence 4455678899999999988888 78999999998 66666655 33221 111111100
Q ss_pred -CCC-cEEEEEeCCCeEEEEEcccccc
Q 014005 278 -IYC-NLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 278 -~~~-~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
... -+++.+-..|.|.||+++.|..
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQGPR 402 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCCCE
Confidence 000 2445567899999999998765
No 412
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.98 E-value=5.1 Score=36.47 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=36.2
Q ss_pred CeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCC
Q 014005 220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 278 (432)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 278 (432)
..++|+|.|+|+.+++-..|.|++++.+ .........+ +............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~-~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADL-PEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE--TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceeccc-ccccccccCCcccceeccc
Confidence 4678999999988776699999999944 2221121111 1222344557899999995
No 413
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.93 E-value=7.9 Score=33.67 Aligned_cols=155 Identities=10% Similarity=0.076 Sum_probs=89.9
Q ss_pred cEEEEEEcCCCCEEEEec---ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 34 IVSAIEFDKTGDYLAVGD---RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
.+.+.+.+++|+.+|... ....+.++....... ..+.+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~----------------------------~~~~g----------- 65 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR----------------------------PVLTG----------- 65 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce----------------------------eeccC-----------
Confidence 688999999999876655 233455554433211 01111
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEE-ccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK-VRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
..+..-+| ++++...+....+...+++. ...+....... .... ..+.|..+.++|++..++...
T Consensus 66 ---~~l~~PS~--d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v-~~~~---------~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 66 ---GSLTRPSW--DPDGWVWTVDDGSGGVRVVRDSASGTGEPVEV-DWPG---------LRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred ---Cccccccc--cCCCCEEEEEcCCCceEEEEecCCCcceeEEe-cccc---------cCCceEEEEECCCCcEEEEEE
Confidence 45677788 78887777766666666664 23333222111 1100 012789999999999887766
Q ss_pred eec-cceEEEEeecccccc------eeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEE
Q 014005 190 WTE-NMATKIANVGNSVHA------RCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINL 243 (432)
Q Consensus 190 ~~~-~~~v~i~d~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~l 243 (432)
... ++.+.+--+.....+ ...... ......+.+++|.+++.+++.+ .++.+..
T Consensus 131 ~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~-~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 131 EDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA-PPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred ecCCCCeEEEEEEEeCCCCCcceeccceEec-ccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 432 456666654432223 112222 2335688999999999887776 3443433
No 414
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.81 E-value=13 Score=35.99 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=17.3
Q ss_pred EEEEE-cCCeEEEEeCCCCCceeeE
Q 014005 232 TFVSA-DDLRINLWNLEISDQCFNI 255 (432)
Q Consensus 232 ~l~~~-~d~~i~lwd~~~~~~~~~~ 255 (432)
.++.+ .+|.+...|.+ +++.+..
T Consensus 303 ~V~~g~~~G~l~ald~~-tG~~~W~ 326 (488)
T cd00216 303 AIVHAPKNGFFYVLDRT-TGKLISA 326 (488)
T ss_pred EEEEECCCceEEEEECC-CCcEeeE
Confidence 46667 89999999999 6665543
No 415
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.54 E-value=7.4 Score=36.70 Aligned_cols=133 Identities=14% Similarity=0.144 Sum_probs=79.3
Q ss_pred eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-------EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-------TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 195 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
.+.-.|++ .++.+..+ .-|..- -+.+.|+.. .-++| ++..|.-.|.+..+..+...+.+. .. .
T Consensus 491 kLykmDIE---rGkvveeW-~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKd--Y~-t 561 (776)
T COG5167 491 KLYKMDIE---RGKVVEEW-DLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKD--YK-T 561 (776)
T ss_pred cceeeecc---cceeeeEe-ecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehh--cc-c
Confidence 44444555 56666666 444433 567777532 34456 777777778775554443321111 01 1
Q ss_pred CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~ 346 (432)
.....+..-... -++|.|+..|-|++||-- |... ...+.+ ....|..+..+.+|+++++-.
T Consensus 562 Kn~Fss~~tTes--GyIa~as~kGDirLyDRi-g~rA---KtalP~-------------lG~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 562 KNKFSSGMTTES--GYIAAASRKGDIRLYDRI-GKRA---KTALPG-------------LGDAIKHIDVTANGKHILATC 622 (776)
T ss_pred cccccccccccC--ceEEEecCCCceeeehhh-cchh---hhcCcc-------------cccceeeeEeecCCcEEEEee
Confidence 122333333333 589999999999999943 4432 122222 256899999999999887654
Q ss_pred CCeEEEEec
Q 014005 347 YMNLKVFRY 355 (432)
Q Consensus 347 ~~~i~iwd~ 355 (432)
...+.+-|+
T Consensus 623 k~yllL~d~ 631 (776)
T COG5167 623 KNYLLLTDV 631 (776)
T ss_pred cceEEEEec
Confidence 578888888
No 416
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.33 E-value=7.4 Score=36.14 Aligned_cols=74 Identities=11% Similarity=0.076 Sum_probs=49.6
Q ss_pred CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~ 346 (432)
.++|.++.|++|+ +.+|+--.++.|.+++....+........-+.. ...|.+..|+.+ +-+|.-.
T Consensus 66 ~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k-------------~~~IlGF~W~~s-~e~A~i~ 130 (657)
T KOG2377|consen 66 KGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK-------------NANILGFCWTSS-TEIAFIT 130 (657)
T ss_pred CCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHHHhccC-------------cceeEEEEEecC-eeEEEEe
Confidence 4589999999999 999999999999999974322110001111110 346888999876 5555554
Q ss_pred CCeEEEEec
Q 014005 347 YMNLKVFRY 355 (432)
Q Consensus 347 ~~~i~iwd~ 355 (432)
+.-+.+|.+
T Consensus 131 ~~G~e~y~v 139 (657)
T KOG2377|consen 131 DQGIEFYQV 139 (657)
T ss_pred cCCeEEEEE
Confidence 555677776
No 417
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=91.21 E-value=9.9 Score=33.42 Aligned_cols=119 Identities=9% Similarity=0.037 Sum_probs=67.1
Q ss_pred CeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeec-CCC-----CcCCCCcceEEEE--EcCCCCcEEEEEeCCCe
Q 014005 220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDM-KPS-----NMDDLTEVITSAE--FHPIYCNLLAYSSSRGF 291 (432)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~-~~~-----~~~~~~~~v~~~~--~~p~~~~~l~~~~~dg~ 291 (432)
.|..+...++-+.+++-.|+.++++++..-......-.. .+. ........+...+ -.+.+...|+++ ...+
T Consensus 37 ~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~ 115 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKK 115 (275)
T ss_pred eEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-ECCE
Confidence 388888888877777667799999998722111100000 000 0011222344444 122332445544 4558
Q ss_pred EEEEEcccccccc-ccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 292 VRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 292 i~iwd~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
|.+|......... +..+.+.- ...+..++|. +..|+.|..+...+.|+
T Consensus 116 i~i~~~~~~~~~f~~~~ke~~l--------------p~~~~~i~~~--~~~i~v~~~~~f~~idl 164 (275)
T PF00780_consen 116 ILIYEWNDPRNSFSKLLKEISL--------------PDPPSSIAFL--GNKICVGTSKGFYLIDL 164 (275)
T ss_pred EEEEEEECCcccccceeEEEEc--------------CCCcEEEEEe--CCEEEEEeCCceEEEec
Confidence 9999887642211 22445544 4678889998 55777775667888888
No 418
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.12 E-value=1.5 Score=37.04 Aligned_cols=74 Identities=9% Similarity=0.109 Sum_probs=50.0
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEccccccccccce---eecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEE
Q 014005 275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK 351 (432)
Q Consensus 275 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~ 351 (432)
+..++ ++|++-+.+|.+++||+.+++....... .+.. . +.... .....|..+.++.+|.-|++-++|..+
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~--~-~~~~~---~~~~~i~~~~lt~~G~PiV~lsng~~y 90 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNS--S-PVSDK---SSSPNITSCSLTSNGVPIVTLSNGDSY 90 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcc--c-ccccC---CCCCcEEEEEEcCCCCEEEEEeCCCEE
Confidence 44456 7899999999999999998775321100 0110 0 00000 125688999999999988887778899
Q ss_pred EEec
Q 014005 352 VFRY 355 (432)
Q Consensus 352 iwd~ 355 (432)
.|+.
T Consensus 91 ~y~~ 94 (219)
T PF07569_consen 91 SYSP 94 (219)
T ss_pred Eecc
Confidence 9998
No 419
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.92 E-value=13 Score=35.33 Aligned_cols=62 Identities=13% Similarity=0.058 Sum_probs=39.2
Q ss_pred CCCCeeEEEeCCCCCEEEEEc-CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCC
Q 014005 217 HDFNINSISNNSDCETFVSAD-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 279 (432)
Q Consensus 217 ~~~~i~~~~~~~~~~~l~~~~-d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 279 (432)
.-...+.|+|.|++++|++-. .|.|++++.. .........+..............|+++|+-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~-~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPE-TGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCC-CCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 345778999999998888775 7999999865 2222112111111011125668999999873
No 420
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=90.83 E-value=22 Score=36.65 Aligned_cols=70 Identities=9% Similarity=0.200 Sum_probs=43.3
Q ss_pred ceEEEEEcCCCCcEEEEEe----------CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005 269 VITSAEFHPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d 338 (432)
.|.++.|..|.+.++++|. ..|+|.+|.+..++. ++....| ...+.+.++.- -+
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~----L~~v~e~-----------~v~Gav~aL~~-fn 839 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS----LELVAET-----------VVKGAVYALVE-FN 839 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc----eeeeeee-----------eeccceeehhh-hC
Confidence 4666678887437777776 347888888876222 2333332 11345555442 25
Q ss_pred CCEEEEeeCCeEEEEec
Q 014005 339 GQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 339 g~~l~s~~~~~i~iwd~ 355 (432)
|++||+=+ ..|++|++
T Consensus 840 gkllA~In-~~vrLye~ 855 (1096)
T KOG1897|consen 840 GKLLAGIN-QSVRLYEW 855 (1096)
T ss_pred CeEEEecC-cEEEEEEc
Confidence 78887644 58999999
No 421
>PRK13684 Ycf48-like protein; Provisional
Probab=90.59 E-value=13 Score=33.84 Aligned_cols=157 Identities=9% Similarity=-0.046 Sum_probs=85.4
Q ss_pred cccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCC
Q 014005 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISD 250 (432)
Q Consensus 171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~ 250 (432)
+.+..+.+.+++.+++.+.. |.+..- .+. .++.-..........++++.+.++++.+++|..|.+.+=..+ .+
T Consensus 173 g~~~~i~~~~~g~~v~~g~~---G~i~~s-~~~--gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d-~G 245 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSR---GNFYST-WEP--GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPD-DL 245 (334)
T ss_pred ceEEEEEECCCCeEEEEeCC---ceEEEE-cCC--CCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCC-CC
Confidence 45666777777766655442 322211 110 111111111344567899999999998888877776532233 33
Q ss_pred ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecce
Q 014005 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (432)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v 330 (432)
........ +. ......+..+.+.|++ ..++ ++.+|.+. .....++. .+....+. ......
T Consensus 246 ~sW~~~~~-~~--~~~~~~l~~v~~~~~~-~~~~-~G~~G~v~-~S~d~G~t----W~~~~~~~----------~~~~~~ 305 (334)
T PRK13684 246 ESWSKPII-PE--ITNGYGYLDLAYRTPG-EIWA-GGGNGTLL-VSKDGGKT----WEKDPVGE----------EVPSNF 305 (334)
T ss_pred CccccccC-Cc--cccccceeeEEEcCCC-CEEE-EcCCCeEE-EeCCCCCC----CeECCcCC----------CCCcce
Confidence 33332100 00 1122357889999987 6555 55577554 33343332 12221100 002357
Q ss_pred eEEEEcCCCCEEEEeeCCeEEEEe
Q 014005 331 SDIKFANDGQHLLSRDYMNLKVFR 354 (432)
Q Consensus 331 ~~~~~s~dg~~l~s~~~~~i~iwd 354 (432)
..+.|..+++.+++|..|.|.-|+
T Consensus 306 ~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 306 YKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred EEEEEeCCCceEEECCCceEEEec
Confidence 788888888999999888887765
No 422
>PHA03098 kelch-like protein; Provisional
Probab=90.57 E-value=13 Score=36.44 Aligned_cols=28 Identities=18% Similarity=0.423 Sum_probs=19.0
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCcceeeee
Q 014005 126 NGSMFILSTND-----KTIKLWKVRDQKVKKIK 153 (432)
Q Consensus 126 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~ 153 (432)
++..++.|+.+ ..+..||..++++....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence 56677777765 35778888877765543
No 423
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.22 E-value=11 Score=39.31 Aligned_cols=152 Identities=5% Similarity=0.043 Sum_probs=79.0
Q ss_pred ceeEEEEEEcCCCCEEEE--EeCCCeEEEEEccCcceee---eeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 115 KINRVRWCAAPNGSMFIL--STNDKTIKLWKVRDQKVKK---IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s--~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
.+..+.. .+|+...++ .+.+-.|..||++.-.... ..-+..+. .......-..++.|+|.-.......
T Consensus 102 pi~~~v~--~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~-----ts~ek~vf~~~~~wnP~vp~n~av~ 174 (1405)
T KOG3630|consen 102 PIVIFVC--FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSA-----TSFEKPVFQLKNVWNPLVPLNSAVD 174 (1405)
T ss_pred cceEEEe--ccCCceEEEEEecCCceEEEEehHhhhhhhhhhcccccccc-----chhccccccccccccCCccchhhhh
Confidence 3444444 566554433 3445588999997532111 00000000 0111123445666766543222211
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
. .|+.|++..+... ......+ .-....++++|+|.|..++.| .+|++.-|... .+....+. .|...+ ..
T Consensus 175 l-~dlsl~V~~~~~~--~~~v~s~--p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip-~Pp~~e--~y 244 (1405)
T KOG3630|consen 175 L-SDLSLRVKSTKQL--AQNVTSF--PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIP-EPPVEE--NY 244 (1405)
T ss_pred c-cccchhhhhhhhh--hhhhccc--CcccceeeEEeccccceeeEecCCCeEEEeecc--cceeeccc-CCCcCC--Cc
Confidence 1 1566666554421 1111211 334578899999999999999 99999888766 33333221 111112 56
Q ss_pred ceEEEEEcCCCCcEEE
Q 014005 269 VITSAEFHPIYCNLLA 284 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~ 284 (432)
.|.+++|-... .+++
T Consensus 245 rvl~v~Wl~t~-eflv 259 (1405)
T KOG3630|consen 245 RVLSVTWLSTQ-EFLV 259 (1405)
T ss_pred ceeEEEEecce-eEEE
Confidence 79999997665 4444
No 424
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.76 E-value=7.6 Score=38.76 Aligned_cols=121 Identities=18% Similarity=0.164 Sum_probs=70.9
Q ss_pred CeeEEEeCC--CCCEEEEE-cCCeEEEEeCCC-------C----CceeeEeecCCCCcCCCCcceEEEEEc--CCCCcEE
Q 014005 220 NINSISNNS--DCETFVSA-DDLRINLWNLEI-------S----DQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLL 283 (432)
Q Consensus 220 ~i~~~~~~~--~~~~l~~~-~d~~i~lwd~~~-------~----~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l 283 (432)
.|+.|.+.. +...|+.+ +||.|.+|.++. . ........++|.-........++++++ ... +++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEE
Confidence 455555443 45567777 999999997630 0 000001122333223345578999998 776 899
Q ss_pred EEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC-----C-EEEEeeC-CeEEEEec
Q 014005 284 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-----Q-HLLSRDY-MNLKVFRY 355 (432)
Q Consensus 284 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg-----~-~l~s~~~-~~i~iwd~ 355 (432)
|+++....|.||-............... +...|.+++|-++. . +|++++= |.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~--------------~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQ--------------HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccc--------------cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9999888888887654211000001111 24678889988753 2 4544433 88888877
No 425
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.52 E-value=2.8 Score=35.48 Aligned_cols=85 Identities=13% Similarity=0.120 Sum_probs=52.5
Q ss_pred EcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEE
Q 014005 40 FDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV 119 (432)
Q Consensus 40 fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l 119 (432)
+..++++|++-+.+|.+++||+.+++...........+.. .. .... ... ..|..+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~----------~~-~~~~--~~~------------~~i~~~ 72 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNS----------SP-VSDK--SSS------------PNITSC 72 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcc----------cc-cccC--CCC------------CcEEEE
Confidence 4467899999999999999999998754110000000000 00 0000 122 678888
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEccCcceeee
Q 014005 120 RWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI 152 (432)
Q Consensus 120 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 152 (432)
.. +.+|.-+++-+ +|....|+..-+.+..+
T Consensus 73 ~l--t~~G~PiV~ls-ng~~y~y~~~L~~W~~v 102 (219)
T PF07569_consen 73 SL--TSNGVPIVTLS-NGDSYSYSPDLGCWIRV 102 (219)
T ss_pred EE--cCCCCEEEEEe-CCCEEEeccccceeEEe
Confidence 88 78887776655 57889999876665544
No 426
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.19 E-value=17 Score=33.02 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=70.8
Q ss_pred CeeEEEeCCCCCEEEEE-cC------CeEEEEeCCCCCceeeEeecCCC--------CcCCCCcceEEEEEcCCCCcEEE
Q 014005 220 NINSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPS--------NMDDLTEVITSAEFHPIYCNLLA 284 (432)
Q Consensus 220 ~i~~~~~~~~~~~l~~~-~d------~~i~lwd~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~p~~~~~l~ 284 (432)
..-+|++.+++.++++. .+ ..|..++.+ +.....+.+... .-...+...-+++++|+| +.|.
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~ 162 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLF 162 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCC-CEEE
Confidence 44567777788888887 67 778888876 555554433221 112345578999999999 7555
Q ss_pred EEeC-----CC--e-------EEEE--Eccc-cccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-ee
Q 014005 285 YSSS-----RG--F-------VRLV--DMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RD 346 (432)
Q Consensus 285 ~~~~-----dg--~-------i~iw--d~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~ 346 (432)
++.. |+ . ++++ |..+ ++. ...+.- +.++..... ....++.+.+-+++++|+. .+
T Consensus 163 ~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~----~~~~~y-~ld~~~~~~---~~~~isd~~al~d~~lLvLER~ 234 (326)
T PF13449_consen 163 AAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEP----VAEYAY-PLDPPPTAP---GDNGISDIAALPDGRLLVLERD 234 (326)
T ss_pred EEECccccCCCcccccccCceEEEEEecCCCCCcc----ceEEEE-eCCcccccc---CCCCceeEEEECCCcEEEEEcc
Confidence 5442 22 1 4444 4433 211 122221 111000000 1468899999999998886 12
Q ss_pred -----CCeEEEEec
Q 014005 347 -----YMNLKVFRY 355 (432)
Q Consensus 347 -----~~~i~iwd~ 355 (432)
...++|+.+
T Consensus 235 ~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 235 FSPGTGNYKRIYRV 248 (326)
T ss_pred CCCCccceEEEEEE
Confidence 256666666
No 427
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.00 E-value=4 Score=42.88 Aligned_cols=80 Identities=18% Similarity=0.246 Sum_probs=54.0
Q ss_pred CCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCC---C---ceeeEeecC--------C--CCcC-CCCcceEEEEEcCCC
Q 014005 217 HDFNINSISNNSDCETFVSADDLRINLWNLEIS---D---QCFNIVDMK--------P--SNMD-DLTEVITSAEFHPIY 279 (432)
Q Consensus 217 ~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~---~---~~~~~~~~~--------~--~~~~-~~~~~v~~~~~~p~~ 279 (432)
....|+++....+|+.+.+|.||. +|.+-.. + +..+.+.+. | .++. .+..+|..+..+..-
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 355788999889999999996664 4444210 0 100111000 0 1223 566789999999886
Q ss_pred CcEEEEEeCCCeEEEEEccc
Q 014005 280 CNLLAYSSSRGFVRLVDMRQ 299 (432)
Q Consensus 280 ~~~l~~~~~dg~i~iwd~~~ 299 (432)
+++.+-+..|+|.+||+..
T Consensus 255 -~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 -NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred -ceeeeeccCceEEEEEccC
Confidence 8999999999999999986
No 428
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.88 E-value=17 Score=32.52 Aligned_cols=157 Identities=11% Similarity=-0.012 Sum_probs=80.1
Q ss_pred cccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCC
Q 014005 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISD 250 (432)
Q Consensus 171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~ 250 (432)
+.+..+..++++.+++.+.. .....-|+.... ...+.. .....+|.++.|.|++...+.+..|.|+.=+..
T Consensus 145 gs~~~~~r~~dG~~vavs~~--G~~~~s~~~G~~-~w~~~~---r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~--- 215 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSR--GNFYSSWDPGQT-TWQPHN---RNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDP--- 215 (302)
T ss_dssp --EEEEEE-TTS-EEEEETT--SSEEEEE-TT-S-S-EEEE-----SSS-EEEEEE-TTS-EEEEETTTEEEEEE-T---
T ss_pred ceeEeEEECCCCcEEEEECc--ccEEEEecCCCc-cceEEc---cCccceehhceecCCCCEEEEeCCcEEEEccCC---
Confidence 56777778899998888765 445555654321 112211 345678999999999887777789998887722
Q ss_pred ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecce
Q 014005 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (432)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v 330 (432)
.....+...........-.+..++|.+++ .+.|+|+.. .+ +.....|+- -+.... . .+ .....
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg~G-~l-~~S~DgGkt----W~~~~~-~-~~--------~~~n~ 278 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRPPN-EIWAVGGSG-TL-LVSTDGGKT----WQKDRV-G-EN--------VPSNL 278 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESSSS--EEEEESTT--E-EEESSTTSS-----EE-GG-G-TT--------SSS--
T ss_pred CCccccccccCCcccCceeeEEEEecCCC-CEEEEeCCc-cE-EEeCCCCcc----ceECcc-c-cC--------CCCce
Confidence 11222211001111223348899999987 777766644 33 333344443 122211 0 00 12467
Q ss_pred eEEEEcCCCCEEEEeeCCeEEEE
Q 014005 331 SDIKFANDGQHLLSRDYMNLKVF 353 (432)
Q Consensus 331 ~~~~~s~dg~~l~s~~~~~i~iw 353 (432)
..+.|.++.+-++.|.+|.|-=|
T Consensus 279 ~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 279 YRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp -EEEEEETTEEEEE-STTEEEEE
T ss_pred EEEEEcCCCceEEECCCcEEEEe
Confidence 88999888888999988877544
No 429
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.74 E-value=4.1 Score=33.03 Aligned_cols=31 Identities=29% Similarity=0.241 Sum_probs=26.3
Q ss_pred ceEEEEEcCCC-----CcEEEEEeCCCeEEEEEccc
Q 014005 269 VITSAEFHPIY-----CNLLAYSSSRGFVRLVDMRQ 299 (432)
Q Consensus 269 ~v~~~~~~p~~-----~~~l~~~~~dg~i~iwd~~~ 299 (432)
.+..++|||.| ..+||+.+.++.+.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78999999965 25899999999999998764
No 430
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=88.57 E-value=17 Score=36.15 Aligned_cols=35 Identities=20% Similarity=0.452 Sum_probs=29.8
Q ss_pred CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCc
Q 014005 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK 65 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~ 65 (432)
....++++.-+|.|+-++.+..||+|++|+.....
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 34568889999999999999999999999986543
No 431
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.54 E-value=11 Score=35.11 Aligned_cols=106 Identities=10% Similarity=0.125 Sum_probs=69.0
Q ss_pred cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEE
Q 014005 215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (432)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 293 (432)
....+.|.++.|++|.+.+|+- .+++|.+++.. +++....... +.+..+..|....|+.+ .-+|.-...| +.
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~-~d~~~l~~~~---~ck~k~~~IlGF~W~~s--~e~A~i~~~G-~e 135 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFI-PDNSQLEYTQ---ECKTKNANILGFCWTSS--TEIAFITDQG-IE 135 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecC-CCchhhHHHH---HhccCcceeEEEEEecC--eeEEEEecCC-eE
Confidence 3456799999999999999999 99999999986 3433322211 11333456889999865 3455555443 66
Q ss_pred EEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (432)
Q Consensus 294 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 343 (432)
+|.....+.. ++..+.| ...|.--.|.++-+.+.
T Consensus 136 ~y~v~pekrs---lRlVks~-------------~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 136 FYQVLPEKRS---LRLVKSH-------------NLNVNWYMYCPETAVIL 169 (657)
T ss_pred EEEEchhhhh---hhhhhhc-------------ccCccEEEEccccceEe
Confidence 7765543322 3555554 56677778888776544
No 432
>PRK10115 protease 2; Provisional
Probab=87.67 E-value=35 Score=34.76 Aligned_cols=197 Identities=8% Similarity=0.033 Sum_probs=96.8
Q ss_pred cEEEEEEcCCCCEEEEec-----ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 34 IVSAIEFDKTGDYLAVGD-----RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
.+..+.++|+|++|+.+. ....|++.|+.+++.+. ..+.
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~--------------------------~~i~---------- 171 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP--------------------------ELLD---------- 171 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC--------------------------cccc----------
Confidence 467788999999887643 23368888887765220 0110
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCC------CeEEEEEccCc--ceeeeeecCCCCccccccccccccccccccCCC
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTND------KTIKLWKVRDQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d------~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 180 (432)
..-..++| .+|++.|+.+..+ ..|..+++.++ +-..+....... .......+.
T Consensus 172 -----~~~~~~~w--~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~------------~~~~~~~s~ 232 (686)
T PRK10115 172 -----NVEPSFVW--ANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDT------------FYVSLHKTT 232 (686)
T ss_pred -----CcceEEEE--eeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCC------------EEEEEEEcC
Confidence 11145899 7788776665432 36777888777 322332211111 111223344
Q ss_pred CCcceecceeec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-CC--eEEEEeCCCCCceeeE
Q 014005 181 SFAHGYHLEWTE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DL--RINLWNLEISDQCFNI 255 (432)
Q Consensus 181 ~~~~~~~~~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~--~i~lwd~~~~~~~~~~ 255 (432)
++.+++...... ++.+.+++.... .......+ ....+....+. +..+.+++.. . .. .|...++...+ ..+.
T Consensus 233 d~~~l~i~~~~~~~~~~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~-~~~~ 308 (686)
T PRK10115 233 SKHYVVIHLASATTSEVLLLDAELA-DAEPFVFL-PRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQ-QWEE 308 (686)
T ss_pred CCCEEEEEEECCccccEEEEECcCC-CCCceEEE-ECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcc-cCeE
Confidence 666665443322 567888885421 12222222 11122222222 2233333333 2 22 33333443111 1122
Q ss_pred eecCCCCcCCC--CcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005 256 VDMKPSNMDDL--TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (432)
Q Consensus 256 ~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 298 (432)
+ -.+ ...+..+.+..+ .++++...+|.-+++-+.
T Consensus 309 l-------~~~~~~~~i~~~~~~~~--~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 309 L-------IPPRENIMLEGFTLFTD--WLVVEERQRGLTSLRQIN 344 (686)
T ss_pred E-------ECCCCCCEEEEEEEECC--EEEEEEEeCCEEEEEEEc
Confidence 2 222 236778888733 677777777765555443
No 433
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.07 E-value=12 Score=35.58 Aligned_cols=83 Identities=10% Similarity=0.137 Sum_probs=46.6
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccc------ccccCCccceeee-ecceeEEEEcCCC-
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA------AESHGSKSFFTEI-IASISDIKFANDG- 339 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h------~~~~~~~~~~~~~-~~~v~~~~~s~dg- 339 (432)
-.|..+..++.| ..++-+|.+|.+.++=.+.... -..++.- ..-+....+|... .-.+..++|+|+.
T Consensus 104 feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~----~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~ 178 (741)
T KOG4460|consen 104 FEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGK----NSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSI 178 (741)
T ss_pred EEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCc----cceecCCCceEEEEeecccceeeccCCceeeeeccccCCcc
Confidence 357788899999 8888899999766553221110 0111100 0000011111111 1246678999975
Q ss_pred ---CEEEEeeCCeEEEEec
Q 014005 340 ---QHLLSRDYMNLKVFRY 355 (432)
Q Consensus 340 ---~~l~s~~~~~i~iwd~ 355 (432)
.+++-.+|+.+|+||+
T Consensus 179 ~D~hL~iL~sdnviRiy~l 197 (741)
T KOG4460|consen 179 LDPHLVLLTSDNVIRIYSL 197 (741)
T ss_pred CCceEEEEecCcEEEEEec
Confidence 3444567799999999
No 434
>PHA02790 Kelch-like protein; Provisional
Probab=86.94 E-value=31 Score=33.39 Aligned_cols=30 Identities=10% Similarity=0.333 Sum_probs=19.5
Q ss_pred CCCEEEEEeCC--CeEEEEEccCcceeeeeec
Q 014005 126 NGSMFILSTND--KTIKLWKVRDQKVKKIKEM 155 (432)
Q Consensus 126 ~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~ 155 (432)
++...+.|+.+ ..+..||..++++.....+
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 67777777753 4578888877665554433
No 435
>PHA02713 hypothetical protein; Provisional
Probab=86.62 E-value=7.6 Score=38.31 Aligned_cols=94 Identities=4% Similarity=-0.117 Sum_probs=44.6
Q ss_pred eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec----cceEEEEeecccccceeeEEe
Q 014005 138 TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE----NMATKIANVGNSVHARCQKVY 213 (432)
Q Consensus 138 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~v~i~d~~~~~~~~~~~~~ 213 (432)
.+..||..+.++..+..+.... .......-++...+.|+... ...+..||.+.......+..+
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r-------------~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m 499 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGT-------------IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT 499 (557)
T ss_pred eEEEECCCCCeEeecCCCCccc-------------ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc
Confidence 5778888887766554432211 11111112233333333311 124567887741133333333
Q ss_pred ecCCCCCeeEEEeCCCCCEEEEE-cCC--eEEEEeCC
Q 014005 214 PHAHDFNINSISNNSDCETFVSA-DDL--RINLWNLE 247 (432)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~l~~~-~d~--~i~lwd~~ 247 (432)
.........+.+ ++.+.++| .++ .+..||..
T Consensus 500 -~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 500 -ESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred -CcccccceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence 222222223333 66777777 666 66777776
No 436
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=86.57 E-value=8.9 Score=26.99 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=28.6
Q ss_pred EeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005 286 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (432)
Q Consensus 286 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~ 347 (432)
+..+|++.-||..+++. ...+.+ -.-.+.+++++|+.+|+.+..
T Consensus 33 ~~~~GRll~ydp~t~~~----~vl~~~--------------L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKET----TVLLDG--------------LYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp T---EEEEEEETTTTEE----EEEEEE--------------ESSEEEEEE-TTSSEEEEEEG
T ss_pred CCCCcCEEEEECCCCeE----EEehhC--------------CCccCeEEEcCCCCEEEEEec
Confidence 34567888899888764 223333 456789999999998887643
No 437
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.16 E-value=19 Score=30.10 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=44.0
Q ss_pred CCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCc---eeeEeecCCCCcCCCCc-ceEEEEEcCCCCcEEEEEeCCCeE
Q 014005 217 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQ---CFNIVDMKPSNMDDLTE-VITSAEFHPIYCNLLAYSSSRGFV 292 (432)
Q Consensus 217 ~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~~~dg~i 292 (432)
-...+.+++-.|-...|+.|.++++.+|.+..... .+..++....-+.-|.+ .+..+++. + .++|..+ +-.+
T Consensus 133 l~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic--~-~yiA~~s-~~ev 208 (215)
T PF14761_consen 133 LSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAIC--E-GYIAVMS-DLEV 208 (215)
T ss_pred CCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEEEE--e-eEEEEec-CCEE
Confidence 35578889888876678888888999998872111 11222222111122222 24566665 3 5677655 4466
Q ss_pred EEEEc
Q 014005 293 RLVDM 297 (432)
Q Consensus 293 ~iwd~ 297 (432)
+++.+
T Consensus 209 ~Vlkl 213 (215)
T PF14761_consen 209 LVLKL 213 (215)
T ss_pred EEEEE
Confidence 66654
No 438
>PRK10115 protease 2; Provisional
Probab=85.46 E-value=29 Score=35.28 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=62.4
Q ss_pred CeeEEEeCCCCCEEEEE-c-CC----eEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC----
Q 014005 220 NINSISNNSDCETFVSA-D-DL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---- 289 (432)
Q Consensus 220 ~i~~~~~~~~~~~l~~~-~-d~----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---- 289 (432)
.+..+.++|++++|+.+ + +| .|++-|+. ++..+.. .+.+- -..++|.+|+ +.|+....+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~-tg~~l~~------~i~~~---~~~~~w~~D~-~~~~y~~~~~~~~ 196 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE-TGNWYPE------LLDNV---EPSFVWANDS-WTFYYVRKHPVTL 196 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECC-CCCCCCc------cccCc---ceEEEEeeCC-CEEEEEEecCCCC
Confidence 46678899999999977 3 22 57778887 4432211 11111 1469999998 656555432
Q ss_pred --CeEEEEEccccccccccceeecccccccCCccceeeeeccee-EEEEcCCCCEEEEe----eCCeEEEEec
Q 014005 290 --GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS-DIKFANDGQHLLSR----DYMNLKVFRY 355 (432)
Q Consensus 290 --g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~-~~~~s~dg~~l~s~----~~~~i~iwd~ 355 (432)
..|+.+++.++.... ...++.. ..... ....+.|+++++.. .++.+.+++.
T Consensus 197 ~~~~v~~h~lgt~~~~d--~lv~~e~-------------~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 197 LPYQVWRHTIGTPASQD--ELVYEEK-------------DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCEEEEEECCCChhHC--eEEEeeC-------------CCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 357777777663111 2344331 11222 33345588876652 2267888884
No 439
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.21 E-value=3.3 Score=38.26 Aligned_cols=57 Identities=11% Similarity=0.073 Sum_probs=39.6
Q ss_pred cEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 281 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
+-+++-+..|++.++...+.+. -.++. .-..+.-+++||++.+|++-+.|.++++.+
T Consensus 329 kgF~~l~~~G~L~~f~st~~~~-----lL~~~-------------~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l 385 (733)
T COG4590 329 KGFYSLYRNGTLQSFYSTSEKL-----LLFER-------------AYQAPQLVAMSPNQAYLLSEDQGKIRLAQL 385 (733)
T ss_pred ceEEEEcCCCceeeeecccCcc-----eehhh-------------hhcCcceeeeCcccchheeecCCceEEEEe
Confidence 4566667777777776554332 11111 023567789999999999987799999998
No 440
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=85.16 E-value=50 Score=34.19 Aligned_cols=109 Identities=18% Similarity=0.206 Sum_probs=68.1
Q ss_pred CeeEEEeCCC-CCEEEEE-c----------CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe
Q 014005 220 NINSISNNSD-CETFVSA-D----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS 287 (432)
Q Consensus 220 ~i~~~~~~~~-~~~l~~~-~----------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 287 (432)
.|.+..|..| +.++++| . .|.|.++... ....++.+ .-..-.+.+.++..- +| +++| +
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~-e~~~L~~v-----~e~~v~Gav~aL~~f-ng-kllA--~ 845 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFE-ELNSLELV-----AETVVKGAVYALVEF-NG-KLLA--G 845 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEe-cCCceeee-----eeeeeccceeehhhh-CC-eEEE--e
Confidence 3445557776 6666665 2 4778888887 34444433 001123344444332 23 5554 5
Q ss_pred CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 288 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 288 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
-...|++|+..+.+. ++.-..| ..++..+...-.|..++.|+- +.+.+-..
T Consensus 846 In~~vrLye~t~~~e----Lr~e~~~-------------~~~~~aL~l~v~gdeI~VgDlm~Sitll~y 897 (1096)
T KOG1897|consen 846 INQSVRLYEWTTERE----LRIECNI-------------SNPIIALDLQVKGDEIAVGDLMRSITLLQY 897 (1096)
T ss_pred cCcEEEEEEccccce----ehhhhcc-------------cCCeEEEEEEecCcEEEEeeccceEEEEEE
Confidence 667899999988754 3444443 578888888889999999976 77766655
No 441
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.13 E-value=0.2 Score=46.30 Aligned_cols=139 Identities=17% Similarity=0.142 Sum_probs=89.1
Q ss_pred EEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhccee
Q 014005 38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 117 (432)
Q Consensus 38 ~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 117 (432)
..|-|.+.-++.++.+..+..||-...... .+.. +....
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~~l------------------------------e~n~-----------tg~al 78 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQVIL------------------------------ELNP-----------TGKAL 78 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcceec------------------------------ccCC-----------chhHh
Confidence 456677777888888888888886553311 1111 14556
Q ss_pred EEEEEEcCCCCEEE-EEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceE
Q 014005 118 RVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 196 (432)
Q Consensus 118 ~l~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v 196 (432)
.++| ..++..++ .+-..+.+.+||+.+.....+..-.. ..-.-..|++....++.+.. .+.+
T Consensus 79 dm~w--DkegdvlavlAek~~piylwd~n~eytqqLE~gg~-------------~s~sll~wsKg~~el~ig~~--~gn~ 141 (615)
T KOG2247|consen 79 DMAW--DKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGT-------------SSKSLLAWSKGTPELVIGNN--AGNI 141 (615)
T ss_pred hhhh--ccccchhhhhhhcCCCeeechhhhhhHHHHhccCc-------------chHHHHhhccCCcccccccc--ccce
Confidence 6777 56666544 45677899999998654322221111 12223778888888888876 8899
Q ss_pred EEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcC
Q 014005 197 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD 238 (432)
Q Consensus 197 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d 238 (432)
.+++.. ..+..-.. ..|..++.++++.+.+..+..+.|
T Consensus 142 viynhg---tsR~iiv~-Gkh~RRgtq~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 142 VIYNHG---TSRRIIVM-GKHQRRGTQIAVTLEDYVILCDCD 179 (615)
T ss_pred EEEecc---chhhhhhh-cccccceeEEEecccceeeecCcH
Confidence 999887 33333333 348889999999998865444333
No 442
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=83.83 E-value=51 Score=33.23 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=50.6
Q ss_pred CCCeeEEEeC--CCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCC--Cc---EEEEEeCC
Q 014005 218 DFNINSISNN--SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY--CN---LLAYSSSR 289 (432)
Q Consensus 218 ~~~i~~~~~~--~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~---~l~~~~~d 289 (432)
....+.++++ ...+++|++ ....|.+|-........... + -..+...|-+|.|-++. +. .+++++-.
T Consensus 163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~---~--s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~ 237 (717)
T PF08728_consen 163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV---P--SHQHSHNIPNVSFLDDDLDPNGHVKVVATDIS 237 (717)
T ss_pred CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccc---c--ccccccCCCeeEeecCCCCCccceEEEEEecc
Confidence 4478889988 788889988 67777777665221111110 0 12355568889987654 12 78889999
Q ss_pred CeEEEEEcc
Q 014005 290 GFVRLVDMR 298 (432)
Q Consensus 290 g~i~iwd~~ 298 (432)
|.+.+|++.
T Consensus 238 G~v~~~~I~ 246 (717)
T PF08728_consen 238 GEVWTFKIK 246 (717)
T ss_pred CcEEEEEEE
Confidence 999998883
No 443
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=82.97 E-value=4.9 Score=23.14 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=18.0
Q ss_pred CCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 277 PIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 277 p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
|++..++++...+++|.++|..+++.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~ 26 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKV 26 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeE
Confidence 56623455555688999999987665
No 444
>PRK13684 Ycf48-like protein; Provisional
Probab=82.74 E-value=38 Score=30.90 Aligned_cols=112 Identities=12% Similarity=0.023 Sum_probs=65.7
Q ss_pred CCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005 218 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (432)
Q Consensus 218 ~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~ 297 (432)
...+.++.+.|++.+++++..|.+..- .+..++..... ...-...++++.+.|++ +.++++ ..|.+.+=..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~------~~~~~~~l~~i~~~~~g-~~~~vg-~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPH------QRNSSRRLQSMGFQPDG-NLWMLA-RGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEe------eCCCcccceeeeEcCCC-CEEEEe-cCCEEEEccC
Confidence 457889999999988888877765532 11122333222 02334578999999998 776654 5676653223
Q ss_pred cccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEE
Q 014005 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK 351 (432)
Q Consensus 298 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~ 351 (432)
..|... ..... +... ....+.++.+.++++.++.|.+|.+.
T Consensus 243 d~G~sW----~~~~~----~~~~-----~~~~l~~v~~~~~~~~~~~G~~G~v~ 283 (334)
T PRK13684 243 DDLESW----SKPII----PEIT-----NGYGYLDLAYRTPGEIWAGGGNGTLL 283 (334)
T ss_pred CCCCcc----ccccC----Cccc-----cccceeeEEEcCCCCEEEEcCCCeEE
Confidence 333321 11111 0000 02357889999999988888776554
No 445
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=82.49 E-value=27 Score=29.01 Aligned_cols=33 Identities=6% Similarity=0.041 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCEEEEEeC--CCeEEEEEccCcceeee
Q 014005 117 NRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI 152 (432)
Q Consensus 117 ~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~ 152 (432)
..+.+ -+|.++.+.+. ...|++||+.+++....
T Consensus 49 QGL~~---~~g~i~esTG~yg~S~ir~~~L~~gq~~~s 83 (262)
T COG3823 49 QGLEY---LDGHILESTGLYGFSKIRVSDLTTGQEIFS 83 (262)
T ss_pred cceee---eCCEEEEeccccccceeEEEeccCceEEEE
Confidence 35566 35666666654 35799999998875443
No 446
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=81.87 E-value=0.27 Score=45.43 Aligned_cols=101 Identities=8% Similarity=0.088 Sum_probs=67.8
Q ss_pred CCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 014005 219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (432)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd 296 (432)
+....++|..++..++.. ..+.+.+||+.. . ....++ .-..+.... +.|++.. ..++.+...|.+.|++
T Consensus 75 g~aldm~wDkegdvlavlAek~~piylwd~n~-e-ytqqLE----~gg~~s~sl--l~wsKg~-~el~ig~~~gn~viyn 145 (615)
T KOG2247|consen 75 GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS-E-YTQQLE----SGGTSSKSL--LAWSKGT-PELVIGNNAGNIVIYN 145 (615)
T ss_pred hhHhhhhhccccchhhhhhhcCCCeeechhhh-h-hHHHHh----ccCcchHHH--HhhccCC-ccccccccccceEEEe
Confidence 345567788787777654 789999999982 2 212110 001222222 7788887 7888888999999999
Q ss_pred ccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (432)
Q Consensus 297 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~ 345 (432)
..+.+. +-....| ...++.++|.+.+..+..+
T Consensus 146 hgtsR~----iiv~Gkh-------------~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 146 HGTSRR----IIVMGKH-------------QRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred ccchhh----hhhhccc-------------ccceeEEEecccceeeecC
Confidence 988765 2334435 6788999999987655443
No 447
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.42 E-value=50 Score=31.60 Aligned_cols=82 Identities=7% Similarity=0.048 Sum_probs=46.9
Q ss_pred CeeEEEeCCCCCEEEEE-cCCeEEEEeCCC--------CCce---eeEeecCCCCcC-CCCcceEEEEEcCCC--CcEEE
Q 014005 220 NINSISNNSDCETFVSA-DDLRINLWNLEI--------SDQC---FNIVDMKPSNMD-DLTEVITSAEFHPIY--CNLLA 284 (432)
Q Consensus 220 ~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~--------~~~~---~~~~~~~~~~~~-~~~~~v~~~~~~p~~--~~~l~ 284 (432)
.|..+..++.|..++-+ .+|.+.++=.+. .++. -+++.+...-+. ...-.+..++|||+. ...|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 46667777877777755 666554432110 1111 111111111111 112246788999986 46788
Q ss_pred EEeCCCeEEEEEccccc
Q 014005 285 YSSSRGFVRLVDMRQSA 301 (432)
Q Consensus 285 ~~~~dg~i~iwd~~~~~ 301 (432)
.-+.|+.||+||+..-.
T Consensus 185 iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEecCcEEEEEecCCcc
Confidence 88899999999988643
No 448
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=80.30 E-value=62 Score=31.76 Aligned_cols=28 Identities=14% Similarity=0.129 Sum_probs=19.3
Q ss_pred CCCEEEEee-CCeEEEEec---CcceeEeecc
Q 014005 338 DGQHLLSRD-YMNLKVFRY---EPVMTLSFCG 365 (432)
Q Consensus 338 dg~~l~s~~-~~~i~iwd~---~~~~~~~~~~ 365 (432)
.|.+++.++ +|.++.+|. +.+-.++...
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 344555665 599999999 6777666654
No 449
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=80.25 E-value=42 Score=29.79 Aligned_cols=82 Identities=17% Similarity=0.136 Sum_probs=51.8
Q ss_pred cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcC------CCCcEEEEEeCCCeEEEEEccccccccccceee
Q 014005 237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL 310 (432)
Q Consensus 237 ~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 310 (432)
.-|.|.+||.. +..++.+ ...+.-+..+.++..| .+ .+|+---.||+|..||..+++. +-.+
T Consensus 220 G~G~VdvFd~~--G~l~~r~-----as~g~LNaPWG~a~APa~FG~~sg-~lLVGNFGDG~InaFD~~sG~~----~g~L 287 (336)
T TIGR03118 220 GLGYVNVFTLN--GQLLRRV-----ASSGRLNAPWGLAIAPESFGSLSG-ALLVGNFGDGTINAYDPQSGAQ----LGQL 287 (336)
T ss_pred CcceEEEEcCC--CcEEEEe-----ccCCcccCCceeeeChhhhCCCCC-CeEEeecCCceeEEecCCCCce----eeee
Confidence 45789999998 6666655 1234445667787755 33 5666555799999999998875 3334
Q ss_pred cccccccCCccceeeeecceeEEEEcC
Q 014005 311 RDAAESHGSKSFFTEIIASISDIKFAN 337 (432)
Q Consensus 311 ~~h~~~~~~~~~~~~~~~~v~~~~~s~ 337 (432)
..-... .-....++.++|-.
T Consensus 288 ~~~~G~-------pi~i~GLWgL~fGn 307 (336)
T TIGR03118 288 LDPDNH-------PVKVDGLWSLTFGN 307 (336)
T ss_pred cCCCCC-------eEEecCeEEeeeCC
Confidence 331000 11145678888876
No 450
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=79.08 E-value=13 Score=36.65 Aligned_cols=74 Identities=11% Similarity=0.045 Sum_probs=40.3
Q ss_pred CCCCEEEEE-cCCeEEEEeCCC---CCceeeEeecCCC-------Cc--------CCCCcceEEEEEcC----CCCcEEE
Q 014005 228 SDCETFVSA-DDLRINLWNLEI---SDQCFNIVDMKPS-------NM--------DDLTEVITSAEFHP----IYCNLLA 284 (432)
Q Consensus 228 ~~~~~l~~~-~d~~i~lwd~~~---~~~~~~~~~~~~~-------~~--------~~~~~~v~~~~~~p----~~~~~l~ 284 (432)
++...++.+ .||.+....... .+........... .+ .........++.++ +. .+++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD-TFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT-TEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC-CEEE
Confidence 455677777 888887777663 1222221111110 00 01123455666666 44 8999
Q ss_pred EEeCCCeEEEEEcccccc
Q 014005 285 YSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 285 ~~~~dg~i~iwd~~~~~~ 302 (432)
+-+.|+.+|+||+.+++.
T Consensus 235 tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EEETTSEEEEEETTTTCE
T ss_pred EEeCCCeEEEEECCCCeE
Confidence 999999999999998875
No 451
>PHA03098 kelch-like protein; Provisional
Probab=78.46 E-value=60 Score=31.89 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=18.7
Q ss_pred CCCEEEEEeCC------CeEEEEEccCcceeeee
Q 014005 126 NGSMFILSTND------KTIKLWKVRDQKVKKIK 153 (432)
Q Consensus 126 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~~ 153 (432)
++..++.|+.+ +.+..||..++++....
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 56666777632 46888998887765543
No 452
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=77.91 E-value=65 Score=33.36 Aligned_cols=131 Identities=12% Similarity=0.123 Sum_probs=0.0
Q ss_pred CCCeeEEEeC-------CCCCEEEEEcCCeEEEEe------CCCCCceeeEeecCCC----CcCCCCcceEEEEEcCCCC
Q 014005 218 DFNINSISNN-------SDCETFVSADDLRINLWN------LEISDQCFNIVDMKPS----NMDDLTEVITSAEFHPIYC 280 (432)
Q Consensus 218 ~~~i~~~~~~-------~~~~~l~~~~d~~i~lwd------~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~p~~~ 280 (432)
..+|..|+|. +..++|++=....+.|+. +.........++..+. .-..-..+...++|+|...
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~ 158 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ 158 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc
Q ss_pred cEEEEEeCCCeEEEEEc----cccccccccceeecccc-cccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 281 NLLAYSSSRGFVRLVDM----RQSALCDHSARILRDAA-ESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 281 ~~l~~~~~dg~i~iwd~----~~~~~~~~~~~~~~~h~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
..||.-...|...|||+ +......+......++- .++.. ......+.|.++-..|+.++...+.++|+
T Consensus 159 ~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e-------~s~w~rI~W~~~~~~lLv~~r~~l~~~d~ 231 (765)
T PF10214_consen 159 RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEE-------LSNWKRILWVSDSNRLLVCNRSKLMLIDF 231 (765)
T ss_pred ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcc-------cCcceeeEecCCCCEEEEEcCCceEEEEC
No 453
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=77.71 E-value=67 Score=30.67 Aligned_cols=32 Identities=9% Similarity=0.170 Sum_probs=24.8
Q ss_pred CcEEEEEEcCCCCEEEEecccceEEEEEecCC
Q 014005 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGG 64 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~ 64 (432)
+.-+.|+|.|+|++|++--..|.|++++..++
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 45688999999988877654699999876543
No 454
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=77.06 E-value=11 Score=21.31 Aligned_cols=30 Identities=13% Similarity=-0.020 Sum_probs=18.2
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCC--CeEEEE
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSR--GFVRLV 295 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~d--g~i~iw 295 (432)
.........|+|||..++.++..+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344577899999994444444455 555555
No 455
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=75.99 E-value=40 Score=27.23 Aligned_cols=31 Identities=13% Similarity=0.432 Sum_probs=24.1
Q ss_pred cceeEEEEEEcCC------CCEEEEEeCCCeEEEEEccC
Q 014005 114 EKINRVRWCAAPN------GSMFILSTNDKTIKLWKVRD 146 (432)
Q Consensus 114 ~~v~~l~~~~s~~------~~~l~s~~~d~~i~iwd~~~ 146 (432)
..|..++| ||. +.+|++-+.++.|.+|....
T Consensus 86 ~~vv~~aW--SP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAW--SPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEE--CCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 37899999 553 24677789999999998763
No 456
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=75.91 E-value=14 Score=34.36 Aligned_cols=28 Identities=21% Similarity=0.238 Sum_probs=24.8
Q ss_pred CeeEEEeCCCCCEEEEEcCCeEEEEeCC
Q 014005 220 NINSISNNSDCETFVSADDLRINLWNLE 247 (432)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~d~~i~lwd~~ 247 (432)
.+.-++++|++.++++-+.|.++++.++
T Consensus 359 ~~~~~~~Sp~~~~Ll~e~~gki~~~~l~ 386 (733)
T COG4590 359 APQLVAMSPNQAYLLSEDQGKIRLAQLE 386 (733)
T ss_pred CcceeeeCcccchheeecCCceEEEEec
Confidence 5667899999999998899999999887
No 457
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=75.61 E-value=85 Score=30.82 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=35.8
Q ss_pred eEEEEeCCCCCceeeEeecCCCCcCCCC--cceEEEEEcCCCC--cEEEEEeCCCeEEEEEcccccc
Q 014005 240 RINLWNLEISDQCFNIVDMKPSNMDDLT--EVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 240 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~--~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
.|.-.|++ +++..-.++..+...-... ....-+.+..+|. +.++.+..+|.+.+.|.++|+.
T Consensus 272 s~vAld~~-TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 272 SIVARDPD-TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred eEEEEccc-cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 45556666 5555554433222111111 1122233334662 4888999999999999999986
No 458
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.06 E-value=97 Score=31.22 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=28.6
Q ss_pred CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccc
Q 014005 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 301 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 301 (432)
.+.+..+..||+. ++|+--..+|.|.+-++...+
T Consensus 216 ~~~~~ki~VS~n~-~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 216 NSSVVKISVSPNR-RFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred CceEEEEEEcCCc-ceEEEEecCCcEEEEecchhh
Confidence 3568889999998 999999999999998877544
No 459
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=74.69 E-value=77 Score=32.16 Aligned_cols=103 Identities=12% Similarity=-0.000 Sum_probs=55.3
Q ss_pred ccccccCCCCCcceecceeec---cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCC
Q 014005 172 NFMNEHNPPSFAHGYHLEWTE---NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEI 248 (432)
Q Consensus 172 ~i~~~~~~~~~~~~~~~~~~~---~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~ 248 (432)
.-..+.|-|+|..+++-.... ...|.++..+.-.-+..-.. .+.......++|+-....++.+..+.+.+|-..+
T Consensus 248 ~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr--~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkN 325 (1243)
T COG5290 248 MEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR--VGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKN 325 (1243)
T ss_pred chhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc--CCchhhhhhhhhhHHHHHHHHhhcceEEEEEccc
Confidence 334578899988887765311 22555555442211211000 2333456667777766666767788899998762
Q ss_pred CCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEE
Q 014005 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (432)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 284 (432)
-...++. .-.-..+.-+.|+|...+.|.
T Consensus 326 yhWYLK~--------e~~ip~~s~vkwhpe~~nTl~ 353 (1243)
T COG5290 326 YHWYLKV--------ERQIPGISYVKWHPEEKNTLL 353 (1243)
T ss_pred eEEEEEE--------eecCCCcceeeeccccCcEEE
Confidence 2222221 122233556778886533333
No 460
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=74.12 E-value=75 Score=29.46 Aligned_cols=103 Identities=7% Similarity=0.011 Sum_probs=56.4
Q ss_pred CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEc--C-CCCcEEEEEeCCCeEEEEEccc---cccccccceeecc
Q 014005 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--P-IYCNLLAYSSSRGFVRLVDMRQ---SALCDHSARILRD 312 (432)
Q Consensus 239 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p-~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~ 312 (432)
.+|++|.+......+..+.-....+......+..+|+. | ++.-+.+..+.+|.+..|.+.. +.+..+.++.|..
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 46888877622223332210000011112346777774 3 3434666778899998888752 3333334677766
Q ss_pred cccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 313 h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
...+..+.......+|..|.. .-|.-|+.
T Consensus 207 --------------~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~A 236 (381)
T PF02333_consen 207 --------------GSQPEGCVVDDETGRLYVGEEDVGIWRYDA 236 (381)
T ss_dssp --------------SS-EEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred --------------CCcceEEEEecccCCEEEecCccEEEEEec
Confidence 467889999988888888865 44444444
No 461
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=73.29 E-value=60 Score=27.98 Aligned_cols=147 Identities=8% Similarity=0.013 Sum_probs=74.4
Q ss_pred EEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec-cceEEEEeecccccceeeEEee---
Q 014005 139 IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE-NMATKIANVGNSVHARCQKVYP--- 214 (432)
Q Consensus 139 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~v~i~d~~~~~~~~~~~~~~--- 214 (432)
-.+||+.+++.+.+... .. --...-.+-++|.++.+|+... ...+++++.... ...|.....
T Consensus 48 s~~yD~~tn~~rpl~v~--td-----------~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~-~~~~~w~e~~~~ 113 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ--TD-----------TFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTS-DGTCDWTESPND 113 (243)
T ss_pred EEEEecCCCcEEeccCC--CC-----------CcccCcCCCCCCCEEEeCCCCccccceEEEecCCC-CCCCCceECccc
Confidence 45788888876544221 11 1223345667888888887643 346777775430 111111100
Q ss_pred cCCCCCeeEEEeCCCCCEEEEE-c-CCeEEEEeCCCCCceeeEeecCCCC-cCCCCcceEEEEEcCCCCcEEEEEeCCCe
Q 014005 215 HAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSN-MDDLTEVITSAEFHPIYCNLLAYSSSRGF 291 (432)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~l~~~-~-d~~i~lwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 291 (432)
-.....-.+...-|||+.++.| . ..+...|.-.........+...... .......--.+-..|+| ++|+.+..+.
T Consensus 114 m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG-~lFi~an~~s- 191 (243)
T PF07250_consen 114 MQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDG-NLFIFANRGS- 191 (243)
T ss_pred ccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCC-CEEEEEcCCc-
Confidence 0112233345566899999987 4 4455566543111111111000000 00111222356678999 9988887664
Q ss_pred EEEEEcccccc
Q 014005 292 VRLVDMRQSAL 302 (432)
Q Consensus 292 i~iwd~~~~~~ 302 (432)
.|||..+++.
T Consensus 192 -~i~d~~~n~v 201 (243)
T PF07250_consen 192 -IIYDYKTNTV 201 (243)
T ss_pred -EEEeCCCCeE
Confidence 4678877654
No 462
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=72.94 E-value=1.2e+02 Score=31.36 Aligned_cols=76 Identities=13% Similarity=0.090 Sum_probs=48.0
Q ss_pred CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeE-ee-cCCC---Cc--C----CCCcceEEEEEcCCCCcEEE
Q 014005 217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI-VD-MKPS---NM--D----DLTEVITSAEFHPIYCNLLA 284 (432)
Q Consensus 217 ~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~-~~-~~~~---~~--~----~~~~~v~~~~~~p~~~~~l~ 284 (432)
....|.++....-+..++.+ .||+|.++|..+....... .. -.+. ++ . .....+-.++|||.+ ..++
T Consensus 258 ~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~-c~~v 336 (753)
T PF11635_consen 258 LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTM-CSLV 336 (753)
T ss_pred cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECccc-ceEE
Confidence 34578888888878888888 9999999998733222111 00 0000 00 0 011134568899999 7788
Q ss_pred EEeCCCeEE
Q 014005 285 YSSSRGFVR 293 (432)
Q Consensus 285 ~~~~dg~i~ 293 (432)
.-..+|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 888888866
No 463
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.76 E-value=67 Score=34.25 Aligned_cols=31 Identities=35% Similarity=0.611 Sum_probs=26.5
Q ss_pred CcEEEEEEcCCCCEEEEecccceEEEEEecC
Q 014005 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVG 63 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~ 63 (432)
.....++|+|.-.++|.|..+|.|+++-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 3556789999999999999999999997654
No 464
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=72.10 E-value=42 Score=25.69 Aligned_cols=62 Identities=6% Similarity=0.102 Sum_probs=38.9
Q ss_pred CCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCC--CcEEEEEeCCCeEEEEEccc
Q 014005 229 DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY--CNLLAYSSSRGFVRLVDMRQ 299 (432)
Q Consensus 229 ~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~i~iwd~~~ 299 (432)
+...|+.|....+..||+......+. +.-...|+++.+-.-+ +.-++..+.+..|.=||...
T Consensus 63 ~~D~LliGt~t~llaYDV~~N~d~Fy---------ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 63 GRDCLLIGTQTSLLAYDVENNSDLFY---------KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred CcCEEEEeccceEEEEEcccCchhhh---------hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 45678888888999999994443332 3444567777763211 13344455577788888653
No 465
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=72.02 E-value=16 Score=20.68 Aligned_cols=28 Identities=7% Similarity=-0.019 Sum_probs=19.4
Q ss_pred CCCCeeEEEeCCCCCEEEEE--cC--CeEEEE
Q 014005 217 HDFNINSISNNSDCETFVSA--DD--LRINLW 244 (432)
Q Consensus 217 ~~~~i~~~~~~~~~~~l~~~--~d--~~i~lw 244 (432)
.........|+|||+.|+-. .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 44567788999999998855 55 666555
No 466
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=71.94 E-value=17 Score=30.36 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=34.3
Q ss_pred EEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 282 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 282 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
.|+.+...+.|.+|++.... + .....|.. .+.|..+.++..|.||++
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~-~-~~~~~F~T--------------v~~V~~l~y~~~GDYlvT 76 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEE-C-PLLCTFST--------------VGRVLQLVYSEAGDYLVT 76 (215)
T ss_pred eEEEEcCCCEEEEEEcccCC-C-ceeEEEcc--------------hhheeEEEeccccceEEE
Confidence 34344667789999998322 1 12456665 588999999999999999
No 467
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=71.04 E-value=93 Score=29.22 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=62.7
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCccee---eeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK---KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
..+..+.| .+++..++++ .+|.+. +....++.. .+....... ....+..+.+.+++...+.|.
T Consensus 281 ~~l~~v~~--~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~---------~~~~l~~v~~~~d~~~~a~G~- 346 (398)
T PLN00033 281 RRIQNMGW--RADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKS---------RGFGILDVGYRSKKEAWAAGG- 346 (398)
T ss_pred cceeeeeE--cCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCC---------CCcceEEEEEcCCCcEEEEEC-
Confidence 56888999 7888777666 456543 343333311 111111100 013467777887777666665
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEE
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLW 244 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lw 244 (432)
.|.+.... ....+.+....- ..-...++.+.|.++++.+++|.+|.|.-|
T Consensus 347 --~G~v~~s~-D~G~tW~~~~~~-~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 347 --SGILLRST-DGGKSWKRDKGA-DNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred --CCcEEEeC-CCCcceeEcccc-CCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 34443332 211122222111 233456889999888889999988887654
No 468
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.20 E-value=63 Score=26.96 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=33.0
Q ss_pred CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC-----CcCCCCcceEEEEEcCCCCcEEEEE
Q 014005 229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-----NMDDLTEVITSAEFHPIYCNLLAYS 286 (432)
Q Consensus 229 ~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~~~~~l~~~ 286 (432)
+|...|-. .+..|...|.+ +++....+++... ....+.+..+.+++.|++.+++++|
T Consensus 185 dG~lyANVw~t~~I~rI~p~-sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 185 DGELYANVWQTTRIARIDPD-SGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccEEEEeeeeecceEEEcCC-CCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 45444444 45555555666 5555555544332 1134456778999999885666655
No 469
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=70.20 E-value=14 Score=19.31 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCEEEEecccceEEEE
Q 014005 35 VSAIEFDKTGDYLAVGDRGGRVILF 59 (432)
Q Consensus 35 V~~~~fsp~g~~l~t~~~dg~i~iw 59 (432)
-..++++++|+++++=+....|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567888888877777666777654
No 470
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=67.48 E-value=54 Score=25.13 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=44.9
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEccccccc----cccceeecccccccCCccceeeeecceeEEE---EcC--CCCEE
Q 014005 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC----DHSARILRDAAESHGSKSFFTEIIASISDIK---FAN--DGQHL 342 (432)
Q Consensus 272 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~---~s~--dg~~l 342 (432)
.-.|.... ..|++++.-|+|.|++....... ...++.+.- ...|++++ |.| +...|
T Consensus 3 iGkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--------------n~~italaaG~l~~~~~~D~L 67 (136)
T PF14781_consen 3 IGKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--------------NQEITALAAGRLKPDDGRDCL 67 (136)
T ss_pred EEEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEEC--------------CCceEEEEEEecCCCCCcCEE
Confidence 34677777 68889999999999987743321 001233322 34555554 432 34578
Q ss_pred EEeeCCeEEEEec
Q 014005 343 LSRDYMNLKVFRY 355 (432)
Q Consensus 343 ~s~~~~~i~iwd~ 355 (432)
+.|+...+..||+
T Consensus 68 liGt~t~llaYDV 80 (136)
T PF14781_consen 68 LIGTQTSLLAYDV 80 (136)
T ss_pred EEeccceEEEEEc
Confidence 8898899999999
No 471
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=67.16 E-value=1.1e+02 Score=28.68 Aligned_cols=114 Identities=12% Similarity=0.101 Sum_probs=69.5
Q ss_pred CCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCc-----eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC
Q 014005 216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ-----CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290 (432)
Q Consensus 216 ~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 290 (432)
.....+.++.+.+++..++++.+|.+.. ... .+. .+... ........+..+.|.+++ ..++ ++.+|
T Consensus 278 ~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d-~G~~~~~~~f~~~-----~~~~~~~~l~~v~~~~d~-~~~a-~G~~G 348 (398)
T PLN00033 278 ASARRIQNMGWRADGGLWLLTRGGGLYV-SKG-TGLTEEDFDFEEA-----DIKSRGFGILDVGYRSKK-EAWA-AGGSG 348 (398)
T ss_pred CCccceeeeeEcCCCCEEEEeCCceEEE-ecC-CCCcccccceeec-----ccCCCCcceEEEEEcCCC-cEEE-EECCC
Confidence 4456788999999999988887777543 333 232 12211 111122458899999887 6555 55677
Q ss_pred eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEE
Q 014005 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVF 353 (432)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iw 353 (432)
.+.... ..|+. .+.... . .........+.|.++++.+++|.+|.|.-|
T Consensus 349 ~v~~s~-D~G~t----W~~~~~-~---------~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 349 ILLRST-DGGKS----WKRDKG-A---------DNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred cEEEeC-CCCcc----eeEccc-c---------CCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 665543 33442 122110 0 001346789999999999999988887655
No 472
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=64.31 E-value=20 Score=35.66 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=28.8
Q ss_pred CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccc
Q 014005 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 301 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 301 (432)
...++++.-+|.+ +-++.+..||.|++|+.-..+
T Consensus 14 ~e~~~aiqshp~~-~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGG-QSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred cceeeeeeecCCC-ceEEEEecCCcEEEEeecccc
Confidence 3457888999998 999999999999999986544
No 473
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=63.44 E-value=1.9e+02 Score=29.99 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=47.3
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCc------c-ceeeeecceeEEEEcCCCC
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK------S-FFTEIIASISDIKFANDGQ 340 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~------~-~~~~~~~~v~~~~~s~dg~ 340 (432)
..|.++....-+ .+++.+-.||+|.++|-.+.+.. .....-.+.+... + .|+.. ..+..++|||++.
T Consensus 260 ~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~----~~~~~~~~~~~~v~s~~~~Gf~fp~~-~~~~~vafSPt~c 333 (753)
T PF11635_consen 260 KRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKEL----NETRTNGEPPNTVTSLFQAGFHFPCI-QPPLHVAFSPTMC 333 (753)
T ss_pred CeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhh----cccccccCCccccccccccccccccC-CCCceEEECcccc
Confidence 457777777777 88999999999999998876542 1110000111100 0 11111 2455689999998
Q ss_pred EEEEe-eCCeEE
Q 014005 341 HLLSR-DYMNLK 351 (432)
Q Consensus 341 ~l~s~-~~~~i~ 351 (432)
-++.- .+|.+.
T Consensus 334 ~~v~~~~~~~~~ 345 (753)
T PF11635_consen 334 SLVQIDEDGKTK 345 (753)
T ss_pred eEEEEecCCCce
Confidence 88774 446644
No 474
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=61.08 E-value=39 Score=23.60 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=22.6
Q ss_pred cceeEEEEcCCCCEEEEeeC--CeEEEEec
Q 014005 328 ASISDIKFANDGQHLLSRDY--MNLKVFRY 355 (432)
Q Consensus 328 ~~v~~~~~s~dg~~l~s~~~--~~i~iwd~ 355 (432)
...+++.++|++++|..++- +.|++|+.
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 56778999999999887643 89999875
No 475
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=59.67 E-value=14 Score=36.36 Aligned_cols=34 Identities=9% Similarity=0.233 Sum_probs=25.6
Q ss_pred CcEEEEEEcC----CCCEEEEecccceEEEEEecCCcC
Q 014005 33 DIVSAIEFDK----TGDYLAVGDRGGRVILFETVGGKN 66 (432)
Q Consensus 33 ~~V~~~~fsp----~g~~l~t~~~dg~i~iw~~~~~~~ 66 (432)
+.+..+++++ +..+|++.+.|+++|+||+.+++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 3455666666 678999999999999999999875
No 476
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=59.34 E-value=1.2e+02 Score=26.54 Aligned_cols=240 Identities=14% Similarity=0.067 Sum_probs=130.6
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
.-..++-+|||..-.++...|.|--.|..+++.. +.-.+..
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~---------------------------~ypLg~G------------ 103 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVE---------------------------TYPLGSG------------ 103 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceE---------------------------EEecCCC------------
Confidence 4455666677766666666666666666665432 1111111
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
..-..|.. -|||...++-+.. -|.-.|-++.+.+.+.--..+ .........|++.+..=.++....-
T Consensus 104 a~Phgiv~--gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~----------a~~nlet~vfD~~G~lWFt~q~G~y 170 (353)
T COG4257 104 ASPHGIVV--GPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEH----------ADANLETAVFDPWGNLWFTGQIGAY 170 (353)
T ss_pred CCCceEEE--CCCCCeeEecCcc-eeEEecCcccceEEeeccccc----------CCCcccceeeCCCccEEEeeccccc
Confidence 33345555 6777766665433 344446555554433221111 2366777788888877766654221
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (432)
|. .+.....++++........+.|+..|+|..-.+. .++.|-..|.. .+. -+.+. .| ......-+.
T Consensus 171 Gr-------LdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~-~~~-aev~p-~P---~~~~~gsRr 237 (353)
T COG4257 171 GR-------LDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPF-AGH-AEVVP-QP---NALKAGSRR 237 (353)
T ss_pred ee-------cCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccc-cCC-cceec-CC---Ccccccccc
Confidence 11 0112223333323344567788999999988887 77777777766 232 22221 11 222233455
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEE
Q 014005 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLK 351 (432)
Q Consensus 273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~ 351 (432)
+--+|.+ ..-++-...+.+..+|.....-. ...+.+. ...-.++.....|+.-.+- +.|.|.
T Consensus 238 iwsdpig-~~wittwg~g~l~rfdPs~~sW~---eypLPgs-------------~arpys~rVD~~grVW~sea~agai~ 300 (353)
T COG4257 238 IWSDPIG-RAWITTWGTGSLHRFDPSVTSWI---EYPLPGS-------------KARPYSMRVDRHGRVWLSEADAGAIG 300 (353)
T ss_pred cccCccC-cEEEeccCCceeeEeCcccccce---eeeCCCC-------------CCCcceeeeccCCcEEeeccccCcee
Confidence 6667787 77777777788888886643210 1112221 3345566677667666653 337777
Q ss_pred EEec
Q 014005 352 VFRY 355 (432)
Q Consensus 352 iwd~ 355 (432)
-+|.
T Consensus 301 rfdp 304 (353)
T COG4257 301 RFDP 304 (353)
T ss_pred ecCc
Confidence 7777
No 477
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=59.22 E-value=1.3e+02 Score=26.68 Aligned_cols=55 Identities=11% Similarity=0.161 Sum_probs=37.3
Q ss_pred CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe------CCCeEEEEEccccc
Q 014005 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS------SRGFVRLVDMRQSA 301 (432)
Q Consensus 238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~------~dg~i~iwd~~~~~ 301 (432)
-..|++||.. ..+-...- .+-.+.|+.+.|..+. ++++.|. ....+..||+.+..
T Consensus 15 C~~lC~yd~~-~~qW~~~g-------~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 15 CPGLCLYDTD-NSQWSSPG-------NGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CCEEEEEECC-CCEeecCC-------CCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCe
Confidence 4468899988 33322211 3456789999998665 7777775 35578899988654
No 478
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=56.66 E-value=1.5e+02 Score=26.56 Aligned_cols=215 Identities=14% Similarity=0.111 Sum_probs=109.7
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc-----ceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-----KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..-+.|++ +|.+.+.++....+...+||.... ...........+ ........+.+.|+....+.+++
T Consensus 23 ~N~WGia~--~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~------~~~~~~~PTGiVfN~~~~F~vt~ 94 (336)
T TIGR03118 23 RNAWGLSY--RPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPP------PLAAEGTPTGQVFNGSDTFVVSG 94 (336)
T ss_pred cccceeEe--cCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCC------CCCCCCCccEEEEeCCCceEEcC
Confidence 34578999 888888888888899999998611 111111111100 00011345666676665554443
Q ss_pred e----------eeccceEEEEeecccccc--eeeEEeecCCCCCee-EEEeC--CCCCEEEEE--cCCeEEEEeCCCCCc
Q 014005 189 E----------WTENMATKIANVGNSVHA--RCQKVYPHAHDFNIN-SISNN--SDCETFVSA--DDLRINLWNLEISDQ 251 (432)
Q Consensus 189 ~----------~~~~~~v~i~d~~~~~~~--~~~~~~~~~~~~~i~-~~~~~--~~~~~l~~~--~d~~i~lwd~~~~~~ 251 (432)
. ..++|+|.-|......+. .....+.....+.++ .+++. ..+.+|..+ .+++|.++|-.....
T Consensus 95 ~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~ 174 (336)
T TIGR03118 95 EGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP 174 (336)
T ss_pred CCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc
Confidence 1 123889999986533221 111222122223332 34443 446677666 799999998763221
Q ss_pred eee-EeecCCCCcCCCCc-----------ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCC
Q 014005 252 CFN-IVDMKPSNMDDLTE-----------VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS 319 (432)
Q Consensus 252 ~~~-~~~~~~~~~~~~~~-----------~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~ 319 (432)
.+. .+ ..| .+..--. .|+-..-.++. +-=+.|..-|.|.+||+. |++ ++.+...
T Consensus 175 ~~~g~F-~DP-~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~-G~l----~~r~as~------ 240 (336)
T TIGR03118 175 PLPGSF-IDP-ALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLN-GQL----LRRVASS------ 240 (336)
T ss_pred cCCCCc-cCC-CCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCC-CcE----EEEeccC------
Confidence 110 00 000 0011001 11111112222 222223345789999977 555 4656431
Q ss_pred ccceeeeecceeEEEEcC------CCCEEEEe-eCCeEEEEec
Q 014005 320 KSFFTEIIASISDIKFAN------DGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 320 ~~~~~~~~~~v~~~~~s~------dg~~l~s~-~~~~i~iwd~ 355 (432)
+.-+.-+.|+..| .|.+|+.- .||+|..||.
T Consensus 241 -----g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 241 -----GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDP 278 (336)
T ss_pred -----CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecC
Confidence 0134567777766 35666663 5699999997
No 479
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=53.63 E-value=25 Score=18.76 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=18.0
Q ss_pred EEEEEeCCCeEEEEEcccccc
Q 014005 282 LLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 282 ~l~~~~~dg~i~iwd~~~~~~ 302 (432)
.++.++.+|.+..+|.++|+.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~ 28 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEI 28 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcE
Confidence 577788899999999998875
No 480
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=52.57 E-value=1.7e+02 Score=26.03 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=60.3
Q ss_pred eEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCC----cEEEEE-eCCCeEEEEEccccccccccceeecccc
Q 014005 240 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC----NLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAA 314 (432)
Q Consensus 240 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~ 314 (432)
+|.+||+. +++.++.+.+.+.... ..+.++.+.++...+ .+...+ +..+-|.++|+.+++. .+.+.. .
T Consensus 35 KLv~~Dl~-t~~li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s----~Rv~~~-~ 107 (287)
T PF03022_consen 35 KLVAFDLK-TNQLIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKS----WRVLHN-S 107 (287)
T ss_dssp EEEEEETT-TTCEEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEE----EEEETC-G
T ss_pred EEEEEECC-CCcEEEEEECChHHcc-cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcE----EEEecC-C
Confidence 68889999 6778888877665544 456788888877431 223223 3445899999999875 344443 3
Q ss_pred cccCCc-cce------eeeecceeEEEEcC---CCCEEEEeeCCeEEEEec
Q 014005 315 ESHGSK-SFF------TEIIASISDIKFAN---DGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 315 ~~~~~~-~~~------~~~~~~v~~~~~s~---dg~~l~s~~~~~i~iwd~ 355 (432)
..+.+. ..+ -.....+.+++.+| +|++|.-+.-..-++|.+
T Consensus 108 ~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v 158 (287)
T PF03022_consen 108 FSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRV 158 (287)
T ss_dssp CTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEE
T ss_pred cceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEE
Confidence 332221 111 11223466777766 677776554333445555
No 481
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=51.73 E-value=58 Score=20.50 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCCEEEEecc-----cceEEEEEecC
Q 014005 34 IVSAIEFDKTGDYLAVGDR-----GGRVILFETVG 63 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~-----dg~i~iw~~~~ 63 (432)
.+.+++.-|+|++|+.|.. +....|..++.
T Consensus 2 ~~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~ 36 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNA 36 (55)
T ss_pred ceEEEEECCCCcEEEEEEeecCCCcccEEEEEECC
Confidence 5678999999999999853 33455666554
No 482
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=49.86 E-value=2.2e+02 Score=26.52 Aligned_cols=103 Identities=11% Similarity=0.044 Sum_probs=61.1
Q ss_pred cceEEEEeeccc----ccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCcee-eEeecCCCCcCCC
Q 014005 193 NMATKIANVGNS----VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF-NIVDMKPSNMDDL 266 (432)
Q Consensus 193 ~~~v~i~d~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~-~~~~~~~~~~~~~ 266 (432)
+|.+.-|.+... ...+.++.| .-.+.+..+........|..+ .+.-|.-|+.+-..... ..+.. ..-...
T Consensus 180 ~G~~~Qy~L~~~~~g~v~~~lVR~f--~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~--~~g~~l 255 (381)
T PF02333_consen 180 DGRVEQYELTDDGDGKVSATLVREF--KVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVAS--ADGDGL 255 (381)
T ss_dssp TSEEEEEEEEE-TTSSEEEEEEEEE--E-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEE--BSSSSB
T ss_pred CceEEEEEEEeCCCCcEeeEEEEEe--cCCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeec--cccccc
Confidence 677777766532 244667777 234588899999888899999 88888888876222111 11100 011234
Q ss_pred CcceEEEEEcC--CCC-cEEEEEeCCCeEEEEEccc
Q 014005 267 TEVITSAEFHP--IYC-NLLAYSSSRGFVRLVDMRQ 299 (432)
Q Consensus 267 ~~~v~~~~~~p--~~~-~~l~~~~~dg~i~iwd~~~ 299 (432)
...|-.+++-. ++. .+|++.-.+++..+||.+.
T Consensus 256 ~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 256 VADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp -S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred ccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 56677887753 332 4555555778999999764
No 483
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=49.79 E-value=38 Score=17.69 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=19.2
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEE
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFE 60 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~ 60 (432)
.|.+++..+ .+++.+...+.+|+|.
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 578888664 5788888888999873
No 484
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=49.37 E-value=2.5e+02 Score=27.11 Aligned_cols=68 Identities=12% Similarity=0.138 Sum_probs=45.5
Q ss_pred CeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005 220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (432)
Q Consensus 220 ~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 298 (432)
...+..-..+| ++|.| ..|-|++||.- +...++ .+++....|..+..+.+| .++++.+ ...+-+-|++
T Consensus 564 ~Fss~~tTesG-yIa~as~kGDirLyDRi--g~rAKt------alP~lG~aIk~idvta~G-k~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 564 KFSSGMTTESG-YIAAASRKGDIRLYDRI--GKRAKT------ALPGLGDAIKHIDVTANG-KHILATC-KNYLLLTDVP 632 (776)
T ss_pred cccccccccCc-eEEEecCCCceeeehhh--cchhhh------cCcccccceeeeEeecCC-cEEEEee-cceEEEEecc
Confidence 34444444445 77777 99999999976 222222 136777889999999999 6555444 4467777776
No 485
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.21 E-value=2.3e+02 Score=30.80 Aligned_cols=152 Identities=11% Similarity=0.097 Sum_probs=74.1
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEe--------CCCCCE-EEEEcCCeEEEEeCCCCCce--eeEeecCCC
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISN--------NSDCET-FVSADDLRINLWNLEISDQC--FNIVDMKPS 261 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~-l~~~~d~~i~lwd~~~~~~~--~~~~~~~~~ 261 (432)
|+.+.+|+.+. ......+ .+-...|..+.. .|.=++ |+.+.--.|.++-+.....+ ...+. ..-
T Consensus 98 Dn~L~lWny~~---~~e~~~~-d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~-~~~ 172 (1311)
T KOG1900|consen 98 DNNLFLWNYES---DNELAEY-DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFN-TSF 172 (1311)
T ss_pred CCeEEEEEcCC---CCccccc-cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccc-cce
Confidence 88999999984 3333333 344444544432 222223 33334444444433211111 01110 000
Q ss_pred CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc----c---cccccccceeeccc---ccccCCccceeeeeccee
Q 014005 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR----Q---SALCDHSARILRDA---AESHGSKSFFTEIIASIS 331 (432)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~----~---~~~~~~~~~~~~~h---~~~~~~~~~~~~~~~~v~ 331 (432)
++......|+++....+| ++|++| .|| .+|.+. . ++.|.+ ..+... ..-|.-.+.+..+..+|.
T Consensus 173 ~i~~dg~~V~~I~~t~nG-RIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~K--iclt~s~ls~lvPs~~~~~~~~~dpI~ 246 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENG-RIFFAG-RDG--NLYELVYQAEDGWFGSRCRK--ICLTKSVLSSLVPSLLSVPGSSKDPIR 246 (1311)
T ss_pred eeecCCceEEEEEeccCC-cEEEee-cCC--CEEEEEEeccCchhhccccc--ccCchhHHHHhhhhhhcCCCCCCCcce
Confidence 112234568899988888 877755 455 455433 1 111110 000000 000111111123367899
Q ss_pred EEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 332 DIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 332 ~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
.+........|.+-+. ++|.+||+
T Consensus 247 qi~ID~SR~IlY~lsek~~v~~Y~i 271 (1311)
T KOG1900|consen 247 QITIDNSRNILYVLSEKGTVSAYDI 271 (1311)
T ss_pred eeEeccccceeeeeccCceEEEEEc
Confidence 9999887777877655 99999999
No 486
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=48.62 E-value=2.1e+02 Score=25.97 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=67.9
Q ss_pred eeEEEEEEcCCCCEEEEEeCC------CeEEEEEccCcceeeeeecCCCCcccc--ccccccccccccccCCCCCcceec
Q 014005 116 INRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSS--ENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 116 v~~l~~~~s~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
.-+|++ .+++.++++.-.+ ..|..++.. +...........-.... ......+..+..++.++++..++.
T Consensus 87 ~Egi~~--~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 87 PEGIAV--PPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred hhHeEE--ecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 446778 5788888887777 788888876 44321111110000000 023346788999999999996655
Q ss_pred ceeec---cc---------eEEEEeecccccceeeEE--eecC------CCCCeeEEEeCCCCCEEEEE
Q 014005 188 LEWTE---NM---------ATKIANVGNSVHARCQKV--YPHA------HDFNINSISNNSDCETFVSA 236 (432)
Q Consensus 188 ~~~~~---~~---------~v~i~d~~~~~~~~~~~~--~~~~------~~~~i~~~~~~~~~~~l~~~ 236 (432)
....+ ++ .++++.......+..... +... ....+..+.+-+++++++.-
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 54322 22 266666553321222222 2112 45678899999999877754
No 487
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=47.75 E-value=3.4e+02 Score=28.18 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.8
Q ss_pred EEEEEeCCCeEEEEEccccccc
Q 014005 282 LLAYSSSRGFVRLVDMRQSALC 303 (432)
Q Consensus 282 ~l~~~~~dg~i~iwd~~~~~~~ 303 (432)
.++.++.+|.+.++|.++|+..
T Consensus 461 ~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 461 ALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred EEEEECCCCEEEEEECCCCCEE
Confidence 7889999999999999998864
No 488
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=47.48 E-value=2e+02 Score=25.46 Aligned_cols=39 Identities=13% Similarity=0.417 Sum_probs=27.9
Q ss_pred cceeEEEEEEcCCCCEEEEEe------CCCeEEEEEccCcceeeeee
Q 014005 114 EKINRVRWCAAPNGSMFILST------NDKTIKLWKVRDQKVKKIKE 154 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~ 154 (432)
+.|++|.| ..+.++++.|. ....+..||+.+..+..+..
T Consensus 37 G~V~~l~~--~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 37 GTVTDLQW--ASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred EEEEEEEE--ecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Confidence 88999999 55566666663 35678899998877655443
No 489
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=47.19 E-value=32 Score=19.37 Aligned_cols=21 Identities=10% Similarity=0.316 Sum_probs=17.6
Q ss_pred EEEEeCCCeEEEEEccccccc
Q 014005 283 LAYSSSRGFVRLVDMRQSALC 303 (432)
Q Consensus 283 l~~~~~dg~i~iwd~~~~~~~ 303 (432)
+..++.||.+.-.|.++|+..
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~ 23 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVL 23 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEE
T ss_pred EEEeCCCCEEEEEECCCCCEE
Confidence 455699999999999999873
No 490
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.08 E-value=4.6e+02 Score=28.31 Aligned_cols=32 Identities=13% Similarity=0.301 Sum_probs=25.8
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ 147 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~ 147 (432)
.....++| ++.-.+++.+...|.|+++-...-
T Consensus 36 ~~~~~~af--D~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 36 STPSALAF--DPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCCcceee--ccccceEEEEEecccEEEecccce
Confidence 45566788 888899999999999999876543
No 491
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=41.48 E-value=3.1e+02 Score=25.91 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=25.3
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccc
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 299 (432)
..|.+++..+.. +.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTT-TEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCc-CEEEEEeCCCcEEEEEEeC
Confidence 349999999988 9999999999999999974
No 492
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=40.75 E-value=1.3e+02 Score=30.75 Aligned_cols=132 Identities=12% Similarity=0.137 Sum_probs=73.1
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEE--------EeCCCCCceeeEeecCCCCc
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINL--------WNLEISDQCFNIVDMKPSNM 263 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~l--------wd~~~~~~~~~~~~~~~~~~ 263 (432)
.+.+.++.-.......+...+.......+.++.+++.. +..| -||++-. ||.+ ...++
T Consensus 556 ~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~S--lgagl~dgt~a~y~rap~gSwd~e-p~~~~---------- 622 (925)
T KOG3522|consen 556 TSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGS--LGAGLIDGTLAVYGRAPSGSWDGE-PNISI---------- 622 (925)
T ss_pred cceeEEeeccCCcccceeccCCCCchhhhhhhhccccc--cccCccCCccccccCCCCCCCCCC-Ccccc----------
Confidence 56677776552222223222223344456666665432 2223 4444433 4444 22221
Q ss_pred CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (432)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 343 (432)
..-..+|++.++..| +..|+.+|.|.++...+... ...++.| .++...|+.+....+|-+++
T Consensus 623 ~~g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~----~~~leah----------qee~~~Vthm~~~~~gVwva 684 (925)
T KOG3522|consen 623 PTGSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIR----SWDLEAH----------QEEAHSVTHMLYLDNGVWVA 684 (925)
T ss_pred ccCCccccchhhhhc----eeeeecCCceEEEechhccc----cchhHHH----------HhhcceEEEEEeeCCceEEE
Confidence 233456888888654 45577899999999876543 2333333 11246899999998888887
Q ss_pred EeeCCeEEEEec
Q 014005 344 SRDYMNLKVFRY 355 (432)
Q Consensus 344 s~~~~~i~iwd~ 355 (432)
-.+...++.++.
T Consensus 685 fasG~~~rlfht 696 (925)
T KOG3522|consen 685 FASGDEERLFHT 696 (925)
T ss_pred EcCCCEEEEecc
Confidence 654345555555
No 493
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=40.60 E-value=4.3e+02 Score=27.28 Aligned_cols=29 Identities=17% Similarity=0.404 Sum_probs=23.3
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKV 144 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~ 144 (432)
..|-..+| |.|.+.++....+..|.+++-
T Consensus 113 nGIvaa~w--S~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 113 NGIVAASW--SADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred CceEEEee--ccCCceEEEEEcCceEEEEec
Confidence 77888899 888887777777788888764
No 494
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=40.32 E-value=46 Score=18.87 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=15.7
Q ss_pred CCCEEEEEeCCCeEEEEEccC
Q 014005 126 NGSMFILSTNDKTIKLWKVRD 146 (432)
Q Consensus 126 ~~~~l~s~~~d~~i~iwd~~~ 146 (432)
.+..++.++.||.+..+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 355888898999999998753
No 495
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=40.07 E-value=2.8e+02 Score=24.89 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=28.0
Q ss_pred EEEEEEcCCCCEEEEecccceEEEEEecCCcCC
Q 014005 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNT 67 (432)
Q Consensus 35 V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~ 67 (432)
|++|...++|.+|++.-.-..|.+.+..+++.+
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~ 178 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKII 178 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEE
Confidence 788899999999999988888888888777643
No 496
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=39.89 E-value=1.8e+02 Score=26.08 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=45.7
Q ss_pred CCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC-CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 014005 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (432)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd 296 (432)
-.|+++...++|.+|++. .-..|.+.|.+ +++.+..+.-+.. .+.. .-...++-.+- +++-.+..++.|.++|
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~-tG~I~W~lgG~~~~df~~---~~~~f~~QHda-r~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRNTSTIYKIDPS-TGKIIWRLGGKRNSDFTL---PATNFSWQHDA-RFLNESNDDGTISLFD 218 (299)
T ss_pred cEeeeeeecCCccEEEEecccCEEEEEECC-CCcEEEEeCCCCCCcccc---cCCcEeeccCC-EEeccCCCCCEEEEEc
Confidence 368899999999999999 88899999987 6766665511100 0000 11123333332 4444456777888887
Q ss_pred c
Q 014005 297 M 297 (432)
Q Consensus 297 ~ 297 (432)
=
T Consensus 219 N 219 (299)
T PF14269_consen 219 N 219 (299)
T ss_pred C
Confidence 4
No 497
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=38.02 E-value=3.6e+02 Score=25.60 Aligned_cols=109 Identities=6% Similarity=0.055 Sum_probs=60.3
Q ss_pred CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeC---C--CCCEEEEEcCCeEEEEeCCCCCce----
Q 014005 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN---S--DCETFVSADDLRINLWNLEISDQC---- 252 (432)
Q Consensus 182 ~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~---~--~~~~l~~~~d~~i~lwd~~~~~~~---- 252 (432)
...++.|+. .|.++||+.........-..+...-..+|..+..- + +...||+=.-..+.+|.+...+..
T Consensus 37 ~d~IivGS~--~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSY--SGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEecc--ccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 456777888 99999999864321111111223455677777643 2 222333337888888887422111
Q ss_pred ----eeEeecCCCCcCCC--CcceEEEEEcCCC----CcEEEEEeCCCeEEEEEccc
Q 014005 253 ----FNIVDMKPSNMDDL--TEVITSAEFHPIY----CNLLAYSSSRGFVRLVDMRQ 299 (432)
Q Consensus 253 ----~~~~~~~~~~~~~~--~~~v~~~~~~p~~----~~~l~~~~~dg~i~iwd~~~ 299 (432)
+..+ ..| ......++.-|-| ..++..-+.||.+.+|+-+.
T Consensus 115 ~~~~L~~~-------yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~ 164 (418)
T PF14727_consen 115 NQYQLELI-------YEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES 164 (418)
T ss_pred cEEEEEEE-------EEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc
Confidence 1111 111 1122333333322 26788889999999999664
No 498
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=36.96 E-value=1.2e+02 Score=23.43 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=27.9
Q ss_pred CcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005 267 TEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d 338 (432)
...+.-.-|++|. ++|..++ .|++|+.|.+...+.....+..+.. .....+++|-|.
T Consensus 10 s~g~L~P~yD~dt-~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s--------------~~~~~G~~~lPK 67 (136)
T PF08954_consen 10 SSGVLMPFYDEDT-NLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRS--------------PEPQKGFAFLPK 67 (136)
T ss_dssp -SS-EEEEE-TTT--EEEEEETT-S-EEEEEE-SSTTSEEEEEEE----------------SS--SEEEE--G
T ss_pred CCceeEeeEcCCC-CEEEEEeccCcEEEEEEEcCCCCceEEcccccc--------------CCCeEeeEecCc
Confidence 3456677788887 5555554 7889999999876533222233332 356677888874
No 499
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=34.34 E-value=3.1e+02 Score=28.70 Aligned_cols=82 Identities=22% Similarity=0.346 Sum_probs=52.3
Q ss_pred CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC-------ceeeEe-------ecCCC--CcCCCCcceEEEEEcCCCC
Q 014005 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISD-------QCFNIV-------DMKPS--NMDDLTEVITSAEFHPIYC 280 (432)
Q Consensus 218 ~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~-------~~~~~~-------~~~~~--~~~~~~~~v~~~~~~p~~~ 280 (432)
.-.|.|+.-..+|+.+.+| .| +.+|.+.... ++-++- ..-|. ...-|...|..++.+...
T Consensus 181 GinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDqsR- 257 (1263)
T COG5308 181 GINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQSR- 257 (1263)
T ss_pred CceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeecccc-
Confidence 3478888888899999999 55 7777764111 111100 00011 123455678888888776
Q ss_pred cEEEEEeCCCeEEEEEcccccc
Q 014005 281 NLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 281 ~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
.+|.+-+....|+-|.+....+
T Consensus 258 g~ly~Lr~kS~Vray~itkngl 279 (1263)
T COG5308 258 GLLYVLRKKSAVRAYSITKNGL 279 (1263)
T ss_pred cceeeecccceeeeEeeecccc
Confidence 7788888888899888876543
No 500
>PHA02790 Kelch-like protein; Provisional
Probab=33.92 E-value=4.5e+02 Score=25.49 Aligned_cols=147 Identities=6% Similarity=-0.109 Sum_probs=65.4
Q ss_pred CCCEEEEEeCCC-----eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEe
Q 014005 126 NGSMFILSTNDK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIAN 200 (432)
Q Consensus 126 ~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d 200 (432)
++..+++|+.++ .+..||..++.+..+..+.... ... .+ ...++...+.|+......+..||
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r-----------~~~-~~-v~~~~~iYviGG~~~~~sve~yd 337 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPR-----------LYA-SG-VPANNKLYVVGGLPNPTSVERWF 337 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchh-----------hcc-eE-EEECCEEEEECCcCCCCceEEEE
Confidence 455667776542 5667888877665554433211 111 11 12334444445442234566777
Q ss_pred ecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC---CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEc
Q 014005 201 VGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 276 (432)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (432)
...+ ....+..+ ....... ++ ..-+|+..+.| .+ ..+..||.+ ++. .... .+. .........+.
T Consensus 338 p~~n-~W~~~~~l-~~~r~~~-~~-~~~~g~IYviGG~~~~~~~ve~ydp~-~~~-W~~~--~~m--~~~r~~~~~~~-- 405 (480)
T PHA02790 338 HGDA-AWVNMPSL-LKPRCNP-AV-ASINNVIYVIGGHSETDTTTEYLLPN-HDQ-WQFG--PST--YYPHYKSCALV-- 405 (480)
T ss_pred CCCC-eEEECCCC-CCCCccc-EE-EEECCEEEEecCcCCCCccEEEEeCC-CCE-EEeC--CCC--CCccccceEEE--
Confidence 6522 22222222 1111111 12 22356666666 43 346678877 332 2211 111 11111111222
Q ss_pred CCCCcEEEEEeCCCeEEEEEccccc
Q 014005 277 PIYCNLLAYSSSRGFVRLVDMRQSA 301 (432)
Q Consensus 277 p~~~~~l~~~~~dg~i~iwd~~~~~ 301 (432)
-++ .+.+.|+ .+.+||..+++
T Consensus 406 ~~~-~IYv~GG---~~e~ydp~~~~ 426 (480)
T PHA02790 406 FGR-RLFLVGR---NAEFYCESSNT 426 (480)
T ss_pred ECC-EEEEECC---ceEEecCCCCc
Confidence 244 6666664 56788887654
Done!