Query 014005
Match_columns 432
No_of_seqs 444 out of 2155
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 03:46:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 4.4E-42 1.5E-46 321.7 34.3 281 28-405 104-409 (410)
2 3ow8_A WD repeat-containing pr 100.0 1.3E-41 4.5E-46 307.7 33.4 282 29-405 29-319 (321)
3 1got_B GT-beta; complex (GTP-b 100.0 2.3E-40 8E-45 302.3 33.8 283 28-404 51-340 (340)
4 2ynn_A Coatomer subunit beta'; 100.0 8.2E-40 2.8E-44 293.9 34.1 252 30-366 11-271 (304)
5 3frx_A Guanine nucleotide-bind 100.0 8.4E-39 2.9E-43 289.3 35.0 291 29-405 14-315 (319)
6 4gqb_B Methylosome protein 50; 100.0 1.4E-39 4.6E-44 296.8 29.8 302 29-413 27-337 (344)
7 4g56_B MGC81050 protein; prote 100.0 1.7E-39 6E-44 298.3 29.4 302 8-405 25-341 (357)
8 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.9E-39 3E-43 292.4 33.5 298 30-406 13-334 (345)
9 2pbi_B Guanine nucleotide-bind 100.0 7.3E-39 2.5E-43 293.9 33.0 284 28-404 60-354 (354)
10 3iz6_a 40S ribosomal protein R 100.0 3.6E-39 1.2E-43 299.1 29.3 292 28-405 62-373 (380)
11 3ow8_A WD repeat-containing pr 100.0 3.4E-38 1.1E-42 285.3 31.3 265 4-355 53-319 (321)
12 1erj_A Transcriptional repress 100.0 9.1E-38 3.1E-42 290.9 33.8 307 29-405 61-387 (393)
13 1vyh_C Platelet-activating fac 100.0 3E-38 1E-42 295.7 29.2 263 4-355 125-409 (410)
14 2xzm_R RACK1; ribosome, transl 100.0 6.1E-37 2.1E-41 280.1 35.1 297 29-405 18-338 (343)
15 4ery_A WD repeat-containing pr 100.0 3.9E-37 1.3E-41 277.6 32.5 284 29-405 20-310 (312)
16 4gqb_B Methylosome protein 50; 100.0 2.3E-37 7.8E-42 282.1 31.0 245 29-355 79-329 (344)
17 3dw8_B Serine/threonine-protei 100.0 5E-37 1.7E-41 291.0 33.3 311 6-355 4-371 (447)
18 2hes_X YDR267CP; beta-propelle 100.0 1.6E-36 5.5E-41 275.7 33.7 289 29-405 11-326 (330)
19 2pm7_B Protein transport prote 100.0 9.8E-37 3.4E-41 272.9 31.8 252 29-355 6-283 (297)
20 1k8k_C P40, ARP2/3 complex 41 100.0 8.4E-37 2.9E-41 282.2 31.7 248 31-355 7-272 (372)
21 4aow_A Guanine nucleotide-bind 100.0 7.1E-36 2.4E-40 272.4 37.0 295 28-405 34-335 (340)
22 1got_B GT-beta; complex (GTP-b 100.0 9.4E-37 3.2E-41 278.5 31.0 265 6-354 74-340 (340)
23 1nr0_A Actin interacting prote 100.0 5.7E-36 1.9E-40 294.6 36.8 301 28-406 55-396 (611)
24 3bg1_A Protein SEC13 homolog; 100.0 4.2E-37 1.4E-41 277.8 25.7 254 29-355 10-291 (316)
25 2ymu_A WD-40 repeat protein; u 100.0 4.3E-36 1.5E-40 294.0 33.4 274 29-404 300-577 (577)
26 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.9E-36 2E-40 273.7 31.0 277 5-355 34-333 (345)
27 1nr0_A Actin interacting prote 100.0 4.7E-36 1.6E-40 295.2 31.8 248 30-362 16-278 (611)
28 3dm0_A Maltose-binding peripla 100.0 5.1E-36 1.8E-40 299.6 32.5 298 28-406 378-692 (694)
29 3dwl_C Actin-related protein 2 100.0 4.3E-37 1.5E-41 284.9 22.8 253 31-355 10-279 (377)
30 2ynn_A Coatomer subunit beta'; 100.0 6.7E-36 2.3E-40 268.4 29.6 265 4-355 30-300 (304)
31 1gxr_A ESG1, transducin-like e 100.0 6E-35 2.1E-39 265.8 35.3 282 27-404 46-334 (337)
32 2pbi_B Guanine nucleotide-bind 100.0 2.2E-35 7.7E-40 270.7 31.2 270 4-354 81-354 (354)
33 3zwl_B Eukaryotic translation 100.0 7.6E-35 2.6E-39 268.4 33.8 283 28-405 28-344 (369)
34 4g56_B MGC81050 protein; prote 100.0 1.7E-35 5.9E-40 271.6 28.3 247 27-355 89-341 (357)
35 3frx_A Guanine nucleotide-bind 100.0 8.5E-35 2.9E-39 263.0 31.3 270 4-355 35-315 (319)
36 3ei3_B DNA damage-binding prot 100.0 4.2E-35 1.4E-39 272.2 29.2 294 29-405 70-380 (383)
37 1erj_A Transcriptional repress 100.0 9.1E-35 3.1E-39 270.7 31.5 239 32-355 123-387 (393)
38 4e54_B DNA damage-binding prot 100.0 2E-35 6.9E-40 278.9 26.8 291 30-405 117-428 (435)
39 2hes_X YDR267CP; beta-propelle 100.0 1E-34 3.6E-39 263.7 30.3 253 31-355 57-326 (330)
40 2xzm_R RACK1; ribosome, transl 100.0 1.9E-34 6.7E-39 263.5 32.0 279 4-355 44-338 (343)
41 3iz6_a 40S ribosomal protein R 100.0 1.4E-35 4.7E-40 274.9 24.4 281 3-355 82-373 (380)
42 1sq9_A Antiviral protein SKI8; 100.0 6.6E-35 2.2E-39 272.0 28.4 314 29-405 13-393 (397)
43 2ymu_A WD-40 repeat protein; u 100.0 3.5E-34 1.2E-38 280.4 34.2 276 28-405 258-537 (577)
44 3gre_A Serine/threonine-protei 100.0 1.7E-34 5.7E-39 273.0 30.3 278 29-364 60-369 (437)
45 2pm9_A Protein WEB1, protein t 100.0 6.5E-35 2.2E-39 273.7 26.8 269 7-355 43-335 (416)
46 4ery_A WD repeat-containing pr 100.0 2.2E-33 7.5E-38 253.1 31.7 261 7-355 43-310 (312)
47 3f3f_A Nucleoporin SEH1; struc 100.0 1.4E-33 4.7E-38 257.7 30.6 258 29-355 8-335 (351)
48 3jrp_A Fusion protein of prote 100.0 1.2E-33 4.3E-38 261.4 30.5 256 29-355 8-285 (379)
49 2pm9_A Protein WEB1, protein t 100.0 2.3E-34 7.8E-39 270.0 24.6 297 28-406 8-336 (416)
50 1r5m_A SIR4-interacting protei 100.0 1.8E-33 6.3E-38 264.3 30.9 290 31-405 107-423 (425)
51 3vl1_A 26S proteasome regulato 100.0 4.8E-34 1.6E-38 268.3 24.5 276 34-404 58-362 (420)
52 3odt_A Protein DOA1; ubiquitin 100.0 8.8E-33 3E-37 248.9 31.3 273 29-406 15-295 (313)
53 3i2n_A WD repeat-containing pr 100.0 2.1E-33 7.3E-38 257.7 27.6 241 30-355 16-289 (357)
54 1yfq_A Cell cycle arrest prote 100.0 3E-33 1E-37 255.3 27.0 294 30-404 9-321 (342)
55 1r5m_A SIR4-interacting protei 100.0 4.6E-33 1.6E-37 261.6 28.5 291 26-406 39-360 (425)
56 4h5i_A Guanine nucleotide-exch 100.0 1.6E-32 5.3E-37 252.7 31.0 299 32-405 14-341 (365)
57 4a11_B DNA excision repair pro 100.0 4.7E-32 1.6E-36 253.3 33.7 274 29-355 40-363 (408)
58 1gxr_A ESG1, transducin-like e 100.0 7E-32 2.4E-36 245.5 32.8 239 30-355 95-335 (337)
59 3k26_A Polycomb protein EED; W 100.0 3E-33 1E-37 257.6 24.0 303 30-405 16-364 (366)
60 3dm0_A Maltose-binding peripla 100.0 6.2E-33 2.1E-37 277.3 28.0 280 3-355 399-691 (694)
61 4aez_A CDC20, WD repeat-contai 100.0 3E-32 1E-36 254.5 29.0 272 35-406 96-379 (401)
62 1pgu_A Actin interacting prote 100.0 6.7E-32 2.3E-36 266.1 32.3 288 29-406 15-327 (615)
63 3mkq_A Coatomer beta'-subunit; 100.0 4.8E-32 1.6E-36 276.0 32.0 253 29-365 10-270 (814)
64 3i2n_A WD repeat-containing pr 100.0 1.7E-32 5.7E-37 251.7 24.2 274 8-355 43-351 (357)
65 1sq9_A Antiviral protein SKI8; 100.0 7.4E-32 2.5E-36 251.4 28.8 283 6-355 33-393 (397)
66 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-31 5.6E-36 284.0 34.8 249 28-355 611-911 (1249)
67 3k26_A Polycomb protein EED; W 100.0 1E-32 3.5E-37 254.0 21.9 255 30-355 67-364 (366)
68 3v7d_B Cell division control p 100.0 2.2E-31 7.6E-36 253.5 31.8 270 6-355 139-419 (464)
69 2xyi_A Probable histone-bindin 100.0 6.6E-32 2.3E-36 254.4 27.7 264 27-355 123-408 (430)
70 3vl1_A 26S proteasome regulato 100.0 1.9E-31 6.5E-36 250.5 29.9 282 7-355 117-417 (420)
71 1p22_A F-BOX/WD-repeat protein 100.0 3.6E-31 1.2E-35 249.9 31.5 269 30-406 131-413 (435)
72 2pm7_B Protein transport prote 100.0 1.6E-31 5.6E-36 238.9 27.7 253 95-405 3-283 (297)
73 3v7d_B Cell division control p 100.0 3.3E-31 1.1E-35 252.3 31.3 277 29-406 118-420 (464)
74 3jro_A Fusion protein of prote 100.0 5.8E-32 2E-36 271.9 27.2 252 29-355 6-283 (753)
75 4gga_A P55CDC, cell division c 100.0 6.5E-31 2.2E-35 247.0 32.3 275 34-405 107-393 (420)
76 3ei3_B DNA damage-binding prot 100.0 3.9E-32 1.3E-36 252.1 23.6 273 6-355 93-380 (383)
77 3zwl_B Eukaryotic translation 100.0 7.2E-31 2.4E-35 241.8 31.6 272 7-355 52-344 (369)
78 2j04_B YDR362CP, TAU91; beta p 100.0 1E-32 3.4E-37 263.9 19.5 249 27-355 128-426 (524)
79 4aez_A CDC20, WD repeat-contai 100.0 1.6E-31 5.4E-36 249.6 27.3 241 29-355 131-378 (401)
80 4h5i_A Guanine nucleotide-exch 100.0 4.3E-32 1.5E-36 249.7 22.9 251 29-355 70-341 (365)
81 4gga_A P55CDC, cell division c 100.0 3.7E-31 1.3E-35 248.6 29.5 241 30-355 145-393 (420)
82 1k8k_C P40, ARP2/3 complex 41 100.0 3.5E-31 1.2E-35 244.4 28.2 262 29-355 49-359 (372)
83 2j04_B YDR362CP, TAU91; beta p 100.0 8.6E-32 2.9E-36 257.5 24.5 289 6-355 180-515 (524)
84 2aq5_A Coronin-1A; WD40 repeat 100.0 2.3E-31 7.8E-36 248.6 26.3 278 6-355 54-340 (402)
85 4aow_A Guanine nucleotide-bind 100.0 9.1E-31 3.1E-35 238.6 29.4 275 3-355 55-335 (340)
86 4e54_B DNA damage-binding prot 100.0 3.9E-32 1.3E-36 256.5 19.4 274 5-355 138-428 (435)
87 2oaj_A Protein SNI1; WD40 repe 100.0 3.2E-30 1.1E-34 263.0 32.3 176 7-247 37-241 (902)
88 3mmy_A MRNA export factor; mRN 100.0 2.4E-30 8.1E-35 238.2 28.5 295 29-404 36-343 (368)
89 3gre_A Serine/threonine-protei 100.0 6.5E-31 2.2E-35 248.3 25.1 301 4-354 81-437 (437)
90 4ggc_A P55CDC, cell division c 100.0 5.8E-30 2E-34 231.0 29.2 278 34-405 27-313 (318)
91 3sfz_A APAF-1, apoptotic pepti 100.0 2.3E-31 8E-36 282.8 23.0 284 31-405 960-1247(1249)
92 3dw8_B Serine/threonine-protei 100.0 6.9E-30 2.4E-34 241.9 30.7 280 114-406 29-372 (447)
93 3bg1_A Protein SEC13 homolog; 100.0 3.8E-31 1.3E-35 238.7 20.3 251 96-405 8-291 (316)
94 3mkq_A Coatomer beta'-subunit; 100.0 1.7E-29 5.7E-34 257.3 34.8 261 8-355 34-300 (814)
95 3odt_A Protein DOA1; ubiquitin 100.0 8E-30 2.7E-34 229.4 28.8 257 6-355 36-294 (313)
96 3vu4_A KMHSV2; beta-propeller 100.0 1E-29 3.5E-34 233.1 29.7 230 29-355 16-269 (355)
97 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.2E-29 4.1E-34 240.3 30.4 271 28-406 114-390 (445)
98 3dwl_C Actin-related protein 2 100.0 5.1E-31 1.8E-35 244.0 20.2 282 7-355 31-377 (377)
99 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.8E-29 1.3E-33 236.8 33.4 296 6-405 136-440 (445)
100 4ggc_A P55CDC, cell division c 100.0 1.7E-29 5.8E-34 227.9 29.2 242 29-355 64-313 (318)
101 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.3E-29 4.5E-34 240.3 29.5 213 114-355 103-337 (450)
102 1pgu_A Actin interacting prote 100.0 2.2E-29 7.5E-34 248.1 31.5 263 27-366 58-340 (615)
103 3jrp_A Fusion protein of prote 100.0 1.1E-29 3.8E-34 234.8 26.8 256 93-405 3-285 (379)
104 2j04_A TAU60, YPL007P, hypothe 100.0 9.2E-30 3.2E-34 238.0 22.9 224 32-355 15-252 (588)
105 4gq1_A NUP37; propeller, trans 100.0 1.8E-30 6E-35 241.6 18.2 246 34-355 91-387 (393)
106 2aq5_A Coronin-1A; WD40 repeat 100.0 3.9E-29 1.3E-33 233.5 26.8 244 35-355 37-297 (402)
107 3lrv_A PRE-mRNA-splicing facto 100.0 3.4E-29 1.2E-33 228.7 24.3 232 39-355 43-290 (343)
108 1p22_A F-BOX/WD-repeat protein 100.0 2.3E-28 7.9E-33 230.7 26.9 235 29-355 170-412 (435)
109 2oaj_A Protein SNI1; WD40 repe 100.0 1.5E-28 5.2E-33 250.6 27.3 258 29-355 14-310 (902)
110 1yfq_A Cell cycle arrest prote 100.0 4.2E-29 1.4E-33 227.8 20.3 266 7-354 31-321 (342)
111 2j04_A TAU60, YPL007P, hypothe 100.0 2.6E-28 9E-33 228.2 25.9 265 11-347 66-350 (588)
112 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.5E-28 2.6E-32 228.2 29.2 251 30-355 100-389 (450)
113 2xyi_A Probable histone-bindin 100.0 8.1E-28 2.8E-32 226.5 29.1 246 114-406 129-409 (430)
114 3mmy_A MRNA export factor; mRN 100.0 8.8E-29 3E-33 227.7 21.5 264 6-355 61-344 (368)
115 1l0q_A Surface layer protein; 100.0 2.5E-26 8.5E-31 213.6 35.5 268 3-365 6-286 (391)
116 4a11_B DNA excision repair pro 100.0 5.2E-28 1.8E-32 225.9 23.5 229 95-355 37-274 (408)
117 3f3f_A Nucleoporin SEH1; struc 100.0 2.3E-27 8E-32 216.3 26.0 216 95-355 5-247 (351)
118 3jro_A Fusion protein of prote 100.0 5.1E-28 1.7E-32 243.3 23.1 255 95-406 3-284 (753)
119 3lrv_A PRE-mRNA-splicing facto 100.0 4E-27 1.4E-31 215.0 24.0 231 124-404 45-289 (343)
120 2w18_A PALB2, fancn, partner a 100.0 1.3E-26 4.6E-31 203.8 25.8 198 114-355 112-355 (356)
121 3bws_A Protein LP49; two-domai 100.0 8.1E-27 2.8E-31 219.9 25.5 283 29-405 119-430 (433)
122 1l0q_A Surface layer protein; 99.9 3.8E-25 1.3E-29 205.5 32.0 261 45-406 3-274 (391)
123 3bws_A Protein LP49; two-domai 99.9 4.2E-25 1.4E-29 208.1 30.6 239 29-355 166-430 (433)
124 2w18_A PALB2, fancn, partner a 99.9 3.9E-26 1.3E-30 200.8 20.3 219 32-297 111-355 (356)
125 4gq1_A NUP37; propeller, trans 99.9 3.1E-25 1E-29 206.2 21.8 244 124-401 98-384 (393)
126 3vu4_A KMHSV2; beta-propeller 99.9 4.5E-24 1.5E-28 195.5 26.6 245 34-355 60-334 (355)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.2E-22 1.4E-26 186.2 29.0 232 44-365 143-397 (415)
128 1ri6_A Putative isomerase YBHE 99.9 3.2E-21 1.1E-25 175.4 29.0 277 6-355 12-306 (343)
129 1nir_A Nitrite reductase; hemo 99.9 5.4E-21 1.8E-25 184.2 30.6 253 34-355 180-456 (543)
130 2ojh_A Uncharacterized protein 99.9 9.2E-22 3.2E-26 174.9 22.4 235 27-345 36-289 (297)
131 2ecf_A Dipeptidyl peptidase IV 99.9 9.7E-22 3.3E-26 198.0 24.5 249 32-355 36-365 (741)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.1E-21 1.1E-25 180.3 25.9 222 27-339 173-409 (415)
133 1xfd_A DIP, dipeptidyl aminope 99.9 2.6E-21 9E-26 194.3 23.5 245 34-354 18-341 (723)
134 2ojh_A Uncharacterized protein 99.9 2.1E-20 7.2E-25 166.1 25.8 223 49-355 17-256 (297)
135 3hfq_A Uncharacterized protein 99.9 2.4E-20 8.2E-25 170.3 26.4 267 29-355 36-315 (347)
136 3u4y_A Uncharacterized protein 99.9 2.1E-19 7.2E-24 162.8 32.5 237 38-355 3-250 (331)
137 1nir_A Nitrite reductase; hemo 99.9 3.4E-20 1.2E-24 178.6 27.4 235 39-355 144-400 (543)
138 2oit_A Nucleoporin 214KDA; NH2 99.9 5.4E-21 1.9E-25 179.3 19.5 227 32-355 36-276 (434)
139 3u4y_A Uncharacterized protein 99.9 1.4E-19 4.9E-24 163.9 27.0 248 32-355 40-302 (331)
140 3vgz_A Uncharacterized protein 99.9 4E-19 1.4E-23 162.3 28.6 252 30-355 38-301 (353)
141 1ri6_A Putative isomerase YBHE 99.9 2E-18 6.8E-23 156.9 32.4 212 114-356 38-261 (343)
142 1jmx_B Amine dehydrogenase; ox 99.8 4.7E-19 1.6E-23 161.5 26.0 255 37-364 4-335 (349)
143 3o4h_A Acylamino-acid-releasin 99.8 4.3E-20 1.5E-24 180.6 20.3 231 32-355 21-274 (582)
144 2z3z_A Dipeptidyl aminopeptida 99.8 1.6E-19 5.4E-24 180.9 24.5 255 30-355 118-433 (706)
145 1pby_B Quinohemoprotein amine 99.8 1.3E-18 4.5E-23 157.7 26.7 243 45-364 2-320 (337)
146 2z3z_A Dipeptidyl aminopeptida 99.8 8.3E-19 2.8E-23 175.6 26.4 253 33-355 82-389 (706)
147 2ecf_A Dipeptidyl peptidase IV 99.8 4.6E-19 1.6E-23 178.4 22.5 247 34-355 110-411 (741)
148 1k32_A Tricorn protease; prote 99.8 7.4E-19 2.5E-23 183.2 22.9 245 29-355 241-500 (1045)
149 3vgz_A Uncharacterized protein 99.8 7.5E-18 2.6E-22 153.8 27.0 235 32-345 88-331 (353)
150 2oit_A Nucleoporin 214KDA; NH2 99.8 2.9E-18 1E-22 160.7 24.7 178 29-300 89-279 (434)
151 1z68_A Fibroblast activation p 99.8 2.7E-19 9.4E-24 179.5 17.9 241 37-355 20-344 (719)
152 3scy_A Hypothetical bacterial 99.8 2.1E-17 7.3E-22 151.5 29.1 262 31-355 48-335 (361)
153 3hfq_A Uncharacterized protein 99.8 4.6E-17 1.6E-21 148.4 30.4 213 114-355 40-269 (347)
154 1k32_A Tricorn protease; prote 99.8 7.4E-18 2.5E-22 175.7 27.1 245 29-355 200-459 (1045)
155 1xfd_A DIP, dipeptidyl aminope 99.8 3.7E-18 1.3E-22 171.4 21.3 254 34-355 62-391 (723)
156 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.7E-17 9.3E-22 151.1 25.1 252 33-355 40-339 (365)
157 4a5s_A Dipeptidyl peptidase 4 99.8 2.2E-17 7.5E-22 165.9 25.3 246 34-355 18-351 (740)
158 3pe7_A Oligogalacturonate lyas 99.8 1.2E-16 4.1E-21 147.9 22.4 237 38-355 41-327 (388)
159 1q7f_A NHL, brain tumor CG1071 99.8 1.1E-15 3.7E-20 135.3 27.3 258 12-355 11-278 (286)
160 3fvz_A Peptidyl-glycine alpha- 99.7 6.7E-16 2.3E-20 139.6 24.9 246 33-355 24-320 (329)
161 3scy_A Hypothetical bacterial 99.7 5.1E-15 1.7E-19 135.6 30.8 212 114-355 50-289 (361)
162 3o4h_A Acylamino-acid-releasin 99.7 2.2E-16 7.6E-21 154.3 21.4 230 30-355 61-313 (582)
163 1pby_B Quinohemoprotein amine 99.7 1.1E-15 3.9E-20 138.2 23.5 208 34-312 35-319 (337)
164 1jof_A Carboxy-CIS,CIS-muconat 99.7 4.2E-14 1.4E-18 129.7 33.6 216 114-355 40-289 (365)
165 3azo_A Aminopeptidase; POP fam 99.7 2.7E-15 9.2E-20 149.0 25.5 257 30-355 21-321 (662)
166 1z68_A Fibroblast activation p 99.7 2.2E-16 7.6E-21 158.3 16.9 249 35-355 62-389 (719)
167 1jmx_B Amine dehydrogenase; ox 99.7 3.3E-15 1.1E-19 135.9 20.9 203 34-302 44-328 (349)
168 3pe7_A Oligogalacturonate lyas 99.7 9.7E-16 3.3E-20 141.8 17.6 250 34-355 82-380 (388)
169 3e5z_A Putative gluconolactona 99.7 4.5E-14 1.6E-18 125.5 27.5 240 31-355 26-284 (296)
170 3c5m_A Oligogalacturonate lyas 99.7 4E-15 1.4E-19 137.9 21.4 244 34-355 37-327 (396)
171 3azo_A Aminopeptidase; POP fam 99.6 8.6E-14 2.9E-18 138.2 27.9 198 114-355 130-367 (662)
172 2xdw_A Prolyl endopeptidase; a 99.6 6.4E-14 2.2E-18 140.1 25.5 244 32-355 124-412 (710)
173 2dg1_A DRP35, lactonase; beta 99.6 5.7E-13 1.9E-17 120.5 28.9 244 30-344 42-296 (333)
174 1rwi_B Serine/threonine-protei 99.6 4E-13 1.4E-17 117.5 25.2 234 34-355 25-262 (270)
175 2bkl_A Prolyl endopeptidase; m 99.6 1.9E-13 6.7E-18 136.2 24.3 242 31-355 119-395 (695)
176 3c5m_A Oligogalacturonate lyas 99.6 2E-14 7E-19 133.1 15.5 253 37-355 85-380 (396)
177 1q7f_A NHL, brain tumor CG1071 99.6 2.5E-12 8.6E-17 113.5 27.6 243 114-405 30-278 (286)
178 2oiz_A Aromatic amine dehydrog 99.6 2.3E-12 7.8E-17 117.8 27.0 237 43-355 14-332 (361)
179 4a5s_A Dipeptidyl peptidase 4 99.6 1.9E-13 6.5E-18 137.3 21.3 208 114-355 17-292 (740)
180 2gop_A Trilobed protease; beta 99.6 8.1E-13 2.8E-17 120.1 23.3 221 33-355 59-329 (347)
181 2oiz_A Aromatic amine dehydrog 99.5 1.7E-12 5.8E-17 118.6 24.1 237 37-340 54-360 (361)
182 3dsm_A Uncharacterized protein 99.5 1.5E-11 5.1E-16 110.8 27.9 248 33-363 44-310 (328)
183 2gop_A Trilobed protease; beta 99.5 2.5E-12 8.6E-17 116.9 23.0 222 29-355 11-289 (347)
184 2dg1_A DRP35, lactonase; beta 99.5 1.6E-12 5.5E-17 117.5 20.5 249 33-363 6-271 (333)
185 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.8E-11 6.2E-16 109.4 26.8 241 34-355 19-297 (314)
186 1yr2_A Prolyl oligopeptidase; 99.5 5.2E-12 1.8E-16 126.8 24.5 241 33-355 163-439 (741)
187 3fvz_A Peptidyl-glycine alpha- 99.5 1.3E-11 4.5E-16 111.3 23.3 248 114-405 24-320 (329)
188 2z2n_A Virginiamycin B lyase; 99.5 4.1E-10 1.4E-14 99.6 32.6 238 32-355 14-253 (299)
189 3g4e_A Regucalcin; six bladed 99.4 1.1E-10 3.8E-15 103.5 26.1 231 34-344 14-258 (297)
190 3no2_A Uncharacterized protein 99.4 3.6E-11 1.2E-15 105.3 22.0 195 43-363 4-204 (276)
191 1qks_A Cytochrome CD1 nitrite 99.4 2.8E-10 9.5E-15 109.5 29.3 260 30-356 194-476 (567)
192 3hrp_A Uncharacterized protein 99.4 2.7E-10 9.1E-15 105.7 27.6 257 33-355 131-408 (409)
193 2xdw_A Prolyl endopeptidase; a 99.4 2.8E-10 9.7E-15 113.7 28.7 212 114-364 125-378 (710)
194 2z2n_A Virginiamycin B lyase; 99.4 1.3E-09 4.5E-14 96.4 29.7 233 32-355 56-293 (299)
195 3e5z_A Putative gluconolactona 99.4 7.5E-11 2.6E-15 104.6 21.3 202 114-364 28-255 (296)
196 2qc5_A Streptogramin B lactona 99.4 5.3E-09 1.8E-13 92.5 31.8 237 32-355 19-258 (300)
197 1qks_A Cytochrome CD1 nitrite 99.3 8.5E-10 2.9E-14 106.1 27.8 233 40-355 163-419 (567)
198 2bkl_A Prolyl endopeptidase; m 99.3 3.8E-10 1.3E-14 112.5 25.6 201 114-355 121-347 (695)
199 1rwi_B Serine/threonine-protei 99.3 2.9E-10 9.9E-15 99.2 21.5 198 33-301 67-266 (270)
200 2ghs_A AGR_C_1268P; regucalcin 99.3 4.3E-09 1.5E-13 94.6 28.3 228 35-344 51-288 (326)
201 3dsm_A Uncharacterized protein 99.3 1.7E-09 5.7E-14 97.4 24.4 215 31-312 82-310 (328)
202 3iuj_A Prolyl endopeptidase; h 99.3 4.4E-10 1.5E-14 111.8 21.8 240 31-355 127-403 (693)
203 3dr2_A Exported gluconolactona 99.3 3.4E-09 1.2E-13 94.3 25.4 237 30-354 42-303 (305)
204 2qc5_A Streptogramin B lactona 99.3 1.1E-08 3.7E-13 90.4 28.3 237 32-355 61-298 (300)
205 1yr2_A Prolyl oligopeptidase; 99.2 4.4E-09 1.5E-13 105.6 27.2 198 114-355 163-391 (741)
206 1xip_A Nucleoporin NUP159; bet 99.2 3.4E-10 1.2E-14 102.7 17.1 189 114-344 38-230 (388)
207 2mad_H Methylamine dehydrogena 99.2 1.4E-08 4.7E-13 92.8 27.5 250 37-360 70-356 (373)
208 3sjl_D Methylamine dehydrogena 99.2 1.4E-09 4.9E-14 98.3 19.6 255 37-365 82-374 (386)
209 1xip_A Nucleoporin NUP159; bet 99.2 2E-10 7E-15 104.2 13.2 187 34-287 39-232 (388)
210 3c75_H MADH, methylamine dehyd 99.2 1.8E-08 6.3E-13 92.7 25.4 248 42-361 82-409 (426)
211 3no2_A Uncharacterized protein 99.2 7.7E-09 2.6E-13 90.3 21.7 192 34-346 38-231 (276)
212 2qe8_A Uncharacterized protein 99.1 1.3E-08 4.5E-13 92.1 21.9 249 33-346 17-309 (343)
213 2mad_H Methylamine dehydrogena 99.1 7.2E-07 2.5E-11 81.4 31.5 290 39-406 27-349 (373)
214 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 3.8E-08 1.3E-12 87.6 20.9 203 32-299 70-299 (314)
215 3g4e_A Regucalcin; six bladed 99.0 3.1E-07 1.1E-11 81.2 25.7 204 115-364 14-239 (297)
216 3sjl_D Methylamine dehydrogena 99.0 4.9E-07 1.7E-11 81.7 26.6 290 38-406 38-362 (386)
217 3hrp_A Uncharacterized protein 99.0 1.8E-07 6.2E-12 86.6 23.6 223 114-363 131-362 (409)
218 1mda_H Methylamine dehydrogena 99.0 8.4E-08 2.9E-12 86.8 20.5 214 118-365 69-357 (368)
219 3iuj_A Prolyl endopeptidase; h 98.9 1.1E-07 3.8E-12 94.5 21.0 206 114-362 129-366 (693)
220 3dr2_A Exported gluconolactona 98.8 5.4E-07 1.9E-11 79.9 21.0 204 114-364 45-276 (305)
221 2ece_A 462AA long hypothetical 98.8 9.8E-07 3.3E-11 80.5 22.6 208 116-346 140-399 (462)
222 2ghs_A AGR_C_1268P; regucalcin 98.8 1.8E-06 6.1E-11 77.3 23.1 190 31-287 88-290 (326)
223 3c75_H MADH, methylamine dehyd 98.8 3.3E-07 1.1E-11 84.4 18.4 222 37-310 122-409 (426)
224 2hz6_A Endoplasmic reticulum t 98.8 1.7E-08 5.8E-13 92.2 9.1 184 43-302 8-195 (369)
225 1mda_H Methylamine dehydrogena 98.7 6.3E-07 2.2E-11 81.0 18.4 76 224-312 269-355 (368)
226 2iwa_A Glutamine cyclotransfer 98.7 3.5E-06 1.2E-10 72.0 20.7 204 116-355 23-235 (266)
227 1fwx_A Nitrous oxide reductase 98.7 5.2E-07 1.8E-11 85.2 16.8 240 42-355 99-429 (595)
228 2hz6_A Endoplasmic reticulum t 98.7 1.8E-08 6.1E-13 92.1 6.6 177 125-355 7-190 (369)
229 1npe_A Nidogen, entactin; glyc 98.7 3.8E-05 1.3E-09 66.4 27.3 195 114-355 36-236 (267)
230 2iwa_A Glutamine cyclotransfer 98.7 1.2E-05 4.2E-10 68.7 22.8 204 34-300 22-238 (266)
231 1npe_A Nidogen, entactin; glyc 98.7 2.5E-05 8.6E-10 67.6 25.5 222 34-340 37-263 (267)
232 1yiq_A Quinohemoprotein alcoho 98.6 1.2E-05 4.2E-10 79.5 25.7 159 127-302 121-341 (689)
233 2ece_A 462AA long hypothetical 98.6 7.4E-06 2.5E-10 74.8 20.6 199 36-287 141-399 (462)
234 2qe8_A Uncharacterized protein 98.6 4E-06 1.4E-10 75.6 18.7 217 30-292 64-314 (343)
235 3hxj_A Pyrrolo-quinoline quino 98.6 1.2E-05 4.1E-10 71.8 21.3 185 115-355 138-322 (330)
236 1kb0_A Quinohemoprotein alcoho 98.6 1.5E-05 5.2E-10 78.6 23.3 148 195-365 284-518 (677)
237 3nol_A Glutamine cyclotransfer 98.5 2.4E-05 8.3E-10 66.1 20.8 185 34-287 44-243 (262)
238 3nol_A Glutamine cyclotransfer 98.5 1.5E-05 5E-10 67.4 19.2 197 114-346 43-244 (262)
239 2fp8_A Strictosidine synthase; 98.5 3.7E-05 1.3E-09 68.5 22.3 252 34-355 20-311 (322)
240 3mbr_X Glutamine cyclotransfer 98.5 7.4E-05 2.5E-09 62.6 21.9 199 114-346 21-223 (243)
241 3hxj_A Pyrrolo-quinoline quino 98.5 3.3E-06 1.1E-10 75.5 14.9 240 4-355 3-242 (330)
242 3nok_A Glutaminyl cyclase; bet 98.5 4.5E-05 1.5E-09 64.5 20.6 185 34-286 56-253 (268)
243 1yiq_A Quinohemoprotein alcoho 98.4 5.3E-05 1.8E-09 74.9 23.2 59 289-365 454-516 (689)
244 3qqz_A Putative uncharacterize 98.4 0.00025 8.4E-09 60.2 23.9 215 114-354 27-250 (255)
245 3nok_A Glutaminyl cyclase; bet 98.4 7.3E-05 2.5E-09 63.2 20.4 196 114-346 55-254 (268)
246 2p4o_A Hypothetical protein; p 98.4 0.00022 7.5E-09 63.0 24.2 228 33-345 32-275 (306)
247 3q7m_A Lipoprotein YFGL, BAMB; 98.4 0.00031 1.1E-08 64.0 25.6 182 126-355 102-294 (376)
248 1kb0_A Quinohemoprotein alcoho 98.3 7.1E-05 2.4E-09 73.9 21.9 191 117-344 246-537 (677)
249 2xe4_A Oligopeptidase B; hydro 98.3 7.5E-05 2.6E-09 74.8 22.4 198 34-297 175-398 (751)
250 3mbr_X Glutamine cyclotransfer 98.3 0.00027 9.1E-09 59.2 21.8 188 32-286 20-222 (243)
251 3qqz_A Putative uncharacterize 98.2 0.0016 5.3E-08 55.3 24.9 211 33-297 27-251 (255)
252 2fp8_A Strictosidine synthase; 98.2 0.00035 1.2E-08 62.1 21.9 215 115-364 20-278 (322)
253 3v65_B Low-density lipoprotein 98.2 0.0012 3.9E-08 60.4 25.3 196 114-355 116-316 (386)
254 3q7m_A Lipoprotein YFGL, BAMB; 98.2 0.00022 7.4E-09 65.0 20.3 150 127-302 188-340 (376)
255 4hw6_A Hypothetical protein, I 98.2 0.0022 7.4E-08 59.5 27.1 252 34-355 140-431 (433)
256 1fwx_A Nitrous oxide reductase 98.2 8.6E-05 2.9E-09 70.3 17.5 198 126-355 100-359 (595)
257 3tc9_A Hypothetical hydrolase; 98.2 0.0014 4.8E-08 60.8 25.7 252 34-355 138-428 (430)
258 3v64_C Agrin; beta propeller, 98.2 0.0015 5E-08 58.8 25.2 196 114-355 73-273 (349)
259 1kv9_A Type II quinohemoprotei 98.1 0.0024 8.1E-08 62.9 27.1 159 127-302 117-336 (668)
260 3v9f_A Two-component system se 98.1 0.01 3.6E-07 59.6 31.6 243 32-355 362-609 (781)
261 4a2l_A BT_4663, two-component 98.0 0.015 5E-07 58.7 34.1 251 32-355 356-612 (795)
262 3v64_C Agrin; beta propeller, 98.0 0.0041 1.4E-07 55.9 25.4 202 33-302 73-278 (349)
263 3v65_B Low-density lipoprotein 98.0 0.0019 6.5E-08 59.0 22.8 203 32-302 115-321 (386)
264 2p4o_A Hypothetical protein; p 98.0 0.0034 1.2E-07 55.3 23.3 202 114-355 32-240 (306)
265 4a2l_A BT_4663, two-component 98.0 0.01 3.5E-07 59.9 29.1 257 32-355 309-569 (795)
266 3p5b_L Low density lipoprotein 97.9 0.012 4E-07 54.0 27.2 210 31-302 110-323 (400)
267 1w6s_A Methanol dehydrogenase 97.8 0.0099 3.4E-07 57.4 25.1 156 130-303 124-346 (599)
268 1ijq_A LDL receptor, low-densi 97.8 0.014 4.9E-07 51.5 25.9 209 32-302 29-241 (316)
269 1k3i_A Galactose oxidase precu 97.8 0.0027 9.2E-08 62.5 21.7 206 116-355 245-495 (656)
270 1ijq_A LDL receptor, low-densi 97.8 0.015 5E-07 51.4 27.3 198 114-355 30-236 (316)
271 2xbg_A YCF48-like protein; pho 97.8 0.016 5.5E-07 51.4 25.4 156 171-354 163-319 (327)
272 1k3i_A Galactose oxidase precu 97.8 0.0028 9.7E-08 62.4 21.2 243 35-347 245-530 (656)
273 3sov_A LRP-6, low-density lipo 97.8 0.017 5.9E-07 51.0 24.6 203 33-302 35-241 (318)
274 1kv9_A Type II quinohemoprotei 97.8 0.0023 7.9E-08 63.0 20.0 59 289-365 437-499 (668)
275 2xe4_A Oligopeptidase B; hydro 97.7 0.011 3.7E-07 59.2 24.6 160 115-299 175-354 (751)
276 2ad6_A Methanol dehydrogenase 97.7 0.038 1.3E-06 53.2 27.0 159 127-302 115-338 (571)
277 1flg_A Protein (quinoprotein e 97.7 0.04 1.4E-06 53.2 26.7 62 239-302 291-358 (582)
278 3m0c_C LDL receptor, low-densi 97.7 0.018 6.1E-07 57.5 24.7 210 31-302 422-635 (791)
279 3p5b_L Low density lipoprotein 97.7 0.035 1.2E-06 50.8 25.0 197 114-355 112-318 (400)
280 3sov_A LRP-6, low-density lipo 97.6 0.028 9.5E-07 49.6 24.9 195 114-355 35-236 (318)
281 1n7d_A LDL receptor, low-densi 97.6 0.00088 3E-08 66.3 15.0 160 116-302 455-617 (699)
282 3v9f_A Two-component system se 97.6 0.05 1.7E-06 54.7 27.1 264 32-355 257-522 (781)
283 2ad6_A Methanol dehydrogenase 97.6 0.026 8.8E-07 54.4 23.6 59 289-365 443-505 (571)
284 2xbg_A YCF48-like protein; pho 97.5 0.053 1.8E-06 48.1 27.4 113 215-350 159-272 (327)
285 3m0c_C LDL receptor, low-densi 97.4 0.071 2.4E-06 53.3 25.5 159 114-301 424-591 (791)
286 4a0p_A LRP6, LRP-6, low-densit 97.4 0.11 3.7E-06 50.6 25.9 201 32-302 36-240 (628)
287 2p9w_A MAL S 1 allergenic prot 97.4 0.01 3.4E-07 52.0 16.6 76 220-299 138-215 (334)
288 3tc9_A Hypothetical hydrolase; 97.3 0.0083 2.8E-07 55.6 16.6 111 218-355 178-299 (430)
289 3pbp_A Nucleoporin NUP82; beta 97.3 0.042 1.4E-06 49.7 20.1 124 220-353 67-208 (452)
290 4hw6_A Hypothetical protein, I 97.3 0.053 1.8E-06 50.1 21.6 211 115-355 140-372 (433)
291 2ism_A Putative oxidoreductase 97.3 0.089 3.1E-06 47.1 23.0 61 269-345 269-332 (352)
292 3amr_A 3-phytase; beta-propell 97.3 0.088 3E-06 46.5 21.3 196 126-364 39-274 (355)
293 3a9g_A Putative uncharacterize 97.2 0.1 3.5E-06 46.8 23.7 64 268-345 259-329 (354)
294 1flg_A Protein (quinoprotein e 97.2 0.037 1.3E-06 53.3 20.2 79 238-344 465-546 (582)
295 1w6s_A Methanol dehydrogenase 97.2 0.072 2.5E-06 51.4 22.0 60 194-257 278-350 (599)
296 3kya_A Putative phosphatase; s 97.2 0.15 5.2E-06 47.6 25.6 174 173-355 249-473 (496)
297 1n7d_A LDL receptor, low-densi 97.2 0.0039 1.3E-07 61.6 13.0 198 114-355 406-612 (699)
298 3s94_A LRP-6, low-density lipo 97.1 0.16 5.5E-06 49.3 23.8 204 32-302 39-246 (619)
299 3amr_A 3-phytase; beta-propell 97.1 0.13 4.4E-06 45.5 21.9 147 136-298 98-262 (355)
300 3kya_A Putative phosphatase; s 97.0 0.047 1.6E-06 51.0 17.9 116 220-355 187-339 (496)
301 2p9w_A MAL S 1 allergenic prot 96.8 0.14 4.8E-06 44.8 18.0 119 221-355 65-213 (334)
302 3sre_A PON1, serum paraoxonase 96.8 0.26 9E-06 43.9 23.5 111 219-355 165-296 (355)
303 3ei3_A DNA damage-binding prot 96.8 0.68 2.3E-05 48.4 27.4 34 32-65 553-593 (1158)
304 3sre_A PON1, serum paraoxonase 96.7 0.31 1E-05 43.5 20.1 93 238-355 138-250 (355)
305 4a0p_A LRP6, LRP-6, low-densit 96.4 0.74 2.5E-05 44.7 26.8 194 114-355 37-235 (628)
306 3s94_A LRP-6, low-density lipo 96.2 0.95 3.3E-05 43.9 24.9 157 33-247 349-509 (619)
307 2xzh_A Clathrin heavy chain 1; 96.2 0.54 1.9E-05 41.0 25.8 203 39-302 73-293 (365)
308 2g8s_A Glucose/sorbosone dehyd 96.2 0.64 2.2E-05 41.5 22.8 73 268-355 271-350 (353)
309 3pbp_A Nucleoporin NUP82; beta 96.0 0.84 2.9E-05 41.4 18.9 156 125-295 30-208 (452)
310 1tl2_A L10, protein (tachylect 95.4 0.86 3E-05 37.2 15.7 69 219-292 135-203 (236)
311 1bpo_A Protein (clathrin); cla 95.4 1.5 5.2E-05 39.9 26.4 204 39-302 72-292 (494)
312 2g8s_A Glucose/sorbosone dehyd 95.2 1.4 4.8E-05 39.2 17.3 30 114-145 18-47 (353)
313 2vpj_A Kelch-like protein 12; 94.9 1.7 5.8E-05 37.4 18.3 150 126-301 112-280 (301)
314 2vpj_A Kelch-like protein 12; 94.6 1.9 6.6E-05 37.1 20.8 150 126-301 62-233 (301)
315 3ii7_A Kelch-like protein 7; p 94.5 2.1 7.1E-05 37.0 19.0 150 126-301 101-274 (306)
316 3a9g_A Putative uncharacterize 94.5 2.5 8.6E-05 37.6 20.3 110 114-236 29-152 (354)
317 3das_A Putative oxidoreductase 94.4 1.7 5.8E-05 38.5 15.3 118 216-344 29-156 (347)
318 3ei3_A DNA damage-binding prot 94.2 6.4 0.00022 41.2 27.4 145 182-355 844-997 (1158)
319 2xn4_A Kelch-like protein 2; s 94.2 2.5 8.5E-05 36.4 18.0 150 126-301 108-278 (302)
320 1zgk_A Kelch-like ECH-associat 93.8 3 0.0001 36.1 15.9 150 126-301 121-289 (308)
321 2ism_A Putative oxidoreductase 93.7 3.5 0.00012 36.6 21.8 110 114-236 31-152 (352)
322 3s25_A Hypothetical 7-bladed b 93.6 3.3 0.00011 35.9 18.1 172 124-355 61-253 (302)
323 1tl2_A L10, protein (tachylect 93.5 0.41 1.4E-05 39.1 8.7 112 219-351 41-157 (236)
324 3das_A Putative oxidoreductase 93.5 3.8 0.00013 36.2 25.9 247 32-344 31-324 (347)
325 1cru_A Protein (soluble quinop 93.3 3 0.0001 38.6 15.5 117 218-344 26-160 (454)
326 1cru_A Protein (soluble quinop 93.1 5.4 0.00018 36.9 21.0 116 114-236 27-161 (454)
327 1zgk_A Kelch-like ECH-associat 92.9 4.2 0.00014 35.1 20.8 150 126-301 70-242 (308)
328 2uvk_A YJHT; unknown function, 92.6 3.9 0.00013 36.2 14.9 19 137-155 168-186 (357)
329 1xi4_A Clathrin heavy chain; a 92.5 6.3 0.00022 41.8 17.5 170 114-302 106-292 (1630)
330 3sbq_A Nitrous-oxide reductase 92.2 2.9 9.8E-05 39.4 13.3 79 219-300 323-409 (638)
331 3ii7_A Kelch-like protein 7; p 91.8 5.8 0.0002 34.1 22.0 150 126-301 55-227 (306)
332 2zwa_A Leucine carboxyl methyl 91.3 12 0.0004 36.8 19.5 156 126-301 451-637 (695)
333 2xn4_A Kelch-like protein 2; s 91.2 6.6 0.00023 33.6 20.2 150 126-301 61-231 (302)
334 2wg3_C Hedgehog-interacting pr 90.2 7 0.00024 36.2 14.2 60 219-278 14-79 (463)
335 4asc_A Kelch repeat and BTB do 88.4 11 0.00039 32.4 17.2 29 126-154 98-134 (315)
336 2be1_A Serine/threonine-protei 86.2 8.7 0.0003 33.8 11.4 113 128-256 11-137 (339)
337 4asc_A Kelch repeat and BTB do 85.4 17 0.00058 31.3 21.3 152 124-301 43-223 (315)
338 2woz_A Kelch repeat and BTB do 85.0 18 0.00062 31.1 18.1 29 126-154 109-144 (318)
339 1xi4_A Clathrin heavy chain; a 84.1 20 0.00068 38.2 14.2 191 124-355 74-287 (1630)
340 1bpo_A Protein (clathrin); cla 82.6 29 0.00099 31.7 27.8 192 124-355 74-287 (494)
341 2be1_A Serine/threonine-protei 82.4 25 0.00085 30.9 13.0 22 45-66 11-32 (339)
342 4gq2_M Nucleoporin NUP120; bet 78.1 33 0.0011 35.1 13.8 39 220-259 237-276 (950)
343 2xzh_A Clathrin heavy chain 1; 75.1 42 0.0014 29.4 30.0 192 124-355 75-288 (365)
344 3ott_A Two-component system se 72.0 80 0.0027 31.1 27.8 211 114-355 232-446 (758)
345 2uvk_A YJHT; unknown function, 71.5 51 0.0018 28.7 16.7 30 126-155 65-104 (357)
346 3ott_A Two-component system se 70.6 86 0.0029 30.9 28.0 234 32-348 62-299 (758)
347 3s25_A Hypothetical 7-bladed b 64.6 67 0.0023 27.5 22.2 137 120-299 110-255 (302)
348 4hvt_A Ritya.17583.B, post-pro 58.1 1.5E+02 0.005 29.2 20.0 73 266-355 348-428 (711)
349 3q6k_A 43.2 kDa salivary prote 58.0 1E+02 0.0035 27.5 13.5 109 240-355 124-251 (381)
350 4gq2_M Nucleoporin NUP120; bet 57.0 48 0.0016 33.9 9.7 40 114-155 236-275 (950)
351 3zwu_A Alkaline phosphatase PH 54.4 31 0.0011 33.0 7.3 60 269-345 477-548 (592)
352 2woz_A Kelch repeat and BTB do 53.0 1.1E+02 0.0036 26.1 18.4 152 124-301 54-233 (318)
353 4a9v_A PHOX; hydrolase, beta-p 49.9 62 0.0021 30.7 8.4 61 268-345 476-548 (592)
354 3f7f_A Nucleoporin NUP120; nuc 48.4 88 0.003 30.6 9.4 37 115-155 223-259 (729)
355 4fhn_B Nucleoporin NUP120; pro 47.8 86 0.0029 32.8 10.1 40 220-260 239-279 (1139)
356 2wg3_C Hedgehog-interacting pr 44.2 1.9E+02 0.0066 26.5 14.0 29 34-62 15-44 (463)
357 2zwa_A Leucine carboxyl methyl 41.8 2.6E+02 0.0088 27.3 15.8 161 125-301 396-579 (695)
358 4fhn_B Nucleoporin NUP120; pro 40.0 15 0.00053 38.4 3.1 35 33-67 238-272 (1139)
359 3f7f_A Nucleoporin NUP120; nuc 38.3 35 0.0012 33.3 4.9 36 30-67 219-254 (729)
360 4a9v_A PHOX; hydrolase, beta-p 35.5 2.2E+02 0.0077 27.0 9.7 59 219-286 476-548 (592)
361 3zwu_A Alkaline phosphatase PH 32.6 1.9E+02 0.0063 27.7 8.8 59 220-286 477-548 (592)
362 3sbq_A Nitrous-oxide reductase 27.5 2E+02 0.0069 27.3 7.8 76 269-355 324-406 (638)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.4e-42 Score=321.70 Aligned_cols=281 Identities=16% Similarity=0.240 Sum_probs=242.2
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
...|.+.|++++|+|++++|++|+.||+|+|||+.+++.. ..+.+|.
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~---------------------------~~l~~h~------ 150 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE---------------------------RTLKGHT------ 150 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC---------------------------EEECCCS------
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE---------------------------EEEeccC------
Confidence 3478999999999999999999999999999999887643 6889999
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
..|.+++| +|++++|++|+.|++|++||+.+++. +..+..|. ..|.+++|+|++.++++
T Consensus 151 ------~~V~~v~~--~~~~~~l~sgs~D~~i~iwd~~~~~~--~~~~~~h~-----------~~V~~v~~~p~~~~l~s 209 (410)
T 1vyh_C 151 ------DSVQDISF--DHSGKLLASCSADMTIKLWDFQGFEC--IRTMHGHD-----------HNVSSVSIMPNGDHIVS 209 (410)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSCE--EECCCCCS-----------SCEEEEEECSSSSEEEE
T ss_pred ------CcEEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCce--eEEEcCCC-----------CCEEEEEEeCCCCEEEE
Confidence 99999999 89999999999999999999988763 33445555 78999999999999999
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
++. |+.|++||++ .+.++..+ .+|...|.+++++|++.++++| .|++|++||++ .+.+...+ .+|
T Consensus 210 ~s~--D~~i~~wd~~---~~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~-~~~~~~~~-------~~h 275 (410)
T 1vyh_C 210 ASR--DKTIKMWEVQ---TGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA-TKECKAEL-------REH 275 (410)
T ss_dssp EET--TSEEEEEETT---TCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEE-------CCC
T ss_pred EeC--CCeEEEEECC---CCcEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECC-CCceeeEe-------cCC
Confidence 998 9999999998 77888888 7999999999999999999999 99999999999 56666655 789
Q ss_pred CcceEEEEEcCC--------------------CCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeee
Q 014005 267 TEVITSAEFHPI--------------------YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 326 (432)
Q Consensus 267 ~~~v~~~~~~p~--------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 326 (432)
...|.+++|+|+ + .+|++|+.|+.|++||+++++. +..+.+|
T Consensus 276 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~sgs~D~~i~iwd~~~~~~----~~~~~~h------------- 337 (410)
T 1vyh_C 276 RHVVECISWAPESSYSSISEATGSETKKSGKPG-PFLLSGSRDKTIKMWDVSTGMC----LMTLVGH------------- 337 (410)
T ss_dssp SSCEEEEEECCSCGGGGGGGCCSCC-------C-CEEEEEETTSEEEEEETTTTEE----EEEEECC-------------
T ss_pred CceEEEEEEcCcccccchhhhccccccccCCCC-CEEEEEeCCCeEEEEECCCCce----EEEEECC-------------
Confidence 999999999996 4 6899999999999999998876 6788887
Q ss_pred ecceeEEEEcCCCCEEEEeeC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeee
Q 014005 327 IASISDIKFANDGQHLLSRDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSA 402 (432)
Q Consensus 327 ~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 402 (432)
...|.+++|+|+|++|++|++ ++|++||+ +++..+..|.. .+..+.......++++|+.|+.|++
T Consensus 338 ~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~-----------~v~~l~~~~~~~~l~sgs~D~~i~v 406 (410)
T 1vyh_C 338 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-----------FVTSLDFHKTAPYVVTGSVDQTVKV 406 (410)
T ss_dssp SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS-----------CEEEEEECSSSSCEEEEETTSEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC-----------cEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 789999999999999999754 99999999 67777877764 2222222222235899999999999
Q ss_pred ecc
Q 014005 403 LSA 405 (432)
Q Consensus 403 ~~~ 405 (432)
|+.
T Consensus 407 W~~ 409 (410)
T 1vyh_C 407 WEC 409 (410)
T ss_dssp EC-
T ss_pred EeC
Confidence 983
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=307.73 Aligned_cols=282 Identities=16% Similarity=0.167 Sum_probs=234.6
Q ss_pred ccCCCcEEEEEEcCC----CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005 29 LQDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~----g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~ 104 (432)
..|.+.|++++|+|+ +++|++|+.|++|+||++..++. .....+.+|.
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-------------------------~~~~~l~gh~--- 80 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-------------------------DLQWSLEGHQ--- 80 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-------------------------EEEEEECCCS---
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-------------------------eeeeeeccCC---
Confidence 479999999999985 67899999999999999987542 2345788999
Q ss_pred cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
..|.+++| ++++.++++++.|++|++||+.+++.... +..+. ..+..++|+|++.+
T Consensus 81 ---------~~v~~~~~--~~~~~~l~s~s~D~~i~lWd~~~~~~~~~--~~~~~-----------~~~~~~~~spdg~~ 136 (321)
T 3ow8_A 81 ---------LGVVSVDI--SHTLPIAASSSLDAHIRLWDLENGKQIKS--IDAGP-----------VDAWTLAFSPDSQY 136 (321)
T ss_dssp ---------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEE--EECCT-----------TCCCCEEECTTSSE
T ss_pred ---------CCEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCCEEEE--EeCCC-----------ccEEEEEECCCCCE
Confidence 99999999 89999999999999999999998874332 33333 56888999999999
Q ss_pred eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (432)
+++++. ++.+++|+++ ..+....+ ..+...+.+++|+|++++|++| .|+.|++||++ +++.+..+
T Consensus 137 l~~g~~--dg~v~i~~~~---~~~~~~~~-~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~-~~~~~~~~------- 202 (321)
T 3ow8_A 137 LATGTH--VGKVNIFGVE---SGKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA-TGKLLHTL------- 202 (321)
T ss_dssp EEEECT--TSEEEEEETT---TCSEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEE-------
T ss_pred EEEEcC--CCcEEEEEcC---CCceeEEe-cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECC-CCcEEEEE-------
Confidence 999988 9999999998 56666666 6788899999999999999999 99999999999 67777766
Q ss_pred CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (432)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 343 (432)
.+|...|++++|+|++ ++|++|+.||.|++||+++++. ...+.+| ...|.+++|+|+|++|+
T Consensus 203 ~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h-------------~~~v~~~~~sp~~~~l~ 264 (321)
T 3ow8_A 203 EGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANL----AGTLSGH-------------ASWVLNVAFCPDDTHFV 264 (321)
T ss_dssp CCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCCE----EEEECCC-------------SSCEEEEEECTTSSEEE
T ss_pred cccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcce----eEEEcCC-------------CCceEEEEECCCCCEEE
Confidence 7899999999999999 9999999999999999998775 5788887 78999999999999999
Q ss_pred Eee-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 344 SRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 344 s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
+++ |++|++||+ +++.++..|.. .+..+........+++|+.|+.|++|+.
T Consensus 265 s~s~D~~v~iwd~~~~~~~~~~~~h~~-----------~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 265 SSSSDKSVKVWDVGTRTCVHTFFDHQD-----------QVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSS-----------CEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEeCCCcEEEEeCCCCEEEEEEcCCCC-----------cEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 975 499999999 56666666653 2222222222235889999999999983
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.3e-40 Score=302.32 Aligned_cols=283 Identities=16% Similarity=0.205 Sum_probs=232.1
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
...|.+.|++++|+|+|++|++|+.||+|+|||..+++. ...+..|.
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~---------------------------~~~~~~~~------ 97 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---------------------------VHAIPLRS------ 97 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE---------------------------EEEEECSS------
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc---------------------------ceEeecCC------
Confidence 346899999999999999999999999999999887653 36778888
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 185 (432)
..|.+++| +|+++++++|+.|+.|++|++.++. ......+..|. +.+.++.|++++. +
T Consensus 98 ------~~v~~~~~--s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~-l 157 (340)
T 1got_B 98 ------SWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-----------GYLSCCRFLDDNQ-I 157 (340)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCS-----------SCEEEEEEEETTE-E
T ss_pred ------ccEEEEEE--CCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCC-----------ccEEEEEECCCCc-E
Confidence 89999999 8999999999999999999997653 22333344444 7788899988776 6
Q ss_pred ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (432)
Q Consensus 186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (432)
++++. |+.+++||++ +++++..+ .+|.+.|.+++|+|+++++++| .|+.|++||++ .+.+...+ .
T Consensus 158 ~s~s~--d~~i~~wd~~---~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~-~~~~~~~~-------~ 223 (340)
T 1got_B 158 VTSSG--DTTCALWDIE---TGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR-EGMCRQTF-------T 223 (340)
T ss_dssp EEEET--TSCEEEEETT---TTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCSEEEEE-------C
T ss_pred EEEEC--CCcEEEEECC---CCcEEEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC-CCeeEEEE-------c
Confidence 66666 9999999998 77888888 8999999999999999999999 99999999999 66677665 8
Q ss_pred CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
+|...|++++|+|++ ++|++|+.||.|++||+++++. +..+..+ . +...|.+++|+|+|++|++
T Consensus 224 ~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~----~~~~~~~-~----------~~~~v~~~~~s~~g~~l~~ 287 (340)
T 1got_B 224 GHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQE----LMTYSHD-N----------IICGITSVSFSKSGRLLLA 287 (340)
T ss_dssp CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE----EEEECCT-T----------CCSCEEEEEECTTSSEEEE
T ss_pred CCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcE----EEEEccC-C----------cccceEEEEECCCCCEEEE
Confidence 899999999999999 9999999999999999998764 3444321 0 1357999999999999999
Q ss_pred eeC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 345 RDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 345 ~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
|++ +.|++||+ +.+..+..|.. .+..+.......++++|+.|+.|++|+
T Consensus 288 g~~d~~i~vwd~~~~~~~~~~~~h~~-----------~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 288 GYDDFNCNVWDALKADRAGVLAGHDN-----------RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSS-----------CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCCeEEEEEcccCcEeeEeecCCC-----------cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 855 99999999 56666766654 222222222233589999999999996
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=8.2e-40 Score=293.93 Aligned_cols=252 Identities=16% Similarity=0.208 Sum_probs=214.8
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
.|.+.|++++|+|+|++|++|+.||+|+|||+++++ .+..+.+|.
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~---------------------------~~~~~~~~~-------- 55 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV---------------------------EVRSIQVTE-------- 55 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS--------
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc---------------------------eeEEeeccC--------
Confidence 688999999999999999999999999999998865 336788898
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
..|.+++| +|++++|++|+.|+.|++||+.+++. +..+..|. +.|.+++|+|++.++++++
T Consensus 56 ----~~v~~~~~--~~~~~~l~s~s~d~~i~vwd~~~~~~--~~~~~~h~-----------~~v~~~~~~~~~~~l~sgs 116 (304)
T 2ynn_A 56 ----TPVRAGKF--IARKNWIIVGSDDFRIRVFNYNTGEK--VVDFEAHP-----------DYIRSIAVHPTKPYVLSGS 116 (304)
T ss_dssp ----SCEEEEEE--EGGGTEEEEEETTSEEEEEETTTCCE--EEEEECCS-----------SCEEEEEECSSSSEEEEEE
T ss_pred ----CcEEEEEE--eCCCCEEEEECCCCEEEEEECCCCcE--EEEEeCCC-----------CcEEEEEEcCCCCEEEEEC
Confidence 89999999 78999999999999999999998873 33344455 7899999999999999999
Q ss_pred eeccceEEEEeecccccc-eeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 190 WTENMATKIANVGNSVHA-RCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
. |+.|++||++ .. .+.+.+ .+|...|.+++|+| ++..+++| .|++|++||++......... .+|
T Consensus 117 ~--D~~v~lWd~~---~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~-------~~~ 183 (304)
T 2ynn_A 117 D--DLTVKLWNWE---NNWALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-------TGQ 183 (304)
T ss_dssp T--TSCEEEEEGG---GTTEEEEEE-CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE-------CCC
T ss_pred C--CCeEEEEECC---CCcchhhhh-cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec-------cCC
Confidence 8 9999999998 33 445566 79999999999999 67889999 99999999998433333222 466
Q ss_pred CcceEEEEEcC--CCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 267 TEVITSAEFHP--IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 267 ~~~v~~~~~~p--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
...+..+.|+| ++ .+|++|+.|+.|++||+++++. +..+.+| ...|..++|+|++++|++
T Consensus 184 ~~~v~~~~~~~~~~~-~~l~s~s~D~~i~iWd~~~~~~----~~~~~~h-------------~~~v~~~~~~p~~~~l~s 245 (304)
T 2ynn_A 184 ERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSC----VATLEGH-------------MSNVSFAVFHPTLPIIIS 245 (304)
T ss_dssp TTCEEEEEECCSTTC-CEEEEEETTSEEEEEETTTTEE----EEEEECC-------------SSCEEEEEECSSSSEEEE
T ss_pred cCcEEEEEEEEcCCC-CEEEEEcCCCeEEEEeCCCCcc----ceeeCCC-------------CCCEEEEEECCCCCEEEE
Confidence 67899999987 55 7999999999999999998876 6888887 789999999999999999
Q ss_pred ee-CCeEEEEec---CcceeEeecce
Q 014005 345 RD-YMNLKVFRY---EPVMTLSFCGI 366 (432)
Q Consensus 345 ~~-~~~i~iwd~---~~~~~~~~~~~ 366 (432)
|+ |++|++||+ +.++.+..+..
T Consensus 246 ~s~Dg~i~iWd~~~~~~~~~~~~~~~ 271 (304)
T 2ynn_A 246 GSEDGTLKIWNSSTYKVEKTLNVGLE 271 (304)
T ss_dssp EETTSCEEEEETTTCCEEEEECCSSS
T ss_pred EcCCCeEEEEECCCCceeeeccCCCc
Confidence 85 499999999 56667766543
No 5
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.4e-39 Score=289.29 Aligned_cols=291 Identities=14% Similarity=0.132 Sum_probs=229.8
Q ss_pred ccCCCcEEEEEEcCCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
..|.+.|++++|+|++ ++|++|+.|++|++|++...... ....+..+.+|.
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------------~~~~~~~~~~h~------ 65 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------------FGVPVRSFKGHS------ 65 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE----------------------EEEEEEEEECCS------
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc----------------------ccccceEEeCCc------
Confidence 4799999999999965 89999999999999998754311 123456789999
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
..|.+++| +|++++|++|+.|++|++||+.+++.. ..+..|. ..|.+++|++++.++++
T Consensus 66 ------~~v~~~~~--s~dg~~l~s~s~D~~v~~wd~~~~~~~--~~~~~h~-----------~~v~~~~~~~~~~~l~s 124 (319)
T 3frx_A 66 ------HIVQDCTL--TADGAYALSASWDKTLRLWDVATGETY--QRFVGHK-----------SDVMSVDIDKKASMIIS 124 (319)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEE--EEEECCS-----------SCEEEEEECTTSCEEEE
T ss_pred ------ccEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCee--EEEccCC-----------CcEEEEEEcCCCCEEEE
Confidence 99999999 899999999999999999999988743 3344455 78999999999999999
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC------CEEEEE-cCCeEEEEeCCCCCceeeEeecCC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC------ETFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~ 260 (432)
++. |+.+++||++ ..++..+ .+|...|.++++.|.. ..++++ .|+.|++||++ ..+....+
T Consensus 125 ~s~--D~~i~vwd~~----~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~---- 192 (319)
T 3frx_A 125 GSR--DKTIKVWTIK----GQCLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN-QFQIEADF---- 192 (319)
T ss_dssp EET--TSCEEEEETT----SCEEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETT-TTEEEEEE----
T ss_pred EeC--CCeEEEEECC----CCeEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC-cchhheee----
Confidence 998 9999999986 3566677 7899999999999854 478888 99999999999 55555554
Q ss_pred CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC
Q 014005 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (432)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~ 340 (432)
.+|...|++++|+|++ ++|++|+.||.|++||+++++. +..+.. ...|.+++|+|+|.
T Consensus 193 ---~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~----~~~~~~--------------~~~v~~~~~sp~~~ 250 (319)
T 3frx_A 193 ---IGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKA----MYTLSA--------------QDEVFSLAFSPNRY 250 (319)
T ss_dssp ---CCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEE----EEEEEC--------------CSCEEEEEECSSSS
T ss_pred ---cCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcE----EEEecC--------------CCcEEEEEEcCCCC
Confidence 7899999999999999 9999999999999999998775 566665 36899999999999
Q ss_pred EEEEeeCCeEEEEecCc---ceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 341 HLLSRDYMNLKVFRYEP---VMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 341 ~l~s~~~~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
+|+++.++.+++|++.. +..+..+.. ... .........+.......++++|+.||.|++|+.
T Consensus 251 ~la~~~~~~i~v~~~~~~~~~~~~~~~~~--~~~-~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 251 WLAAATATGIKVFSLDPQYLVDDLRPEFA--GYS-KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp EEEEEETTEEEEEEETTEEEEEEECCCCT--TCC-GGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EEEEEcCCCcEEEEeCcCeeeeccCcccc--ccc-cCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence 99999888899999932 222222110 000 000111122222223336899999999999993
No 6
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=296.77 Aligned_cols=302 Identities=12% Similarity=0.130 Sum_probs=220.6
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..|...|.+++|+|+|++|++++ |+++|+||........ . ...|..........|.
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~-------~---------~~~~~~~~~~~~~~~~------- 82 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKD-------P---------CAAPNEGFCSAGVQTE------- 82 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESS-------G---------GGTTCGGGCSEEEEES-------
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecc-------c---------cccCCcceeeeeeccC-------
Confidence 45677899999999999999887 7788888743211000 0 0000011111222344
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeee--cCCCCccccccccccccccccccCCCCCccee
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKE--MDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
..|.+++| ++++ .|++|+.||+|++||+.+++...... ...|. +.|.+++|+|++.+++
T Consensus 83 -----~~v~~~~~--s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~-----------~~V~~v~~spdg~~l~ 143 (344)
T 4gqb_B 83 -----AGVADLTW--VGER-GILVASDSGAVELWELDENETLIVSKFCKYEHD-----------DIVSTVSVLSSGTQAV 143 (344)
T ss_dssp -----SCEEEEEE--ETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCS-----------SCEEEEEECTTSSEEE
T ss_pred -----CCEEEEEE--eCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCC-----------CCEEEEEECCCCCEEE
Confidence 78999999 7775 78899999999999999876433222 23444 7899999999999999
Q ss_pred cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (432)
+++. |+.|++||++ ++++++.+ .+|...|.+++|+|++. +++++ .|++|++||++ .++....+ ...
T Consensus 144 sgs~--d~~i~iwd~~---~~~~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~-----~~~ 211 (344)
T 4gqb_B 144 SGSK--DICIKVWDLA---QQVVLSSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR-CPKPASQI-----GCS 211 (344)
T ss_dssp EEET--TSCEEEEETT---TTEEEEEE-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETT-SSSCEEEC-----C--
T ss_pred EEeC--CCeEEEEECC---CCcEEEEE-cCcCCceEEEEecCCCCCceeeecccccccccccc-ccceeeee-----ecc
Confidence 9998 9999999999 78899998 89999999999999885 67888 99999999999 56655544 224
Q ss_pred CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC-CEEE
Q 014005 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLL 343 (432)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~ 343 (432)
.+...+++++|+|++.++|++|+.||.|++||+++++. +..+.+| ...|.+++|+|+| ++|+
T Consensus 212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~----~~~~~~h-------------~~~v~~v~fsp~g~~~la 274 (344)
T 4gqb_B 212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC----VLSSAVH-------------SQCVTGLVFSPHSVPFLA 274 (344)
T ss_dssp --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C----CEEEECC-------------SSCEEEEEECSSSSCCEE
T ss_pred eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE----EEEEcCC-------------CCCEEEEEEccCCCeEEE
Confidence 55667999999997658999999999999999998876 6888887 7899999999998 5788
Q ss_pred Eee-CCeEEEEec--CcceeEeecceeeeehhhhhcccccccccc-eeeEEEEeecccceeeeeccCCeeeecC
Q 014005 344 SRD-YMNLKVFRY--EPVMTLSFCGIYVWILRQLQHSRFMSIYAL-SCVIYIITTLYLINLSALSAGMDSILQP 413 (432)
Q Consensus 344 s~~-~~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~i~~~~~~~~~~~~~ 413 (432)
+|+ |++|+|||+ ..+..+..|.. .+..+.++ +....+++|++|+.|.+|+...+.+..+
T Consensus 275 sgs~D~~i~vwd~~~~~~~~~~~H~~-----------~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~~p 337 (344)
T 4gqb_B 275 SLSEDCSLAVLDSSLSELFRSQAHRD-----------FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAP 337 (344)
T ss_dssp EEETTSCEEEECTTCCEEEEECCCSS-----------CEEEEEECSSSTTEEEEEETTSCEEEEECCC------
T ss_pred EEeCCCeEEEEECCCCcEEEEcCCCC-----------CEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCCCC
Confidence 875 599999999 33344445543 22222222 2223578999999999999654444333
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.7e-39 Score=298.27 Aligned_cols=302 Identities=15% Similarity=0.181 Sum_probs=217.9
Q ss_pred ccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecc------cceEEEEEecCCcCCCCccccchhhhccc
Q 014005 8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDR------GGRVILFETVGGKNTPNQHISRSELEKQM 81 (432)
Q Consensus 8 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 81 (432)
......|.+... ....|.+.|++++|+|||++||+|+. |+.|++|+..++...
T Consensus 25 ~~~~~~w~~p~~-------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~-------------- 83 (357)
T 4g56_B 25 SSKGSAWGRPVT-------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN-------------- 83 (357)
T ss_dssp ----------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C--------------
T ss_pred CccccccCCCCC-------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc--------------
Confidence 344566765422 22468999999999999999999997 778999987665421
Q ss_pred cccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeee--cCCCC
Q 014005 82 DFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKE--MDHFP 159 (432)
Q Consensus 82 ~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~ 159 (432)
........+|. ..|.+++| +|++ .+++++.||+|++||+.+++...... ...|.
T Consensus 84 ---------~~~~~~~~~~~------------~~V~~~~~--s~d~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~ 139 (357)
T 4g56_B 84 ---------ESLCTAGVQTE------------AGVTDVAW--VSEK-GILVASDSGAVELWEILEKESLLVNKFAKYEHD 139 (357)
T ss_dssp ---------GGGCSEEEECS------------SCEEEEEE--ETTT-EEEEEETTSCEEEC--------CCCCEEECCCS
T ss_pred ---------eeEecccCCCC------------CCEEEEEE--cCCC-CEEEEECCCEEEEeeccccceeEEEeeccCCCC
Confidence 12223455677 88999999 7887 46678889999999998876332221 22334
Q ss_pred ccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-c
Q 014005 160 FVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-D 237 (432)
Q Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~ 237 (432)
+.|.+++|+|++.++++++. ++.|++||++ +++++..+ .+|...|++++|+|++. .++++ .
T Consensus 140 -----------~~V~~v~~spdg~~l~sgs~--dg~v~iwd~~---~~~~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~ 202 (357)
T 4g56_B 140 -----------DIVKTLSVFSDGTQAVSGGK--DFSVKVWDLS---QKAVLKSY-NAHSSEVNCVAACPGKDTIFLSCGE 202 (357)
T ss_dssp -----------SCEEEEEECSSSSEEEEEET--TSCEEEEETT---TTEEEEEE-CCCSSCEEEEEECTTCSSCEEEEET
T ss_pred -----------CCEEEEEECCCCCEEEEEeC--CCeEEEEECC---CCcEEEEE-cCCCCCEEEEEEccCCCceeeeecc
Confidence 78999999999999999998 9999999998 77888888 89999999999999875 67777 9
Q ss_pred CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccccc
Q 014005 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH 317 (432)
Q Consensus 238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~ 317 (432)
|+.|++||++ .++....+ ....+...+++++|+|++..+|++|+.|+.|++||+++++. ++.+.+|
T Consensus 203 dg~v~~wd~~-~~~~~~~~-----~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~----~~~~~~~---- 268 (357)
T 4g56_B 203 DGRILLWDTR-KPKPATRI-----DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS----AQTSAVH---- 268 (357)
T ss_dssp TSCEEECCTT-SSSCBCBC-----CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG----CEEECCC----
T ss_pred CCceEEEECC-CCceeeee-----eeccccccccchhhhhcccceEEEeecccceeEEECCCCcE----eEEEecc----
Confidence 9999999999 45544332 23567778999999998758999999999999999998876 6888886
Q ss_pred CCccceeeeecceeEEEEcCCC-CEEEEee-CCeEEEEec--CcceeEeecceeeeehhhhhcccccccccc-eeeEEEE
Q 014005 318 GSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKVFRY--EPVMTLSFCGIYVWILRQLQHSRFMSIYAL-SCVIYII 392 (432)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~s~dg-~~l~s~~-~~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 392 (432)
...|.+++|+|++ ++||+|+ |++|+|||+ ..+.....|.. .+..+.++ .....++
T Consensus 269 ---------~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~-----------~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 269 ---------SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRD-----------FVTGVAWSPLDHSKFT 328 (357)
T ss_dssp ---------SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSS-----------CEEEEEECSSSTTEEE
T ss_pred ---------ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCC-----------CEEEEEEeCCCCCEEE
Confidence 7899999999987 6788875 499999999 22222223332 23332222 1233588
Q ss_pred eecccceeeeecc
Q 014005 393 TTLYLINLSALSA 405 (432)
Q Consensus 393 ~g~~~~~i~~~~~ 405 (432)
+|+.||.|.+|+.
T Consensus 329 s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 329 TVGWDHKVLHHHL 341 (357)
T ss_dssp EEETTSCEEEEEC
T ss_pred EEcCCCeEEEEEC
Confidence 9999999999993
No 8
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.9e-39 Score=292.41 Aligned_cols=298 Identities=16% Similarity=0.166 Sum_probs=228.7
Q ss_pred cCCC-cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 30 QDVD-IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 30 ~h~~-~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
.|.+ .|++++|+|+|++||+|+.|++|+|||++++... .......+|.
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~------------------------~~~~~~~~h~------- 61 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI------------------------CKSVLSEGHQ------- 61 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE------------------------EEEEECSSCS-------
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce------------------------eeeeeccccC-------
Confidence 5776 8999999999999999999999999999876421 0112236788
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..|.+++| +|++++|++|+.|+.|++||+..+.......+..|. ..|.+++|+|++.+++++
T Consensus 62 -----~~v~~~~~--sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~-----------~~v~~v~~sp~~~~l~s~ 123 (345)
T 3fm0_A 62 -----RTVRKVAW--SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHE-----------NEVKSVAWAPSGNLLATC 123 (345)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCS-----------SCEEEEEECTTSSEEEEE
T ss_pred -----CcEEEEEE--CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCC-----------CCceEEEEeCCCCEEEEE
Confidence 99999999 899999999999999999999887665566666666 889999999999999999
Q ss_pred eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCc--eeeEeecCCCCcCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDD 265 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~--~~~~~~~~~~~~~~ 265 (432)
+. |+.+++||++......++..+ .+|...|.+++|+|++++|++| .|+.|++||.+ .+. +...+ .+
T Consensus 124 s~--D~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~-~~~~~~~~~~-------~~ 192 (345)
T 3fm0_A 124 SR--DKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVWHPSQELLASASYDDTVKLYREE-EDDWVCCATL-------EG 192 (345)
T ss_dssp ET--TSCEEEEEECTTSCEEEEEEE-CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEE-TTEEEEEEEE-------CC
T ss_pred EC--CCeEEEEECCCCCCeEEEEEe-cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEec-CCCEEEEEEe-------cC
Confidence 98 999999999865455667777 7899999999999999999999 99999999998 443 23333 88
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccc-----------cceeecccccccCCccceeeeecceeEEE
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-----------SARILRDAAESHGSKSFFTEIIASISDIK 334 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------~~~~~~~h~~~~~~~~~~~~~~~~v~~~~ 334 (432)
|...|++++|+|++ ++|++|+.|++|++||......... .+..+.+ .|...|.+++
T Consensus 193 h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~h~~~v~~v~ 259 (345)
T 3fm0_A 193 HESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG------------FHSRTIYDIA 259 (345)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS------------SCSSCEEEEE
T ss_pred CCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecC------------CCCCcEEEEE
Confidence 99999999999999 9999999999999999754321100 0112222 1367899999
Q ss_pred EcCCCCEEEEe-eCCeEEEEecCc-------ceeEeecceeeeehhhhhcccccccccce-eeEEEEeecccceeeeecc
Q 014005 335 FANDGQHLLSR-DYMNLKVFRYEP-------VMTLSFCGIYVWILRQLQHSRFMSIYALS-CVIYIITTLYLINLSALSA 405 (432)
Q Consensus 335 ~s~dg~~l~s~-~~~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~i~~~~~ 405 (432)
|+|++.+|+++ .|+.|++|+... ...+..+.. .-+...+..+..+. ....+++|+.||.|++|+.
T Consensus 260 ~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~------~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 260 WCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH------QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKY 333 (345)
T ss_dssp ECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEET------TSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEE
T ss_pred EecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeec------ccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEe
Confidence 99999999997 559999999811 111111100 00112222222222 2236899999999999995
Q ss_pred C
Q 014005 406 G 406 (432)
Q Consensus 406 ~ 406 (432)
.
T Consensus 334 ~ 334 (345)
T 3fm0_A 334 Q 334 (345)
T ss_dssp C
T ss_pred c
Confidence 4
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.3e-39 Score=293.87 Aligned_cols=284 Identities=16% Similarity=0.189 Sum_probs=230.9
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
...|.+.|+|++|+|++++||+|+.||+|+|||..+++. ...+..|.
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~---------------------------~~~~~~~~------ 106 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK---------------------------EHAVTMPC------ 106 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------------------EEEEECSS------
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc---------------------------ceEEecCC------
Confidence 347999999999999999999999999999999877652 25667777
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcce----eeeeecCCCCccccccccccccccccccCCCCCc
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV----KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 183 (432)
..|.+++| +|++.++++++.|+.+++|++..... .....+..|. +.+.++.|++++.
T Consensus 107 ------~~v~~~~~--sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~ 167 (354)
T 2pbi_B 107 ------TWVMACAY--APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT-----------NYLSACSFTNSDM 167 (354)
T ss_dssp ------SCCCEEEE--CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECS-----------SCEEEEEECSSSS
T ss_pred ------CCEEEEEE--CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccC-----------CcEEEEEEeCCCC
Confidence 88999999 89999999999999999999864321 1111222333 7889999999999
Q ss_pred ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCC
Q 014005 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (432)
Q Consensus 184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~ 260 (432)
.+++++. |+.|++||++ +++++..+ .+|...|.+++++| +++.+++| .|+.|++||++ +++++..+
T Consensus 168 ~l~t~s~--D~~v~lwd~~---~~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~-~~~~~~~~---- 236 (354)
T 2pbi_B 168 QILTASG--DGTCALWDVE---SGQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR-SGQCVQAF---- 236 (354)
T ss_dssp EEEEEET--TSEEEEEETT---TCCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT-TCCEEEEE----
T ss_pred EEEEEeC--CCcEEEEeCC---CCeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC-CCcEEEEe----
Confidence 9999988 9999999998 77888888 79999999999987 46899999 99999999999 67777766
Q ss_pred CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC
Q 014005 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (432)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~ 340 (432)
.+|...|++++|+|++ .+|++|+.|++|++||+++++. ...+..+. +...+.+++|+|+|+
T Consensus 237 ---~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~----~~~~~~~~-----------~~~~~~~~~~s~~g~ 297 (354)
T 2pbi_B 237 ---ETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADRE----VAIYSKES-----------IIFGASSVDFSLSGR 297 (354)
T ss_dssp ---CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE----EEEECCTT-----------CCSCEEEEEECTTSS
T ss_pred ---cCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcE----EEEEcCCC-----------cccceeEEEEeCCCC
Confidence 8899999999999999 9999999999999999997664 34444320 134788999999999
Q ss_pred EEEEeeC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 341 HLLSRDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 341 ~l~s~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
+|++|+. +.|++||+ ..+..+..|.. .+..+.......++++|+.|+.|++|+
T Consensus 298 ~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~-----------~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 298 LLFAGYNDYTINVWDVLKGSRVSILFGHEN-----------RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEECCCSS-----------CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEEECCCcEEEEECCCCceEEEEECCCC-----------cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999854 99999999 55666666653 222222222233689999999999995
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.6e-39 Score=299.06 Aligned_cols=292 Identities=17% Similarity=0.235 Sum_probs=229.3
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
...|.+.|++++|+|+|++|++|+.||+|+|||..+++ ....+.+|.
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~---------------------------~~~~~~~h~------ 108 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ---------------------------KTHAIKLHC------ 108 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE---------------------------EEEEEECCC------
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------------------------cceEEecCC------
Confidence 34799999999999999999999999999999998765 336788898
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-----eeeeeecCCCCccccccccccccccccccCCCCC
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-----VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (432)
..|.+++| +|+++++++|+.|+.+++||+.... ......+..|. +.+.++.|.|+.
T Consensus 109 ------~~v~~~~~--s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~-----------~~v~~~~~~~~~ 169 (380)
T 3iz6_a 109 ------PWVMECAF--APNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHK-----------GYASSCQYVPDQ 169 (380)
T ss_dssp ------TTCCCCEE--CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCS-----------SCCCCCBCCSSS
T ss_pred ------CCEEEEEE--CCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCC-----------cceEEEEEecCC
Confidence 89999999 8999999999999999999997532 11122233444 778899999874
Q ss_pred -cceecceeeccceEEEEeecccccceeeEEe----ecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCceeeE
Q 014005 183 -AHGYHLEWTENMATKIANVGNSVHARCQKVY----PHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNI 255 (432)
Q Consensus 183 -~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~----~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~ 255 (432)
..+++++. |+.+++||+. +++++..+ ..+|...|.++++++ +++++++| .|++|++||++.....+..
T Consensus 170 ~~~l~s~s~--D~~i~~wd~~---~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~ 244 (380)
T 3iz6_a 170 ETRLITGSG--DQTCVLWDVT---TGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT 244 (380)
T ss_dssp SSCEEEECT--TSCEEEECTT---TCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE
T ss_pred CCEEEEECC--CCcEEEEEcC---CCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence 56888887 9999999998 55666554 246889999999987 78899999 9999999999855566665
Q ss_pred eecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEE
Q 014005 256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (432)
Q Consensus 256 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~ 335 (432)
+ .+|...|++++|+|++ ++|++|+.||+|++||+++++. +..+..|+.... .+...|.+++|
T Consensus 245 ~-------~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~----~~~~~~~~~~~~------~~~~~v~~~~~ 306 (380)
T 3iz6_a 245 Y-------HGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQ----LQVYNREPDRND------NELPIVTSVAF 306 (380)
T ss_dssp E-------CCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEE----EEEECCCCSSSC------CSSCSCSEEEE
T ss_pred E-------CCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcE----EEEecccccccc------cccCceEEEEE
Confidence 5 8899999999999999 9999999999999999998875 455554311100 01245899999
Q ss_pred cCCCCEEEEeeC-CeEEEEec---CcceeE----eecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 336 ANDGQHLLSRDY-MNLKVFRY---EPVMTL----SFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 336 s~dg~~l~s~~~-~~i~iwd~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
+|+|++|++|+. |.|++||+ +.+..+ ..|. ..+..+.......++++|+.|+.|++|+.
T Consensus 307 s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~-----------~~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 307 SISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHE-----------GRISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCC-----------CCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred CCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCC-----------CceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 999999999854 99999999 333333 2222 22333333333346999999999999994
No 11
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.4e-38 Score=285.35 Aligned_cols=265 Identities=14% Similarity=0.154 Sum_probs=224.2
Q ss_pred chhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccc
Q 014005 4 NREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF 83 (432)
Q Consensus 4 ~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 83 (432)
.+..+.....|++...-. ........|...|.+++|+|++.++++|+.|++|++||+.+++.
T Consensus 53 tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~----------------- 114 (321)
T 3ow8_A 53 TGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ----------------- 114 (321)
T ss_dssp EEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------------
T ss_pred EEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCE-----------------
Confidence 334455667777652100 00112347899999999999999999999999999999988653
Q ss_pred cccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccc
Q 014005 84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS 163 (432)
Q Consensus 84 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 163 (432)
+..+..|. ..+.+++| +|++++|++++.|+.|++|++.+++.... +..+.
T Consensus 115 ----------~~~~~~~~------------~~~~~~~~--spdg~~l~~g~~dg~v~i~~~~~~~~~~~--~~~~~---- 164 (321)
T 3ow8_A 115 ----------IKSIDAGP------------VDAWTLAF--SPDSQYLATGTHVGKVNIFGVESGKKEYS--LDTRG---- 164 (321)
T ss_dssp ----------EEEEECCT------------TCCCCEEE--CTTSSEEEEECTTSEEEEEETTTCSEEEE--EECSS----
T ss_pred ----------EEEEeCCC------------ccEEEEEE--CCCCCEEEEEcCCCcEEEEEcCCCceeEE--ecCCC----
Confidence 36677787 88999999 89999999999999999999988764332 22233
Q ss_pred ccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEE
Q 014005 164 ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRIN 242 (432)
Q Consensus 164 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~ 242 (432)
..+.+++|+|++.++++++. |+.|++||++ +++++..+ .+|...|.+++|+|++++|++| .|+.|+
T Consensus 165 -------~~v~~~~~spdg~~lasg~~--dg~i~iwd~~---~~~~~~~~-~~h~~~v~~l~~spd~~~l~s~s~dg~i~ 231 (321)
T 3ow8_A 165 -------KFILSIAYSPDGKYLASGAI--DGIINIFDIA---TGKLLHTL-EGHAMPIRSLTFSPDSQLLVTASDDGYIK 231 (321)
T ss_dssp -------SCEEEEEECTTSSEEEEEET--TSCEEEEETT---TTEEEEEE-CCCSSCCCEEEECTTSCEEEEECTTSCEE
T ss_pred -------ceEEEEEECCCCCEEEEEcC--CCeEEEEECC---CCcEEEEE-cccCCceeEEEEcCCCCEEEEEcCCCeEE
Confidence 57889999999999999998 9999999998 77888888 8899999999999999999999 999999
Q ss_pred EEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccc
Q 014005 243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (432)
Q Consensus 243 lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~ 322 (432)
+||++ .......+ .+|...|.+++|+|++ .+|++++.|++|++||+++++. +..+.+|
T Consensus 232 iwd~~-~~~~~~~~-------~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~~~~----~~~~~~h--------- 289 (321)
T 3ow8_A 232 IYDVQ-HANLAGTL-------SGHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGTRTC----VHTFFDH--------- 289 (321)
T ss_dssp EEETT-TCCEEEEE-------CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE----EEEECCC---------
T ss_pred EEECC-CcceeEEE-------cCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCEE----EEEEcCC---------
Confidence 99999 56666655 8899999999999999 9999999999999999998876 6788887
Q ss_pred eeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 323 FTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 323 ~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
...|.+++|+|+|++|+++++ ++|++||+
T Consensus 290 ----~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 290 ----QDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ----SSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred ----CCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 789999999999999999754 99999996
No 12
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.1e-38 Score=290.93 Aligned_cols=307 Identities=12% Similarity=0.153 Sum_probs=223.3
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc----
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF---- 104 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~---- 104 (432)
+.|.+.|+|++|+|+|++||+|+ +++++||++.+++.. ..+..|....
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~---------------------------~~l~~~~~~~~~~~ 112 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV---------------------------ARLSDDSAANKDPE 112 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE---------------------------EEECC---------
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEE---------------------------EEecCccccccccc
Confidence 46999999999999999999987 689999999887633 2222221000
Q ss_pred --cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005 105 --DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (432)
Q Consensus 105 --~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (432)
...........|.+++| +|++++|++|+.|+.|++||+.+++.. ..+..|. ..|.+++|+|++
T Consensus 113 ~~~~~~~~~~~~~v~~v~~--s~dg~~l~s~~~d~~i~iwd~~~~~~~--~~~~~h~-----------~~v~~~~~~p~~ 177 (393)
T 1erj_A 113 NLNTSSSPSSDLYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIV--MILQGHE-----------QDIYSLDYFPSG 177 (393)
T ss_dssp --------CCCCBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEE--EEECCCS-----------SCEEEEEECTTS
T ss_pred cccccccCCCceeEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEE--EEEccCC-----------CCEEEEEEcCCC
Confidence 00000000145899999 899999999999999999999987643 3344455 789999999999
Q ss_pred cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCC
Q 014005 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (432)
Q Consensus 183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~ 260 (432)
.++++++. |+.+++||++ ++++...+ .+...+.+++++| +++++++| .|+.|++||++ .+..+..+....
T Consensus 178 ~~l~s~s~--d~~v~iwd~~---~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~-~~~~~~~~~~~~ 249 (393)
T 1erj_A 178 DKLVSGSG--DRTVRIWDLR---TGQCSLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-TGFLVERLDSEN 249 (393)
T ss_dssp SEEEEEET--TSEEEEEETT---TTEEEEEE--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT-TCCEEEEEC---
T ss_pred CEEEEecC--CCcEEEEECC---CCeeEEEE--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC-CCcEEEeecccc
Confidence 99999988 9999999998 66776666 3567899999999 89999999 99999999999 566665553333
Q ss_pred CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccc--------ccceeecccccccCCccceeeeecceeE
Q 014005 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD--------HSARILRDAAESHGSKSFFTEIIASISD 332 (432)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~--------~~~~~~~~h~~~~~~~~~~~~~~~~v~~ 332 (432)
....+|...|.+++|+|++ ++|++|+.||.|++||+++..... .....+.+| ...|.+
T Consensus 250 ~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h-------------~~~v~~ 315 (393)
T 1erj_A 250 ESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-------------KDFVLS 315 (393)
T ss_dssp ---CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC---------------CEEEEEECC-------------SSCEEE
T ss_pred cCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc-------------cCcEEE
Confidence 3346789999999999999 999999999999999998643210 012334444 789999
Q ss_pred EEEcCCCCEEEEeeC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 333 IKFANDGQHLLSRDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 333 ~~~s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
++|+|++++|++|+. +.|++||+ +++..+..|...+....+... .........+++|+.||.|++|+.
T Consensus 316 ~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~-----~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 316 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG-----SSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS-----CTTCTTCEEEEEEETTSEEEEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCC-----cCcCCCCCEEEEECCCCcEEECcc
Confidence 999999999999855 99999999 667777777642111111000 000012346899999999999984
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3e-38 Score=295.73 Aligned_cols=263 Identities=16% Similarity=0.258 Sum_probs=224.8
Q ss_pred chhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccc
Q 014005 4 NREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF 83 (432)
Q Consensus 4 ~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 83 (432)
++..+.....|++... ........|.+.|++++|+|+|++|++|+.|++|+|||+.+.+
T Consensus 125 s~s~Dg~i~vwd~~~~---~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~------------------ 183 (410)
T 1vyh_C 125 SASEDATIKVWDYETG---DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE------------------ 183 (410)
T ss_dssp EEESSSCEEEEETTTC---CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC------------------
T ss_pred EEeCCCeEEEEECCCC---cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc------------------
Confidence 3344556667776531 1223344689999999999999999999999999999997754
Q ss_pred cccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccc
Q 014005 84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS 163 (432)
Q Consensus 84 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 163 (432)
++..+.+|. ..|.+++| +|+++++++|+.|++|++||+.++.... .+..|.
T Consensus 184 ---------~~~~~~~h~------------~~V~~v~~--~p~~~~l~s~s~D~~i~~wd~~~~~~~~--~~~~h~---- 234 (410)
T 1vyh_C 184 ---------CIRTMHGHD------------HNVSSVSI--MPNGDHIVSASRDKTIKMWEVQTGYCVK--TFTGHR---- 234 (410)
T ss_dssp ---------EEECCCCCS------------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCCEEE--EEECCS----
T ss_pred ---------eeEEEcCCC------------CCEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCcEEE--EEeCCC----
Confidence 446788999 99999999 8999999999999999999999887432 334444
Q ss_pred ccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC--------------
Q 014005 164 ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-------------- 229 (432)
Q Consensus 164 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------- 229 (432)
..+..+.+++++.++++++. |+.|++||+. ...+...+ .+|...|.+++|+|+
T Consensus 235 -------~~v~~~~~~~~g~~l~s~s~--D~~v~vwd~~---~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~ 301 (410)
T 1vyh_C 235 -------EWVRMVRPNQDGTLIASCSN--DQTVRVWVVA---TKECKAEL-REHRHVVECISWAPESSYSSISEATGSET 301 (410)
T ss_dssp -------SCEEEEEECTTSSEEEEEET--TSCEEEEETT---TCCEEEEE-CCCSSCEEEEEECCSCGGGGGGGCCSCC-
T ss_pred -------ccEEEEEECCCCCEEEEEcC--CCeEEEEECC---CCceeeEe-cCCCceEEEEEEcCcccccchhhhccccc
Confidence 67899999999999999998 9999999998 67788888 889999999999996
Q ss_pred ------CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 230 ------CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 230 ------~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
+.++++| .|+.|++||++ .+.++..+ .+|...|++++|+|++ ++|++|+.||.|++||+++++.
T Consensus 302 ~~~~~~g~~l~sgs~D~~i~iwd~~-~~~~~~~~-------~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 302 KKSGKPGPFLLSGSRDKTIKMWDVS-TGMCLMTL-------VGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRC 372 (410)
T ss_dssp ------CCEEEEEETTSEEEEEETT-TTEEEEEE-------ECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCC
T ss_pred cccCCCCCEEEEEeCCCeEEEEECC-CCceEEEE-------ECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCce
Confidence 6789999 99999999999 67777766 7899999999999999 9999999999999999998775
Q ss_pred ccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005 303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 303 ~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~ 355 (432)
+..+.+| ...|++++|+|++.+|++|+ |++|++|++
T Consensus 373 ----~~~~~~h-------------~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 373 ----MKTLNAH-------------EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ----CEEEECC-------------SSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred ----EEEEcCC-------------CCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 6888887 78999999999999999975 499999985
No 14
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=6.1e-37 Score=280.11 Aligned_cols=297 Identities=14% Similarity=0.107 Sum_probs=222.1
Q ss_pred ccCCCcEEEEEE-----cC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCc
Q 014005 29 LQDVDIVSAIEF-----DK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP 102 (432)
Q Consensus 29 ~~h~~~V~~~~f-----sp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~ 102 (432)
..|.+.|++++| ++ ++++|++|+.|++|+|||+...+.... .......+.+|.
T Consensus 18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~--------------------~~~~~~~l~~h~- 76 (343)
T 2xzm_R 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY--------------------FGIPHKALTGHN- 76 (343)
T ss_dssp ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB--------------------SEEEEEEECCCS-
T ss_pred ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc--------------------cccccchhccCC-
Confidence 369999999999 77 899999999999999999976532100 112346788999
Q ss_pred cccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (432)
Q Consensus 103 ~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (432)
..|.+++| +|++.++++++.|++|++||+.+++.. ..+..|. ..|.+++|+|++
T Consensus 77 -----------~~V~~~~~--~~~~~~l~s~s~D~~v~lwd~~~~~~~--~~~~~h~-----------~~v~~v~~sp~~ 130 (343)
T 2xzm_R 77 -----------HFVSDLAL--SQENCFAISSSWDKTLRLWDLRTGTTY--KRFVGHQ-----------SEVYSVAFSPDN 130 (343)
T ss_dssp -----------SCEEEEEE--CSSTTEEEEEETTSEEEEEETTSSCEE--EEEECCC-----------SCEEEEEECSST
T ss_pred -----------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCcEE--EEEcCCC-----------CcEEEEEECCCC
Confidence 99999999 899999999999999999999988633 3334444 789999999999
Q ss_pred cceecceeeccceEEEEeecccccceeeEEe--ecCCCCCeeEEEeCCCC----------CEEEEE-cCCeEEEEeCCCC
Q 014005 183 AHGYHLEWTENMATKIANVGNSVHARCQKVY--PHAHDFNINSISNNSDC----------ETFVSA-DDLRINLWNLEIS 249 (432)
Q Consensus 183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~----------~~l~~~-~d~~i~lwd~~~~ 249 (432)
.++++++. |+.+++||+.. .+.... ...|...|.+++|+|++ .+++++ .|+.|++||.+
T Consensus 131 ~~l~s~~~--d~~i~~wd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-- 202 (343)
T 2xzm_R 131 RQILSAGA--EREIKLWNILG----ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-- 202 (343)
T ss_dssp TEEEEEET--TSCEEEEESSS----CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--
T ss_pred CEEEEEcC--CCEEEEEeccC----CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--
Confidence 99999988 99999999862 222222 13688899999999987 689998 99999999955
Q ss_pred CceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecc
Q 014005 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (432)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~ 329 (432)
......+ .+|...|++++|+|++ ++|++|+.||.|++||++..... ...+.. ...
T Consensus 203 ~~~~~~~-------~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~---~~~~~~--------------~~~ 257 (343)
T 2xzm_R 203 FQIRYTF-------KAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYP---QREFDA--------------GST 257 (343)
T ss_dssp TEEEEEE-------ECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSC---SEEEEC--------------SSC
T ss_pred CceeEEE-------cCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCccc---ceeecC--------------CCc
Confidence 4555544 7899999999999999 99999999999999999644322 334432 357
Q ss_pred eeEEEEcCCCCEEEEeeCCeEEEEec---Ccce--eEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 330 ISDIKFANDGQHLLSRDYMNLKVFRY---EPVM--TLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 330 v~~~~~s~dg~~l~s~~~~~i~iwd~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
|.+++|+|+++++++|.++.|++||+ .... .+..+.........-....+..+..+....++++|+.||.|++|+
T Consensus 258 v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 258 INQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp EEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred EEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence 99999999999999888889999999 2222 222111000000000011122222222233689999999999998
Q ss_pred c
Q 014005 405 A 405 (432)
Q Consensus 405 ~ 405 (432)
.
T Consensus 338 ~ 338 (343)
T 2xzm_R 338 F 338 (343)
T ss_dssp E
T ss_pred E
Confidence 4
No 15
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.9e-37 Score=277.61 Aligned_cols=284 Identities=18% Similarity=0.264 Sum_probs=226.5
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..|.+.|++++|+|+|++|++|+.||.|++|+..+++ ....+.+|.
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~---------------------------~~~~~~~h~------- 65 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---------------------------FEKTISGHK------- 65 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------------------------EEEEECCCS-------
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc---------------------------cchhhccCC-------
Confidence 4789999999999999999999999999999987765 336788898
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..|.+++| +|++++|++++.|+.|++||+.+++... .+..+. ..+.++.|+|++.+++++
T Consensus 66 -----~~v~~~~~--~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~-----------~~v~~~~~~~~~~~l~s~ 125 (312)
T 4ery_A 66 -----LGISDVAW--SSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHS-----------NYVFCCNFNPQSNLIVSG 125 (312)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEE--EEECCS-----------SCEEEEEECSSSSEEEEE
T ss_pred -----CceEEEEE--cCCCCEEEEECCCCEEEEEECCCCcEEE--EEcCCC-----------CCEEEEEEcCCCCEEEEE
Confidence 99999999 8999999999999999999999877433 333344 678999999999999999
Q ss_pred eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
+. |+.+++||++ ..+++..+ ..|...|.+++|+|++++++++ .|+.|++||++ .++.+..+ ...+.
T Consensus 126 ~~--d~~i~iwd~~---~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~~------~~~~~ 192 (312)
T 4ery_A 126 SF--DESVRIWDVK---TGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA-SGQCLKTL------IDDDN 192 (312)
T ss_dssp ET--TSCEEEEETT---TCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEE------CCSSC
T ss_pred eC--CCcEEEEECC---CCEEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeeEE------eccCC
Confidence 98 9999999998 67788888 7899999999999999999999 99999999999 55555543 24566
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~- 346 (432)
..+..++|+|++ ++|++++.||.|++||+++++. +..+.+|... ...+......+++++|++|+
T Consensus 193 ~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~----------~~~~~~~~~~~~~~~l~sg~~ 257 (312)
T 4ery_A 193 PPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGKC----LKTYTGHKNE----------KYCIFANFSVTGGKWIVSGSE 257 (312)
T ss_dssp CCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEE----EEEECSSCCS----------SSCCCEEEECSSSCEEEECCT
T ss_pred CceEEEEECCCC-CEEEEEcCCCeEEEEECCCCcE----EEEEEecCCc----------eEEEEEEEEeCCCcEEEEECC
Confidence 789999999999 9999999999999999998875 5777775110 11222333346789999975
Q ss_pred CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeec--ccceeeeecc
Q 014005 347 YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTL--YLINLSALSA 405 (432)
Q Consensus 347 ~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~i~~~~~ 405 (432)
|+.|++||+ +.+..+..|.. .+..+........+++++ .|+.|++|+.
T Consensus 258 dg~i~vwd~~~~~~~~~~~~h~~-----------~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 258 DNLVYIWNLQTKEIVQKLQGHTD-----------VVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCCSS-----------CEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred CCEEEEEECCCchhhhhhhccCC-----------cEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 499999999 56666766653 122211222222455554 6999999984
No 16
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.3e-37 Score=282.06 Aligned_cols=245 Identities=15% Similarity=0.122 Sum_probs=200.5
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
.++...|++++|+|++ .|++|+.||+|+|||+++++.. ......+.+|.
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~-----------------------~~~~~~~~~H~------- 127 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETL-----------------------IVSKFCKYEHD------- 127 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSC-----------------------EEEEEEEECCS-------
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCce-----------------------eEeeccccCCC-------
Confidence 4567789999999986 5789999999999999987643 11223456898
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc-ceec
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYH 187 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~ 187 (432)
..|++++| +|++++|++|+.|++|++||+.+++. +..+..|. +.|.+++|++++. .+++
T Consensus 128 -----~~V~~v~~--spdg~~l~sgs~d~~i~iwd~~~~~~--~~~~~~h~-----------~~V~~~~~~~~~~~~l~s 187 (344)
T 4gqb_B 128 -----DIVSTVSV--LSSGTQAVSGSKDICIKVWDLAQQVV--LSSYRAHA-----------AQVTCVAASPHKDSVFLS 187 (344)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEE--EEEECCCS-----------SCEEEEEECSSCTTEEEE
T ss_pred -----CCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCcE--EEEEcCcC-----------CceEEEEecCCCCCceee
Confidence 99999999 89999999999999999999998874 33445555 7899999999986 5677
Q ss_pred ceeeccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (432)
++. |+.|++||++ ..++...+. ..+...+.+++|+|+ ++++++| .|++|++||++ +++++..+ .
T Consensus 188 ~s~--D~~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~-~~~~~~~~-------~ 254 (344)
T 4gqb_B 188 CSE--DNRILLWDTR---CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK-STSCVLSS-------A 254 (344)
T ss_dssp EET--TSCEEEEETT---SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC-C--CCEEE-------E
T ss_pred ecc--cccccccccc---ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC-CCcEEEEE-------c
Confidence 877 9999999998 556655542 345667999999995 5678888 99999999999 67777765 8
Q ss_pred CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC-EEE
Q 014005 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLL 343 (432)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~ 343 (432)
+|...|++++|+|++.++|++|+.|++|+|||+++++. ..+.+| .+.|.+++|+|+|+ +|+
T Consensus 255 ~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-----~~~~~H-------------~~~V~~v~~sp~~~~lla 316 (344)
T 4gqb_B 255 VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-----FRSQAH-------------RDFVRDATWSPLNHSLLT 316 (344)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-----EEECCC-------------SSCEEEEEECSSSTTEEE
T ss_pred CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-----EEEcCC-------------CCCEEEEEEeCCCCeEEE
Confidence 99999999999999856899999999999999998764 556777 78999999999987 466
Q ss_pred Eee-CCeEEEEec
Q 014005 344 SRD-YMNLKVFRY 355 (432)
Q Consensus 344 s~~-~~~i~iwd~ 355 (432)
+|+ |++|++|++
T Consensus 317 s~s~D~~v~~w~v 329 (344)
T 4gqb_B 317 TVGWDHQVVHHVV 329 (344)
T ss_dssp EEETTSCEEEEEC
T ss_pred EEcCCCeEEEEEC
Confidence 764 699999999
No 17
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=5e-37 Score=291.01 Aligned_cols=311 Identities=24% Similarity=0.403 Sum_probs=224.6
Q ss_pred hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005 6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS 85 (432)
Q Consensus 6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (432)
......+.|+|.|+|++. ...+++.+.|++++|+|+|++||+|+.||.|+||++.+++....
T Consensus 4 ~~~~~~~~w~~~q~~~~~--~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~---------------- 65 (447)
T 3dw8_B 4 AGGGNDIQWCFSQVKGAV--DDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS---------------- 65 (447)
T ss_dssp ----CCCCCEEEECCSCS--SSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C----------------
T ss_pred CCCCcceeEEEEEecccc--cccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc----------------
Confidence 345578899999999963 55688999999999999999999999999999999987652100
Q ss_pred cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCC--CEEEEEeCCCeEEEEEccCcceeeee-ecCCCC---
Q 014005 86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIK-EMDHFP--- 159 (432)
Q Consensus 86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~--- 159 (432)
...+++++...+++|.++|+++..+.++..|.+++| +|++ .+|++++.|+.|++||+..+...... ....+.
T Consensus 66 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~--~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~ 143 (447)
T 3dw8_B 66 HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW--LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRY 143 (447)
T ss_dssp CCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE--CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC------
T ss_pred ccccceeEecccccccccccccccccccCceEEEEE--cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccc
Confidence 011245567889999999999999988899999999 7787 79999999999999999865432100 000000
Q ss_pred ----cccc-------------------ccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEe---
Q 014005 160 ----FVSS-------------------ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVY--- 213 (432)
Q Consensus 160 ----~~~~-------------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~--- 213 (432)
.+.. .........|.+++|+|++.+++++ . |+.|++||++.. ..+...+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~--d~~i~iwd~~~~--~~~~~~~~~~ 218 (447)
T 3dw8_B 144 RDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-D--DLRINLWHLEIT--DRSFNIVDIK 218 (447)
T ss_dssp --CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-C--SSEEEEEETTEE--EEEEEEEECC
T ss_pred cCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-C--CCeEEEEECCCC--Cceeeeeecc
Confidence 0000 0001123789999999999999997 5 999999999831 2333321
Q ss_pred ---ecCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCCCCCce----eeEeecCCCCcCCCCc------------ceEE
Q 014005 214 ---PHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQC----FNIVDMKPSNMDDLTE------------VITS 272 (432)
Q Consensus 214 ---~~~~~~~i~~~~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~----~~~~~~~~~~~~~~~~------------~v~~ 272 (432)
..+|...|.+++|+|++ +++++| .|+.|++||++ .+.. ...+ ..|.. .|.+
T Consensus 219 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~ 290 (447)
T 3dw8_B 219 PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR-ASALCDRHSKLF-------EEPEDPSNRSFFSEIISSISD 290 (447)
T ss_dssp CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT-TCSSSCTTCEEE-------CCC-----CCHHHHHTTCEEE
T ss_pred cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc-CCccccceeeEe-------ccCCCccccccccccCceEEE
Confidence 15789999999999998 899999 99999999999 4443 4444 55554 8999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEccc-cccccccceeecccccccCCc-cce-eeeecceeEEEEcCCCCEEEEeeC-C
Q 014005 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSK-SFF-TEIIASISDIKFANDGQHLLSRDY-M 348 (432)
Q Consensus 273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~-~~~-~~~~~~v~~~~~s~dg~~l~s~~~-~ 348 (432)
++|+|++ ++|++++. +.|++||+++ ++. +..+.+|....... ..+ ......+..++|+|+|++|++|+. +
T Consensus 291 ~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg 364 (447)
T 3dw8_B 291 VKFSHSG-RYMMTRDY-LSVKVWDLNMENRP----VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNN 364 (447)
T ss_dssp EEECTTS-SEEEEEES-SEEEEEETTCCSSC----SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTT
T ss_pred EEECCCC-CEEEEeeC-CeEEEEeCCCCccc----cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCC
Confidence 9999999 99999998 9999999997 554 57777761100000 000 000011345999999999999854 9
Q ss_pred eEEEEec
Q 014005 349 NLKVFRY 355 (432)
Q Consensus 349 ~i~iwd~ 355 (432)
.|++||+
T Consensus 365 ~v~iwd~ 371 (447)
T 3dw8_B 365 FFRMFDR 371 (447)
T ss_dssp EEEEEET
T ss_pred EEEEEEc
Confidence 9999999
No 18
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-36 Score=275.67 Aligned_cols=289 Identities=15% Similarity=0.159 Sum_probs=214.3
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeee-ec-CCccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QS-HEPEFDY 106 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~-h~~~~~~ 106 (432)
..|.+.|++++|+|+ +||+|+.|++|+|||+..+.. .....+ .+ |.
T Consensus 11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-------------------------~~~~~~~~~~h~----- 58 (330)
T 2hes_X 11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-------------------------TLIDVLDETAHK----- 58 (330)
T ss_dssp ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-------------------------EEEEEECTTCCC-----
T ss_pred ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-------------------------EEEEEEecCCcc-----
Confidence 368999999999987 999999999999999976431 122344 34 88
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-----eeeeeecCCCCccccccccccccccccccCCCC
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-----VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 181 (432)
..|.+++| +|++++|++|+.|++|++||+.... ......+..|. ..|.+++|+|+
T Consensus 59 -------~~v~~v~~--sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~-----------~~V~~v~~sp~ 118 (330)
T 2hes_X 59 -------KAIRSVAW--RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE-----------NEVKGVAWSND 118 (330)
T ss_dssp -------SCEEEEEE--CTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC---------------CEEEEEECTT
T ss_pred -------CCEEEEEE--CCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCC-----------CcEEEEEECCC
Confidence 89999999 8999999999999999999986421 12333444555 78999999999
Q ss_pred CcceecceeeccceEEEEeeccc-ccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC--ceeeEee
Q 014005 182 FAHGYHLEWTENMATKIANVGNS-VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD--QCFNIVD 257 (432)
Q Consensus 182 ~~~~~~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~--~~~~~~~ 257 (432)
+.++++++. |+.|++||++.. ...+++..+ .+|...|.+++|+|++++|+++ .|++|++||.+ .+ .++..+
T Consensus 119 g~~las~s~--D~~v~iwd~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~-~~~~~~~~~~- 193 (330)
T 2hes_X 119 GYYLATCSR--DKSVWIWETDESGEEYECISVL-QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY-DDDWECVAVL- 193 (330)
T ss_dssp SCEEEEEET--TSCEEEEECCTTCCCCEEEEEE-CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEE-TTEEEEEEEE-
T ss_pred CCEEEEEeC--CCEEEEEeccCCCCCeEEEEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC-CCCeeEEEEc-
Confidence 999999998 999999999532 244667777 7899999999999999999999 99999999987 33 455554
Q ss_pred cCCCCcCCCCcceEEEEEcCC--CCcEEEEEeCCCeEEEEEcccccccc----ccceeecc-cccccCCccceeeeecce
Q 014005 258 MKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCD----HSARILRD-AAESHGSKSFFTEIIASI 330 (432)
Q Consensus 258 ~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~-h~~~~~~~~~~~~~~~~v 330 (432)
.+|...|.+++|+|+ + .+|++|+.|++|++||++++.... .....+.. | ...|
T Consensus 194 ------~~h~~~v~~~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h-------------~~~v 253 (330)
T 2hes_X 194 ------NGHEGTVWSSDFDKTEGV-FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVH-------------KRQV 253 (330)
T ss_dssp ------CCCSSCEEEEEECCSSSS-CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCC-------------SSCE
T ss_pred ------cCCCCcEEEEEecCCCCe-eEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccc-------------ccce
Confidence 899999999999998 5 789999999999999998653110 00223333 4 6899
Q ss_pred eEEEEcCCCCEEEEe-eCCeEEEEecC-c----ceeE-eecceeeeehhhhhcccccccccce--eeEEEEeecccceee
Q 014005 331 SDIKFANDGQHLLSR-DYMNLKVFRYE-P----VMTL-SFCGIYVWILRQLQHSRFMSIYALS--CVIYIITTLYLINLS 401 (432)
Q Consensus 331 ~~~~~s~dg~~l~s~-~~~~i~iwd~~-~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~i~ 401 (432)
.+++|++++ +|+++ .|+.|++||.. . +... ..|.. ..+..+.... ....+++|+.||.|+
T Consensus 254 ~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~----------~~v~~v~~~~~~~~~~las~s~Dg~v~ 322 (330)
T 2hes_X 254 YNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGV----------YEINVVKWLELNGKTILATGGDDGIVN 322 (330)
T ss_dssp EEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTT----------SCEEEEEEC-----CCEEEEETTSEEE
T ss_pred EEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccccc----------ceEEEEEEecCCCceEEEEecCCCcEE
Confidence 999999876 66665 56999999982 1 1111 11210 0111111111 123589999999999
Q ss_pred eecc
Q 014005 402 ALSA 405 (432)
Q Consensus 402 ~~~~ 405 (432)
+|+.
T Consensus 323 ~W~~ 326 (330)
T 2hes_X 323 FWSL 326 (330)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9984
No 19
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=9.8e-37 Score=272.89 Aligned_cols=252 Identities=13% Similarity=0.184 Sum_probs=202.5
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..|.+.|++++|+|+|++||+|+.|++|+|||+++.. .++..++.+|.
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-------------------------~~~~~~l~gH~------- 53 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHE------- 53 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-------------------------BCCCEEECCCS-------
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-------------------------cEEEEEEcccc-------
Confidence 4689999999999999999999999999999997542 12446889999
Q ss_pred hhhhhcceeEEEEEEcC--CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC--Ccc
Q 014005 109 SLEIEEKINRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS--FAH 184 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~ 184 (432)
+.|.+++| ++ ++++|++|+.|++|++||+.+++...+..+..|. ..|.+++|+|+ +.+
T Consensus 54 -----~~V~~v~~--s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~-----------~~v~~v~~~p~~~g~~ 115 (297)
T 2pm7_B 54 -----GPVWRVDW--AHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS-----------ASVNSVQWAPHEYGPM 115 (297)
T ss_dssp -----SCEEEEEE--CCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCS-----------SCEEEEEECCGGGCSE
T ss_pred -----CCeEEEEe--cCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCC-----------CceeEEEeCcCCCCcE
Confidence 99999999 54 4889999999999999999887544444444455 78999999998 788
Q ss_pred eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-------------CCEEEEE-cCCeEEEEeCCCCC
Q 014005 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-------------CETFVSA-DDLRINLWNLEISD 250 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~l~~~-~d~~i~lwd~~~~~ 250 (432)
+++++. |+.+++||++.... .....+ .+|...|.+++|+|+ +++|++| .|++|++||++...
T Consensus 116 l~s~s~--d~~v~~wd~~~~~~-~~~~~~-~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~ 191 (297)
T 2pm7_B 116 LLVASS--DGKVSVVEFKENGT-TSPIII-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (297)
T ss_dssp EEEEET--TSEEEEEEBCSSSC-BCCEEE-ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT
T ss_pred EEEEEC--CCcEEEEEecCCCc-eeeeee-ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence 998888 99999999984311 113344 689999999999997 5689999 99999999998333
Q ss_pred c---eeeEeecCCCCcCCCCcceEEEEEcCCC--CcEEEEEeCCCeEEEEEccccccccccceee--cccccccCCccce
Q 014005 251 Q---CFNIVDMKPSNMDDLTEVITSAEFHPIY--CNLLAYSSSRGFVRLVDMRQSALCDHSARIL--RDAAESHGSKSFF 323 (432)
Q Consensus 251 ~---~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~h~~~~~~~~~~ 323 (432)
. ....+ .+|...|++++|+|++ .++||+++.|++|++||+++..... ....+ ..|
T Consensus 192 ~~~~~~~~l-------~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~-~~~~~~~~~~---------- 253 (297)
T 2pm7_B 192 QTYVLESTL-------EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW-KKTLLKEEKF---------- 253 (297)
T ss_dssp TEEEEEEEE-------CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC-EEEESSSSCC----------
T ss_pred ceEEEEEEe-------cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcc-ceeeeecccC----------
Confidence 2 23333 7899999999999984 3899999999999999998643110 01222 233
Q ss_pred eeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005 324 TEIIASISDIKFANDGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 324 ~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~ 355 (432)
...|.+++|+|+|++||+++ |+.|++|+.
T Consensus 254 ---~~~v~~~~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 254 ---PDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp ---SSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred ---CCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence 57899999999999999974 599999998
No 20
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8.4e-37 Score=282.15 Aligned_cols=248 Identities=13% Similarity=0.157 Sum_probs=212.8
Q ss_pred CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
|.+.|++++|+|+|++|++|+.|+.|++||+++++ .+....+.+|.
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-------------------------~~~~~~~~~h~--------- 52 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-------------------------WVQVHELKEHN--------- 52 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-------------------------EEEEEEEECCS---------
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-------------------------EEeeeeecCCC---------
Confidence 78899999999999999999999999999998864 12446788998
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
..|.+++| +|++++|++++.||.|++||+.+++.........+. ..+.+++|++++.++++++.
T Consensus 53 ---~~v~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~ 116 (372)
T 1k8k_C 53 ---GQVTGVDW--APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN-----------RAARCVRWAPNEKKFAVGSG 116 (372)
T ss_dssp ---SCEEEEEE--ETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCS-----------SCEEEEEECTTSSEEEEEET
T ss_pred ---CcccEEEE--eCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCC-----------CceeEEEECCCCCEEEEEeC
Confidence 99999999 889999999999999999999888755554444444 78999999999999999988
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCC-----------------CCce
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI-----------------SDQC 252 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~-----------------~~~~ 252 (432)
++.+++||++..........+...|...|.+++|+|++++++++ .|+.|++||++. .+..
T Consensus 117 --d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 194 (372)
T 1k8k_C 117 --SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL 194 (372)
T ss_dssp --TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred --CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhh
Confidence 99999999985433333444436789999999999999999999 999999999641 2344
Q ss_pred eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeE
Q 014005 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (432)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~ 332 (432)
+..+ ..|...|++++|+|++ ++|++++.||.|++||+++++. +..+..| ...|.+
T Consensus 195 ~~~~-------~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~-------------~~~v~~ 249 (372)
T 1k8k_C 195 MFES-------SSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMA----VATLASE-------------TLPLLA 249 (372)
T ss_dssp EEEC-------CCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTE----EEEEECS-------------SCCEEE
T ss_pred eEec-------CCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCce----eEEEccC-------------CCCeEE
Confidence 4443 6888999999999999 9999999999999999998876 6777776 679999
Q ss_pred EEEcCCCCEEEEeeCCeEEEEec
Q 014005 333 IKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 333 ~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
++|+|+|++|++|.++.|++||+
T Consensus 250 ~~~~~~~~~l~~~~d~~i~i~~~ 272 (372)
T 1k8k_C 250 VTFITESSLVAAGHDCFPVLFTY 272 (372)
T ss_dssp EEEEETTEEEEEETTSSCEEEEE
T ss_pred EEEecCCCEEEEEeCCeEEEEEc
Confidence 99999999999997799999999
No 21
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.1e-36 Score=272.45 Aligned_cols=295 Identities=13% Similarity=0.076 Sum_probs=226.7
Q ss_pred cccCCCcEEEEEEcCC-CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~-g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
..+|++.|++|+|+|+ +++||||+.|++|+|||+...+.. ...+...+.+|.
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~----------------------~~~~~~~l~~h~----- 86 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN----------------------YGIPQRALRGHS----- 86 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC----------------------SEEEEEEECCCS-----
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc----------------------cceeeEEEeCCC-----
Confidence 3469999999999997 689999999999999999876532 223456788999
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
..|.+++| +|++++|++++.|+.|++|+............. . ..+....+++.+.+++
T Consensus 87 -------~~V~~~~~--s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~l~ 144 (340)
T 4aow_A 87 -------HFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH--T-----------KDVLSVAFSSDNRQIV 144 (340)
T ss_dssp -------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC--S-----------SCEEEEEECTTSSCEE
T ss_pred -------CCEEEEEE--CCCCCEEEEEcccccceEEeecccceeeeecCC--C-----------CceeEEEEeecCccce
Confidence 99999999 899999999999999999999877644333222 2 4566778889999999
Q ss_pred cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC--CEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (432)
+++. |+.+++||... .........+|...+..++|++++ ..++++ .|+.|++||++ ..+....+
T Consensus 145 s~s~--d~~~~~~d~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-~~~~~~~~------- 211 (340)
T 4aow_A 145 SGSR--DKTIKLWNTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA-NCKLKTNH------- 211 (340)
T ss_dssp EEET--TSCEEEECTTS---CEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TTEEEEEE-------
T ss_pred eecC--CCeEEEEEeCC---CceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC-CCceeeEe-------
Confidence 9988 99999999873 333333236889999999998864 467777 99999999999 66666665
Q ss_pred CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (432)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 343 (432)
.+|...|++++|+|++ ++|++|+.||.|++||+++++. +..+.. ...|..+.|+|++.+++
T Consensus 212 ~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~----~~~~~~--------------~~~v~~~~~~~~~~~~~ 272 (340)
T 4aow_A 212 IGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKH----LYTLDG--------------GDIINALCFSPNRYWLC 272 (340)
T ss_dssp CCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEE----EEEEEC--------------SSCEEEEEECSSSSEEE
T ss_pred cCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCce----eeeecC--------------CceEEeeecCCCCceee
Confidence 7899999999999999 9999999999999999998775 566666 36899999999998888
Q ss_pred EeeCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 344 SRDYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 344 s~~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
++.++.|++||+ ..+..+..+.. ..........+..+.......++++|+.||.|++|+.
T Consensus 273 ~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 273 AATGPSIKIWDLEGKIIVDELKQEVI--STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp EEETTEEEEEETTTTEEEEEECCC---------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ccCCCEEEEEECCCCeEEEeccccce--eeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 888899999999 23333332211 0000001112222222222236899999999999993
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.4e-37 Score=278.46 Aligned_cols=265 Identities=17% Similarity=0.256 Sum_probs=218.2
Q ss_pred hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005 6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS 85 (432)
Q Consensus 6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (432)
..+.....|+.... ........|...|.+++|+|+|++|++|+.|+.|++|++.+...
T Consensus 74 s~Dg~v~iWd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~------------------- 131 (340)
T 1got_B 74 SQDGKLIIWDSYTT---NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG------------------- 131 (340)
T ss_dssp ETTTEEEEEETTTC---CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB-------------------
T ss_pred eCCCcEEEEECCCC---CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC-------------------
Confidence 44455666765421 11122335788999999999999999999999999999877532
Q ss_pred cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccc
Q 014005 86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN 165 (432)
Q Consensus 86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 165 (432)
.......+.+|. ..|.++.| ++++ .+++++.|+.|++||+.+++.. ..+..|.
T Consensus 132 ----~~~~~~~~~~h~------------~~v~~~~~--~~~~-~l~s~s~d~~i~~wd~~~~~~~--~~~~~h~------ 184 (340)
T 1got_B 132 ----NVRVSRELAGHT------------GYLSCCRF--LDDN-QIVTSSGDTTCALWDIETGQQT--TTFTGHT------ 184 (340)
T ss_dssp ----SCEEEEEEECCS------------SCEEEEEE--EETT-EEEEEETTSCEEEEETTTTEEE--EEECCCS------
T ss_pred ----cceeEEEecCCC------------ccEEEEEE--CCCC-cEEEEECCCcEEEEECCCCcEE--EEEcCCC------
Confidence 123446788999 99999999 5565 5899999999999999988743 3344455
Q ss_pred ccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEE
Q 014005 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW 244 (432)
Q Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lw 244 (432)
+.|.+++|+|++.++++++. |+.|++||++ ...+...+ .+|...|++++|+|++++|++| .|++|++|
T Consensus 185 -----~~v~~~~~~~~~~~l~sg~~--d~~v~~wd~~---~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iw 253 (340)
T 1got_B 185 -----GDVMSLSLAPDTRLFVSGAC--DASAKLWDVR---EGMCRQTF-TGHESDINAICFFPNGNAFATGSDDATCRLF 253 (340)
T ss_dssp -----SCEEEEEECTTSSEEEEEET--TSCEEEEETT---TCSEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred -----CceEEEEECCCCCEEEEEeC--CCcEEEEECC---CCeeEEEE-cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 78999999999999999998 9999999998 67788888 8999999999999999999999 99999999
Q ss_pred eCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcccee
Q 014005 245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (432)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 324 (432)
|++ .++.+..+ ....+...|++++|+|++ ++|++|+.||.|++||+.+++. ...+.+|
T Consensus 254 d~~-~~~~~~~~-----~~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~----~~~~~~h----------- 311 (340)
T 1got_B 254 DLR-ADQELMTY-----SHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADR----AGVLAGH----------- 311 (340)
T ss_dssp ETT-TTEEEEEE-----CCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE----EEEEECC-----------
T ss_pred ECC-CCcEEEEE-----ccCCcccceEEEEECCCC-CEEEEECCCCeEEEEEcccCcE----eeEeecC-----------
Confidence 999 55555544 123444579999999999 9999999999999999998775 5788887
Q ss_pred eeecceeEEEEcCCCCEEEEee-CCeEEEEe
Q 014005 325 EIIASISDIKFANDGQHLLSRD-YMNLKVFR 354 (432)
Q Consensus 325 ~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd 354 (432)
...|.+++|+|+|++|++|+ |++|++||
T Consensus 312 --~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 312 --DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp --SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred --CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 78999999999999999985 49999997
No 23
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.7e-36 Score=294.58 Aligned_cols=301 Identities=13% Similarity=0.125 Sum_probs=227.4
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
..+|.+.|++++|+|+|++||+|+.|++|+|||+.+++. .....+.+|.
T Consensus 55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~-------------------------~~~~~~~~~~------ 103 (611)
T 1nr0_A 55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-------------------------ILKTTIPVFS------ 103 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC-------------------------CEEEEEECSS------
T ss_pred ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc-------------------------eeeEeecccC------
Confidence 347999999999999999999999999999999876432 1335778898
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCC----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 183 (432)
..|.+++| +|++++|++++.+ +.|++||.. . ....+..|. ..|.+++|+|++.
T Consensus 104 ------~~v~~v~f--s~dg~~l~~~~~~~~~~~~v~~wd~~--~--~~~~l~gh~-----------~~v~~v~f~p~~~ 160 (611)
T 1nr0_A 104 ------GPVKDISW--DSESKRIAAVGEGRERFGHVFLFDTG--T--SNGNLTGQA-----------RAMNSVDFKPSRP 160 (611)
T ss_dssp ------SCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTTC--C--BCBCCCCCS-----------SCEEEEEECSSSS
T ss_pred ------CceEEEEE--CCCCCEEEEEECCCCceeEEEEeeCC--C--CcceecCCC-----------CCceEEEECCCCC
Confidence 99999999 9999999998765 478888843 2 222344555 7899999999987
Q ss_pred c-eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC
Q 014005 184 H-GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (432)
Q Consensus 184 ~-~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~ 261 (432)
+ +++++. |+.+++||.. ..++...+ .+|...|.+++|+|++++|++| .|++|++||+. .++....+.....
T Consensus 161 ~~l~s~s~--D~~v~lwd~~---~~~~~~~l-~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~-~g~~~~~~~~~~~ 233 (611)
T 1nr0_A 161 FRIISGSD--DNTVAIFEGP---PFKFKSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV-DGTKTGVFEDDSL 233 (611)
T ss_dssp CEEEEEET--TSCEEEEETT---TBEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEECBCTTS
T ss_pred eEEEEEeC--CCeEEEEECC---CCeEeeee-ccccCceEEEEECCCCCEEEEEECCCcEEEEECC-CCcEeeeeccccc
Confidence 4 888888 9999999987 67788888 8999999999999999999999 99999999998 5666655411111
Q ss_pred CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccc--------------------------
Q 014005 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE-------------------------- 315 (432)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~-------------------------- 315 (432)
...+|...|.+++|+|++ ++|++++.|++|++||+++++. ...+..+..
T Consensus 234 ~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~ 308 (611)
T 1nr0_A 234 KNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKV----EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 308 (611)
T ss_dssp SSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE----EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEE
T ss_pred cccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCce----eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEE
Confidence 223799999999999999 9999999999999999998764 233322100
Q ss_pred ----ccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEecC---cceeE-eecceeeeehhhhhcccccccccce
Q 014005 316 ----SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRYE---PVMTL-SFCGIYVWILRQLQHSRFMSIYALS 386 (432)
Q Consensus 316 ----~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (432)
.......+.+|...|.+++|+|||++|++++ |++|++||+. ....+ ..|.. .+..+....
T Consensus 309 ~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~-----------~v~~~~~s~ 377 (611)
T 1nr0_A 309 VNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT-----------MITGIKTTS 377 (611)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSS-----------CEEEEEECT
T ss_pred EeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcc-----------eEEEEEECC
Confidence 0000122345688999999999999999985 4999999992 22211 11221 111111111
Q ss_pred eeEEEEeecccceeeeeccC
Q 014005 387 CVIYIITTLYLINLSALSAG 406 (432)
Q Consensus 387 ~~~~~~~g~~~~~i~~~~~~ 406 (432)
. ..+++++.|+.+++|+..
T Consensus 378 ~-~~l~s~s~d~~v~~w~~~ 396 (611)
T 1nr0_A 378 K-GDLFTVSWDDHLKVVPAG 396 (611)
T ss_dssp T-SCEEEEETTTEEEEECSS
T ss_pred C-CcEEEEEcCCceEEeecC
Confidence 1 147789999999999944
No 24
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.2e-37 Score=277.78 Aligned_cols=254 Identities=16% Similarity=0.213 Sum_probs=201.6
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..|.+.|++++|+|+|++||+|+.|++|+|||+.++.. .....+.+|.
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-------------------------~~~~~l~gH~------- 57 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-------------------------ILIADLRGHE------- 57 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-------------------------EEEEEEECCS-------
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-------------------------EEEEEEcCCC-------
Confidence 36899999999999999999999999999999987531 2346788999
Q ss_pred hhhhhcceeEEEEEEcC--CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC--Ccc
Q 014005 109 SLEIEEKINRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS--FAH 184 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~ 184 (432)
..|.+++| ++ ++++|++|+.|++|++||+.++.......+..|. ..|.+++|+|+ +.+
T Consensus 58 -----~~V~~v~~--~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~-----------~~V~~v~~~p~~~g~~ 119 (316)
T 3bg1_A 58 -----GPVWQVAW--AHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHD-----------SSVNSVCWAPHDYGLI 119 (316)
T ss_dssp -----SCEEEEEE--CCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCS-----------SCCCEEEECCTTTCSC
T ss_pred -----ccEEEEEe--CCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCC-----------CceEEEEECCCCCCcE
Confidence 99999999 54 4889999999999999999887644555555555 78999999998 778
Q ss_pred eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-----------------CCEEEEE-cCCeEEEEeC
Q 014005 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-----------------CETFVSA-DDLRINLWNL 246 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------------~~~l~~~-~d~~i~lwd~ 246 (432)
+++++. |+.+++||++..........+ .+|...+.+++|+|+ +++|++| .|++|++||+
T Consensus 120 lasgs~--D~~i~lwd~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~ 196 (316)
T 3bg1_A 120 LACGSS--DGAISLLTYTGEGQWEVKKIN-NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKE 196 (316)
T ss_dssp EEEECS--SSCEEEEEECSSSCEEECCBT-TSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEE
T ss_pred EEEEcC--CCCEEEEecCCCCCcceeeee-ccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEe
Confidence 999988 999999999843222223444 689999999999997 4689999 9999999999
Q ss_pred CCCC--ceeeEeecCCCCcCCCCcceEEEEEcCCC---CcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcc
Q 014005 247 EISD--QCFNIVDMKPSNMDDLTEVITSAEFHPIY---CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS 321 (432)
Q Consensus 247 ~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~ 321 (432)
+..+ .... .+.+|...|++++|+|++ .++|++|+.||+|++||+++..........+..|
T Consensus 197 ~~~~~~~~~~-------~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-------- 261 (316)
T 3bg1_A 197 EEDGQWKEEQ-------KLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF-------- 261 (316)
T ss_dssp CTTSCEEEEE-------CCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC--------
T ss_pred CCCCccceee-------ecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC--------
Confidence 7322 2333 347899999999999985 2689999999999999998632100002344454
Q ss_pred ceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005 322 FFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 322 ~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
...|.+++|+|+|++||++ .|++|++|+.
T Consensus 262 -----~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 262 -----NDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp -----SSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred -----CCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 6799999999999999997 4599999998
No 25
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.3e-36 Score=294.01 Aligned_cols=274 Identities=18% Similarity=0.236 Sum_probs=229.2
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..|.+.|++++|+|++++|++++.|++|++||.+... ...+.+|.
T Consensus 300 ~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~----------------------------~~~~~~~~------- 344 (577)
T 2ymu_A 300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH----------------------------LQTLTGHS------- 344 (577)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE----------------------------EEEECCCS-------
T ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe----------------------------eEEEeCCC-------
Confidence 4688999999999999999999999999999976543 24677888
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..|.+++| +|+++++++++.|+.|++||........+ ..+. ..|.+++|+|++.+++++
T Consensus 345 -----~~v~~~~~--s~~g~~l~~~~~dg~v~~~~~~~~~~~~~---~~~~-----------~~v~~~~~s~dg~~l~~~ 403 (577)
T 2ymu_A 345 -----SSVWGVAF--SPDGQTIASASDDKTVKLWNRNGQLLQTL---TGHS-----------SSVRGVAFSPDGQTIASA 403 (577)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTCCEEEEE---ECCS-----------SCEEEEEECTTSSCEEEE
T ss_pred -----CCEEEEEE--CCCCCEEEEEeCCCEEEEEcCCCCEEEEe---cCCC-----------CCeEEEEECCCCCEEEEE
Confidence 89999999 89999999999999999999754433332 3333 789999999999999999
Q ss_pred eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
+. |+.|++||. ..+.++.+ .+|...|.+++|+|++++++++ .|+.|++||.. ++.+..+ .+|.
T Consensus 404 ~~--d~~v~~~~~----~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~-------~~~~ 467 (577)
T 2ymu_A 404 SD--DKTVKLWNR----NGQLLQTL-TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQLLQTL-------TGHS 467 (577)
T ss_dssp ET--TSEEEEECT----TCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SCEEEEE-------ECCS
T ss_pred eC--CCEEEEEeC----CCCEEEEe-cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CCEEEEE-------cCCC
Confidence 88 999999996 34566777 7899999999999999999999 99999999976 5566655 7899
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~ 347 (432)
..|++++|+|++ ++|++++.|+.|++||.. ++. ++.+.+| ...|++++|+|||++|+++++
T Consensus 468 ~~v~~~~~spd~-~~las~~~d~~i~iw~~~-~~~----~~~~~~h-------------~~~v~~l~~s~dg~~l~s~~~ 528 (577)
T 2ymu_A 468 SSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQL----LQTLTGH-------------SSSVRGVAFSPDGQTIASASD 528 (577)
T ss_dssp SCEEEEEECTTS-CEEEEEETTSEEEEEETT-SCE----EEEEECC-------------SSCEEEEEECTTSSCEEEEET
T ss_pred CCEEEEEEcCCC-CEEEEEeCCCEEEEEcCC-CCE----EEEEeCC-------------CCCEEEEEEcCCCCEEEEEEC
Confidence 999999999999 999999999999999964 554 5788887 789999999999999999755
Q ss_pred -CeEEEEec--CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 348 -MNLKVFRY--EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 348 -~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
+.|++||. +++..+..|... +..+.+....-++++|+.|+.|++||
T Consensus 529 dg~v~lwd~~~~~~~~~~~h~~~-----------v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 529 DKTVKLWNRNGQLLQTLTGHSSS-----------VWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TSEEEEECTTSCEEEEEECCSSC-----------EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cCEEEEEeCCCCEEEEEcCCCCC-----------EEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999 777888877642 22211111222578999999999997
No 26
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.9e-36 Score=273.69 Aligned_cols=277 Identities=13% Similarity=0.240 Sum_probs=214.0
Q ss_pred hhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc
Q 014005 5 REEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT 84 (432)
Q Consensus 5 ~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (432)
+..+.....|++..-...........|.+.|++++|+|+|++||+|+.|++|+||+.+.+.
T Consensus 34 ~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~------------------- 94 (345)
T 3fm0_A 34 CGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD------------------- 94 (345)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC--------------------
T ss_pred EcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC-------------------
Confidence 3445556677654310000011124689999999999999999999999999999987753
Q ss_pred ccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCCcccc
Q 014005 85 STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSS 163 (432)
Q Consensus 85 ~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~ 163 (432)
..+...+.+|. ..|.+++| +|++++|++|+.|+.|++||+..+. ...+..+..|.
T Consensus 95 ------~~~~~~~~~h~------------~~v~~v~~--sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~---- 150 (345)
T 3fm0_A 95 ------FECVTTLEGHE------------NEVKSVAW--APSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT---- 150 (345)
T ss_dssp ------EEEEEEECCCS------------SCEEEEEE--CTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCC----
T ss_pred ------eEEEEEccCCC------------CCceEEEE--eCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcC----
Confidence 23557889999 99999999 8999999999999999999998764 23344445555
Q ss_pred ccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEE
Q 014005 164 ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRIN 242 (432)
Q Consensus 164 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~ 242 (432)
..|.+++|+|++.++++++. |+.+++||.+.. ...+...+ .+|...|.+++|+|++++|+++ .|++|+
T Consensus 151 -------~~v~~~~~~p~~~~l~s~s~--d~~i~~w~~~~~-~~~~~~~~-~~h~~~v~~l~~sp~g~~l~s~s~D~~v~ 219 (345)
T 3fm0_A 151 -------QDVKHVVWHPSQELLASASY--DDTVKLYREEED-DWVCCATL-EGHESTVWSLAFDPSGQRLASCSDDRTVR 219 (345)
T ss_dssp -------SCEEEEEECSSSSCEEEEET--TSCEEEEEEETT-EEEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred -------CCeEEEEECCCCCEEEEEeC--CCcEEEEEecCC-CEEEEEEe-cCCCCceEEEEECCCCCEEEEEeCCCeEE
Confidence 78999999999999999998 999999998732 22455666 7999999999999999999999 999999
Q ss_pred EEeCCCCCc--------------eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccc-
Q 014005 243 LWNLEISDQ--------------CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA- 307 (432)
Q Consensus 243 lwd~~~~~~--------------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~- 307 (432)
+||....+. ++..+ ...|...|.+++|+|++ ..|++++.|+.|++|+...+.......
T Consensus 220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~ 292 (345)
T 3fm0_A 220 IWRQYLPGNEQGVACSGSDPSWKCICTL------SGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQPTF 292 (345)
T ss_dssp EEEEECTTCTTCCCCC---CEEEEEEEE------CSSCSSCEEEEEECTTT-CCEEEEETTSCEEEEEECTTSCTTSCCE
T ss_pred EeccccCCCCccceeeccCCccceeEEe------cCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCCcceeeE
Confidence 999742221 11111 12388899999999999 899999999999999987653211111
Q ss_pred ----eeecccccccCCccceeeeecceeEEEEcCCC-CEEEEee-CCeEEEEec
Q 014005 308 ----RILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 308 ----~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~s~~-~~~i~iwd~ 355 (432)
....+| ...|.+++|+|++ .+||+|+ ||+|++|++
T Consensus 293 ~~~~~~~~~h-------------~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 293 SLTAHLHQAH-------------SQDVNCVAWNPKEPGLLASCSDDGEVAFWKY 333 (345)
T ss_dssp EEEEEETTSS-------------SSCEEEEEECSSSTTEEEEEETTSCEEEEEE
T ss_pred EEEeeecccc-------------cCcEeEeEEeCCCceEEEEcCCCCcEEEEEe
Confidence 122344 7899999999998 4899975 599999999
No 27
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.7e-36 Score=295.19 Aligned_cols=248 Identities=12% Similarity=0.148 Sum_probs=205.3
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
.+.+.+.+++|+|+|++||+++ ++.|+||++.+++.. ..+.+|.
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~---------------------------~~~~~h~-------- 59 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDT---------------------------EIYTEHS-------- 59 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCC---------------------------EEECCCS--------
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccC---------------------------eEecCCC--------
Confidence 4467888999999999999987 569999999876533 6788999
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
..|++++| +|+|++|++|+.|++|+|||+.+++......+..+. +.|.+++|+|++..+++++
T Consensus 60 ----~~v~~~~~--spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~-----------~~v~~v~fs~dg~~l~~~~ 122 (611)
T 1nr0_A 60 ----HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS-----------GPVKDISWDSESKRIAAVG 122 (611)
T ss_dssp ----SCEEEEEE--CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS-----------SCEEEEEECTTSCEEEEEE
T ss_pred ----CceEEEEE--CCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccC-----------CceEEEEECCCCCEEEEEE
Confidence 99999999 999999999999999999999765433333344444 7899999999999998877
Q ss_pred eec--cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 190 WTE--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 190 ~~~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
... .+.+++||.. .+...+ .+|...|++++|+|++. .|++| .|++|++||.+ ..+....+ .+
T Consensus 123 ~~~~~~~~v~~wd~~-----~~~~~l-~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~-~~~~~~~l-------~~ 188 (611)
T 1nr0_A 123 EGRERFGHVFLFDTG-----TSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP-PFKFKSTF-------GE 188 (611)
T ss_dssp CCSSCSEEEEETTTC-----CBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT-TBEEEEEE-------CC
T ss_pred CCCCceeEEEEeeCC-----CCccee-cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC-CCeEeeee-------cc
Confidence 522 2578888853 344456 78999999999999987 58888 99999999998 56666665 89
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeec-------ccccccCCccceeeeecceeEEEEcCC
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR-------DAAESHGSKSFFTEIIASISDIKFAND 338 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~h~~~~~~~~~~~~~~~~v~~~~~s~d 338 (432)
|...|++++|+|++ ++|++|+.|++|++||+++++. ...+. +| ...|.+++|+||
T Consensus 189 H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~~----~~~~~~~~~~~~~h-------------~~~V~~v~~spd 250 (611)
T 1nr0_A 189 HTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTK----TGVFEDDSLKNVAH-------------SGSVFGLTWSPD 250 (611)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE----EEECBCTTSSSCSS-------------SSCEEEEEECTT
T ss_pred ccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCcE----eeeecccccccccc-------------CCCEEEEEECCC
Confidence 99999999999999 9999999999999999998775 35553 44 789999999999
Q ss_pred CCEEEEee-CCeEEEEec---CcceeEe
Q 014005 339 GQHLLSRD-YMNLKVFRY---EPVMTLS 362 (432)
Q Consensus 339 g~~l~s~~-~~~i~iwd~---~~~~~~~ 362 (432)
|++|++++ |++|++||+ +.+.++.
T Consensus 251 g~~l~s~s~D~~v~lWd~~~~~~~~~~~ 278 (611)
T 1nr0_A 251 GTKIASASADKTIKIWNVATLKVEKTIP 278 (611)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEeCCCeEEEEeCCCCceeeeec
Confidence 99999975 499999999 4444443
No 28
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.1e-36 Score=299.58 Aligned_cols=298 Identities=14% Similarity=0.119 Sum_probs=228.2
Q ss_pred cccCCCcEEEEEEcCCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 28 ELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
...|.+.|++++|+|++ ++|++|+.|++|+||++...... .......+.+|.
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~----------------------~~~~~~~~~~h~----- 430 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA----------------------YGVAQRRLTGHS----- 430 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC----------------------SCEEEEEEECCS-----
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc----------------------cccccceecCCC-----
Confidence 34799999999999875 79999999999999999765321 122345788999
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
..|.+++| +|++++|++|+.|++|++||+.++.... .+..|. ..|.+++|+|++.+++
T Consensus 431 -------~~v~~v~~--s~~g~~l~sgs~Dg~v~vwd~~~~~~~~--~~~~h~-----------~~v~~~~~s~~~~~l~ 488 (694)
T 3dm0_A 431 -------HFVEDVVL--SSDGQFALSGSWDGELRLWDLAAGVSTR--RFVGHT-----------KDVLSVAFSLDNRQIV 488 (694)
T ss_dssp -------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEE--EEECCS-----------SCEEEEEECTTSSCEE
T ss_pred -------CcEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCccee--EEeCCC-----------CCEEEEEEeCCCCEEE
Confidence 99999999 8999999999999999999999876432 334455 7899999999999999
Q ss_pred cceeeccceEEEEeecccccceeeEEe--ecCCCCCeeEEEeCCCC--CEEEEE-cCCeEEEEeCCCCCceeeEeecCCC
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVY--PHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~--~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~ 261 (432)
+++. |+.|++||... ....... ..+|...|.+++|+|++ ..++++ .|++|++||++ ..+....+
T Consensus 489 s~s~--D~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~-~~~~~~~~----- 557 (694)
T 3dm0_A 489 SASR--DRTIKLWNTLG---ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS-NCKLRSTL----- 557 (694)
T ss_dssp EEET--TSCEEEECTTS---CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TCCEEEEE-----
T ss_pred EEeC--CCEEEEEECCC---CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC-CCcEEEEE-----
Confidence 9998 99999999863 2222211 14688899999999986 578888 99999999999 56666655
Q ss_pred CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (432)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 341 (432)
.+|...|++++|+|++ ++|++|+.||.|++||+++++. +..+.. ...|.+++|+|++.+
T Consensus 558 --~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~----~~~~~~--------------~~~v~~~~~sp~~~~ 616 (694)
T 3dm0_A 558 --AGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKK----LYSLEA--------------NSVIHALCFSPNRYW 616 (694)
T ss_dssp --CCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEE----EECCBC--------------SSCEEEEEECSSSSE
T ss_pred --cCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCce----EEEecC--------------CCcEEEEEEcCCCcE
Confidence 8899999999999999 9999999999999999998875 455555 367999999999999
Q ss_pred EEEeeCCeEEEEec---CcceeEeecceeeeeh------hhhhcc--cccccccceeeEEEEeecccceeeeeccC
Q 014005 342 LLSRDYMNLKVFRY---EPVMTLSFCGIYVWIL------RQLQHS--RFMSIYALSCVIYIITTLYLINLSALSAG 406 (432)
Q Consensus 342 l~s~~~~~i~iwd~---~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 406 (432)
|+++.++.|++||+ ..+..+..+....... ...... ....+..+....++++|+.||.|++|+.+
T Consensus 617 l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 617 LCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 99998888999999 3444444332100000 000000 00111112222368999999999999853
No 29
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.3e-37 Score=284.89 Aligned_cols=253 Identities=11% Similarity=0.106 Sum_probs=198.8
Q ss_pred CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
+.+.|++++|+|+|++||+|+.|+.|+|||+.++. .+....+.+|.
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-------------------------~~~~~~~~~h~--------- 55 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-------------------------WKHARTFSDHD--------- 55 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-------------------------EEECCCBCCCS---------
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-------------------------eEEEEEEecCC---------
Confidence 45689999999999999999999999999998762 12346788898
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
..|.+++| +|++++|++++.|+.|++||+.++. .........+. ..+.+++|+|++.++++++
T Consensus 56 ---~~v~~~~~--s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~ 119 (377)
T 3dwl_C 56 ---KIVTCVDW--APKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLN-----------RAATFVRWSPNEDKFAVGS 119 (377)
T ss_dssp ---SCEEEEEE--CTTTCCEEEEETTSSEEEC------CCCCEEECCCCS-----------SCEEEEECCTTSSCCEEEE
T ss_pred ---ceEEEEEE--eCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccC-----------CceEEEEECCCCCEEEEEe
Confidence 99999999 8999999999999999999998876 33444444455 7899999999999999999
Q ss_pred eeccceEEEEeecccccceeeEEeecC-CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCc--------------ee
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--------------CF 253 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~--------------~~ 253 (432)
. ++.+++||++......+.+.+ .. |...|.+++|+|++++++++ .|+.|++||++.... ..
T Consensus 120 ~--d~~i~iwd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 196 (377)
T 3dwl_C 120 G--ARVISVCYFEQENDWWVSKHL-KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFN 196 (377)
T ss_dssp S--SSCEEECCC-----CCCCEEE-CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEE
T ss_pred c--CCeEEEEEECCcccceeeeEe-ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchh
Confidence 8 999999999844322346666 45 99999999999999999999 999999999862110 01
Q ss_pred eEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEE
Q 014005 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (432)
Q Consensus 254 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~ 333 (432)
... ..+ +|...|++++|+|++ ++|++++.||.|++||+++++.....+..+.+| ...|.++
T Consensus 197 ~~~----~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------------~~~v~~~ 257 (377)
T 3dwl_C 197 TVC----AEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKLS-------------QLPLRSL 257 (377)
T ss_dssp EEE----ECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCCEECS-------------SSCEEEE
T ss_pred hhh----hcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecCC-------------CCceEEE
Confidence 111 123 888999999999999 999999999999999999877522223566666 7889999
Q ss_pred EEcCCCCEEEEeeCCeEEEEec
Q 014005 334 KFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 334 ~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
+|+|+|++|++|+++.+.+|+.
T Consensus 258 ~~s~~~~~l~~~~~~~~~~~~~ 279 (377)
T 3dwl_C 258 LWANESAIVAAGYNYSPILLQG 279 (377)
T ss_dssp EEEETTEEEEEESSSSEEEECC
T ss_pred EEcCCCCEEEEEcCCcEEEEEe
Confidence 9999999999998866668877
No 30
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.7e-36 Score=268.39 Aligned_cols=265 Identities=16% Similarity=0.234 Sum_probs=218.0
Q ss_pred chhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccc
Q 014005 4 NREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF 83 (432)
Q Consensus 4 ~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 83 (432)
.+..+.....|++.... .......|...|.+++|+|++++|++|+.|++|++||+++++
T Consensus 30 s~~~dg~v~lWd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~------------------ 88 (304)
T 2ynn_A 30 TTLYSGRVELWNYETQV---EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE------------------ 88 (304)
T ss_dssp EEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC------------------
T ss_pred EEcCCCcEEEEECCCCc---eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc------------------
Confidence 33445566778765321 112233578899999999999999999999999999998876
Q ss_pred cccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccc
Q 014005 84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS 163 (432)
Q Consensus 84 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 163 (432)
.+..+.+|. ..|.+++| +|++++|++|+.|++|++||+.++.. ....+..|.
T Consensus 89 ---------~~~~~~~h~------------~~v~~~~~--~~~~~~l~sgs~D~~v~lWd~~~~~~-~~~~~~~h~---- 140 (304)
T 2ynn_A 89 ---------KVVDFEAHP------------DYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWA-LEQTFEGHE---- 140 (304)
T ss_dssp ---------EEEEEECCS------------SCEEEEEE--CSSSSEEEEEETTSCEEEEEGGGTTE-EEEEECCCC----
T ss_pred ---------EEEEEeCCC------------CcEEEEEE--cCCCCEEEEECCCCeEEEEECCCCcc-hhhhhcccC----
Confidence 346789999 99999999 89999999999999999999987642 122234444
Q ss_pred ccccccccccccccCCC-CCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC--CCCEEEEE-cCC
Q 014005 164 ENTLLAEKNFMNEHNPP-SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDL 239 (432)
Q Consensus 164 ~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~-~d~ 239 (432)
..|.+++|+| ++..+++++. |+.|++||++ ...+...+..+|...+..+.++| +++++++| .|+
T Consensus 141 -------~~v~~v~~~p~~~~~l~sgs~--D~~v~iwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~ 208 (304)
T 2ynn_A 141 -------HFVMCVAFNPKDPSTFASGCL--DRTVKVWSLG---QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL 208 (304)
T ss_dssp -------SCEEEEEECTTCTTEEEEEET--TSEEEEEETT---CSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS
T ss_pred -------CcEEEEEECCCCCCEEEEEeC--CCeEEEEECC---CCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC
Confidence 7899999999 5788999988 9999999997 44444444356778899999987 67899999 999
Q ss_pred eEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCC
Q 014005 240 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS 319 (432)
Q Consensus 240 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~ 319 (432)
+|++||++ .++++..+ .+|...|.+++|+|++ ++|++|+.||.|++||+++++. .+.+..|
T Consensus 209 ~i~iWd~~-~~~~~~~~-------~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~~~~----~~~~~~~------ 269 (304)
T 2ynn_A 209 TIKIWDYQ-TKSCVATL-------EGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKV----EKTLNVG------ 269 (304)
T ss_dssp EEEEEETT-TTEEEEEE-------ECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCE----EEEECCS------
T ss_pred eEEEEeCC-CCccceee-------CCCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCCCce----eeeccCC------
Confidence 99999999 67777766 8999999999999999 9999999999999999998876 6788776
Q ss_pred ccceeeeecceeEEEEcCCCC--EEEEeeCCeEEEEec
Q 014005 320 KSFFTEIIASISDIKFANDGQ--HLLSRDYMNLKVFRY 355 (432)
Q Consensus 320 ~~~~~~~~~~v~~~~~s~dg~--~l~s~~~~~i~iwd~ 355 (432)
...+.+++|+|+|. ++++|.++.+.+|++
T Consensus 270 -------~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~ 300 (304)
T 2ynn_A 270 -------LERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (304)
T ss_dssp -------SSSEEEEEECTTCGGGCEEEEETTEEEEEEC
T ss_pred -------CccEEEEEECCCCCceEEEEecCCceEEEEe
Confidence 67899999999875 688998888888887
No 31
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6e-35 Score=265.78 Aligned_cols=282 Identities=15% Similarity=0.188 Sum_probs=226.2
Q ss_pred ccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeee--cCCccc
Q 014005 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEF 104 (432)
Q Consensus 27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~h~~~~ 104 (432)
....|.+.|++++|+|++++|++++ ||.|++|++++++.. .....+. +|.
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~------------------------~~~~~~~~~~~~--- 97 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK------------------------SPVSQLDCLNRD--- 97 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC------------------------SCSEEEECSCTT---
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce------------------------eeeecccccCCC---
Confidence 3457899999999999999999999 999999999876532 1112333 677
Q ss_pred cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
..|.+++| +|+++++++++.|+.|++||+.+++.........+. ..+.+++|+|++.+
T Consensus 98 ---------~~v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----------~~i~~~~~~~~~~~ 155 (337)
T 1gxr_A 98 ---------NYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA-----------PACYALAISPDSKV 155 (337)
T ss_dssp ---------SBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS-----------SCEEEEEECTTSSE
T ss_pred ---------CcEEEEEE--cCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCC-----------CceEEEEECCCCCE
Confidence 89999999 899999999999999999999987744444444444 67899999999999
Q ss_pred eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (432)
+++++. ++.+++||++ ..+....+ ..|...+.+++|+|+++.++++ .|+.|++||++ .++....+
T Consensus 156 l~~~~~--dg~v~~~d~~---~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~~------- 221 (337)
T 1gxr_A 156 CFSCCS--DGNIAVWDLH---NQTLVRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR-EGRQLQQH------- 221 (337)
T ss_dssp EEEEET--TSCEEEEETT---TTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEE-------
T ss_pred EEEEeC--CCcEEEEeCC---CCceeeee-ecccCceEEEEECCCCCEEEEEecCCcEEEEECC-CCceEeee-------
Confidence 999988 9999999998 66778888 7899999999999999999999 99999999999 56655543
Q ss_pred CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (432)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 343 (432)
.+...+.+++|+|++ ++|++++.|+.|++||+++++. ..+..| ...|.+++|+|+|++|+
T Consensus 222 -~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~~-----~~~~~~-------------~~~v~~~~~~~~~~~l~ 281 (337)
T 1gxr_A 222 -DFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDK-----YQLHLH-------------ESCVLSLKFAYCGKWFV 281 (337)
T ss_dssp -ECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCE-----EEECCC-------------SSCEEEEEECTTSSEEE
T ss_pred -cCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCCe-----EEEcCC-------------ccceeEEEECCCCCEEE
Confidence 456779999999999 9999999999999999998764 556665 78999999999999999
Q ss_pred EeeC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 344 SRDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 344 s~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
+++. +.|++||+ +.+... .+. ..+..+.......++++|+.||.+.+|+
T Consensus 282 ~~~~dg~i~~~~~~~~~~~~~~-~~~-----------~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 282 STGKDNLLNAWRTPYGASIFQS-KES-----------SSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEETTSEEEEEETTTCCEEEEE-ECS-----------SCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EecCCCcEEEEECCCCeEEEEe-cCC-----------CcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 9755 99999999 222221 121 1222222222223688899999999998
No 32
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.2e-35 Score=270.66 Aligned_cols=270 Identities=15% Similarity=0.237 Sum_probs=216.8
Q ss_pred chhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccc
Q 014005 4 NREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF 83 (432)
Q Consensus 4 ~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 83 (432)
++..+.....|+.... +.......|...|.+++|+|+|++|++|+.|+.+++|++.......
T Consensus 81 s~s~Dg~v~vWd~~~~---~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~--------------- 142 (354)
T 2pbi_B 81 SSSQDGKVIVWDSFTT---NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN--------------- 142 (354)
T ss_dssp EEETTSEEEEEETTTC---CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC---------------
T ss_pred EEeCCCeEEEEECCCC---CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc---------------
Confidence 3344555667764321 1112233467789999999999999999999999999987543110
Q ss_pred cccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccc
Q 014005 84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS 163 (432)
Q Consensus 84 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 163 (432)
.......+.+|. ..|.+++| +|++..|++++.|++|++||+.+++... .+..|.
T Consensus 143 ------~~~~~~~~~~h~------------~~v~~~~~--~~~~~~l~t~s~D~~v~lwd~~~~~~~~--~~~~h~---- 196 (354)
T 2pbi_B 143 ------MAAKKKSVAMHT------------NYLSACSF--TNSDMQILTASGDGTCALWDVESGQLLQ--SFHGHG---- 196 (354)
T ss_dssp ------SGGGCEEEEECS------------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCCEEE--EEECCS----
T ss_pred ------ccccceeeeccC------------CcEEEEEE--eCCCCEEEEEeCCCcEEEEeCCCCeEEE--EEcCCC----
Confidence 112235677898 99999999 8999999999999999999999887433 333444
Q ss_pred ccccccccccccccCCC--CCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe
Q 014005 164 ENTLLAEKNFMNEHNPP--SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR 240 (432)
Q Consensus 164 ~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~ 240 (432)
..+.++++++ ++.++++++. |+.+++||++ +++++..+ .+|...|++++|+|+++.+++| .|++
T Consensus 197 -------~~v~~~~~~~~~~g~~l~sgs~--Dg~v~~wd~~---~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~ 263 (354)
T 2pbi_B 197 -------ADVLCLDLAPSETGNTFVSGGC--DKKAMVWDMR---SGQCVQAF-ETHESDVNSVRYYPSGDAFASGSDDAT 263 (354)
T ss_dssp -------SCEEEEEECCCSSCCEEEEEET--TSCEEEEETT---TCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred -------CCeEEEEEEeCCCCCEEEEEeC--CCeEEEEECC---CCcEEEEe-cCCCCCeEEEEEeCCCCEEEEEeCCCe
Confidence 6777777766 5679999988 9999999998 77888888 8999999999999999999999 9999
Q ss_pred EEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCc
Q 014005 241 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK 320 (432)
Q Consensus 241 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~ 320 (432)
|++||++ .......+ ....+...+.+++|+|++ ++|++|+.|+.|++||+++++. +..+.+|
T Consensus 264 v~lwd~~-~~~~~~~~-----~~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~----~~~l~~h------- 325 (354)
T 2pbi_B 264 CRLYDLR-ADREVAIY-----SKESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGSR----VSILFGH------- 325 (354)
T ss_dssp EEEEETT-TTEEEEEE-----CCTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSE----EEEECCC-------
T ss_pred EEEEECC-CCcEEEEE-----cCCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCCCce----EEEEECC-------
Confidence 9999999 55555544 112344578999999999 9999999999999999998876 5778887
Q ss_pred cceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEe
Q 014005 321 SFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFR 354 (432)
Q Consensus 321 ~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd 354 (432)
...|++++|+|||++|++|+. ++|++|+
T Consensus 326 ------~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 326 ------ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ------SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ------CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 789999999999999999855 9999996
No 33
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-35 Score=268.43 Aligned_cols=283 Identities=11% Similarity=0.056 Sum_probs=230.5
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
...|.+.|++++|+|+|++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---------------------------~~~~~~~h~------ 74 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE---------------------------RLGTLDGHT------ 74 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC---------------------------EEEEECCCS------
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch---------------------------hhhhhhhcC------
Confidence 45799999999999999999999999999999998765 336788899
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
..|.+++| +|++++|++++.||.|++||+.+++...... +. ..+.+++|+|++.+++.
T Consensus 75 ------~~v~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~-----------~~v~~~~~~~~~~~l~~ 132 (369)
T 3zwl_B 75 ------GTIWSIDV--DCFTKYCVTGSADYSIKLWDVSNGQCVATWK---SP-----------VPVKRVEFSPCGNYFLA 132 (369)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEE---CS-----------SCEEEEEECTTSSEEEE
T ss_pred ------CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEee---cC-----------CCeEEEEEccCCCEEEE
Confidence 99999999 8999999999999999999999887554433 22 67899999999999999
Q ss_pred ceeecc-----ceEEEEeecccccce--------eeEEeecCCCC--CeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCc
Q 014005 188 LEWTEN-----MATKIANVGNSVHAR--------CQKVYPHAHDF--NINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (432)
Q Consensus 188 ~~~~~~-----~~v~i~d~~~~~~~~--------~~~~~~~~~~~--~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~ 251 (432)
+.. + +.+++||+....... ....+ ..|.. .+.+++|+|+++.++++ .|+.|++||++....
T Consensus 133 ~~~--~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 209 (369)
T 3zwl_B 133 ILD--NVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE 209 (369)
T ss_dssp EEC--CBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTE
T ss_pred ecC--CccCCCCEEEEEEecCCccceeecccccceeeec-cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE
Confidence 887 6 899999987542211 22233 34555 89999999999999999 999999999994366
Q ss_pred eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeeccee
Q 014005 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (432)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~ 331 (432)
....+ ..|...|.+++|+|++ ++|++++.||.|++||+++++. ...+.. ...+.
T Consensus 210 ~~~~~-------~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~----~~~~~~--------------~~~~~ 263 (369)
T 3zwl_B 210 YVDSI-------DLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQV----LKKYET--------------DCPLN 263 (369)
T ss_dssp EEEEE-------ECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE----EEEEEC--------------SSCEE
T ss_pred eEEEE-------ecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCce----eeeecC--------------CCCce
Confidence 66655 7788999999999999 9999999999999999998775 455654 57899
Q ss_pred EEEEcCCCCEEEEeeC-C--------------eEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEe
Q 014005 332 DIKFANDGQHLLSRDY-M--------------NLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIIT 393 (432)
Q Consensus 332 ~~~~s~dg~~l~s~~~-~--------------~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (432)
.++|+|+++++++++. + .+++||+ +++..+..|.. .+..+.......++++
T Consensus 264 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s 332 (369)
T 3zwl_B 264 TAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG-----------PLNTVAISPQGTSYAS 332 (369)
T ss_dssp EEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS-----------CEEEEEECTTSSEEEE
T ss_pred eEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC-----------cEEEEEECCCCCEEEE
Confidence 9999999999999744 5 8999999 56666666543 2222222222236889
Q ss_pred ecccceeeeecc
Q 014005 394 TLYLINLSALSA 405 (432)
Q Consensus 394 g~~~~~i~~~~~ 405 (432)
|+.||.|.+|+.
T Consensus 333 ~~~dg~v~iw~~ 344 (369)
T 3zwl_B 333 GGEDGFIRLHHF 344 (369)
T ss_dssp EETTSEEEEEEE
T ss_pred EcCCCeEEEEEC
Confidence 999999999994
No 34
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.7e-35 Score=271.65 Aligned_cols=247 Identities=14% Similarity=0.119 Sum_probs=195.2
Q ss_pred ccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
...+|.+.|++++|+|++++| +++.||+|+|||+.+++.. ........+|.
T Consensus 89 ~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~-----------------------~~~~~~~~~h~----- 139 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESL-----------------------LVNKFAKYEHD----- 139 (357)
T ss_dssp EEEECSSCEEEEEEETTTEEE-EEETTSCEEEC-------------------------------CCCCEEECCCS-----
T ss_pred ccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeecccccee-----------------------EEEeeccCCCC-----
Confidence 345788999999999998755 5678999999999886532 01112345788
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc-ce
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HG 185 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~ 185 (432)
..|.+++| +|++++|++|+.|+.|++||+.+++.. ..+..|. ..|.+++|++++. .+
T Consensus 140 -------~~V~~v~~--spdg~~l~sgs~dg~v~iwd~~~~~~~--~~~~~h~-----------~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 140 -------DIVKTLSV--FSDGTQAVSGGKDFSVKVWDLSQKAVL--KSYNAHS-----------SEVNCVAACPGKDTIF 197 (357)
T ss_dssp -------SCEEEEEE--CSSSSEEEEEETTSCEEEEETTTTEEE--EEECCCS-----------SCEEEEEECTTCSSCE
T ss_pred -------CCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCcEE--EEEcCCC-----------CCEEEEEEccCCCcee
Confidence 99999999 899999999999999999999988743 3344455 7899999999875 66
Q ss_pred ecceeeccceEEEEeecccccceeeEEe-ecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC
Q 014005 186 YHLEWTENMATKIANVGNSVHARCQKVY-PHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (432)
Q Consensus 186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~ 262 (432)
++++. |+.|++||++ ..++...+ ...+...+.+++|+|+ +.++++| .|+.|++||++ ..+....+
T Consensus 198 ~s~~~--dg~v~~wd~~---~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~-~~~~~~~~------ 265 (357)
T 4g56_B 198 LSCGE--DGRILLWDTR---KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK-NPDSAQTS------ 265 (357)
T ss_dssp EEEET--TSCEEECCTT---SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS-CGGGCEEE------
T ss_pred eeecc--CCceEEEECC---CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC-CCcEeEEE------
Confidence 77777 9999999998 44444333 1456778999999997 4678888 99999999999 66666665
Q ss_pred cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC-CCCE
Q 014005 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQH 341 (432)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-dg~~ 341 (432)
.+|...|++++|+|++.++||+|+.|++|+|||+++++. ++ ..+| ...|++++|+| |+++
T Consensus 266 -~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~----~~-~~~H-------------~~~V~~vafsP~d~~~ 326 (357)
T 4g56_B 266 -AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV----FR-DLSH-------------RDFVTGVAWSPLDHSK 326 (357)
T ss_dssp -CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE----EE-ECCC-------------SSCEEEEEECSSSTTE
T ss_pred -eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE----eE-ECCC-------------CCCEEEEEEeCCCCCE
Confidence 789999999999999867899999999999999998875 33 3466 78999999998 7999
Q ss_pred EEEee-CCeEEEEec
Q 014005 342 LLSRD-YMNLKVFRY 355 (432)
Q Consensus 342 l~s~~-~~~i~iwd~ 355 (432)
|++|+ |++|++||+
T Consensus 327 l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 327 FTTVGWDHKVLHHHL 341 (357)
T ss_dssp EEEEETTSCEEEEEC
T ss_pred EEEEcCCCeEEEEEC
Confidence 99975 599999999
No 35
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.5e-35 Score=263.00 Aligned_cols=270 Identities=19% Similarity=0.279 Sum_probs=209.9
Q ss_pred chhhccccchhhhhhh---hcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcc
Q 014005 4 NREEASASLEWKCSQA---FGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQ 80 (432)
Q Consensus 4 ~~~~~~~~~~w~~~~~---~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 80 (432)
++..+.....|++... ++ ........|...|++++|+|+|++|++|+.|++|+|||+.+++
T Consensus 35 s~s~D~~v~~W~~~~~~~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~--------------- 98 (319)
T 3frx_A 35 SASRDKTLISWKLTGDDQKFG-VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE--------------- 98 (319)
T ss_dssp EEETTSEEEEEEEEEETTEEE-EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------------
T ss_pred EecCCccEEEecCCCCCcccc-ccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC---------------
Confidence 3445556677876521 11 0011234689999999999999999999999999999998875
Q ss_pred ccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCc
Q 014005 81 MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF 160 (432)
Q Consensus 81 ~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 160 (432)
....+.+|. ..|.+++| +|++.++++|+.|++|++||+.......+ ..|.
T Consensus 99 ------------~~~~~~~h~------------~~v~~~~~--~~~~~~l~s~s~D~~i~vwd~~~~~~~~~---~~h~- 148 (319)
T 3frx_A 99 ------------TYQRFVGHK------------SDVMSVDI--DKKASMIISGSRDKTIKVWTIKGQCLATL---LGHN- 148 (319)
T ss_dssp ------------EEEEEECCS------------SCEEEEEE--CTTSCEEEEEETTSCEEEEETTSCEEEEE---CCCS-
T ss_pred ------------eeEEEccCC------------CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCeEEEE---eccC-
Confidence 346889999 99999999 89999999999999999999976543333 3333
Q ss_pred cccccccccccccccccCCCCC------cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEE
Q 014005 161 VSSENTLLAEKNFMNEHNPPSF------AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV 234 (432)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 234 (432)
..+..+.+.|.. ..+++++. |+.|++||++ ..++...+ .+|...|.+++|+|++++|+
T Consensus 149 ----------~~v~~~~~~~~~~~~~~~~~l~s~~~--d~~i~~wd~~---~~~~~~~~-~~h~~~v~~~~~sp~g~~l~ 212 (319)
T 3frx_A 149 ----------DWVSQVRVVPNEKADDDSVTIISAGN--DKMVKAWNLN---QFQIEADF-IGHNSNINTLTASPDGTLIA 212 (319)
T ss_dssp ----------SCEEEEEECCC------CCEEEEEET--TSCEEEEETT---TTEEEEEE-CCCCSCEEEEEECTTSSEEE
T ss_pred ----------CcEEEEEEccCCCCCCCccEEEEEeC--CCEEEEEECC---cchhheee-cCCCCcEEEEEEcCCCCEEE
Confidence 677888888754 47788877 9999999998 66777777 79999999999999999999
Q ss_pred EE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccc
Q 014005 235 SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA 313 (432)
Q Consensus 235 ~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h 313 (432)
+| .|+.|++||++ .++.+..+ .. ...|.+++|+|++ .+|++++.+ .+++|++..+.. ...+..+
T Consensus 213 s~~~dg~i~iwd~~-~~~~~~~~-------~~-~~~v~~~~~sp~~-~~la~~~~~-~i~v~~~~~~~~----~~~~~~~ 277 (319)
T 3frx_A 213 SAGKDGEIMLWNLA-AKKAMYTL-------SA-QDEVFSLAFSPNR-YWLAAATAT-GIKVFSLDPQYL----VDDLRPE 277 (319)
T ss_dssp EEETTCEEEEEETT-TTEEEEEE-------EC-CSCEEEEEECSSS-SEEEEEETT-EEEEEEETTEEE----EEEECCC
T ss_pred EEeCCCeEEEEECC-CCcEEEEe-------cC-CCcEEEEEEcCCC-CEEEEEcCC-CcEEEEeCcCee----eeccCcc
Confidence 99 99999999999 66666655 33 3579999999999 888887754 699999987654 2333321
Q ss_pred ccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005 314 AESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~ 355 (432)
. ......+...+.+++|+|||++|++|+ |+.|++||+
T Consensus 278 ~-----~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 278 F-----AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp C-----TTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred c-----cccccCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence 0 000111256789999999999999985 499999997
No 36
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.2e-35 Score=272.18 Aligned_cols=294 Identities=12% Similarity=0.070 Sum_probs=222.8
Q ss_pred ccCCCcEEEEEEcCCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
..|.+.|++++|+|+| ++|++|+.||.|+|||+.+++.. ......+|.
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------~~~~~~~h~------ 118 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-------------------------SFIQGMGPG------ 118 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE-------------------------EEECCCSTT------
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc-------------------------eeeecCCcC------
Confidence 4688999999999999 99999999999999999876532 112234688
Q ss_pred chhhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 108 KSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
..|.+++| +| ++++|++++.|+.|++||+.+.....+.....+. ..+.+++|+|++.+++
T Consensus 119 ------~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~ 179 (383)
T 3ei3_B 119 ------DAITGMKF--NQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWD-----------YWYCCVDVSVSRQMLA 179 (383)
T ss_dssp ------CBEEEEEE--ETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSS-----------CCEEEEEEETTTTEEE
T ss_pred ------CceeEEEe--CCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCC-----------CCeEEEEECCCCCEEE
Confidence 99999999 78 6789999999999999999976655555444444 6799999999999999
Q ss_pred cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCC---CceeeEeecCCC
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEIS---DQCFNIVDMKPS 261 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~---~~~~~~~~~~~~ 261 (432)
+++. ++.|++||++ .+++..+ .+|...|.+++|+|+++ +++++ .|+.|++||++.. ...+..
T Consensus 180 ~~~~--d~~i~i~d~~----~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------ 246 (383)
T 3ei3_B 180 TGDS--TGRLLLLGLD----GHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE------ 246 (383)
T ss_dssp EEET--TSEEEEEETT----SCEEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE------
T ss_pred EECC--CCCEEEEECC----CCEEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE------
Confidence 9988 9999999984 4566677 78999999999999999 88898 9999999999832 333433
Q ss_pred CcCCCCcceEEEEEcC-CCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCC-c----cceeeeecceeEEEE
Q 014005 262 NMDDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-K----SFFTEIIASISDIKF 335 (432)
Q Consensus 262 ~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~-~----~~~~~~~~~v~~~~~ 335 (432)
.+|...|++++|+| ++ ++|++++.|+.|++||+++++. ...+.+|...... . ..+. ....+..++|
T Consensus 247 --~~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~ 318 (383)
T 3ei3_B 247 --MPHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSK----PDQIIIHPHRQFQHLTPIKATWH-PMYDLIVAGR 318 (383)
T ss_dssp --EECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTS----CSEEEECCBCCCTTSCCCCCEEC-SSSSEEEEEC
T ss_pred --ecCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCcc----ccccccccccccccccceEEecc-CCCCceEEEe
Confidence 35888999999999 98 9999999999999999998775 4555554211100 0 0000 0234556778
Q ss_pred cCCCCEEEEe-eCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 336 ANDGQHLLSR-DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 336 s~dg~~l~s~-~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
+|||++ +| .++.|++||+ +++..+..+.. ...++.+.......++++|+ |+.|.+|+.
T Consensus 319 s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~---------~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 319 YPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA---------AGIISLNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp BCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB---------CSCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred cCCccc--ccCCCCeEEEEecCCCceeeeecCCCC---------CceEEEEEEecCccEEEEec-CCcEEEEec
Confidence 888877 54 5599999999 56666665331 11222212222223577776 899999994
No 37
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.1e-35 Score=270.67 Aligned_cols=239 Identities=16% Similarity=0.242 Sum_probs=201.5
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
...|++++|+|+|++||+|+.|++|+|||+++++ ....+.+|.
T Consensus 123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~---------------------------~~~~~~~h~---------- 165 (393)
T 1erj_A 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK---------------------------IVMILQGHE---------- 165 (393)
T ss_dssp CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS----------
T ss_pred ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---------------------------EEEEEccCC----------
Confidence 3359999999999999999999999999998765 336788999
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC-CCcceeccee
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHGYHLEW 190 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~ 190 (432)
..|.+++| +|++++|++++.|++|++||+.+++........ ..+..++++| ++.++++++.
T Consensus 166 --~~v~~~~~--~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~l~~~s~ 227 (393)
T 1erj_A 166 --QDIYSLDY--FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE--------------DGVTTVAVSPGDGKYIAAGSL 227 (393)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECS--------------SCEEEEEECSTTCCEEEEEET
T ss_pred --CCEEEEEE--cCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC--------------CCcEEEEEECCCCCEEEEEcC
Confidence 99999999 899999999999999999999988754433321 5688899998 8899999988
Q ss_pred eccceEEEEeecccccceeeEEee------cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC-----------ce
Q 014005 191 TENMATKIANVGNSVHARCQKVYP------HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-----------QC 252 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~-----------~~ 252 (432)
|+.|++||++ .+.++..+. .+|...|.+++|+|+++++++| .|+.|++||++... .+
T Consensus 228 --d~~v~iwd~~---~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~ 302 (393)
T 1erj_A 228 --DRAVRVWDSE---TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 302 (393)
T ss_dssp --TSCEEEEETT---TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CE
T ss_pred --CCcEEEEECC---CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcc
Confidence 9999999998 444444431 4688999999999999999999 99999999997321 12
Q ss_pred eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeE
Q 014005 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (432)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~ 332 (432)
... +.+|...|.+++|+|++ .+|++|+.||.|++||+++++. +..+.+| ...|.+
T Consensus 303 ~~~-------~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~~~~----~~~l~~h-------------~~~v~~ 357 (393)
T 1erj_A 303 EVT-------YIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNP----LLMLQGH-------------RNSVIS 357 (393)
T ss_dssp EEE-------EECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCE----EEEEECC-------------SSCEEE
T ss_pred eEE-------EecccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCeE----EEEECCC-------------CCCEEE
Confidence 222 36899999999999999 9999999999999999998876 6788887 789999
Q ss_pred EEEcC------CCCEEEEee-CCeEEEEec
Q 014005 333 IKFAN------DGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 333 ~~~s~------dg~~l~s~~-~~~i~iwd~ 355 (432)
++|++ ++.+|++|+ |++|++|++
T Consensus 358 v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 358 VAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp EEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred EEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 99986 688999975 599999998
No 38
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2e-35 Score=278.91 Aligned_cols=291 Identities=13% Similarity=0.071 Sum_probs=210.6
Q ss_pred cCCCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 30 ~h~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
.|.+.|+||+|+| ++++||+|+.||+|+|||+.+++.. ....+.+|.
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-------------------------~~~~~~gH~------- 164 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-------------------------TFIKGIGAG------- 164 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-------------------------EEECCCSSS-------
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-------------------------eEEEccCCC-------
Confidence 5678899999999 5679999999999999999876532 334567898
Q ss_pred hhhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 109 SLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
+.|++|+| +| ++++|++|+.||+|++||++++....+....... ..+.+++|++++.++++
T Consensus 165 -----~~V~~l~f--~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~ 226 (435)
T 4e54_B 165 -----GSITGLKF--NPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTIN-----------IWFCSLDVSASSRMVVT 226 (435)
T ss_dssp -----CCCCEEEE--CSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCS-----------CCCCCEEEETTTTEEEE
T ss_pred -----CCEEEEEE--eCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCC-----------ccEEEEEECCCCCEEEE
Confidence 99999999 76 6889999999999999999887655554444333 56788999999999999
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
|+. ++.|++||++. +++..+ .+|...|.+++|+|+++ ++++| .|+.|++||++. ......+ ....+
T Consensus 227 g~~--dg~i~~wd~~~----~~~~~~-~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~-~~~~~~~----~~~~~ 294 (435)
T 4e54_B 227 GDN--VGNVILLNMDG----KELWNL-RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ-VRGKASF----LYSLP 294 (435)
T ss_dssp ECS--SSBEEEEESSS----CBCCCS-BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTT-CCSSSCC----SBCCB
T ss_pred EeC--CCcEeeeccCc----ceeEEE-ecccceEEeeeecCCCceEEEEecCcceeeEEeccc-ccccceE----EEeee
Confidence 998 99999999863 345556 78999999999999876 67778 899999999983 3322211 12367
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~ 345 (432)
|...|++++|+|++ ++|++++.||.|++||++++.. ...+..|...... ...+....|+|++.+++++
T Consensus 295 h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~----~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 362 (435)
T 4e54_B 295 HRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDC----PLGLIPHPHRHFQ-------HLTPIKAAWHPRYNLIVVG 362 (435)
T ss_dssp CSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSS----EEEECCCCCCCCS-------SSCCCBCEECSSSSCEEEE
T ss_pred ccccccceeECCCC-CeeEEEcCCCEEEEEECCCCcc----ceEEecccccccc-------cceeEEEEEcCCCCEEEEE
Confidence 89999999999999 9999999999999999998775 3555554211110 0112234455555444443
Q ss_pred ------------eC-CeEEEEec---CcceeEeecceeeeehhhhhccccccc-ccceeeEEEEeecccceeeeecc
Q 014005 346 ------------DY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSI-YALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 346 ------------~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
.+ +.|++||. +.+..+..+. ...+..+ .++....++++|+ |+.|.+|+.
T Consensus 363 ~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~----------~~~v~s~~~fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 363 RYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE----------SSGISSLNEFNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp CCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS----------CCCCCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred EcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC----------CCcEEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence 23 68999999 4444443221 1122221 1111122467776 789999994
No 39
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-34 Score=263.70 Aligned_cols=253 Identities=14% Similarity=0.195 Sum_probs=192.7
Q ss_pred CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
|.+.|++++|+|+|++||+|+.|++|+||+++..... .........+.+|.
T Consensus 57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~--------------------~~~~~~~~~~~~h~--------- 107 (330)
T 2hes_X 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR--------------------TFEMDLLAIIEGHE--------- 107 (330)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEEC---------------------------CCCEEEEEEC------------
T ss_pred ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc--------------------cccceeEEEEcCCC---------
Confidence 8999999999999999999999999999998653210 00123456788999
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc-c-eeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-K-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..|.+++| +|++++|++|+.|++|++||+... . .+.+..+..|. ..|.+++|+|++.+++++
T Consensus 108 ---~~V~~v~~--sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~-----------~~v~~v~~~p~~~~l~s~ 171 (330)
T 2hes_X 108 ---NEVKGVAW--SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHS-----------QDVKHVIWHPSEALLASS 171 (330)
T ss_dssp ----CEEEEEE--CTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCS-----------SCEEEEEECSSSSEEEEE
T ss_pred ---CcEEEEEE--CCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCC-----------CceEEEEECCCCCEEEEE
Confidence 99999999 899999999999999999999532 2 23344455555 789999999999999999
Q ss_pred eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCCCCC-------ceeeEeec
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISD-------QCFNIVDM 258 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~-~d~~i~lwd~~~~~-------~~~~~~~~ 258 (432)
+. |+.|++||.... ...++..+ .+|...|.+++|+|+ +..+++| .|++|++||++... .+...+
T Consensus 172 s~--D~~i~iW~~~~~-~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~-- 245 (330)
T 2hes_X 172 SY--DDTVRIWKDYDD-DWECVAVL-NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAIL-- 245 (330)
T ss_dssp ET--TSCEEEEEEETT-EEEEEEEE-CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEEC--
T ss_pred cC--CCeEEEEECCCC-CeeEEEEc-cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeec--
Confidence 98 999999998732 23677778 899999999999998 6789999 99999999997221 122222
Q ss_pred CCCCcC-CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeec-ceeEEEEc
Q 014005 259 KPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDIKFA 336 (432)
Q Consensus 259 ~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~-~v~~~~~s 336 (432)
. .|...|.+++|+++ .+|++++.||.|++||..+++... ....+.+| .. .|.+++|+
T Consensus 246 -----~~~h~~~v~~v~~s~~--~~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~h-------------~~~~v~~v~~~ 304 (330)
T 2hes_X 246 -----PDVHKRQVYNVAWGFN--GLIASVGADGVLAVYEEVDGEWKV-FAKRALCH-------------GVYEINVVKWL 304 (330)
T ss_dssp -----CSCCSSCEEEEEECTT--SCEEEEETTSCEEEEEEETTEEEE-EEEESCTT-------------TTSCEEEEEEC
T ss_pred -----ccccccceEEEEEcCC--CEEEEEeCCCEEEEEEcCCCceEE-Eecccccc-------------ccceEEEEEEe
Confidence 3 38899999999976 478999999999999998763100 01223455 44 89999999
Q ss_pred C--CCCEEEEee-CCeEEEEec
Q 014005 337 N--DGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 337 ~--dg~~l~s~~-~~~i~iwd~ 355 (432)
| ++++|++|+ |++|++||+
T Consensus 305 ~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 305 ELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp -----CCEEEEETTSEEEEEEC
T ss_pred cCCCceEEEEecCCCcEEEEEe
Confidence 9 789999975 599999997
No 40
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.9e-34 Score=263.47 Aligned_cols=279 Identities=13% Similarity=0.202 Sum_probs=207.3
Q ss_pred chhhccccchhhhhhhhcC----CCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhc
Q 014005 4 NREEASASLEWKCSQAFGE----RNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEK 79 (432)
Q Consensus 4 ~~~~~~~~~~w~~~~~~~~----~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 79 (432)
++..+.....|++...-.. ........|.+.|++++|+|++.+|++|+.|++|++||+.+++
T Consensus 44 sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~-------------- 109 (343)
T 2xzm_R 44 SGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT-------------- 109 (343)
T ss_dssp EEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC--------------
T ss_pred EEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc--------------
Confidence 3344556677876531000 0112234789999999999999999999999999999998865
Q ss_pred cccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCC
Q 014005 80 QMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP 159 (432)
Q Consensus 80 ~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 159 (432)
....+.+|. ..|.+++| +|++++|++++.|+.|++||+.............+.
T Consensus 110 -------------~~~~~~~h~------------~~v~~v~~--sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 162 (343)
T 2xzm_R 110 -------------TYKRFVGHQ------------SEVYSVAF--SPDNRQILSAGAEREIKLWNILGECKFSSAEKENHS 162 (343)
T ss_dssp -------------EEEEEECCC------------SCEEEEEE--CSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCS
T ss_pred -------------EEEEEcCCC------------CcEEEEEE--CCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCC
Confidence 336788999 99999999 899999999999999999999754332222222333
Q ss_pred ccccccccccccccccccCCCCC----------cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC
Q 014005 160 FVSSENTLLAEKNFMNEHNPPSF----------AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD 229 (432)
Q Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 229 (432)
..+.+++|+|++ .++++++. |+.|++||. .......+ .+|...|.+++|+|+
T Consensus 163 -----------~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~--d~~i~iwd~----~~~~~~~~-~~h~~~v~~~~~s~~ 224 (343)
T 2xzm_R 163 -----------DWVSCVRYSPIMKSANKVQPFAPYFASVGW--DGRLKVWNT----NFQIRYTF-KAHESNVNHLSISPN 224 (343)
T ss_dssp -----------SCEEEEEECCCCCSCSCCCSSCCEEEEEET--TSEEEEEET----TTEEEEEE-ECCSSCEEEEEECTT
T ss_pred -----------ceeeeeeeccccccccccCCCCCEEEEEcC--CCEEEEEcC----CCceeEEE-cCccccceEEEECCC
Confidence 678888888876 67888887 999999994 34566666 789999999999999
Q ss_pred CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccce
Q 014005 230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 308 (432)
Q Consensus 230 ~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 308 (432)
+++|++| .|+.|++||+.........+ .+...|.+++|+|++ ++++++ .|+.|++||+.+++... ..
T Consensus 225 g~~l~sgs~dg~v~iwd~~~~~~~~~~~--------~~~~~v~~v~~sp~~-~~la~~-~d~~v~iw~~~~~~~~~--~~ 292 (343)
T 2xzm_R 225 GKYIATGGKDKKLLIWDILNLTYPQREF--------DAGSTINQIAFNPKL-QWVAVG-TDQGVKIFNLMTQSKAP--VC 292 (343)
T ss_dssp SSEEEEEETTCEEEEEESSCCSSCSEEE--------ECSSCEEEEEECSSS-CEEEEE-ESSCEEEEESSSCCSCS--EE
T ss_pred CCEEEEEcCCCeEEEEECCCCcccceee--------cCCCcEEEEEECCCC-CEEEEE-CCCCEEEEEeCCCCCCc--eE
Confidence 9999999 99999999996344433332 234569999999998 877655 57889999998765421 11
Q ss_pred eecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005 309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 309 ~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~ 355 (432)
.+..++. .......+|...|.+++|+|+|++|++|+ ||.|++||+
T Consensus 293 ~~~~~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 293 TIEAEPI--TKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp ECCCCSG--GGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred EeecCcc--hhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEE
Confidence 3321100 00001122467899999999999999985 599999997
No 41
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-35 Score=274.94 Aligned_cols=281 Identities=17% Similarity=0.243 Sum_probs=219.0
Q ss_pred cchhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccc
Q 014005 3 LNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMD 82 (432)
Q Consensus 3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 82 (432)
+++..+.....|...... .......|...|.+++|+|+|++||+|+.|+.+++|++.+....
T Consensus 82 ~s~s~D~~v~iWd~~~~~---~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~--------------- 143 (380)
T 3iz6_a 82 VSASQDGRLIVWNALTSQ---KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR--------------- 143 (380)
T ss_dssp EEEETTSEEEEEETTTTE---EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC---------------
T ss_pred EEEeCCCeEEEEECCCCc---cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc---------------
Confidence 344555666778764311 11223458889999999999999999999999999999764311
Q ss_pred ccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcceeeeeec---CCC
Q 014005 83 FTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEM---DHF 158 (432)
Q Consensus 83 ~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~ 158 (432)
.........+.+|. +.|.++.| .|+ +..|++|+.|++|++||+.+++....... ..|
T Consensus 144 -----~~~~~~~~~~~gh~------------~~v~~~~~--~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h 204 (380)
T 3iz6_a 144 -----DGNMPVSRVLTGHK------------GYASSCQY--VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH 204 (380)
T ss_dssp -----CCSSTTCCBCCCCS------------SCCCCCBC--CSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSC
T ss_pred -----cCCccceeeccCCC------------cceEEEEE--ecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCC
Confidence 00122335678898 89999999 665 45799999999999999998875443321 223
Q ss_pred CccccccccccccccccccCCC-CCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-
Q 014005 159 PFVSSENTLLAEKNFMNEHNPP-SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA- 236 (432)
Q Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~- 236 (432)
. ..+.++.+++ ++.++++++. |+.|++||++. ...+++.+ .+|.+.|++++|+|++++|++|
T Consensus 205 ~-----------~~v~~~~~~~~~~~~l~sgs~--D~~v~~wd~~~--~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s 268 (380)
T 3iz6_a 205 T-----------ADVLSLSINSLNANMFISGSC--DTTVRLWDLRI--TSRAVRTY-HGHEGDINSVKFFPDGQRFGTGS 268 (380)
T ss_dssp C-----------SCEEEEEECSSSCCEEEEEET--TSCEEEEETTT--TCCCCEEE-CCCSSCCCEEEECTTSSEEEEEC
T ss_pred c-----------cCeEEEEeecCCCCEEEEEEC--CCeEEEEECCC--CCcceEEE-CCcCCCeEEEEEecCCCeEEEEc
Confidence 3 6788888876 7888999988 99999999973 23566777 7999999999999999999999
Q ss_pred cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceee----cc
Q 014005 237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL----RD 312 (432)
Q Consensus 237 ~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~ 312 (432)
.|++|++||++ ++..+..+...+.....+...|++++|+|++ ++|++|+.||.|++||+.+++. ...+ .+
T Consensus 269 ~D~~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~----~~~~~~~~~~ 342 (380)
T 3iz6_a 269 DDGTCRLFDMR-TGHQLQVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEM----VLNLGTLQNS 342 (380)
T ss_dssp SSSCEEEEETT-TTEEEEEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCE----EEEECCSCSS
T ss_pred CCCeEEEEECC-CCcEEEEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCce----EEEEecccCC
Confidence 99999999999 6777776643333333444568999999999 9999999999999999988765 3333 45
Q ss_pred cccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 313 h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~ 355 (432)
| .+.|.+++|+|||++|++|+ |++|++|++
T Consensus 343 h-------------~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 343 H-------------EGRISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp C-------------CCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred C-------------CCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 5 78999999999999999985 499999998
No 42
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.6e-35 Score=272.04 Aligned_cols=314 Identities=10% Similarity=0.058 Sum_probs=224.7
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..|.+.|++++|+| ++|++|+.||.|++|++++++.. ........+.+|.
T Consensus 13 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~---------------------~~~~~~~~~~~h~------- 62 (397)
T 1sq9_A 13 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE---------------------NPKDKSYSHFVHK------- 62 (397)
T ss_dssp SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC---------------------CGGGGEEEEECCT-------
T ss_pred hhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc---------------------cCCCcceEEecCC-------
Confidence 36899999999999 89999999999999999886521 0123446788898
Q ss_pred hhhhhcceeEEEEEEcCC----C---CEEEEEeCCCeEEEEEccCcce------eeeeecCCCCcccccccccccccccc
Q 014005 109 SLEIEEKINRVRWCAAPN----G---SMFILSTNDKTIKLWKVRDQKV------KKIKEMDHFPFVSSENTLLAEKNFMN 175 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~----~---~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (432)
..|.+++| +|+ + ++|++++.|+.|++||+.+++. ..+..+..+ .....|.+
T Consensus 63 -----~~v~~~~~--~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~ 126 (397)
T 1sq9_A 63 -----SGLHHVDV--LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD---------MKKHSFWA 126 (397)
T ss_dssp -----TCEEEEEE--EEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT---------GGGSCEEE
T ss_pred -----CcEEEEEE--ecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccc---------cCCCcEEE
Confidence 99999999 667 8 9999999999999999987762 232222111 00268999
Q ss_pred ccCC----CCCcc-eecceeeccceEEEEeecccc---cceeeE-----Eee------cCCCCCeeEEEeCCCCCEEEEE
Q 014005 176 EHNP----PSFAH-GYHLEWTENMATKIANVGNSV---HARCQK-----VYP------HAHDFNINSISNNSDCETFVSA 236 (432)
Q Consensus 176 ~~~~----~~~~~-~~~~~~~~~~~v~i~d~~~~~---~~~~~~-----~~~------~~~~~~i~~~~~~~~~~~l~~~ 236 (432)
++|+ |++.+ +++++. ++.+++||+.... ...++. .+. ..|...|.+++|+|++ .++++
T Consensus 127 ~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~ 203 (397)
T 1sq9_A 127 LKWGASNDRLLSHRLVATDV--KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATG 203 (397)
T ss_dssp EEEECCC----CEEEEEEET--TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEE
T ss_pred EEEeeccCCCCceEEEEEeC--CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEE
Confidence 9999 99999 999888 9999999998400 023332 441 3478899999999999 99999
Q ss_pred -cCCeEEEEeCCCCCceeeEeecCCCCcCC---C---CcceEEEEEcCCCCcEEEEEeCC---CeEEEEEcccccccccc
Q 014005 237 -DDLRINLWNLEISDQCFNIVDMKPSNMDD---L---TEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHS 306 (432)
Q Consensus 237 -~d~~i~lwd~~~~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~ 306 (432)
.|+.|++||++ ..+.+..+ .. | ...|.+++|+|++ ++|++++.| |.|++||+++++.
T Consensus 204 ~~dg~i~i~d~~-~~~~~~~~-------~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~---- 270 (397)
T 1sq9_A 204 FNNGTVQISELS-TLRPLYNF-------ESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGER---- 270 (397)
T ss_dssp CTTSEEEEEETT-TTEEEEEE-------ECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCE----
T ss_pred eCCCcEEEEECC-CCceeEEE-------eccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCcc----
Confidence 99999999999 56666665 55 7 8899999999998 999999999 9999999998775
Q ss_pred ceeecccccccCC-ccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec---CcceeEe------ecceeee----eh
Q 014005 307 ARILRDAAESHGS-KSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY---EPVMTLS------FCGIYVW----IL 371 (432)
Q Consensus 307 ~~~~~~h~~~~~~-~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~~~------~~~~~~~----~~ 371 (432)
+..+... ..+.. ......|...|.+++|+|++++|++++ ++.|++||+ +++..+. .|..... ..
T Consensus 271 ~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 349 (397)
T 1sq9_A 271 IGSLSVP-THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 349 (397)
T ss_dssp EEEECBC---------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred cceeccC-cccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccc
Confidence 5667660 00000 000000178999999999999999985 499999999 5666666 3300000 00
Q ss_pred hhhhcccccccccceee----------EEEEeecccceeeeecc
Q 014005 372 RQLQHSRFMSIYALSCV----------IYIITTLYLINLSALSA 405 (432)
Q Consensus 372 ~~~~~~~~~~~~~~~~~----------~~~~~g~~~~~i~~~~~ 405 (432)
..+....+..+...... .++++|+.||.|.+|+.
T Consensus 350 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 350 DSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp CBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred ccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 00001222222222222 36899999999999984
No 43
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.5e-34 Score=280.40 Aligned_cols=276 Identities=18% Similarity=0.241 Sum_probs=230.9
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
...|...|++++|+|+|++|++++.|+.|++|+.+.. ....+.+|.
T Consensus 258 ~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~----------------------------~~~~~~~h~------ 303 (577)
T 2ymu_A 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ----------------------------LLQTLTGHS------ 303 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC----------------------------EEEEECCCS------
T ss_pred EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc----------------------------EEEEEecCC------
Confidence 3468899999999999999999999999999996542 335788898
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
..|.+++| +|+++++++++.|+.|++||+.......+ ..+. ..+.+++|+|++.++++
T Consensus 304 ------~~v~~~~~--~~~~~~l~t~~~d~~i~~w~~~~~~~~~~---~~~~-----------~~v~~~~~s~~g~~l~~ 361 (577)
T 2ymu_A 304 ------SSVWGVAF--SPDGQTIASASDDKTVKLWNRNGQHLQTL---TGHS-----------SSVWGVAFSPDGQTIAS 361 (577)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCEEEEE---CCCS-----------SCEEEEEECTTSSEEEE
T ss_pred ------CCeEEEEE--CCCCCEEEEEeCCCeEEEEeCCCCeeEEE---eCCC-----------CCEEEEEECCCCCEEEE
Confidence 99999999 89999999999999999999877654443 3333 67889999999999999
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
+.. ++.+++|+. ..+.+..+ .+|...|.+++|+|++++|+++ .|+.|++||.. ++.+..+ .+|
T Consensus 362 ~~~--dg~v~~~~~----~~~~~~~~-~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--~~~~~~~-------~~~ 425 (577)
T 2ymu_A 362 ASD--DKTVKLWNR----NGQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTL-------TGH 425 (577)
T ss_dssp EET--TSEEEEEET----TCCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--CCEEEEE-------ECC
T ss_pred EeC--CCEEEEEcC----CCCEEEEe-cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEEe-------cCC
Confidence 988 999999996 44566777 7899999999999999999999 99999999976 5566655 789
Q ss_pred CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~ 346 (432)
...|++++|+|++ ++|++++.|+.|++||+. ++. +..+.+| ...|.+++|+|||++|++++
T Consensus 426 ~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~-~~~----~~~~~~~-------------~~~v~~~~~spd~~~las~~ 486 (577)
T 2ymu_A 426 SSSVWGVAFSPDD-QTIASASDDKTVKLWNRN-GQL----LQTLTGH-------------SSSVRGVAFSPDGQTIASAS 486 (577)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTSEEEEEETT-SCE----EEEEECC-------------SSCEEEEEECTTSCEEEEEE
T ss_pred CCCeEEEEECCCC-CEEEEEcCCCEEEEEECC-CCE----EEEEcCC-------------CCCEEEEEEcCCCCEEEEEe
Confidence 9999999999999 999999999999999975 443 5777786 78999999999999999975
Q ss_pred C-CeEEEEec--CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 347 Y-MNLKVFRY--EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 347 ~-~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
. +.|++||. ++++.+..|.. .+..+.......++++|+.|+.|++|+.
T Consensus 487 ~d~~i~iw~~~~~~~~~~~~h~~-----------~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 487 DDKTVKLWNRNGQLLQTLTGHSS-----------SVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp TTSEEEEEETTSCEEEEEECCSS-----------CEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CCCEEEEEcCCCCEEEEEeCCCC-----------CEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 4 99999999 77777777654 2222222222235889999999999994
No 44
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-34 Score=272.98 Aligned_cols=278 Identities=13% Similarity=0.144 Sum_probs=206.9
Q ss_pred ccCCCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 29 ~~h~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
..|.+.|++++|+| +|++||+|+.||+|+|||+.+..... ..+....+ +|.
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~---------------------~~~~~~~~-~h~------ 111 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE---------------------VYSSSLTY-DCS------ 111 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC---------------------CCSCSEEE-ECS------
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc---------------------ccceeeec-cCC------
Confidence 35789999999999 99999999999999999987621100 01111222 477
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEcc---CcceeeeeecCCCCccccccccc--ccccccccc--CCC
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR---DQKVKKIKEMDHFPFVSSENTLL--AEKNFMNEH--NPP 180 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~--~~~ 180 (432)
..|.+++| +|++++|++++.||.|++||+. .++........ .+..+.... ....+.++. +++
T Consensus 112 ------~~v~~~~~--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~ 180 (437)
T 3gre_A 112 ------STVTQITM--IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE---CIRKINLKNFGKNEYAVRMRAFVNE 180 (437)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE---EEEEEEGGGGSSCCCEEEEEEEECS
T ss_pred ------CCEEEEEE--eCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc---eeEEEEccCcccccCceEEEEEEcC
Confidence 89999999 8999999999999999999995 44322221110 000000011 234555555 568
Q ss_pred CCcceecceeeccceEEEEeecccccceeeEEeecC--CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEee
Q 014005 181 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHA--HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD 257 (432)
Q Consensus 181 ~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~ 257 (432)
++.++++++. ++.|++||++ ..+++..+ .. |...|.+++|+|+++++++| .||.|++||++ .+..+..+.
T Consensus 181 ~~~~l~~~~~--d~~i~iwd~~---~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~ 253 (437)
T 3gre_A 181 EKSLLVALTN--LSRVIIFDIR---TLERLQII-ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR-FNVLIRSWS 253 (437)
T ss_dssp SCEEEEEEET--TSEEEEEETT---TCCEEEEE-ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT-TTEEEEEEB
T ss_pred CCCEEEEEeC--CCeEEEEeCC---CCeeeEEE-ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC-CccEEEEEe
Confidence 8999999988 9999999998 67788887 55 88999999999999999999 99999999999 577776551
Q ss_pred cCCCCcCCCCcceEEEEEcC----CCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCc-----------cc
Q 014005 258 MKPSNMDDLTEVITSAEFHP----IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK-----------SF 322 (432)
Q Consensus 258 ~~~~~~~~~~~~v~~~~~~p----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~-----------~~ 322 (432)
..|...|++++|+| ++ .+|++|+.||.|++||+++++. +..+.+|...+... ..
T Consensus 254 ------~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (437)
T 3gre_A 254 ------FGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHC----QYAFINSDEQPSMEHFLPIEKGLEELN 322 (437)
T ss_dssp ------CTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEE----EEEEESSSSCCCGGGGSCBCSSGGGCC
T ss_pred ------cCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcE----EEEEEcCCCCCccceecccccccccce
Confidence 26777899996665 56 7999999999999999998875 56676653211111 01
Q ss_pred eee--eecceeEEEEcCCCCEEEEee-CCeEEEEec---CcceeEeec
Q 014005 323 FTE--IIASISDIKFANDGQHLLSRD-YMNLKVFRY---EPVMTLSFC 364 (432)
Q Consensus 323 ~~~--~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~~~~~ 364 (432)
+.+ |...|.+++|+ ++++|++|+ |+.|++||+ +.+..+..|
T Consensus 323 ~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 369 (437)
T 3gre_A 323 FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISP 369 (437)
T ss_dssp CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecc
Confidence 222 67889999999 788999975 599999999 555666543
No 45
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-35 Score=273.74 Aligned_cols=269 Identities=13% Similarity=0.106 Sum_probs=216.6
Q ss_pred hccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccc
Q 014005 7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST 86 (432)
Q Consensus 7 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (432)
.+.....|++...-. ......+.|...|++++|+|++++|++|+.||.|++|++.....
T Consensus 43 ~d~~v~iw~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-------------------- 101 (416)
T 2pm9_A 43 TDSSLELWSLLAADS-EKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-------------------- 101 (416)
T ss_dssp CCCCCEEEESSSGGG-CSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS--------------------
T ss_pred CCCeEEEEEccCCCC-CcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc--------------------
Confidence 344566777663211 12344567899999999999999999999999999999987321
Q ss_pred ccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcc------ee-eeeecCCC
Q 014005 87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQK------VK-KIKEMDHF 158 (432)
Q Consensus 87 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~------~~-~~~~~~~~ 158 (432)
.......+.+|. ..|.+++| +|+ +++|++++.|+.|++||+.+++ .. .......+
T Consensus 102 ---~~~~~~~~~~h~------------~~v~~~~~--~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2pm9_A 102 ---AINSMARFSNHS------------SSVKTVKF--NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS 164 (416)
T ss_dssp ---CCCEEEECCCSS------------SCCCEEEE--CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred ---cccchhhccCCc------------cceEEEEE--cCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence 012446788898 99999999 887 8899999999999999998765 11 11122233
Q ss_pred CccccccccccccccccccCCCC-CcceecceeeccceEEEEeecccccceeeEEeecCC------CCCeeEEEeCCCC-
Q 014005 159 PFVSSENTLLAEKNFMNEHNPPS-FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAH------DFNINSISNNSDC- 230 (432)
Q Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~- 230 (432)
. ..+.+++|+|+ +..+++++. ++.+++||++ ..+++..+ ..+ ...|.+++|+|++
T Consensus 165 ~-----------~~v~~~~~~~~~~~~l~~~~~--dg~v~iwd~~---~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 227 (416)
T 2pm9_A 165 V-----------DEVISLAWNQSLAHVFASAGS--SNFASIWDLK---AKKEVIHL-SYTSPNSGIKQQLSVVEWHPKNS 227 (416)
T ss_dssp S-----------CCCCEEEECSSCTTEEEEESS--SSCEEEEETT---TTEEEEEE-CCCCCSSCCCCCEEEEEECSSCT
T ss_pred C-----------CCeeEEEeCCCCCcEEEEEcC--CCCEEEEECC---CCCcceEE-eccccccccCCceEEEEECCCCC
Confidence 3 78999999999 778888888 9999999998 66777777 444 7889999999997
Q ss_pred CEEEEE-cCC---eEEEEeCCCCCceeeEeecCCCCcC-CCCcceEEEEEcC-CCCcEEEEEeCCCeEEEEEcccccccc
Q 014005 231 ETFVSA-DDL---RINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCD 304 (432)
Q Consensus 231 ~~l~~~-~d~---~i~lwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~ 304 (432)
.+++++ .|+ .|++||++........+ . +|...|++++|+| ++ ++|++++.||.|++||+++++.
T Consensus 228 ~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~~~~-- 297 (416)
T 2pm9_A 228 TRVATATGSDNDPSILIWDLRNANTPLQTL-------NQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPESAEQ-- 297 (416)
T ss_dssp TEEEEEECCSSSCCCCEEETTSTTSCSBCC-------CSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSSCCE--
T ss_pred CEEEEEECCCCCceEEEEeCCCCCCCcEEe-------ecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCCCcc--
Confidence 578888 888 99999999433444433 6 8999999999999 77 9999999999999999998876
Q ss_pred ccceeecccccccCCccceeeeecceeEEEEcCCC-CEEEEee-CCeEEEEec
Q 014005 305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 305 ~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~s~~-~~~i~iwd~ 355 (432)
+..+..| ...|.+++|+|++ ++|++++ |+.|++||+
T Consensus 298 --~~~~~~~-------------~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 298 --LSQFPAR-------------GNWCFKTKFAPEAPDLFACASFDNKIEVQTL 335 (416)
T ss_dssp --EEEEECS-------------SSCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred --ceeecCC-------------CCceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence 6778886 7899999999999 8999975 599999999
No 46
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.2e-33 Score=253.06 Aligned_cols=261 Identities=11% Similarity=0.196 Sum_probs=212.3
Q ss_pred hccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccc
Q 014005 7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST 86 (432)
Q Consensus 7 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (432)
.+.....|.+.. .+.......|...|.+++|+|++++|++|+.|+.|++||+++++
T Consensus 43 ~dg~i~iw~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--------------------- 98 (312)
T 4ery_A 43 ADKLIKIWGAYD---GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--------------------- 98 (312)
T ss_dssp TTSCEEEEETTT---CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---------------------
T ss_pred CCCeEEEEeCCC---cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc---------------------
Confidence 344455665532 11122334688999999999999999999999999999998765
Q ss_pred ccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccc
Q 014005 87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 166 (432)
Q Consensus 87 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 166 (432)
++..+.+|. ..|.+++| +|++++|++++.|+.|++||+.+++.. ..+..+.
T Consensus 99 ------~~~~~~~~~------------~~v~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~------- 149 (312)
T 4ery_A 99 ------CLKTLKGHS------------NYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS------- 149 (312)
T ss_dssp ------EEEEEECCS------------SCEEEEEE--CSSSSEEEEEETTSCEEEEETTTCCEE--EEECCCS-------
T ss_pred ------EEEEEcCCC------------CCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCEEE--EEecCCC-------
Confidence 346788998 99999999 899999999999999999999887633 2333444
Q ss_pred cccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEe
Q 014005 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN 245 (432)
Q Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd 245 (432)
..+.+++|++++.++++++. ++.+++||++ ..+++..+...+...+..++|+|++++++++ .|+.|++||
T Consensus 150 ----~~v~~~~~~~~~~~l~~~~~--d~~i~~wd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 220 (312)
T 4ery_A 150 ----DPVSAVHFNRDGSLIVSSSY--DGLCRIWDTA---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220 (312)
T ss_dssp ----SCEEEEEECTTSSEEEEEET--TSCEEEEETT---TCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred ----CcEEEEEEcCCCCEEEEEeC--CCcEEEEECC---CCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 67999999999999999988 9999999998 5666666645677789999999999999999 999999999
Q ss_pred CCCCCceeeEeecCCCCcCCCCcce--EEEEEc-CCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccc
Q 014005 246 LEISDQCFNIVDMKPSNMDDLTEVI--TSAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (432)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~-p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~ 322 (432)
++ .++.+..+ .+|...+ ....++ +++ .+|++|+.||.|++||+++++. +..+.+|
T Consensus 221 ~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~----~~~~~~h--------- 278 (312)
T 4ery_A 221 YS-KGKCLKTY-------TGHKNEKYCIFANFSVTGG-KWIVSGSEDNLVYIWNLQTKEI----VQKLQGH--------- 278 (312)
T ss_dssp TT-TTEEEEEE-------CSSCCSSSCCCEEEECSSS-CEEEECCTTSCEEEEETTTCCE----EEEECCC---------
T ss_pred CC-CCcEEEEE-------EecCCceEEEEEEEEeCCC-cEEEEECCCCEEEEEECCCchh----hhhhhcc---------
Confidence 99 66666665 4554432 223444 555 8999999999999999998876 6888887
Q ss_pred eeeeecceeEEEEcCCCCEEEEee---CCeEEEEec
Q 014005 323 FTEIIASISDIKFANDGQHLLSRD---YMNLKVFRY 355 (432)
Q Consensus 323 ~~~~~~~v~~~~~s~dg~~l~s~~---~~~i~iwd~ 355 (432)
...|.+++|+|++++|++++ |++|++|+.
T Consensus 279 ----~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 279 ----TDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp ----SSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred ----CCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 78999999999999999864 699999986
No 47
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.4e-33 Score=257.68 Aligned_cols=258 Identities=15% Similarity=0.180 Sum_probs=202.9
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..|.+.|++++|+|+|++||+|+.||.|++||+.++.. ..+....+.+|.
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----------------------~~~~~~~~~~~~------- 57 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-----------------------NWELSDSWRAHD------- 57 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-----------------------CEEEEEEEECCS-------
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-----------------------cceecceeccCC-------
Confidence 46899999999999999999999999999999987542 124556788999
Q ss_pred hhhhhcceeEEEEEEcC--CCCEEEEEeCCCeEEEEEccCcce-------eeeeecCCCCccccccccccccccccccCC
Q 014005 109 SLEIEEKINRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQKV-------KKIKEMDHFPFVSSENTLLAEKNFMNEHNP 179 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 179 (432)
..|.+++| +| ++++|++++.||.|++||+..++. .....+..+. ..+.+++|+
T Consensus 58 -----~~v~~~~~--~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~ 119 (351)
T 3f3f_A 58 -----SSIVAIDW--ASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK-----------GSLYSVKFA 119 (351)
T ss_dssp -----SCEEEEEE--CCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS-----------SCEEEEEEC
T ss_pred -----CcEEEEEE--cCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccC-----------CceeEEEEc
Confidence 99999999 66 699999999999999999987632 3344444455 789999999
Q ss_pred CC--CcceecceeeccceEEEEeecccccceeeE------E---eecCCCCCeeEEEeCCC---CCEEEEE-cCCeEEEE
Q 014005 180 PS--FAHGYHLEWTENMATKIANVGNSVHARCQK------V---YPHAHDFNINSISNNSD---CETFVSA-DDLRINLW 244 (432)
Q Consensus 180 ~~--~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~------~---~~~~~~~~i~~~~~~~~---~~~l~~~-~d~~i~lw 244 (432)
|+ +.++++++. ++.+++||++......... . ....|...+.+++|+|+ +..++++ .|+.+.+|
T Consensus 120 ~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 197 (351)
T 3f3f_A 120 PAHLGLKLACLGN--DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQ 197 (351)
T ss_dssp CGGGCSEEEEEET--TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEE
T ss_pred CCCCCcEEEEecC--CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEE
Confidence 99 999999988 9999999987432111111 0 01267889999999997 8899999 89999777
Q ss_pred eCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCC---cEEEEEeCCCeEEEEEcccccccc-----------------
Q 014005 245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC---NLLAYSSSRGFVRLVDMRQSALCD----------------- 304 (432)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~~~~~dg~i~iwd~~~~~~~~----------------- 304 (432)
+.. .+...... .+.+|...|++++|+|++. ++|++|+.||.|++||++.+....
T Consensus 198 ~~~-~~~~~~~~-----~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (351)
T 3f3f_A 198 RGK-DGKLHVAA-----KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSAD 271 (351)
T ss_dssp ECT-TSCEEEEE-----ECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------
T ss_pred ccC-CCceeeee-----ecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcc
Confidence 777 44432111 2378999999999999963 689999999999999998753110
Q ss_pred -------------------------ccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005 305 -------------------------HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 305 -------------------------~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~ 355 (432)
..+..+.+ |...|++++|+|+|++|++|+ ||.|++||+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 335 (351)
T 3f3f_A 272 VDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD-------------HNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 335 (351)
T ss_dssp -------------------CCSEEEEEEEEECT-------------TSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred cccccccccccccceeeeecccccccEEEEEec-------------ccccEEEEEEcCCCCEEEEecCCCcEEEEec
Confidence 01233344 478999999999999999975 599999999
No 48
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=261.39 Aligned_cols=256 Identities=14% Similarity=0.220 Sum_probs=206.7
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
-.|.+.|++++|+|+|++||+|+.||.|+||++.... .+....+.+|.
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-------------------------~~~~~~~~~h~------- 55 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHE------- 55 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-------------------------EEEEEEECCCS-------
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-------------------------ceeeeEecCCC-------
Confidence 4689999999999999999999999999999998542 23456788999
Q ss_pred hhhhhcceeEEEEEEcCC--CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC--Ccc
Q 014005 109 SLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS--FAH 184 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~ 184 (432)
..|.+++| +++ +++|++++.||.|++||+.+++.........+. ..+.+++|+|+ +.+
T Consensus 56 -----~~v~~~~~--~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~ 117 (379)
T 3jrp_A 56 -----GPVWRVDW--AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS-----------ASVNSVQWAPHEYGPL 117 (379)
T ss_dssp -----SCEEEEEE--CCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-----------SCEEEEEECCGGGCSE
T ss_pred -----CcEEEEEe--CCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCC-----------cceEEEEeCCCCCCCE
Confidence 99999999 655 899999999999999999988755555555555 78999999999 899
Q ss_pred eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-------------CCCEEEEE-cCCeEEEEeCCCCC
Q 014005 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-------------DCETFVSA-DDLRINLWNLEISD 250 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~-~d~~i~lwd~~~~~ 250 (432)
+++++. ++.+++||++.... .....+ ..|...|.+++|+| ++..++++ .|+.|++||++...
T Consensus 118 l~~~~~--d~~i~v~d~~~~~~-~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 193 (379)
T 3jrp_A 118 LLVASS--DGKVSVVEFKENGT-TSPIII-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 193 (379)
T ss_dssp EEEEET--TSEEEEEECCTTSC-CCEEEE-ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT
T ss_pred EEEecC--CCcEEEEecCCCCc-eeeEEe-cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC
Confidence 999988 99999999985422 233344 68999999999999 68999999 99999999998433
Q ss_pred ceeeEeecCCCCcCCCCcceEEEEEcCC---CCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeee
Q 014005 251 QCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (432)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 327 (432)
...... ..+.+|...|++++|+|+ + ++|++++.||.|++||++++..... ...+.. ..+.
T Consensus 194 ~~~~~~----~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~-----------~~~~ 256 (379)
T 3jrp_A 194 QTYVLE----STLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGPWK-KTLLKE-----------EKFP 256 (379)
T ss_dssp TEEEEE----EEECCCSSCEEEEEECCCCSSS-EEEEEEETTSCEEEEEESSTTSCCE-EEESSS-----------SCCS
T ss_pred cceeeE----EEEecccCcEeEEEECCCCCCC-CeEEEEeCCCEEEEEeCCCCCccce-eeeecc-----------ccCC
Confidence 221111 123789999999999999 7 9999999999999999998642100 111111 0126
Q ss_pred cceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005 328 ASISDIKFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 328 ~~v~~~~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
..|.+++|+|+|++|+++ .+|.|++||+
T Consensus 257 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 257 DVLWRASWSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp SCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence 789999999999999997 4599999999
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-34 Score=270.02 Aligned_cols=297 Identities=11% Similarity=0.146 Sum_probs=225.5
Q ss_pred cccCCCcEEEEEEcCCCC-EEEEe----------cccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeee
Q 014005 28 ELQDVDIVSAIEFDKTGD-YLAVG----------DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE 96 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~-~l~t~----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 96 (432)
.+.+...|.+++|+|+|+ +|++| +.|+.|+|||+.++... +....
T Consensus 8 ~l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~------------------------~~~~~ 63 (416)
T 2pm9_A 8 KLAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE------------------------KPIAS 63 (416)
T ss_dssp --CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC------------------------SCSCC
T ss_pred hHhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC------------------------cEEEE
Confidence 345556899999999997 99999 88999999999876421 01122
Q ss_pred eecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCCCccccccccccccccc
Q 014005 97 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFM 174 (432)
Q Consensus 97 ~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~ 174 (432)
..|. ..|.+++| +|++++|++++.||.|++||+.... ......+..|. ..|.
T Consensus 64 -~~~~------------~~v~~~~~--s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~-----------~~v~ 117 (416)
T 2pm9_A 64 -LQVD------------SKFNDLDW--SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHS-----------SSVK 117 (416)
T ss_dssp -CCCS------------SCEEEEEE--CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSS-----------SCCC
T ss_pred -EecC------------CceEEEEE--CCCCCeEEEEccCCeEEEeecccccccccchhhccCCc-----------cceE
Confidence 2466 89999999 8999999999999999999998721 12344444455 7899
Q ss_pred cccCCCC-CcceecceeeccceEEEEeecccc------cceeeEEeecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEe
Q 014005 175 NEHNPPS-FAHGYHLEWTENMATKIANVGNSV------HARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWN 245 (432)
Q Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~v~i~d~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd 245 (432)
+++|+|+ +.++++++. ++.|++||+.... .......+ ..|...|.+++|+|+ +.+++++ .|+.|++||
T Consensus 118 ~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 194 (416)
T 2pm9_A 118 TVKFNAKQDNVLASGGN--NGEIFIWDMNKCTESPSNYTPLTPGQS-MSSVDEVISLAWNQSLAHVFASAGSSNFASIWD 194 (416)
T ss_dssp EEEECSSSTTBEEEECS--SSCEEBCBTTTTSSCTTTCCCBCCCCS-CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEE
T ss_pred EEEEcCCCCCEEEEEcC--CCeEEEEECCCCccccccccccccccc-cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEE
Confidence 9999998 889999988 9999999998542 11112222 578899999999999 7889999 999999999
Q ss_pred CCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC---eEEEEEccccccccccceeec-ccccccCCcc
Q 014005 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILR-DAAESHGSKS 321 (432)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~-~h~~~~~~~~ 321 (432)
++ .++....+... ....+|...|++++|+|++..+|++++.|+ .|++||++++... ...+. +|
T Consensus 195 ~~-~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~~~~~~-------- 261 (416)
T 2pm9_A 195 LK-AKKEVIHLSYT-SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP---LQTLNQGH-------- 261 (416)
T ss_dssp TT-TTEEEEEECCC-CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBCCCSCC--------
T ss_pred CC-CCCcceEEecc-ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEEeecCc--------
Confidence 99 56666655211 011234788999999999757999999998 9999999986432 46666 66
Q ss_pred ceeeeecceeEEEEcC-CCCEEEEee-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceee-EEEEeec
Q 014005 322 FFTEIIASISDIKFAN-DGQHLLSRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCV-IYIITTL 395 (432)
Q Consensus 322 ~~~~~~~~v~~~~~s~-dg~~l~s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~ 395 (432)
...|.+++|+| ++++|++++ |+.|++||+ +++..+..|.. .+..+...... ..+++++
T Consensus 262 -----~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~~l~s~~ 325 (416)
T 2pm9_A 262 -----QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN-----------WCFKTKFAPEAPDLFACAS 325 (416)
T ss_dssp -----SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS-----------CCCCEEECTTCTTEEEECC
T ss_pred -----cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC-----------ceEEEEECCCCCCEEEEEe
Confidence 78999999999 899999975 599999999 56666766653 12222222222 4689999
Q ss_pred ccceeeeeccC
Q 014005 396 YLINLSALSAG 406 (432)
Q Consensus 396 ~~~~i~~~~~~ 406 (432)
.|+.|.+|+..
T Consensus 326 ~d~~i~iw~~~ 336 (416)
T 2pm9_A 326 FDNKIEVQTLQ 336 (416)
T ss_dssp SSSEEEEEESC
T ss_pred cCCcEEEEEcc
Confidence 99999999943
No 50
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=264.26 Aligned_cols=290 Identities=16% Similarity=0.132 Sum_probs=221.1
Q ss_pred CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
|.+.|++++|+|+|++|++|+.||.|++||. +++ ....+.+|.
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~---------------------------~~~~~~~~~--------- 149 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGA---------------------------LLNVLNFHR--------- 149 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSC---------------------------EEEEECCCC---------
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCC---------------------------eeeeccCCC---------
Confidence 6779999999999999999999999999993 322 346788898
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCc--cccccccccccccccccCCCCCcceecc
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF--VSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..|.+++| +|++++|++++.|+.|++||+.+++............ ............+.++.|++++. ++.+
T Consensus 150 ---~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 223 (425)
T 1r5m_A 150 ---APIVSVKW--NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIP 223 (425)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTE-EEEE
T ss_pred ---ccEEEEEE--CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEE
Confidence 99999999 8999999999999999999998877443322211100 00000000111288888988765 5555
Q ss_pred eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
+. ++.+++||+. ..+....+ ..|...|.+++|+|++++++++ .|+.|++||++ .+.....+ ..|.
T Consensus 224 ~~--~g~i~~~d~~---~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~-------~~~~ 289 (425)
T 1r5m_A 224 GP--KGAIFVYQIT---EKTPTGKL-IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG-NGNSQNCF-------YGHS 289 (425)
T ss_dssp CG--GGCEEEEETT---CSSCSEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS-SBSCSEEE-------CCCS
T ss_pred cC--CCeEEEEEcC---CCceeeee-ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC-CCccceEe-------cCCC
Confidence 55 8999999998 55677777 7899999999999999999999 99999999999 56666655 7788
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~ 347 (432)
..|.+++|+|++ ++++++.||.|++||+++++. +..+..| ...|.+++|+|+|++|++++.
T Consensus 290 ~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~----~~~~~~~-------------~~~i~~~~~s~~~~~l~~~~~ 350 (425)
T 1r5m_A 290 QSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTL----LALSIVD-------------GVPIFAGRISQDGQKYAVAFM 350 (425)
T ss_dssp SCEEEEEEETTT--EEEEEETTSEEEEEETTTTEE----EEEEECT-------------TCCEEEEEECTTSSEEEEEET
T ss_pred ccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcE----eEecccC-------------CccEEEEEEcCCCCEEEEEEC
Confidence 999999999987 889999999999999998776 5777776 679999999999999999854
Q ss_pred -CeEEEEec---C--------------------cceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeee
Q 014005 348 -MNLKVFRY---E--------------------PVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSAL 403 (432)
Q Consensus 348 -~~i~iwd~---~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~ 403 (432)
+.|++||+ . ++..+..|.. ...+..+.......++++|+.||.|.+|
T Consensus 351 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~~~dg~i~iw 421 (425)
T 1r5m_A 351 DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD---------NDYIFDLSWNCAGNKISVAYSLQEGSVV 421 (425)
T ss_dssp TSCEEEEECHHHHC--------------CEECCEEEEECCTTC---------CCCEEEEEECTTSSEEEEEESSSCCEEE
T ss_pred CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCccc---------CCceEEEEccCCCceEEEEecCceEEEE
Confidence 99999999 3 3444444321 0022222222222268899999999999
Q ss_pred cc
Q 014005 404 SA 405 (432)
Q Consensus 404 ~~ 405 (432)
+.
T Consensus 422 ~~ 423 (425)
T 1r5m_A 422 AI 423 (425)
T ss_dssp EC
T ss_pred ee
Confidence 83
No 51
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.8e-34 Score=268.29 Aligned_cols=276 Identities=14% Similarity=0.100 Sum_probs=215.3
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
.+++++|+|+|++|++|+.||.|++||+.+.+.. ..+..|
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~---------------------------~~~~~~------------- 97 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS---------------------------KMLKRA------------- 97 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETT---------------------------TTSCSC-------------
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEeccccee---------------------------eEEecC-------------
Confidence 4557999999999999999999999999876532 222233
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
..+....| ++++++|++++.||.|++||+.+++... .+..|. +.|.+++|+|++.++++++. |
T Consensus 98 ~~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~h~-----------~~v~~~~~~~~~~~l~s~s~--d 160 (420)
T 3vl1_A 98 DYTAVDTA--KLQMRRFILGTTEGDIKVLDSNFNLQRE--IDQAHV-----------SEITKLKFFPSGEALISSSQ--D 160 (420)
T ss_dssp CEEEEEEE--CSSSCEEEEEETTSCEEEECTTSCEEEE--ETTSSS-----------SCEEEEEECTTSSEEEEEET--T
T ss_pred CceEEEEE--ecCCCEEEEEECCCCEEEEeCCCcceee--eccccc-----------CccEEEEECCCCCEEEEEeC--C
Confidence 23334456 8999999999999999999998876433 334455 78999999999999999998 9
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC-----
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT----- 267 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~----- 267 (432)
+.|++||+. ..+++..+ .+|...|.+++|+|++++|+++ .|+.|++||++ .++....+... ..+.
T Consensus 161 ~~i~iwd~~---~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~----~~~~~~v~~ 231 (420)
T 3vl1_A 161 MQLKIWSVK---DGSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG-TGTTIHTFNRK----ENPHDGVNS 231 (420)
T ss_dssp SEEEEEETT---TCCCCEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT-TTEEEEEECBT----TBTTCCEEE
T ss_pred CeEEEEeCC---CCcCceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC-CCceeEEeecC----CCCCCCccE
Confidence 999999998 66777778 7899999999999999999999 99999999999 66776665211 1233
Q ss_pred ----------------cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceee-cccccccCCccceeeeecce
Q 014005 268 ----------------EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIASI 330 (432)
Q Consensus 268 ----------------~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~~v 330 (432)
..+.+++|+|++ ++|++|+.||.|++||+++++. ...+ ..| ...|
T Consensus 232 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~-------------~~~v 293 (420)
T 3vl1_A 232 IALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQ----TIQLPSKF-------------TCSC 293 (420)
T ss_dssp EEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCE----EEEECCTT-------------SSCE
T ss_pred EEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCce----eEEccccc-------------CCCc
Confidence 344455567888 9999999999999999998775 2333 344 6789
Q ss_pred eEEEEcCCCC-EEEEeeC-CeEEEEec----CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 331 SDIKFANDGQ-HLLSRDY-MNLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 331 ~~~~~s~dg~-~l~s~~~-~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
.+++|+|+++ +|++|+. |.|++||+ .++..+..+.. ..+..++..+ ..++++|+.|+.+.+|+
T Consensus 294 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~----------~~v~~~~~~~-~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 294 NSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG----------TPINNVYFAA-GALFVSSGFDTSIKLDI 362 (420)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT----------SCEEEEEEET-TEEEEEETTTEEEEEEE
T ss_pred eeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC----------CCceEEEeCC-CCEEEEecCCccEEEEe
Confidence 9999999998 8998755 99999999 34666666431 1222222222 23689999999999999
No 52
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-33 Score=248.85 Aligned_cols=273 Identities=15% Similarity=0.145 Sum_probs=216.9
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..|.+.|++++| |++++|++|+.||.|++||+.+++ ....+..|.
T Consensus 15 ~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~---------------------------~~~~~~~~~------- 59 (313)
T 3odt_A 15 KGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW---------------------------LGTVVYTGQ------- 59 (313)
T ss_dssp CCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE---------------------------EEEEEEECS-------
T ss_pred hCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE---------------------------EEEEeecCC-------
Confidence 468999999999 999999999999999999997764 336677888
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
..|.+++| +|+++++++++.|+.|++|++.... ......+..+. ..+.++.| ++.++++
T Consensus 60 -----~~v~~~~~--~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~-----------~~i~~~~~--~~~~l~~ 119 (313)
T 3odt_A 60 -----GFLNSVCY--DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQ-----------GNVCSLSF--QDGVVIS 119 (313)
T ss_dssp -----SCEEEEEE--ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCS-----------SCEEEEEE--ETTEEEE
T ss_pred -----ccEEEEEE--CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcc-----------cCEEEEEe--cCCEEEE
Confidence 99999999 8899999999999999999997653 22233334444 67888888 5678888
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
++. ++.+++|| .......+ ..|...+.++++.| +++.++++ .|+.|++||.. .....+ ..
T Consensus 120 ~~~--d~~i~~~d-----~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~-------~~ 181 (313)
T 3odt_A 120 GSW--DKTAKVWK-----EGSLVYNL-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKTF-------SG 181 (313)
T ss_dssp EET--TSEEEEEE-----TTEEEEEE-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEEE-------CS
T ss_pred EeC--CCCEEEEc-----CCcEEEec-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEEE-------ec
Confidence 888 99999999 33555666 68999999999988 89999999 99999999954 344443 34
Q ss_pred -CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 266 -LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 266 -~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
|...+.+++|+|++ . +++++.||.|++||+++++. +..+..| ...|.+++|+|+|+ |++
T Consensus 182 ~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~----~~~~~~~-------------~~~i~~~~~~~~~~-l~~ 241 (313)
T 3odt_A 182 IHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDV----LRTYEGH-------------ESFVYCIKLLPNGD-IVS 241 (313)
T ss_dssp SCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCCE----EEEEECC-------------SSCEEEEEECTTSC-EEE
T ss_pred cCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchhh----hhhhhcC-------------CceEEEEEEecCCC-EEE
Confidence 88899999999998 6 89999999999999998876 6778876 78999999999995 555
Q ss_pred e-eCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005 345 R-DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG 406 (432)
Q Consensus 345 ~-~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 406 (432)
+ .++.|++||+ +++..+..|.. .+..+...... .+++|+.||.|.+|+..
T Consensus 242 ~~~dg~v~iwd~~~~~~~~~~~~~~~-----------~i~~~~~~~~~-~~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 242 CGEDRTVRIWSKENGSLKQVITLPAI-----------SIWSVDCMSNG-DIIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EETTSEEEEECTTTCCEEEEEECSSS-----------CEEEEEECTTS-CEEEEETTSCEEEEESC
T ss_pred EecCCEEEEEECCCCceeEEEeccCc-----------eEEEEEEccCC-CEEEEeCCCcEEEEeCC
Confidence 4 6699999999 56666666543 12211111111 15678899999999954
No 53
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=257.72 Aligned_cols=241 Identities=11% Similarity=0.112 Sum_probs=189.3
Q ss_pred cCCCcEEEEEEcCCCCEE-EEecc---cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 30 QDVDIVSAIEFDKTGDYL-AVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l-~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
.|.+.|++++|+|+++.+ ++|+. ||.|+|||+.+++.. . ....+|.
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~-------------------------~-~~~~~~~---- 65 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK-------------------------L-LREIEKA---- 65 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE-------------------------E-EEEEEES----
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc-------------------------c-eeeeccc----
Confidence 488999999999999654 56665 999999999886532 1 1223677
Q ss_pred ccchhhhhcceeEEEEEEcCC---CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccc------
Q 014005 106 YLKSLEIEEKINRVRWCAAPN---GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE------ 176 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------ 176 (432)
..|.+++| +|+ +.+|++++.||.|++||+.+++. ....+..+. ..|.++
T Consensus 66 --------~~v~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~-----------~~v~~~~~~~~~ 123 (357)
T 3i2n_A 66 --------KPIKCGTF--GATSLQQRYLATGDFGGNLHIWNLEAPEM-PVYSVKGHK-----------EIINAIDGIGGL 123 (357)
T ss_dssp --------SCEEEEEC--TTCCTTTCCEEEEETTSCEEEECTTSCSS-CSEEECCCS-----------SCEEEEEEESGG
T ss_pred --------CcEEEEEE--cCCCCCCceEEEecCCCeEEEEeCCCCCc-cEEEEEecc-----------cceEEEeecccc
Confidence 89999999 887 69999999999999999987751 122233343 567766
Q ss_pred cCCCCCcceecceeeccceEEEEeecccccce-eeEEeecCCC----CCeeEEE----eCCCCCEEEEE-cCCeEEEEeC
Q 014005 177 HNPPSFAHGYHLEWTENMATKIANVGNSVHAR-CQKVYPHAHD----FNINSIS----NNSDCETFVSA-DDLRINLWNL 246 (432)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~-~~~~~~~~~~----~~i~~~~----~~~~~~~l~~~-~d~~i~lwd~ 246 (432)
+|++++.++++++. ++.+++||++. .. +...+ ..|. ..+.+++ |+|++++++++ .|+.|++||+
T Consensus 124 ~~s~~~~~l~~~~~--d~~i~vwd~~~---~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (357)
T 3i2n_A 124 GIGEGAPEIVTGSR--DGTVKVWDPRQ---KDDPVANM-EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDL 197 (357)
T ss_dssp GCC-CCCEEEEEET--TSCEEEECTTS---CSSCSEEE-CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEET
T ss_pred ccCCCccEEEEEeC--CCeEEEEeCCC---CCCcceec-cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEEC
Confidence 77899999999988 99999999984 33 45555 3333 3788888 78999999999 9999999999
Q ss_pred CCCCceeeEeecCCCCcCCCCcceEEEEEcC---CCCcEEEEEeCCCeEEEEEccccccccccceeec-----ccccccC
Q 014005 247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHP---IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR-----DAAESHG 318 (432)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~h~~~~~ 318 (432)
+ ..+.... ..|...|.+++|+| ++ .+|++++.||.|++||+++++. ...+. +|
T Consensus 198 ~-~~~~~~~--------~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~----- 258 (357)
T 3i2n_A 198 R-NMALRWE--------TNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHP----TKGFASVSEKAH----- 258 (357)
T ss_dssp T-TTEEEEE--------EECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEET----TTEEEEEEEECC-----
T ss_pred c-cCceeee--------cCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCc----ccceeeeccCCC-----
Confidence 9 4544332 56778899999999 88 9999999999999999998765 33333 55
Q ss_pred CccceeeeecceeEEEEcCCCC-EEEEee-CCeEEEEec
Q 014005 319 SKSFFTEIIASISDIKFANDGQ-HLLSRD-YMNLKVFRY 355 (432)
Q Consensus 319 ~~~~~~~~~~~v~~~~~s~dg~-~l~s~~-~~~i~iwd~ 355 (432)
...|.+++|+|+++ +|++|+ +|.|++||+
T Consensus 259 --------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 289 (357)
T 3i2n_A 259 --------KSTVWQVRHLPQNRELFLTAGGAGGLHLWKY 289 (357)
T ss_dssp --------SSCEEEEEEETTEEEEEEEEETTSEEEEEEE
T ss_pred --------cCCEEEEEECCCCCcEEEEEeCCCcEEEeec
Confidence 78999999999998 788875 499999999
No 54
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3e-33 Score=255.33 Aligned_cols=294 Identities=10% Similarity=0.034 Sum_probs=219.3
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
.|.+.|++++|+|++++|++|+.||.|+||++.++.. ......+.+|.
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~------------------------~~~~~~~~~~~-------- 56 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK------------------------NVDLLQSLRYK-------- 56 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT------------------------EEEEEEEEECS--------
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc------------------------cccceeeeecC--------
Confidence 6889999999999999999999999999999987651 11224556788
Q ss_pred hhhhcceeEEEEEEcCCCC-EEEEEeCCCeEEEEEc-cCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 110 LEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
..|.+++| +|+++ +|++++.||.|++||+ .+++...+... .+. ..|.+++|++ +..+++
T Consensus 57 ----~~v~~~~~--~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~-----------~~v~~l~~~~-~~~l~s 117 (342)
T 1yfq_A 57 ----HPLLCCNF--IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNN-EAN-----------LGICRICKYG-DDKLIA 117 (342)
T ss_dssp ----SCEEEEEE--EESSSEEEEEEETTSCEEEECSSSSSSEEECBSC-CCC-----------SCEEEEEEET-TTEEEE
T ss_pred ----CceEEEEE--CCCCCcEEEEEcCCCeEEEEEeccCCceEecccc-CCC-----------CceEEEEeCC-CCEEEE
Confidence 89999999 77899 9999999999999999 87765333220 034 7899999999 999999
Q ss_pred ceeeccceEEEEeeccccc------ceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCC-CCceeeEeecC
Q 014005 188 LEWTENMATKIANVGNSVH------ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI-SDQCFNIVDMK 259 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~-~~~~~~~~~~~ 259 (432)
++. ++.+++||++.... .+++..+ .|...+.+++|+|++ ++++ .|+.|++||++. ........
T Consensus 118 ~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~--- 188 (342)
T 1yfq_A 118 ASW--DGLIEVIDPRNYGDGVIAVKNLNSNNT--KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE--- 188 (342)
T ss_dssp EET--TSEEEEECHHHHTTBCEEEEESCSSSS--SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEE---
T ss_pred EcC--CCeEEEEcccccccccccccCCeeeEE--eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceee---
Confidence 888 99999999982000 4555555 388899999999988 7777 999999999994 22222211
Q ss_pred CCCcCCCCcceEEEEEcC-CCCcEEEEEeCCCeEEEEEcccc--ccccccceeecccccccCCccceeeeecceeEEEEc
Q 014005 260 PSNMDDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQS--ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (432)
Q Consensus 260 ~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s 336 (432)
...|...+++++|+| ++ ++|++++.||.|++||++.. ....+....+..|..... ..++...|.+++|+
T Consensus 189 ---~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~s 260 (342)
T 1yfq_A 189 ---ESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK----DTNLAYPVNSIEFS 260 (342)
T ss_dssp ---ECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT----CCSSCCCEEEEEEC
T ss_pred ---ecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccc----ccccceeEEEEEEc
Confidence 256778899999999 98 99999999999999999876 111112567777511100 01123489999999
Q ss_pred CCCCEEEEeeC-CeEEEEec---CcceeEeec-ceeeeehhhhhcccccccccceeeEEEEeecccce-eeeec
Q 014005 337 NDGQHLLSRDY-MNLKVFRY---EPVMTLSFC-GIYVWILRQLQHSRFMSIYALSCVIYIITTLYLIN-LSALS 404 (432)
Q Consensus 337 ~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~ 404 (432)
|++++|++++. |.|++||+ +++..+..| .. .+..+. ....++++|+.||. ...+.
T Consensus 261 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~-----------~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 261 PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED-----------SVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp TTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS-----------EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred CCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC-----------CceEec--CCCCeEEEEecCCccccccc
Confidence 99999999854 99999999 455555554 32 222222 22336889999998 55444
No 55
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-33 Score=261.57 Aligned_cols=291 Identities=12% Similarity=0.128 Sum_probs=217.5
Q ss_pred CccccCCCcEEEEEEcCCCC-EEEEecccceEEEEEe----cCCcCCCCccccchhhhccccccccccCCcceeeee---
Q 014005 26 DEELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFET----VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF--- 97 (432)
Q Consensus 26 ~~~~~h~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--- 97 (432)
.....|.+.|++++|+|+|+ +||+|+.||.|++|++ .+++... .+. +.......+
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------~~~----------~~~~~~~~~~~~ 101 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYW-------KLT----------IIAELRHPFALS 101 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CE-------EEE----------EEEEEECCCCCC
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccc-------ccc----------cccccccccccc
Confidence 33456678999999999999 9999999999999999 6655200 000 000011111
Q ss_pred ---ecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccc
Q 014005 98 ---QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (432)
Q Consensus 98 ---~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 174 (432)
.+|. ..|.+++| +|++++|++++.||.|++||....... .+..+. ..+.
T Consensus 102 ~~~~~~~------------~~v~~~~~--s~~~~~l~~~~~dg~i~i~~~~~~~~~---~~~~~~-----------~~v~ 153 (425)
T 1r5m_A 102 ASSGKTT------------NQVTCLAW--SHDGNSIVTGVENGELRLWNKTGALLN---VLNFHR-----------APIV 153 (425)
T ss_dssp ------C------------BCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCEEE---EECCCC-----------SCEE
T ss_pred ccccCCC------------CceEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCeee---eccCCC-----------ccEE
Confidence 2245 79999999 899999999999999999994433322 233344 7899
Q ss_pred cccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCC---------------eeEEEeCCCCCEEEEE-cC
Q 014005 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFN---------------INSISNNSDCETFVSA-DD 238 (432)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~---------------i~~~~~~~~~~~l~~~-~d 238 (432)
+++|+|++.++++++. ++.+++||+. ..+.+..+ ..+... +.+++|+|++ .++++ .|
T Consensus 154 ~~~~~~~~~~l~~~~~--d~~i~iwd~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 226 (425)
T 1r5m_A 154 SVKWNKDGTHIISMDV--ENVTILWNVI---SGTVMQHF-ELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPK 226 (425)
T ss_dssp EEEECTTSSEEEEEET--TCCEEEEETT---TTEEEEEE-CCC---------------CCCBSCCEEEETT-EEEEECGG
T ss_pred EEEECCCCCEEEEEec--CCeEEEEECC---CCcEEEEe-eccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCC
Confidence 9999999999999988 9999999998 66777777 555555 9999999986 46666 99
Q ss_pred CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccC
Q 014005 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG 318 (432)
Q Consensus 239 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~ 318 (432)
+.|++||++ .+.....+ ..|...|.+++|+|++ ++|++++.||.|++||+++++. ...+..|
T Consensus 227 g~i~~~d~~-~~~~~~~~-------~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~----- 288 (425)
T 1r5m_A 227 GAIFVYQIT-EKTPTGKL-------IGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNS----QNCFYGH----- 288 (425)
T ss_dssp GCEEEEETT-CSSCSEEE-------CCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSC----SEEECCC-----
T ss_pred CeEEEEEcC-CCceeeee-------ccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCcc----ceEecCC-----
Confidence 999999999 55666555 7889999999999999 8999999999999999998775 5777776
Q ss_pred CccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEee
Q 014005 319 SKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITT 394 (432)
Q Consensus 319 ~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 394 (432)
...|.+++|+|++ +|+++ .++.|++||+ +++..+..|.. .+..+.......++++|
T Consensus 289 --------~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----------~i~~~~~s~~~~~l~~~ 348 (425)
T 1r5m_A 289 --------SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV-----------PIFAGRISQDGQKYAVA 348 (425)
T ss_dssp --------SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC-----------CEEEEEECTTSSEEEEE
T ss_pred --------CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc-----------cEEEEEEcCCCCEEEEE
Confidence 7899999999999 77776 4599999999 45555554432 22222222222368889
Q ss_pred cccceeeeeccC
Q 014005 395 LYLINLSALSAG 406 (432)
Q Consensus 395 ~~~~~i~~~~~~ 406 (432)
+.||.|.+|+..
T Consensus 349 ~~dg~i~i~~~~ 360 (425)
T 1r5m_A 349 FMDGQVNVYDLK 360 (425)
T ss_dssp ETTSCEEEEECH
T ss_pred ECCCeEEEEECC
Confidence 999999999943
No 56
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.6e-32 Score=252.69 Aligned_cols=299 Identities=7% Similarity=0.065 Sum_probs=209.3
Q ss_pred CCcEEEEEEcCCCCEEEEeccc-------ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRG-------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~ 104 (432)
.-+|+|++|+|+|++|++|+.| +.|++|+++..... ....+.. .....+.+|.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~-----~~~~~~~------------~~~~~l~~~~--- 73 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDT-----EKEQFHI------------LSEFALEDND--- 73 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSS-----HHHHEEE------------EEEEECCTTS---
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcc-----eeeeeee------------eeEEEccCCC---
Confidence 3479999999999999998643 36999999876432 0000000 0112456677
Q ss_pred cccchhhhhcceeEEEEEEcCCCCEEEEE-----------eCCCeEEEEEccCcc--eeeeeecCCCCcccccccccccc
Q 014005 105 DYLKSLEIEEKINRVRWCAAPNGSMFILS-----------TNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEK 171 (432)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~-----------~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 171 (432)
..|.++++ ++..+++| +.|+.+++|++.... ........... ....+.
T Consensus 74 ---------~~v~s~~~----~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 134 (365)
T 4h5i_A 74 ---------DSPTAIDA----SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDA------STNADD 134 (365)
T ss_dssp ---------CCCCEEEE----ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSC------CCCTTC
T ss_pred ---------CceEEEEe----CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceee------cCCccc
Confidence 77888877 34556655 457889999987543 22222111110 011124
Q ss_pred ccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCc
Q 014005 172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ 251 (432)
Q Consensus 172 ~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~ 251 (432)
.++.++|+|++++++.++...|+.|++||++ +.+++..+ .|...|.+++|+|+|++++++.++.+.+|+.. .+.
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~---~~~~~~~~--~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~-~~~ 208 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPS---DLTEKFEI--ETRGEVKDLHFSTDGKVVAYITGSSLEVISTV-TGS 208 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETT---TTEEEEEE--ECSSCCCEEEECTTSSEEEEECSSCEEEEETT-TCC
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECC---CCcEEEEe--CCCCceEEEEEccCCceEEeccceeEEEEEec-cCc
Confidence 5778999999999887665448999999998 67777776 47788999999999999999955566677666 344
Q ss_pred eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC----eEEEEEccccccccccceeecccccccCCccceeeee
Q 014005 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (432)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 327 (432)
..... ....|...|++++|+|++ +.+++++.|+ .+++||+..+.........+.+| .
T Consensus 209 ~~~~~-----~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------------~ 269 (365)
T 4h5i_A 209 CIARK-----TDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR-------------F 269 (365)
T ss_dssp EEEEE-----CCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS-------------C
T ss_pred ceeee-----ecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeeeecCC-------------C
Confidence 33221 236788899999999999 9999999887 68899988655321113445555 7
Q ss_pred cceeEEEEcCCCCEEEEeeC-CeEEEEec---CcceeE-eecceeeeehhhhhcccccccccceeeEEEEeecccceeee
Q 014005 328 ASISDIKFANDGQHLLSRDY-MNLKVFRY---EPVMTL-SFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSA 402 (432)
Q Consensus 328 ~~v~~~~~s~dg~~l~s~~~-~~i~iwd~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 402 (432)
..|++++|+|||++||+|+. ++|+|||+ +++.++ +.|.. .+..+.++....++++|+.|++|+|
T Consensus 270 ~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~-----------~V~~v~fSpdg~~laS~S~D~tvrv 338 (365)
T 4h5i_A 270 KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSF-----------AITEVTISPDSTYVASVSAANTIHI 338 (365)
T ss_dssp SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSS-----------CEEEEEECTTSCEEEEEETTSEEEE
T ss_pred CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccC-----------CEEEEEECCCCCEEEEEeCCCeEEE
Confidence 89999999999999999854 99999999 455554 44543 3333333334447999999999999
Q ss_pred ecc
Q 014005 403 LSA 405 (432)
Q Consensus 403 ~~~ 405 (432)
|+.
T Consensus 339 w~i 341 (365)
T 4h5i_A 339 IKL 341 (365)
T ss_dssp EEC
T ss_pred EEc
Confidence 993
No 57
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.7e-32 Score=253.33 Aligned_cols=274 Identities=15% Similarity=0.232 Sum_probs=204.4
Q ss_pred ccCCCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 29 ~~h~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
..|.+.|++++|+| +|++||+|+.||.|++||+++++........ .. .........+|.
T Consensus 40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-------~~-------~~~~~~~~~~~~------ 99 (408)
T 4a11_B 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK-------AV-------CSIGRDHPDVHR------ 99 (408)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC-------EE-------EEECTTCTTCCS------
T ss_pred eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc-------cc-------ccccccccccCC------
Confidence 35899999999999 9999999999999999999987643110000 00 000000113477
Q ss_pred chhhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC---CCc
Q 014005 108 KSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP---SFA 183 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~ 183 (432)
..|.+++| +| ++.+|++++.||.|++||+.+++........ ..+..+.+.+ ++.
T Consensus 100 ------~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 157 (408)
T 4a11_B 100 ------YSVETVQW--YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFE--------------ETVYSHHMSPVSTKHC 157 (408)
T ss_dssp ------SCEEEEEE--CTTCTTCEEEEETTSEEEEEETTTTEEEEEEECS--------------SCEEEEEECSSCSSCC
T ss_pred ------CcEEEEEE--ccCCCcEEEEEeCCCeEEEeeCCCCccceeccCC--------------CceeeeEeecCCCCCc
Confidence 89999999 78 7789999999999999999988755544432 4566666666 445
Q ss_pred ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecC--
Q 014005 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMK-- 259 (432)
Q Consensus 184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~-- 259 (432)
+++.+.. ++.+++||++ ...+...+ ..|...|.+++|+|+++ .++++ .|+.|++||++.....+..++..
T Consensus 158 ~~~~~~~--~~~v~~~d~~---~~~~~~~~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 231 (408)
T 4a11_B 158 LVAVGTR--GPKVQLCDLK---SGSCSHIL-QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231 (408)
T ss_dssp EEEEEES--SSSEEEEESS---SSCCCEEE-CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT
T ss_pred EEEEEcC--CCeEEEEeCC---Ccceeeee-cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc
Confidence 8888888 9999999998 66777777 78999999999999998 47788 99999999998544444443111
Q ss_pred ------CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccc-------------------
Q 014005 260 ------PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA------------------- 314 (432)
Q Consensus 260 ------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~------------------- 314 (432)
......|...|++++|+|++ ++|++++.||.|++||+++++.. ..+..+.
T Consensus 232 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (408)
T 4a11_B 232 KKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENT----LVNYGKVCNNSKKGLKFTVSCGCSSE 306 (408)
T ss_dssp CSCCCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBC----CCCCCCCCCCCSSCCCCEECCSSSSC
T ss_pred ccceeeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccc----eeccccccccccccceeEEecCCCce
Confidence 11225788999999999999 99999999999999999987642 1111100
Q ss_pred ---------------cccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005 315 ---------------ESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 315 ---------------~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~ 355 (432)
........+.+|...|.+++|+|+|++|++|+ ||.|++||+
T Consensus 307 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 363 (408)
T 4a11_B 307 FVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVP 363 (408)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred EEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeC
Confidence 00011123345688999999999999999985 599999999
No 58
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7e-32 Score=245.47 Aligned_cols=239 Identities=10% Similarity=0.114 Sum_probs=203.3
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
.|...|++++|+|++++|++++.||.|++||+++++. .....+.+|.
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-------------------------~~~~~~~~~~-------- 141 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP-------------------------RIKAELTSSA-------- 141 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---------------------------EEEEEEECSS--------
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc-------------------------ceeeecccCC--------
Confidence 6889999999999999999999999999999987642 2335677888
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
..|.+++| +|+++++++++.||.|++||+.+++... .+..+. ..+.+++|+|++.++++++
T Consensus 142 ----~~i~~~~~--~~~~~~l~~~~~dg~v~~~d~~~~~~~~--~~~~~~-----------~~i~~~~~~~~~~~l~~~~ 202 (337)
T 1gxr_A 142 ----PACYALAI--SPDSKVCFSCCSDGNIAVWDLHNQTLVR--QFQGHT-----------DGASCIDISNDGTKLWTGG 202 (337)
T ss_dssp ----SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEE--EECCCS-----------SCEEEEEECTTSSEEEEEE
T ss_pred ----CceEEEEE--CCCCCEEEEEeCCCcEEEEeCCCCceee--eeeccc-----------CceEEEEECCCCCEEEEEe
Confidence 89999999 8999999999999999999998876333 333344 7899999999999999998
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
. ++.+++||++ ..+....+ .+...+.+++|+|+++.++++ .|+.|++||++ ..... .+ ..|..
T Consensus 203 ~--dg~i~~~d~~---~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~-~~~~~-~~-------~~~~~ 266 (337)
T 1gxr_A 203 L--DNTVRSWDLR---EGRQLQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN-KPDKY-QL-------HLHES 266 (337)
T ss_dssp T--TSEEEEEETT---TTEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SSCEE-EE-------CCCSS
T ss_pred c--CCcEEEEECC---CCceEeee--cCCCceEEEEECCCCCEEEEEcCCCcEEEEECC-CCCeE-EE-------cCCcc
Confidence 8 9999999998 56666665 477889999999999999999 99999999999 44433 22 68889
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-C
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 347 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~ 347 (432)
.|.+++|+|++ ++|++++.||.|++||+++++. .... .| ...+.+++|+|++++|++++ +
T Consensus 267 ~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~----~~~~-~~-------------~~~v~~~~~s~~~~~l~~~~~d 327 (337)
T 1gxr_A 267 CVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGAS----IFQS-KE-------------SSSVLSCDISVDDKYIVTGSGD 327 (337)
T ss_dssp CEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE----EEEE-EC-------------SSCEEEEEECTTSCEEEEEETT
T ss_pred ceeEEEECCCC-CEEEEecCCCcEEEEECCCCeE----EEEe-cC-------------CCcEEEEEECCCCCEEEEecCC
Confidence 99999999999 9999999999999999998775 2222 33 57899999999999999975 4
Q ss_pred CeEEEEec
Q 014005 348 MNLKVFRY 355 (432)
Q Consensus 348 ~~i~iwd~ 355 (432)
|.|++||+
T Consensus 328 g~i~iw~~ 335 (337)
T 1gxr_A 328 KKATVYEV 335 (337)
T ss_dssp SCEEEEEE
T ss_pred CeEEEEEE
Confidence 99999996
No 59
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3e-33 Score=257.60 Aligned_cols=303 Identities=13% Similarity=0.098 Sum_probs=217.1
Q ss_pred cCCCcEEEEEEcCC----CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeec-----C
Q 014005 30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-----H 100 (432)
Q Consensus 30 ~h~~~V~~~~fsp~----g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-----h 100 (432)
.|.+.|++++|+|+ ...+++++.++.|++||+.+++.. ..+.. |
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~---------------------------~~~~~~~~~~~ 68 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI---------------------------RLLQSYVDADA 68 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE---------------------------EEEEEEECSCT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE---------------------------EeeeeccccCC
Confidence 68999999999984 445666667779999999876532 23332 4
Q ss_pred CccccccchhhhhcceeEEEEEEcCC--CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccC
Q 014005 101 EPEFDYLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN 178 (432)
Q Consensus 101 ~~~~~~~~~~~~~~~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 178 (432)
. ..|.+++|+|..+ +++|++|+.||.|++||+.+++... .+..+. ..|.+++|
T Consensus 69 ~------------~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~-----------~~i~~~~~ 123 (366)
T 3k26_A 69 D------------ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK--HYVGHG-----------NAINELKF 123 (366)
T ss_dssp T------------CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEE--EEESCC-----------SCEEEEEE
T ss_pred C------------CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEee--eecCCC-----------CcEEEEEE
Confidence 4 7899999954221 6799999999999999999877433 333444 78999999
Q ss_pred CC-CCcceecceeeccceEEEEeecccccceeeEEee--cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceee
Q 014005 179 PP-SFAHGYHLEWTENMATKIANVGNSVHARCQKVYP--HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN 254 (432)
Q Consensus 179 ~~-~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~ 254 (432)
+| ++.++++++. |+.|++||++ ..+....+. ..|...|.+++|+|++++++++ .|+.|++||++ .++...
T Consensus 124 ~~~~~~~l~s~~~--dg~i~iwd~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~ 197 (366)
T 3k26_A 124 HPRDPNLLLSVSK--DHALRLWNIQ---TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN-SKRMMN 197 (366)
T ss_dssp CSSCTTEEEEEET--TSCEEEEETT---TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC-SHHHHH
T ss_pred CCCCCCEEEEEeC--CCeEEEEEee---cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECC-CCcccc
Confidence 99 8999999998 9999999998 566666652 4789999999999999999999 99999999998 443322
Q ss_pred Eeec---------------------CCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccc
Q 014005 255 IVDM---------------------KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA 313 (432)
Q Consensus 255 ~~~~---------------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h 313 (432)
.+.. .......|...|.+++|+ + ++|++++.||.|++||++++.... ..+..+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~---~~~~~~ 271 (366)
T 3k26_A 198 AIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDI---DKIKPS 271 (366)
T ss_dssp HHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCG---GGCCTT
T ss_pred ccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccc---cccccC
Confidence 1100 000123488999999999 5 799999999999999998765311 111110
Q ss_pred ccccCCccceeeeecceeEEEEcCC--CCEEEEeeC-CeEEEEec---Ccc----eeEeecceeeeehhhhhcccccccc
Q 014005 314 AESHGSKSFFTEIIASISDIKFAND--GQHLLSRDY-MNLKVFRY---EPV----MTLSFCGIYVWILRQLQHSRFMSIY 383 (432)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l~s~~~-~~i~iwd~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (432)
.........+..|...|.+++|+|+ |++|++|+. |.|++||+ ++. ..+..|.. ...+..+.
T Consensus 272 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---------~~~v~~~~ 342 (366)
T 3k26_A 272 ESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKC---------GAAIRQTS 342 (366)
T ss_dssp CCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTC---------CSCEEEEE
T ss_pred CcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEccccc---------CCceEEEE
Confidence 0000111222334778999999999 999999855 99999999 222 24444421 12333332
Q ss_pred cceeeEEEEeecccceeeeecc
Q 014005 384 ALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 384 ~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
......++++|+.||.|.+|+.
T Consensus 343 ~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 343 FSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp ECTTSSEEEEEETTSEEEEEEC
T ss_pred eCCCCCeEEEEeCCCEEEEEEe
Confidence 3223336889999999999984
No 60
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.2e-33 Score=277.29 Aligned_cols=280 Identities=15% Similarity=0.253 Sum_probs=212.1
Q ss_pred cchhhccccchhhhhhhhcC--CCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcc
Q 014005 3 LNREEASASLEWKCSQAFGE--RNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQ 80 (432)
Q Consensus 3 ~~~~~~~~~~~w~~~~~~~~--~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 80 (432)
+++..+.....|++...-.. ........|.+.|++++|+|+|++|++|+.||+|+|||+.+++
T Consensus 399 ~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~--------------- 463 (694)
T 3dm0_A 399 VSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV--------------- 463 (694)
T ss_dssp EEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------------
T ss_pred EEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc---------------
Confidence 34455566778877531110 0112345799999999999999999999999999999998765
Q ss_pred ccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeee-ecCCCC
Q 014005 81 MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK-EMDHFP 159 (432)
Q Consensus 81 ~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~ 159 (432)
....+.+|. ..|.+++| +|++++|++++.|++|++||........+. ....|.
T Consensus 464 ------------~~~~~~~h~------------~~v~~~~~--s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~ 517 (694)
T 3dm0_A 464 ------------STRRFVGHT------------KDVLSVAF--SLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517 (694)
T ss_dssp ------------EEEEEECCS------------SCEEEEEE--CTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCS
T ss_pred ------------ceeEEeCCC------------CCEEEEEE--eCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCC
Confidence 336788999 99999999 899999999999999999998755432221 122333
Q ss_pred ccccccccccccccccccCCCCC--cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-
Q 014005 160 FVSSENTLLAEKNFMNEHNPPSF--AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA- 236 (432)
Q Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~- 236 (432)
..|.+++|+|++ ..+++++. |+.|++||++ ..++...+ .+|.+.|++++|+|++++|++|
T Consensus 518 -----------~~v~~~~~~~~~~~~~l~s~s~--d~~v~vwd~~---~~~~~~~~-~~h~~~v~~v~~spdg~~l~sg~ 580 (694)
T 3dm0_A 518 -----------DWVSCVRFSPNTLQPTIVSASW--DKTVKVWNLS---NCKLRSTL-AGHTGYVSTVAVSPDGSLCASGG 580 (694)
T ss_dssp -----------SCEEEEEECSCSSSCEEEEEET--TSCEEEEETT---TCCEEEEE-CCCSSCEEEEEECTTSSEEEEEE
T ss_pred -----------CcEEEEEEeCCCCcceEEEEeC--CCeEEEEECC---CCcEEEEE-cCCCCCEEEEEEeCCCCEEEEEe
Confidence 678999999986 46788887 9999999998 66777788 8999999999999999999999
Q ss_pred cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccc
Q 014005 237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 316 (432)
Q Consensus 237 ~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~ 316 (432)
.|+.|++||++ .++.+..+ .+...|.+++|+|++ .+|++++ ++.|++||+++++. +..+..|...
T Consensus 581 ~Dg~i~iwd~~-~~~~~~~~--------~~~~~v~~~~~sp~~-~~l~~~~-~~~i~iwd~~~~~~----~~~~~~~~~~ 645 (694)
T 3dm0_A 581 KDGVVLLWDLA-EGKKLYSL--------EANSVIHALCFSPNR-YWLCAAT-EHGIKIWDLESKSI----VEDLKVDLKA 645 (694)
T ss_dssp TTSBCEEEETT-TTEEEECC--------BCSSCEEEEEECSSS-SEEEEEE-TTEEEEEETTTTEE----EEEECCCCC-
T ss_pred CCCeEEEEECC-CCceEEEe--------cCCCcEEEEEEcCCC-cEEEEEc-CCCEEEEECCCCCC----hhhhcccccc
Confidence 99999999999 56655533 234579999999998 7777665 66799999998775 3444432100
Q ss_pred cC------CccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005 317 HG------SKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 317 ~~------~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~ 355 (432)
.. .......+...+++++|+|||++|++|+ ||+|++||+
T Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 646 EAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp ---------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred ccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 00 0000011122478999999999999985 499999998
No 61
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-32 Score=254.51 Aligned_cols=272 Identities=12% Similarity=0.121 Sum_probs=211.8
Q ss_pred EEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeec-CCccccccchhhhh
Q 014005 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEIE 113 (432)
Q Consensus 35 V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-h~~~~~~~~~~~~~ 113 (432)
+.+++|++ ..+++++.|+.|++||+.+++.. ..+.. |.
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~---------------------------~~~~~~~~------------ 134 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVS---------------------------ALAETDES------------ 134 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCCEE---------------------------EEEECCTT------------
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCcEe---------------------------EeeecCCC------------
Confidence 44566665 55788889999999999887632 33333 66
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
..|.+++| +|++++|++|+.||.|++||+.+++... .+..+. ..+.+++| ++..+++++. +
T Consensus 135 ~~v~~v~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~-----------~~v~~~~~--~~~~l~~~~~--d 195 (401)
T 4aez_A 135 TYVASVKW--SHDGSFLSVGLGNGLVDIYDVESQTKLR--TMAGHQ-----------ARVGCLSW--NRHVLSSGSR--S 195 (401)
T ss_dssp CCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEE--EECCCS-----------SCEEEEEE--ETTEEEEEET--T
T ss_pred CCEEEEEE--CCCCCEEEEECCCCeEEEEECcCCeEEE--EecCCC-----------CceEEEEE--CCCEEEEEcC--C
Confidence 89999999 8999999999999999999998876333 333444 67888888 5578888888 9
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (432)
+.+++||++. .......+ .+|...|.+++|+|+++++++| .|+.|++||++ .......+ ..|...|.+
T Consensus 196 g~i~i~d~~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~-------~~~~~~v~~ 264 (401)
T 4aez_A 196 GAIHHHDVRI--ANHQIGTL-QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR-SSIPKFTK-------TNHNAAVKA 264 (401)
T ss_dssp SEEEEEETTS--SSCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-CSSEEEEE-------CCCSSCCCE
T ss_pred CCEEEEeccc--CcceeeEE-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC-CCCccEEe-------cCCcceEEE
Confidence 9999999984 23445566 7899999999999999999999 99999999999 56666655 788999999
Q ss_pred EEEcCCCCcEEEEEe--CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE--e-eC
Q 014005 273 AEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS--R-DY 347 (432)
Q Consensus 273 ~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s--~-~~ 347 (432)
++|+|++..++++++ .|+.|++||+++++. +..+.. ...|.+++|+|+|++|++ | .+
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~----~~~~~~--------------~~~v~~~~~s~~~~~l~~~~g~~d 326 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGAR----VNTVDA--------------GSQVTSLIWSPHSKEIMSTHGFPD 326 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTTCCE----EEEEEC--------------SSCEEEEEECSSSSEEEEEECTTT
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCCCCE----EEEEeC--------------CCcEEEEEECCCCCeEEEEeecCC
Confidence 999998867888876 799999999998875 466654 478999999999999998 4 35
Q ss_pred CeEEEEec-C--ccee--EeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005 348 MNLKVFRY-E--PVMT--LSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG 406 (432)
Q Consensus 348 ~~i~iwd~-~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 406 (432)
+.|++||+ . .... +..|.. .+..+.......++++|+.||.|.+|+..
T Consensus 327 g~i~v~~~~~~~~~~~~~~~~h~~-----------~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 327 NNLSIWSYSSSGLTKQVDIPAHDT-----------RVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp CEEEEEEEETTEEEEEEEEECCSS-----------CCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred CcEEEEecCCccceeEEEecCCCC-----------CEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 99999999 2 3333 223322 22222222223368899999999999943
No 62
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.7e-32 Score=266.09 Aligned_cols=288 Identities=11% Similarity=0.087 Sum_probs=225.2
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..|.+.|++++|+|+|++||+++ ++.|+||+++++.. ..+....+.+|.
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-----------------------~~~~~~~~~~h~------- 63 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-----------------------KVPPVVQFTGHG------- 63 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-----------------------SSCSEEEECTTT-------
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-----------------------ccccceEEecCC-------
Confidence 46788999999999999999988 78999999987610 012346788998
Q ss_pred hhhhhcc-eeEEEEEEcC--CCCEEEEEeCCCeEEEEEccCc------ceeeeeecCCCCccccccccccccccccccCC
Q 014005 109 SLEIEEK-INRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQ------KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP 179 (432)
Q Consensus 109 ~~~~~~~-v~~l~~~~s~--~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 179 (432)
.. |.+++| +| ++++|++++.||.|++||+.++ .......+..+. ..+.+++|+
T Consensus 64 -----~~~v~~~~~--sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~s 125 (615)
T 1pgu_A 64 -----SSVVTTVKF--SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA-----------GPISDISWD 125 (615)
T ss_dssp -----TSCEEEEEE--CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS-----------SCEEEEEEC
T ss_pred -----CceEEEEEE--CcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccc-----------ccEEEEEEe
Confidence 89 999999 89 9999999999999999999765 333444444444 789999999
Q ss_pred CCCcceecceeecc--ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeE
Q 014005 180 PSFAHGYHLEWTEN--MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNI 255 (432)
Q Consensus 180 ~~~~~~~~~~~~~~--~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~ 255 (432)
|++.+++.++...+ +.+.+||. .+....+ .+|...|.+++|+|+++ .++++ .|+.|++||++ ..+....
T Consensus 126 ~~~~~l~~~~~~~~~~~~v~~~d~-----~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~-~~~~~~~ 198 (615)
T 1pgu_A 126 FEGRRLCVVGEGRDNFGVFISWDS-----GNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP-PFKFSAS 198 (615)
T ss_dssp TTSSEEEEEECCSSCSEEEEETTT-----CCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT-TBEEEEE
T ss_pred CCCCEEEEeccCCCCccEEEEEEC-----CCcceee-ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC-Ccceeee
Confidence 99999999887221 68888883 3466667 78999999999999998 78888 99999999998 6677666
Q ss_pred eecCCCCcCCCCc---ceEEEEEcCC-CCcEEEEEeCCCeEEEEEccccccccccceee-c---ccccccCCccceeeee
Q 014005 256 VDMKPSNMDDLTE---VITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-R---DAAESHGSKSFFTEII 327 (432)
Q Consensus 256 ~~~~~~~~~~~~~---~v~~~~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~---~h~~~~~~~~~~~~~~ 327 (432)
+ .+|.. .|++++|+|+ + ++|++++.||.|++||+++++. +..+ . .| .
T Consensus 199 ~-------~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~-------------~ 253 (615)
T 1pgu_A 199 D-------RTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEF----LKYIEDDQEPV-------------Q 253 (615)
T ss_dssp E-------CSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCE----EEECCBTTBCC-------------C
T ss_pred e-------cccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCE----eEEeccccccc-------------C
Confidence 5 77888 9999999999 8 9999999999999999998876 4666 4 55 7
Q ss_pred cceeEEEEcCCCCEEEEee-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeee
Q 014005 328 ASISDIKFANDGQHLLSRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSAL 403 (432)
Q Consensus 328 ~~v~~~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~ 403 (432)
..|.+++|+ ++++|++++ ++.|++||+ +.+..+..+.. . ........... ....+++|+.++.+.+|
T Consensus 254 ~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~------~-~~~~~~~~~~~-~~~~l~~~~~~g~i~~~ 324 (615)
T 1pgu_A 254 GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ------Q-LGNQQVGVVAT-GNGRIISLSLDGTLNFY 324 (615)
T ss_dssp SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTT------C-GGGCEEEEEEE-ETTEEEEEETTSCEEEE
T ss_pred CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC------c-ccCceeEEEeC-CCCeEEEEECCCCEEEE
Confidence 899999999 999999975 499999999 45555554421 0 01111111111 22257777788888888
Q ss_pred ccC
Q 014005 404 SAG 406 (432)
Q Consensus 404 ~~~ 406 (432)
+..
T Consensus 325 d~~ 327 (615)
T 1pgu_A 325 ELG 327 (615)
T ss_dssp ETT
T ss_pred ECC
Confidence 843
No 63
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.8e-32 Score=276.01 Aligned_cols=253 Identities=15% Similarity=0.178 Sum_probs=213.8
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..|++.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|.
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~---------------------------~~~~~~~~~------- 55 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV---------------------------EVRSIQVTE------- 55 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS-------
T ss_pred ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc---------------------------eEEEEecCC-------
Confidence 3688999999999999999999999999999998865 336788898
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..|.+++| +|++++|++++.||.|++||+.+++... .+..+. +.|.+++|+|++.+++++
T Consensus 56 -----~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~--~~~~~~-----------~~v~~~~~s~~~~~l~~~ 115 (814)
T 3mkq_A 56 -----TPVRAGKF--IARKNWIIVGSDDFRIRVFNYNTGEKVV--DFEAHP-----------DYIRSIAVHPTKPYVLSG 115 (814)
T ss_dssp -----SCEEEEEE--EGGGTEEEEEETTSEEEEEETTTCCEEE--EEECCS-----------SCEEEEEECSSSSEEEEE
T ss_pred -----CcEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCcEEE--EEecCC-----------CCEEEEEEeCCCCEEEEE
Confidence 99999999 8899999999999999999999887433 333444 789999999999999998
Q ss_pred eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
+. ++.+++||+... ..+...+ .+|...|.+++|+| ++..++++ .|+.|++||++ .+.....+ ...+
T Consensus 116 ~~--dg~i~vw~~~~~--~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~-~~~~~~~~------~~~~ 183 (814)
T 3mkq_A 116 SD--DLTVKLWNWENN--WALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG-QSTPNFTL------TTGQ 183 (814)
T ss_dssp ET--TSEEEEEEGGGT--SEEEEEE-ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETT-CSSCSEEE------ECCC
T ss_pred cC--CCEEEEEECCCC--ceEEEEE-cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCcceeEE------ecCC
Confidence 88 999999999831 2556666 78999999999999 88899999 99999999998 44444333 1344
Q ss_pred CcceEEEEEcC--CCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 267 TEVITSAEFHP--IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 267 ~~~v~~~~~~p--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
...+..++|+| ++ .+|++++.||.|++||+++++. ...+.+| ...|.+++|+|+|++|++
T Consensus 184 ~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~-------------~~~v~~~~~~~~~~~l~~ 245 (814)
T 3mkq_A 184 ERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSC----VATLEGH-------------MSNVSFAVFHPTLPIIIS 245 (814)
T ss_dssp TTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTEE----EEEEECC-------------SSCEEEEEECSSSSEEEE
T ss_pred CCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcE----EEEEcCC-------------CCCEEEEEEcCCCCEEEE
Confidence 57899999999 88 8999999999999999998775 5777776 789999999999999999
Q ss_pred eeC-CeEEEEec---CcceeEeecc
Q 014005 345 RDY-MNLKVFRY---EPVMTLSFCG 365 (432)
Q Consensus 345 ~~~-~~i~iwd~---~~~~~~~~~~ 365 (432)
++. |.|++||+ +.+..+..+.
T Consensus 246 ~~~dg~v~vwd~~~~~~~~~~~~~~ 270 (814)
T 3mkq_A 246 GSEDGTLKIWNSSTYKVEKTLNVGL 270 (814)
T ss_dssp EETTSCEEEEETTTCSEEEEECCSS
T ss_pred EeCCCeEEEEECCCCcEEEEeecCC
Confidence 854 99999999 5555555554
No 64
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=251.75 Aligned_cols=274 Identities=12% Similarity=0.142 Sum_probs=207.4
Q ss_pred ccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCC---CCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc
Q 014005 8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKT---GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT 84 (432)
Q Consensus 8 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~---g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (432)
+.....|++.. ++........|.+.|++++|+|+ |++|++|+.||.|++||+.+++.
T Consensus 43 d~~v~iw~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------------ 102 (357)
T 3i2n_A 43 TGVIQLYEIQH--GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM------------------ 102 (357)
T ss_dssp CEEEEEEEECS--SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS------------------
T ss_pred CcEEEEEeCCC--CcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc------------------
Confidence 44566676652 11112233478999999999999 79999999999999999988651
Q ss_pred ccccCCcceeeeeecCCccccccchhhhhcceeEEEEEE----cCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCC
Q 014005 85 STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA----APNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHF 158 (432)
Q Consensus 85 ~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~----s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~ 158 (432)
....+.+|. ..|.++.|.+ ++++++|++++.|+.|++||+..+. ...+..+..+
T Consensus 103 --------~~~~~~~~~------------~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 162 (357)
T 3i2n_A 103 --------PVYSVKGHK------------EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE 162 (357)
T ss_dssp --------CSEEECCCS------------SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTS
T ss_pred --------cEEEEEecc------------cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCC
Confidence 226788898 9999997743 6889999999999999999998765 2222222211
Q ss_pred Ccccccccccccccccccc----CCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC---CCC
Q 014005 159 PFVSSENTLLAEKNFMNEH----NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCE 231 (432)
Q Consensus 159 ~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~ 231 (432)
. ...+.++. |++++.++++++. ++.+++||++ ..+.... ..|...|.+++|+| ++.
T Consensus 163 ~----------~~~v~~~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~---~~~~~~~--~~~~~~v~~~~~~~~~~~~~ 225 (357)
T 3i2n_A 163 N----------KRDCWTVAFGNAYNQEERVVCAGYD--NGDIKLFDLR---NMALRWE--TNIKNGVCSLEFDRKDISMN 225 (357)
T ss_dssp C----------CCCEEEEEEECCCC-CCCEEEEEET--TSEEEEEETT---TTEEEEE--EECSSCEEEEEESCSSSSCC
T ss_pred C----------CCceEEEEEEeccCCCCCEEEEEcc--CCeEEEEECc---cCceeee--cCCCCceEEEEcCCCCCCCC
Confidence 1 13566666 8899999999988 9999999998 5555443 46888999999999 899
Q ss_pred EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCc-EEEEEeCCCeEEEEEcccccccc-----
Q 014005 232 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCD----- 304 (432)
Q Consensus 232 ~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~i~iwd~~~~~~~~----- 304 (432)
.++++ .|+.|++||++ .+.....+.. ....+|...|++++|+|++ + +|++++.||.|++||++.+....
T Consensus 226 ~l~~~~~dg~i~i~d~~-~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 301 (357)
T 3i2n_A 226 KLVATSLEGKFHVFDMR-TQHPTKGFAS--VSEKAHKSTVWQVRHLPQN-RELFLTAGGAGGLHLWKYEYPIQRSKKDSE 301 (357)
T ss_dssp EEEEEESTTEEEEEEEE-EEETTTEEEE--EEEECCSSCEEEEEEETTE-EEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred EEEEECCCCeEEEEeCc-CCCcccceee--eccCCCcCCEEEEEECCCC-CcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence 99999 99999999998 4443333200 0124889999999999998 6 89999999999999998654310
Q ss_pred ----------ccceeecccccccCCccceeeeecceeEEEEcCCCCEEE-Eee-CCeEEEEec
Q 014005 305 ----------HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRD-YMNLKVFRY 355 (432)
Q Consensus 305 ----------~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~-s~~-~~~i~iwd~ 355 (432)
+.+..+.+| ...|.+++|+|+|++|+ +++ |+.|++||+
T Consensus 302 g~~~~~~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 302 GIEMGVAGSVSLLQNVTLS-------------TQPISSLDWSPDKRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp SCCCCCCCEEEEEEEEECC-------------SSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred CCccccccccceeeccccC-------------CCCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence 113444444 78999999999999998 665 599999998
No 65
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.4e-32 Score=251.35 Aligned_cols=283 Identities=12% Similarity=0.074 Sum_probs=213.6
Q ss_pred hhccccchhhhhhhhcC---CCCCccccCCCcEEEEEEcCC----C---CEEEEecccceEEEEEecCCcCCCCccccch
Q 014005 6 EEASASLEWKCSQAFGE---RNPDEELQDVDIVSAIEFDKT----G---DYLAVGDRGGRVILFETVGGKNTPNQHISRS 75 (432)
Q Consensus 6 ~~~~~~~~w~~~~~~~~---~~~~~~~~h~~~V~~~~fsp~----g---~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~ 75 (432)
..+.....|++...-.. ........|...|++++|+|+ | ++|++++.||.|++|++.+++..
T Consensus 33 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~-------- 104 (397)
T 1sq9_A 33 SGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET-------- 104 (397)
T ss_dssp ETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT--------
T ss_pred cCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc--------
Confidence 44455566666532100 012233468999999999999 9 99999999999999999887631
Q ss_pred hhhccccccccccCCcceeeeeecC-----CccccccchhhhhcceeEEEEEEc----CCCCE-EEEEeCCCeEEEEEcc
Q 014005 76 ELEKQMDFTSTSHPEYRYKTEFQSH-----EPEFDYLKSLEIEEKINRVRWCAA----PNGSM-FILSTNDKTIKLWKVR 145 (432)
Q Consensus 76 ~~~~~~~~~~~~~p~~~~~~~~~~h-----~~~~~~~~~~~~~~~v~~l~~~~s----~~~~~-l~s~~~d~~i~iwd~~ 145 (432)
.......+.+| . ..|.+++| + |++++ |++++.||.|++||+.
T Consensus 105 --------------~~~~~~~~~~~~~~~~~------------~~v~~~~~--~~~~~~~~~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 105 --------------KKVIFEKLDLLDSDMKK------------HSFWALKW--GASNDRLLSHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp --------------CCEEEEEECCSCTTGGG------------SCEEEEEE--ECCC----CEEEEEEETTSCEEEEEEE
T ss_pred --------------ccccceeecccccccCC------------CcEEEEEE--eeccCCCCceEEEEEeCCCcEEEEeCC
Confidence 01113566667 5 78999999 6 89999 9999999999999998
Q ss_pred C------cceee-----eeec-----CCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeeccccccee
Q 014005 146 D------QKVKK-----IKEM-----DHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARC 209 (432)
Q Consensus 146 ~------~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~ 209 (432)
. ++... .... ..+ ...+.+++|+|++ .+++++. ++.+++||++ ..++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~-~l~~~~~--dg~i~i~d~~---~~~~ 219 (397)
T 1sq9_A 157 PFADESNSLTLNWSPTLELQGTVESPMTP-----------SQFATSVDISERG-LIATGFN--NGTVQISELS---TLRP 219 (397)
T ss_dssp SSSSHHHHTTTCCCCEEEEEEEECCSSSS-----------CCCCCEEEECTTS-EEEEECT--TSEEEEEETT---TTEE
T ss_pred ccccccccceeeccCcceeeeeeccccCC-----------CCCceEEEECCCc-eEEEEeC--CCcEEEEECC---CCce
Confidence 7 44221 1110 122 3789999999999 8888888 9999999998 6778
Q ss_pred eEEeecC---C---CCCeeEEEeCCCCCEEEEE-cC---CeEEEEeCCCCCceeeEeecCCCCcCC-------------C
Q 014005 210 QKVYPHA---H---DFNINSISNNSDCETFVSA-DD---LRINLWNLEISDQCFNIVDMKPSNMDD-------------L 266 (432)
Q Consensus 210 ~~~~~~~---~---~~~i~~~~~~~~~~~l~~~-~d---~~i~lwd~~~~~~~~~~~~~~~~~~~~-------------~ 266 (432)
+..+ .. | ...|.+++|+|++++|+++ .| +.|++||++ ..+.+..+ .. |
T Consensus 220 ~~~~-~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~-~~~~~~~~-------~~~~~~~~~~~~~~~~ 290 (397)
T 1sq9_A 220 LYNF-ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE-FGERIGSL-------SVPTHSSQASLGEFAH 290 (397)
T ss_dssp EEEE-ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT-TCCEEEEE-------CBC--------CCBSB
T ss_pred eEEE-eccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECC-CCccccee-------ccCccccccccccccc
Confidence 8877 66 8 8999999999999999999 88 999999999 56666665 44 8
Q ss_pred CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeec------ccccccC--CccceeeeecceeEEEEcCC
Q 014005 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR------DAAESHG--SKSFFTEIIASISDIKFAND 338 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~h~~~~~--~~~~~~~~~~~v~~~~~s~d 338 (432)
...|.+++|+|++ ++|++++.||.|++||+++++. +..+. .|..+.. .......|...|.+++|+|+
T Consensus 291 ~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~ 365 (397)
T 1sq9_A 291 SSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKER----ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK 365 (397)
T ss_dssp SSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEE----EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred CCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCce----eEEEecccCcccchhhhhccccccccccCCceeEEEeccc
Confidence 8999999999999 9999999999999999998876 56666 3210000 00011223678999999999
Q ss_pred C----------CEEEEee-CCeEEEEec
Q 014005 339 G----------QHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 339 g----------~~l~s~~-~~~i~iwd~ 355 (432)
| ++|++++ |+.|++||+
T Consensus 366 g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 366 GWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp TTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred cccccccccccceEEEecCCCcEEEEEc
Confidence 8 7899875 599999997
No 66
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-31 Score=284.02 Aligned_cols=249 Identities=17% Similarity=0.258 Sum_probs=209.7
Q ss_pred cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
...|.+.|++++|+|+|++||+|+.||+|++||+.+++ .+..+.+|.
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~---------------------------~~~~~~~h~------ 657 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE---------------------------KLLDIKAHE------ 657 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------------------------EEEEECCCS------
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC---------------------------EEEEeccCC------
Confidence 34689999999999999999999999999999998876 336788999
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC--Ccce
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS--FAHG 185 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~ 185 (432)
..|.+++| +|+++++++++.|+.|++||+.+++... .+..+. ..+.+++|+++ ...+
T Consensus 658 ------~~v~~~~~--s~~~~~l~s~~~d~~v~vwd~~~~~~~~--~~~~~~-----------~~v~~~~~~~~~~~~~l 716 (1249)
T 3sfz_A 658 ------DEVLCCAF--SSDDSYIATCSADKKVKIWDSATGKLVH--TYDEHS-----------EQVNCCHFTNKSNHLLL 716 (1249)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEE--EEECCS-----------SCEEEEEECSSSSCCEE
T ss_pred ------CCEEEEEE--ecCCCEEEEEeCCCeEEEEECCCCceEE--EEcCCC-----------CcEEEEEEecCCCceEE
Confidence 99999999 8999999999999999999999887433 333444 78999999995 4567
Q ss_pred ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCC----
Q 014005 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP---- 260 (432)
Q Consensus 186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~---- 260 (432)
++++. |+.+++||+. .+.+...+ .+|.+.|.+++|+|+++.++++ .||.|++||++ .+.....+....
T Consensus 717 ~sg~~--d~~v~vwd~~---~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~-~~~~~~~~~~~~~~~~ 789 (1249)
T 3sfz_A 717 ATGSN--DFFLKLWDLN---QKECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR-SANERKSINVKRFFLS 789 (1249)
T ss_dssp EEEET--TSCEEEEETT---SSSEEEEE-CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGG-GTEEEEEEECCCCC--
T ss_pred EEEeC--CCeEEEEECC---Ccchhhee-cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCC-CCcccceecccccccc
Confidence 77777 9999999998 77788888 7999999999999999999999 99999999998 444333322110
Q ss_pred ---------------------------------------C-----CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 014005 261 ---------------------------------------S-----NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (432)
Q Consensus 261 ---------------------------------------~-----~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd 296 (432)
. ...+|...|.+++|+|++ .++++++.||.|++||
T Consensus 790 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd 868 (1249)
T 3sfz_A 790 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWN 868 (1249)
T ss_dssp ------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEE
T ss_pred cCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEE
Confidence 0 012677889999999999 9999999999999999
Q ss_pred ccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 297 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
+.++.. ...+.+| ...|.+++|+|+|++|++++. +.|++||+
T Consensus 869 ~~~~~~----~~~~~~h-------------~~~v~~v~~spdg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 869 IDSRLK----VADCRGH-------------LSWVHGVMFSPDGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp TTTTEE----EEEECCC-------------SSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred cCCCce----eeecCCC-------------ccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 998776 5777887 788999999999999998754 99999996
No 67
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1e-32 Score=253.97 Aligned_cols=255 Identities=12% Similarity=0.160 Sum_probs=201.4
Q ss_pred cCCCcEEEEEEcCC----CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 30 ~h~~~V~~~~fsp~----g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
.|...|++++|+|+ |++|++|+.||.|++||+.+++ .+..+.+|.
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---------------------------~~~~~~~~~---- 115 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ---------------------------CIKHYVGHG---- 115 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC---------------------------EEEEEESCC----
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce---------------------------EeeeecCCC----
Confidence 36788999999999 6799999999999999998765 346788898
Q ss_pred ccchhhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeee-ecCCCCccccccccccccccccccCCCCCc
Q 014005 106 YLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIK-EMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 183 (432)
..|.+++| +| ++++|++++.||.|++||+.+++..... ....+. ..|.+++|+|++.
T Consensus 116 --------~~i~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~ 174 (366)
T 3k26_A 116 --------NAINELKF--HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR-----------DEVLSADYDLLGE 174 (366)
T ss_dssp --------SCEEEEEE--CSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS-----------SCEEEEEECTTSS
T ss_pred --------CcEEEEEE--CCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc-----------CceeEEEECCCCC
Confidence 99999999 88 8999999999999999999987644332 123444 7899999999999
Q ss_pred ceecceeeccceEEEEeecccccceeeEEe---------------------------ecCCCCCeeEEEeCCCCCEEEEE
Q 014005 184 HGYHLEWTENMATKIANVGNSVHARCQKVY---------------------------PHAHDFNINSISNNSDCETFVSA 236 (432)
Q Consensus 184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~---------------------------~~~~~~~i~~~~~~~~~~~l~~~ 236 (432)
++++++. |+.+++||++.. +....+ ...|...|.+++|+ +++++++
T Consensus 175 ~l~~~~~--dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 247 (366)
T 3k26_A 175 KIMSCGM--DHSLKLWRINSK---RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK 247 (366)
T ss_dssp EEEEEET--TSCEEEEESCSH---HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE
T ss_pred EEEEecC--CCCEEEEECCCC---ccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE
Confidence 9999998 999999999832 222111 13489999999998 6799999
Q ss_pred -cCCeEEEEeCCCCCceeeEeecC------CCCcCCCCcceEEEEEcCC--CCcEEEEEeCCCeEEEEEccccccccccc
Q 014005 237 -DDLRINLWNLEISDQCFNIVDMK------PSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSA 307 (432)
Q Consensus 237 -~d~~i~lwd~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 307 (432)
.|+.|++||++........+... ...+..|...|++++|+|+ + ++|++|+.||.|++||+++++......
T Consensus 248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~ 326 (366)
T 3k26_A 248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLYVWDLEVEDPHKAKC 326 (366)
T ss_dssp CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEEEEECCSSSGGGCEE
T ss_pred ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEEEEECCCCCCccccc
Confidence 99999999998432211100000 0123678888999999999 8 999999999999999999876532223
Q ss_pred eeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 308 ~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
..+..|. +...|.+++|+|+|++|++++. |.|++||+
T Consensus 327 ~~~~~~~-----------~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 327 TTLTHHK-----------CGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp EEECCTT-----------CCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred eEEcccc-----------cCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 4566541 1478999999999999999755 99999997
No 68
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.2e-31 Score=253.52 Aligned_cols=270 Identities=13% Similarity=0.135 Sum_probs=207.6
Q ss_pred hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005 6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS 85 (432)
Q Consensus 6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (432)
..+.....|..... +.......|.+.|++++|+|++ +|++|+.||+|++||+++++
T Consensus 139 s~dg~i~vwd~~~~---~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~-------------------- 194 (464)
T 3v7d_B 139 ADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC-------------------- 194 (464)
T ss_dssp ETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE--------------------
T ss_pred cCCCcEEEEECCCC---cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc--------------------
Confidence 44455566665421 1112223689999999999988 89999999999999998865
Q ss_pred cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccc--
Q 014005 86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS-- 163 (432)
Q Consensus 86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-- 163 (432)
....+.+|. ..|.+++|.+.+++.++++++.|+.|++||+.++................
T Consensus 195 -------~~~~~~~h~------------~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 255 (464)
T 3v7d_B 195 -------CTHVFEGHN------------STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 255 (464)
T ss_dssp -------EEEEECCCS------------SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESC
T ss_pred -------EEEEECCCC------------CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec
Confidence 346788899 99999999776888999999999999999998765321110000000000
Q ss_pred ------cccc--ccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEE
Q 014005 164 ------ENTL--LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS 235 (432)
Q Consensus 164 ------~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 235 (432)
.... .....+.++ ++++.++++++. ++.+++||+. ..+++..+ .+|...|.+++|+|+++.+++
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~--d~~i~vwd~~---~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s 327 (464)
T 3v7d_B 256 PEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSY--DNTLIVWDVA---QMKCLYIL-SGHTDRIYSTIYDHERKRCIS 327 (464)
T ss_dssp GGGCTTEEEEECCCSSCEEEE--EEETTEEEEEET--TSCEEEEETT---TTEEEEEE-CCCSSCEEEEEEETTTTEEEE
T ss_pred cCCCeEEEEEccCccceEEEE--cCCCCEEEEEeC--CCeEEEEECC---CCcEEEEe-cCCCCCEEEEEEcCCCCEEEE
Confidence 0000 001333333 677888898888 9999999998 77888888 889999999999999999999
Q ss_pred E-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccc
Q 014005 236 A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA 314 (432)
Q Consensus 236 ~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~ 314 (432)
| .|+.|++||++ +++.+..+ .+|...|.+++|+ + .+|++++.||.|++||++++.. ...+..
T Consensus 328 g~~dg~i~vwd~~-~~~~~~~~-------~~h~~~v~~~~~~--~-~~l~s~s~dg~v~vwd~~~~~~----~~~~~~-- 390 (464)
T 3v7d_B 328 ASMDTTIRIWDLE-NGELMYTL-------QGHTALVGLLRLS--D-KFLVSAAADGSIRGWDANDYSR----KFSYHH-- 390 (464)
T ss_dssp EETTSCEEEEETT-TTEEEEEE-------CCCSSCEEEEEEC--S-SEEEEEETTSEEEEEETTTCCE----EEEEEC--
T ss_pred EeCCCcEEEEECC-CCcEEEEE-------eCCCCcEEEEEEc--C-CEEEEEeCCCcEEEEECCCCce----eeeecC--
Confidence 9 99999999999 67777766 7899999999997 4 7899999999999999998654 222222
Q ss_pred cccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 315 ESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
...+..++|++++++|++|+++.|++||+
T Consensus 391 ------------~~~~~~~~~~~~~~~l~~~~dg~i~iwd~ 419 (464)
T 3v7d_B 391 ------------TNLSAITTFYVSDNILVSGSENQFNIYNL 419 (464)
T ss_dssp ------------TTCCCEEEEEECSSEEEEEETTEEEEEET
T ss_pred ------------CCCccEEEEEeCCCEEEEecCCeEEEEEC
Confidence 46788899999999999998999999999
No 69
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=6.6e-32 Score=254.41 Aligned_cols=264 Identities=15% Similarity=0.184 Sum_probs=207.0
Q ss_pred ccccCCCcEEEEEEcCC-CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 27 EELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 27 ~~~~h~~~V~~~~fsp~-g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
..+.|.+.|++++|+|+ +.+||+|+.||.|++|++........ ..........+.+|.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------~~~~~~~~~~~~~h~---- 181 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------------PSGECQPDLRLRGHQ---- 181 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------TTCCCCCSEEEECCS----
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------------ccccCCCcEEecCCC----
Confidence 34678999999999997 78999999999999999976321100 000133456788998
Q ss_pred ccchhhhhcceeEEEEEEcCCCC-EEEEEeCCCeEEEEEccCcce-----eeeeecCCCCccccccccccccccccccCC
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKV-----KKIKEMDHFPFVSSENTLLAEKNFMNEHNP 179 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 179 (432)
..|.+++| +|++. +|++|+.||.|++||+..+.. .....+..+. ..|.+++|+
T Consensus 182 --------~~v~~l~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~-----------~~v~~v~~~ 240 (430)
T 2xyi_A 182 --------KEGYGLSW--NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT-----------AVVEDVAWH 240 (430)
T ss_dssp --------SCCCCEEE--CTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCS-----------SCEEEEEEC
T ss_pred --------CCeEEEEe--CCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCC-----------CCEeeeEEe
Confidence 89999999 88888 999999999999999987321 1122333344 789999999
Q ss_pred C-CCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEe
Q 014005 180 P-SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIV 256 (432)
Q Consensus 180 ~-~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~ 256 (432)
| +...+++++. ++.|++||++.....++...+ ..|...|++++|+|+++ ++++| .||.|++||++.....+..+
T Consensus 241 p~~~~~l~s~~~--dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~ 317 (430)
T 2xyi_A 241 LLHESLFGSVAD--DQKLMIWDTRNNNTSKPSHTV-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 317 (430)
T ss_dssp SSCTTEEEEEET--TSEEEEEETTCSCSSSCSEEE-ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE
T ss_pred CCCCCEEEEEeC--CCeEEEEECCCCCCCcceeEe-ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe
Confidence 9 5677778877 999999999854333566666 68999999999999987 57788 99999999999545566655
Q ss_pred ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccc----------cccceeecccccccCCccceeee
Q 014005 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC----------DHSARILRDAAESHGSKSFFTEI 326 (432)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~h~~~~~~~~~~~~~ 326 (432)
..|...|++++|+|++..+|++++.||.|++||++..... ...+..+.+|
T Consensus 318 -------~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h------------- 377 (430)
T 2xyi_A 318 -------ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH------------- 377 (430)
T ss_dssp -------ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC-------------
T ss_pred -------ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC-------------
Confidence 7899999999999998568999999999999999873210 0113444554
Q ss_pred ecceeEEEEcCCCC-EEEEeeC-CeEEEEec
Q 014005 327 IASISDIKFANDGQ-HLLSRDY-MNLKVFRY 355 (432)
Q Consensus 327 ~~~v~~~~~s~dg~-~l~s~~~-~~i~iwd~ 355 (432)
...|.+++|+|+++ +|+++++ |.|++|++
T Consensus 378 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 378 TAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred CCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 77899999999999 7887654 99999999
No 70
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.9e-31 Score=250.54 Aligned_cols=282 Identities=12% Similarity=0.080 Sum_probs=210.0
Q ss_pred hccccchhhhhhhhcCCCCCcc-ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005 7 EASASLEWKCSQAFGERNPDEE-LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS 85 (432)
Q Consensus 7 ~~~~~~~w~~~~~~~~~~~~~~-~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (432)
.+.....|.+..- ..... ..|.+.|++++|+|++++|++|+.|++|++||+.+++..
T Consensus 117 ~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~------------------ 174 (420)
T 3vl1_A 117 TEGDIKVLDSNFN----LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP------------------ 174 (420)
T ss_dssp TTSCEEEECTTSC----EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC------------------
T ss_pred CCCCEEEEeCCCc----ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc------------------
Confidence 3445566665421 11222 378999999999999999999999999999999887643
Q ss_pred cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecC-CCC-cccc
Q 014005 86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD-HFP-FVSS 163 (432)
Q Consensus 86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~-~~~~ 163 (432)
..+.+|. ..|.+++| +|++++|++++.|+.|++||+.+++........ .+. .+..
T Consensus 175 ---------~~~~~h~------------~~v~~~~~--~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~ 231 (420)
T 3vl1_A 175 ---------RTLIGHR------------ATVTDIAI--IDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNS 231 (420)
T ss_dssp ---------EEEECCS------------SCEEEEEE--ETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEE
T ss_pred ---------eEEcCCC------------CcEEEEEE--cCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccE
Confidence 6788999 99999999 889999999999999999999988744332211 111 0000
Q ss_pred cc---------ccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EE
Q 014005 164 EN---------TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TF 233 (432)
Q Consensus 164 ~~---------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l 233 (432)
+. .......+.+++|+|++.++++++. ++.+++||++ ..+....+...|...|.+++|+|+++ ++
T Consensus 232 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 306 (420)
T 3vl1_A 232 IALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV--SGVITVHNVF---SKEQTIQLPSKFTCSCNSLTVDGNNANYI 306 (420)
T ss_dssp EEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET--TSCEEEEETT---TCCEEEEECCTTSSCEEEEEECSSCTTEE
T ss_pred EEEecCCcceeeecccCcccceEEcCCCCEEEEEcC--CCeEEEEECC---CCceeEEcccccCCCceeEEEeCCCCCEE
Confidence 00 0112467889999999999999988 9999999998 55666666467889999999999998 99
Q ss_pred EEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC-CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeec
Q 014005 234 VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 311 (432)
Q Consensus 234 ~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 311 (432)
++| .||.|++||++.....+..+ .. |...|+++.+ +++ ++|++++.||.|++||+........ ...+.
T Consensus 307 ~~g~~dg~i~vwd~~~~~~~~~~~-------~~~~~~~v~~~~~-~~~-~~l~s~~~d~~v~iw~~~~~~~~~~-~~~~~ 376 (420)
T 3vl1_A 307 YAGYENGMLAQWDLRSPECPVGEF-------LINEGTPINNVYF-AAG-ALFVSSGFDTSIKLDIISDPESERP-AIEFE 376 (420)
T ss_dssp EEEETTSEEEEEETTCTTSCSEEE-------EESTTSCEEEEEE-ETT-EEEEEETTTEEEEEEEECCTTCCSC-EECTT
T ss_pred EEEeCCCeEEEEEcCCCcCchhhh-------hccCCCCceEEEe-CCC-CEEEEecCCccEEEEeccCCCCCcc-ceecc
Confidence 999 99999999999444445544 33 6677888855 466 8999999999999999987432100 00000
Q ss_pred ccccccCCccceeeeecceeEEEEcCCCC----EEEEeeCCeEEEEec
Q 014005 312 DAAESHGSKSFFTEIIASISDIKFANDGQ----HLLSRDYMNLKVFRY 355 (432)
Q Consensus 312 ~h~~~~~~~~~~~~~~~~v~~~~~s~dg~----~l~s~~~~~i~iwd~ 355 (432)
. ...+..+...|.+++|+|+++ ++++|++|.+.+|++
T Consensus 377 ~-------~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 377 T-------PTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp S-------CEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred C-------ccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEec
Confidence 0 011122368899999999998 666677799999997
No 71
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.6e-31 Score=249.92 Aligned_cols=269 Identities=16% Similarity=0.224 Sum_probs=215.9
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
.|...|+|++| ++++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~---------------------------~~~~~~~h~-------- 173 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE---------------------------CKRILTGHT-------- 173 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC---------------------------EEEEECCCS--------
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe---------------------------EEEEEcCCC--------
Confidence 46678999887 79999999999999999998765 346788999
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
..|.+++| +++++++|+.||.|++||+.+++.. ..+..+. ..+.+++|++ ..+++++
T Consensus 174 ----~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~--~~~~~h~-----------~~v~~l~~~~--~~l~s~s 230 (435)
T 1p22_A 174 ----GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEML--NTLIHHC-----------EAVLHLRFNN--GMMVTCS 230 (435)
T ss_dssp ----SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEE--EEECCCC-----------SCEEEEECCT--TEEEEEE
T ss_pred ----CcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEE--EEEcCCC-----------CcEEEEEEcC--CEEEEee
Confidence 99999988 6789999999999999999988743 3334444 7788899874 4788888
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
. |+.+++||+...........+ .+|...|.++++ +++++++| .|+.|++||++ +++.+..+ .+|..
T Consensus 231 ~--dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~-~~~~~~~~-------~~~~~ 297 (435)
T 1p22_A 231 K--DRSIAVWDMASPTDITLRRVL-VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTS-TCEFVRTL-------NGHKR 297 (435)
T ss_dssp T--TSCEEEEECSSSSCCEEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-TCCEEEEE-------ECCSS
T ss_pred C--CCcEEEEeCCCCCCceeeeEe-cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC-cCcEEEEE-------cCCCC
Confidence 7 999999999854333333555 789999999999 77899999 99999999999 66777766 78999
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~- 347 (432)
.|.++.++ + .++++|+.||.|++||+++++. +..+.+| ...|.+++| ++.+|++|+.
T Consensus 298 ~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h-------------~~~v~~~~~--~~~~l~sg~~d 355 (435)
T 1p22_A 298 GIACLQYR--D-RLVVSGSSDNTIRLWDIECGAC----LRVLEGH-------------EELVRCIRF--DNKRIVSGAYD 355 (435)
T ss_dssp CEEEEEEE--T-TEEEEEETTSCEEEEETTTCCE----EEEECCC-------------SSCEEEEEC--CSSEEEEEETT
T ss_pred cEEEEEeC--C-CEEEEEeCCCeEEEEECCCCCE----EEEEeCC-------------cCcEEEEEe--cCCEEEEEeCC
Confidence 99999994 5 7899999999999999998876 6788887 788999999 7889999754
Q ss_pred CeEEEEec---C---------cceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005 348 MNLKVFRY---E---------PVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG 406 (432)
Q Consensus 348 ~~i~iwd~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 406 (432)
|.|++||+ . ++..+..|.. .+..+..+ ...+++|+.||.|.+|+..
T Consensus 356 g~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~-----------~v~~l~~~--~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 356 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSG-----------RVFRLQFD--EFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp SCEEEEEHHHHTSTTSCTTTTEEEEECCCSS-----------CCCCEEEC--SSCEEECCSSSEEEEEC--
T ss_pred CcEEEEECCCCCCccccccchheeeccCCCC-----------CeEEEEeC--CCEEEEEeCCCEEEEEECC
Confidence 99999999 2 4555555543 22222221 2248999999999999943
No 72
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.6e-31 Score=238.95 Aligned_cols=253 Identities=12% Similarity=0.037 Sum_probs=190.8
Q ss_pred eeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccc
Q 014005 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (432)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 174 (432)
..+.+|. +.|.+++| +|+|++|++|+.|++|++||+..+..+.+..+..|. +.|.
T Consensus 3 ~~~~~h~------------~~V~~~~~--s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~-----------~~V~ 57 (297)
T 2pm7_B 3 VIANAHN------------EMIHDAVM--DYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHE-----------GPVW 57 (297)
T ss_dssp EECCSCS------------SCEEEEEE--CTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCS-----------SCEE
T ss_pred eeccCCc------------CceEEEEE--CCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcccc-----------CCeE
Confidence 4577898 99999999 999999999999999999999765433444555666 8899
Q ss_pred cccCCCC--CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCCCC
Q 014005 175 NEHNPPS--FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEIS 249 (432)
Q Consensus 175 ~~~~~~~--~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~-~d~~i~lwd~~~~ 249 (432)
+++|+++ +.++++++. |+.|++||++.. ...++..+ .+|...|.+++|+|+ +.+|+++ .|+.|++||++..
T Consensus 58 ~v~~s~~~~g~~l~s~s~--D~~v~iWd~~~~-~~~~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 58 RVDWAHPKFGTILASCSY--DGKVMIWKEENG-RWSQIAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN 133 (297)
T ss_dssp EEEECCGGGCSEEEEEET--TTEEEEEEBSSS-CBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred EEEecCCCcCCEEEEEcC--CCEEEEEEcCCC-ceEEEEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence 9999864 789999998 999999999843 12344555 689999999999997 8899999 9999999999833
Q ss_pred Cce-eeEeecCCCCcCCCCcceEEEEEcCCC------------CcEEEEEeCCCeEEEEEccccccccccceeecccccc
Q 014005 250 DQC-FNIVDMKPSNMDDLTEVITSAEFHPIY------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 316 (432)
Q Consensus 250 ~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~ 316 (432)
... ... +.+|...|++++|+|++ .++|++|+.|+.|++||+++++........+.+|
T Consensus 134 ~~~~~~~-------~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H--- 203 (297)
T 2pm7_B 134 GTTSPII-------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--- 203 (297)
T ss_dssp SCBCCEE-------EECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC---
T ss_pred Cceeeee-------eecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC---
Confidence 221 222 37899999999999972 1699999999999999998765221124667776
Q ss_pred cCCccceeeeecceeEEEEcCCC---CEEEEee-CCeEEEEecCc----ce--eEeecceeeeehhhhhcccccccccce
Q 014005 317 HGSKSFFTEIIASISDIKFANDG---QHLLSRD-YMNLKVFRYEP----VM--TLSFCGIYVWILRQLQHSRFMSIYALS 386 (432)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~s~dg---~~l~s~~-~~~i~iwd~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (432)
...|.+++|+|++ .+||+++ |++|++||+.. .. .+..+. ....+..+..+.
T Consensus 204 ----------~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~---------~~~~v~~~~~s~ 264 (297)
T 2pm7_B 204 ----------SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEK---------FPDVLWRASWSL 264 (297)
T ss_dssp ----------SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSC---------CSSCEEEEEECS
T ss_pred ----------CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeeccc---------CCCcEEEEEECC
Confidence 7899999999995 8899975 59999999921 11 111011 011222222222
Q ss_pred eeEEEEeecccceeeeecc
Q 014005 387 CVIYIITTLYLINLSALSA 405 (432)
Q Consensus 387 ~~~~~~~g~~~~~i~~~~~ 405 (432)
...++++|+.|+.|++|+.
T Consensus 265 ~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 265 SGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp SSCCEEEEETTSCEEEEEE
T ss_pred CCCEEEEEcCCCcEEEEEE
Confidence 2335889999999999984
No 73
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.3e-31 Score=252.29 Aligned_cols=277 Identities=11% Similarity=0.199 Sum_probs=215.6
Q ss_pred ccCCCc-EEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 29 LQDVDI-VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 29 ~~h~~~-V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
..|.+. +.|+.| ++++|++|+.||+|++||+.+++ ....+.+|.
T Consensus 118 ~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~---------------------------~~~~~~~h~------ 162 (464)
T 3v7d_B 118 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK---------------------------FLLQLSGHD------ 162 (464)
T ss_dssp ECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS------
T ss_pred cCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc---------------------------EEEEEeCCC------
Confidence 467666 577776 46799999999999999998865 347788999
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCC--CCCcce
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP--PSFAHG 185 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~ 185 (432)
..|.+++| ++++ ++++|+.||+|++||+.+++.. ..+..+. +.|.+++++ +++.++
T Consensus 163 ------~~V~~l~~--~~~~-~l~s~s~dg~i~vwd~~~~~~~--~~~~~h~-----------~~v~~l~~~~~~~~~~l 220 (464)
T 3v7d_B 163 ------GGVWALKY--AHGG-ILVSGSTDRTVRVWDIKKGCCT--HVFEGHN-----------STVRCLDIVEYKNIKYI 220 (464)
T ss_dssp ------SCEEEEEE--CSTT-EEEEEETTSCEEEEETTTTEEE--EEECCCS-----------SCEEEEEEEESSSCEEE
T ss_pred ------cCEEEEEE--cCCC-EEEEEeCCCCEEEEECCCCcEE--EEECCCC-----------CccEEEEEecCCCCCEE
Confidence 99999999 7777 9999999999999999988743 3344444 788888887 577889
Q ss_pred ecceeeccceEEEEeecccccce--------------------eeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEE
Q 014005 186 YHLEWTENMATKIANVGNSVHAR--------------------CQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW 244 (432)
Q Consensus 186 ~~~~~~~~~~v~i~d~~~~~~~~--------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lw 244 (432)
++++. |+.+++||+....... ....+ .+|...+.++ +++++++++| .|+.|++|
T Consensus 221 ~s~s~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~--~~~~~~l~~~~~d~~i~vw 295 (464)
T 3v7d_B 221 VTGSR--DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL-RGHMASVRTV--SGHGNIVVSGSYDNTLIVW 295 (464)
T ss_dssp EEEET--TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE-CCCSSCEEEE--EEETTEEEEEETTSCEEEE
T ss_pred EEEcC--CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc-cCccceEEEE--cCCCCEEEEEeCCCeEEEE
Confidence 99988 9999999998432111 24445 6788888877 5678899999 99999999
Q ss_pred eCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcccee
Q 014005 245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (432)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 324 (432)
|++ +.+.+..+ .+|...|.+++|+|++ ++|++|+.||.|++||+++++. +..+.+|
T Consensus 296 d~~-~~~~~~~~-------~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~----~~~~~~h----------- 351 (464)
T 3v7d_B 296 DVA-QMKCLYIL-------SGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGEL----MYTLQGH----------- 351 (464)
T ss_dssp ETT-TTEEEEEE-------CCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEE----EEEECCC-----------
T ss_pred ECC-CCcEEEEe-------cCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcE----EEEEeCC-----------
Confidence 999 67777766 7899999999999999 9999999999999999998876 6888887
Q ss_pred eeecceeEEEEcCCCCEEEEee-CCeEEEEec-CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeee
Q 014005 325 EIIASISDIKFANDGQHLLSRD-YMNLKVFRY-EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSA 402 (432)
Q Consensus 325 ~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 402 (432)
...|.+++|+ +.+|++++ ||.|++||+ .....+..+.. .............++++|+ ||.|.+
T Consensus 352 --~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~-dg~i~i 416 (464)
T 3v7d_B 352 --TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT----------NLSAITTFYVSDNILVSGS-ENQFNI 416 (464)
T ss_dssp --SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT----------TCCCEEEEEECSSEEEEEE-TTEEEE
T ss_pred --CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC----------CCccEEEEEeCCCEEEEec-CCeEEE
Confidence 7899999998 57888875 599999999 33333333221 1111111112222577777 899999
Q ss_pred eccC
Q 014005 403 LSAG 406 (432)
Q Consensus 403 ~~~~ 406 (432)
|+..
T Consensus 417 wd~~ 420 (464)
T 3v7d_B 417 YNLR 420 (464)
T ss_dssp EETT
T ss_pred EECC
Confidence 9943
No 74
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-32 Score=271.94 Aligned_cols=252 Identities=13% Similarity=0.174 Sum_probs=207.1
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..|.+.|++++|+|+|++|++|+.||+|+|||+.++. ......+.+|.
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-------------------------~~~~~~l~~h~------- 53 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHE------- 53 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-------------------------EEEEEEECCCS-------
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-------------------------CccceeccCCc-------
Confidence 4689999999999999999999999999999998542 23557888999
Q ss_pred hhhhhcceeEEEEEEcCC--CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC--Ccc
Q 014005 109 SLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS--FAH 184 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~ 184 (432)
+.|.+++| +++ +++|++|+.||.|++||+.+++.........+. ..|.+++|+|+ +..
T Consensus 54 -----~~V~~l~~--s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~-----------~~V~~v~~sp~~~~~~ 115 (753)
T 3jro_A 54 -----GPVWRVDW--AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS-----------ASVNSVQWAPHEYGPL 115 (753)
T ss_dssp -----SCEEEEEE--CCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-----------SCEEEEEECCGGGCSE
T ss_pred -----CceEEEEe--cCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC-----------CCeEEEEECCCCCCCE
Confidence 99999999 666 999999999999999999988755665666566 78999999999 899
Q ss_pred eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-------------CCCEEEEE-cCCeEEEEeCCCCC
Q 014005 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-------------DCETFVSA-DDLRINLWNLEISD 250 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~-~d~~i~lwd~~~~~ 250 (432)
+++++. ++.|++||++.... .....+ .+|...|.+++|+| ++..+++| .||.|++||++...
T Consensus 116 l~sgs~--dg~I~vwdl~~~~~-~~~~~~-~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~ 191 (753)
T 3jro_A 116 LLVASS--DGKVSVVEFKENGT-TSPIII-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (753)
T ss_dssp EEEEET--TSEEEEEECCSSSC-CCCEEE-ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT
T ss_pred EEEEeC--CCcEEEEEeecCCC-cceeEe-ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc
Confidence 999988 99999999985422 233344 68999999999999 58899999 99999999998433
Q ss_pred ---ceeeEeecCCCCcCCCCcceEEEEEcCC---CCcEEEEEeCCCeEEEEEcccccccc-ccceeecccccccCCccce
Q 014005 251 ---QCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFF 323 (432)
Q Consensus 251 ---~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~h~~~~~~~~~~ 323 (432)
..... +.+|...|++++|+|+ + ++|++|+.||.|++||++++.... ........|
T Consensus 192 ~~~~~~~~-------~~~h~~~V~~l~~sp~~~~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~---------- 253 (753)
T 3jro_A 192 QTYVLEST-------LEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF---------- 253 (753)
T ss_dssp TEEEEEEE-------ECCCSSCEEEEEECCCCSSS-EEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCC----------
T ss_pred ccceeeee-------ecCCCCcEEEEEeccCCCCC-CEEEEEecCCEEEEecCCCCCCcceeEEeccCCC----------
Confidence 22333 3789999999999999 7 999999999999999999864210 002222333
Q ss_pred eeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005 324 TEIIASISDIKFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 324 ~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
...|.+++|+|+|++|++| .||.|++||+
T Consensus 254 ---~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 254 ---PDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp ---SSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred ---CCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 6789999999999999997 4599999999
No 75
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.5e-31 Score=246.96 Aligned_cols=275 Identities=15% Similarity=0.200 Sum_probs=213.2
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
.++.|+||++ ++||+| .|++|+|||..+++.. ....+.+|.
T Consensus 107 y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~-------------------------~~~~~~~~~------------ 147 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVA-LDNSVYLWSASSGDIL-------------------------QLLQMEQPG------------ 147 (420)
T ss_dssp TCBCEEECTT-SEEEEE-ETTEEEEEETTTCCEE-------------------------EEEECCSTT------------
T ss_pred cceeEEECCC-CEEEEE-eCCEEEEEECCCCCEE-------------------------EEEEecCCC------------
Confidence 4678999976 577776 4899999999987632 112344666
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
..|++++| +|+|++|++|+.||.|++||+.+++.. ..+..|. ..+.++.+ ++..+++++. +
T Consensus 148 ~~V~sv~f--spdg~~lasgs~Dg~v~iWd~~~~~~~--~~~~~h~-----------~~v~~~s~--~~~~l~sgs~--d 208 (420)
T 4gga_A 148 EYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRL--RNMTSHS-----------ARVGSLSW--NSYILSSGSR--S 208 (420)
T ss_dssp CCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEE--EEECCCS-----------SCEEEEEE--ETTEEEEEET--T
T ss_pred CcEEEEEE--CCCCCEEEEEECCCeEEEEEcCCCcEE--EEEeCCC-----------CceEEEee--CCCEEEEEeC--C
Confidence 88999999 899999999999999999999988743 3344444 55555554 5678888888 9
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCc---eeeEeecCCCCcCCCCcc
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ---CFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~~ 269 (432)
+.+++||... ....+..+ .+|...+..+.++|++++++++ .|+.+++||...... .+.. ...|...
T Consensus 209 ~~i~~~d~~~--~~~~~~~~-~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~-------~~~~~~~ 278 (420)
T 4gga_A 209 GHIHHHDVRV--AEHHVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT-------FTQHQGA 278 (420)
T ss_dssp SEEEEEETTS--SSCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEE-------ECCCSSC
T ss_pred CceeEeeecc--cceeeEEe-cccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeee-------ecccCCc
Confidence 9999999874 23445566 7899999999999999999999 999999999983322 1222 3678899
Q ss_pred eEEEEEcCCCCcEEEEE--eCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe--
Q 014005 270 ITSAEFHPIYCNLLAYS--SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-- 345 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-- 345 (432)
|.+++|+|.+..+++++ +.|+.|++||+++++. ...+..| ..+.++.|+|+++.|+++
T Consensus 279 V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~----~~~~~~~--------------~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC----LSAVDAH--------------SQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp EEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE----EEEEECS--------------SCEEEEEEETTTTEEEEEEC
T ss_pred eeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc----ceeeccc--------------cceeeeeecCCCCeEEEEEe
Confidence 99999999886777765 4799999999999876 5666664 689999999999988874
Q ss_pred -eCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 346 -DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 346 -~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
.++.|+|||+ +++.++..|.. .+..+.......+++||+.|+.|++|+.
T Consensus 341 ~~d~~I~iwd~~~~~~v~~l~gH~~-----------~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 341 FAQNQLVIWKYPTMAKVAELKGHTS-----------RVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp TTTCCEEEEETTTCCEEEEECCCSS-----------CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred cCCCEEEEEECCCCcEEEEEcCCCC-----------CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 3499999999 77888887764 2222222222335899999999999993
No 76
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.9e-32 Score=252.15 Aligned_cols=273 Identities=14% Similarity=0.116 Sum_probs=201.4
Q ss_pred hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc
Q 014005 6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT 84 (432)
Q Consensus 6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (432)
..+.....|++..... ........|.+.|++++|+| ++++|++++.|+.|++||+++...
T Consensus 93 ~~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------------ 153 (383)
T 3ei3_B 93 SKGGDIILWDYDVQNK-TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI------------------ 153 (383)
T ss_dssp EBTSCEEEEETTSTTC-EEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE------------------
T ss_pred cCCCeEEEEeCCCccc-ceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce------------------
Confidence 3445566777663111 01111235899999999999 789999999999999999986431
Q ss_pred ccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccc
Q 014005 85 STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE 164 (432)
Q Consensus 85 ~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 164 (432)
.......+|. ..|.+++| +|++++|++++.|+.|++||+....... +..+.
T Consensus 154 -------~~~~~~~~~~------------~~v~~~~~--~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~h~----- 204 (383)
T 3ei3_B 154 -------QVFAKTDSWD------------YWYCCVDV--SVSRQMLATGDSTGRLLLLGLDGHEIFK---EKLHK----- 204 (383)
T ss_dssp -------EEEECCCCSS------------CCEEEEEE--ETTTTEEEEEETTSEEEEEETTSCEEEE---EECSS-----
T ss_pred -------EEEeccCCCC------------CCeEEEEE--CCCCCEEEEECCCCCEEEEECCCCEEEE---eccCC-----
Confidence 1112223344 78999999 8999999999999999999995443333 33344
Q ss_pred cccccccccccccCCCCCc-ceecceeeccceEEEEeeccccc-ceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCe
Q 014005 165 NTLLAEKNFMNEHNPPSFA-HGYHLEWTENMATKIANVGNSVH-ARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLR 240 (432)
Q Consensus 165 ~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~ 240 (432)
..|.+++|+|++. ++++++. |+.|++||++.... ..++..+ +|...|.+++|+| ++++++++ .|+.
T Consensus 205 ------~~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~ 274 (383)
T 3ei3_B 205 ------AKVTHAEFNPRCDWLMATSSV--DATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNE 274 (383)
T ss_dssp ------SCEEEEEECSSCTTEEEEEET--TSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSE
T ss_pred ------CcEEEEEECCCCCCEEEEEeC--CCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCc
Confidence 7899999999999 7888888 99999999984321 4566655 6899999999999 99999999 9999
Q ss_pred EEEEeCCCCCceeeEeecCCCCcCCCCc----------ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceee
Q 014005 241 INLWNLEISDQCFNIVDMKPSNMDDLTE----------VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL 310 (432)
Q Consensus 241 i~lwd~~~~~~~~~~~~~~~~~~~~~~~----------~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 310 (432)
|++||++ .......+.........|.. .+..++|+|++ ++ +|+.||.|++||+++++. +..+
T Consensus 275 i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~~~~----~~~l 346 (383)
T 3ei3_B 275 IRVYSSY-DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIYDANSGGL----VHQL 346 (383)
T ss_dssp EEEEETT-BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEEETTTCCE----EEEE
T ss_pred EEEEECC-CCccccccccccccccccccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEEecCCCce----eeee
Confidence 9999998 44444443222212222333 33445666665 44 667899999999998876 5777
Q ss_pred cccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 311 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 311 ~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
.+|. +...+..++|+|+|++|++|+|+.|++||+
T Consensus 347 ~~~~-----------~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~ 380 (383)
T 3ei3_B 347 RDPN-----------AAGIISLNKFSPTGDVLASGMGFNILIWNR 380 (383)
T ss_dssp CBTT-----------BCSCCCEEEECTTSSEEEEEETTEEEEEEC
T ss_pred cCCC-----------CCceEEEEEEecCccEEEEecCCcEEEEec
Confidence 7631 146777889999999999998899999997
No 77
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-31 Score=241.82 Aligned_cols=272 Identities=11% Similarity=0.125 Sum_probs=214.2
Q ss_pred hccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccc
Q 014005 7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST 86 (432)
Q Consensus 7 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (432)
.+.....|++..- +.......|.+.|++++|+|++++|++++.||.|++||+.+++..
T Consensus 52 ~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------------- 109 (369)
T 3zwl_B 52 KDSSASVWYSLNG---ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV------------------- 109 (369)
T ss_dssp SSSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE-------------------
T ss_pred CCCEEEEEeCCCc---hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-------------------
Confidence 3445566765421 112223358999999999999999999999999999999887532
Q ss_pred ccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCC-----CeEEEEEccCcceeeeeecCCCCcc
Q 014005 87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND-----KTIKLWKVRDQKVKKIKEMDHFPFV 161 (432)
Q Consensus 87 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~ 161 (432)
..+. |. ..|.+++| +|+++++++++.+ +.|++||+..+.............+
T Consensus 110 --------~~~~-~~------------~~v~~~~~--~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 110 --------ATWK-SP------------VPVKRVEF--SPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp --------EEEE-CS------------SCEEEEEE--CTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred --------EEee-cC------------CCeEEEEE--ccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 4444 66 88999999 8999999999998 9999999986642111111100101
Q ss_pred ccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe
Q 014005 162 SSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR 240 (432)
Q Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~ 240 (432)
.....+.....+.+++|++++.++++++. ++.|++||++. .......+ ..|...|.+++|+|++++|+++ .|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~ 241 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHK--DGKISKYDVSN--NYEYVDSI-DLHEKSISDMQFSPDLTYFITSSRDTN 241 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEET--TSEEEEEETTT--TTEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcC--CCEEEEEECCC--CcEeEEEE-ecCCCceeEEEECCCCCEEEEecCCce
Confidence 11111112237899999999999999888 99999999983 15677777 7899999999999999999999 9999
Q ss_pred EEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC--------------eEEEEEcccccccccc
Q 014005 241 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--------------FVRLVDMRQSALCDHS 306 (432)
Q Consensus 241 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~ 306 (432)
|++||++ .......+ . +...+..++|+|++ +++++++.++ .+++||+.+++.
T Consensus 242 i~v~d~~-~~~~~~~~-------~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---- 307 (369)
T 3zwl_B 242 SFLVDVS-TLQVLKKY-------E-TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE---- 307 (369)
T ss_dssp EEEEETT-TCCEEEEE-------E-CSSCEEEEEECSSS-SEEEEEECCC-------------CEEEEEETTTCCE----
T ss_pred EEEEECC-CCceeeee-------c-CCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc----
Confidence 9999999 56666655 2 66789999999999 9999999888 899999998876
Q ss_pred ceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005 307 ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 307 ~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~ 355 (432)
+..+.+| ...|.+++|+|+|++|++++ ||.|++||+
T Consensus 308 ~~~~~~~-------------~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 308 IGRVQGH-------------FGPLNTVAISPQGTSYASGGEDGFIRLHHF 344 (369)
T ss_dssp EEEEECC-------------SSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred hhheecc-------------cCcEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 5778886 78999999999999999985 599999999
No 78
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-32 Score=263.95 Aligned_cols=249 Identities=12% Similarity=0.028 Sum_probs=190.6
Q ss_pred ccccCCCcEEEEEEcCCC---------CEEEE-------------------ecccceEEEEEecCCcCCCCccccchhhh
Q 014005 27 EELQDVDIVSAIEFDKTG---------DYLAV-------------------GDRGGRVILFETVGGKNTPNQHISRSELE 78 (432)
Q Consensus 27 ~~~~h~~~V~~~~fsp~g---------~~l~t-------------------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 78 (432)
..+.+.+.|.+|+|+|++ ++||+ ++.|++|+||++++++..
T Consensus 128 ~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~----------- 196 (524)
T 2j04_B 128 FIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH----------- 196 (524)
T ss_dssp EEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC-----------
T ss_pred EEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC-----------
Confidence 345567889999999886 66666 457889999999876531
Q ss_pred ccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCC------CCEEEEEeCCCeEEEEEccCccee--
Q 014005 79 KQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN------GSMFILSTNDKTIKLWKVRDQKVK-- 150 (432)
Q Consensus 79 ~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~------~~~l~s~~~d~~i~iwd~~~~~~~-- 150 (432)
......+.+|. +.|.+++| +|+ +.+|++++.||+|++||+..+...
T Consensus 197 ------------~~~~~~l~~~~------------~~V~~v~w--sp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~ 250 (524)
T 2j04_B 197 ------------CVKVQTIVHSF------------GEVWDLKW--HEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH 250 (524)
T ss_dssp ------------EEEEEEEEECC------------CSEEEEEE--CSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred ------------ceEEEEEEecC------------CcEEEEEE--CCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence 11123456677 88999999 554 679999999999999999866421
Q ss_pred -------eeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeE
Q 014005 151 -------KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINS 223 (432)
Q Consensus 151 -------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~ 223 (432)
....+..+. ..+.+++|+++. .+++|+. ||.|++||++.. ..+...+ .+|...|.+
T Consensus 251 ~~~~~~~p~~~l~~h~-----------~~v~sv~~s~~~-~lasgs~--DgtV~lWD~~~~--~~~~~~~-~~H~~~V~s 313 (524)
T 2j04_B 251 VFKMCEKPSLTLSLAD-----------SLITTFDFLSPT-TVVCGFK--NGFVAEFDLTDP--EVPSFYD-QVHDSYILS 313 (524)
T ss_dssp EEECCCSCSEEECCTT-----------TCEEEEEESSSS-EEEEEET--TSEEEEEETTBC--SSCSEEE-ECSSSCEEE
T ss_pred cceeecCceEEEEcCC-----------CCEEEEEecCCC-eEEEEeC--CCEEEEEECCCC--CCceEEe-ecccccEEE
Confidence 011222333 789999999864 6888888 999999999832 1334455 789999999
Q ss_pred E--EeCCCC-CEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC--cceEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005 224 I--SNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (432)
Q Consensus 224 ~--~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~ 297 (432)
+ +|+|++ .+|++| .|++|++||++ ..++...+ .+|. ..|.+++|+|++ +.|++++.|++|++||+
T Consensus 314 v~~~~s~~g~~~laS~S~D~tvklWD~~-~~~~~~~~-------~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~ 384 (524)
T 2j04_B 314 VSTAYSDFEDTVVSTVAVDGYFYIFNPK-DIATTKTT-------VSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPS 384 (524)
T ss_dssp EEEECCTTSCCEEEEEETTSEEEEECGG-GHHHHCEE-------EEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEET
T ss_pred EEEEcCCCCCeEEEEeccCCeEEEEECC-CCCccccc-------ccccccCcccceEeCCCc-CeEEEeCCCCcEEEEEC
Confidence 9 578887 889999 99999999998 45554443 3443 247899999998 88999999999999999
Q ss_pred cccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 298 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
+++.. ...+.+| .+.|++++|+|+|++|++|++ ++|++||+
T Consensus 385 ~~~~~----~~~l~gH-------------~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 385 RAAFA----VHPLVSR-------------ETTITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp TCTTC----CEEEEEC-------------SSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred ccccc----ceeeecC-------------CCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 98765 4677787 789999999999999999854 99999998
No 79
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-31 Score=249.62 Aligned_cols=241 Identities=14% Similarity=0.176 Sum_probs=199.4
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..|.+.|++++|+|+|++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 131 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~---------------------------~~~~~~~~~------- 176 (401)
T 4aez_A 131 TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT---------------------------KLRTMAGHQ------- 176 (401)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------------------------EEEEECCCS-------
T ss_pred cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe---------------------------EEEEecCCC-------
Confidence 3478899999999999999999999999999998765 336788898
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..|.+++| + ++++++++.||.|++||+..... ....+..+. +.|.+++|+|++.+++++
T Consensus 177 -----~~v~~~~~--~--~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~-----------~~v~~~~~~~~~~~l~s~ 235 (401)
T 4aez_A 177 -----ARVGCLSW--N--RHVLSSGSRSGAIHHHDVRIANH-QIGTLQGHS-----------SEVCGLAWRSDGLQLASG 235 (401)
T ss_dssp -----SCEEEEEE--E--TTEEEEEETTSEEEEEETTSSSC-EEEEEECCS-----------SCEEEEEECTTSSEEEEE
T ss_pred -----CceEEEEE--C--CCEEEEEcCCCCEEEEecccCcc-eeeEEcCCC-----------CCeeEEEEcCCCCEEEEE
Confidence 99999999 3 57999999999999999984331 222233344 789999999999999999
Q ss_pred eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCE-EEEE---cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA---DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~---~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (432)
+. |+.|++||++ ...+...+ ..|...|.+++|+|++.. ++++ .|+.|++||++ .+..+..+
T Consensus 236 ~~--d~~v~iwd~~---~~~~~~~~-~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~-~~~~~~~~-------- 300 (401)
T 4aez_A 236 GN--DNVVQIWDAR---SSIPKFTK-TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA-TGARVNTV-------- 300 (401)
T ss_dssp ET--TSCEEEEETT---CSSEEEEE-CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT-TCCEEEEE--------
T ss_pred eC--CCeEEEccCC---CCCccEEe-cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC-CCCEEEEE--------
Confidence 98 9999999998 66777777 789999999999997654 4453 49999999999 66666654
Q ss_pred CCCcceEEEEEcCCCCcEEEEEe--CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005 265 DLTEVITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (432)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 342 (432)
.+...|++++|+|++ +.|++++ .||.|++||+++++... ...+.+| ...|.+++|+|+|++|
T Consensus 301 ~~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~~~~~~~~~--~~~~~~h-------------~~~v~~~~~s~dg~~l 364 (401)
T 4aez_A 301 DAGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWSYSSSGLTK--QVDIPAH-------------DTRVLYSALSPDGRIL 364 (401)
T ss_dssp ECSSCEEEEEECSSS-SEEEEEECTTTCEEEEEEEETTEEEE--EEEEECC-------------SSCCCEEEECTTSSEE
T ss_pred eCCCcEEEEEECCCC-CeEEEEeecCCCcEEEEecCCcccee--EEEecCC-------------CCCEEEEEECCCCCEE
Confidence 345679999999999 8888844 89999999999865421 2335565 7899999999999999
Q ss_pred EEee-CCeEEEEec
Q 014005 343 LSRD-YMNLKVFRY 355 (432)
Q Consensus 343 ~s~~-~~~i~iwd~ 355 (432)
++++ ||.|++||+
T Consensus 365 ~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 365 STAASDENLKFWRV 378 (401)
T ss_dssp EEECTTSEEEEEEC
T ss_pred EEEeCCCcEEEEEC
Confidence 9975 599999999
No 80
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.3e-32 Score=249.73 Aligned_cols=251 Identities=12% Similarity=0.119 Sum_probs=183.6
Q ss_pred ccCCCcEEEEEEcCCCCEEEE-----------ecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeee
Q 014005 29 LQDVDIVSAIEFDKTGDYLAV-----------GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF 97 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t-----------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 97 (432)
-.|.+.|++++++ ++.+++ |+.|+++|+|+++..... .+.....
T Consensus 70 ~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~-----------------------~~~~~~~ 124 (365)
T 4h5i_A 70 EDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQ-----------------------LEFLTSV 124 (365)
T ss_dssp CTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTE-----------------------EEEEEEE
T ss_pred cCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCce-----------------------EEEeeee
Confidence 3577888888775 445554 456788999998775421 0111111
Q ss_pred ecCCccccccchhhhhcceeEEEEEEcCCCCEEEEE--eCCCeEEEEEccCcceeeeeecCCCCcccccccccccccccc
Q 014005 98 QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (432)
Q Consensus 98 ~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (432)
+... ....+..+.+++| +|||++++++ +.|++|++||+.+++......+ . +.|.+
T Consensus 125 ~~~~-------~~~~~~~~~~v~f--SpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~---~-----------~~V~~ 181 (365)
T 4h5i_A 125 DFDA-------STNADDYTKLVYI--SREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET---R-----------GEVKD 181 (365)
T ss_dssp CSSC-------CCCTTCCEEEEEE--CTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC---S-----------SCCCE
T ss_pred ceee-------cCCcccCEEEEEE--cCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC---C-----------CceEE
Confidence 1110 0011166889999 9999998765 4789999999998875544332 2 67999
Q ss_pred ccCCCCCcceecceeeccceEEEEeecccccceeeE-EeecCCCCCeeEEEeCCCCCEEEEE-cCC----eEEEEeCCCC
Q 014005 176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQK-VYPHAHDFNINSISNNSDCETFVSA-DDL----RINLWNLEIS 249 (432)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~-~d~----~i~lwd~~~~ 249 (432)
++|+|++.++++++. +.+.+|+.. .+.... .....|...|.+++|+|+++.++++ .|+ .+++|++...
T Consensus 182 v~fspdg~~l~s~s~---~~~~~~~~~---~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~ 255 (365)
T 4h5i_A 182 LHFSTDGKVVAYITG---SSLEVISTV---TGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSG 255 (365)
T ss_dssp EEECTTSSEEEEECS---SCEEEEETT---TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETT
T ss_pred EEEccCCceEEeccc---eeEEEEEec---cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccc
Confidence 999999999998874 455666655 333332 2225788899999999999999988 666 6888988732
Q ss_pred CceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccccee-ecccccccCCccceeeeec
Q 014005 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIA 328 (432)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~h~~~~~~~~~~~~~~~ 328 (432)
...... ...+.+|...|++++|+|++ ++||+|+.|++|+|||+++++. +.. +.+| ..
T Consensus 256 ~~~~~~----~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~~----~~~~~~gH-------------~~ 313 (365)
T 4h5i_A 256 NTSVLR----SKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLSM----SKIFKQAH-------------SF 313 (365)
T ss_dssp EEEEEE----EEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEE----EEEETTSS-------------SS
T ss_pred eeccee----eeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCcE----EEEecCcc-------------cC
Confidence 221110 01237888999999999999 9999999999999999999886 455 4677 88
Q ss_pred ceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 329 SISDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 329 ~v~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
+|++++|||||++||||+. ++|+|||+
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 9999999999999999855 99999999
No 81
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.7e-31 Score=248.62 Aligned_cols=241 Identities=17% Similarity=0.255 Sum_probs=198.8
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
.|.+.|+||+|+|+|++||+|+.||+|+|||+++++ .+..+.+|.
T Consensus 145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~---------------------------~~~~~~~h~-------- 189 (420)
T 4gga_A 145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---------------------------RLRNMTSHS-------- 189 (420)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS--------
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc---------------------------EEEEEeCCC--------
Confidence 578899999999999999999999999999998876 347888999
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
..+.+++| ++..+++|+.|+.+++||...... .+..+..+. ..+..+.+++++.++++++
T Consensus 190 ----~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~-~~~~~~~h~-----------~~~~~~~~~~~g~~l~s~~ 249 (420)
T 4gga_A 190 ----ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEH-HVATLSGHS-----------QEVCGLRWAPDGRHLASGG 249 (420)
T ss_dssp ----SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSC-EEEEEECCS-----------SCEEEEEECTTSSEEEEEE
T ss_pred ----CceEEEee----CCCEEEEEeCCCceeEeeecccce-eeEEecccc-----------cceeeeeecCCCCeeeeee
Confidence 88998888 467999999999999999876542 223333444 6788899999999999999
Q ss_pred eeccceEEEEeecccc-cceeeEEeecCCCCCeeEEEeCCCCC-EEEE--E-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005 190 WTENMATKIANVGNSV-HARCQKVYPHAHDFNINSISNNSDCE-TFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~--~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (432)
. |+.+++|+..... ....+... ..|...|.+++|+|.+. .+++ | .|++|++||++ ++.+...+ .
T Consensus 250 ~--D~~v~i~~~~~~~~~~~~~~~~-~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~-t~~~~~~~-------~ 318 (420)
T 4gga_A 250 N--DNLVNVWPSAPGEGGWVPLQTF-TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC-SGACLSAV-------D 318 (420)
T ss_dssp T--TSCEEEEESSCCSSCSCCSEEE-CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT-TTEEEEEE-------E
T ss_pred c--cccceEEeeccccccceeeeee-cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC-ccccceee-------c
Confidence 8 9999999987432 22234455 78899999999999755 4444 4 69999999999 67766655 3
Q ss_pred CCCcceEEEEEcCCCCcEEEEEe--CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005 265 DLTEVITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (432)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 342 (432)
+...+.++.|+|++ +.+++++ .|+.|+|||+++++. +..+.+| .+.|.+++|+|||++|
T Consensus 319 -~~~~v~~~~~~~~~-~~lv~~sg~~d~~I~iwd~~~~~~----v~~l~gH-------------~~~V~~l~~spdg~~l 379 (420)
T 4gga_A 319 -AHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAK----VAELKGH-------------TSRVLSLTMSPDGATV 379 (420)
T ss_dssp -CSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCCE----EEEECCC-------------SSCEEEEEECTTSSCE
T ss_pred -cccceeeeeecCCC-CeEEEEEecCCCEEEEEECCCCcE----EEEEcCC-------------CCCEEEEEEcCCCCEE
Confidence 33568999999998 7676654 799999999999886 6889998 8899999999999999
Q ss_pred EEee-CCeEEEEec
Q 014005 343 LSRD-YMNLKVFRY 355 (432)
Q Consensus 343 ~s~~-~~~i~iwd~ 355 (432)
+||+ |++|+|||+
T Consensus 380 ~S~s~D~tvriWdv 393 (420)
T 4gga_A 380 ASAAADETLRLWRC 393 (420)
T ss_dssp EEEETTTEEEEECC
T ss_pred EEEecCCeEEEEEC
Confidence 9974 599999999
No 82
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.5e-31 Score=244.45 Aligned_cols=262 Identities=10% Similarity=0.066 Sum_probs=203.3
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..|.+.|++++|+|++++|++++.||.|++||+++++.. ....+..|.
T Consensus 49 ~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------------------------~~~~~~~~~------- 96 (372)
T 1k8k_C 49 KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK-------------------------PTLVILRIN------- 96 (372)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE-------------------------EEEECCCCS-------
T ss_pred cCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee-------------------------eeEEeecCC-------
Confidence 368899999999999999999999999999999876421 223446677
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceee-eee-cCCCCccccccccccccccccccCCCCCccee
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK-IKE-MDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
..|.+++| +|++++|++++.|+.|++||+..+.... ... ...+. ..+.+++|+|++.+++
T Consensus 97 -----~~v~~~~~--~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~-----------~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 97 -----RAARCVRW--APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR-----------STVLSLDWHPNSVLLA 158 (372)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC-----------SCEEEEEECTTSSEEE
T ss_pred -----CceeEEEE--CCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccC-----------CCeeEEEEcCCCCEEE
Confidence 89999999 8999999999999999999998775211 111 12233 7899999999999999
Q ss_pred cceeeccceEEEEeecc---------------cccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC
Q 014005 187 HLEWTENMATKIANVGN---------------SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD 250 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~---------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~ 250 (432)
+++. ++.+++||++. ....+++..+ ..|...|.+++|+|++++++++ .|+.|++||++ .+
T Consensus 159 ~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~ 234 (372)
T 1k8k_C 159 AGSC--DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD-KK 234 (372)
T ss_dssp EEET--TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG-GT
T ss_pred EEcC--CCCEEEEEcccccccccccccccccccchhhheEec-CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC-CC
Confidence 9988 99999999642 1145677777 7899999999999999999999 99999999999 56
Q ss_pred ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccc--cccccccceeecccc--------------
Q 014005 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ--SALCDHSARILRDAA-------------- 314 (432)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~h~-------------- 314 (432)
+.+..+ ..|...|.+++|+|++ .+|++| .|+.|++||+++ ++... ...+..+.
T Consensus 235 ~~~~~~-------~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 303 (372)
T 1k8k_C 235 MAVATL-------ASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGKLSF--GGRLDVPKQSSQRGLTARERFQ 303 (372)
T ss_dssp TEEEEE-------ECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTEEEE--CCCCCCC--------CHHHHHH
T ss_pred ceeEEE-------ccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccCcCceEEE--eeccCccccchhhhcchhhhhh
Confidence 677665 6788899999999998 888877 899999999987 43100 11110000
Q ss_pred --c--c-----cCC-ccceeeeecceeEEEEc-CCC---CEEEEee-CCeEEEEec
Q 014005 315 --E--S-----HGS-KSFFTEIIASISDIKFA-NDG---QHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 315 --~--~-----~~~-~~~~~~~~~~v~~~~~s-~dg---~~l~s~~-~~~i~iwd~ 355 (432)
. . |.. .....+|...|++++|+ ++| .+|++|+ ||.|++||+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 304 NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 359 (372)
T ss_dssp HCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred hcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence 0 0 000 11113458899999966 677 9999975 599999999
No 83
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-32 Score=257.49 Aligned_cols=289 Identities=9% Similarity=0.003 Sum_probs=203.8
Q ss_pred hhccccchhhhhhhhcCCCC---CccccCCCcEEEEEEcCC------CCEEEEecccceEEEEEecCCcCCCCccccchh
Q 014005 6 EEASASLEWKCSQAFGERNP---DEELQDVDIVSAIEFDKT------GDYLAVGDRGGRVILFETVGGKNTPNQHISRSE 76 (432)
Q Consensus 6 ~~~~~~~~w~~~~~~~~~~~---~~~~~h~~~V~~~~fsp~------g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~ 76 (432)
..+.....|++.. ++... .....|.+.|++++|+|+ +.+||+|+.||+|+|||+.+++.... . .
T Consensus 180 s~D~tI~iWd~~~--~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~----~-~ 252 (524)
T 2j04_B 180 KHSSCIQIFKMNT--STLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH----V-F 252 (524)
T ss_dssp --CEEEEEEEEET--TTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS----E-E
T ss_pred CCCceEEEEEccC--CCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc----c-c
Confidence 3445566787643 11100 112346789999999997 57999999999999999987542100 0 0
Q ss_pred hhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecC
Q 014005 77 LEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD 156 (432)
Q Consensus 77 ~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 156 (432)
.. .......+.+|. ..|.+++| +++ ..|++|+.||+|++||+.++... ...+.
T Consensus 253 ----------~~-~~~p~~~l~~h~------------~~v~sv~~--s~~-~~lasgs~DgtV~lWD~~~~~~~-~~~~~ 305 (524)
T 2j04_B 253 ----------KM-CEKPSLTLSLAD------------SLITTFDF--LSP-TTVVCGFKNGFVAEFDLTDPEVP-SFYDQ 305 (524)
T ss_dssp ----------EC-CCSCSEEECCTT------------TCEEEEEE--SSS-SEEEEEETTSEEEEEETTBCSSC-SEEEE
T ss_pred ----------ee-ecCceEEEEcCC------------CCEEEEEe--cCC-CeEEEEeCCCEEEEEECCCCCCc-eEEee
Confidence 00 011224677888 99999999 665 48999999999999999876321 11233
Q ss_pred CCCccccccccccccccccc--cCCCCC-cceecceeeccceEEEEeecccccceeeEEeecCCC--CCeeEEEeCCCCC
Q 014005 157 HFPFVSSENTLLAEKNFMNE--HNPPSF-AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHD--FNINSISNNSDCE 231 (432)
Q Consensus 157 ~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~ 231 (432)
.|. ..|.++ +|++++ .++++++. |+++++||++ ..++...+ .+|. ..|.+++|+|+++
T Consensus 306 ~H~-----------~~V~sv~~~~s~~g~~~laS~S~--D~tvklWD~~---~~~~~~~~-~~~~~~~~v~~v~fsp~~~ 368 (524)
T 2j04_B 306 VHD-----------SYILSVSTAYSDFEDTVVSTVAV--DGYFYIFNPK---DIATTKTT-VSRFRGSNLVPVVYCPQIY 368 (524)
T ss_dssp CSS-----------SCEEEEEEECCTTSCCEEEEEET--TSEEEEECGG---GHHHHCEE-EEECSCCSCCCEEEETTTT
T ss_pred ccc-----------ccEEEEEEEcCCCCCeEEEEecc--CCeEEEEECC---CCCccccc-ccccccCcccceEeCCCcC
Confidence 344 788888 688887 88899998 9999999998 55555555 3443 3588999999999
Q ss_pred EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccc----
Q 014005 232 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS---- 306 (432)
Q Consensus 232 ~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---- 306 (432)
.++++ .|++|++||++ ...+...+ .+|.+.|++++|+|++ ++|++|+.||+|++||+..+......
T Consensus 369 ~l~s~~~d~tv~lwd~~-~~~~~~~l-------~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~ 439 (524)
T 2j04_B 369 SYIYSDGASSLRAVPSR-AAFAVHPL-------VSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARRLLHGIKNSSA 439 (524)
T ss_dssp EEEEECSSSEEEEEETT-CTTCCEEE-------EECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSSTTTCC-----
T ss_pred eEEEeCCCCcEEEEECc-ccccceee-------ecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHhhccccccCcc
Confidence 99999 99999999999 56665555 7899999999999999 89999999999999997643211000
Q ss_pred ----ceeecccccccC--------------------CccceeeeecceeEEEEcCCCC---EEEEeeC-CeEEEEec
Q 014005 307 ----ARILRDAAESHG--------------------SKSFFTEIIASISDIKFANDGQ---HLLSRDY-MNLKVFRY 355 (432)
Q Consensus 307 ----~~~~~~h~~~~~--------------------~~~~~~~~~~~v~~~~~s~dg~---~l~s~~~-~~i~iwd~ 355 (432)
...+.- ..++. ....+.+|...|.+++|+|++. +||+|+. |.|+||++
T Consensus 440 ~~~~~~v~~v-~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l 515 (524)
T 2j04_B 440 TQKSLRLWKW-DYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYL 515 (524)
T ss_dssp -CCCCEEEEC-BCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred ceeeeEEEEe-ccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEc
Confidence 000011 11111 1134566888999999999954 9999866 99999998
No 84
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.3e-31 Score=248.63 Aligned_cols=278 Identities=12% Similarity=0.130 Sum_probs=213.3
Q ss_pred hhccccchhhhhhhhcC-CCCCccccCCCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccc
Q 014005 6 EEASASLEWKCSQAFGE-RNPDEELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF 83 (432)
Q Consensus 6 ~~~~~~~~w~~~~~~~~-~~~~~~~~h~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 83 (432)
..+.....|.+.+.-.. ........|.+.|++++|+| ++++|++|+.||+|+|||+.++....
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~--------------- 118 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL--------------- 118 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS---------------
T ss_pred cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc---------------
Confidence 34455667776542111 12223446999999999999 99999999999999999998864220
Q ss_pred cccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCC-CEEEEEeCCCeEEEEEccCcceeeeeecCCCCccc
Q 014005 84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS 162 (432)
Q Consensus 84 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 162 (432)
........+.+|. ..|.+++| +|++ .+|++++.|+.|++||+.+++.........+.
T Consensus 119 -----~~~~~~~~~~~h~------------~~v~~~~~--~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--- 176 (402)
T 2aq5_A 119 -----PLREPVITLEGHT------------KRVGIVAW--HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP--- 176 (402)
T ss_dssp -----CBCSCSEEEECCS------------SCEEEEEE--CSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCC---
T ss_pred -----ccCCceEEecCCC------------CeEEEEEE--CcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCC---
Confidence 0112446788999 99999999 8897 69999999999999999988744333213444
Q ss_pred cccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCC-eeEEEeCCCCCEEEEE----c
Q 014005 163 SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFN-INSISNNSDCETFVSA----D 237 (432)
Q Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~----~ 237 (432)
..+.+++|+|++.++++++. |+.+++||++ ..+++..+...|.+. +.+++|+|+++++++| .
T Consensus 177 --------~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~ 243 (402)
T 2aq5_A 177 --------DTIYSVDWSRDGALICTSCR--DKRVRVIEPR---KGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS 243 (402)
T ss_dssp --------SCEEEEEECTTSSCEEEEET--TSEEEEEETT---TTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTC
T ss_pred --------CceEEEEECCCCCEEEEEec--CCcEEEEeCC---CCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCC
Confidence 78999999999999999998 9999999998 667777663466665 8999999999999987 6
Q ss_pred CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEE-EEeCCCeEEEEEccccccccccceeecccccc
Q 014005 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAES 316 (432)
Q Consensus 238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~ 316 (432)
|+.|++||++......... ...+...+.+++|+|++ ++|+ +|+.||.|++||+++++.. +..+..|.
T Consensus 244 d~~i~iwd~~~~~~~~~~~------~~~~~~~v~~~~~s~~~-~~l~~~g~~dg~i~i~d~~~~~~~---~~~l~~~~-- 311 (402)
T 2aq5_A 244 ERQVALWDTKHLEEPLSLQ------ELDTSSGVLLPFFDPDT-NIVYLCGKGDSSIRYFEITSEAPF---LHYLSMFS-- 311 (402)
T ss_dssp CEEEEEEETTBCSSCSEEE------ECCCCSSCEEEEEETTT-TEEEEEETTCSCEEEEEECSSTTC---EEEEEEEC--
T ss_pred CceEEEEcCccccCCceEE------eccCCCceeEEEEcCCC-CEEEEEEcCCCeEEEEEecCCCcc---eEeecccc--
Confidence 8999999999444333332 13566779999999999 7775 5557999999999987742 23443320
Q ss_pred cCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 317 HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
+...|.+++|+|++.++++++ +.+++|++
T Consensus 312 ---------~~~~v~~~~~sp~~~~~~s~~-~~~~~~~l 340 (402)
T 2aq5_A 312 ---------SKESQRGMGYMPKRGLEVNKC-EIARFYKL 340 (402)
T ss_dssp ---------CSSCCSEEEECCGGGSCGGGT-EEEEEEEE
T ss_pred ---------cCCcccceEEecccccceecc-eeEEEEEc
Confidence 147899999999999988644 69999999
No 85
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=9.1e-31 Score=238.56 Aligned_cols=275 Identities=16% Similarity=0.251 Sum_probs=206.0
Q ss_pred cchhhccccchhhhhhhhcCC--CCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcc
Q 014005 3 LNREEASASLEWKCSQAFGER--NPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQ 80 (432)
Q Consensus 3 ~~~~~~~~~~~w~~~~~~~~~--~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 80 (432)
+++..+.....|++....... .......|.+.|++++|+|+|++|++|+.|+.|++|+......
T Consensus 55 ~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~-------------- 120 (340)
T 4aow_A 55 LSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT-------------- 120 (340)
T ss_dssp EEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--------------
T ss_pred EEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccce--------------
Confidence 344555667788876421111 1112346899999999999999999999999999999877642
Q ss_pred ccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCc
Q 014005 81 MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF 160 (432)
Q Consensus 81 ~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 160 (432)
......+. ..+..+.+ ++++.+|++++.|+.+++||+...... ......+.
T Consensus 121 -------------~~~~~~~~------------~~~~~~~~--~~~~~~l~s~s~d~~~~~~d~~~~~~~-~~~~~~~~- 171 (340)
T 4aow_A 121 -------------TRRFVGHT------------KDVLSVAF--SSDNRQIVSGSRDKTIKLWNTLGVCKY-TVQDESHS- 171 (340)
T ss_dssp -------------EEEEECCS------------SCEEEEEE--CTTSSCEEEEETTSCEEEECTTSCEEE-EECSSSCS-
T ss_pred -------------eeeecCCC------------CceeEEEE--eecCccceeecCCCeEEEEEeCCCceE-EEEecccc-
Confidence 24455555 67788888 899999999999999999998765432 22233333
Q ss_pred cccccccccccccccccCCCCCc--ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c
Q 014005 161 VSSENTLLAEKNFMNEHNPPSFA--HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D 237 (432)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~ 237 (432)
..+..++|+++.. .+++++. ++.+++||++ ..++...+ .+|.+.|++++|+|++++|++| .
T Consensus 172 ----------~~v~~~~~~~~~~~~~~~s~~~--d~~i~i~d~~---~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 172 ----------EWVSCVRFSPNSSNPIIVSCGW--DKLVKVWNLA---NCKLKTNH-IGHTGYLNTVTVSPDGSLCASGGK 235 (340)
T ss_dssp ----------SCEEEEEECSCSSSCEEEEEET--TSCEEEEETT---TTEEEEEE-CCCSSCEEEEEECTTSSEEEEEET
T ss_pred ----------CcccceEEccCCCCcEEEEEcC--CCEEEEEECC---CCceeeEe-cCCCCcEEEEEECCCCCEEEEEeC
Confidence 5677777777654 4555655 9999999998 77788888 8999999999999999999999 9
Q ss_pred CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccccc
Q 014005 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH 317 (432)
Q Consensus 238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~ 317 (432)
|+.|++||++ ....+..+ . +...|.+++|+|++ .+ ++++.|+.|++||++++.. ...+..+.
T Consensus 236 Dg~i~iwd~~-~~~~~~~~-------~-~~~~v~~~~~~~~~-~~-~~~~~d~~i~iwd~~~~~~----~~~~~~~~--- 297 (340)
T 4aow_A 236 DGQAMLWDLN-EGKHLYTL-------D-GGDIINALCFSPNR-YW-LCAATGPSIKIWDLEGKII----VDELKQEV--- 297 (340)
T ss_dssp TCEEEEEETT-TTEEEEEE-------E-CSSCEEEEEECSSS-SE-EEEEETTEEEEEETTTTEE----EEEECCC----
T ss_pred CCeEEEEEec-cCceeeee-------c-CCceEEeeecCCCC-ce-eeccCCCEEEEEECCCCeE----EEeccccc---
Confidence 9999999999 56666654 3 34579999999987 55 4566799999999987654 23333210
Q ss_pred CCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005 318 GSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~ 355 (432)
.......|...|++++|+|||++|++|+ ||.|+|||+
T Consensus 298 -~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 298 -ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp -------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred -eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 0011223478999999999999999975 599999998
No 86
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.9e-32 Score=256.46 Aligned_cols=274 Identities=13% Similarity=0.141 Sum_probs=195.8
Q ss_pred hhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccc
Q 014005 5 REEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF 83 (432)
Q Consensus 5 ~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 83 (432)
+..+.....|++... ..........|.+.|++|+|+| ++++|++|+.||+|+|||++++..
T Consensus 138 Gs~dg~i~lWd~~~~-~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~----------------- 199 (435)
T 4e54_B 138 GSKGGDIMLWNFGIK-DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL----------------- 199 (435)
T ss_dssp EETTSCEEEECSSCC-SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE-----------------
T ss_pred EeCCCEEEEEECCCC-CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce-----------------
Confidence 345566777876531 1111223457999999999998 689999999999999999976532
Q ss_pred cccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccc
Q 014005 84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS 163 (432)
Q Consensus 84 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 163 (432)
..+..+.. ....+.+++| ++++.+|++|+.||.|++||+.+..+. .+..|.
T Consensus 200 -----------~~~~~~~~---------~~~~~~~~~~--~~~~~~l~~g~~dg~i~~wd~~~~~~~---~~~~h~---- 250 (435)
T 4e54_B 200 -----------RVFASSDT---------INIWFCSLDV--SASSRMVVTGDNVGNVILLNMDGKELW---NLRMHK---- 250 (435)
T ss_dssp -----------EEEECCSS---------CSCCCCCEEE--ETTTTEEEEECSSSBEEEEESSSCBCC---CSBCCS----
T ss_pred -----------eEEeccCC---------CCccEEEEEE--CCCCCEEEEEeCCCcEeeeccCcceeE---EEeccc----
Confidence 12222210 0056788999 899999999999999999999765433 334444
Q ss_pred ccccccccccccccCCCCCc-ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeE
Q 014005 164 ENTLLAEKNFMNEHNPPSFA-HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRI 241 (432)
Q Consensus 164 ~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i 241 (432)
..|.+++|+|++. ++++++. |+.|++||++........... .+|...|++++|+|++++|+++ .|+.|
T Consensus 251 -------~~v~~v~~~p~~~~~~~s~s~--d~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~spdg~~l~s~~~D~~i 320 (435)
T 4e54_B 251 -------KKVTHVALNPCCDWFLATASV--DQTVKIWDLRQVRGKASFLYS-LPHRHPVNAACFSPDGARLLTTDQKSEI 320 (435)
T ss_dssp -------SCEEEEEECTTCSSEEEEEET--TSBCCEEETTTCCSSSCCSBC-CBCSSCEEECCBCTTSSEEEEEESSSCE
T ss_pred -------ceEEeeeecCCCceEEEEecC--cceeeEEecccccccceEEEe-eeccccccceeECCCCCeeEEEcCCCEE
Confidence 7899999999976 5667777 999999999854222222222 5789999999999999999999 99999
Q ss_pred EEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe------------CCCeEEEEEcccccccccccee
Q 014005 242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS------------SRGFVRLVDMRQSALCDHSARI 309 (432)
Q Consensus 242 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~ 309 (432)
++||++ .+.....+......... ...+....|+|++ .+++++. .++.|++||..+++. +..
T Consensus 321 ~iwd~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~----~~~ 393 (435)
T 4e54_B 321 RVYSAS-QWDCPLGLIPHPHRHFQ-HLTPIKAAWHPRY-NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM----MCQ 393 (435)
T ss_dssp EEEESS-SSSSEEEECCCCCCCCS-SSCCCBCEECSSS-SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE----EEE
T ss_pred EEEECC-CCccceEEecccccccc-cceeEEEEEcCCC-CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE----EEE
Confidence 999999 44444433111111111 1123345677776 5555554 345799999999876 444
Q ss_pred ec-ccccccCCccceeeeecceeEE-EEcCCCCEEEEeeCCeEEEEec
Q 014005 310 LR-DAAESHGSKSFFTEIIASISDI-KFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 310 ~~-~h~~~~~~~~~~~~~~~~v~~~-~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
+. +| ...|.++ +|+|+|++|++|+++.|+|||+
T Consensus 394 l~~~~-------------~~~v~s~~~fspdg~~lasg~d~~i~iW~~ 428 (435)
T 4e54_B 394 LYDPE-------------SSGISSLNEFNPMGDTLASAMGYHILIWSQ 428 (435)
T ss_dssp ECCSS-------------CCCCCCEEEECTTSSCEEEECSSEEEECCC
T ss_pred EeCCC-------------CCcEEEEEEECCCCCEEEEEcCCcEEEEEC
Confidence 43 44 6778877 6999999999998899999998
No 87
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.2e-30 Score=262.97 Aligned_cols=176 Identities=10% Similarity=0.094 Sum_probs=138.2
Q ss_pred hccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccc
Q 014005 7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST 86 (432)
Q Consensus 7 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (432)
.+.....|..... .....+.|...|++++|+| |++|++++.|++|+|||+++++..
T Consensus 37 ~Dg~I~lw~~~~~----~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~------------------- 92 (902)
T 2oaj_A 37 VTGEVHIYGQQQV----EVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVL------------------- 92 (902)
T ss_dssp TTSEEEEECSTTC----EEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEE-------------------
T ss_pred CCCEEEEEeCCCc----EEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEE-------------------
Confidence 3445556654321 1122345788999999999 889999999999999999886532
Q ss_pred ccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeee---------eecCC
Q 014005 87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI---------KEMDH 157 (432)
Q Consensus 87 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~---------~~~~~ 157 (432)
..+. |. ..|++++| +|+++++++|+.||.|++||+.++++... .....
T Consensus 93 --------~~~~-~~------------~~V~~v~~--sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~ 149 (902)
T 2oaj_A 93 --------TTVF-VP------------GKITSIDT--DASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAA 149 (902)
T ss_dssp --------EEEE-CS------------SCEEEEEC--CTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSS
T ss_pred --------EEEc-CC------------CCEEEEEE--CCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccccc
Confidence 4443 55 78999999 89999999999999999999998765321 11223
Q ss_pred CCccccccccccccccccccCCCC-CcceecceeeccceEEEEeecccccceeeEEeecCC------------------C
Q 014005 158 FPFVSSENTLLAEKNFMNEHNPPS-FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAH------------------D 218 (432)
Q Consensus 158 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~------------------~ 218 (432)
|. +.|.+++|+|+ ...++++.. ++.+ +||++ ..++++.+ ..| .
T Consensus 150 h~-----------~~V~sl~~sp~~~~~l~~g~~--dg~v-lWd~~---~~~~~~~~-~~~~~~g~~~~~~~~~~~~~h~ 211 (902)
T 2oaj_A 150 RL-----------SPIVSIQWNPRDIGTVLISYE--YVTL-TYSLV---ENEIKQSF-IYELPPFAPGGDFSEKTNEKRT 211 (902)
T ss_dssp CC-----------CCCCEEEEETTEEEEEEEECS--SCEE-EEETT---TTEEEEEE-CCCBCTTCCCSTTCCCTTSCBC
T ss_pred CC-----------CCeEEEEEccCCCCEEEEEeC--CCcE-EEECC---CCceEEEE-ecccCCcCCCcccccccccccC
Confidence 33 78999999996 467777777 9999 99998 66777776 433 5
Q ss_pred CCeeEEEeCCCCCEEEEE-cCCeEEEEeCC
Q 014005 219 FNINSISNNSDCETFVSA-DDLRINLWNLE 247 (432)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~ 247 (432)
..|++++|+|+|++|++| .|++|++||++
T Consensus 212 ~~V~~v~fspdg~~lasgs~Dg~i~lWd~~ 241 (902)
T 2oaj_A 212 PKVIQSLYHPNSLHIITIHEDNSLVFWDAN 241 (902)
T ss_dssp CCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 779999999999999999 99999999997
No 88
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=2.4e-30 Score=238.22 Aligned_cols=295 Identities=14% Similarity=0.112 Sum_probs=211.3
Q ss_pred ccCCCcEEEEEEcCC---CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 29 LQDVDIVSAIEFDKT---GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~---g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
..|.+.|++++|+|+ |++|++|+.||.|+|||+++... .....+.+|.
T Consensus 36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-------------------------~~~~~~~~h~---- 86 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-------------------------TIPKAQQMHT---- 86 (368)
T ss_dssp SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-------------------------EEEEEEEECS----
T ss_pred cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-------------------------eeEEEecccc----
Confidence 368999999999999 69999999999999999987321 1235678898
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccC--CCCCc
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN--PPSFA 183 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~ 183 (432)
..|.+++| +|++++|++++.||.|++||+.+++...... +. ..+.+++| ++++.
T Consensus 87 --------~~v~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~-----------~~v~~~~~~~~~~~~ 142 (368)
T 3mmy_A 87 --------GPVLDVCW--SDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ---HD-----------APVKTIHWIKAPNYS 142 (368)
T ss_dssp --------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CS-----------SCEEEEEEEECSSCE
T ss_pred --------CCEEEEEE--CcCCCEEEEEcCCCcEEEEEcCCCCceeecc---cc-----------CceEEEEEEeCCCCC
Confidence 99999999 8999999999999999999999887655443 23 78999999 99999
Q ss_pred ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC
Q 014005 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (432)
Q Consensus 184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~ 262 (432)
++++++. |+.+++||++ ..+++..+ ..+ ..+.++.+.+ ..++++ .++.+.+|+++.........
T Consensus 143 ~l~~~~~--dg~i~vwd~~---~~~~~~~~-~~~-~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~------ 207 (368)
T 3mmy_A 143 CVMTGSW--DKTLKFWDTR---SSNPMMVL-QLP-ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRI------ 207 (368)
T ss_dssp EEEEEET--TSEEEEECSS---CSSCSEEE-ECS-SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEEC------
T ss_pred EEEEccC--CCcEEEEECC---CCcEEEEE-ecC-CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhc------
Confidence 9999998 9999999998 56666666 333 3566666654 467777 99999999999444433332
Q ss_pred cCCCCcceEEEEEcCCC---CcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC
Q 014005 263 MDDLTEVITSAEFHPIY---CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (432)
Q Consensus 263 ~~~~~~~v~~~~~~p~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg 339 (432)
...+...+.++.+.++. +..+++++.||.|++||++.... ......+..|... ........+...|.+++|+|+|
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~ 285 (368)
T 3mmy_A 208 ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP-AKDNFTFKCHRSN-GTNTSAPQDIYAVNGIAFHPVH 285 (368)
T ss_dssp CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH-HHHSEEEECSEEC-----CCCEEECCEEEEEECTTT
T ss_pred cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc-cccceeeeeeecc-cccccccccccceEEEEEecCC
Confidence 12333445666665544 12399999999999999987632 0114667775111 1111112233479999999999
Q ss_pred CEEEEee-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005 340 QHLLSRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS 404 (432)
Q Consensus 340 ~~l~s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 404 (432)
++|++|+ ||.|++||+ +++..+..|.. .+..+.......++++|+.|+....|+
T Consensus 286 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 286 GTLATVGSDGRFSFWDKDARTKLKTSEQLDQ-----------PISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp CCEEEEETTSCEEEEETTTTEEEEECCCCSS-----------CEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred CEEEEEccCCeEEEEECCCCcEEEEecCCCC-----------CceEEEECCCCCeEEEEeccccccccc
Confidence 9999975 599999999 45555554432 233322222333577777776554444
No 89
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.98 E-value=6.5e-31 Score=248.34 Aligned_cols=301 Identities=11% Similarity=0.081 Sum_probs=215.2
Q ss_pred chhhccccchhhhhhhhcC--CCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEec---CCcCCCCccccchhhh
Q 014005 4 NREEASASLEWKCSQAFGE--RNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETV---GGKNTPNQHISRSELE 78 (432)
Q Consensus 4 ~~~~~~~~~~w~~~~~~~~--~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~---~~~~~~~~~~~~~~~~ 78 (432)
.+..+.....|++...... ......+.|.+.|++++|+|++++|++|+.||+|++||++ .++.. ..+.
T Consensus 81 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~ 153 (437)
T 3gre_A 81 TGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV-------KFLN 153 (437)
T ss_dssp EEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEE-------EEEE
T ss_pred EecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCcee-------eccc
Confidence 3445566778887752211 1123344789999999999999999999999999999995 33211 0000
Q ss_pred ccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCC
Q 014005 79 KQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHF 158 (432)
Q Consensus 79 ~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 158 (432)
...+..+..+. ......+.++.+.+++++.++++++.|+.|++||+.+++.........+
T Consensus 154 ------------~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h 213 (437)
T 3gre_A 154 ------------CECIRKINLKN--------FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPR 213 (437)
T ss_dssp ------------EEEEEEEEGGG--------GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGG
T ss_pred ------------cceeEEEEccC--------cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC
Confidence 00111111110 0012778888876689999999999999999999998875433332113
Q ss_pred CccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeC----CCCCEEE
Q 014005 159 PFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN----SDCETFV 234 (432)
Q Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~ 234 (432)
. +.|.+++|+|++.++++++. |+.|++||++ ..+++..+...|...|.+++|+ |++.+++
T Consensus 214 ~-----------~~v~~~~~s~~~~~l~s~~~--dg~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~ 277 (437)
T 3gre_A 214 H-----------GAVSSICIDEECCVLILGTT--RGIIDIWDIR---FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV 277 (437)
T ss_dssp G-----------CCEEEEEECTTSCEEEEEET--TSCEEEEETT---TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred C-----------CceEEEEECCCCCEEEEEcC--CCeEEEEEcC---CccEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence 3 78999999999999999998 9999999999 6788887744788899999655 5677999
Q ss_pred EE-cCCeEEEEeCCCCCceeeEeecCCC-----------------CcCC--CCcceEEEEEcCCCCcEEEEEeCCCeEEE
Q 014005 235 SA-DDLRINLWNLEISDQCFNIVDMKPS-----------------NMDD--LTEVITSAEFHPIYCNLLAYSSSRGFVRL 294 (432)
Q Consensus 235 ~~-~d~~i~lwd~~~~~~~~~~~~~~~~-----------------~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 294 (432)
+| .|+.|++||++ .+++...+..... .+.+ |...|++++|+ ++ ++|++|+.||.|++
T Consensus 278 s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~ 354 (437)
T 3gre_A 278 GGSSKTFLTIWNFV-KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVM 354 (437)
T ss_dssp EESTTEEEEEEETT-TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEE
T ss_pred EEcCCCcEEEEEcC-CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEE
Confidence 99 99999999999 6666665532110 1223 77889999999 76 89999999999999
Q ss_pred EEccccccccccceeeccccccc------------------------CCccceeeeecceeEEEEcCC--CCEEEEeeC-
Q 014005 295 VDMRQSALCDHSARILRDAAESH------------------------GSKSFFTEIIASISDIKFAND--GQHLLSRDY- 347 (432)
Q Consensus 295 wd~~~~~~~~~~~~~~~~h~~~~------------------------~~~~~~~~~~~~v~~~~~s~d--g~~l~s~~~- 347 (432)
||+++++. ...+.+|.... ........|...|.+++|+++ +.+|++|+.
T Consensus 355 wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~d 430 (437)
T 3gre_A 355 FSLNELSS----SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNS 430 (437)
T ss_dssp EETTCGGG----CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETT
T ss_pred EECCCccc----ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCC
Confidence 99998876 46665541100 000112337889999999998 779999865
Q ss_pred CeEEEEe
Q 014005 348 MNLKVFR 354 (432)
Q Consensus 348 ~~i~iwd 354 (432)
|.|+||+
T Consensus 431 G~I~iw~ 437 (437)
T 3gre_A 431 GLIGIFQ 437 (437)
T ss_dssp SCEEEEC
T ss_pred ceEEEeC
Confidence 9999995
No 90
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=5.8e-30 Score=230.97 Aligned_cols=278 Identities=15% Similarity=0.174 Sum_probs=205.9
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
..++|+||+++ +||+| .|++|+|||+++++.. ....+.+|.
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~-------------------------~~~~~~~~~------------ 67 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDIL-------------------------QLLQMEQPG------------ 67 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEE-------------------------EEEECCSTT------------
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEE-------------------------EEEEecCCC------------
Confidence 45789999986 77766 5899999999987633 112334566
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
..|.+++| +|++++|++|+.||+|++||+++++.... +..|. ..+. .+++.+..+++++. +
T Consensus 68 ~~V~~v~~--~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~--~~~h~-----------~~~~--~~~~~~~~l~s~~~--~ 128 (318)
T 4ggc_A 68 EYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRN--MTSHS-----------ARVG--SLSWNSYILSSGSR--S 128 (318)
T ss_dssp CCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE--EECCS-----------SCEE--EEEEETTEEEEEET--T
T ss_pred CeEEEEEE--CCCCCEEEEEECCCcEEEeecCCceeEEE--ecCcc-----------ceEE--EeecCCCEEEEEec--C
Confidence 88999999 89999999999999999999998874332 33333 3333 34556677888877 8
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (432)
+.+++|+... ....+..+ .+|...+..+.+++++++++++ .|+.|++||++ +++..... ......+...|.+
T Consensus 129 ~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~---~~~~~~~~~~v~~ 201 (318)
T 4ggc_A 129 GHIHHHDVRV--AEHHVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA-PGEGGWVP---LQTFTQHQGAVKA 201 (318)
T ss_dssp SEEEEEETTS--SSCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS-CBTTBSCC---SEEECCCCSCEEE
T ss_pred CceEeeecCC--CceeEEEE-cCccCceEEEEEcCCCCEEEEEecCcceeEEECC-CCcccccc---eeeecccCCceEE
Confidence 9999999874 23444555 7899999999999999999999 99999999998 33321110 0122567788999
Q ss_pred EEEcCCCCcEE--EEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe---eC
Q 014005 273 AEFHPIYCNLL--AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR---DY 347 (432)
Q Consensus 273 ~~~~p~~~~~l--~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~---~~ 347 (432)
+.++|++...+ ++++.++.|++||.+.... ...... ...+..+.|+|++..++++ .+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~----~~~~~~--------------~~~v~~~~~~~~~~~~~~~sg~~d 263 (318)
T 4ggc_A 202 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC----LSAVDA--------------HSQVCSILWSPHYKELISGHGFAQ 263 (318)
T ss_dssp EEECTTSTTEEEEEECTTTCEEEEEETTTCCE----EEEEEC--------------SSCEEEEEEETTTTEEEEEECTTT
T ss_pred EEecCCCCcEEEEEecCCCCEEEEEecccccc----cccccc--------------eeeeeeeeecccccceEEEEEcCC
Confidence 99999885554 3556889999999987664 233333 5789999999999988764 34
Q ss_pred CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 348 MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 348 ~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
+.|++||+ +++.++..|.. .+..+.......++++|+.||.|++|+.
T Consensus 264 ~~i~iwd~~~~~~~~~l~gH~~-----------~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 264 NQLVIWKYPTMAKVAELKGHTS-----------RVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp CCEEEEETTTCCEEEEECCCSS-----------CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred CEEEEEECCCCcEEEEEcCCCC-----------CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 99999999 77788887764 2222222222235899999999999994
No 91
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.98 E-value=2.3e-31 Score=282.80 Aligned_cols=284 Identities=17% Similarity=0.200 Sum_probs=226.2
Q ss_pred CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
+...|.+++|+|+|+++++|+.||.|++|++.+++. ...+.+|.
T Consensus 960 ~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~---------------------------~~~~~~h~--------- 1003 (1249)
T 3sfz_A 960 PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV---------------------------FSSGVGHK--------- 1003 (1249)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC---------------------------EEECCCCS---------
T ss_pred ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce---------------------------eeecccCC---------
Confidence 456799999999999999999999999999988653 35677898
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
..|.+++| +|+++++++++.||.|++||+.+++..... .+. ..+.++.+++++.+ ++++.
T Consensus 1004 ---~~v~~l~~--s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~-----------~~v~~~~~~~~~~l-~~~~~ 1063 (1249)
T 3sfz_A 1004 ---KAVRHIQF--TADGKTLISSSEDSVIQVWNWQTGDYVFLQ---AHQ-----------ETVKDFRLLQDSRL-LSWSF 1063 (1249)
T ss_dssp ---SCCCCEEE--CSSSSCEEEECSSSBEEEEETTTTEEECCB---CCS-----------SCEEEEEECSSSEE-EEEES
T ss_pred ---CceEEEEE--CCCCCEEEEEcCCCEEEEEECCCCceEEEe---cCC-----------CcEEEEEEcCCCcE-EEEEC
Confidence 99999999 899999999999999999999988754332 333 67889999997654 55555
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
++.+++||+. ++++...+ .+|...|.+++|+|+++.++++ .|++|++||+. .+.....+ .+|...
T Consensus 1064 --dg~v~vwd~~---~~~~~~~~-~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~-~~~~~~~l-------~~h~~~ 1129 (1249)
T 3sfz_A 1064 --DGTVKVWNVI---TGRIERDF-TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD-LLSPLHEL-------KGHNGC 1129 (1249)
T ss_dssp --SSEEEEEETT---TTCCCEEE-ECCSSCCCCEEECSSSSSCEEECCSSCCCEECSS-SSSCSBCC-------CCCSSC
T ss_pred --CCcEEEEECC---CCceeEEE-cccCCcEEEEEECCCCCEEEEEcCCCcEEEEECC-Ccceeeee-------ccCCCc
Confidence 8999999998 67777888 7899999999999999999999 99999999998 55555544 789999
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCe
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN 349 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~ 349 (432)
|++++|+|++ ++|++|+.||.|++||+.+++. ...+... ........|...|++++|+|||++|++++ |.
T Consensus 1130 v~~~~~s~dg-~~lat~~~dg~i~vwd~~~~~~----~~~~~~~----~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~ 1199 (1249)
T 3sfz_A 1130 VRCSAFSLDG-ILLATGDDNGEIRIWNVSDGQL----LHSCAPI----SVEEGTATHGGWVTDVCFSPDSKTLVSAG-GY 1199 (1249)
T ss_dssp EEEEEECSSS-SEEEEEETTSCCCEEESSSSCC----CCCCCCC----C-------CCSCCCEEEECTTSSCEEEES-SS
T ss_pred EEEEEECCCC-CEEEEEeCCCEEEEEECCCCce----EEEeccc----cccccccccCceEEEEEECCCCCEEEECC-Ce
Confidence 9999999999 9999999999999999998875 2332100 00000112378899999999999999987 89
Q ss_pred EEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 350 LKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 350 i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
|++||+ +.+..+..+.. .+..+.......++++++.+|.+.+|+-
T Consensus 1200 v~vwd~~~g~~~~~~~~~~~-----------~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1200 LKWWNVATGDSSQTFYTNGT-----------NLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp EEEBCSSSCBCCCCCCCSSC-----------CCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred EEEEECCCCceeeeeeccCC-----------cccEEEECCCCCEEEEecCCcEEEEEee
Confidence 999999 45555554432 2222222223335888999999999983
No 92
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=6.9e-30 Score=241.88 Aligned_cols=280 Identities=35% Similarity=0.570 Sum_probs=203.1
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcce---------eeeeecCCCC-ccccccccccccccccccCCCCC-
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV---------KKIKEMDHFP-FVSSENTLLAEKNFMNEHNPPSF- 182 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~- 182 (432)
+.|.+++| +|++++|++|+.||.|++||+.++.. .....+..|. ++..+.....++.|.+++|+|++
T Consensus 29 ~~V~~v~~--s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 29 DIISTVEF--NHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GSEEEEEE--CSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred CcEEEEEE--CCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 89999999 89999999999999999999987651 1122222221 00000111112679999999998
Q ss_pred -cceecceeeccceEEEEeeccccc------------------------------------ceeeEEeecCCCCCeeEEE
Q 014005 183 -AHGYHLEWTENMATKIANVGNSVH------------------------------------ARCQKVYPHAHDFNINSIS 225 (432)
Q Consensus 183 -~~~~~~~~~~~~~v~i~d~~~~~~------------------------------------~~~~~~~~~~~~~~i~~~~ 225 (432)
..+++++. |+.|++||+..... ..+.+.+..+|...|.+++
T Consensus 107 ~~~l~s~s~--d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 107 AAQFLLSTN--DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp SSEEEEEEC--SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred cceEEEeCC--CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 78888887 99999999874211 0112233368999999999
Q ss_pred eCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccc
Q 014005 226 NNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH 305 (432)
Q Consensus 226 ~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 305 (432)
|+|++++|++|.|+.|++||++..+..+..++.++..+.+|...|++++|+|+++++|++|+.||.|++||+++++.+..
T Consensus 185 ~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 185 INSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp ECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred EcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 99999999999999999999995566777776777777899999999999999768999999999999999998875444
Q ss_pred cceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec----CcceeEeecceeeeehhhhhcccccc
Q 014005 306 SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMS 381 (432)
Q Consensus 306 ~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (432)
....+..| ..+.....+.+|...|.+++|+|+|++|++++++.|++||+ +++..+..|.. ....++.
T Consensus 265 ~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~--------~~~~l~~ 335 (447)
T 3dw8_B 265 HSKLFEEP-EDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEY--------LRSKLCS 335 (447)
T ss_dssp TCEEECCC------CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGG--------GTTTHHH
T ss_pred eeeEeccC-CCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeecccc--------ccccccc
Confidence 45777775 22222233333445999999999999999986699999999 46677777653 1111111
Q ss_pred c------------ccceeeEEEEeecccceeeeeccC
Q 014005 382 I------------YALSCVIYIITTLYLINLSALSAG 406 (432)
Q Consensus 382 ~------------~~~~~~~~~~~g~~~~~i~~~~~~ 406 (432)
. .......++++|+.||.|.+|+..
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence 1 111122258999999999999943
No 93
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=3.8e-31 Score=238.74 Aligned_cols=251 Identities=11% Similarity=0.041 Sum_probs=185.7
Q ss_pred eeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccccc
Q 014005 96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (432)
Q Consensus 96 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (432)
.+.+|. +.|++++| +|++++|++|+.|++|++||+.++....+..+..|. +.|.+
T Consensus 8 ~~~~H~------------~~V~~v~~--s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~-----------~~V~~ 62 (316)
T 3bg1_A 8 VDTSHE------------DMIHDAQM--DYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHE-----------GPVWQ 62 (316)
T ss_dssp ------------------CCEEEEEE--CGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCS-----------SCEEE
T ss_pred eccccc------------CeEEEeeE--cCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCC-----------ccEEE
Confidence 456888 99999999 899999999999999999999877544445555666 88999
Q ss_pred ccCCCC--CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCCCCC
Q 014005 176 EHNPPS--FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISD 250 (432)
Q Consensus 176 ~~~~~~--~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~-~d~~i~lwd~~~~~ 250 (432)
++|+++ +..+++++. |+.|++||++.. ...+...+ .+|...|++++|+|+ +.+|++| .|++|++||++. .
T Consensus 63 v~~~~~~~~~~l~s~s~--D~~v~iWd~~~~-~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~-~ 137 (316)
T 3bg1_A 63 VAWAHPMYGNILASCSY--DRKVIIWREENG-TWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG-E 137 (316)
T ss_dssp EEECCGGGSSCEEEEET--TSCEEEECCSSS-CCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS-S
T ss_pred EEeCCCCCCCEEEEEEC--CCEEEEEECCCC-cceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC-C
Confidence 999863 789999988 999999999832 12345556 789999999999998 7899999 999999999983 3
Q ss_pred ceeeEeecCCCCcCCCCcceEEEEEcCCC----------------CcEEEEEeCCCeEEEEEccccccccccceeecccc
Q 014005 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIY----------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA 314 (432)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~ 314 (432)
...... ..+.+|...|.+++|+|+. .++|++|+.|+.|++||++.+.. ......+.+|
T Consensus 138 ~~~~~~----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-~~~~~~l~~h- 211 (316)
T 3bg1_A 138 GQWEVK----KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ-WKEEQKLEAH- 211 (316)
T ss_dssp SCEEEC----CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC-EEEEECCBCC-
T ss_pred CCccee----eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc-cceeeecccC-
Confidence 221111 1237888999999999972 16899999999999999975421 0114667776
Q ss_pred cccCCccceeeeecceeEEEEcCCC----CEEEEee-CCeEEEEecCc-------ceeEeecceeeeehhhhhccccccc
Q 014005 315 ESHGSKSFFTEIIASISDIKFANDG----QHLLSRD-YMNLKVFRYEP-------VMTLSFCGIYVWILRQLQHSRFMSI 382 (432)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~s~dg----~~l~s~~-~~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (432)
...|.+++|+|++ .+|++|+ |++|++||+.. ...+..|.. .+..+
T Consensus 212 ------------~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-----------~v~~v 268 (316)
T 3bg1_A 212 ------------SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFND-----------VVWHV 268 (316)
T ss_dssp ------------SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSS-----------CEEEE
T ss_pred ------------CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCC-----------cEEEE
Confidence 7899999999986 7899975 59999999822 122322221 12222
Q ss_pred ccceeeEEEEeecccceeeeecc
Q 014005 383 YALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 383 ~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
..+.....+++|+.|+.|++|+.
T Consensus 269 ~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 269 SWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp EECTTTCCEEEEESSSCEEEEEE
T ss_pred EEcCCCCEEEEEcCCCeEEEEEE
Confidence 12222235889999999999994
No 94
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=1.7e-29 Score=257.28 Aligned_cols=261 Identities=16% Similarity=0.246 Sum_probs=215.2
Q ss_pred ccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccc
Q 014005 8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTS 87 (432)
Q Consensus 8 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (432)
+.....|++..- ........|.+.|++++|+|+|++|++|+.||.|++||+.+++.
T Consensus 34 ~g~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~--------------------- 89 (814)
T 3mkq_A 34 SGRVEIWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK--------------------- 89 (814)
T ss_dssp TSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE---------------------
T ss_pred CCEEEEEECCCC---ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE---------------------
Confidence 344556765431 11122235889999999999999999999999999999988763
Q ss_pred cCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccc
Q 014005 88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL 167 (432)
Q Consensus 88 ~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 167 (432)
...+.+|. ..|.+++| +|++++|++++.||.|++||+.++.. ....+..+.
T Consensus 90 ------~~~~~~~~------------~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~-------- 140 (814)
T 3mkq_A 90 ------VVDFEAHP------------DYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWA-LEQTFEGHE-------- 140 (814)
T ss_dssp ------EEEEECCS------------SCEEEEEE--CSSSSEEEEEETTSEEEEEEGGGTSE-EEEEEECCS--------
T ss_pred ------EEEEecCC------------CCEEEEEE--eCCCCEEEEEcCCCEEEEEECCCCce-EEEEEcCCC--------
Confidence 36788898 99999999 89999999999999999999987631 222233333
Q ss_pred ccccccccccCCC-CCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC--CCCEEEEE-cCCeEEE
Q 014005 168 LAEKNFMNEHNPP-SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINL 243 (432)
Q Consensus 168 ~~~~~i~~~~~~~-~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~-~d~~i~l 243 (432)
..+.+++|+| ++..+++++. ++.|++||+. .......+...+...+.+++|+| ++++++++ .|+.|++
T Consensus 141 ---~~v~~~~~~p~~~~~l~~~~~--dg~v~vwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~ 212 (814)
T 3mkq_A 141 ---HFVMCVAFNPKDPSTFASGCL--DRTVKVWSLG---QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212 (814)
T ss_dssp ---SCEEEEEEETTEEEEEEEEET--TSEEEEEETT---CSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEE
T ss_pred ---CcEEEEEEEcCCCCEEEEEeC--CCeEEEEECC---CCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEE
Confidence 6799999999 8889999988 9999999997 44555555345568999999999 99999999 9999999
Q ss_pred EeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccce
Q 014005 244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (432)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~ 323 (432)
||++ .+.....+ .+|...|++++|+|++ ++|++++.||.|++||+.+++. ...+..|
T Consensus 213 ~d~~-~~~~~~~~-------~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~----~~~~~~~---------- 269 (814)
T 3mkq_A 213 WDYQ-TKSCVATL-------EGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKV----EKTLNVG---------- 269 (814)
T ss_dssp EETT-TTEEEEEE-------ECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCSE----EEEECCS----------
T ss_pred EECC-CCcEEEEE-------cCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcE----EEEeecC----------
Confidence 9999 66666665 7888999999999999 8999999999999999998776 5777775
Q ss_pred eeeecceeEEEEcCCCC--EEEEeeCCeEEEEec
Q 014005 324 TEIIASISDIKFANDGQ--HLLSRDYMNLKVFRY 355 (432)
Q Consensus 324 ~~~~~~v~~~~~s~dg~--~l~s~~~~~i~iwd~ 355 (432)
...+.+++|+|+|+ +++++.++.+.+|++
T Consensus 270 ---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 270 ---LERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (814)
T ss_dssp ---SSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred ---CCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence 67999999999987 577888889999998
No 95
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8e-30 Score=229.45 Aligned_cols=257 Identities=12% Similarity=0.177 Sum_probs=205.5
Q ss_pred hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005 6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS 85 (432)
Q Consensus 6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (432)
..+.....|++... ........|.+.|++++|+|++++|++|+.||.|++|++.....
T Consensus 36 ~~dg~v~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~------------------- 93 (313)
T 3odt_A 36 SRDGTVRLWSKDDQ---WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG------------------- 93 (313)
T ss_dssp ETTSEEEEEEESSS---EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT-------------------
T ss_pred EcCCcEEEEECCCC---EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC-------------------
Confidence 44455667766421 11223346788999999999999999999999999999877541
Q ss_pred cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccc
Q 014005 86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN 165 (432)
Q Consensus 86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 165 (432)
.+....+.+|. ..|.+++| +++++++++.|+.|++|| .++ ....+..+.
T Consensus 94 -----~~~~~~~~~~~------------~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~--~~~~~~~~~------ 142 (313)
T 3odt_A 94 -----EDPLYTLIGHQ------------GNVCSLSF----QDGVVISGSWDKTAKVWK--EGS--LVYNLQAHN------ 142 (313)
T ss_dssp -----SCC-CEECCCS------------SCEEEEEE----ETTEEEEEETTSEEEEEE--TTE--EEEEEECCS------
T ss_pred -----CCcccchhhcc------------cCEEEEEe----cCCEEEEEeCCCCEEEEc--CCc--EEEecccCC------
Confidence 23446778898 99999999 367999999999999999 333 222223333
Q ss_pred ccccccccccccCCC-CCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEE
Q 014005 166 TLLAEKNFMNEHNPP-SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINL 243 (432)
Q Consensus 166 ~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~l 243 (432)
..+.++.+.+ ++..+++++. ++.+++||.. +....+...|...+.+++|+|++. ++++ .|+.|++
T Consensus 143 -----~~v~~~~~~~~~~~~l~~~~~--d~~i~i~d~~-----~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i 209 (313)
T 3odt_A 143 -----ASVWDAKVVSFSENKFLTASA--DKTIKLWQND-----KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKL 209 (313)
T ss_dssp -----SCEEEEEEEETTTTEEEEEET--TSCEEEEETT-----EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEE
T ss_pred -----CceeEEEEccCCCCEEEEEEC--CCCEEEEecC-----ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEE
Confidence 6788888887 8889998888 9999999943 455666344899999999999998 7777 9999999
Q ss_pred EeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccce
Q 014005 244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (432)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~ 323 (432)
||++ .++.+..+ ..|...|++++|+|++ . |++++.||.|++||+++++. ...+..|
T Consensus 210 ~d~~-~~~~~~~~-------~~~~~~i~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~~~----~~~~~~~---------- 265 (313)
T 3odt_A 210 VDMH-TGDVLRTY-------EGHESFVYCIKLLPNG-D-IVSCGEDRTVRIWSKENGSL----KQVITLP---------- 265 (313)
T ss_dssp EETT-TCCEEEEE-------ECCSSCEEEEEECTTS-C-EEEEETTSEEEEECTTTCCE----EEEEECS----------
T ss_pred EECC-chhhhhhh-------hcCCceEEEEEEecCC-C-EEEEecCCEEEEEECCCCce----eEEEecc----------
Confidence 9999 66677665 7899999999999998 5 88899999999999998876 5777776
Q ss_pred eeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 324 TEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 324 ~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
...|.+++|+|+|++++++.|+.|++||+
T Consensus 266 ---~~~i~~~~~~~~~~~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 266 ---AISIWSVDCMSNGDIIVGSSDNLVRIFSQ 294 (313)
T ss_dssp ---SSCEEEEEECTTSCEEEEETTSCEEEEES
T ss_pred ---CceEEEEEEccCCCEEEEeCCCcEEEEeC
Confidence 67999999999999776667799999999
No 96
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1e-29 Score=233.13 Aligned_cols=230 Identities=13% Similarity=0.152 Sum_probs=171.7
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
-.|.+.|+|++|+|+|++||+|+.++ ++||+.+..+. ....+.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-----------------------------~~~~~~------- 58 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-----------------------------IMSQEM------- 58 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-----------------------------EEEEEC-------
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-----------------------------eeeeec-------
Confidence 45889999999999999999998775 78999876542 122222
Q ss_pred hhhhhcceeEEEEEEcCCCCEE-EEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 109 SLEIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
..+..+++ .++++.+ ++++.|++|++||+.+++......+ . ..+.++.++++...+.
T Consensus 59 -----~~~~~~~~--~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~---~-----------~~v~~v~~~~~~~~~~- 116 (355)
T 3vu4_A 59 -----RHLSKVRM--LHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV---D-----------APVKDLFLSREFIVVS- 116 (355)
T ss_dssp -----SCCCEEEE--CTTSSEEEEECSSTTEEEEEETTTTEEEEEEEC---S-----------SCEEEEEECSSEEEEE-
T ss_pred -----CCeEEEEE--cCCCCEEEEEECCccEEEEEECCCCcEEEEEEC---C-----------CceEEEEEcCCEEEEE-
Confidence 34677888 6677776 5678889999999998875443332 2 5788888887754332
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEE--E-cCCeEEEEeCCCCCc-------------
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQ------------- 251 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~-~d~~i~lwd~~~~~~------------- 251 (432)
. ++.+++||+... .+.+..+ .. ....+++++ ..+++ | .||.|++||++. +.
T Consensus 117 --~--~~~i~i~d~~~~--~~~~~~~-~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~-~~~~~~~~~~~~~~~ 183 (355)
T 3vu4_A 117 --Y--GDVISVFKFGNP--WKRITDD-IR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQS-SGSATTQDQGVQQKA 183 (355)
T ss_dssp --E--TTEEEEEESSTT--CCBSSCC-EE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC----------------
T ss_pred --E--cCEEEEEECCCC--ceeeEEe-cc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCC-CCccccccccccccc
Confidence 2 789999999832 0333333 12 333455666 55554 6 899999999983 32
Q ss_pred ---eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCe-EEEEEccccccccccceeec-c-cccccCCccceee
Q 014005 252 ---CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILR-D-AAESHGSKSFFTE 325 (432)
Q Consensus 252 ---~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~-~-h~~~~~~~~~~~~ 325 (432)
+... +.+|...|++++|+|++ ++||+|+.||+ |++||+++++. +..+. + |
T Consensus 184 ~~p~~~~-------~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~----~~~~~~g~h------------ 239 (355)
T 3vu4_A 184 ILGKGVL-------IKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVL----VREFRRGLD------------ 239 (355)
T ss_dssp ---CCEE-------ECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCE----EEEEECTTC------------
T ss_pred cCcccEE-------EEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcE----EEEEEcCCC------------
Confidence 1333 38999999999999999 99999999998 99999998876 57776 4 6
Q ss_pred eecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 326 IIASISDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 326 ~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
...|.+++|+|||++|+++++ ++|++||+
T Consensus 240 -~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 240 -RADVVDMKWSTDGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp -CSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred -CCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence 789999999999999999855 99999999
No 97
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=1.2e-29 Score=240.26 Aligned_cols=271 Identities=15% Similarity=0.212 Sum_probs=214.6
Q ss_pred cccCCCc-EEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 28 ELQDVDI-VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 28 ~~~h~~~-V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
...|.+. +.|+.+ +|++|++|+.||+|++||+.+++ ....+.+|.
T Consensus 114 l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~---------------------------~~~~~~~h~----- 159 (445)
T 2ovr_B 114 LKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGK---------------------------CLRTLVGHT----- 159 (445)
T ss_dssp EECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC---------------------------EEEECCCCS-----
T ss_pred ecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCc---------------------------EEEEEcCCC-----
Confidence 3468776 466555 68999999999999999998865 346788999
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
..|.+++| + ++++++|+.||.|++||+.+++.. ..+..+. ..|.++.++ +..++
T Consensus 160 -------~~v~~~~~--~--~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~h~-----------~~v~~~~~~--~~~l~ 213 (445)
T 2ovr_B 160 -------GGVWSSQM--R--DNIIISGSTDRTLKVWNAETGECI--HTLYGHT-----------STVRCMHLH--EKRVV 213 (445)
T ss_dssp -------SCEEEEEE--E--TTEEEEEETTSCEEEEETTTTEEE--EEECCCS-----------SCEEEEEEE--TTEEE
T ss_pred -------CCEEEEEe--c--CCEEEEEeCCCeEEEEECCcCcEE--EEECCCC-----------CcEEEEEec--CCEEE
Confidence 99999999 4 569999999999999999988643 3344444 678888874 56688
Q ss_pred cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
+++. |+.+++||+. .++++..+ .+|...|.++++ +++.+++| .|+.|++||++ .+..+..+ .+
T Consensus 214 s~s~--dg~i~~wd~~---~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~-~~~~~~~~-------~~ 277 (445)
T 2ovr_B 214 SGSR--DATLRVWDIE---TGQCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE-TETCLHTL-------QG 277 (445)
T ss_dssp EEET--TSEEEEEESS---SCCEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGG-GTEEEEEE-------CC
T ss_pred EEeC--CCEEEEEECC---CCcEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECC-CCcEeEEe-------cC
Confidence 8887 9999999998 67788888 789999999999 67889998 99999999999 66777765 78
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~ 345 (432)
|...|.+++| ++ ..+++++.||.|++||+++++. +..+.+| ...+.++.++ +.+|++|
T Consensus 278 ~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~-------------~~~v~~~~~~--~~~l~~~ 335 (445)
T 2ovr_B 278 HTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNC----IHTLTGH-------------QSLTSGMELK--DNILVSG 335 (445)
T ss_dssp CSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCE----EEEECCC-------------CSCEEEEEEE--TTEEEEE
T ss_pred CCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCE----EEEEcCC-------------cccEEEEEEe--CCEEEEE
Confidence 9999999999 66 8999999999999999998876 5777776 6778877774 6688887
Q ss_pred e-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005 346 D-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG 406 (432)
Q Consensus 346 ~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 406 (432)
+ ||.|++||+ +++..+..+.. ....+..+..+ ..++++|+.||.|.+|+..
T Consensus 336 ~~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 336 NADSTVKIWDIKTGQCLQTLQGPNK--------HQSAVTCLQFN--KNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp ETTSCEEEEETTTCCEEEEECSTTS--------CSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred eCCCeEEEEECCCCcEEEEEccCCC--------CCCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence 5 599999999 55566654321 11122222221 2368999999999999943
No 98
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=5.1e-31 Score=244.00 Aligned_cols=282 Identities=9% Similarity=0.054 Sum_probs=195.6
Q ss_pred hccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccc
Q 014005 7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST 86 (432)
Q Consensus 7 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (432)
.+.....|++...- .........|.+.|++++|+|+|++|++|+.|++|++||+.+++.
T Consensus 31 ~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~-------------------- 89 (377)
T 3dwl_C 31 ATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT-------------------- 89 (377)
T ss_dssp SSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C--------------------
T ss_pred CCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc--------------------
Confidence 44556667665310 012233346899999999999999999999999999999988651
Q ss_pred ccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcce-eeeeecCC-CCccccc
Q 014005 87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDH-FPFVSSE 164 (432)
Q Consensus 87 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~-~~~~~~~ 164 (432)
......+.+|. ..|.+++| +|++++|++++.|+.|++||+..++. .....+.. +.
T Consensus 90 ----~~~~~~~~~~~------------~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~----- 146 (377)
T 3dwl_C 90 ----WKQTLVLLRLN------------RAATFVRW--SPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLR----- 146 (377)
T ss_dssp ----CCCEEECCCCS------------SCEEEEEC--CTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCC-----
T ss_pred ----eeeeeEecccC------------CceEEEEE--CCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccC-----
Confidence 12335677888 99999999 89999999999999999999987752 11222222 33
Q ss_pred cccccccccccccCCCCCcceecceeeccceEEEEeecccc---------------cceeeEEeecCCCCCeeEEEeCCC
Q 014005 165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV---------------HARCQKVYPHAHDFNINSISNNSD 229 (432)
Q Consensus 165 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~---------------~~~~~~~~~~~~~~~i~~~~~~~~ 229 (432)
..|.+++|+|++.++++++. |+.+++||++... ..+++..+ +|...|.+++|+|+
T Consensus 147 ------~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~ 216 (377)
T 3dwl_C 147 ------STILSLDWHPNNVLLAAGCA--DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPS 216 (377)
T ss_dssp ------SCEEEEEECTTSSEEEEEES--SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTT
T ss_pred ------CCeEEEEEcCCCCEEEEEeC--CCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCC
Confidence 78999999999999999998 9999999985221 24455554 88999999999999
Q ss_pred CCEEEEE-cCCeEEEEeCCCCCce----eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccc
Q 014005 230 CETFVSA-DDLRINLWNLEISDQC----FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD 304 (432)
Q Consensus 230 ~~~l~~~-~d~~i~lwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~ 304 (432)
+++|+++ .|+.|++||++ .+.. +.. +.+|...|.+++|+|++ ++|++|+.++.+ +|+...+...
T Consensus 217 ~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~~~~~- 285 (377)
T 3dwl_C 217 GNALAYAGHDSSVTIAYPS-APEQPPRALIT-------VKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNESGWA- 285 (377)
T ss_dssp SSCEEEEETTTEEC-CEEC-STTSCEEECCC-------EECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC---C-
T ss_pred CCEEEEEeCCCcEEEEECC-CCCCcceeeEe-------ecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCCCceE-
Confidence 9999999 99999999999 4443 333 37899999999999999 999988766655 6766532210
Q ss_pred ccceeeccccccc--------------------------------------CCccceeeeecceeEEEEcCCC-C---EE
Q 014005 305 HSARILRDAAESH--------------------------------------GSKSFFTEIIASISDIKFANDG-Q---HL 342 (432)
Q Consensus 305 ~~~~~~~~h~~~~--------------------------------------~~~~~~~~~~~~v~~~~~s~dg-~---~l 342 (432)
....+.. +... ........|.+.|+++++.+++ . .|
T Consensus 286 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~ 363 (377)
T 3dwl_C 286 -HTRDLDA-GTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAF 363 (377)
T ss_dssp -CSBCCCS-CCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEE
T ss_pred -EEeeecc-cccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEE
Confidence 0111111 0000 0001112378899999976653 3 57
Q ss_pred EEe-eCCeEEEEec
Q 014005 343 LSR-DYMNLKVFRY 355 (432)
Q Consensus 343 ~s~-~~~~i~iwd~ 355 (432)
+|| .||.|++||+
T Consensus 364 ~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 364 TSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEETTSEEEEECC
T ss_pred EeecCCCcEEEecC
Confidence 776 5699999996
No 99
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=3.8e-29 Score=236.80 Aligned_cols=296 Identities=11% Similarity=0.184 Sum_probs=226.4
Q ss_pred hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005 6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS 85 (432)
Q Consensus 6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (432)
..+.....|++..- +.......|.+.|++++|+ +++|++|+.||+|++||+++++
T Consensus 136 ~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~-------------------- 190 (445)
T 2ovr_B 136 SDDNTLKVWSAVTG---KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE-------------------- 190 (445)
T ss_dssp ETTSCEEEEETTTC---CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE--------------------
T ss_pred ECCCcEEEEECCCC---cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc--------------------
Confidence 34455566765421 1122234689999999998 6799999999999999998865
Q ss_pred cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccc
Q 014005 86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN 165 (432)
Q Consensus 86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 165 (432)
....+.+|. ..|.++.| + ++.+++|+.||.|++||+.+++.... +..+.
T Consensus 191 -------~~~~~~~h~------------~~v~~~~~--~--~~~l~s~s~dg~i~~wd~~~~~~~~~--~~~~~------ 239 (445)
T 2ovr_B 191 -------CIHTLYGHT------------STVRCMHL--H--EKRVVSGSRDATLRVWDIETGQCLHV--LMGHV------ 239 (445)
T ss_dssp -------EEEEECCCS------------SCEEEEEE--E--TTEEEEEETTSEEEEEESSSCCEEEE--EECCS------
T ss_pred -------EEEEECCCC------------CcEEEEEe--c--CCEEEEEeCCCEEEEEECCCCcEEEE--EcCCc------
Confidence 346788898 99999999 3 56899999999999999998774332 33333
Q ss_pred ccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEE
Q 014005 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW 244 (432)
Q Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lw 244 (432)
..+.++.+ ++..+++++. ++.+++||++ ..+++..+ .+|...|.+++| ++..++++ .|+.|++|
T Consensus 240 -----~~v~~~~~--~~~~l~~~~~--dg~i~iwd~~---~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~ 304 (445)
T 2ovr_B 240 -----AAVRCVQY--DGRRVVSGAY--DFMVKVWDPE---TETCLHTL-QGHTNRVYSLQF--DGIHVVSGSLDTSIRVW 304 (445)
T ss_dssp -----SCEEEEEE--CSSCEEEEET--TSCEEEEEGG---GTEEEEEE-CCCSSCEEEEEE--CSSEEEEEETTSCEEEE
T ss_pred -----ccEEEEEE--CCCEEEEEcC--CCEEEEEECC---CCcEeEEe-cCCCCceEEEEE--CCCEEEEEeCCCeEEEE
Confidence 67788887 6788888888 9999999998 77888888 789999999999 78899999 99999999
Q ss_pred eCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcccee
Q 014005 245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (432)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 324 (432)
|++ +++.+..+ .+|...+.++.++ + ++|++|+.||.|++||+++++. +..+..+ .
T Consensus 305 d~~-~~~~~~~~-------~~~~~~v~~~~~~--~-~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~----------~ 359 (445)
T 2ovr_B 305 DVE-TGNCIHTL-------TGHQSLTSGMELK--D-NILVSGNADSTVKIWDIKTGQC----LQTLQGP----------N 359 (445)
T ss_dssp ETT-TCCEEEEE-------CCCCSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCCE----EEEECST----------T
T ss_pred ECC-CCCEEEEE-------cCCcccEEEEEEe--C-CEEEEEeCCCeEEEEECCCCcE----EEEEccC----------C
Confidence 999 66777765 7888889888875 5 7899999999999999998875 5666651 0
Q ss_pred eeecceeEEEEcCCCCEEEEee-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccce-
Q 014005 325 EIIASISDIKFANDGQHLLSRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLIN- 399 (432)
Q Consensus 325 ~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~- 399 (432)
.|...|.+++|+ +++|++|+ ||.|++||+ +.+..+..... ......+..+..+.....+++|+.||.
T Consensus 360 ~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~la~~~~dg~~ 431 (445)
T 2ovr_B 360 KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLES------GGSGGVVWRIRASNTKLVCAVGSRNGTE 431 (445)
T ss_dssp SCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTT------GGGTCEEEEEEECSSEEEEEEECSSSSS
T ss_pred CCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeecccc------CCCCceEEEEEecCCEEEEEEcccCCCC
Confidence 126789999996 57899875 599999999 45555522110 011223444444445567899999997
Q ss_pred ---eeeecc
Q 014005 400 ---LSALSA 405 (432)
Q Consensus 400 ---i~~~~~ 405 (432)
+.+|+-
T Consensus 432 ~~~l~v~df 440 (445)
T 2ovr_B 432 ETKLLVLDF 440 (445)
T ss_dssp CCEEEEEEC
T ss_pred ccEEEEEEC
Confidence 999984
No 100
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=227.90 Aligned_cols=242 Identities=17% Similarity=0.246 Sum_probs=194.9
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
-.|...|++++|+|+|++||+|+.||+|++|++++++ ++..+.+|.
T Consensus 64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~---------------------------~~~~~~~h~------- 109 (318)
T 4ggc_A 64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---------------------------RLRNMTSHS------- 109 (318)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS-------
T ss_pred cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce---------------------------eEEEecCcc-------
Confidence 3578899999999999999999999999999998876 347788998
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..+.++.+ ++..+++++.++.+++|+...... .......+. ..+..+.+.+++.+++++
T Consensus 110 -----~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~l~s~ 168 (318)
T 4ggc_A 110 -----ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEH-HVATLSGHS-----------QEVCGLRWAPDGRHLASG 168 (318)
T ss_dssp -----SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSC-EEEEEECCS-----------SCEEEEEECTTSSEEEEE
T ss_pred -----ceEEEeec----CCCEEEEEecCCceEeeecCCCce-eEEEEcCcc-----------CceEEEEEcCCCCEEEEE
Confidence 77777665 567999999999999999876642 222233333 678889999999999999
Q ss_pred eeeccceEEEEeecccccc-eeeEEeecCCCCCeeEEEeCCCCCEEE---EE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005 189 EWTENMATKIANVGNSVHA-RCQKVYPHAHDFNINSISNNSDCETFV---SA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~---~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (432)
+. |+.+++||++..... ...... ..+.+.|.+++++|++..++ ++ .++.|++||.+ .......
T Consensus 169 ~~--d~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~-~~~~~~~-------- 236 (318)
T 4ggc_A 169 GN--DNLVNVWPSAPGEGGWVPLQTF-TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC-SGACLSA-------- 236 (318)
T ss_dssp ET--TSCEEEEESSCBTTBSCCSEEE-CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT-TCCEEEE--------
T ss_pred ec--CcceeEEECCCCcccccceeee-cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc-ccccccc--------
Confidence 88 999999999854222 223333 67888999999999766443 45 78999999999 4444433
Q ss_pred CCCCcceEEEEEcCCCCcEEEEEe--CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005 264 DDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (432)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 341 (432)
..+...+..+.|+|++ ..+++++ .|+.|++||+++++. +..+.+| .+.|++++|+|||++
T Consensus 237 ~~~~~~v~~~~~~~~~-~~~~~~sg~~d~~i~iwd~~~~~~----~~~l~gH-------------~~~V~~l~~spdg~~ 298 (318)
T 4ggc_A 237 VDAHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAK----VAELKGH-------------TSRVLSLTMSPDGAT 298 (318)
T ss_dssp EECSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCCE----EEEECCC-------------SSCEEEEEECTTSSC
T ss_pred ccceeeeeeeeecccc-cceEEEEEcCCCEEEEEECCCCcE----EEEEcCC-------------CCCEEEEEEcCCCCE
Confidence 3566779999999998 6666554 799999999999886 6889997 889999999999999
Q ss_pred EEEee-CCeEEEEec
Q 014005 342 LLSRD-YMNLKVFRY 355 (432)
Q Consensus 342 l~s~~-~~~i~iwd~ 355 (432)
|+||+ |++|+|||+
T Consensus 299 l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 299 VASAAADETLRLWRC 313 (318)
T ss_dssp EEEEETTTEEEEECC
T ss_pred EEEEecCCeEEEEEC
Confidence 99975 599999998
No 101
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-29 Score=240.26 Aligned_cols=213 Identities=10% Similarity=0.009 Sum_probs=164.8
Q ss_pred cceeEEEEEEcCCCCEE-EEEeCCCeEEEEEcc--CcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 114 EKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l-~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
..|.+++| +|++++| ++++.||.|++||+. +++.........+. ..+.+++|+|++.+++++..
T Consensus 103 ~~v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-----------~~v~~~~~sp~~~~l~~~~~ 169 (450)
T 2vdu_B 103 SYIRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFS-----------KRPNAISIAEDDTTVIIADK 169 (450)
T ss_dssp CCEEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECS-----------SCEEEEEECTTSSEEEEEET
T ss_pred CceEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCC-----------CCceEEEEcCCCCEEEEEeC
Confidence 67999999 8999996 889999999999998 66544333222223 67899999999999999988
Q ss_pred eccceEEEEeecccccce-eeEEeecCCCCCeeEEEeCCC---CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 191 TENMATKIANVGNSVHAR-CQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~---~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
++.+.+|++....... +...+ .+|...|.+++|+|+ +++|++| .|+.|++||++ .+..+..+ ..+
T Consensus 170 --~g~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~------~~~ 239 (450)
T 2vdu_B 170 --FGDVYSIDINSIPEEKFTQEPI-LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP-QCFIVDKW------LFG 239 (450)
T ss_dssp --TSEEEEEETTSCCCSSCCCCCS-EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES-CTTCEEEE------CCC
T ss_pred --CCcEEEEecCCcccccccceee-ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC-CCceeeee------ecC
Confidence 9999999987442222 33355 678999999999999 9899999 99999999999 55555543 268
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccc-cc-------CC----ccceeeeecceeEE
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE-SH-------GS----KSFFTEIIASISDI 333 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~-~~-------~~----~~~~~~~~~~v~~~ 333 (432)
|...|++++|+ ++ ++|++++.|+.|++||+++++. +..+..+.. .+ .+ ..........|.++
T Consensus 240 h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 313 (450)
T 2vdu_B 240 HKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKN----LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI 313 (450)
T ss_dssp CSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCE----EEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred CCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcE----eeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence 99999999999 88 9999999999999999998875 455543210 00 00 00000124578999
Q ss_pred EEcCCCCEEEEee--CCeEEEEec
Q 014005 334 KFANDGQHLLSRD--YMNLKVFRY 355 (432)
Q Consensus 334 ~~s~dg~~l~s~~--~~~i~iwd~ 355 (432)
+|+|++++|+++. ++.|++||+
T Consensus 314 ~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 314 IKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEe
Confidence 9999999999875 499999999
No 102
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=2.2e-29 Score=248.11 Aligned_cols=263 Identities=15% Similarity=0.180 Sum_probs=209.0
Q ss_pred ccccCCCc-EEEEEEcC--CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005 27 EELQDVDI-VSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (432)
Q Consensus 27 ~~~~h~~~-V~~~~fsp--~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~ 103 (432)
....|.+. |++++|+| +|++||+|+.||.|++||+.+++.. ..+.......+.+|.
T Consensus 58 ~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~-------------------~~~~~~~~~~~~~~~-- 116 (615)
T 1pgu_A 58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES-------------------NSVEVNVKSEFQVLA-- 116 (615)
T ss_dssp EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG-------------------TEEEEEEEEEEECCS--
T ss_pred EEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccc-------------------ccccccccchhhccc--
Confidence 34468899 99999999 9999999999999999999754100 000123446778888
Q ss_pred ccccchhhhhcceeEEEEEEcCCCCEEEEEeCC----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCC
Q 014005 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP 179 (432)
Q Consensus 104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 179 (432)
..|.+++| +|+++++++++.+ +.|.+||. ++ ....+..+. ..|.+++|+
T Consensus 117 ----------~~v~~~~~--s~~~~~l~~~~~~~~~~~~v~~~d~--~~--~~~~~~~~~-----------~~v~~~~~~ 169 (615)
T 1pgu_A 117 ----------GPISDISW--DFEGRRLCVVGEGRDNFGVFISWDS--GN--SLGEVSGHS-----------QRINACHLK 169 (615)
T ss_dssp ----------SCEEEEEE--CTTSSEEEEEECCSSCSEEEEETTT--CC--EEEECCSCS-----------SCEEEEEEC
T ss_pred ----------ccEEEEEE--eCCCCEEEEeccCCCCccEEEEEEC--CC--cceeeecCC-----------ccEEEEEEC
Confidence 99999999 8999999999987 68999983 33 333344455 789999999
Q ss_pred CCCc-ceecceeeccceEEEEeecccccceeeEEeecCCCC---CeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCcee
Q 014005 180 PSFA-HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSD-CETFVSA-DDLRINLWNLEISDQCF 253 (432)
Q Consensus 180 ~~~~-~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~ 253 (432)
|++. .+++++. ++.+++||+. ..++...+ .+|.. .|.+++|+|+ +++++++ .|+.|++||++ .++.+
T Consensus 170 ~~~~~~l~~~~~--d~~v~vwd~~---~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~ 242 (615)
T 1pgu_A 170 QSRPMRSMTVGD--DGSVVFYQGP---PFKFSASD-RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK-SGEFL 242 (615)
T ss_dssp SSSSCEEEEEET--TTEEEEEETT---TBEEEEEE-CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT-TCCEE
T ss_pred CCCCcEEEEEeC--CCcEEEEeCC---Ccceeeee-cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC-CCCEe
Confidence 9998 6888887 9999999988 77888888 78888 9999999999 9999999 99999999998 56555
Q ss_pred eEeecCCCCcC---CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecce
Q 014005 254 NIVDMKPSNMD---DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (432)
Q Consensus 254 ~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v 330 (432)
..+ .. .|...|.+++|+ ++ ++|++++.||.|++||+++++. +..+..|.. .+...+
T Consensus 243 ~~~------~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~----~~~~~~~~~---------~~~~~~ 301 (615)
T 1pgu_A 243 KYI------EDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKC----VQKWTLDKQ---------QLGNQQ 301 (615)
T ss_dssp EEC------CBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEE----EEEEECCTT---------CGGGCE
T ss_pred EEe------cccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcE----EEEEcCCCC---------cccCce
Confidence 543 03 788999999999 88 9999999999999999998775 456655210 013577
Q ss_pred eEEEEcCCCCEEEEeeC-CeEEEEec---CcceeEeecce
Q 014005 331 SDIKFANDGQHLLSRDY-MNLKVFRY---EPVMTLSFCGI 366 (432)
Q Consensus 331 ~~~~~s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~~~ 366 (432)
..+.|+ ++.++++++. +.|++||+ +++..+..|..
T Consensus 302 ~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 340 (615)
T 1pgu_A 302 VGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNK 340 (615)
T ss_dssp EEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSS
T ss_pred eEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCC
Confidence 888886 8889988754 99999999 55566665543
No 103
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-29 Score=234.80 Aligned_cols=256 Identities=13% Similarity=0.035 Sum_probs=195.4
Q ss_pred eeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccc
Q 014005 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (432)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (432)
+...+.+|. ..|.+++| +|++++|++|+.||.|++||+..+.......+..|. ..
T Consensus 3 ~~~~~~~h~------------~~v~~~~~--s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-----------~~ 57 (379)
T 3jrp_A 3 MVVIANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE-----------GP 57 (379)
T ss_dssp --CCEEECC------------CCEEEEEE--CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-----------SC
T ss_pred ccEEecCCc------------ccEEEEEE--cCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCC-----------Cc
Confidence 346788999 99999999 899999999999999999999865555555555566 78
Q ss_pred cccccCCCC--CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCC
Q 014005 173 FMNEHNPPS--FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLE 247 (432)
Q Consensus 173 i~~~~~~~~--~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~-~d~~i~lwd~~ 247 (432)
|.+++|+++ +.++++++. |+.|++||+... .......+ ..|...|.+++|+|+ +++++++ .|+.|++||++
T Consensus 58 v~~~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~ 133 (379)
T 3jrp_A 58 VWRVDWAHPKFGTILASCSY--DGKVLIWKEENG-RWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133 (379)
T ss_dssp EEEEEECCGGGCSEEEEEET--TSCEEEEEEETT-EEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred EEEEEeCCCCCCCEEEEecc--CCEEEEEEcCCC-ceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence 999999977 899999998 999999999832 11255666 789999999999999 9999999 99999999998
Q ss_pred CCCceeeEeecCCCCcCCCCcceEEEEEcC-------------CCCcEEEEEeCCCeEEEEEccccccccccceeecccc
Q 014005 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHP-------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA 314 (432)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~ 314 (432)
. ....... .+..|...|++++|+| ++ .+|++++.||.|++||++++.........+.+|
T Consensus 134 ~-~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h- 205 (379)
T 3jrp_A 134 E-NGTTSPI-----IIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH- 205 (379)
T ss_dssp T-TSCCCEE-----EEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-
T ss_pred C-CCceeeE-----EecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEecc-
Confidence 4 3222211 2368889999999999 57 999999999999999999766432234566666
Q ss_pred cccCCccceeeeecceeEEEEcCC---CCEEEEee-CCeEEEEecCc-----ceeEeecceeeeehhhhhcccccccccc
Q 014005 315 ESHGSKSFFTEIIASISDIKFAND---GQHLLSRD-YMNLKVFRYEP-----VMTLSFCGIYVWILRQLQHSRFMSIYAL 385 (432)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~s~d---g~~l~s~~-~~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (432)
...|.+++|+|+ +++|++++ |+.|++||+.. ...+..... ....+..+...
T Consensus 206 ------------~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~~~~v~~~~~s 265 (379)
T 3jrp_A 206 ------------SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEK--------FPDVLWRASWS 265 (379)
T ss_dssp ------------SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSC--------CSSCEEEEEEC
T ss_pred ------------cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecccc--------CCCcEEEEEEc
Confidence 789999999999 89999975 49999999921 111111100 11122222222
Q ss_pred eeeEEEEeecccceeeeecc
Q 014005 386 SCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 386 ~~~~~~~~g~~~~~i~~~~~ 405 (432)
....++++++.||.|.+|+.
T Consensus 266 ~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 266 LSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp SSSCCEEEEESSSSEEEEEE
T ss_pred CCCCEEEEecCCCcEEEEeC
Confidence 22335888889999999993
No 104
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.2e-30 Score=238.02 Aligned_cols=224 Identities=9% Similarity=0.020 Sum_probs=175.1
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
.+.|.+++|+|||+++|+++.|++|+ |....+ .+.+|.
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------------------------------~l~gh~---------- 52 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------------------------------DINCNS---------- 52 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------------------------------CCSSBG----------
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccc------------------------------eecCCC----------
Confidence 46899999999999999999999999 644432 446898
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
..|.+++| +|+| .++.+.+|+.+... ...... . ..|.+++|+|++..+++++.
T Consensus 53 --~~v~~V~F--sPdg-------~~~~~~~~~~~~~~---~~~~~~-~-----------~~V~~vawSPdG~~LAs~s~- 105 (588)
T 2j04_A 53 --KNLFHVKE--FPLE-------FENKLDFELAQQNG---LLNSQP-V-----------CYPRVCKPSPIDDWMAVLSN- 105 (588)
T ss_dssp --GGTEEEEE--ECCC-------CCCTTTTSCCCSSC---SSTTSC-S-----------CCEEEEEECSSSSCEEEEET-
T ss_pred --ccEEEEEE--CCCC-------CcceEEEEeCCCce---EeecCC-C-----------CcEEEEEECCCCCEEEEEeC-
Confidence 99999999 7888 56666666544322 212111 2 78999999999999999998
Q ss_pred ccceEEEEeecccccceeeEEeecCCCC-----CeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCce-------eeEeec
Q 014005 192 ENMATKIANVGNSVHARCQKVYPHAHDF-----NINSISNNSDCETFVSA-DDLRINLWNLEISDQC-------FNIVDM 258 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~-------~~~~~~ 258 (432)
+|.+++||.. . ++..+ . |.. .+.+++|+|+|++|++| .||+|++||+. .+.. +..+..
T Consensus 106 -dg~V~iwd~~---~--~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~-~~~l~~~~~i~l~ti~~ 176 (588)
T 2j04_A 106 -NGNVSVFKDN---K--MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR-KNSENTPEFYFESSIRL 176 (588)
T ss_dssp -TSCEEEEETT---E--EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC-CCTTTCCCCEEEEEEEC
T ss_pred -CCcEEEEeCC---c--eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC-CCccccccceeeeeeec
Confidence 9999999964 2 66665 4 554 59999999999999999 99999999999 4431 333211
Q ss_pred CCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeec-ccccccCCccceeeeecceeEEEEcC
Q 014005 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR-DAAESHGSKSFFTEIIASISDIKFAN 337 (432)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~~v~~~~~s~ 337 (432)
...+|.++|.+++|+|+| +++++.|+.|++||+.+++.. ...+.+. +| ...|.+++|+
T Consensus 177 ---~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~-~~~~tL~~~h-------------~~~V~svaFs- 235 (588)
T 2j04_A 177 ---SDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQ-PVSRMIQNAS-------------RRKITDLKIV- 235 (588)
T ss_dssp ---SCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSC-CCEEEEECCC-------------SSCCCCEEEE-
T ss_pred ---ccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccc-cceeeecccc-------------cCcEEEEEEE-
Confidence 125688999999999986 888999999999999876631 0124453 55 6789999999
Q ss_pred CCCEEEEeeCCeEEEEec
Q 014005 338 DGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 338 dg~~l~s~~~~~i~iwd~ 355 (432)
|++||++++++|++||+
T Consensus 236 -g~~LASa~~~tIkLWd~ 252 (588)
T 2j04_A 236 -DYKVVLTCPGYVHKIDL 252 (588)
T ss_dssp -TTEEEEECSSEEEEEET
T ss_pred -CCEEEEEeCCeEEEEEC
Confidence 68999987899999999
No 105
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.8e-30 Score=241.58 Aligned_cols=246 Identities=16% Similarity=0.092 Sum_probs=170.4
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
.+....+++++.+||+|+.|++|+|||.+++... .......+.+|.
T Consensus 91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~----------------------~~~~~~~~~gH~------------ 136 (393)
T 4gq1_A 91 DGNVNSSPVYSLFLACVCQDNTVRLIITKNETII----------------------TQHVLGGKSGHH------------ 136 (393)
T ss_dssp ------CCEEEEEEEEEETTSCEEEEEEETTEEE----------------------EEEEECTTTSCS------------
T ss_pred CcceeecCCCCCEEEEEeCCCcEEEEECCCCccc----------------------eeeeecccCCCC------------
Confidence 3334444556778999999999999999887532 122345678999
Q ss_pred cceeEEEEEEc------CCCCEEEEEeCCCeEEEEEccCcce-eeeeecCCCCccccccccccccccccccCCCCCc-ce
Q 014005 114 EKINRVRWCAA------PNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HG 185 (432)
Q Consensus 114 ~~v~~l~~~~s------~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~ 185 (432)
+.|++++|+|. .|+++|++++.|++|++||+.++.. ..... +. ..+.+++|+|++. ++
T Consensus 137 ~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~---~~-----------~~v~~v~~~p~~~~~l 202 (393)
T 4gq1_A 137 NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYP---LS-----------SPGISVQFRPSNPNQL 202 (393)
T ss_dssp SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEE---CS-----------SCEEEEEEETTEEEEE
T ss_pred CceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecC---CC-----------CCcEEEEECCCCCceE
Confidence 99999999541 2788999999999999999987652 22222 22 6788999999875 78
Q ss_pred ecceeeccceEEEEeecccccceee----------------------EEeecCCCCCeeEEEeC-CCCCEEEEE-cCCeE
Q 014005 186 YHLEWTENMATKIANVGNSVHARCQ----------------------KVYPHAHDFNINSISNN-SDCETFVSA-DDLRI 241 (432)
Q Consensus 186 ~~~~~~~~~~v~i~d~~~~~~~~~~----------------------~~~~~~~~~~i~~~~~~-~~~~~l~~~-~d~~i 241 (432)
++++. |+.|++||++........ ... .+|...+.++.|+ ++++.++++ .|+++
T Consensus 203 ~~~~~--d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~v~~v~~~~~dg~~l~s~s~d~~i 279 (393)
T 4gq1_A 203 IVGER--NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS-SGIASSLANVRWIGSDGSGILAMCKSGAW 279 (393)
T ss_dssp EEEET--TSEEEEEETTCCC----------CSCCCSEEEESGGGC-------CCSSSCSEEEEETTTTCEEEEECTTSEE
T ss_pred EecCC--CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec-ccccccceeeeeecCCCCEEEEEeCCCCE
Confidence 88888 999999998743111000 011 3677889999986 799999999 99999
Q ss_pred EEEeCCCCCceeeEeecCCCCcCCCCcce------------------EEEEEcC-CCCcEEEEEeCCCeEEEEEcccccc
Q 014005 242 NLWNLEISDQCFNIVDMKPSNMDDLTEVI------------------TSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 242 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~v------------------~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
++||+. .+.....+ ..|...+ ....|+| .+..++++|+.||.|++||+.+++.
T Consensus 280 ~vwd~~-~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~ 351 (393)
T 4gq1_A 280 LRWNLF-ANNDYNEI-------SDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS 351 (393)
T ss_dssp EEEEC---------------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC
T ss_pred EEEECc-cCCCCceE-------eeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE
Confidence 999998 34333322 2222222 2233444 2325677788999999999998876
Q ss_pred ccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 303 ~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
...+..| ..+|.+++|+|||++||+++++.+.+|++
T Consensus 352 ----~~~~~~~-------------~~~V~svafspdG~~LA~as~~Gv~lvrL 387 (393)
T 4gq1_A 352 ----NSIPIQL-------------GMPIVDFCWHQDGSHLAIATEGSVLLTRL 387 (393)
T ss_dssp ----CEEEEEC-------------SSCEEEEEECTTSSEEEEEESSEEEEEEE
T ss_pred ----EEEecCC-------------CCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 4555565 67999999999999999998888888876
No 106
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=3.9e-29 Score=233.47 Aligned_cols=244 Identities=13% Similarity=0.116 Sum_probs=193.4
Q ss_pred EEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 35 VSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 35 V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
...++++|+...+ ++++.||.|+||+++..... ......+.+|.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----------------------~~~~~~~~~h~------------ 81 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-----------------------DKNVPLVCGHT------------ 81 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-----------------------CTTCCCBCCCS------------
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-----------------------CCCCceEecCC------------
Confidence 4468888887654 45789999999998654211 11234677898
Q ss_pred cceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcce-----eeeeecCCCCccccccccccccccccccCCCCC-ccee
Q 014005 114 EKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKV-----KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGY 186 (432)
Q Consensus 114 ~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~ 186 (432)
..|.+++| +| ++++|++|+.||.|++||+.++.. .....+..|. ..|.+++|+|++ ..++
T Consensus 82 ~~V~~~~~--~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~-----------~~v~~~~~~p~~~~~l~ 148 (402)
T 2aq5_A 82 APVLDIAW--CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT-----------KRVGIVAWHPTAQNVLL 148 (402)
T ss_dssp SCEEEEEE--CTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS-----------SCEEEEEECSSBTTEEE
T ss_pred CCEEEEEe--CCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC-----------CeEEEEEECcCCCCEEE
Confidence 99999999 88 899999999999999999987742 2233334444 789999999998 6888
Q ss_pred cceeeccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (432)
+++. |+.|++||++ .++++..+. ..|...|.+++|+|++++|+++ .|+.|++||++ .+..+..+ ..
T Consensus 149 s~~~--dg~i~iwd~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~------~~ 216 (402)
T 2aq5_A 149 SAGC--DNVILVWDVG---TGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR-KGTVVAEK------DR 216 (402)
T ss_dssp EEET--TSCEEEEETT---TTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT-TTEEEEEE------EC
T ss_pred EEcC--CCEEEEEECC---CCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC-CCceeeee------cc
Confidence 8888 9999999998 667777763 5789999999999999999999 99999999999 56555543 14
Q ss_pred CCCcc-eEEEEEcCCCCcEEEEE---eCCCeEEEEEccccccccccceeec-ccccccCCccceeeeecceeEEEEcCCC
Q 014005 265 DLTEV-ITSAEFHPIYCNLLAYS---SSRGFVRLVDMRQSALCDHSARILR-DAAESHGSKSFFTEIIASISDIKFANDG 339 (432)
Q Consensus 265 ~~~~~-v~~~~~~p~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~~v~~~~~s~dg 339 (432)
.|... +.++.|+|++ ++|++| +.|+.|++||+++++.. ..... .| ...+..++|+|+|
T Consensus 217 ~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~---~~~~~~~~-------------~~~v~~~~~s~~~ 279 (402)
T 2aq5_A 217 PHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEP---LSLQELDT-------------SSGVLLPFFDPDT 279 (402)
T ss_dssp SSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSC---SEEEECCC-------------CSSCEEEEEETTT
T ss_pred CCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCC---ceEEeccC-------------CCceeEEEEcCCC
Confidence 56554 8999999998 999999 79999999999986642 22222 22 5789999999999
Q ss_pred CEEEE-ee-CCeEEEEec
Q 014005 340 QHLLS-RD-YMNLKVFRY 355 (432)
Q Consensus 340 ~~l~s-~~-~~~i~iwd~ 355 (432)
++|++ |+ |+.|++||+
T Consensus 280 ~~l~~~g~~dg~i~i~d~ 297 (402)
T 2aq5_A 280 NIVYLCGKGDSSIRYFEI 297 (402)
T ss_dssp TEEEEEETTCSCEEEEEE
T ss_pred CEEEEEEcCCCeEEEEEe
Confidence 99964 63 699999999
No 107
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.4e-29 Score=228.72 Aligned_cols=232 Identities=10% Similarity=0.023 Sum_probs=174.6
Q ss_pred EEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeE
Q 014005 39 EFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR 118 (432)
Q Consensus 39 ~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 118 (432)
.+.+++++|++|+.||+|++||+++++.. ..+. . ..|.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~---------------------------~~~~--~------------~~v~~ 81 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTI---------------------------TTIT--T------------PNPRT 81 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCE---------------------------EEEE--E------------ECCCT
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEE---------------------------EEEe--c------------CCcee
Confidence 34467889999999999999999887643 2332 3 66778
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEccCcce-------eeeeecCCCCccccccccccccccccccCCC--CCcceecce
Q 014005 119 VRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-------KKIKEMDHFPFVSSENTLLAEKNFMNEHNPP--SFAHGYHLE 189 (432)
Q Consensus 119 l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~ 189 (432)
+.| +|+ +++++.|++|++|+...... ..+..+. ....+.|.+++++| ++.++++++
T Consensus 82 ~~~--~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~l~s~s 146 (343)
T 3lrv_A 82 GGE--HPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE----------VDSANEIIYMYGHNEVNTEYFIWAD 146 (343)
T ss_dssp TCC--CCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE----------CCCSSCEEEEECCC---CCEEEEEE
T ss_pred eee--CCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee----------cCCCCCEEEEEcCCCCCCCEEEEEe
Confidence 888 666 99999999999998764210 0011111 01126799999999 999999999
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCcee-eEeecCCCCcCC-C
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF-NIVDMKPSNMDD-L 266 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~-~~~~~~~~~~~~-~ 266 (432)
. |+.+++||++ .+++.......+...+.+++|+|++.++++| .|+.|++||++ .+... ..+ .. |
T Consensus 147 ~--dg~i~~wd~~---~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~-~~~~~~~~~-------~~~h 213 (343)
T 3lrv_A 147 N--RGTIGFQSYE---DDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS-SPDQASSRF-------PVDE 213 (343)
T ss_dssp T--TCCEEEEESS---SSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS-CTTSCCEEC-------CCCT
T ss_pred C--CCcEEEEECC---CCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC-CCCCCccEE-------eccC
Confidence 8 9999999998 5666665534566689999999999999999 99999999999 45444 444 55 8
Q ss_pred CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecce--eEEEEcCCCCEEEE
Q 014005 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI--SDIKFANDGQHLLS 344 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v--~~~~~s~dg~~l~s 344 (432)
...|++++|+|++ .+|++++ |+.|++||+++++. ...+..+. .+...+ .+++|+|+|++|++
T Consensus 214 ~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~----~~~~~~~~----------~~~~~~~~~~~~~~~~g~~l~~ 277 (343)
T 3lrv_A 214 EAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVG----TLAYPTYT----------IPEFKTGTVTYDIDDSGKNMIA 277 (343)
T ss_dssp TSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTT----CBSSCCCB----------C-----CCEEEEECTTSSEEEE
T ss_pred CCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCc----ceeecccc----------cccccccceEEEECCCCCEEEE
Confidence 9999999999999 9999999 55999999998764 23333210 002333 36999999999999
Q ss_pred e-e-CCeEEEEec
Q 014005 345 R-D-YMNLKVFRY 355 (432)
Q Consensus 345 ~-~-~~~i~iwd~ 355 (432)
+ . ++.+++|++
T Consensus 278 ~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 278 YSNESNSLTIYKF 290 (343)
T ss_dssp EETTTTEEEEEEE
T ss_pred ecCCCCcEEEEEE
Confidence 5 3 799999999
No 108
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=2.3e-28 Score=230.67 Aligned_cols=235 Identities=14% Similarity=0.242 Sum_probs=194.3
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..|.+.|++++| ++++|++|+.||+|++||+++++ ....+.+|.
T Consensus 170 ~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~---------------------------~~~~~~~h~------- 213 (435)
T 1p22_A 170 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE---------------------------MLNTLIHHC------- 213 (435)
T ss_dssp CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC---------------------------EEEEECCCC-------
T ss_pred cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc---------------------------EEEEEcCCC-------
Confidence 368999999998 78899999999999999998875 346788898
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceee-eeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
..|.+++| + +.++++|+.||.|++||+.++.... ......+. ..+.++++ ++.++++
T Consensus 214 -----~~v~~l~~--~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-----------~~v~~~~~--~~~~l~s 271 (435)
T 1p22_A 214 -----EAVLHLRF--N--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR-----------AAVNVVDF--DDKYIVS 271 (435)
T ss_dssp -----SCEEEEEC--C--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS-----------SCEEEEEE--ETTEEEE
T ss_pred -----CcEEEEEE--c--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCC-----------CcEEEEEe--CCCEEEE
Confidence 99999999 4 4599999999999999998776332 22333444 67778877 7788888
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
++. |+.+++||++ +.+++..+ .+|...|.++++ +++.+++| .|+.|++||++ ++.++..+ .+|
T Consensus 272 ~~~--dg~i~vwd~~---~~~~~~~~-~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~-~~~~~~~~-------~~h 335 (435)
T 1p22_A 272 ASG--DRTIKVWNTS---TCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE-CGACLRVL-------EGH 335 (435)
T ss_dssp EET--TSEEEEEETT---TCCEEEEE-ECCSSCEEEEEE--ETTEEEEEETTSCEEEEETT-TCCEEEEE-------CCC
T ss_pred EeC--CCeEEEEECC---cCcEEEEE-cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC-CCCEEEEE-------eCC
Confidence 888 9999999998 77888888 789999999999 46789999 99999999999 67777766 789
Q ss_pred CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccc-----cceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-----SARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 341 (432)
...|.+++| ++ .+|++|+.||.|++||++++..... .+..+.+| ...|.+++| ++++
T Consensus 336 ~~~v~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h-------------~~~v~~l~~--~~~~ 397 (435)
T 1p22_A 336 EELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH-------------SGRVFRLQF--DEFQ 397 (435)
T ss_dssp SSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC-------------SSCCCCEEE--CSSC
T ss_pred cCcEEEEEe--cC-CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC-------------CCCeEEEEe--CCCE
Confidence 999999999 56 8999999999999999987652100 14566666 789999999 6888
Q ss_pred EEEee-CCeEEEEec
Q 014005 342 LLSRD-YMNLKVFRY 355 (432)
Q Consensus 342 l~s~~-~~~i~iwd~ 355 (432)
|++|+ ||.|++||+
T Consensus 398 l~s~s~Dg~i~iwd~ 412 (435)
T 1p22_A 398 IVSSSHDDTILIWDF 412 (435)
T ss_dssp EEECCSSSEEEEEC-
T ss_pred EEEEeCCCEEEEEEC
Confidence 99975 599999999
No 109
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-28 Score=250.64 Aligned_cols=258 Identities=14% Similarity=0.098 Sum_probs=191.2
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..|.+.|++++|+|+|++||+|+.||+|+||+..+.+.. . ...|.
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~---------------------------~-~~~~~------- 58 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV---------------------------I-KLEDR------- 58 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE---------------------------E-ECSSC-------
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE---------------------------E-EcCCC-------
Confidence 468899999999999999999999999999998664321 2 22466
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..|.+++| +| +++|++++.|++|++||+.+++...... +. +.|.+++|+|++.++++|
T Consensus 59 -----~~V~~l~f--sp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~---~~-----------~~V~~v~~sp~g~~l~sg 116 (902)
T 2oaj_A 59 -----SAIKEMRF--VK-GIYLVVINAKDTVYVLSLYSQKVLTTVF---VP-----------GKITSIDTDASLDWMLIG 116 (902)
T ss_dssp -----CCEEEEEE--ET-TTEEEEEETTCEEEEEETTTCSEEEEEE---CS-----------SCEEEEECCTTCSEEEEE
T ss_pred -----CCEEEEEE--cC-CCEEEEEECcCeEEEEECCCCcEEEEEc---CC-----------CCEEEEEECCCCCEEEEE
Confidence 88999999 67 7799999999999999999877443322 22 579999999999999999
Q ss_pred eeeccceEEEEeecccccceee-----------EEeecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeE
Q 014005 189 EWTENMATKIANVGNSVHARCQ-----------KVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNI 255 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~-----------~~~~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~ 255 (432)
+. +|.|++||++. ..+. ..+ .+|.+.|.+++|+|+ +..+++| .|+.| +||++ .++....
T Consensus 117 s~--dg~V~lwd~~~---~~~~~~~i~~~~~~~~~~-~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~-~~~~~~~ 188 (902)
T 2oaj_A 117 LQ--NGSMIVYDIDR---DQLSSFKLDNLQKSSFFP-AARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV-ENEIKQS 188 (902)
T ss_dssp ET--TSCEEEEETTT---TEEEEEEECCHHHHHTCS-SSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT-TTEEEEE
T ss_pred cC--CCcEEEEECCC---Cccccceecccccccccc-ccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC-CCceEEE
Confidence 98 99999999983 3332 122 578899999999996 4688888 99999 99999 6677666
Q ss_pred eecCC-----------CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceee---cccccccC-Cc
Q 014005 256 VDMKP-----------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL---RDAAESHG-SK 320 (432)
Q Consensus 256 ~~~~~-----------~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~h~~~~~-~~ 320 (432)
+.... .....|...|++++|+|++ ++|++|+.||.|++||+++++... .+.+ ..|..... ..
T Consensus 189 ~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~--~r~l~~~~~~~~~~~~~~ 265 (902)
T 2oaj_A 189 FIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIM--ARTVFETEINVPQPDYIR 265 (902)
T ss_dssp ECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEE--EECSSCSCTTSCCTTCCC
T ss_pred EecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEE--EEeecccccCCCCCcCCC
Confidence 52210 0113456789999999999 999999999999999999876521 0112 12210000 00
Q ss_pred cceeeeecceeEEEEc----CCC-CEEEEeeC------CeEEEEec
Q 014005 321 SFFTEIIASISDIKFA----NDG-QHLLSRDY------MNLKVFRY 355 (432)
Q Consensus 321 ~~~~~~~~~v~~~~~s----~dg-~~l~s~~~------~~i~iwd~ 355 (432)
..+ .+..+|.+++|+ |++ .+|++|++ ..+++|++
T Consensus 266 ~~~-~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 266 DSS-TNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp CCS-SCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred CCc-cccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 000 124579999995 553 56777633 27889884
No 110
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=4.2e-29 Score=227.83 Aligned_cols=266 Identities=11% Similarity=0.027 Sum_probs=199.8
Q ss_pred hccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCC-EEEEecccceEEEEEe-cCCcCCCCccccchhhhcccccc
Q 014005 7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFET-VGGKNTPNQHISRSELEKQMDFT 84 (432)
Q Consensus 7 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~ 84 (432)
.+.....|++..............|...|++++|+|+++ +|++|+.||.|++||+ ++++.
T Consensus 31 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~------------------ 92 (342)
T 1yfq_A 31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF------------------ 92 (342)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE------------------
T ss_pred CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce------------------
Confidence 334455666653211111233457899999999999999 9999999999999999 77642
Q ss_pred ccccCCcceeeeeec--CCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccC---------cceeeee
Q 014005 85 STSHPEYRYKTEFQS--HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD---------QKVKKIK 153 (432)
Q Consensus 85 ~~~~p~~~~~~~~~~--h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~ 153 (432)
..+.+ |. ..|.+++| +| +.++++++.|+.|++||+.+ ++...
T Consensus 93 ----------~~~~~~~~~------------~~v~~l~~--~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-- 145 (342)
T 1yfq_A 93 ----------QALTNNEAN------------LGICRICK--YG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN-- 145 (342)
T ss_dssp ----------EECBSCCCC------------SCEEEEEE--ET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS--
T ss_pred ----------EeccccCCC------------CceEEEEe--CC-CCEEEEEcCCCeEEEEcccccccccccccCCeee--
Confidence 46677 88 99999999 67 89999999999999999986 44222
Q ss_pred ecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecc-cccceeeEEeecCCCCCeeEEEeCC-CCC
Q 014005 154 EMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN-SVHARCQKVYPHAHDFNINSISNNS-DCE 231 (432)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 231 (432)
.+. +. ..+.+++|+++. +++++. ++.+++||++. . ........ ..|...+.+++|+| +++
T Consensus 146 ~~~-~~-----------~~v~~~~~~~~~--l~~~~~--d~~i~i~d~~~~~-~~~~~~~~-~~~~~~i~~i~~~~~~~~ 207 (342)
T 1yfq_A 146 NTK-VK-----------NKIFTMDTNSSR--LIVGMN--NSQVQWFRLPLCE-DDNGTIEE-SGLKYQIRDVALLPKEQE 207 (342)
T ss_dssp SSS-SC-----------CCEEEEEECSSE--EEEEES--TTEEEEEESSCCT-TCCCEEEE-CSCSSCEEEEEECSGGGC
T ss_pred EEe-eC-----------CceEEEEecCCc--EEEEeC--CCeEEEEECCccc-cccceeee-cCCCCceeEEEECCCCCC
Confidence 122 22 688999999888 777776 99999999985 2 12222233 67888999999999 999
Q ss_pred EEEEE-cCCeEEEEeCCCC-----CceeeEeecCCC--CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccc
Q 014005 232 TFVSA-DDLRINLWNLEIS-----DQCFNIVDMKPS--NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303 (432)
Q Consensus 232 ~l~~~-~d~~i~lwd~~~~-----~~~~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~ 303 (432)
+++++ .||.+++|+++.. ......+..... .-.+|...|++++|+|++ ++|++++.||.|++||+++++.
T Consensus 208 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~- 285 (342)
T 1yfq_A 208 GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKK- 285 (342)
T ss_dssp EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEE-
T ss_pred EEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEcCccHhH-
Confidence 99999 9999999999844 144444411100 001234599999999999 9999999999999999998876
Q ss_pred cccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCe-EEEEe
Q 014005 304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN-LKVFR 354 (432)
Q Consensus 304 ~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~-i~iwd 354 (432)
+..+.+| |...|.+++ |+|++|+++ .||. .+.|.
T Consensus 286 ---~~~~~~~------------h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 286 ---IKNFAKF------------NEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp ---EEECCCC------------SSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred ---hhhhhcc------------cCCCceEec--CCCCeEEEEecCCccccccc
Confidence 5667763 257899999 999999997 5576 44444
No 111
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.6e-28 Score=228.25 Aligned_cols=265 Identities=12% Similarity=0.074 Sum_probs=187.8
Q ss_pred cchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCC
Q 014005 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE 90 (432)
Q Consensus 11 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 90 (432)
...|++-. ++......++|.+.|.+++|||+|++||+++.||.|+|||.++
T Consensus 66 ~~~~~~~~--~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--------------------------- 116 (588)
T 2j04_A 66 ENKLDFEL--AQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--------------------------- 116 (588)
T ss_dssp CCTTTTSC--CCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---------------------------
T ss_pred cceEEEEe--CCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---------------------------
Confidence 34455543 2333344557788999999999999999999999999999533
Q ss_pred cceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcce-----eeeeec----CCCCcc
Q 014005 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-----KKIKEM----DHFPFV 161 (432)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~----~~~~~~ 161 (432)
++..+. |..- +. ...|.+++| +|||++|++|+.||+|++||+.++.. ..+..+ ..|.
T Consensus 117 --~l~~l~-~~~~---~~----~~sv~svaf--SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~-- 182 (588)
T 2j04_A 117 --MLTNLD-SKGN---LS----SRTYHCFEW--NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSK-- 182 (588)
T ss_dssp --EEEECC-CSSC---ST----TTCEEEEEE--CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC--
T ss_pred --eeeecc-CCCc---cc----cccEEEEEE--cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccccc--
Confidence 223445 5400 00 035999999 99999999999999999999998753 112222 3344
Q ss_pred ccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeE
Q 014005 162 SSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRI 241 (432)
Q Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i 241 (432)
+.|.+++|+|++ ++.++. |+.+++|++.........+++..+|...|.+++|+ ++.+|++.+++|
T Consensus 183 ---------~~V~sVawSPdg--Laass~--D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tI 247 (588)
T 2j04_A 183 ---------DWVTHIVWYEDV--LVAALS--NNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCPGYV 247 (588)
T ss_dssp ---------CCEEEEEEETTE--EEEEET--TCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECSSEE
T ss_pred ---------ccEEEEEEcCCc--EEEEeC--CCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEeCCeE
Confidence 789999999999 666666 99999999985432223345534788999999999 688998867999
Q ss_pred EEEeCCCCCceeeEeecCCCCcCCCCcceEEEEE--cCCCCcEEEEEeCCCeEEEEEccccc------cc---cccceee
Q 014005 242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCNLLAYSSSRGFVRLVDMRQSA------LC---DHSARIL 310 (432)
Q Consensus 242 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~~dg~i~iwd~~~~~------~~---~~~~~~~ 310 (432)
++||+. +++..... .+|.+.|..++| +|++ ..+++++.||+ ++|....-. .. .+.++.+
T Consensus 248 kLWd~~-~~~~~~~~-------~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW 317 (588)
T 2j04_A 248 HKIDLK-NYSISSLK-------TGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKW 317 (588)
T ss_dssp EEEETT-TTEEEEEE-------CSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHT
T ss_pred EEEECC-CCeEEEEE-------cCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEE
Confidence 999999 44432222 479999999999 9999 99999999999 999974210 00 0000111
Q ss_pred cccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005 311 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (432)
Q Consensus 311 ~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~ 347 (432)
.. .-.....+.. ...|.+++|||||+.+|++.+
T Consensus 318 ~~---~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 318 ST---IWNEFNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TT---TTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred EC---CCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 00 0001122222 567999999999999999753
No 112
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.5e-28 Score=228.17 Aligned_cols=251 Identities=12% Similarity=0.118 Sum_probs=194.3
Q ss_pred cCCCcEEEEEEcCCCCEE-EEecccceEEEEEec--CCcCCCCccccchhhhccccccccccCCcceeeeee--cCCccc
Q 014005 30 QDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEF 104 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~h~~~~ 104 (432)
.|.+.|++++|+|+|++| ++|+.||.|+|||+. +++. ...+. .|.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~---------------------------~~~~~~~~~~--- 149 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV---------------------------LKLRKRFCFS--- 149 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC---------------------------EEEEEEEECS---
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce---------------------------eeeeecccCC---
Confidence 566789999999999996 899999999999998 5542 23444 455
Q ss_pred cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceee--eeecCCCCccccccccccccccccccCCCC-
Q 014005 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK--IKEMDHFPFVSSENTLLAEKNFMNEHNPPS- 181 (432)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 181 (432)
..|.+++| +|++++|++++.||.|++|++..+.... ...+..+. ..|.+++|+|+
T Consensus 150 ---------~~v~~~~~--sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~-----------~~v~~~~~sp~~ 207 (450)
T 2vdu_B 150 ---------KRPNAISI--AEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHV-----------SMLTDVHLIKDS 207 (450)
T ss_dssp ---------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECS-----------SCEEEEEEEECT
T ss_pred ---------CCceEEEE--cCCCCEEEEEeCCCcEEEEecCCcccccccceeeeccc-----------CceEEEEEcCCC
Confidence 88999999 8999999999999999999998766331 11223333 78999999999
Q ss_pred --CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeec
Q 014005 182 --FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM 258 (432)
Q Consensus 182 --~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~ 258 (432)
+.++++++. |+.|++||+. .+.++..+..+|...|.+++|+ ++++|+++ .|+.|++||++ +++.+..+..
T Consensus 208 ~~~~~l~s~~~--d~~i~vwd~~---~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~ 280 (450)
T 2vdu_B 208 DGHQFIITSDR--DEHIKISHYP---QCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWK-TGKNLSTFDY 280 (450)
T ss_dssp TSCEEEEEEET--TSCEEEEEES---CTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETT-TCCEEEEEEC
T ss_pred CCCcEEEEEcC--CCcEEEEECC---CCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECC-CCcEeeeecc
Confidence 999999988 9999999998 5666666436899999999999 99999999 99999999999 6666666532
Q ss_pred CC------------------CCcCCCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEc--cccccccccceeeccccccc
Q 014005 259 KP------------------SNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDM--RQSALCDHSARILRDAAESH 317 (432)
Q Consensus 259 ~~------------------~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~--~~~~~~~~~~~~~~~h~~~~ 317 (432)
.. .........|.+++|+|++ ++|++++ .|+.|++||+ .++.. ...+..+..|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~-l~~~~~~~~~---- 354 (450)
T 2vdu_B 281 NSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGD-LALKQIITFP---- 354 (450)
T ss_dssp HHHHGGGCCTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTC-EEEEEEEECS----
T ss_pred hhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCc-eeeccEeccC----
Confidence 10 0001234579999999999 8888888 8999999999 44311 1114556553
Q ss_pred CCccceeeeecceeEEEEcCCCCEEEEee-------CCeEEEEec
Q 014005 318 GSKSFFTEIIASISDIKFANDGQHLLSRD-------YMNLKVFRY 355 (432)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-------~~~i~iwd~ 355 (432)
..|.+++|+|++.++++++ ++.|.+|.+
T Consensus 355 ----------~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 355 ----------YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp ----------SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred ----------CceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence 6899999999654554433 345899987
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=8.1e-28 Score=226.49 Aligned_cols=246 Identities=14% Similarity=0.155 Sum_probs=184.3
Q ss_pred cceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCc--------ceeeeeecCCCCccccccccccccccccccCCCCCc-
Q 014005 114 EKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQ--------KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA- 183 (432)
Q Consensus 114 ~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 183 (432)
+.|++++| +|+ +.+|++++.||.|++||+... .......+..|. ..+.+++|+|++.
T Consensus 129 ~~v~~l~~--~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~-----------~~v~~l~~~~~~~~ 195 (430)
T 2xyi_A 129 GEVNRARY--MPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ-----------KEGYGLSWNPNLNG 195 (430)
T ss_dssp SCCSEEEE--ETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS-----------SCCCCEEECTTSTT
T ss_pred CcEEEEEE--CCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC-----------CCeEEEEeCCCCCC
Confidence 89999999 676 679999999999999999762 222333334444 7899999999988
Q ss_pred ceecceeeccceEEEEeecccccc----eeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCC--ceeeE
Q 014005 184 HGYHLEWTENMATKIANVGNSVHA----RCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISD--QCFNI 255 (432)
Q Consensus 184 ~~~~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~--~~~~~ 255 (432)
++++++. +|.|++|++...... .....+ .+|...|.+++|+| ++..++++ .|+.|++||++... .....
T Consensus 196 ~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~ 272 (430)
T 2xyi_A 196 YLLSASD--DHTICLWDINATPKEHRVIDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT 272 (430)
T ss_dssp EEEEECT--TSCEEEEETTSCCBGGGEEECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred eEEEEeC--CCeEEEEeCCCCCCCCceeccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence 8888888 999999999852111 224455 68999999999999 67788888 99999999999432 34444
Q ss_pred eecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEE
Q 014005 256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (432)
Q Consensus 256 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~ 335 (432)
+ ..|...|++++|+|++..+|++|+.||.|++||+++.... +..+..| ...|.+++|
T Consensus 273 ~-------~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~~~~~~h-------------~~~v~~i~~ 329 (430)
T 2xyi_A 273 V-------DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---LHSFESH-------------KDEIFQVQW 329 (430)
T ss_dssp E-------ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SEEEECC-------------SSCEEEEEE
T ss_pred e-------ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC---eEEeecC-------------CCCEEEEEE
Confidence 3 6888999999999998558999999999999999974432 5777776 789999999
Q ss_pred cCCCC-EEEEe-eCCeEEEEecCc--------------ceeEeecceeeeehhhhhcccccccccce-eeEEEEeecccc
Q 014005 336 ANDGQ-HLLSR-DYMNLKVFRYEP--------------VMTLSFCGIYVWILRQLQHSRFMSIYALS-CVIYIITTLYLI 398 (432)
Q Consensus 336 s~dg~-~l~s~-~~~~i~iwd~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~ 398 (432)
+|+++ +|+++ .++.|++||+.. ...+..+.. ....+..+.... ....+++++.||
T Consensus 330 sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------h~~~v~~~~~~p~~~~~l~s~s~dg 401 (430)
T 2xyi_A 330 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWIICSVSEDN 401 (430)
T ss_dssp CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCC--------CSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCC--------CCCCceEEEECCCCCCEEEEEECCC
Confidence 99996 57776 459999999922 112222211 111222222222 223688999999
Q ss_pred eeeeeccC
Q 014005 399 NLSALSAG 406 (432)
Q Consensus 399 ~i~~~~~~ 406 (432)
.|.+|+..
T Consensus 402 ~i~iw~~~ 409 (430)
T 2xyi_A 402 IMQVWQMA 409 (430)
T ss_dssp EEEEEEEC
T ss_pred CEEEeEcc
Confidence 99999954
No 114
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=8.8e-29 Score=227.71 Aligned_cols=264 Identities=14% Similarity=0.193 Sum_probs=192.4
Q ss_pred hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005 6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS 85 (432)
Q Consensus 6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (432)
..+.....|++... +.........|.+.|++++|+|++++|++|+.||.|++||+++++..
T Consensus 61 ~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~------------------ 121 (368)
T 3mmy_A 61 SWANDVRCWEVQDS-GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI------------------ 121 (368)
T ss_dssp ETTSEEEEEEECTT-SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE------------------
T ss_pred CCCCcEEEEEcCCC-CceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce------------------
Confidence 34455667776531 11111233468999999999999999999999999999999886532
Q ss_pred cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccc
Q 014005 86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN 165 (432)
Q Consensus 86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 165 (432)
.+.+|. ..|.+++|+|++++.+|++++.||.|++||+.+++........
T Consensus 122 ----------~~~~~~------------~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--------- 170 (368)
T 3mmy_A 122 ----------QIAQHD------------APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP--------- 170 (368)
T ss_dssp ----------EEEECS------------SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS---------
T ss_pred ----------eecccc------------CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC---------
Confidence 456688 8999999988899999999999999999999887644333221
Q ss_pred ccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCE----EEEE-cCCe
Q 014005 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET----FVSA-DDLR 240 (432)
Q Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l~~~-~d~~ 240 (432)
..+.++.+. ...++.+.. ++.+.+|+++.. ..........+...+.++++.++... ++++ .|+.
T Consensus 171 -----~~~~~~~~~--~~~~~~~~~--~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~ 239 (368)
T 3mmy_A 171 -----ERCYCADVI--YPMAVVATA--ERGLIVYQLENQ--PSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR 239 (368)
T ss_dssp -----SCEEEEEEE--TTEEEEEEG--GGCEEEEECSSS--CEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE
T ss_pred -----CCceEEEec--CCeeEEEeC--CCcEEEEEeccc--cchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc
Confidence 233333333 335555555 889999999843 22222222344556666666655544 8888 9999
Q ss_pred EEEEeCCCCC--ceeeEeecCCCCcCCCCc------------ceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccc
Q 014005 241 INLWNLEISD--QCFNIVDMKPSNMDDLTE------------VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS 306 (432)
Q Consensus 241 i~lwd~~~~~--~~~~~~~~~~~~~~~~~~------------~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 306 (432)
|++||++... .....+ ..|.. .|++++|+|++ ++|++++.||.|++||+++++.
T Consensus 240 i~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~---- 307 (368)
T 3mmy_A 240 VAIHYINPPNPAKDNFTF-------KCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDARTK---- 307 (368)
T ss_dssp EEEEESSCSCHHHHSEEE-------ECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEE----
T ss_pred EEEEecCCCCccccceee-------eeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEECCCCcE----
Confidence 9999999332 233333 44443 79999999999 9999999999999999998876
Q ss_pred ceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005 307 ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 307 ~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~ 355 (432)
+..+..| ...|.+++|+|+|++|++++ |+..+.|++
T Consensus 308 ~~~~~~~-------------~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 308 LKTSEQL-------------DQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EEECCCC-------------SSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred EEEecCC-------------CCCceEEEECCCCCeEEEEecccccccccc
Confidence 5778786 78999999999999999974 354444444
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=2.5e-26 Score=213.58 Aligned_cols=268 Identities=10% Similarity=0.096 Sum_probs=200.7
Q ss_pred cchhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccc
Q 014005 3 LNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQM 81 (432)
Q Consensus 3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 81 (432)
+....+.....|....- .....+.+...+.+++|+|+|++| ++++.|+.|++||+.+++..
T Consensus 6 vs~~~d~~v~v~d~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~-------------- 67 (391)
T 1l0q_A 6 IANSESDNISVIDVTSN----KVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI-------------- 67 (391)
T ss_dssp EEETTTTEEEEEETTTT----EEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--------------
T ss_pred EEcCCCCEEEEEECCCC----eEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE--------------
Confidence 33444555666765421 112234455679999999999976 67779999999999876532
Q ss_pred cccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCc
Q 014005 82 DFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPF 160 (432)
Q Consensus 82 ~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~ 160 (432)
..+..+ ..+.+++| +|++++++.+ +.++.|++||+.+++........
T Consensus 68 -------------~~~~~~-------------~~v~~~~~--spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---- 115 (391)
T 1l0q_A 68 -------------ATVPAG-------------SSPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG---- 115 (391)
T ss_dssp -------------EEEECS-------------SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS----
T ss_pred -------------EEEECC-------------CCccceEE--CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC----
Confidence 344433 57899999 8999987655 56799999999988754433321
Q ss_pred cccccccccccccccccCCCCCcce-ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEE-EEE-c
Q 014005 161 VSSENTLLAEKNFMNEHNPPSFAHG-YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-D 237 (432)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~-~ 237 (432)
..+..++|++++..+ +++.. ++.+++||+. ..+.+..+ .. ...+.+++|+|+++.+ +++ .
T Consensus 116 ----------~~~~~~~~s~dg~~l~~~~~~--~~~v~~~d~~---~~~~~~~~-~~-~~~~~~~~~~~dg~~l~~~~~~ 178 (391)
T 1l0q_A 116 ----------KSPLGLALSPDGKKLYVTNNG--DKTVSVINTV---TKAVINTV-SV-GRSPKGIAVTPDGTKVYVANFD 178 (391)
T ss_dssp ----------SSEEEEEECTTSSEEEEEETT--TTEEEEEETT---TTEEEEEE-EC-CSSEEEEEECTTSSEEEEEETT
T ss_pred ----------CCcceEEECCCCCEEEEEeCC--CCEEEEEECC---CCcEEEEE-ec-CCCcceEEECCCCCEEEEEeCC
Confidence 467889999999877 56655 8999999998 66777776 33 3567999999999987 466 8
Q ss_pred CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe---CCCeEEEEEccccccccccceeecccc
Q 014005 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAA 314 (432)
Q Consensus 238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~ 314 (432)
++.|++||++ .++....+ .+...+.+++|+|++ +.|++++ .++.|++||+++++. +..+..|
T Consensus 179 ~~~v~~~d~~-~~~~~~~~--------~~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~----~~~~~~~- 243 (391)
T 1l0q_A 179 SMSISVIDTV-TNSVIDTV--------KVEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKI----TARIPVG- 243 (391)
T ss_dssp TTEEEEEETT-TTEEEEEE--------ECSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEE----EEEEECC-
T ss_pred CCEEEEEECC-CCeEEEEE--------ecCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeE----EEEEecC-
Confidence 9999999999 56666554 245578999999999 7787777 689999999998775 5666664
Q ss_pred cccCCccceeeeecceeEEEEcCCCCEE-EEee-CCeEEEEec---CcceeEeecc
Q 014005 315 ESHGSKSFFTEIIASISDIKFANDGQHL-LSRD-YMNLKVFRY---EPVMTLSFCG 365 (432)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l-~s~~-~~~i~iwd~---~~~~~~~~~~ 365 (432)
..+.+++|+|+|++| +++. ++.|++||+ +.+..+..+.
T Consensus 244 -------------~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~ 286 (391)
T 1l0q_A 244 -------------PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGK 286 (391)
T ss_dssp -------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred -------------CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence 467899999999988 4554 599999999 5555565553
No 116
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=5.2e-28 Score=225.86 Aligned_cols=229 Identities=17% Similarity=0.223 Sum_probs=173.0
Q ss_pred eeeecCCccccccchhhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccc
Q 014005 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (432)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 173 (432)
..+.+|. +.|.+++| +| ++++|++++.||.|++||+.++.........................|
T Consensus 37 ~~~~~h~------------~~v~~~~~--s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (408)
T 4a11_B 37 DVERIHG------------GGINTLDI--EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV 102 (408)
T ss_dssp EECCCCS------------SCEEEEEE--CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE
T ss_pred eeeeccC------------CcEEEEEE--ecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcE
Confidence 5677898 99999999 89 999999999999999999987753322211000000000000123789
Q ss_pred ccccCCC-CCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC---CCEEEEE-cCCeEEEEeCCC
Q 014005 174 MNEHNPP-SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEI 248 (432)
Q Consensus 174 ~~~~~~~-~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~-~d~~i~lwd~~~ 248 (432)
.+++|+| ++.++++++. ++.+++||+. ..++...+ .+...+.++.+++. +.+++++ .|+.|++||++
T Consensus 103 ~~~~~~~~~~~~l~s~~~--d~~i~iwd~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~- 174 (408)
T 4a11_B 103 ETVQWYPHDTGMFTSSSF--DKTLKVWDTN---TLQTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK- 174 (408)
T ss_dssp EEEEECTTCTTCEEEEET--TSEEEEEETT---TTEEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS-
T ss_pred EEEEEccCCCcEEEEEeC--CCeEEEeeCC---CCccceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC-
Confidence 9999999 7778888888 9999999998 66777766 36778999999985 4489999 99999999999
Q ss_pred CCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccc--ccCCccceeee
Q 014005 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE--SHGSKSFFTEI 326 (432)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~--~~~~~~~~~~~ 326 (432)
.+.....+ ..|...|++++|+|++..+|++++.||.|++||++++..+ ...+..|.. ..........|
T Consensus 175 ~~~~~~~~-------~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 244 (408)
T 4a11_B 175 SGSCSHIL-------QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC---LITLDQHNGKKSQAVESANTAH 244 (408)
T ss_dssp SSCCCEEE-------CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC---SEECCTTTTCSCCCTTTSSCSC
T ss_pred Ccceeeee-------cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc---cccccccccccceeeccccccc
Confidence 56666655 7899999999999998447999999999999999987643 344433211 11111223445
Q ss_pred ecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005 327 IASISDIKFANDGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 327 ~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~ 355 (432)
...|.+++|+|+|++|++++ ++.|++||+
T Consensus 245 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 274 (408)
T 4a11_B 245 NGKVNGLCFTSDGLHLLTVGTDNRMRLWNS 274 (408)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred cCceeEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 78999999999999999975 499999999
No 117
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=2.3e-27 Score=216.26 Aligned_cols=216 Identities=11% Similarity=0.033 Sum_probs=171.7
Q ss_pred eeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCCCccccccccccccc
Q 014005 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKN 172 (432)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 172 (432)
..+.+|. +.|++++| +|++++|++++.||.|++||+.++. ......+..+. ..
T Consensus 5 ~~~~gH~------------~~v~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-----------~~ 59 (351)
T 3f3f_A 5 PFDSGHD------------DLVHDVVY--DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHD-----------SS 59 (351)
T ss_dssp CEECCCS------------SCEEEEEE--CSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCS-----------SC
T ss_pred ccCcccc------------cceeEEEE--cCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCC-----------Cc
Confidence 3567898 99999999 8999999999999999999998653 23333444455 78
Q ss_pred cccccCCC--CCcceecceeeccceEEEEeeccccc------ceeeEEeecCCCCCeeEEEeCCC--CCEEEEE-cCCeE
Q 014005 173 FMNEHNPP--SFAHGYHLEWTENMATKIANVGNSVH------ARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRI 241 (432)
Q Consensus 173 i~~~~~~~--~~~~~~~~~~~~~~~v~i~d~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~-~d~~i 241 (432)
|.+++|++ ++.++++++. |+.|++||++.... .++...+ ..|...|.+++|+|+ +++++++ .|+.|
T Consensus 60 v~~~~~~~~~d~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v 136 (351)
T 3f3f_A 60 IVAIDWASPEYGRIIASASY--DKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGIL 136 (351)
T ss_dssp EEEEEECCGGGCSEEEEEET--TSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEE
T ss_pred EEEEEEcCCCCCCEEEEEcC--CCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcE
Confidence 99999999 5899999998 99999999984311 1556666 789999999999999 9999999 99999
Q ss_pred EEEeCCCCCceeeEee------cCCCCcCCCCcceEEEEEcCC---CCcEEEEEeCCCeEEEEEccccccccccceeecc
Q 014005 242 NLWNLEISDQCFNIVD------MKPSNMDDLTEVITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312 (432)
Q Consensus 242 ~lwd~~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 312 (432)
++||++ .......+. ........|...+.+++|+|+ + .+|++++.|+.+.+|+...++.. ....+.+
T Consensus 137 ~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 212 (351)
T 3f3f_A 137 RLYDAL-EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLH--VAAKLPG 212 (351)
T ss_dssp EEEECS-STTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEE--EEEECCC
T ss_pred EEecCC-ChHHhccccccccccccccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCcee--eeeecCC
Confidence 999998 444332221 111122367888999999997 6 89999999999988887766531 1355666
Q ss_pred cccccCCccceeeeecceeEEEEcCCC----CEEEEee-CCeEEEEec
Q 014005 313 AAESHGSKSFFTEIIASISDIKFANDG----QHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 313 h~~~~~~~~~~~~~~~~v~~~~~s~dg----~~l~s~~-~~~i~iwd~ 355 (432)
| ...|.+++|+|++ ++|++|+ |+.|++||+
T Consensus 213 h-------------~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~ 247 (351)
T 3f3f_A 213 H-------------KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 247 (351)
T ss_dssp C-------------CSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEE
T ss_pred C-------------CcceeEEEECCCCCCcceEEEEEcCCCeEEEEeC
Confidence 5 7899999999998 7899975 499999999
No 118
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.1e-28 Score=243.26 Aligned_cols=255 Identities=13% Similarity=0.037 Sum_probs=192.4
Q ss_pred eeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccc
Q 014005 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (432)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 174 (432)
..+.+|. +.|++++| +|+++++++|+.||.|++||+..+.......+..|. +.|.
T Consensus 3 ~~l~gH~------------~~V~~l~~--s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~-----------~~V~ 57 (753)
T 3jro_A 3 VIANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE-----------GPVW 57 (753)
T ss_dssp -----CC------------CCEEEECC--CSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCS-----------SCEE
T ss_pred eecccCc------------ceeEEEEE--CCCCCeEEEEECCCcEEEEecCCCCCccceeccCCc-----------CceE
Confidence 4678898 99999999 899999999999999999999866555555666666 8899
Q ss_pred cccCCCC--CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCCCC
Q 014005 175 NEHNPPS--FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEIS 249 (432)
Q Consensus 175 ~~~~~~~--~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~-~d~~i~lwd~~~~ 249 (432)
+++|+++ +.++++++. ||.|++||+... .......+ .+|...|.+++|+|+ ++.+++| .||.|++||++.
T Consensus 58 ~l~~s~~~~~~~l~s~s~--Dg~I~vwd~~~~-~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~- 132 (753)
T 3jro_A 58 RVDWAHPKFGTILASCSY--DGKVLIWKEENG-RWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE- 132 (753)
T ss_dssp EEEECCTTSCSEEEEEET--TSCEEEEEEETT-EEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS-
T ss_pred EEEecCCCCCCEEEEEeC--CCeEEEEECCCC-cccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec-
Confidence 9999988 899999998 999999999842 22255666 789999999999999 9999999 999999999984
Q ss_pred CceeeEeecCCCCcCCCCcceEEEEEcC-------------CCCcEEEEEeCCCeEEEEEccccccccccceeecccccc
Q 014005 250 DQCFNIVDMKPSNMDDLTEVITSAEFHP-------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 316 (432)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p-------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~ 316 (432)
+...... ...+|...|.+++|+| ++ .+|++|+.||.|++||++++.........+.+|
T Consensus 133 ~~~~~~~-----~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h--- 203 (753)
T 3jro_A 133 NGTTSPI-----IIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--- 203 (753)
T ss_dssp SSCCCCE-----EEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEECCC---
T ss_pred CCCccee-----EeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeeecCC---
Confidence 3221111 2368889999999999 46 899999999999999999875322235666776
Q ss_pred cCCccceeeeecceeEEEEcCC---CCEEEEee-CCeEEEEecCcc-----eeEeecceeeeehhhhhccccccccccee
Q 014005 317 HGSKSFFTEIIASISDIKFAND---GQHLLSRD-YMNLKVFRYEPV-----MTLSFCGIYVWILRQLQHSRFMSIYALSC 387 (432)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~s~d---g~~l~s~~-~~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (432)
...|.+++|+|+ |++|++|+ ||.|++||+..- ........ ....+..+.....
T Consensus 204 ----------~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~--------~~~~v~~l~~spd 265 (753)
T 3jro_A 204 ----------SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEK--------FPDVLWRASWSLS 265 (753)
T ss_dssp ----------SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSC--------CSSCCCCEEECTT
T ss_pred ----------CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCC--------CCCceEEEEEcCC
Confidence 789999999999 89999975 499999999211 11111000 1112222222222
Q ss_pred eEEEEeecccceeeeeccC
Q 014005 388 VIYIITTLYLINLSALSAG 406 (432)
Q Consensus 388 ~~~~~~g~~~~~i~~~~~~ 406 (432)
..++++|+.||.|.+|+..
T Consensus 266 g~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 266 GNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp TCCEEEECSSSCEECCBCC
T ss_pred CCEEEEEcCCCEEEEEecC
Confidence 3358899999999999943
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4e-27 Score=215.01 Aligned_cols=231 Identities=13% Similarity=0.098 Sum_probs=169.1
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecc
Q 014005 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN 203 (432)
Q Consensus 124 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~ 203 (432)
.+++.++++|+.||.|++||+.+++...... ...+..+.++|. +++++. |+.+++|+...
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---------------~~~v~~~~~~~~---~~s~s~--D~~i~~w~~~~ 104 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTIT---------------TPNPRTGGEHPA---IISRGP--CNRLLLLYPGN 104 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEEE---------------EECCCTTCCCCS---EEEECS--TTEEEEEETTT
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEEe---------------cCCceeeeeCCc---eEEecC--CCeEEEEEccC
Confidence 3567899999999999999999887433322 157888889888 777777 99999997763
Q ss_pred c------ccceeeEEeecCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEE
Q 014005 204 S------VHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 274 (432)
Q Consensus 204 ~------~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 274 (432)
. ...+.++.+..+|...|.+++|+| ++++++++ .|++|++||++ .+...... ...+...+++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~------~~~~~~~i~~~~ 177 (343)
T 3lrv_A 105 QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE-DDSQYIVH------SAKSDVEYSSGV 177 (343)
T ss_dssp EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS-SSCEEEEE------CCCSSCCCCEEE
T ss_pred ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC-CCcEEEEE------ecCCCCceEEEE
Confidence 2 134445555457778999999999 99999999 99999999999 56555443 134555799999
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc-cccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEE
Q 014005 275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVF 353 (432)
Q Consensus 275 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iw 353 (432)
|+|++ .+|++|+.||.|++||+++++.. ...+.. | ..+|.+++|+|+|.+|++++++.|++|
T Consensus 178 ~~pdg-~~lasg~~dg~i~iwd~~~~~~~---~~~~~~~h-------------~~~v~~l~fs~~g~~l~s~~~~~v~iw 240 (343)
T 3lrv_A 178 LHKDS-LLLALYSPDGILDVYNLSSPDQA---SSRFPVDE-------------EAKIKEVKFADNGYWMVVECDQTVVCF 240 (343)
T ss_dssp ECTTS-CEEEEECTTSCEEEEESSCTTSC---CEECCCCT-------------TSCEEEEEECTTSSEEEEEESSBEEEE
T ss_pred ECCCC-CEEEEEcCCCEEEEEECCCCCCC---ccEEeccC-------------CCCEEEEEEeCCCCEEEEEeCCeEEEE
Confidence 99999 99999999999999999988752 156666 6 789999999999999999878899999
Q ss_pred ec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecc-cceeeeec
Q 014005 354 RY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLY-LINLSALS 404 (432)
Q Consensus 354 d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~i~~~~ 404 (432)
|+ +.+..+..... ........ .+.......++++|+. ++.+.+|+
T Consensus 241 d~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 241 DLRKDVGTLAYPTYTI-----PEFKTGTV-TYDIDDSGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp ETTSSTTCBSSCCCBC----------CCE-EEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EcCCCCcceeeccccc-----ccccccce-EEEECCCCCEEEEecCCCCcEEEEE
Confidence 99 33333332110 00000000 1111222235777776 99999997
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.3e-26 Score=203.77 Aligned_cols=198 Identities=13% Similarity=0.073 Sum_probs=139.6
Q ss_pred cceeEEEEEEcCC----CCEEEEEeC--------------------CCeEEEEEccC-cceeeeeecCCCCccccccccc
Q 014005 114 EKINRVRWCAAPN----GSMFILSTN--------------------DKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLL 168 (432)
Q Consensus 114 ~~v~~l~~~~s~~----~~~l~s~~~--------------------d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~ 168 (432)
..|..+++ +|| ++.+++++. |+.|++|++.. ++... ....+.
T Consensus 112 ~~v~sla~--spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~--s~~~~~--------- 178 (356)
T 2w18_A 112 REIRALFC--SSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKE--NQFLMP--------- 178 (356)
T ss_dssp EEEEEECC--------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEE--EEEECC---------
T ss_pred cceEEEEE--CCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceee--eeccCC---------
Confidence 56778888 677 777777653 66666666632 33211 111222
Q ss_pred cccccccccCCC---CCcceecceeeccceEEEEeecccccceeeEEeecCCC---CCeeEEEeCCCCCEE---------
Q 014005 169 AEKNFMNEHNPP---SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHD---FNINSISNNSDCETF--------- 233 (432)
Q Consensus 169 ~~~~i~~~~~~~---~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l--------- 233 (432)
..+..++|++ ++..+++++. |++|+|||+. ++++++++ .+|. ..+.+++|+|+|.++
T Consensus 179 --~~v~~l~fs~~~g~~~~LaSgS~--D~TIkIWDl~---TGk~l~tL-~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~ 250 (356)
T 2w18_A 179 --PEETILTFAEVQGMQEALLGTTI--MNNIVIWNLK---TGQLLKKM-HIDDSYQASVCHKAYSEMGLLFIVLSHPCAK 250 (356)
T ss_dssp --CSSCEEEEEEEETSTTEEEEEET--TSEEEEEETT---TCCEEEEE-ECCC---CCCEEEEEEETTEEEEEEC-----
T ss_pred --CceeeEEeeccCCCCceEEEecC--CCcEEEEECC---CCcEEEEE-cCCCcceeeeEEEEECCCCCEEEEeccCCCc
Confidence 4566677777 6688888888 9999999999 78899988 4443 367778999999876
Q ss_pred ---EEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccccee
Q 014005 234 ---VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 309 (432)
Q Consensus 234 ---~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 309 (432)
++| .|++|++||.. ++..+.++.... ..+|...+.+..++ + .++|+++.|++|+|||+++++. +.+
T Consensus 251 w~laSGs~D~tIklWd~~-tgk~l~v~~~~~--p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~----l~t 320 (356)
T 2w18_A 251 ESESLRSPVFQLIVINPK-TTLSVGVMLYCL--PPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQC----TAL 320 (356)
T ss_dssp -------CCEEEEEEETT-TTEEEEEEEECC--CTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCSE----EEE
T ss_pred ceeeccCCCcEEEEEECC-CCEEEEEEEeec--cCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCcE----EEE
Confidence 457 79999999998 676665431111 13665555544444 6 8899999999999999999986 688
Q ss_pred ecccccccCCccceeeeecce-eEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005 310 LRDAAESHGSKSFFTEIIASI-SDIKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 310 ~~~h~~~~~~~~~~~~~~~~v-~~~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
+++| ...+ ..++|||||++|++|+. ++|+|||+
T Consensus 321 L~gH-------------~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 321 LPPV-------------SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ECCC---------------CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ecCC-------------CCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 8887 4544 46899999999999855 99999985
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=8.1e-27 Score=219.89 Aligned_cols=283 Identities=6% Similarity=-0.021 Sum_probs=206.0
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
+.....+.+++|+|++.++++++.++.|++||+.+++... ......+.+|.
T Consensus 119 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~----------------------~~~~~~~~~~~------- 169 (433)
T 3bws_A 119 FKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVR----------------------LSPPEKYKKKL------- 169 (433)
T ss_dssp EECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEE----------------------ECCCHHHHTTC-------
T ss_pred EcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEee----------------------ecCcccccccC-------
Confidence 3345567799999988888889999999999998875320 00001345677
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..|.+++| ++++.++++++.|+.|++||+.+++...... .+. ..+.+++|+|++..++..
T Consensus 170 -----~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~--~~~-----------~~~~~~~~~~~~~~l~~~ 229 (433)
T 3bws_A 170 -----GFVETISI--PEHNELWVSQMQANAVHVFDLKTLAYKATVD--LTG-----------KWSKILLYDPIRDLVYCS 229 (433)
T ss_dssp -----CEEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCCEEEEEE--CSS-----------SSEEEEEEETTTTEEEEE
T ss_pred -----CceeEEEE--cCCCEEEEEECCCCEEEEEECCCceEEEEEc--CCC-----------CCeeEEEEcCCCCEEEEE
Confidence 88999999 8999999999999999999998876433322 222 568889999999887544
Q ss_pred -eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c--------CCeEEEEeCCCCCceeeEeec
Q 014005 189 -EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--------DLRINLWNLEISDQCFNIVDM 258 (432)
Q Consensus 189 -~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~--------d~~i~lwd~~~~~~~~~~~~~ 258 (432)
.. ++.+++||++ .++.+..+ . ....+.+++|+|+++.++++ . |+.|++||++ +++....+
T Consensus 230 ~~~--~~~i~~~d~~---~~~~~~~~-~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~-~~~~~~~~-- 299 (433)
T 3bws_A 230 NWI--SEDISVIDRK---TKLEIRKT-D-KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD-KEKLIDTI-- 299 (433)
T ss_dssp ETT--TTEEEEEETT---TTEEEEEC-C-CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT-TTEEEEEE--
T ss_pred ecC--CCcEEEEECC---CCcEEEEe-c-CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC-CCcEEeec--
Confidence 35 8899999998 66677666 3 34569999999999998877 4 6799999998 55555443
Q ss_pred CCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (432)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d 338 (432)
.+...+.+++|+|++..++++++.|+.|++||+.+++. ...+.. ...+.+++|+|+
T Consensus 300 ------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~----~~~~~~--------------~~~~~~~~~s~d 355 (433)
T 3bws_A 300 ------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV----QKSIPV--------------FDKPNTIALSPD 355 (433)
T ss_dssp ------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE----EEEEEC--------------SSSEEEEEECTT
T ss_pred ------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE----EEEecC--------------CCCCCeEEEcCC
Confidence 44557899999999844667778999999999998765 355543 467899999999
Q ss_pred CCEEEEeeC----------------CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccce
Q 014005 339 GQHLLSRDY----------------MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLIN 399 (432)
Q Consensus 339 g~~l~s~~~----------------~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 399 (432)
|++|++++. |.|++||+ +.+..+..+.. .....+..+....++++..|+.
T Consensus 356 g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~-----------~~~~~~s~dg~~l~~~~~~d~~ 424 (433)
T 3bws_A 356 GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQ-----------PTGLDVSPDNRYLVISDFLDHQ 424 (433)
T ss_dssp SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSS-----------EEEEEECTTSCEEEEEETTTTE
T ss_pred CCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCC-----------CceEEEcCCCCEEEEEECCCCe
Confidence 998887532 49999999 34444433221 1111111222233455556999
Q ss_pred eeeecc
Q 014005 400 LSALSA 405 (432)
Q Consensus 400 i~~~~~ 405 (432)
+.+|+.
T Consensus 425 i~v~~~ 430 (433)
T 3bws_A 425 IRVYRR 430 (433)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999984
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=3.8e-25 Score=205.54 Aligned_cols=261 Identities=7% Similarity=0.048 Sum_probs=194.8
Q ss_pred CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEc
Q 014005 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA 124 (432)
Q Consensus 45 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s 124 (432)
.++++++.|+.|++||+++++. ...+..|. .+.+++| +
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~---------------------------~~~~~~~~-------------~~~~~~~--s 40 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKV---------------------------TATIPVGS-------------NPMGAVI--S 40 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE---------------------------EEEEECSS-------------SEEEEEE--C
T ss_pred EEEEEcCCCCEEEEEECCCCeE---------------------------EEEeecCC-------------CcceEEE--C
Confidence 4678899999999999988653 35566664 5899999 8
Q ss_pred CCCCEE-EEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecc
Q 014005 125 PNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN 203 (432)
Q Consensus 125 ~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~ 203 (432)
|+++++ ++++.|+.|++||+.+++........ ..+.+++|+|++.+++.+.. .++.|++||+.
T Consensus 41 ~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~--------------~~v~~~~~spdg~~l~~~~~-~~~~v~v~d~~- 104 (391)
T 1l0q_A 41 PDGTKVYVANAHSNDVSIIDTATNNVIATVPAG--------------SSPQGVAVSPDGKQVYVTNM-ASSTLSVIDTT- 104 (391)
T ss_dssp TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--------------SSEEEEEECTTSSEEEEEET-TTTEEEEEETT-
T ss_pred CCCCEEEEECCCCCeEEEEECCCCeEEEEEECC--------------CCccceEECCCCCEEEEEEC-CCCEEEEEECC-
Confidence 999876 56678999999999988755443322 46889999999998765432 16899999998
Q ss_pred cccceeeEEeecCCCCCeeEEEeCCCCCEE-EEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCc
Q 014005 204 SVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 281 (432)
Q Consensus 204 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 281 (432)
..+.+..+ . +...+.+++|+|+++.+ +++ .|+.|++||++ +++....+ ..+ ..+.+++|+|++ +
T Consensus 105 --~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~-------~~~-~~~~~~~~~~dg-~ 170 (391)
T 1l0q_A 105 --SNTVAGTV-K-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINTV-------SVG-RSPKGIAVTPDG-T 170 (391)
T ss_dssp --TTEEEEEE-E-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE-------ECC-SSEEEEEECTTS-S
T ss_pred --CCeEEEEE-e-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEEEE-------ecC-CCcceEEECCCC-C
Confidence 66677666 3 44578999999999987 567 89999999998 66666655 333 447999999999 6
Q ss_pred EE-EEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee----CCeEEEEec-
Q 014005 282 LL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKVFRY- 355 (432)
Q Consensus 282 ~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~----~~~i~iwd~- 355 (432)
.| ++++.++.|++||+++++. ...+.. ...+.+++|+|+|++|++++ ++.|++||+
T Consensus 171 ~l~~~~~~~~~v~~~d~~~~~~----~~~~~~--------------~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 171 KVYVANFDSMSISVIDTVTNSV----IDTVKV--------------EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG 232 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE----EEEEEC--------------SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred EEEEEeCCCCEEEEEECCCCeE----EEEEec--------------CCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence 55 6778899999999998765 455544 36788999999999888753 499999999
Q ss_pred --CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005 356 --EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG 406 (432)
Q Consensus 356 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 406 (432)
+++..+..+.. ..+..+..+....+++++.++.+.+|+..
T Consensus 233 ~~~~~~~~~~~~~-----------~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 233 TNKITARIPVGPD-----------PAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp TTEEEEEEECCSS-----------EEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CCeEEEEEecCCC-----------ccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 44455544331 11111222222345788899999999943
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=4.2e-25 Score=208.14 Aligned_cols=239 Identities=11% Similarity=0.084 Sum_probs=191.4
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..|.+.|.+++|+|+|+++++++.|+.|++||+++++. ...+..|.
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~---------------------------~~~~~~~~------- 211 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY---------------------------KATVDLTG------- 211 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEECSS-------
T ss_pred cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE---------------------------EEEEcCCC-------
Confidence 36788999999999999999999999999999987653 35667787
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
..+.+++| +|++++++++ +.|+.|++||+.+++..... ..+ ..+..++++|++..++.
T Consensus 212 -----~~~~~~~~--~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~------------~~~~~~~~~~~g~~l~~ 270 (433)
T 3bws_A 212 -----KWSKILLY--DPIRDLVYCSNWISEDISVIDRKTKLEIRKT--DKI------------GLPRGLLLSKDGKELYI 270 (433)
T ss_dssp -----SSEEEEEE--ETTTTEEEEEETTTTEEEEEETTTTEEEEEC--CCC------------SEEEEEEECTTSSEEEE
T ss_pred -----CCeeEEEE--cCCCCEEEEEecCCCcEEEEECCCCcEEEEe--cCC------------CCceEEEEcCCCCEEEE
Confidence 88999999 8899888555 47999999999887643322 221 45788999999998888
Q ss_pred ceee------ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEE-EEE-cCCeEEEEeCCCCCceeeEeecC
Q 014005 188 LEWT------ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMK 259 (432)
Q Consensus 188 ~~~~------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~-~d~~i~lwd~~~~~~~~~~~~~~ 259 (432)
+... .++.|++||+. .++....+ .+...+.+++|+|+++.+ +++ .|+.|++||++ +++....+
T Consensus 271 ~~~~~~~~~~~dg~i~~~d~~---~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~-~~~~~~~~--- 341 (433)
T 3bws_A 271 AQFSASNQESGGGRLGIYSMD---KEKLIDTI--GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK-EKKVQKSI--- 341 (433)
T ss_dssp EEEESCTTCSCCEEEEEEETT---TTEEEEEE--EEEECEEEEEECSSTTEEEEEETTTTEEEEEETT-TTEEEEEE---
T ss_pred EECCCCccccCCCeEEEEECC---CCcEEeec--cCCCCcceEEECCCCCEEEEEecCCCEEEEEECC-CCcEEEEe---
Confidence 7742 27899999998 55555554 455688999999999755 566 89999999999 56666554
Q ss_pred CCCcCCCCcceEEEEEcCCCCcEEEEEeC---------------CCeEEEEEccccccccccceeecccccccCCcccee
Q 014005 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSS---------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (432)
Q Consensus 260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 324 (432)
.+...+.+++|+|++ +++++++. ||.|++||+.+++. +..+..
T Consensus 342 -----~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~----~~~~~~------------ 399 (433)
T 3bws_A 342 -----PVFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV----KEFWEA------------ 399 (433)
T ss_dssp -----ECSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE----EEEEEC------------
T ss_pred -----cCCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCcE----EEEecC------------
Confidence 355678999999999 88887776 57999999998775 466655
Q ss_pred eeecceeEEEEcCCCCEEEEe-e-CCeEEEEec
Q 014005 325 EIIASISDIKFANDGQHLLSR-D-YMNLKVFRY 355 (432)
Q Consensus 325 ~~~~~v~~~~~s~dg~~l~s~-~-~~~i~iwd~ 355 (432)
...+.+++|+|+|++|+++ . ++.|++|++
T Consensus 400 --~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~ 430 (433)
T 3bws_A 400 --GNQPTGLDVSPDNRYLVISDFLDHQIRVYRR 430 (433)
T ss_dssp --SSSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred --CCCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence 3678999999999999875 3 599999997
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=3.9e-26 Score=200.83 Aligned_cols=219 Identities=9% Similarity=-0.001 Sum_probs=158.1
Q ss_pred CCcEEEEEEcCC----CCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc--ccccCCcceeeeeecCCcccc
Q 014005 32 VDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT--STSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 32 ~~~V~~~~fsp~----g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~h~~~~~ 105 (432)
...|++++|+|+ ++++++++.+ +++|++.+++.+ .....+++..+ +.+.|..+.+..+.+|.
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv------~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~---- 178 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLV------SSSGTLSDQQVEVMTFAEDGGGKENQFLMP---- 178 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEE------EEESSSTTCEEEEEEECTTSCEEEEEEECC----
T ss_pred ccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEE------EecccCCCCcEEEEEECCCCceeeeeccCC----
Confidence 347999999999 9999998754 788988765532 11123344444 56677777888888898
Q ss_pred ccchhhhhcceeEEEEEE-cCCCCEEEEEeCCCeEEEEEccCcceeeeee-cCCCCccccccccccccccccccCCCCCc
Q 014005 106 YLKSLEIEEKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQKVKKIKE-MDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~-s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 183 (432)
..+..++|+| .-++.+|++++.|++|++||+.++++..... ...+. ..+..++|+|++.
T Consensus 179 --------~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v-----------~~v~~vafSpdG~ 239 (356)
T 2w18_A 179 --------PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ-----------ASVCHKAYSEMGL 239 (356)
T ss_dssp --------CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC--------------CCCEEEEEEETTE
T ss_pred --------CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcce-----------eeeEEEEECCCCC
Confidence 8888999943 2278999999999999999999998544332 21111 3556668899888
Q ss_pred ceec------------ceeeccceEEEEeecccccceeeEEe----ecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 014005 184 HGYH------------LEWTENMATKIANVGNSVHARCQKVY----PHAHDFNINSISNNSDCETFVSA-DDLRINLWNL 246 (432)
Q Consensus 184 ~~~~------------~~~~~~~~v~i~d~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~ 246 (432)
++++ |+. |+++++||.. +++++..+ +.+|...+.+..++ +..+++| .|++|+|||+
T Consensus 240 ~lvs~s~~~~~w~laSGs~--D~tIklWd~~---tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl 312 (356)
T 2w18_A 240 LFIVLSHPCAKESESLRSP--VFQLIVINPK---TTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDL 312 (356)
T ss_dssp EEEEEC------------C--CEEEEEEETT---TTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred EEEEeccCCCcceeeccCC--CcEEEEEECC---CCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEEC
Confidence 7643 444 8999999998 66666554 24666555444443 7789999 8999999999
Q ss_pred CCCCceeeEeecCCCCcCCCCcceE-EEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005 247 EISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSSSRGFVRLVDM 297 (432)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~~~~~dg~i~iwd~ 297 (432)
+ +++++.++ .+|...+. .++|+|++ ++|++|+.|++|+|||+
T Consensus 313 ~-tGk~l~tL-------~gH~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 313 L-LGQCTALL-------PPVSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp T-TCSEEEEE-------CCC--CCCCEEEECSSS-SEEEEECTTSCEEEEEE
T ss_pred C-CCcEEEEe-------cCCCCCeEEEEEECCCC-CEEEEEECCCcEEEecC
Confidence 9 78888876 77876554 68999999 99999999999999996
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=3.1e-25 Score=206.22 Aligned_cols=244 Identities=5% Similarity=-0.073 Sum_probs=155.3
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCccee---eeeecCCCCccccccccccccccccccCCC--------CCcceecceeec
Q 014005 124 APNGSMFILSTNDKTIKLWKVRDQKVK---KIKEMDHFPFVSSENTLLAEKNFMNEHNPP--------SFAHGYHLEWTE 192 (432)
Q Consensus 124 s~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~ 192 (432)
++++.++++++.|++|++||+..+... .+..+..|. +.|.+++|+| ++.++++++.
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~-----------~~v~~v~~~p~~~~~~~~d~~~las~s~-- 164 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHH-----------NFVNDIDIADVYSADNRLAEQVIASVGD-- 164 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCS-----------SCEEEEEEEEEECTTCSEEEEEEEEEET--
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCC-----------CceEEEEEccccccccCCCCCEEEEEEC--
Confidence 566778999999999999999887643 234456676 8999999987 7889999998
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeec------------
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDM------------ 258 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~------------ 258 (432)
|+++++||+. ...+...+ ..|...+.+++|+|++. +|++| .|++|++||++ .++.......
T Consensus 165 D~tv~~Wd~~---~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~-t~~~~~~~~~~~~~~~~~~~s~ 239 (393)
T 4gq1_A 165 DCTLIIWRLT---DEGPILAG-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWT-LNLSAEENSQTELVKNPWLLTL 239 (393)
T ss_dssp TSEEEEEEEE---TTEEEEEE-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETT-CCC----------CSCCCSEEE
T ss_pred CCeEEEEECC---CCceeeee-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECC-CCcccccccccCCcccceEEec
Confidence 9999999998 55566655 67889999999999875 68888 99999999998 3332221100
Q ss_pred ------CCCCcCCCCcceEEEEEc-CCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccce-----eee
Q 014005 259 ------KPSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF-----TEI 326 (432)
Q Consensus 259 ------~~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~-----~~~ 326 (432)
......+|...+.++.|+ |++ +.|++++.|+++++||++.++. ...+..|.......... ...
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~ 314 (393)
T 4gq1_A 240 NTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANND----YNEISDSTMKLGPKNLLPNVQGISL 314 (393)
T ss_dssp ESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-----------------------CCSCSEEEECS
T ss_pred ccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCC----CceEeeecCccccEEEccccccccc
Confidence 000124677889999987 788 9999999999999999998765 34444432111100000 000
Q ss_pred ecceeEEEEcC--CCCEEEEee-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeeccccee
Q 014005 327 IASISDIKFAN--DGQHLLSRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINL 400 (432)
Q Consensus 327 ~~~v~~~~~s~--dg~~l~s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i 400 (432)
........|+| ++.++++|+ |++|++||+ .++..+..|.. ++..+.++...-++++++.+|.+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~-----------~V~svafspdG~~LA~as~~Gv~ 383 (393)
T 4gq1_A 315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM-----------PIVDFCWHQDGSHLAIATEGSVL 383 (393)
T ss_dssp SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS-----------CEEEEEECTTSSEEEEEESSEEE
T ss_pred cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC-----------cEEEEEEcCCCCEEEEEeCCCeE
Confidence 11223334444 344666775 499999999 44444444432 33333333333467788776654
Q ss_pred e
Q 014005 401 S 401 (432)
Q Consensus 401 ~ 401 (432)
.
T Consensus 384 l 384 (393)
T 4gq1_A 384 L 384 (393)
T ss_dssp E
T ss_pred E
Confidence 3
No 126
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=4.5e-24 Score=195.53 Aligned_cols=245 Identities=10% Similarity=0.041 Sum_probs=169.9
Q ss_pred cEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005 34 IVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (432)
Q Consensus 34 ~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 112 (432)
.+..+++.++++++ ++|+.|++|+|||..+++.. ..+. |.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~---------------------------~~~~-~~----------- 100 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDV---------------------------SRIK-VD----------- 100 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEE---------------------------EEEE-CS-----------
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEE---------------------------EEEE-CC-----------
Confidence 57788999988887 56788899999999887532 3444 45
Q ss_pred hcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc-ceeeeeecCCCCccccccccccccccccccCCCCCcceec--ce
Q 014005 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH--LE 189 (432)
Q Consensus 113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~ 189 (432)
..|.+++| +++ .++++ .|+.|++||+.++ +.... +.. + ..+ +++++ .+++. |.
T Consensus 101 -~~v~~v~~--~~~--~~~~~-~~~~i~i~d~~~~~~~~~~--~~~-~-----------~~~--~~~s~--~~la~~sg~ 156 (355)
T 3vu4_A 101 -APVKDLFL--SRE--FIVVS-YGDVISVFKFGNPWKRITD--DIR-F-----------GGV--CEFSN--GLLVYSNEF 156 (355)
T ss_dssp -SCEEEEEE--CSS--EEEEE-ETTEEEEEESSTTCCBSSC--CEE-E-----------EEE--EEEET--TEEEEEESS
T ss_pred -CceEEEEE--cCC--EEEEE-EcCEEEEEECCCCceeeEE--ecc-C-----------Cce--EEEEc--cEEEEeCCC
Confidence 78999999 654 34444 4789999999876 32111 110 1 222 23333 44444 45
Q ss_pred eeccceEEEEeeccccc-----c-------ee-eEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe-EEEEeCCCCCceee
Q 014005 190 WTENMATKIANVGNSVH-----A-------RC-QKVYPHAHDFNINSISNNSDCETFVSA-DDLR-INLWNLEISDQCFN 254 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~-----~-------~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~-i~lwd~~~~~~~~~ 254 (432)
. +|.|++||+..... . .+ +..+ .+|.+.|.+++|+|++++|++| .|++ |++||++ +++++.
T Consensus 157 ~--~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~-~~~~~~ 232 (355)
T 3vu4_A 157 N--LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI-KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE-DGVLVR 232 (355)
T ss_dssp C--TTCEEEEECCC------------------CCEEE-CCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT-TCCEEE
T ss_pred c--CcEEEEEECCCCCccccccccccccccCcccEEE-EccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEE
Confidence 5 89999999984210 0 12 5667 8999999999999999999999 9998 9999999 677777
Q ss_pred EeecCCCCcC-C-CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccc----ccccCC-cc---cee
Q 014005 255 IVDMKPSNMD-D-LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA----AESHGS-KS---FFT 324 (432)
Q Consensus 255 ~~~~~~~~~~-~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h----~~~~~~-~~---~~~ 324 (432)
.+ . + |...|++++|+|++ ++|++++.|++|++||++.+.... ...+..+ ...... .. ...
T Consensus 233 ~~-------~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (355)
T 3vu4_A 233 EF-------RRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQDNK--RHALKGWINMKYFQSEWSLCNFKLSV 302 (355)
T ss_dssp EE-------ECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCSCCC--SEETTTTEECCCCCCSSCSEEEECCC
T ss_pred EE-------EcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCCCcc--cccccceeeccccccccceeEEEecc
Confidence 65 4 4 88999999999999 999999999999999998654211 1121110 000000 00 000
Q ss_pred eeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005 325 EIIASISDIKFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 325 ~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
........++|++||++|+++ .||.+++|++
T Consensus 303 ~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 303 DKHVRGCKIAWISESSLVVVWPHTRMIETFKV 334 (355)
T ss_dssp CTTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred CCCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 011234679999999999997 5599999998
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=4.2e-22 Score=186.22 Aligned_cols=232 Identities=11% Similarity=0.081 Sum_probs=174.6
Q ss_pred CCEEEEeccc------ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhccee
Q 014005 44 GDYLAVGDRG------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 117 (432)
Q Consensus 44 g~~l~t~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 117 (432)
+..++.++.+ ++|++||+++... ..+.+|. ..+.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~----------------------------~~l~~~~------------~~v~ 182 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ----------------------------FVVHRSP------------QPLM 182 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSC----------------------------EEEEEES------------SCEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCC----------------------------EEEeCCC------------Ccce
Confidence 5667666654 7999999975432 4677788 8999
Q ss_pred EEEEEEcCCCCEEEEEeCCC---eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee-cceeecc
Q 014005 118 RVRWCAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY-HLEWTEN 193 (432)
Q Consensus 118 ~l~~~~s~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~ 193 (432)
+++| +|+|++|++++.++ .|++||+.+++...+..+ . +.+..++|+|++..++ ++....+
T Consensus 183 ~~~~--Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~---~-----------~~~~~~~~spdg~~la~~~~~~g~ 246 (415)
T 2hqs_A 183 SPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF---P-----------RHNGAPAFSPDGSKLAFALSKTGS 246 (415)
T ss_dssp EEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC---S-----------SCEEEEEECTTSSEEEEEECTTSS
T ss_pred eeEE--cCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC---C-----------CcccCEEEcCCCCEEEEEEecCCC
Confidence 9999 99999999999875 999999998876554332 2 5688999999999887 4444223
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-CC--eEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DL--RINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
..|.+||+. .+++ ..+ ..|...+.+++|+|+|+.|+++ . ++ .|++||++ ++.. ..+ ..+...
T Consensus 247 ~~i~~~d~~---~~~~-~~l-~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~-~~~~-~~l-------~~~~~~ 312 (415)
T 2hqs_A 247 LNLYVMDLA---SGQI-RQV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN-GGAP-QRI-------TWEGSQ 312 (415)
T ss_dssp CEEEEEETT---TCCE-EEC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-SSCC-EEC-------CCSSSE
T ss_pred ceEEEEECC---CCCE-EeC-cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC-CCCE-EEE-------ecCCCc
Confidence 469999987 4444 344 5778899999999999988877 4 55 67777887 4433 222 456677
Q ss_pred eEEEEEcCCCCcEEEEEeCC---CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-
Q 014005 270 ITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR- 345 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~- 345 (432)
+.+++|+|+| ++|++++.+ ..|++||+.+++. ..+..| ..+.+++|+|||++|+++
T Consensus 313 ~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~~-----~~l~~~--------------~~~~~~~~spdg~~l~~~s 372 (415)
T 2hqs_A 313 NQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV-----QVLSST--------------FLDETPSLAPNGTMVIYSS 372 (415)
T ss_dssp EEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCE-----EECCCS--------------SSCEEEEECTTSSEEEEEE
T ss_pred ccCeEECCCC-CEEEEEECcCCceEEEEEECCCCCE-----EEecCC--------------CCcCCeEEcCCCCEEEEEE
Confidence 8999999999 888887754 5899999998764 455553 378899999999999885
Q ss_pred eCC---eEEEEec--CcceeEeecc
Q 014005 346 DYM---NLKVFRY--EPVMTLSFCG 365 (432)
Q Consensus 346 ~~~---~i~iwd~--~~~~~~~~~~ 365 (432)
.++ .|++||+ .....+..+.
T Consensus 373 ~~~~~~~l~~~d~~g~~~~~l~~~~ 397 (415)
T 2hqs_A 373 SQGMGSVLNLVSTDGRFKARLPATD 397 (415)
T ss_dssp EETTEEEEEEEETTSCCEEECCCSS
T ss_pred cCCCccEEEEEECCCCcEEEeeCCC
Confidence 334 8999999 5555555554
No 128
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=3.2e-21 Score=175.41 Aligned_cols=277 Identities=12% Similarity=0.153 Sum_probs=181.0
Q ss_pred hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEeccc-ceEEEEEec--CCcCCCCccccchhhhcccc
Q 014005 6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRG-GRVILFETV--GGKNTPNQHISRSELEKQMD 82 (432)
Q Consensus 6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~~~~~ 82 (432)
..+.....|++.. -++......+.+...+.+++|+|+|++|++++.+ +.|++|+++ +++.
T Consensus 12 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~---------------- 74 (343)
T 1ri6_A 12 PESQQIHVWNLNH-EGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL---------------- 74 (343)
T ss_dssp GGGTEEEEEEECT-TSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE----------------
T ss_pred CCCCeEEEEEECC-CCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce----------------
Confidence 3444556676642 1211223345677789999999999998888876 899999997 3321
Q ss_pred ccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeC-CCeEEEEEccCcce-eeeeecCCCCc
Q 014005 83 FTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKV-KKIKEMDHFPF 160 (432)
Q Consensus 83 ~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~-~~~~~~~~~~~ 160 (432)
..+..+..+ ..+..++| +|+++++++++. ++.|.+||+..+.. .........
T Consensus 75 ---------~~~~~~~~~-------------~~~~~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-- 128 (343)
T 1ri6_A 75 ---------TFAAESALP-------------GSLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-- 128 (343)
T ss_dssp ---------EEEEEEECS-------------SCCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC--
T ss_pred ---------eeccccccC-------------CCCcEEEE--cCCCCEEEEEecCCCeEEEEECCCCccccccccccCC--
Confidence 122233322 46788999 899998877764 88999999953321 122222211
Q ss_pred cccccccccccccccccCCCCCcceecce-eeccceEEEEeecccccceeeE--EeecCCCCCeeEEEeCCCCCEEE-EE
Q 014005 161 VSSENTLLAEKNFMNEHNPPSFAHGYHLE-WTENMATKIANVGNSVHARCQK--VYPHAHDFNINSISNNSDCETFV-SA 236 (432)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~v~i~d~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~-~~ 236 (432)
..+..++|+|++.+++.+. . ++.+.+||+.......... .+.......+..++|+|++++++ ++
T Consensus 129 ----------~~~~~~~~s~dg~~l~~~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~ 196 (343)
T 1ri6_A 129 ----------DGCHSANISPDNRTLWVPALK--QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN 196 (343)
T ss_dssp ----------TTBCCCEECTTSSEEEEEEGG--GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE
T ss_pred ----------CCceEEEECCCCCEEEEecCC--CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEe
Confidence 4578899999999887765 4 7899999998421222222 22133445788999999999765 45
Q ss_pred -cCCeEEEEeCCC-CCce--eeEeecCCCCcCCCCcceEEEEEcCCCCcEEE-EEeCCCeEEEEEcc--cccccccccee
Q 014005 237 -DDLRINLWNLEI-SDQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMR--QSALCDHSARI 309 (432)
Q Consensus 237 -~d~~i~lwd~~~-~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~i~iwd~~--~~~~~~~~~~~ 309 (432)
.++.+.+||++. .+.. ...+...+.. ......+..++|+|++ +.|+ ++..++.|.+||+. ++.. +.+..
T Consensus 197 ~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~i~~s~dg-~~l~v~~~~~~~i~v~d~~~~~~~~--~~~~~ 272 (343)
T 1ri6_A 197 ELNSSVDVWELKDPHGNIECVQTLDMMPEN-FSDTRWAADIHITPDG-RHLYACDRTASLITVFSVSEDGSVL--SKEGF 272 (343)
T ss_dssp TTTTEEEEEESSCTTSCCEEEEEEECSCTT-CCSCCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCCE--EEEEE
T ss_pred CCCCEEEEEEecCCCCcEEEEeeccccCcc-ccccCCccceEECCCC-CEEEEEecCCCEEEEEEEcCCCCce--EEeee
Confidence 799999999962 2221 2222111111 1123457789999999 6665 55579999999998 3221 11233
Q ss_pred ecccccccCCccceeeeecceeEEEEcCCCCEEEEee--CCeEEEEec
Q 014005 310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKVFRY 355 (432)
Q Consensus 310 ~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~--~~~i~iwd~ 355 (432)
+..+ ..+..++|+|+|++|++++ ++.+.+|++
T Consensus 273 ~~~~--------------~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 273 QPTE--------------TQPRGFNVDHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp EECS--------------SSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred ecCC--------------CccceEEECCCCCEEEEecCCCCeEEEEEE
Confidence 4332 3488999999999888764 499999976
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=5.4e-21 Score=184.24 Aligned_cols=253 Identities=13% Similarity=0.085 Sum_probs=178.5
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEe--cCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFET--VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
.+.+++|+|+|++|++++.|++|++||+ .+++ .+.++..+
T Consensus 180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~---------------------------~~~~i~~g----------- 221 (543)
T 1nir_A 180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT---------------------------KVAEIKIG----------- 221 (543)
T ss_dssp TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE---------------------------EEEEEECC-----------
T ss_pred ccceEEECCCCCEEEEECCCCeEEEEECcCCCCc---------------------------EEEEEecC-----------
Confidence 3889999999999999999999999999 5543 33455532
Q ss_pred hhcceeEEEEEEcC----CCCEEEEEe-CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 112 IEEKINRVRWCAAP----NGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 112 ~~~~v~~l~~~~s~----~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
..+..++| +| +|+++++++ .+++|.+||..+++........... +. ......+..+..+.+++++..++
T Consensus 222 --~~p~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~-~~-~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 222 --IEARSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT-VD-TQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp --SEEEEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC-SS-SCCEESCCCEEEEEECSSSSEEE
T ss_pred --CCcceEEe--CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc-cC-ccccccCCceEEEEECCCCCEEE
Confidence 56789999 89 999999987 4899999999887754433321100 00 00000123677888998766544
Q ss_pred c-ceeeccceEEEEeecccccceeeE--EeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCC
Q 014005 187 H-LEWTENMATKIANVGNSVHARCQK--VYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPS 261 (432)
Q Consensus 187 ~-~~~~~~~~v~i~d~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~ 261 (432)
. ... ++.|.+||.... +.+. .+ .+...+..++|+|++++++++ .+++|.+||.. +++....++..
T Consensus 296 vs~~~--~g~i~vvd~~~~---~~l~~~~i--~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~-tg~l~~~i~~g-- 365 (543)
T 1nir_A 296 VNVKE--TGKVLLVNYKDI---DNLTVTSI--GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK-DRRLSALVDVG-- 365 (543)
T ss_dssp EEETT--TTEEEEEECTTS---SSCEEEEE--ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT-TTEEEEEEECS--
T ss_pred EEECC--CCeEEEEEecCC---CcceeEEe--ccCcCccCceECCCCCEEEEEecCCCeEEEEECC-CCeEEEeeccC--
Confidence 3 333 789999999743 2222 33 356678899999999987755 68999999999 67777766321
Q ss_pred CcCCCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEcccccc---ccccceeecccccccCCccceeeeecceeEEEEcC
Q 014005 262 NMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSAL---CDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (432)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~---~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~ 337 (432)
...|.+....+ ++|++..+++++. .|++|.+||+.+... ..+.++.+..| ...+..++|+|
T Consensus 366 -~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~-------------g~~~~~v~~~p 430 (543)
T 1nir_A 366 -KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ-------------GGGSLFIKTHP 430 (543)
T ss_dssp -SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-------------CSCCCCEECCT
T ss_pred -CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC-------------CCCceEEEcCC
Confidence 12354433333 5787437777776 689999999987210 01226788776 56788899999
Q ss_pred CCCEEEEee--------CCeEEEEec
Q 014005 338 DGQHLLSRD--------YMNLKVFRY 355 (432)
Q Consensus 338 dg~~l~s~~--------~~~i~iwd~ 355 (432)
||++|+++. +++|.+||+
T Consensus 431 dg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 431 KSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp TCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred CCCcEEEecCCCCCcccCceEEEEEC
Confidence 999999975 479999999
No 130
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=9.2e-22 Score=174.88 Aligned_cols=235 Identities=11% Similarity=0.070 Sum_probs=170.5
Q ss_pred ccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecC-CcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
....|...|.+++|+|+|++|++++ ++.|++||+++ ++.. ....+|.
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~---------------------------~~~~~~~---- 83 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE---------------------------KVDTGFA---- 83 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE---------------------------ECCCTTC----
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce---------------------------Eeccccc----
Confidence 3456788999999999999999986 78999999988 6532 2233332
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEEe--CCCeEEEEEc--cCcceeeeeecCCCCccccccccccccccccccCCCC
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~--~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 181 (432)
...+.+++| +|+++++++++ .++...+|.+ .++....+.. . ..+..++|+|+
T Consensus 84 -------~~~~~~~~~--spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~------------~~~~~~~~spd 139 (297)
T 2ojh_A 84 -------TICNNDHGI--SPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTK---N------------LPSYWHGWSPD 139 (297)
T ss_dssp -------CCBCSCCEE--CTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCS---S------------SSEEEEEECTT
T ss_pred -------cccccceEE--CCCCCEEEEEEeCCCCcceEEEEECCCCceEEeec---C------------CCccceEECCC
Confidence 057889999 89999999998 3345555554 4444332211 1 34677899999
Q ss_pred Cccee-cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeec
Q 014005 182 FAHGY-HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDM 258 (432)
Q Consensus 182 ~~~~~-~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~ 258 (432)
+..++ .+.. ++.+++|+++.. .. ....+ ..+...+.+++|+|+++.++.+ .++.+++|+++..+.....+
T Consensus 140 g~~l~~~~~~--~~~~~l~~~~~~-~~-~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~-- 212 (297)
T 2ojh_A 140 GKSFTYCGIR--DQVFDIYSMDID-SG-VETRL-THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI-- 212 (297)
T ss_dssp SSEEEEEEEE--TTEEEEEEEETT-TC-CEEEC-CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC--
T ss_pred CCEEEEEECC--CCceEEEEEECC-CC-cceEc-ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE--
Confidence 99877 5555 788999997532 22 23344 5677889999999999988765 58999999987444444443
Q ss_pred CCCCcCCCCcceEEEEEcCCCCcEEEEEeCC-----------CeEEEEEccccccccccceeecccccccCCccceeeee
Q 014005 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (432)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 327 (432)
..+...+..++|+|++ ++|++++.+ +.|.+||+.+++.. .+..+.+| .
T Consensus 213 -----~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~~~~~-------------~ 271 (297)
T 2ojh_A 213 -----TDSAYGDWFPHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE--TLFDLFGG-------------Q 271 (297)
T ss_dssp -----CCCSEEEEEEEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE--EEEEEEES-------------T
T ss_pred -----ecCCcccCCeEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecCCCCce--eeeccCCC-------------C
Confidence 5667789999999999 888887765 56999999877641 02223343 5
Q ss_pred cceeEEEEcCCCCEEEEe
Q 014005 328 ASISDIKFANDGQHLLSR 345 (432)
Q Consensus 328 ~~v~~~~~s~dg~~l~s~ 345 (432)
..+..++|+|||++|+++
T Consensus 272 ~~~~~~~~spdg~~l~~~ 289 (297)
T 2ojh_A 272 GTMNSPNWSPDGDEFAYV 289 (297)
T ss_dssp TTSCSCCBCTTSSEEEEE
T ss_pred cccccceECCCCCEEEEE
Confidence 688999999999999875
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=9.7e-22 Score=197.97 Aligned_cols=249 Identities=9% Similarity=0.085 Sum_probs=173.1
Q ss_pred CCcEEEEEEcCCCCEEEEecc-cc-----eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCc---
Q 014005 32 VDIVSAIEFDKTGDYLAVGDR-GG-----RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP--- 102 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~--- 102 (432)
...|.+++|||||++|++++. |+ +|++||+.+++.. ..+..+..
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~---------------------------~~~~~~~~~~~ 88 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR---------------------------LLVDSKVVLPG 88 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE---------------------------EEECGGGTC--
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee---------------------------Eccchhhcccc
Confidence 457999999999999999988 88 8999999887532 11111110
Q ss_pred ---------cccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc---ceeeeeecCCCCccccccccccc
Q 014005 103 ---------EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAE 170 (432)
Q Consensus 103 ---------~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 170 (432)
.......+.....|.+++| +|||++|++++. +.|.+||+.++ ....+.. +.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~---~~----------- 151 (741)
T 2ecf_A 89 TETLSDEEKARRERQRIAAMTGIVDYQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTH---GE----------- 151 (741)
T ss_dssp ------------------CCEESCCCEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCC---SS-----------
T ss_pred cccccchhhhhhhhhhhccccCcceeEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEEccc---CC-----------
Confidence 0000000000024788999 999999999986 99999999987 5443322 22
Q ss_pred cccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCC----------------eeEEEeCCCCCEEE
Q 014005 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFN----------------INSISNNSDCETFV 234 (432)
Q Consensus 171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~----------------i~~~~~~~~~~~l~ 234 (432)
..+..++|+|++++++.+. ++.|.+||+. .++..+.. ..+... +.+++|+|||+.|+
T Consensus 152 ~~~~~~~~SPDG~~la~~~---~~~i~~~d~~---~g~~~~~~-~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~ 224 (741)
T 2ecf_A 152 GFATDAKLSPKGGFVSFIR---GRNLWVIDLA---SGRQMQLT-ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIA 224 (741)
T ss_dssp SCEEEEEECTTSSEEEEEE---TTEEEEEETT---TTEEEECC-CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEE
T ss_pred cccccccCCCCCCEEEEEe---CCcEEEEecC---CCCEEEec-cCCccceeccccceeeeeccccccceEECCCCCEEE
Confidence 5688899999999998876 5689999998 44554443 333222 47899999999999
Q ss_pred EE-cCC---------------------------------eEEEEeCCCC-CceeeEeecCCCCcCCCCcceEEEEEcCCC
Q 014005 235 SA-DDL---------------------------------RINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIY 279 (432)
Q Consensus 235 ~~-~d~---------------------------------~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 279 (432)
++ .|+ .|.+||++ + ++..... ....|...+..++| |||
T Consensus 225 ~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~-~~~~~~~~~-----~~~~~~~~~~~~~~-pDg 297 (741)
T 2ecf_A 225 YARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA-EQAQTQWID-----LGKEQDIYLARVNW-RDP 297 (741)
T ss_dssp EEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS-TTCCCEEEC-----CCSCSSEEEEEEEE-EET
T ss_pred EEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC-CCCceEEec-----CCCCcceEEEEEEe-CCC
Confidence 87 655 78889988 4 4433321 00257788999999 999
Q ss_pred CcEEEEEeC-----CCeEEEEEccccccccccceeecccccccCCccceeeeec---ceeEEEEcCCCCEEEEeeC-CeE
Q 014005 280 CNLLAYSSS-----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA---SISDIKFANDGQHLLSRDY-MNL 350 (432)
Q Consensus 280 ~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~---~v~~~~~s~dg~~l~s~~~-~~i 350 (432)
+.|++++. +..|++||+.+++. ...+..|. .. .+..++|+|||+++++++. +.+
T Consensus 298 -~~l~~~~~~~~~~~~~i~~~d~~~g~~----~~~~~~~~------------~~~~~~~~~~~~spdg~~~~~~~~~g~~ 360 (741)
T 2ecf_A 298 -QHLSFQRQSRDQKKLDLVEVTLASNQQ----RVLAHETS------------PTWVPLHNSLRFLDDGSILWSSERTGFQ 360 (741)
T ss_dssp -TEEEEEEEETTSSEEEEEEEETTTCCE----EEEEEEEC------------SSCCCCCSCCEECTTSCEEEEECTTSSC
T ss_pred -CEEEEEEecccCCeEEEEEEECCCCce----EEEEEcCC------------CCcCCcCCceEECCCCeEEEEecCCCcc
Confidence 87776653 56899999998875 34444420 11 4568999999998888754 767
Q ss_pred EEEec
Q 014005 351 KVFRY 355 (432)
Q Consensus 351 ~iwd~ 355 (432)
+||.+
T Consensus 361 ~l~~~ 365 (741)
T 2ecf_A 361 HLYRI 365 (741)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77766
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.89 E-value=3.1e-21 Score=180.30 Aligned_cols=222 Identities=12% Similarity=0.075 Sum_probs=169.6
Q ss_pred ccccCCCcEEEEEEcCCCCEEEEecccc---eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005 27 EELQDVDIVSAIEFDKTGDYLAVGDRGG---RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (432)
Q Consensus 27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~ 103 (432)
....|.+.|.+++|+|+|++|++++.++ .|++||+.+++. ..+..|.
T Consensus 173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~----------------------------~~l~~~~-- 222 (415)
T 2hqs_A 173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV----------------------------RQVASFP-- 222 (415)
T ss_dssp EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE----------------------------EEEECCS--
T ss_pred EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE----------------------------EEeecCC--
Confidence 3346788999999999999999999875 999999988652 2456677
Q ss_pred ccccchhhhhcceeEEEEEEcCCCCEEE-EEeCCC--eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC
Q 014005 104 FDYLKSLEIEEKINRVRWCAAPNGSMFI-LSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180 (432)
Q Consensus 104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 180 (432)
..+.+++| +|||++|+ +++.++ .|++||+.+++...+.. +. ..+..++|+|
T Consensus 223 ----------~~~~~~~~--spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~---~~-----------~~~~~~~~sp 276 (415)
T 2hqs_A 223 ----------RHNGAPAF--SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD---GR-----------SNNTEPTWFP 276 (415)
T ss_dssp ----------SCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC---CS-----------SCEEEEEECT
T ss_pred ----------CcccCEEE--cCCCCEEEEEEecCCCceEEEEECCCCCEEeCcC---CC-----------CcccceEECC
Confidence 78999999 99999888 555555 49999998877544322 22 5678899999
Q ss_pred CCcceecceeeccc--eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC---CeEEEEeCCCCCceee
Q 014005 181 SFAHGYHLEWTENM--ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---LRINLWNLEISDQCFN 254 (432)
Q Consensus 181 ~~~~~~~~~~~~~~--~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d---~~i~lwd~~~~~~~~~ 254 (432)
++.+++.++.. ++ .+.+||+. .++.. .+ ..+...+.+++|+|+|++|+++ .+ ..|++||++ +++..
T Consensus 277 dg~~l~~~s~~-~g~~~i~~~d~~---~~~~~-~l-~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~-~~~~~- 348 (415)
T 2hqs_A 277 DSQNLAFTSDQ-AGRPQVYKVNIN---GGAPQ-RI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA-TGGVQ- 348 (415)
T ss_dssp TSSEEEEEECT-TSSCEEEEEETT---SSCCE-EC-CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT-TCCEE-
T ss_pred CCCEEEEEECC-CCCcEEEEEECC---CCCEE-EE-ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECC-CCCEE-
Confidence 99988877641 33 67777876 33332 33 4566788999999999999977 43 589999999 45443
Q ss_pred EeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC---eEEEEEccccccccccceeecccccccCCccceeeeeccee
Q 014005 255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (432)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~ 331 (432)
.+ ..+. .+.+++|+|++ ++|++++.++ .|++||+..+. .+.+..| .+.|.
T Consensus 349 ~l-------~~~~-~~~~~~~spdg-~~l~~~s~~~~~~~l~~~d~~g~~-----~~~l~~~-------------~~~v~ 401 (415)
T 2hqs_A 349 VL-------SSTF-LDETPSLAPNG-TMVIYSSSQGMGSVLNLVSTDGRF-----KARLPAT-------------DGQVK 401 (415)
T ss_dssp EC-------CCSS-SCEEEEECTTS-SEEEEEEEETTEEEEEEEETTSCC-----EEECCCS-------------SSEEE
T ss_pred Ee-------cCCC-CcCCeEEcCCC-CEEEEEEcCCCccEEEEEECCCCc-----EEEeeCC-------------CCCCc
Confidence 22 3343 78999999999 8888888776 79999988544 4777776 68999
Q ss_pred EEEEcCCC
Q 014005 332 DIKFANDG 339 (432)
Q Consensus 332 ~~~~s~dg 339 (432)
+++|+|.-
T Consensus 402 ~~~~~~~~ 409 (415)
T 2hqs_A 402 FPAWSPYL 409 (415)
T ss_dssp EEEECCCC
T ss_pred CCcccccc
Confidence 99999964
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=2.6e-21 Score=194.26 Aligned_cols=245 Identities=11% Similarity=0.031 Sum_probs=171.0
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
.+.+++|+|+|+++++ +.||+|++||+.+++.. ..+.+|... .
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~---------------------------~~~~~~~~~---------~ 60 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST---------------------------VLIEGKKIE---------S 60 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE---------------------------EEECTTTTT---------T
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE---------------------------EEecccccc---------c
Confidence 4678999999997776 78999999999887632 344445400 0
Q ss_pred cceeEEEEEEcCCCCEEEEEeCC---------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005 114 EKINRVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
..|.+++| +|||++|++++.+ +.+.+||+.+++...+.....+. ..+..++|+|+++.
T Consensus 61 ~~v~~~~~--SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~-----------~~~~~~~~SPdG~~ 127 (723)
T 1xfd_A 61 LRAIRYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN-----------AKLQYAGWGPKGQQ 127 (723)
T ss_dssp TTCSEEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS-----------CCCSBCCBCSSTTC
T ss_pred cccceEEE--CCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccc-----------ccccccEECCCCCE
Confidence 14899999 9999999999764 78889999988764444333222 45788999999999
Q ss_pred eecceeeccceEEEEeecccccceeeEEeecCCCCC------------------eeEEEeCCCCCEEEEE-cCC------
Q 014005 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFN------------------INSISNNSDCETFVSA-DDL------ 239 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~------------------i~~~~~~~~~~~l~~~-~d~------ 239 (432)
++.+. ++.|.+||+. .++..+.. ..+... +.+++|+|||+.|+++ .|+
T Consensus 128 la~~~---~~~i~~~~~~---~g~~~~~~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~ 200 (723)
T 1xfd_A 128 LIFIF---ENNIYYCAHV---GKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIM 200 (723)
T ss_dssp EEEEE---TTEEEEESSS---SSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEE
T ss_pred EEEEE---CCeEEEEECC---CCceEEEe-cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceE
Confidence 98876 4789999998 44555544 333332 3789999999999987 442
Q ss_pred ----------------------------eEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeC---
Q 014005 240 ----------------------------RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--- 288 (432)
Q Consensus 240 ----------------------------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--- 288 (432)
.|++||+. ++.....+.. +.....+...+..++|+||| +++++...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~-~~~~~~~l~~-~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~ 277 (723)
T 1xfd_A 201 ELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN-GPTHDLEMMP-PDDPRMREYYITMVKWATST-KVAVTWLNRAQ 277 (723)
T ss_dssp EECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS-SSCCCEECCC-CCCGGGSSEEEEEEEESSSS-EEEEEEEETTS
T ss_pred EeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC-CCceeEEeeC-CccCCCccceeEEEEEeCCC-eEEEEEEcCCC
Confidence 78888887 4443333210 01112246779999999999 88877653
Q ss_pred -CCeEEEEEccccccccccceeecccccccCCccceeeeecce----eEEEEcCCCCEEEE--ee-CC------eEEEEe
Q 014005 289 -RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI----SDIKFANDGQHLLS--RD-YM------NLKVFR 354 (432)
Q Consensus 289 -dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v----~~~~~s~dg~~l~s--~~-~~------~i~iwd 354 (432)
+..|++||+.+++. ...+..+ +...+ ..++|+|||++|+. +. ++ .|++||
T Consensus 278 ~~~~i~~~d~~~g~~----~~~~~~~------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 278 NVSILTLCDATTGVC----TKKHEDE------------SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp CEEEEEEEETTTCCE----EEEEEEE------------CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred CeEEEEEEeCCCCcc----eEEEEec------------cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 35799999998774 3443331 02333 37899999997774 32 35 577787
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=2.1e-20 Score=166.07 Aligned_cols=223 Identities=10% Similarity=0.103 Sum_probs=162.9
Q ss_pred EecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCC
Q 014005 49 VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS 128 (432)
Q Consensus 49 t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~ 128 (432)
.++.|++|++||+.+++. ..+..|. ..|.+++| +|+++
T Consensus 17 ~~~~~~~i~~~d~~~~~~----------------------------~~~~~~~------------~~v~~~~~--spdg~ 54 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM----------------------------RVVWQTP------------ELFEAPNW--SPDGK 54 (297)
T ss_dssp -CCCCEEEEEEETTTTEE----------------------------EEEEEES------------SCCEEEEE--CTTSS
T ss_pred CCCcceeEEEEeCCCCce----------------------------eeeccCC------------cceEeeEE--CCCCC
Confidence 456789999999987653 2455576 88999999 99999
Q ss_pred EEEEEeCCCeEEEEEccC-cceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccc
Q 014005 129 MFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA 207 (432)
Q Consensus 129 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~ 207 (432)
+|++++ ++.|.+||+.+ ++...+.... . ...+.+++|+|++.+++.+....++...+|.++.. ..
T Consensus 55 ~l~~~~-~~~i~~~d~~~~~~~~~~~~~~-~-----------~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~-~~ 120 (297)
T 2ojh_A 55 YLLLNS-EGLLYRLSLAGDPSPEKVDTGF-A-----------TICNNDHGISPDGALYAISDKVEFGKSAIYLLPST-GG 120 (297)
T ss_dssp EEEEEE-TTEEEEEESSSCCSCEECCCTT-C-----------CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETT-CC
T ss_pred EEEEEc-CCeEEEEeCCCCCCceEecccc-c-----------cccccceEECCCCCEEEEEEeCCCCcceEEEEECC-CC
Confidence 999987 78999999998 7654432211 1 15678899999999999888533556667766432 22
Q ss_pred eeeEEeecCCCCCeeEEEeCCCCCEEE-EE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEE
Q 014005 208 RCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 285 (432)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 285 (432)
. ...+ .+...+..++|+|+++.++ ++ .++.+++|+++........+ ..+...+.+++|+|++ +.|++
T Consensus 121 ~-~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~s~dg-~~l~~ 189 (297)
T 2ojh_A 121 T-PRLM--TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL-------THGEGRNDGPDYSPDG-RWIYF 189 (297)
T ss_dssp C-CEEC--CSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC-------CCSSSCEEEEEECTTS-SEEEE
T ss_pred c-eEEe--ecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc-------ccCCCccccceECCCC-CEEEE
Confidence 2 2333 2333588999999999888 56 89999999976333333332 5667789999999999 77666
Q ss_pred Ee-CCCeEEEEEcc-ccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eC-----------CeEE
Q 014005 286 SS-SRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-----------MNLK 351 (432)
Q Consensus 286 ~~-~dg~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~-----------~~i~ 351 (432)
++ .++.+++|++. .+.. ...+..| ...+..++|+|+|++|+.+ .+ +.|+
T Consensus 190 ~~~~~~~~~i~~~~~~~~~----~~~~~~~-------------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~ 252 (297)
T 2ojh_A 190 NSSRTGQMQIWRVRVDGSS----VERITDS-------------AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQ 252 (297)
T ss_dssp EECTTSSCEEEEEETTSSC----EEECCCC-------------SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred EecCCCCccEEEECCCCCC----cEEEecC-------------CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEE
Confidence 55 58999999987 3332 4556554 5678899999999998875 32 5699
Q ss_pred EEec
Q 014005 352 VFRY 355 (432)
Q Consensus 352 iwd~ 355 (432)
+||+
T Consensus 253 ~~d~ 256 (297)
T 2ojh_A 253 LMDM 256 (297)
T ss_dssp EEET
T ss_pred EEec
Confidence 9999
No 135
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=2.4e-20 Score=170.27 Aligned_cols=267 Identities=9% Similarity=0.030 Sum_probs=170.5
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecc---cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
..+...+..++|+|+|+ |++++. ++.|.+|++++++. +.+..+..+.
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-------------------------~~~~~~~~~~---- 85 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-------------------------HKLNTVVAPG---- 85 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-------------------------EEEEEEEEES----
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-------------------------EEeeeeecCC----
Confidence 34556778899999999 555444 68999999977542 2233444455
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEEe-CCCeEEEEEcc-CcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 183 (432)
..+..++| +|+|++|++++ .++.|.+|++. .+....+........ ..........+..++|+|+++
T Consensus 86 --------~~p~~~a~--spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~spdg~ 153 (347)
T 3hfq_A 86 --------TPPAYVAV--DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGH--GPRPEQDGSHIHYTDLTPDNR 153 (347)
T ss_dssp --------CCCSEEEE--ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCC--CSSTTCSSCCEEEEEECTTSC
T ss_pred --------CCCEEEEE--CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCC--CCCccccCCCceEEEECCCCc
Confidence 67889999 89999888887 68999999995 344333332221110 000000112466789999999
Q ss_pred ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCCCC-Cce--eeEeec
Q 014005 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEIS-DQC--FNIVDM 258 (432)
Q Consensus 184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~-~d~~i~lwd~~~~-~~~--~~~~~~ 258 (432)
.++.... ++.+.+|++...........+.......+..++|+|+|+++++ + .++.+.+|+++.. +.. ...+..
T Consensus 154 l~v~~~~--~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 231 (347)
T 3hfq_A 154 LAVIDLG--SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT 231 (347)
T ss_dssp EEEEETT--TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred EEEEeCC--CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee
Confidence 4444333 7799999998322222222221233446888999999997665 4 7899999998831 222 112211
Q ss_pred CCCCcCCCCcceEEEEEcCCCCcEE-EEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC
Q 014005 259 KPSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (432)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~ 337 (432)
.+... .....+..++|+|+| ++| ++...++.|.+||+..... ...+..+..| ...+..++|+|
T Consensus 232 ~~~~~-~~~~~~~~i~~spdG-~~l~v~~~~~~~v~v~~~~~~g~-~~~~~~~~~~-------------~~~~~~~~~sp 295 (347)
T 3hfq_A 232 IPADY-TAHNGAAAIRLSHDG-HFLYVSNRGYNTLAVFAVTADGH-LTLIQQISTE-------------GDFPRDFDLDP 295 (347)
T ss_dssp SCTTC-CSCCEEEEEEECTTS-CEEEEEEETTTEEEEEEECGGGC-EEEEEEEECS-------------SSCCCEEEECT
T ss_pred cCCCC-CCCCcceeEEECCCC-CEEEEEeCCCCEEEEEEECCCCc-EEEeEEEecC-------------CCCcCeEEECC
Confidence 11111 112458899999999 766 5566789999999973221 0112333332 34678999999
Q ss_pred CCCEEEEe-eC-CeEEEEec
Q 014005 338 DGQHLLSR-DY-MNLKVFRY 355 (432)
Q Consensus 338 dg~~l~s~-~~-~~i~iwd~ 355 (432)
||++|+++ .+ +.|.+|++
T Consensus 296 dg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 296 TEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEEcCCCcEEEEEE
Confidence 99988876 34 89999966
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=2.1e-19 Score=162.76 Aligned_cols=237 Identities=8% Similarity=0.063 Sum_probs=161.3
Q ss_pred EEEcCCCCE-EEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcce
Q 014005 38 IEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (432)
Q Consensus 38 ~~fsp~g~~-l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v 116 (432)
..|.+++++ +++++.++.|++||.++++.. ..+..+. ..+
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~~------------~~~ 43 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL---------------------------NQITLGY------------DFV 43 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEE---------------------------EEEECCC------------CEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccccee---------------------------eeEEccC------------Ccc
Confidence 346666655 678888999999999887632 3444444 556
Q ss_pred eEEEEEEcCCCCEEEEEeC-CCeEEEEEccCcce-eeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc
Q 014005 117 NRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (432)
Q Consensus 117 ~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 194 (432)
.++| +|+++++++++. ++.|.+||+.+++. ....... . ....+++|+|++.+++.... .++
T Consensus 44 -~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~-----------~~~~~~~~s~dg~~l~~~~~-~~~ 106 (331)
T 3u4y_A 44 -DTAI--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG--Q-----------SSMADVDITPDDQFAVTVTG-LNH 106 (331)
T ss_dssp -EEEE--CSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC--S-----------SCCCCEEECTTSSEEEECCC-SSS
T ss_pred -eEEE--cCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC--C-----------CCccceEECCCCCEEEEecC-CCC
Confidence 8999 899997766655 89999999988875 3222221 1 23334899999999884443 123
Q ss_pred --eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCe-EEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 195 --ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 195 --~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
.+.+||+. ..+.+..+ . ......+++|+|+|++++++ .++. +.+|+++..+.....- .........
T Consensus 107 ~~~i~v~d~~---~~~~~~~~-~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~----~~~~~~~~~ 177 (331)
T 3u4y_A 107 PFNMQSYSFL---KNKFISTI-P-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG----QEFISGGTR 177 (331)
T ss_dssp SCEEEEEETT---TTEEEEEE-E-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE----EEEECSSSS
T ss_pred cccEEEEECC---CCCeEEEE-E-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC----CccccCCCC
Confidence 89999998 56666666 2 34467899999999866654 5677 9999998433322110 000123345
Q ss_pred eEEEEEcCCCCcE-EEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-e-
Q 014005 270 ITSAEFHPIYCNL-LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D- 346 (432)
Q Consensus 270 v~~~~~~p~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~- 346 (432)
+..++|+|++ +. ++++..++.|.+||+.+++.. +.+..+.. ...+..++|+|||++|+.+ .
T Consensus 178 ~~~~~~spdg-~~l~v~~~~~~~v~v~d~~~~~~~-~~~~~~~~--------------~~~~~~~~~spdg~~l~v~~~~ 241 (331)
T 3u4y_A 178 PFNITFTPDG-NFAFVANLIGNSIGILETQNPENI-TLLNAVGT--------------NNLPGTIVVSRDGSTVYVLTES 241 (331)
T ss_dssp EEEEEECTTS-SEEEEEETTTTEEEEEECSSTTSC-EEEEEEEC--------------SSCCCCEEECTTSSEEEEECSS
T ss_pred ccceEECCCC-CEEEEEeCCCCeEEEEECCCCccc-ceeeeccC--------------CCCCceEEECCCCCEEEEEEcC
Confidence 7999999999 64 455557899999999987641 01233433 3567889999999977664 3
Q ss_pred CCeEEEEec
Q 014005 347 YMNLKVFRY 355 (432)
Q Consensus 347 ~~~i~iwd~ 355 (432)
++.|.+||+
T Consensus 242 ~~~i~~~d~ 250 (331)
T 3u4y_A 242 TVDVFNFNQ 250 (331)
T ss_dssp EEEEEEEET
T ss_pred CCEEEEEEC
Confidence 388999999
No 137
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.87 E-value=3.4e-20 Score=178.65 Aligned_cols=235 Identities=8% Similarity=0.083 Sum_probs=169.5
Q ss_pred EEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeE
Q 014005 39 EFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR 118 (432)
Q Consensus 39 ~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 118 (432)
.|+|++.++++++.|++|.+||..+++. +.++..+. . +..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~---------------------------~~~i~~g~------------~-~~~ 183 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKI---------------------------VKVIDTGY------------A-VHI 183 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEECST------------T-EEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceE---------------------------EEEEecCc------------c-cce
Confidence 4889999999999999999999988763 35665443 3 788
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEc--cCcceeeeeecCCCCccccccccccccccccccCCC----CCcceecceeec
Q 014005 119 VRWCAAPNGSMFILSTNDKTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP----SFAHGYHLEWTE 192 (432)
Q Consensus 119 l~~~~s~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~ 192 (432)
++| +|+|+++++++.|+.|.+||+ .+++.... +... .....++|+| ++++++.+...
T Consensus 184 v~~--spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~--i~~g------------~~p~~va~sp~~~~dg~~l~v~~~~- 246 (543)
T 1nir_A 184 SRM--SASGRYLLVIGRDARIDMIDLWAKEPTKVAE--IKIG------------IEARSVESSKFKGYEDRYTIAGAYW- 246 (543)
T ss_dssp EEE--CTTSCEEEEEETTSEEEEEETTSSSCEEEEE--EECC------------SEEEEEEECCSTTCTTTEEEEEEEE-
T ss_pred EEE--CCCCCEEEEECCCCeEEEEECcCCCCcEEEE--EecC------------CCcceEEeCCCcCCCCCEEEEEEcc-
Confidence 999 999999999999999999999 66653322 2211 4568899999 99999887642
Q ss_pred cceEEEEeecccccceeeEEeecC---------C-CCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCCCCCceeeEeecCC
Q 014005 193 NMATKIANVGNSVHARCQKVYPHA---------H-DFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKP 260 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~---------~-~~~i~~~~~~~~~~~l~~-~-~d~~i~lwd~~~~~~~~~~~~~~~ 260 (432)
++.+.+||.. +.++++.+... | ...+.++.++|+++.+++ . .++.|.+||+. ....+....
T Consensus 247 ~~~v~v~D~~---t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~-~~~~l~~~~--- 319 (543)
T 1nir_A 247 PPQFAIMDGE---TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK-DIDNLTVTS--- 319 (543)
T ss_dssp SSEEEEEETT---TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT-TSSSCEEEE---
T ss_pred CCeEEEEecc---ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEec-CCCcceeEE---
Confidence 7899999988 66777766211 2 237889999998776654 4 89999999998 333333110
Q ss_pred CCcCCCCcceEEEEEcCCCCcEEEE-EeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC-
Q 014005 261 SNMDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND- 338 (432)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d- 338 (432)
..+...+..+.|+|++ ++|++ +..+++|.+||+.++++ +..+... ..| |.+....+ ++|+
T Consensus 320 ---i~~~~~~~~~~~spdg-~~l~va~~~~~~v~v~D~~tg~l----~~~i~~g-~~p--------h~g~g~~~-~~p~~ 381 (543)
T 1nir_A 320 ---IGAAPFLHDGGWDSSH-RYFMTAANNSNKVAVIDSKDRRL----SALVDVG-KTP--------HPGRGANF-VHPKY 381 (543)
T ss_dssp ---EECCSSCCCEEECTTS-CEEEEEEGGGTEEEEEETTTTEE----EEEEECS-SSB--------CCTTCEEE-EETTT
T ss_pred ---eccCcCccCceECCCC-CEEEEEecCCCeEEEEECCCCeE----EEeeccC-CCC--------CCCCCccc-CCCCC
Confidence 1234567889999999 76554 45689999999999876 4555430 000 02222222 4777
Q ss_pred CCEEEEe--eCCeEEEEec
Q 014005 339 GQHLLSR--DYMNLKVFRY 355 (432)
Q Consensus 339 g~~l~s~--~~~~i~iwd~ 355 (432)
|++++++ ++++|.+||+
T Consensus 382 g~~~~s~~~~d~~V~v~d~ 400 (543)
T 1nir_A 382 GPVWSTSHLGDGSISLIGT 400 (543)
T ss_dssp EEEEEEEBSSSSEEEEEEC
T ss_pred ccEEEeccCCCceEEEEEe
Confidence 7777776 3599999998
No 138
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=5.4e-21 Score=179.31 Aligned_cols=227 Identities=10% Similarity=-0.001 Sum_probs=152.6
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
...++.+++++++.++++++.++ +++|+................+.. ...... ..+.
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~---------- 92 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVD-----------KVQGLL-VPMK---------- 92 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEE-----------CCCCEE-ECCS----------
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccc-----------cCcccc-ccCC----------
Confidence 44689999999999999999887 999986542110000000000000 000000 1123
Q ss_pred hhcceeEEEEEEcCCCCEEE----EEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 112 IEEKINRVRWCAAPNGSMFI----LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~----s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
..|.+++| +|++++|+ +++.|+.|++||+.++..... . .
T Consensus 93 --~~v~~l~~--spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~---~--~---------------------------- 135 (434)
T 2oit_A 93 --FPIHHLAL--SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK---Q--Q---------------------------- 135 (434)
T ss_dssp --SCEEEEEE--CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC---S--S----------------------------
T ss_pred --CcccEEEE--cCCCCEEEEEEeccCCCceEEEEEccccccCCc---C--C----------------------------
Confidence 78999999 89999999 788899999999976420000 0 0
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
.. .....+.+ .+|...|.+++|+|+ +.+|+++ .||+|++||++ .+...... .+
T Consensus 136 -----~~-----------~~~~~~~~-~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~-~~~~~~~~-------~~ 190 (434)
T 2oit_A 136 -----KR-----------PFAYHKLL-KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT-ETVKVCAT-------LP 190 (434)
T ss_dssp -----CC-----------CSEEEECC-CSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEES-SSEEEEEE-------EC
T ss_pred -----cc-----------eeeeeecc-CCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcC-CCcceeec-------cC
Confidence 00 00112223 578899999999998 7889998 99999999999 44443322 56
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~ 345 (432)
|...|++++|+|++ ++|++|+.||.|++||++ ++. ...+..|.... .+|...|.+++|++++.++++.
T Consensus 191 ~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~----~~~~~~~~~~~------~~~~~~v~~v~w~~~~~~l~~~ 258 (434)
T 2oit_A 191 STVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQE----KKVIPCPPFYE------SDHPVRVLDVLWIGTYVFAIVY 258 (434)
T ss_dssp GGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCE----EEEECCCTTCC------TTSCEEEEEEEEEETTEEEEEE
T ss_pred CCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Ccc----cccccCCcccC------CCCceeEEEEEEecCceEEEEE
Confidence 88899999999999 999999999999999998 443 24444321000 0113489999999999888652
Q ss_pred --eCC------eEEEEec
Q 014005 346 --DYM------NLKVFRY 355 (432)
Q Consensus 346 --~~~------~i~iwd~ 355 (432)
.+| .+++|++
T Consensus 259 ~~~dg~~~~~~~v~i~~l 276 (434)
T 2oit_A 259 AAADGTLETSPDVVMALL 276 (434)
T ss_dssp EETTCCSSSCCEEEEEEC
T ss_pred ccCCCccCCCCceEEEEe
Confidence 222 4999999
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.86 E-value=1.4e-19 Score=163.87 Aligned_cols=248 Identities=10% Similarity=0.027 Sum_probs=166.7
Q ss_pred CCcEEEEEEcCCCCEEEEecc-cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
...+ +++|+|+|++|++++. ++.|.+||..+++.. ...+..+.
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~--------------------------~~~~~~~~--------- 83 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK--------------------------VVAIQEGQ--------- 83 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE--------------------------EEEEEECS---------
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee--------------------------EEecccCC---------
Confidence 4456 9999999997666555 889999999887530 23444454
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCC---eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
....+++| +|++++++++..++ .|.+||+.+++........ .....++|+|++++++.
T Consensus 84 ---~~~~~~~~--s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--------------~~~~~~~~spdg~~l~~ 144 (331)
T 3u4y_A 84 ---SSMADVDI--TPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP--------------YDAVGIAISPNGNGLIL 144 (331)
T ss_dssp ---SCCCCEEE--CTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC--------------TTEEEEEECTTSSCEEE
T ss_pred ---CCccceEE--CCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC--------------CCccceEECCCCCEEEE
Confidence 55555999 89999998655553 8999999988754433221 34578999999987776
Q ss_pred ceeeccce-EEEEeeccccccee--eEEeecCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCCCCCce---eeEeecC
Q 014005 188 LEWTENMA-TKIANVGNSVHARC--QKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQC---FNIVDMK 259 (432)
Q Consensus 188 ~~~~~~~~-v~i~d~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~-~-~d~~i~lwd~~~~~~~---~~~~~~~ 259 (432)
.... ++. +.+|++........ ...+ .....+..++|+|+|+++++ + .++.|.+||++ +++. +..+
T Consensus 145 ~~~~-~~~~i~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~-~~~~~~~~~~~--- 217 (331)
T 3u4y_A 145 IDRS-SANTVRRFKIDADGVLFDTGQEFI--SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ-NPENITLLNAV--- 217 (331)
T ss_dssp EEET-TTTEEEEEEECTTCCEEEEEEEEE--CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS-STTSCEEEEEE---
T ss_pred EecC-CCceEEEEEECCCCcEeecCCccc--cCCCCccceEECCCCCEEEEEeCCCCeEEEEECC-CCcccceeeec---
Confidence 6542 356 99999874211111 1222 34456899999999996654 4 78999999998 5555 4443
Q ss_pred CCCcCCCCcceEEEEEcCCCCcEEEEE-eCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005 260 PSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (432)
Q Consensus 260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d 338 (432)
. ....+..++|+|++ ++++++ ..++.|.+||+.+++... +..+..+ ..... ........++|+||
T Consensus 218 ----~-~~~~~~~~~~spdg-~~l~v~~~~~~~i~~~d~~~~~~~~--~~~~~~~-~~~~~-----~~~~~~~~~~~spd 283 (331)
T 3u4y_A 218 ----G-TNNLPGTIVVSRDG-STVYVLTESTVDVFNFNQLSGTLSF--VKSFGHG-LLIDP-----RPLFGANQMALNKT 283 (331)
T ss_dssp ----E-CSSCCCCEEECTTS-SEEEEECSSEEEEEEEETTTTEEEE--EEEEECC-CCCCC-----GGGTTCCCEEECTT
T ss_pred ----c-CCCCCceEEECCCC-CEEEEEEcCCCEEEEEECCCCceee--ecccccc-cccCC-----CCcccccceEECCC
Confidence 2 23557889999999 755554 467889999999876410 1122110 00000 00122356899999
Q ss_pred CCEEEE-eeC-CeEEEEec
Q 014005 339 GQHLLS-RDY-MNLKVFRY 355 (432)
Q Consensus 339 g~~l~s-~~~-~~i~iwd~ 355 (432)
|++|+. +.+ +.|.+||+
T Consensus 284 g~~l~v~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 284 ETKLFISANISRELKVFTI 302 (331)
T ss_dssp SSEEEEEETTTTEEEEEET
T ss_pred CCEEEEecCCCCcEEEEEe
Confidence 998865 444 89999999
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=4e-19 Score=162.29 Aligned_cols=252 Identities=9% Similarity=0.030 Sum_probs=179.6
Q ss_pred cCCCcEEEEEEcCCCCEEEEecc-------cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCc
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDR-------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP 102 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~ 102 (432)
.....+..++|+|+|++|++++. ++.|.+||..+++.. ..+...
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~-- 88 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT---------------------------QAIHND-- 88 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE---------------------------EEEEES--
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE---------------------------EEEecC--
Confidence 34567889999999998887763 568999999886532 333322
Q ss_pred cccccchhhhhcceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC
Q 014005 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (432)
Q Consensus 103 ~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 181 (432)
..+..++| ++++++++.+ ..++.|.+||+.+++............. .......+..++++|+
T Consensus 89 -----------~~~~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~d 151 (353)
T 3vgz_A 89 -----------LKPFGATI--NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRT----EEVRPLQPRELVADDA 151 (353)
T ss_dssp -----------SCCCSEEE--ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCC----SSCCCCEEEEEEEETT
T ss_pred -----------CCcceEEE--CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccc----cccCCCCCceEEECCC
Confidence 44678899 8899865554 5579999999998875443333211000 0000012567899999
Q ss_pred CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCC
Q 014005 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (432)
Q Consensus 182 ~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~ 260 (432)
+..++.+....++.+.+||.. +.+....+ ..+...+.+++|+|+++.++++ .++.+.+||.. +++....+...
T Consensus 152 g~~l~~~~~~~~~~i~~~d~~---~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~- 225 (353)
T 3vgz_A 152 TNTVYISGIGKESVIWVVDGG---NIKLKTAI-QNTGKMSTGLALDSEGKRLYTTNADGELITIDTA-DNKILSRKKLL- 225 (353)
T ss_dssp TTEEEEEEESSSCEEEEEETT---TTEEEEEE-CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT-TTEEEEEEECC-
T ss_pred CCEEEEEecCCCceEEEEcCC---CCceEEEe-cCCCCccceEEECCCCCEEEEEcCCCeEEEEECC-CCeEEEEEEcC-
Confidence 998887765447889999998 66777776 4455668899999999999998 89999999999 56666554221
Q ss_pred CCcCCCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC
Q 014005 261 SNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (432)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg 339 (432)
..++...+..++|+|++ +.+++++ .++.|.+||+.+++. ...+... ....++|+|+|
T Consensus 226 --~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~----~~~~~~~---------------~~~~~~~s~dg 283 (353)
T 3vgz_A 226 --DDGKEHFFINISLDTAR-QRAFITDSKAAEVLVVDTRNGNI----LAKVAAP---------------ESLAVLFNPAR 283 (353)
T ss_dssp --CSSSCCCEEEEEEETTT-TEEEEEESSSSEEEEEETTTCCE----EEEEECS---------------SCCCEEEETTT
T ss_pred --CCCCCcccceEEECCCC-CEEEEEeCCCCEEEEEECCCCcE----EEEEEcC---------------CCceEEECCCC
Confidence 12345568899999999 6555555 559999999998775 4555441 22569999999
Q ss_pred CEEEEe--eCCeEEEEec
Q 014005 340 QHLLSR--DYMNLKVFRY 355 (432)
Q Consensus 340 ~~l~s~--~~~~i~iwd~ 355 (432)
++++.+ .++.|.+||+
T Consensus 284 ~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 284 NEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp TEEEEEETTTTEEEEEET
T ss_pred CEEEEEECCCCeEEEEEC
Confidence 966554 3499999999
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=2e-18 Score=156.88 Aligned_cols=212 Identities=11% Similarity=0.104 Sum_probs=141.9
Q ss_pred cceeEEEEEEcCCCCEEEEEeCC-CeEEEEEcc--CcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 114 EKINRVRWCAAPNGSMFILSTND-KTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d-~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
..+.+++| +|+++++++++.+ +.|.+|++. ++....+..... ...+..++|+|++.+++.+..
T Consensus 38 ~~~~~~~~--spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~s~dg~~l~~~~~ 103 (343)
T 1ri6_A 38 GQVQPMVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL------------PGSLTHISTDHQGQFVFVGSY 103 (343)
T ss_dssp SCCCCEEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC------------SSCCSEEEECTTSSEEEEEET
T ss_pred CCCceEEE--CCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc------------CCCCcEEEEcCCCCEEEEEec
Confidence 67889999 8999999888876 999999997 555444333221 136778999999997766543
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEe--ecCCCCcCCC
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV--DMKPSNMDDL 266 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~--~~~~~~~~~~ 266 (432)
.++.+.+||+...........+ .....+.+++|+|+++.++++ .++.|.+||++..+...... .. . ...
T Consensus 104 -~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~-~~~ 176 (343)
T 1ri6_A 104 -NAGNVSVTRLEDGLPVGVVDVV--EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV---T-TVE 176 (343)
T ss_dssp -TTTEEEEEEEETTEEEEEEEEE--CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE---E-CST
T ss_pred -CCCeEEEEECCCCccccccccc--cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc---c-cCC
Confidence 2678999999522244455554 234468999999999977765 79999999998324332111 00 0 122
Q ss_pred CcceEEEEEcCCCCcEEE-EEeCCCeEEEEEccc--cccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005 267 TEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~-~~~~dg~i~iwd~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 343 (432)
...+..++|+|++ ++++ ++..++.|.+||+.. ++.. ....+...+.... ....+..++|+|+|++|+
T Consensus 177 ~~~~~~~~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~~~~~~~~~~-------~~~~~~~i~~s~dg~~l~ 246 (343)
T 1ri6_A 177 GAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIE--CVQTLDMMPENFS-------DTRWAADIHITPDGRHLY 246 (343)
T ss_dssp TCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCE--EEEEEECSCTTCC-------SCCCEEEEEECTTSSEEE
T ss_pred CCCcceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEE--EEeeccccCcccc-------ccCCccceEECCCCCEEE
Confidence 3468899999999 7555 445889999999953 3320 0111111000000 023567899999999887
Q ss_pred E-e-eCCeEEEEecC
Q 014005 344 S-R-DYMNLKVFRYE 356 (432)
Q Consensus 344 s-~-~~~~i~iwd~~ 356 (432)
. + .++.|++||+.
T Consensus 247 v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 247 ACDRTASLITVFSVS 261 (343)
T ss_dssp EEETTTTEEEEEEEC
T ss_pred EEecCCCEEEEEEEc
Confidence 5 4 34999999993
No 142
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=4.7e-19 Score=161.51 Aligned_cols=255 Identities=13% Similarity=0.099 Sum_probs=173.0
Q ss_pred EEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcce
Q 014005 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (432)
Q Consensus 37 ~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v 116 (432)
.++++++++++++++.+++|++||..+++.. ..+..+. ...+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~~-----------~~~~ 45 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVY---------------------------KSCVMPD-----------KFGP 45 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEE---------------------------EEEECSS-----------CCSS
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEE---------------------------EEEecCC-----------CCCC
Confidence 4568889999999999999999999886532 3333221 0257
Q ss_pred eEEEEEEcCCCCEEE-EEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee----
Q 014005 117 NRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT---- 191 (432)
Q Consensus 117 ~~l~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---- 191 (432)
..++| +|++++++ ++..++.|.+||+.+++..........+ ......+..++|+|++++++.+...
T Consensus 46 ~~~~~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~-------~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 116 (349)
T 1jmx_B 46 GTAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP-------GEVGRSMYSFAISPDGKEVYATVNPTQRL 116 (349)
T ss_dssp CEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST-------TEEEECSSCEEECTTSSEEEEEEEEEEEC
T ss_pred ceeEE--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc-------ccccccccceEECCCCCEEEEEccccccc
Confidence 78999 89998665 4457899999999988754333221100 0001347789999999999888751
Q ss_pred ------ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcC-
Q 014005 192 ------ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD- 264 (432)
Q Consensus 192 ------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~- 264 (432)
.++.+.+||+......+.+..+ .+...+.+++|+|+++ ++++ ++.|.+||.. +++....+........
T Consensus 117 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~-l~~~-~~~i~~~d~~-~~~~~~~~~~~~~~~~~ 191 (349)
T 1jmx_B 117 NDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADDGS-LYVA-GPDIYKMDVK-TGKYTVALPLRNWNRKG 191 (349)
T ss_dssp SSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEECTTSC-EEEE-SSSEEEECTT-TCCEEEEECSTTCCCTT
T ss_pred ccccccCCCeEEEEECCCccccceeeec--cCCCcccceeECCCCc-EEEc-cCcEEEEeCC-CCceeccccccccCCcc
Confidence 1379999999843334444444 2344688999999999 5555 2339999998 5555554422110000
Q ss_pred ------------------------------------------------------------CCCcceEEEEEcC-CCCcEE
Q 014005 265 ------------------------------------------------------------DLTEVITSAEFHP-IYCNLL 283 (432)
Q Consensus 265 ------------------------------------------------------------~~~~~v~~~~~~p-~~~~~l 283 (432)
.+...+..++|+| ++ +++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l 270 (349)
T 1jmx_B 192 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQI 270 (349)
T ss_dssp BCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEE
T ss_pred ccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEE
Confidence 0112456778889 98 888
Q ss_pred EEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec---Ccce
Q 014005 284 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY---EPVM 359 (432)
Q Consensus 284 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~---~~~~ 359 (432)
+++ ++.|.+||+.+++. +..+.. ...+.+++|+|||++|+++ .++.|++||+ +.+.
T Consensus 271 ~~~--~~~v~~~d~~~~~~----~~~~~~--------------~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 271 YGV--LNRLAKYDLKQRKL----IKAANL--------------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 330 (349)
T ss_dssp EEE--ESEEEEEETTTTEE----EEEEEC--------------SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred EEE--cCeEEEEECccCeE----EEEEcC--------------CCCccceEECCCCCEEEEecCCCeEEEEeccccceee
Confidence 877 88999999998775 355544 2457789999999888876 4499999999 4455
Q ss_pred eEeec
Q 014005 360 TLSFC 364 (432)
Q Consensus 360 ~~~~~ 364 (432)
.++.+
T Consensus 331 ~~~~~ 335 (349)
T 1jmx_B 331 NIKLP 335 (349)
T ss_dssp EEECS
T ss_pred eeecC
Confidence 55444
No 143
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=4.3e-20 Score=180.65 Aligned_cols=231 Identities=13% Similarity=0.054 Sum_probs=162.2
Q ss_pred CCcEEEEEEcCCCCEEEEecc-cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
..+|++++|+|||++||+++. ||+++||++++++. ..+..|.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~----------------------------~~lt~~~--------- 63 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET----------------------------VKLNREP--------- 63 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE----------------------------EECCSSC---------
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc----------------------------Eeeeccc---------
Confidence 347999999999999999887 99999999976542 2333333
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeC---CCeEEEEEccC---cceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD---QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~---d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
...+..++| +|| +.+++++. +....+|.+.. +....+.. . ......+|+|++..
T Consensus 64 --~~~~~~~~~--spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~---~------------~~~~~~~~s~dg~~ 123 (582)
T 3o4h_A 64 --INSVLDPHY--GVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA---V------------KPMRILSGVDTGEA 123 (582)
T ss_dssp --CSEECEECT--TCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTT---S------------CSBEEEEEEECSSC
T ss_pred --ccccccccC--CCC-eEEEEeccCCCCcceEEEEEeccCCCccccccC---C------------CCceeeeeCCCCCe
Confidence 047889999 888 77777765 45566766543 22121111 1 12334577777765
Q ss_pred eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC----CeEEEEeCCCCCceeeEeecC
Q 014005 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMK 259 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d----~~i~lwd~~~~~~~~~~~~~~ 259 (432)
++..+.. ++.+.+||+. ++++.+.. ..+ . .+++|+|||+.++++ .+ +.|++||++ +++.. .+
T Consensus 124 ~~~~s~~-~~~~~l~d~~---~g~~~~l~-~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~-~g~~~-~l--- 190 (582)
T 3o4h_A 124 VVFTGAT-EDRVALYALD---GGGLRELA-RLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLS-SGGLR-VF--- 190 (582)
T ss_dssp EEEEEEC-SSCEEEEEEE---TTEEEEEE-EES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETT-TCCCE-EE---
T ss_pred EEEEecC-CCCceEEEcc---CCcEEEee-cCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCC-CCCce-Ee---
Confidence 4333222 3445599997 55555544 222 2 789999999999976 55 789999998 44433 33
Q ss_pred CCCcCCCCcceEEEEEcCCCCcEEEEEeCCC--eEEEEEccccccccccceeecccccccCCccceeeeecceeEEE---
Q 014005 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK--- 334 (432)
Q Consensus 260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~--- 334 (432)
..|...+..++|+||| +.|+++..++ .|++||+.+++. ..+.+| ...+..++
T Consensus 191 ----~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~-----~~~~~~-------------~~~~~~~~~~~ 247 (582)
T 3o4h_A 191 ----DSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSV-----EDLELP-------------SKDFSSYRPTA 247 (582)
T ss_dssp ----CCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCE-----EECCCS-------------CSHHHHHCCSE
T ss_pred ----ecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcE-----EEccCC-------------CcChhhhhhcc
Confidence 6777889999999999 8999888888 899999998775 355554 34455555
Q ss_pred -----EcCCCCEEEEe-eCCeEEEEec
Q 014005 335 -----FANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 335 -----~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
|+|||++++++ .++++++|++
T Consensus 248 ~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 248 ITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 99999888876 4599999998
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.85 E-value=1.6e-19 Score=180.86 Aligned_cols=255 Identities=12% Similarity=0.130 Sum_probs=169.5
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecC-----CcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG-----GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~ 104 (432)
.+...+.+++|||+|++||++ .++.|++|++.+ ++.. .....+...+
T Consensus 118 ~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~---------------------------~~~~~~~~~~ 169 (706)
T 2z3z_A 118 DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAI---------------------------AVTIDGTETL 169 (706)
T ss_dssp CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCE---------------------------ESCSCCBTTE
T ss_pred CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcE---------------------------EeccCCCCCe
Confidence 455677888999999998885 678999999887 5422 0111111000
Q ss_pred -cccchh-hhhcceeEEEEEEcCCCCEEEEEe---------------------------------CCCeEEEEEccCcce
Q 014005 105 -DYLKSL-EIEEKINRVRWCAAPNGSMFILST---------------------------------NDKTIKLWKVRDQKV 149 (432)
Q Consensus 105 -~~~~~~-~~~~~v~~l~~~~s~~~~~l~s~~---------------------------------~d~~i~iwd~~~~~~ 149 (432)
..+... +....+.++.| +|||++|++++ .+..|.+||+.+++.
T Consensus 170 ~~g~~~~~ee~~~~~~~~~--SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~ 247 (706)
T 2z3z_A 170 VYGQAVHQREFGIEKGTFW--SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT 247 (706)
T ss_dssp EESSCCGGGCTTCCCSEEE--CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred EcccchhhhhcCCCceEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence 000000 00034688999 99999999987 446899999998875
Q ss_pred eeeeecCCCCccccccccccccccccccCCCCCcceecceeec---cceEEEEeecccccc-eeeEEeecCCCC---Cee
Q 014005 150 KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE---NMATKIANVGNSVHA-RCQKVYPHAHDF---NIN 222 (432)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~v~i~d~~~~~~~-~~~~~~~~~~~~---~i~ 222 (432)
..+.....+. ..+..++|+|+++.++.+.... ...+.+||+. ++ .........+.. .+.
T Consensus 248 ~~~~~~~~~~-----------~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~---~g~~~~~~~~~~~~~~~~~~~ 313 (706)
T 2z3z_A 248 VYLQTGEPKE-----------KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAE---TGRFVRTLFVETDKHYVEPLH 313 (706)
T ss_dssp EECCCCSCTT-----------CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETT---TCCEEEEEEEEECSSCCCCCS
T ss_pred EeeccCCCCc-----------eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECC---CCceeeEEEEccCCCeECccC
Confidence 4443222222 5678999999999888876521 2389999987 44 222222112222 246
Q ss_pred EEEeCC--CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE-EEEcCCCCcEEEE-EeCCC----eEE
Q 014005 223 SISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS-AEFHPIYCNLLAY-SSSRG----FVR 293 (432)
Q Consensus 223 ~~~~~~--~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~~-~~~dg----~i~ 293 (432)
+++|+| +|++++++ .|+.+++|+++..+.....+ ..+...+.. ++|+|++ +.|+. ++.++ .|.
T Consensus 314 ~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l-------~~~~~~v~~~~~~spdg-~~l~~~~~~~~~~~~~l~ 385 (706)
T 2z3z_A 314 PLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV-------TKGEWEVTNFAGFDPKG-TRLYFESTEASPLERHFY 385 (706)
T ss_dssp CCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC-------CCSSSCEEEEEEECTTS-SEEEEEESSSCTTCBEEE
T ss_pred CceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec-------CCCCeEEEeeeEEcCCC-CEEEEEecCCCCceEEEE
Confidence 789999 99999888 89999999887445555544 556666776 7999999 65554 44544 677
Q ss_pred EEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eC----CeEEEEec
Q 014005 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY----MNLKVFRY 355 (432)
Q Consensus 294 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~----~~i~iwd~ 355 (432)
.||+.+++. ..+.. ...+..++|||||++|+.. ++ +.+++||+
T Consensus 386 ~~d~~~~~~-----~~l~~--------------~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 386 CIDIKGGKT-----KDLTP--------------ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp EEETTCCCC-----EESCC--------------SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred EEEcCCCCc-----eeccC--------------CCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 777776552 44432 4578899999999988763 32 57999999
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=1.3e-18 Score=157.70 Aligned_cols=243 Identities=9% Similarity=0.062 Sum_probs=170.4
Q ss_pred CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeec-CCccccccchhhhhc-ceeEEEEE
Q 014005 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEIEE-KINRVRWC 122 (432)
Q Consensus 45 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-h~~~~~~~~~~~~~~-~v~~l~~~ 122 (432)
++|++++.++.|++||..+++.. ..+.. +. . .+..++|
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~~~------------~~~~~~~~~- 41 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVD---------------------------KVITIADA------------GPTPMVPMV- 41 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEE---------------------------EEEECTTC------------TTCCCCEEE-
T ss_pred cEEEEcCCCCeEEEEECCCCcEE---------------------------EEEEcCCC------------CCCccceEE-
Confidence 57899999999999999876532 33332 21 1 4788999
Q ss_pred EcCCCCEEE-EEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee----------
Q 014005 123 AAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT---------- 191 (432)
Q Consensus 123 ~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------- 191 (432)
+|++++++ ++..++.|.+||+.+++........... .....+..++|+|++.+++.+...
T Consensus 42 -s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 42 -APGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp -CTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT--------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred -cCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc--------cccccccceEECCCCCEEEEEecccccccccccc
Confidence 89997665 4566789999999888754433221100 001257789999999888877521
Q ss_pred ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCC--CC-------
Q 014005 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKP--SN------- 262 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~--~~------- 262 (432)
.++.+.+||+. ..+....+ . ....+.+++|+|++++++++ ++.|.+||++ +++....+.... ..
T Consensus 113 ~~~~i~v~d~~---~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~s~dg 185 (337)
T 1pby_B 113 QPTRVALYDAE---TLSRRKAF-E-APRQITMLAWARDGSKLYGL-GRDLHVMDPE-AGTLVEDKPIQSWEAETYAQPDV 185 (337)
T ss_dssp CCCEEEEEETT---TTEEEEEE-E-CCSSCCCEEECTTSSCEEEE-SSSEEEEETT-TTEEEEEECSTTTTTTTBCCCBC
T ss_pred cCceEEEEECC---CCcEEEEE-e-CCCCcceeEECCCCCEEEEe-CCeEEEEECC-CCcEeeeeeccccCCCceeCCCc
Confidence 26899999997 55666665 2 24568889999999988887 7889999998 555544432211 00
Q ss_pred --------------------------------------------------cCCCCcceEEEEEcCCCCcEEEEEeCCCeE
Q 014005 263 --------------------------------------------------MDDLTEVITSAEFHPIYCNLLAYSSSRGFV 292 (432)
Q Consensus 263 --------------------------------------------------~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 292 (432)
...+...+.+++|+|++ ++++++ ++.|
T Consensus 186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v 262 (337)
T 1pby_B 186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVL 262 (337)
T ss_dssp CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEE
T ss_pred cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCC-CEEEEe--CCeE
Confidence 00112345679999999 888877 7899
Q ss_pred EEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec---CcceeEeec
Q 014005 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY---EPVMTLSFC 364 (432)
Q Consensus 293 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~---~~~~~~~~~ 364 (432)
.+||+.+++. ...+.. ...+.+++|+|||++|+++ .++.|++||+ +.+..+..+
T Consensus 263 ~~~d~~~~~~----~~~~~~--------------~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 263 ESFDLEKNAS----IKRVPL--------------PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEEETTTTEE----EEEEEC--------------SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred EEEECCCCcC----cceecC--------------CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 9999998765 455544 2467899999999988886 4499999999 455555554
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.83 E-value=8.3e-19 Score=175.62 Aligned_cols=253 Identities=10% Similarity=0.070 Sum_probs=169.4
Q ss_pred CcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 112 (432)
..|.+++|||+ +.++.+ .++.|++||+.+++. ..+..+.
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~----------------------------~~l~~~~----------- 120 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV----------------------------TYLFDTN----------- 120 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE----------------------------EEEECCT-----------
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce----------------------------EEccCCc-----------
Confidence 56999999999 555554 458999999987642 2344455
Q ss_pred hcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccC-----cceeeeeecCCCCcccccc-ccccccccccccCCCCCccee
Q 014005 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-----QKVKKIKEMDHFPFVSSEN-TLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~ 186 (432)
..+.+++| +|||++|+++ .++.|.+||+.+ ++...+............. .......+..+.|+|++++++
T Consensus 121 -~~~~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la 196 (706)
T 2z3z_A 121 -EETASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLA 196 (706)
T ss_dssp -TCCTTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEE
T ss_pred -ccccCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEE
Confidence 67888999 9999999985 689999999988 7644332211110000000 000012257899999999998
Q ss_pred cceee-------------------------------ccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEE
Q 014005 187 HLEWT-------------------------------ENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFV 234 (432)
Q Consensus 187 ~~~~~-------------------------------~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~ 234 (432)
.+... .+..+.+||+. .++...... ..+...+.+++|+|+|+.++
T Consensus 197 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 273 (706)
T 2z3z_A 197 FYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA---TGKTVYLQTGEPKEKFLTNLSWSPDENILY 273 (706)
T ss_dssp EEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT---TTEEEECCCCSCTTCEEEEEEECTTSSEEE
T ss_pred EEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC---CCceEeeccCCCCceeEeeEEEECCCCEEE
Confidence 87631 24689999997 444443331 24667799999999999998
Q ss_pred EE-cCC-----eEEEEeCCCCC-ceeeEeecCCCCcCCCCcceEEEEEcC--CCCcEEEEEeCCCeEEEEEcc-cccccc
Q 014005 235 SA-DDL-----RINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLAYSSSRGFVRLVDMR-QSALCD 304 (432)
Q Consensus 235 ~~-~d~-----~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~i~iwd~~-~~~~~~ 304 (432)
++ .++ .|++||++ ++ ........ ........+..++|+| ++ +++++++.||.++||++. +++.
T Consensus 274 ~~~~~~~~~~~~v~~~d~~-~g~~~~~~~~~---~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~~-- 346 (706)
T 2z3z_A 274 VAEVNRAQNECKVNAYDAE-TGRFVRTLFVE---TDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGRL-- 346 (706)
T ss_dssp EEEECTTSCEEEEEEEETT-TCCEEEEEEEE---ECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSCE--
T ss_pred EEEeCCCCCeeEEEEEECC-CCceeeEEEEc---cCCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCCE--
Confidence 87 554 89999998 45 33222200 0011112346789999 99 899999999999999886 4443
Q ss_pred ccceeecccccccCCccceeeeecceeE-EEEcCCCCEEEE-eeC-C----eEEEEec
Q 014005 305 HSARILRDAAESHGSKSFFTEIIASISD-IKFANDGQHLLS-RDY-M----NLKVFRY 355 (432)
Q Consensus 305 ~~~~~~~~h~~~~~~~~~~~~~~~~v~~-~~~s~dg~~l~s-~~~-~----~i~iwd~ 355 (432)
...+..| ...+.. ++|+|||+.|+. +.+ + .|+.||+
T Consensus 347 --~~~l~~~-------------~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 389 (706)
T 2z3z_A 347 --IRQVTKG-------------EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI 389 (706)
T ss_dssp --EEECCCS-------------SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred --EEecCCC-------------CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence 4556554 455766 799999998865 433 4 5666666
No 147
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.83 E-value=4.6e-19 Score=178.44 Aligned_cols=247 Identities=11% Similarity=0.079 Sum_probs=171.9
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCC---cCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGG---KNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
.|.+++|||||++|++++. +.|++||+.++ +. ..+..|.
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~----------------------------~~l~~~~--------- 151 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV----------------------------RQLTHGE--------- 151 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC----------------------------CBCCCSS---------
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE----------------------------EEcccCC---------
Confidence 4789999999999999886 89999999886 32 2455666
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccc---cccccccccccccCCCCCcceec
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE---NTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
..+..++| +|||++|++++ ++.|.+||+.+++...+............ ........+..++|+|++++++.
T Consensus 152 ---~~~~~~~~--SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~ 225 (741)
T 2ecf_A 152 ---GFATDAKL--SPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAY 225 (741)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEE
T ss_pred ---cccccccC--CCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEE
Confidence 78999999 99999999987 46899999998775543322111000000 00000112578999999999988
Q ss_pred ceeec-------------------------------cceEEEEeeccccc-ceeeEEeec-CCCCCeeEEEeCCCCCEEE
Q 014005 188 LEWTE-------------------------------NMATKIANVGNSVH-ARCQKVYPH-AHDFNINSISNNSDCETFV 234 (432)
Q Consensus 188 ~~~~~-------------------------------~~~v~i~d~~~~~~-~~~~~~~~~-~~~~~i~~~~~~~~~~~l~ 234 (432)
+.... ...+.+||+. . ++....... .|...+..++| |||+.|+
T Consensus 226 ~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~ 301 (741)
T 2ecf_A 226 ARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA---EQAQTQWIDLGKEQDIYLARVNW-RDPQHLS 301 (741)
T ss_dssp EEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS---TTCCCEEECCCSCSSEEEEEEEE-EETTEEE
T ss_pred EEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC---CCCceEEecCCCCcceEEEEEEe-CCCCEEE
Confidence 76521 0167788887 3 444333211 47778999999 9999999
Q ss_pred EE-c-----CCeEEEEeCCCCCceeeEeecCCCCcCCCCc----ceEEEEEcCCCCcEEEEEeCCCeEEEEEccc-cccc
Q 014005 235 SA-D-----DLRINLWNLEISDQCFNIVDMKPSNMDDLTE----VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALC 303 (432)
Q Consensus 235 ~~-~-----d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~ 303 (432)
++ . +..|++||++ +++...++ ..+.. .+..++|+|+| +++++++.||.++||.+.. ++
T Consensus 302 ~~~~~~~~~~~~i~~~d~~-~g~~~~~~-------~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~~~-- 370 (741)
T 2ecf_A 302 FQRQSRDQKKLDLVEVTLA-SNQQRVLA-------HETSPTWVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDSKGK-- 370 (741)
T ss_dssp EEEEETTSSEEEEEEEETT-TCCEEEEE-------EEECSSCCCCCSCCEECTTS-CEEEEECTTSSCEEEEECSSSC--
T ss_pred EEEecccCCeEEEEEEECC-CCceEEEE-------EcCCCCcCCcCCceEECCCC-eEEEEecCCCccEEEEEcCCCC--
Confidence 65 3 5679999998 56555544 22221 34678999999 7999999999888887652 22
Q ss_pred cccceeecccccccCCccceeeeecceeEE-EEcCCCCEEEE-eeC-C--eEEEEec
Q 014005 304 DHSARILRDAAESHGSKSFFTEIIASISDI-KFANDGQHLLS-RDY-M--NLKVFRY 355 (432)
Q Consensus 304 ~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~-~~s~dg~~l~s-~~~-~--~i~iwd~ 355 (432)
...+..| ...+..+ .|+|||+.|+. +++ + .++||++
T Consensus 371 ---~~~l~~~-------------~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 371 ---AAALTHG-------------NWSVDELLAVDEKAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp ---EEESCCS-------------SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred ---eeeeeec-------------ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence 2455554 4567777 59999998765 443 4 8999998
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.82 E-value=7.4e-19 Score=183.19 Aligned_cols=245 Identities=12% Similarity=0.075 Sum_probs=179.7
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
+.+...+.+++|+|+|++|+++ .++.|.+|+++..+.. .+.... .........|.
T Consensus 241 l~~~~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~--------~l~~~~---------~~~~~~~~~~~------- 295 (1045)
T 1k32_A 241 HTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE--------KIEIGD---------LESPEDRIISI------- 295 (1045)
T ss_dssp CCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE--------ECCCCC---------CCBCCSEEEEC-------
T ss_pred ecCCCCcceeeEcCCCCEEEEE-eCCEEEEecCCceEee--------eeccCc---------ccccccccccc-------
Confidence 3333456778999999999887 5889999998433210 000000 00000111233
Q ss_pred hhhhhcceeEEEEEEc-CCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccc-ccccccCCCCCccee
Q 014005 109 SLEIEEKINRVRWCAA-PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK-NFMNEHNPPSFAHGY 186 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~ 186 (432)
..+.+++| + |||+++++++ ++.|.+|++.++....+ ..+. . .+..++|+ ++..++
T Consensus 296 -----~~v~~~~~--S~pdG~~la~~~-~~~i~~~~~~~~~~~~~---~~~~-----------~~~~~~~~~s-dg~~l~ 352 (1045)
T 1k32_A 296 -----PSKFAEDF--SPLDGDLIAFVS-RGQAFIQDVSGTYVLKV---PEPL-----------RIRYVRRGGD-TKVAFI 352 (1045)
T ss_dssp -----GGGGEEEE--EECGGGCEEEEE-TTEEEEECTTSSBEEEC---SCCS-----------CEEEEEECSS-SEEEEE
T ss_pred -----cccceeee--cCCCCCEEEEEE-cCEEEEEcCCCCceEEc---cCCC-----------cceEEeeeEc-CCCeEE
Confidence 57899999 8 9999999888 78999999987764432 2222 3 67889999 998888
Q ss_pred cceeeccceEE-EEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005 187 HLEWTENMATK-IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (432)
Q Consensus 187 ~~~~~~~~~v~-i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 264 (432)
.++. ++.+. +|++. .... ..+ .+|...+..++|+|+|+.++++ .++.|++||++ +++..... .
T Consensus 353 ~~s~--~~~l~~~~d~~---~~~~-~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~-tg~~~~~~-------~ 417 (1045)
T 1k32_A 353 HGTR--EGDFLGIYDYR---TGKA-EKF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE-TGKPTVIE-------R 417 (1045)
T ss_dssp EEET--TEEEEEEEETT---TCCE-EEC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEEE-------E
T ss_pred EEEC--CCceEEEEECC---CCCc-eEe-cCCccceeeeEECCCCCEEEEECCCCeEEEEECC-CCceEEec-------c
Confidence 7776 66777 88876 3333 334 3677889999999999999998 89999999998 56655544 5
Q ss_pred CCCcceEEEEEcCCCCcEEEEEeCCC----------eEEEEEccccccccccceeecccccccCCccceeeeecceeEEE
Q 014005 265 DLTEVITSAEFHPIYCNLLAYSSSRG----------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 334 (432)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~~~~~dg----------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~ 334 (432)
+|...+.+++|+||| ++|++++.++ .|++||+.+++. ..+..| ...+..++
T Consensus 418 ~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~-----~~l~~~-------------~~~~~~~~ 478 (1045)
T 1k32_A 418 SREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-----FAATTE-------------NSHDYAPA 478 (1045)
T ss_dssp CSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-----EECSCS-------------SSBEEEEE
T ss_pred CCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCcE-----EEeeCC-------------CcccCCce
Confidence 788889999999999 8888877654 899999998763 556664 56778899
Q ss_pred EcCCCCEEEEeeC-CeEEEEec
Q 014005 335 FANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 335 ~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
|+|||++|+.+++ +...+|+.
T Consensus 479 ~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 479 FDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp ECTTSCEEEEEESCCCCCEECS
T ss_pred EcCCCCEEEEEecccCCcCcch
Confidence 9999999998755 77788876
No 149
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.82 E-value=7.5e-18 Score=153.84 Aligned_cols=235 Identities=9% Similarity=0.013 Sum_probs=166.4
Q ss_pred CCcEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 32 VDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
...+..++|+|+|+++ +++..++.|.+||..+++.. ..+..+... . ...
T Consensus 88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~~~~-~--~~~ 137 (353)
T 3vgz_A 88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK---------------------------GRLVLDDRK-R--TEE 137 (353)
T ss_dssp SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE---------------------------EEEESCCCC-C--CSS
T ss_pred CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE---------------------------EEEecCCCc-c--ccc
Confidence 4457789999999955 45566799999999887632 333332200 0 000
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEe--CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 111 EIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
.....+.++.| +|+++++++++ .++.|.+||+.+++....... .. ..+..++++|++..++.+
T Consensus 138 ~~~~~~~~~~~--s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~-----------~~~~~~~~s~dg~~l~~~ 202 (353)
T 3vgz_A 138 VRPLQPRELVA--DDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN--TG-----------KMSTGLALDSEGKRLYTT 202 (353)
T ss_dssp CCCCEEEEEEE--ETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC--CC-----------TTCCCCEEETTTTEEEEE
T ss_pred cCCCCCceEEE--CCCCCEEEEEecCCCceEEEEcCCCCceEEEecC--CC-----------CccceEEECCCCCEEEEE
Confidence 00013678999 89999887775 478999999998875443321 11 346788999999998888
Q ss_pred eeeccceEEEEeecccccceeeEEeec---CCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPH---AHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNM 263 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~ 263 (432)
.. ++.+.+||.. +.+....+.. ++...+..++|+|+++.++++ .++.|.+||.+ +++....+..
T Consensus 203 ~~--~~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~~~----- 271 (353)
T 3vgz_A 203 NA--DGELITIDTA---DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR-NGNILAKVAA----- 271 (353)
T ss_dssp CT--TSEEEEEETT---TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT-TCCEEEEEEC-----
T ss_pred cC--CCeEEEEECC---CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEEEEEc-----
Confidence 77 8899999998 5566655522 345578889999999987766 56999999998 5666665521
Q ss_pred CCCCcceEEEEEcCCCCcEE-EEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005 264 DDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (432)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 342 (432)
.. ...++|+|++ +.+ ++...++.|.+||+.+++. +..+.. ...+..++|+|||++|
T Consensus 272 --~~--~~~~~~s~dg-~~l~v~~~~~~~v~~~d~~~~~~----~~~~~~--------------~~~~~~~~~s~dg~~l 328 (353)
T 3vgz_A 272 --PE--SLAVLFNPAR-NEAYVTHRQAGKVSVIDAKSYKV----VKTFDT--------------PTHPNSLALSADGKTL 328 (353)
T ss_dssp --SS--CCCEEEETTT-TEEEEEETTTTEEEEEETTTTEE----EEEEEC--------------CSEEEEEEECTTSCEE
T ss_pred --CC--CceEEECCCC-CEEEEEECCCCeEEEEECCCCeE----EEEEec--------------CCCCCeEEEcCCCCEE
Confidence 11 2468999999 644 4455799999999998876 455555 3567899999999977
Q ss_pred EEe
Q 014005 343 LSR 345 (432)
Q Consensus 343 ~s~ 345 (432)
+.+
T Consensus 329 ~v~ 331 (353)
T 3vgz_A 329 YVS 331 (353)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=2.9e-18 Score=160.74 Aligned_cols=178 Identities=11% Similarity=0.138 Sum_probs=128.5
Q ss_pred ccCCCcEEEEEEcCCCCEEE----EecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLA----VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~----t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~ 104 (432)
+.+...|++++|+|+|++|| +|+.|++|+|||+.+...... ... ........+.+|.
T Consensus 89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~---------~~~-------~~~~~~~~~~~h~--- 149 (434)
T 2oit_A 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK---------QQK-------RPFAYHKLLKDAG--- 149 (434)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC---------SSC-------CCSEEEECCCSGG---
T ss_pred ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCc---------CCc-------ceeeeeeccCCCC---
Confidence 45667899999999999999 899999999999876410000 000 0011234567788
Q ss_pred cccchhhhhcceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005 105 DYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (432)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 183 (432)
..|.+++| +|+ +.+|++++.||+|++||++++...
T Consensus 150 ---------~~V~~v~~--~p~~~~~las~s~Dg~v~iwD~~~~~~~--------------------------------- 185 (434)
T 2oit_A 150 ---------GMVIDMKW--NPTVPSMVAVCLADGSIAVLQVTETVKV--------------------------------- 185 (434)
T ss_dssp ---------GSEEEEEE--CSSCTTEEEEEETTSCEEEEEESSSEEE---------------------------------
T ss_pred ---------CceEEEEE--CCCCCCEEEEEECCCeEEEEEcCCCcce---------------------------------
Confidence 99999999 787 789999999999999999866311
Q ss_pred ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC
Q 014005 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (432)
Q Consensus 184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~ 262 (432)
... .+|...|.+++|+|+|++|++| .||+|++||.+ +.....+......
T Consensus 186 ---------------------------~~~-~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~--~~~~~~~~~~~~~ 235 (434)
T 2oit_A 186 ---------------------------CAT-LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT--LQEKKVIPCPPFY 235 (434)
T ss_dssp ---------------------------EEE-ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT--CCEEEEECCCTTC
T ss_pred ---------------------------eec-cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC--CcccccccCCccc
Confidence 011 3577789999999999999999 99999999998 3334433211111
Q ss_pred cCCCCcceEEEEEcCCCCcEEEE-EeCCC------eEEEEEcccc
Q 014005 263 MDDLTEVITSAEFHPIYCNLLAY-SSSRG------FVRLVDMRQS 300 (432)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~~l~~-~~~dg------~i~iwd~~~~ 300 (432)
...|...|.+++|++++ .++++ +..|| .+++|++++.
T Consensus 236 ~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 236 ESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccC
Confidence 12345589999999987 66654 34443 3899999865
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=2.7e-19 Score=179.47 Aligned_cols=241 Identities=8% Similarity=0.051 Sum_probs=162.7
Q ss_pred EEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcce
Q 014005 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (432)
Q Consensus 37 ~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v 116 (432)
.++|+|+|++++++ .|++|++||+.+++.. ..+.+|... ...+
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~---------------------------~~~~~~~~~---------~~~~ 62 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY---------------------------TILSNRTMK---------SVNA 62 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE---------------------------EEECHHHHH---------TTTC
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE---------------------------EEEcccccc---------ccce
Confidence 68999999766655 5899999999887632 233333200 0138
Q ss_pred eEEEEEEcCCCCEEEEEeC---------CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 117 NRVRWCAAPNGSMFILSTN---------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 117 ~~l~~~~s~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
.+++| +|||++|++++. ++.|++||+.+++......+. ..+..++|+|+++.++.
T Consensus 63 ~~~~~--SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~--------------~~~~~~~~SPDG~~la~ 126 (719)
T 1z68_A 63 SNYGL--SPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP--------------RPIQYLCWSPVGSKLAY 126 (719)
T ss_dssp SEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC--------------SSBCCEEECSSTTCEEE
T ss_pred eeEEE--CCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC--------------cccccceECCCCCEEEE
Confidence 89999 999999999876 789999999988751101111 45788999999999988
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCCCe-----------------eEEEeCCCCCEEEEE-cCC----------
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNI-----------------NSISNNSDCETFVSA-DDL---------- 239 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i-----------------~~~~~~~~~~~l~~~-~d~---------- 239 (432)
+. ++.|++|++. .+.+.+....++...+ .+++|+|||+.|+++ .|.
T Consensus 127 ~~---~~~i~~~~~~---~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~ 200 (719)
T 1z68_A 127 VY---QNNIYLKQRP---GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSY 200 (719)
T ss_dssp EE---TTEEEEESST---TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEE
T ss_pred EE---CCeEEEEeCC---CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeec
Confidence 74 7899999997 3444333212322222 589999999999987 442
Q ss_pred ------------------------eEEEEeCCCCCceeeEeecC-CCCcCCCCcceEEEEEcCCCCcEEEEEeCC----C
Q 014005 240 ------------------------RINLWNLEISDQCFNIVDMK-PSNMDDLTEVITSAEFHPIYCNLLAYSSSR----G 290 (432)
Q Consensus 240 ------------------------~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----g 290 (432)
.|++||+. ++.....+.+. +..+.+|...+.+++|+||+ +++++.... .
T Consensus 201 ~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~ 278 (719)
T 1z68_A 201 YGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT-YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVS 278 (719)
T ss_dssp CCSSSSCEEEEEECCBTTSCCCEEEEEEEESS-CHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEE
T ss_pred cCCCCCccceeecCCCCCCCCCeeEEEEEECC-CCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeE
Confidence 78889988 44432001111 11234678889999999998 887775433 2
Q ss_pred eEEEEE----ccccccccccceee----cccccccCCccceeeeeccee-----EEEEcCCCCEEEE--e-eC--CeEEE
Q 014005 291 FVRLVD----MRQSALCDHSARIL----RDAAESHGSKSFFTEIIASIS-----DIKFANDGQHLLS--R-DY--MNLKV 352 (432)
Q Consensus 291 ~i~iwd----~~~~~~~~~~~~~~----~~h~~~~~~~~~~~~~~~~v~-----~~~~s~dg~~l~s--~-~~--~~i~i 352 (432)
.|.+|| +.+++. ...+ .+| ...+. .+.|+|||+.|+. + .+ ..|++
T Consensus 279 ~l~~~d~~~~~~~g~~----~~~~~~~~~~~-------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~ 341 (719)
T 1z68_A 279 VLSICDFREDWQTWDC----PKTQEHIEESR-------------TGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHY 341 (719)
T ss_dssp EEEEEEECSSSSSEEC----CGGGEEEEECS-------------SSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEE
T ss_pred EEEEEcccCCCCCCce----EEEEecccccC-------------CceEccccCCccEECCCCCeEEEEEEccCCceEEEE
Confidence 488899 777664 2333 233 45565 7899999996553 3 22 46777
Q ss_pred Eec
Q 014005 353 FRY 355 (432)
Q Consensus 353 wd~ 355 (432)
||+
T Consensus 342 ~~~ 344 (719)
T 1z68_A 342 IKD 344 (719)
T ss_dssp ESS
T ss_pred EEC
Confidence 777
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=2.1e-17 Score=151.52 Aligned_cols=262 Identities=10% Similarity=-0.001 Sum_probs=164.6
Q ss_pred CCCcEEEEEEcCCCCEEEEeccc----ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 31 DVDIVSAIEFDKTGDYLAVGDRG----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
+...+..++|+|+|++|++++.+ +.|.+|+++.... ..+.+.....+.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-----------------------~~~~~~~~~~~~----- 99 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-----------------------TLHLLNTQKTMG----- 99 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-----------------------EEEEEEEEECSS-----
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-----------------------cEEEeeEeccCC-----
Confidence 56677889999999999988875 7999999876310 011223333333
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEe-CCCeEEEEEccCcc-eeeee---ecCCCCccccccccccccccccccCCCC
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQK-VKKIK---EMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 181 (432)
.....+++ +++++++++ .++.|.+|++.... +.... ....... .........+..++|+|+
T Consensus 100 -------~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~spd 165 (361)
T 3scy_A 100 -------ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGP---DKERQTMPHLHCVRITPD 165 (361)
T ss_dssp -------SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCS---CTTTCSSCCEEEEEECTT
T ss_pred -------CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCC---CccccCCCcceEEEECCC
Confidence 44555555 677777775 57899999997432 22111 1111000 000000123466899999
Q ss_pred CcceecceeeccceEEEEeeccccc------ceee---EEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCC
Q 014005 182 FAHGYHLEWTENMATKIANVGNSVH------ARCQ---KVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISD 250 (432)
Q Consensus 182 ~~~~~~~~~~~~~~v~i~d~~~~~~------~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~ 250 (432)
+++++.... .++.+.+|++..... .... ..........+..++|+|+|++++++ .++.|.+||++ .+
T Consensus 166 g~~l~~~~~-~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~-~g 243 (361)
T 3scy_A 166 GKYLLADDL-GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA-DG 243 (361)
T ss_dssp SSEEEEEET-TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE-TT
T ss_pred CCEEEEEeC-CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec-CC
Confidence 997765432 267899999874321 1111 12223455678899999999987765 68999999998 45
Q ss_pred ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeC--CCeEEEEEcc--ccccccccceeecccccccCCccceeee
Q 014005 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEI 326 (432)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~i~iwd~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 326 (432)
.......+. ....+......++|+|++ ++|+++.. ++.|.+|++. +++.. .+..+..
T Consensus 244 ~~~~~~~~~--~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~~--~~~~~~~-------------- 304 (361)
T 3scy_A 244 MLDEIQTVA--ADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTLT--KVGYQLT-------------- 304 (361)
T ss_dssp EEEEEEEEE--SCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCEE--EEEEEEC--------------
T ss_pred ceEEeEEEe--cCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcEE--EeeEecC--------------
Confidence 432211111 113334557899999999 87766655 4899999996 34420 0122211
Q ss_pred ecceeEEEEcCCCCEEEEee-C-CeEEEEec
Q 014005 327 IASISDIKFANDGQHLLSRD-Y-MNLKVFRY 355 (432)
Q Consensus 327 ~~~v~~~~~s~dg~~l~s~~-~-~~i~iwd~ 355 (432)
...+..++|+|||++|++++ + +.|.+|++
T Consensus 305 g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 305 GIHPRNFIITPNGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp SSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred CCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence 24678899999999988864 4 99999876
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=4.6e-17 Score=148.43 Aligned_cols=213 Identities=11% Similarity=0.102 Sum_probs=138.7
Q ss_pred cceeEEEEEEcCCCCEEEEEeC---CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
..+..++| +|+|+ +++++. ++.|.+|++.++....+.....+. ..+..++|+|++.+++.+..
T Consensus 40 ~~p~~~a~--spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~-----------~~p~~~a~spdg~~l~~~~~ 105 (347)
T 3hfq_A 40 QNPTYLAL--SAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG-----------TPPAYVAVDEARQLVYSANY 105 (347)
T ss_dssp SCCCCEEE--CTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEES-----------CCCSEEEEETTTTEEEEEET
T ss_pred CCcceEEE--ccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCC-----------CCCEEEEECCCCCEEEEEeC
Confidence 56778999 89998 555543 689999999877655444322222 56778999999998887763
Q ss_pred eccceEEEEeecccccceeeEEeecC--------CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHA--------HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~ 261 (432)
.++.+.+|++........+..+... ....+.+++|+|+|+.+++. .++.|.+||++..+........
T Consensus 106 -~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~--- 181 (347)
T 3hfq_A 106 -HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL--- 181 (347)
T ss_dssp -TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE---
T ss_pred -CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE---
Confidence 2789999999643233333333111 12358899999999966666 7899999999833332221100
Q ss_pred CcCCCCcceEEEEEcCCCCcEEE-EEeCCCeEEEEEccc--cccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005 262 NMDDLTEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (432)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~i~iwd~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d 338 (432)
. ......+..++|+|+| ++++ ++..++.|.+|++.. ++.. ....+...+.... ....+..++|+||
T Consensus 182 ~-~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~--~~~~~~~~~~~~~-------~~~~~~~i~~spd 250 (347)
T 3hfq_A 182 T-MEAGFGPRHLVFSPDG-QYAFLAGELSSQIASLKYDTQTGAFT--QLGIVKTIPADYT-------AHNGAAAIRLSHD 250 (347)
T ss_dssp E-CCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESSCTTCC-------SCCEEEEEEECTT
T ss_pred E-cCCCCCCceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCceE--EeeeeeecCCCCC-------CCCcceeEEECCC
Confidence 0 1122357889999999 7544 456788999999884 3321 0122222100000 0145888999999
Q ss_pred CCEEEE-ee-CCeEEEEec
Q 014005 339 GQHLLS-RD-YMNLKVFRY 355 (432)
Q Consensus 339 g~~l~s-~~-~~~i~iwd~ 355 (432)
|++|+. +. ++.|.+||+
T Consensus 251 G~~l~v~~~~~~~v~v~~~ 269 (347)
T 3hfq_A 251 GHFLYVSNRGYNTLAVFAV 269 (347)
T ss_dssp SCEEEEEEETTTEEEEEEE
T ss_pred CCEEEEEeCCCCEEEEEEE
Confidence 998854 44 499999998
No 154
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.81 E-value=7.4e-18 Score=175.65 Aligned_cols=245 Identities=11% Similarity=0.067 Sum_probs=179.0
Q ss_pred ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..|...+.++.|+++ .++++++.|++++||.++.... ....+..|.
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~--------------------------~~~~l~~~~------- 245 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK--------------------------DLRKHTSFT------- 245 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC--------------------------SCEECCCCC-------
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC--------------------------cceEecCCC-------
Confidence 467889999999988 6777888889999998864211 112344443
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCC-CCCcceec
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP-PSFAHGYH 187 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~ 187 (432)
.+...+| +|||++++++. ++.|.+|++....+.. +..+..............+..++|+ |++..++.
T Consensus 246 ------~~~~~~~--SpDG~~la~~~-~~~i~~~d~~~~~l~~---l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~ 313 (1045)
T 1k32_A 246 ------DYYPRHL--NTDGRRILFSK-GGSIYIFNPDTEKIEK---IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF 313 (1045)
T ss_dssp ------SSCEEEE--EESSSCEEEEE-TTEEEEECTTTCCEEE---CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE
T ss_pred ------CcceeeE--cCCCCEEEEEe-CCEEEEecCCceEeee---eccCcccccccccccccccceeeecCCCCCEEEE
Confidence 3556789 78999888884 8999999995544332 2211000000000112468899999 99999888
Q ss_pred ceeeccceEEEEeecccccceeeEEeecCCCC-CeeEEEeCCCCCEEEEE-cCCeEE-EEeCCCCCceeeEeecCCCCcC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDF-NINSISNNSDCETFVSA-DDLRIN-LWNLEISDQCFNIVDMKPSNMD 264 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~-~d~~i~-lwd~~~~~~~~~~~~~~~~~~~ 264 (432)
+. ++.+.+|+.. .+.... + ..|.. .+..++|+ +|+.++++ .++.+. +||+. .+.. ..+ .
T Consensus 314 ~~---~~~i~~~~~~---~~~~~~-~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~-~~~~-~~l-------~ 375 (1045)
T 1k32_A 314 VS---RGQAFIQDVS---GTYVLK-V-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR-TGKA-EKF-------E 375 (1045)
T ss_dssp EE---TTEEEEECTT---SSBEEE-C-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT-TCCE-EEC-------C
T ss_pred EE---cCEEEEEcCC---CCceEE-c-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC-CCCc-eEe-------c
Confidence 76 6789999987 333333 3 45666 89999999 99999988 777888 88988 4433 222 4
Q ss_pred CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
+|...+..++|+|+| +.|++++.++.|++||+.+++. ...+.+| ...+..++|||||++|++
T Consensus 376 ~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~----~~~~~~~-------------~~~v~~~~~SpDG~~la~ 437 (1045)
T 1k32_A 376 ENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKP----TVIERSR-------------EAMITDFTISDNSRFIAY 437 (1045)
T ss_dssp CCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE----EEEEECS-------------SSCCCCEEECTTSCEEEE
T ss_pred CCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCce----EEeccCC-------------CCCccceEECCCCCeEEE
Confidence 677789999999999 9999999999999999998875 3555465 678899999999999987
Q ss_pred eeC-----------CeEEEEec
Q 014005 345 RDY-----------MNLKVFRY 355 (432)
Q Consensus 345 ~~~-----------~~i~iwd~ 355 (432)
++. +.|++||+
T Consensus 438 ~~~~~~~~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 438 GFPLKHGETDGYVMQAIHVYDM 459 (1045)
T ss_dssp EEEECSSTTCSCCEEEEEEEET
T ss_pred EecCccccccCCCCCeEEEEEC
Confidence 532 49999999
No 155
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.79 E-value=3.7e-18 Score=171.41 Aligned_cols=254 Identities=9% Similarity=0.113 Sum_probs=163.5
Q ss_pred cEEEEEEcCCCCEEEEeccc---------ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005 34 IVSAIEFDKTGDYLAVGDRG---------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~ 104 (432)
.|.+++|||||++|++++.+ +.+.+||+++++.. .+....+|.
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------------------------~l~~~~~~~--- 113 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-------------------------SLDPPEVSN--- 113 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-------------------------ECCCTTCCS---
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE-------------------------eccCCcccc---
Confidence 48999999999999998764 78899999887521 112223344
Q ss_pred cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccc-ccc----ccccccccccccCC
Q 014005 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS-SEN----TLLAEKNFMNEHNP 179 (432)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~i~~~~~~ 179 (432)
..+..++| +|||++|++++. +.|++||+.+++...+........+. .+. ....-+.+..++|+
T Consensus 114 ---------~~~~~~~~--SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~S 181 (723)
T 1xfd_A 114 ---------AKLQYAGW--GPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS 181 (723)
T ss_dssp ---------CCCSBCCB--CSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC
T ss_pred ---------ccccccEE--CCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEEC
Confidence 55888999 999999999986 79999999988755443321111000 000 00000133679999
Q ss_pred CCCcceecceeec--------------------------------cceEEEEeecccccceeeEEeecC------CCCCe
Q 014005 180 PSFAHGYHLEWTE--------------------------------NMATKIANVGNSVHARCQKVYPHA------HDFNI 221 (432)
Q Consensus 180 ~~~~~~~~~~~~~--------------------------------~~~v~i~d~~~~~~~~~~~~~~~~------~~~~i 221 (432)
|+++.++.+.... +..+.+||+. .+++...+ .. +...+
T Consensus 182 pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~---~~~~~~~l-~~~~~~~~~~~~~ 257 (723)
T 1xfd_A 182 PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN---GPTHDLEM-MPPDDPRMREYYI 257 (723)
T ss_dssp TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS---SSCCCEEC-CCCCCGGGSSEEE
T ss_pred CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC---CCceeEEe-eCCccCCCcccee
Confidence 9999888876421 1278899987 44443444 22 25678
Q ss_pred eEEEeCCCCCEEEEE-c----CCeEEEEeCCCCCceeeEeecCCCCcCCCCcce----EEEEEcCCCCcEEEE--EeCCC
Q 014005 222 NSISNNSDCETFVSA-D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI----TSAEFHPIYCNLLAY--SSSRG 290 (432)
Q Consensus 222 ~~~~~~~~~~~l~~~-~----d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~p~~~~~l~~--~~~dg 290 (432)
..++|+|||+.+++. . +..|++||+. +++....+. ..+...+ ..++|+||| +.|+. +..++
T Consensus 258 ~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~-~g~~~~~~~------~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~ 329 (723)
T 1xfd_A 258 TMVKWATSTKVAVTWLNRAQNVSILTLCDAT-TGVCTKKHE------DESEAWLHRQNEEPVFSKDG-RKFFFIRAIPQG 329 (723)
T ss_dssp EEEEESSSSEEEEEEEETTSCEEEEEEEETT-TCCEEEEEE------EECSSCCCCCCCCCEECTTS-CSEEEEEEECCS
T ss_pred EEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC-CCcceEEEE------eccCCEEeccCCCceEcCCC-CeEEEEEecccC
Confidence 999999999988765 3 2579999998 555554431 1222333 378999999 65554 45677
Q ss_pred ------eEEEEE-cccccc-ccccceeecccccccCCccceeeeecceeE-EEEcCCCCEEEE-eeC---CeEEEEec
Q 014005 291 ------FVRLVD-MRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISD-IKFANDGQHLLS-RDY---MNLKVFRY 355 (432)
Q Consensus 291 ------~i~iwd-~~~~~~-~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~-~~~s~dg~~l~s-~~~---~~i~iwd~ 355 (432)
.|.+|| ..++.. + ...+..+ ...+.. ++|+|||++|+. +.+ +.+++|++
T Consensus 330 ~~~~~~~l~~~d~~~~~~~~~---~~~l~~~-------------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 330 GRGKFYHITVSSSQPNSSNDN---IQSITSG-------------DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp SSSCEEEEEEECSSCCSSSCC---CCBSCCS-------------SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred CCcceeEEEEEeccCCCCccc---eeEeecC-------------CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 567777 343330 0 1233321 233443 699999999875 433 78999998
No 156
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=2.7e-17 Score=151.06 Aligned_cols=252 Identities=8% Similarity=0.014 Sum_probs=162.7
Q ss_pred CcEEEEEEcCCCCEEEEecccceEEEEEec-CCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETV-GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
..+..++|+|+|++|++++.+ .|.+|+++ +++.. .......+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~-------------------------~~~~~~~~----------- 82 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV-------------------------HEASHPIG----------- 82 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE-------------------------EEEEEECC-----------
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE-------------------------EeeEeecC-----------
Confidence 467889999999999998887 99999997 55421 00111111
Q ss_pred hhcceeEEEEEEcCCCCE--EEEEe-------------CCCeEEEEEcc-Ccceeee-eecCCCCccccccccccccccc
Q 014005 112 IEEKINRVRWCAAPNGSM--FILST-------------NDKTIKLWKVR-DQKVKKI-KEMDHFPFVSSENTLLAEKNFM 174 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~--l~s~~-------------~d~~i~iwd~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~ 174 (432)
+....++| +|+|++ ++++. .++.+.+|++. .++.... ...... ....+.
T Consensus 83 --g~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~----------~~~~~~ 148 (365)
T 1jof_A 83 --GHPRANDA--DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQ----------ENTGIH 148 (365)
T ss_dssp --SSGGGGCT--TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECC----------TTCCEE
T ss_pred --CCCccEEE--CCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeC----------CCCcce
Confidence 12344778 899984 44553 68999999997 3543322 111000 114677
Q ss_pred cccCCCCCcceecceeeccceEEEEeec-ccccceeeEEeec-CCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCC-C
Q 014005 175 NEHNPPSFAHGYHLEWTENMATKIANVG-NSVHARCQKVYPH-AHDFNINSISNNSDCETFVSA--DDLRINLWNLEI-S 249 (432)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~v~i~d~~-~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~-~ 249 (432)
.++|+|++++++.... .++.|.+|++. .. ....+..+.. .+...+..++|+|+|++++++ .++.+.+|+++. +
T Consensus 149 ~~~~spdG~~l~~~~~-~~~~v~~~~~~~~g-~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~ 226 (365)
T 1jof_A 149 GMVFDPTETYLYSADL-TANKLWTHRKLASG-EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp EEEECTTSSEEEEEET-TTTEEEEEEECTTS-CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EEEECCCCCEEEEEcC-CCCEEEEEEECCCC-CEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC
Confidence 8999999998876542 25689999997 22 1222233311 245679999999999988876 578999998762 2
Q ss_pred Ccee---eEeecCCCCcCCCCc------ceEEEE-EcCCCCcEEEEEeCC-C-----eEEEEEcc-ccccccccce---e
Q 014005 250 DQCF---NIVDMKPSNMDDLTE------VITSAE-FHPIYCNLLAYSSSR-G-----FVRLVDMR-QSALCDHSAR---I 309 (432)
Q Consensus 250 ~~~~---~~~~~~~~~~~~~~~------~v~~~~-~~p~~~~~l~~~~~d-g-----~i~iwd~~-~~~~~~~~~~---~ 309 (432)
++.. ..+..-+....++.. .+..++ |+|+| ++|++++.+ + .|.+|++. +++. .. .
T Consensus 227 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~~----~~~~~~ 301 (365)
T 1jof_A 227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSI----EKQLFL 301 (365)
T ss_dssp CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCE----EEEEEE
T ss_pred CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCCCE----EEeeee
Confidence 3321 122111111223333 588999 99999 877766543 2 89999996 4543 12 1
Q ss_pred ecccccccCCccceeeeecceeEEEEcC---CCCEEEEee-C-CeEEEEec
Q 014005 310 LRDAAESHGSKSFFTEIIASISDIKFAN---DGQHLLSRD-Y-MNLKVFRY 355 (432)
Q Consensus 310 ~~~h~~~~~~~~~~~~~~~~v~~~~~s~---dg~~l~s~~-~-~~i~iwd~ 355 (432)
...+ ...+..++|+| ||++|++++ + +.|.+|++
T Consensus 302 ~~~~-------------~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 302 SPTP-------------TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp EECS-------------SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred eecC-------------CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 2221 23567789999 899999863 4 89999999
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=2.2e-17 Score=165.90 Aligned_cols=246 Identities=13% Similarity=0.140 Sum_probs=162.2
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
...++.|+|+|++|+++ |++|++||+.+++.. ..+.+|... .. .
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~---------------------------~~~~~~~~~-----~~--~ 61 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS---------------------------VFLENSTFD-----EF--G 61 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE---------------------------EEECTTTTT-----TC--C
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceE---------------------------EEEechhhh-----hh--c
Confidence 45689999999999886 899999999887632 345555410 00 0
Q ss_pred cceeEEEEEEcCCCCEEEEEeCC---------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005 114 EKINRVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
.....++| ||||++++.++.+ +.+.+||+.+++...+.. +. +.+...+|+|+++.
T Consensus 62 ~~~~~~~~--Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~---~~-----------~~~~~~~~SPdG~~ 125 (740)
T 4a5s_A 62 HSINDYSI--SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER---IP-----------NNTQWVTWSPVGHK 125 (740)
T ss_dssp SCCCEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC---CC-----------TTEEEEEECSSTTC
T ss_pred ccccceEE--CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEccc---CC-----------CcceeeEECCCCCE
Confidence 22345888 9999999999876 566799999988654322 22 56888999999999
Q ss_pred eecceeeccceEEEEeecccccceeeEEeecCCCCCe-----------------eEEEeCCCCCEEEEE--cCC------
Q 014005 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNI-----------------NSISNNSDCETFVSA--DDL------ 239 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i-----------------~~~~~~~~~~~l~~~--~d~------ 239 (432)
++.+. ++.|.+|+.. .+...+....++...+ ..+.|+|||+.|+.+ +++
T Consensus 126 la~~~---~~~i~~~~~~---~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~ 199 (740)
T 4a5s_A 126 LAYVW---NNDIYVKIEP---NLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE 199 (740)
T ss_dssp EEEEE---TTEEEEESST---TSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred EEEEE---CCeEEEEECC---CCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEE
Confidence 98774 7899999987 3344333212332222 358999999999976 333
Q ss_pred -----------------------------eEEEEeCCCC---C---ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEE
Q 014005 240 -----------------------------RINLWNLEIS---D---QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (432)
Q Consensus 240 -----------------------------~i~lwd~~~~---~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 284 (432)
+|++||+. + + ....+. .+..+.++...+..++|+||| +.++
T Consensus 200 ~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~-~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~wspdg-~~~~ 275 (740)
T 4a5s_A 200 YSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD-SLSSVTNATSIQIT--APASMLIGDHYLCDVTWATQE-RISL 275 (740)
T ss_dssp EEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETT-SCCSSSCCCEEEEC--CCHHHHTSCEEEEEEEEEETT-EEEE
T ss_pred EEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECC-CCCCCCcceEEEec--CCccCCCCCeEEEEEEEeCCC-eEEE
Confidence 35666666 3 2 111110 000111377789999999999 7666
Q ss_pred EEeC----CCeEEEEEcccccc---ccccceee--cccccccCCccceeeeeccee-----EEEEcCCCCEEE-Eee--C
Q 014005 285 YSSS----RGFVRLVDMRQSAL---CDHSARIL--RDAAESHGSKSFFTEIIASIS-----DIKFANDGQHLL-SRD--Y 347 (432)
Q Consensus 285 ~~~~----dg~i~iwd~~~~~~---~~~~~~~~--~~h~~~~~~~~~~~~~~~~v~-----~~~~s~dg~~l~-s~~--~ 347 (432)
.... +..|++||+.+++. |.. ...+ +.| ..++. .+.|+|||+.|+ ..+ +
T Consensus 276 ~~~~r~~~~~~i~~~d~~tg~~~~~~~~-~~~l~~~~~-------------~~~v~~~~~~~p~fspDG~~l~~~~s~~~ 341 (740)
T 4a5s_A 276 QWLRRIQNYSVMDICDYDESSGRWNCLV-ARQHIEMST-------------TGWVGRFRPSEPHFTLDGNSFYKIISNEE 341 (740)
T ss_dssp EEEESSTTEEEEEEEEEETTTTEEEECG-GGCEEEECS-------------SSCSSSSSCCCCEECTTSSEEEEEEECTT
T ss_pred EEeCCCCCEEEEEEEECCCCccccceeE-EEEeeeccC-------------CceEccCcCCCceEcCCCCEEEEEEEcCC
Confidence 5543 33799999998761 111 1222 232 33443 789999999876 432 2
Q ss_pred --CeEEEEec
Q 014005 348 --MNLKVFRY 355 (432)
Q Consensus 348 --~~i~iwd~ 355 (432)
..|++||+
T Consensus 342 G~~~l~~~~~ 351 (740)
T 4a5s_A 342 GYRHICYFQI 351 (740)
T ss_dssp SCEEEEEEET
T ss_pred CceEEEEEEC
Confidence 57888888
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.75 E-value=1.2e-16 Score=147.92 Aligned_cols=237 Identities=12% Similarity=0.096 Sum_probs=149.5
Q ss_pred EEEcCCCCEEEEecc-cc--eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhc
Q 014005 38 IEFDKTGDYLAVGDR-GG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (432)
Q Consensus 38 ~~fsp~g~~l~t~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (432)
.+|+|||++|+.++. ++ .|.+||+.+++.. ....++. .
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~---------------------------~lt~~~~------------~ 81 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT---------------------------QLTEGRG------------D 81 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE---------------------------ECCCSSC------------B
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE---------------------------EeeeCCC------------C
Confidence 789999999988877 66 4777787776522 2233444 4
Q ss_pred ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccc--cccCCCCCcceecce---
Q 014005 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM--NEHNPPSFAHGYHLE--- 189 (432)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~--- 189 (432)
.+..+.| +||++.|+.++.++.|.+||+.+++...+..... ..+. ...+++++..++...
T Consensus 82 ~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~-------------~~~~~~~~~~~~dg~~l~~~~~~~ 146 (388)
T 3pe7_A 82 NTFGGFL--SPDDDALFYVKDGRNLMRVDLATLEENVVYQVPA-------------EWVGYGTWVANSDCTKLVGIEIRR 146 (388)
T ss_dssp CSSSCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT-------------TEEEEEEEEECTTSSEEEEEEEEG
T ss_pred CccceEE--cCCCCEEEEEeCCCeEEEEECCCCcceeeeechh-------------hcccccceeECCCCCeeccccccC
Confidence 4556789 9999999999999999999999887655543321 1121 122367776665221
Q ss_pred -----------------eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cC------CeEEEE
Q 014005 190 -----------------WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DD------LRINLW 244 (432)
Q Consensus 190 -----------------~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d------~~i~lw 244 (432)
...+..+.+||+. +++..... .+...+..++|+| +|+.++.. .+ ..|.++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~---~g~~~~l~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~ 221 (388)
T 3pe7_A 147 EDWVPLTDWKKFHEFYFTKPCCRLMRVDLK---TGESTVIL--QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLI 221 (388)
T ss_dssp GGCCCCCSHHHHHHHGGGCCCEEEEEEETT---TCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEE
T ss_pred cccccccccchhhhhhccCCcceEEEEECC---CCceEEee--cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEE
Confidence 1114678889987 44443333 4566789999999 99988876 42 367777
Q ss_pred eCCCCCceeeEeecCCCCcCCCC--cceEEEEEcCCCCcEEEEEe-CCC----eEEEEEccccccccccceeeccccccc
Q 014005 245 NLEISDQCFNIVDMKPSNMDDLT--EVITSAEFHPIYCNLLAYSS-SRG----FVRLVDMRQSALCDHSARILRDAAESH 317 (432)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~-~dg----~i~iwd~~~~~~~~~~~~~~~~h~~~~ 317 (432)
|.. .+. ...+ ..+. ..+..+.|+||| +.|+..+ .++ .|++||+.+++.. .+..+.++
T Consensus 222 d~~-~~~-~~~l-------~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~--~l~~~~~~---- 285 (388)
T 3pe7_A 222 NED-GTN-MRKV-------KTHAEGESCTHEFWVPDG-SALVYVSYLKGSPDRFIYSADPETLENR--QLTSMPAC---- 285 (388)
T ss_dssp ETT-SCC-CEES-------CCCCTTEEEEEEEECTTS-SCEEEEEEETTCCCEEEEEECTTTCCEE--EEEEECCE----
T ss_pred eCC-CCc-eEEe-------eeCCCCcccccceECCCC-CEEEEEecCCCCCcceEEEEecCCCceE--EEEcCCCc----
Confidence 776 332 2322 2232 357889999999 6565443 222 3999999987641 01222221
Q ss_pred CCccceeeeecceeEEEEcCCCCEEEEe----------eCCeEEEEec
Q 014005 318 GSKSFFTEIIASISDIKFANDGQHLLSR----------DYMNLKVFRY 355 (432)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~s~dg~~l~s~----------~~~~i~iwd~ 355 (432)
.........+.|+|||++|+.. .+..|++||+
T Consensus 286 ------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~ 327 (388)
T 3pe7_A 286 ------SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM 327 (388)
T ss_dssp ------EEEEECTTSSEEEEEECCC------------CCCCEEEEEET
T ss_pred ------eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec
Confidence 0000112334799999988752 2379999999
No 159
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.75 E-value=1.1e-15 Score=135.28 Aligned_cols=258 Identities=15% Similarity=0.140 Sum_probs=174.4
Q ss_pred chhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCc
Q 014005 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY 91 (432)
Q Consensus 12 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 91 (432)
..|.+...|+.+ .....+-....+++++++|+++++...++.|.+||.+....
T Consensus 11 ~~~~~~~~~g~~--g~~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~------------------------- 63 (286)
T 1q7f_A 11 QRMIYHCKFGEF--GVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK------------------------- 63 (286)
T ss_dssp EEECEEEEECCB--SSSTTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEE-------------------------
T ss_pred ceeEEEEeccCC--CCCCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEE-------------------------
Confidence 345555555643 22334556789999999999888888899999999764321
Q ss_pred ceeeeee------cCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeC-CCeEEEEEccCcceeeeeecCCCCccccc
Q 014005 92 RYKTEFQ------SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSE 164 (432)
Q Consensus 92 ~~~~~~~------~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 164 (432)
..+. ++. ..+..+++. .+++.++++... ++.|.+||.. ++........ .
T Consensus 64 ---~~~~~~~~~~~~~------------~~p~~i~~~-~~~g~l~v~~~~~~~~i~~~d~~-g~~~~~~~~~-~------ 119 (286)
T 1q7f_A 64 ---FQFGECGKRDSQL------------LYPNRVAVV-RNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGAT-I------ 119 (286)
T ss_dssp ---EEECCBSSSTTCB------------SSEEEEEEE-TTTTEEEEEECGGGCEEEEECTT-SCEEEEECTT-T------
T ss_pred ---EEecccCCCcccc------------cCceEEEEE-cCCCeEEEEcCCCCCEEEEECCC-CcEEEEecCc-c------
Confidence 1221 222 467788883 256665555533 7899999944 4422221111 1
Q ss_pred cccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE-cCCeEE
Q 014005 165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDLRIN 242 (432)
Q Consensus 165 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~d~~i~ 242 (432)
...+..+++++++...++... ++.|.+|+.. ++....+. ..+...+..++++++++++++. .++.|+
T Consensus 120 -----~~~~~~i~~~~~g~l~v~~~~--~~~i~~~~~~----g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~ 188 (286)
T 1q7f_A 120 -----LQHPRGVTVDNKGRIIVVECK--VMRVIIFDQN----GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK 188 (286)
T ss_dssp -----CSCEEEEEECTTSCEEEEETT--TTEEEEECTT----SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred -----CCCceEEEEeCCCCEEEEECC--CCEEEEEcCC----CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEE
Confidence 135678889999876665544 6789999864 33444441 1345678999999999877777 799999
Q ss_pred EEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC-eEEEEEccccccccccceeecccccccCCcc
Q 014005 243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-FVRLVDMRQSALCDHSARILRDAAESHGSKS 321 (432)
Q Consensus 243 lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~ 321 (432)
+||.. +..+..+ ...++...+..++++|++ +++++...++ .|.+||.. ++. +..+..+.
T Consensus 189 ~~~~~--g~~~~~~-----~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~-g~~----~~~~~~~~------- 248 (286)
T 1q7f_A 189 VFNYE--GQYLRQI-----GGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQD-GQL----ISALESKV------- 248 (286)
T ss_dssp EEETT--CCEEEEE-----SCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTT-SCE----EEEEEESS-------
T ss_pred EEcCC--CCEEEEE-----ccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCC-CCE----EEEEcccC-------
Confidence 99986 4445444 112333568999999999 8888887776 99999964 443 35554420
Q ss_pred ceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 322 FFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 322 ~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
....+.+++++|+|+++++..+++|++|++
T Consensus 249 ----~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~ 278 (286)
T 1q7f_A 249 ----KHAQCFDVALMDDGSVVLASKDYRLYIYRY 278 (286)
T ss_dssp ----CCSCEEEEEEETTTEEEEEETTTEEEEEEC
T ss_pred ----CCCcceeEEECCCCcEEEECCCCeEEEEEc
Confidence 023477899999999888865699999998
No 160
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.74 E-value=6.7e-16 Score=139.57 Aligned_cols=246 Identities=8% Similarity=0.028 Sum_probs=167.0
Q ss_pred CcEEEEEEcCCCCEEEEecccc------------------------eEEEEEecCCcCCCCccccchhhhcccccccccc
Q 014005 33 DIVSAIEFDKTGDYLAVGDRGG------------------------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSH 88 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~t~~~dg------------------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (432)
+.+.+++++|+|+++++...++ +|.+||.++++.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~---------------------- 81 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI---------------------- 81 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE----------------------
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE----------------------
Confidence 3799999999999998887773 577777765542
Q ss_pred CCcceeeeee-cCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCCCcccccc
Q 014005 89 PEYRYKTEFQ-SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSEN 165 (432)
Q Consensus 89 p~~~~~~~~~-~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~ 165 (432)
...+. ++- .....+++ +++|+++++...++.|++||..... ...+....... .
T Consensus 82 -----~~~~~~~~~------------~~p~gia~--d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g-----~ 137 (329)
T 3fvz_A 82 -----LQSSGKNLF------------YLPHGLSI--DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPG-----S 137 (329)
T ss_dssp -----EEEECTTTC------------SSEEEEEE--CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCC-----C
T ss_pred -----EeccCCCcc------------CCceEEEE--CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCC-----C
Confidence 12222 222 56789999 8999988888889999999986552 22221100000 0
Q ss_pred ccccccccccccCCC-CCcceecce-eeccceEEEEeecccccceeeEEeec---------CCCCCeeEEEeCCC-CCEE
Q 014005 166 TLLAEKNFMNEHNPP-SFAHGYHLE-WTENMATKIANVGNSVHARCQKVYPH---------AHDFNINSISNNSD-CETF 233 (432)
Q Consensus 166 ~~~~~~~i~~~~~~~-~~~~~~~~~-~~~~~~v~i~d~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~-~~~l 233 (432)
....-.....+++++ ++..+++.. . ++.|++|+. .+..+..+.. ++......++++|+ +.++
T Consensus 138 ~~~~~~~P~~ia~~~~~g~lyv~d~~~--~~~I~~~~~----~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~ 211 (329)
T 3fvz_A 138 DQNHFCQPTDVAVEPSTGAVFVSDGYC--NSRIVQFSP----SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLC 211 (329)
T ss_dssp STTCCSSEEEEEECTTTCCEEEEECSS--CCEEEEECT----TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEE
T ss_pred CccccCCCcEEEEeCCCCeEEEEeCCC--CCeEEEEcC----CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEE
Confidence 000013466789998 666666653 4 778999984 3445555411 12234889999998 6666
Q ss_pred EEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe-------CCCeEEEEEccccccccc
Q 014005 234 VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-------SRGFVRLVDMRQSALCDH 305 (432)
Q Consensus 234 ~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~ 305 (432)
++. .++.|++||.+ +++.+..+ ....+...+..++|+| + ..+++.+ .+..|++||..+++.
T Consensus 212 v~d~~~~~I~~~~~~-~G~~~~~~-----~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~--- 280 (329)
T 3fvz_A 212 VADRENGRIQCFKTD-TKEFVREI-----KHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEI--- 280 (329)
T ss_dssp EEETTTTEEEEEETT-TCCEEEEE-----CCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCE---
T ss_pred EEECCCCEEEEEECC-CCcEEEEE-----eccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeE---
Confidence 666 89999999998 66666665 1234556788999999 4 4444443 345899999998876
Q ss_pred cceeec---ccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005 306 SARILR---DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY 355 (432)
Q Consensus 306 ~~~~~~---~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~ 355 (432)
+..+. .| ...+.+++++|+|.++++.. +++|++|++
T Consensus 281 -~~~~~~~~~~-------------~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 281 -IDVFKPVRKH-------------FDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp -EEEECCSSSC-------------CSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred -EEEEcCCCCc-------------cCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 45553 32 46788999999997777754 499999998
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.74 E-value=5.1e-15 Score=135.64 Aligned_cols=212 Identities=8% Similarity=0.035 Sum_probs=132.9
Q ss_pred cceeEEEEEEcCCCCEEEEEeCC----CeEEEEEccC--cceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 114 EKINRVRWCAAPNGSMFILSTND----KTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d----~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
.....++| +|++++|++++.+ +.|.+|++.. +++..+....... .....+++ ++.+++.
T Consensus 50 ~~p~~l~~--spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~-----------~~p~~~~~--dg~~l~~ 114 (361)
T 3scy_A 50 ANPSYLIP--SADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG-----------ADPCYLTT--NGKNIVT 114 (361)
T ss_dssp SCCCSEEE--CTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS-----------SCEEEEEE--CSSEEEE
T ss_pred CCCceEEE--CCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC-----------CCcEEEEE--CCCEEEE
Confidence 66778999 9999999999875 7999999875 5544443332211 23344555 6666665
Q ss_pred ceeeccceEEEEeecccccc-eeeEEee-c--------CCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCc----
Q 014005 188 LEWTENMATKIANVGNSVHA-RCQKVYP-H--------AHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQ---- 251 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~-~~~~~~~-~--------~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~---- 251 (432)
... .++.+.+|++...... ....... . .+...+.+++|+|+|++++++ .++.+.+|+++....
T Consensus 115 ~~~-~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~ 193 (361)
T 3scy_A 115 ANY-SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNK 193 (361)
T ss_dssp EET-TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred EEC-CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccc
Confidence 442 2789999998742111 1111110 1 122346889999999977655 689999999883331
Q ss_pred e-eeEe-ecCCCCcCCCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccceeecccccccCCccceeeeec
Q 014005 252 C-FNIV-DMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (432)
Q Consensus 252 ~-~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 328 (432)
. +... ... .........++.++|+|++ +++++++ .++.|.+||+.+++... +..+... + .+..
T Consensus 194 ~~l~~~~~~~-~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~~---~-------~~~~ 259 (361)
T 3scy_A 194 EKFLTKGTPE-AFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDE--IQTVAAD---T-------VNAQ 259 (361)
T ss_dssp CCCEEEEEEE-EEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEE--EEEEESC---S-------SCCC
T ss_pred cceeeccccc-ceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEE--eEEEecC---C-------CCCC
Confidence 1 1100 000 0012334557899999999 7776666 68999999998765310 1222111 0 0123
Q ss_pred ceeEEEEcCCCCEEEEe--e-CCeEEEEec
Q 014005 329 SISDIKFANDGQHLLSR--D-YMNLKVFRY 355 (432)
Q Consensus 329 ~v~~~~~s~dg~~l~s~--~-~~~i~iwd~ 355 (432)
....++|+|||++|+++ . ++.|.+|++
T Consensus 260 ~~~~i~~spdg~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 260 GSGDIHLSPDGKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp CEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred CcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence 46799999999988653 3 489999999
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.73 E-value=2.2e-16 Score=154.32 Aligned_cols=230 Identities=9% Similarity=0.058 Sum_probs=159.5
Q ss_pred cCC-CcEEEEEEcCCCCEEEEecc---cceEEEEEecC--CcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005 30 QDV-DIVSAIEFDKTGDYLAVGDR---GGRVILFETVG--GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (432)
Q Consensus 30 ~h~-~~V~~~~fsp~g~~l~t~~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~ 103 (432)
.|. ..+.++.|+|+ +++++++. +...+||.++. .... ..+...
T Consensus 61 ~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~---------------------------~~l~~~--- 109 (582)
T 3o4h_A 61 REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEE---------------------------QRLEAV--- 109 (582)
T ss_dssp SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCC---------------------------EECTTS---
T ss_pred cccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcc---------------------------ccccCC---
Confidence 344 58999999999 77777665 45677877654 2211 112111
Q ss_pred ccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (432)
Q Consensus 104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 183 (432)
..+...+|+|++++..+++++.+ .+.+||+.+++...+.... . ..++|+|+++
T Consensus 110 ----------~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~--------------~--~~~~~spDG~ 162 (582)
T 3o4h_A 110 ----------KPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLP--------------G--FGFVSDIRGD 162 (582)
T ss_dssp ----------CSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEES--------------S--CEEEEEEETT
T ss_pred ----------CCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCC--------------C--ceEEECCCCC
Confidence 22345677433333345555544 4559999988766554321 1 6788999999
Q ss_pred ceecceeec--cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCC--eEEEEeCCCCCceeeEeec
Q 014005 184 HGYHLEWTE--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDM 258 (432)
Q Consensus 184 ~~~~~~~~~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~--~i~lwd~~~~~~~~~~~~~ 258 (432)
+++.++... ...+.+||+. .++.. .+ ..+...+..++|+|||+.|+++ .++ .|++||++ +++.. .+
T Consensus 163 ~la~~~~~~~~~~~i~~~d~~---~g~~~-~l-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~-~~~~~-~~-- 233 (582)
T 3o4h_A 163 LIAGLGFFGGGRVSLFTSNLS---SGGLR-VF-DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPR-DGSVE-DL-- 233 (582)
T ss_dssp EEEEEEEEETTEEEEEEEETT---TCCCE-EE-CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTT-TCCEE-EC--
T ss_pred EEEEEEEcCCCCeEEEEEcCC---CCCce-Ee-ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCC-CCcEE-Ec--
Confidence 999777632 1679999987 34433 44 5778889999999999999977 788 89999998 45444 43
Q ss_pred CCCCcCCCCcceEEEE--------EcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecce
Q 014005 259 KPSNMDDLTEVITSAE--------FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (432)
Q Consensus 259 ~~~~~~~~~~~v~~~~--------~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v 330 (432)
..|...+..+. |+||| .++++++.|+.+++|++ ++. .... ...+
T Consensus 234 -----~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~----~~~~----------------~~~v 285 (582)
T 3o4h_A 234 -----ELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GER----VEAP----------------QGNH 285 (582)
T ss_dssp -----CCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEE----ECCC----------------SSEE
T ss_pred -----cCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCe----eccC----------------CCce
Confidence 55665566666 99999 99999999999999999 543 2211 3568
Q ss_pred eEEEEcCCCCEEEEe-eC---CeEEEEec
Q 014005 331 SDIKFANDGQHLLSR-DY---MNLKVFRY 355 (432)
Q Consensus 331 ~~~~~s~dg~~l~s~-~~---~~i~iwd~ 355 (432)
.+++|+ ||++++++ ++ ..+++||.
T Consensus 286 ~~~~~s-dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 286 GRVVLW-RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred EEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence 899999 99988874 44 45777776
No 163
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.72 E-value=1.1e-15 Score=138.19 Aligned_cols=208 Identities=11% Similarity=0.057 Sum_probs=139.1
Q ss_pred cEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeec-CCccccccchhh
Q 014005 34 IVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLE 111 (432)
Q Consensus 34 ~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-h~~~~~~~~~~~ 111 (432)
.+.+++|+|+|+++ +++..++.|.+||+.+++.. ..+.. +.. .
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~~~~--------~ 79 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL---------------------------GRIDLSTPE--------E 79 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE---------------------------EEEECCBTT--------E
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE---------------------------eeEEcCCcc--------c
Confidence 47889999999865 55666889999999876532 22221 100 0
Q ss_pred hhcceeEEEEEEcCCCCEEEEEe------------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCC
Q 014005 112 IEEKINRVRWCAAPNGSMFILST------------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP 179 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 179 (432)
....+..++| +|+++++++++ .++.|.+||+.+++........ ..+..++|+
T Consensus 80 ~~~~~~~~~~--s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--------------~~~~~~~~s 143 (337)
T 1pby_B 80 RVKSLFGAAL--SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--------------RQITMLAWA 143 (337)
T ss_dssp EEECTTCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--------------SSCCCEEEC
T ss_pred ccccccceEE--CCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--------------CCcceeEEC
Confidence 0035678999 89999988886 5799999999887644332221 234555666
Q ss_pred CCCcceecceeeccceEEEEeecccc------------------------------------------------------
Q 014005 180 PSFAHGYHLEWTENMATKIANVGNSV------------------------------------------------------ 205 (432)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~i~d~~~~~------------------------------------------------------ 205 (432)
|++.+++.+ ++.+.+||+....
T Consensus 144 ~dg~~l~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (337)
T 1pby_B 144 RDGSKLYGL----GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRT 219 (337)
T ss_dssp TTSSCEEEE----SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEE
T ss_pred CCCCEEEEe----CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccccccc
Confidence 666655444 2345555543110
Q ss_pred --------cceee-EEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEc
Q 014005 206 --------HARCQ-KVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 276 (432)
Q Consensus 206 --------~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (432)
..+.. ..+ ..+...+.+++|+|++++++++ ++.|.+||++ +++....+ . ....+.+++|+
T Consensus 220 ~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~-~~~~~~~~-------~-~~~~~~~~~~s 288 (337)
T 1pby_B 220 GLLTMDLETGEMAMREV-RIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLE-KNASIKRV-------P-LPHSYYSVNVS 288 (337)
T ss_dssp EEEEEETTTCCEEEEEE-EECSSCEEEEEECTTSSEEEEE-ESEEEEEETT-TTEEEEEE-------E-CSSCCCEEEEC
T ss_pred ceEEEeCCCCCceEeec-CCCCCceeeEEECCCCCEEEEe-CCeEEEEECC-CCcCccee-------c-CCCceeeEEEC
Confidence 11111 111 2233456779999999999888 8999999998 56665554 2 12357889999
Q ss_pred CCCCcEEEEEeCCCeEEEEEccccccccccceeecc
Q 014005 277 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312 (432)
Q Consensus 277 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 312 (432)
|++ ++|++++.++.|.+||+.+++. +..+..
T Consensus 289 ~dg-~~l~~~~~~~~i~v~d~~~~~~----~~~~~~ 319 (337)
T 1pby_B 289 TDG-STVWLGGALGDLAAYDAETLEK----KGQVDL 319 (337)
T ss_dssp TTS-CEEEEESBSSEEEEEETTTCCE----EEEEEC
T ss_pred CCC-CEEEEEcCCCcEEEEECcCCcE----EEEEEc
Confidence 999 8888889999999999998876 455544
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.72 E-value=4.2e-14 Score=129.73 Aligned_cols=216 Identities=8% Similarity=-0.011 Sum_probs=137.2
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEcc-CcceeeeeecCCCCccccccccccccccccccCCCCCcc--eecce-
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH--GYHLE- 189 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~- 189 (432)
..+..++| +|++++|++++.+ .|.+|++. ++++......... +....++++|++++ ++.+.
T Consensus 40 ~~~~~~a~--spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~------------g~~~~~~~spdg~~l~~~~~~~ 104 (365)
T 1jof_A 40 EPISWMTF--DHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG------------GHPRANDADTNTRAIFLLAAKQ 104 (365)
T ss_dssp CCCSEEEE--CTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC------------SSGGGGCTTSCCEEEEEEECSS
T ss_pred CCCcEEEE--CCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC------------CCCccEEECCCCCEEEEEEecC
Confidence 46778999 9999999999887 99999997 6665433222110 23566899999994 44443
Q ss_pred -----ee-----ccceEEEEeeccc-ccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEe
Q 014005 190 -----WT-----ENMATKIANVGNS-VHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV 256 (432)
Q Consensus 190 -----~~-----~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~ 256 (432)
.. .++.+.+|++... .....+..+...+...+.+++|+|+|++++++ .++.|++||++.+++.....
T Consensus 105 ~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~ 184 (365)
T 1jof_A 105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG 184 (365)
T ss_dssp TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred CcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEee
Confidence 11 3788999999732 11112222212356689999999999988876 57899999997223322111
Q ss_pred ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeC-CCeEEEEEcc--ccccccccceeecccccccCCccceeeeec-----
Q 014005 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIA----- 328 (432)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~----- 328 (432)
.+ ....+...++.++|+|+| +++++++. ++.|.+|++. +++.... ...+...+. . +.++..
T Consensus 185 ~~---~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~-~~~~~~~~~---~---~~g~~~~~~~~ 253 (365)
T 1jof_A 185 SV---DAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYT-HHSFPLIPP---G---IPDRDPETGKG 253 (365)
T ss_dssp EE---ECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEE-EEEEESSCT---T---CCCBCTTTSSB
T ss_pred eE---ecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEc-cceEEcCCC---C---cCCcccccccc
Confidence 00 111235668999999999 88877764 7899999875 4442100 011111000 0 000111
Q ss_pred -ceeEEE-EcCCCCEEEEee--CC-----eEEEEec
Q 014005 329 -SISDIK-FANDGQHLLSRD--YM-----NLKVFRY 355 (432)
Q Consensus 329 -~v~~~~-~s~dg~~l~s~~--~~-----~i~iwd~ 355 (432)
.+..++ |+|||++|++++ .+ .|.+|++
T Consensus 254 ~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 254 LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred cccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence 578999 999999887643 23 8999998
No 165
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.71 E-value=2.7e-15 Score=148.98 Aligned_cols=257 Identities=9% Similarity=0.031 Sum_probs=163.4
Q ss_pred cCCCcEEEEEEcCCCCEEEEe--cccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 30 QDVDIVSAIEFDKTGDYLAVG--DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
.|...|..++|++++-+++.. +.++...||....+.. ...+..|.
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------~~~l~~~~------ 67 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA---------------------------EESALPAP------ 67 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC---------------------------EEESSCTT------
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC---------------------------cceeCCCC------
Confidence 467899999999887777776 6688999999743321 12333443
Q ss_pred chhhhhccee---------EEEEEEcCCCCE-EEEEeC-CCeEEEEEcc--C-cceeeeeecCC--CCcccccccccccc
Q 014005 108 KSLEIEEKIN---------RVRWCAAPNGSM-FILSTN-DKTIKLWKVR--D-QKVKKIKEMDH--FPFVSSENTLLAEK 171 (432)
Q Consensus 108 ~~~~~~~~v~---------~l~~~~s~~~~~-l~s~~~-d~~i~iwd~~--~-~~~~~~~~~~~--~~~~~~~~~~~~~~ 171 (432)
..+. ...|..||||+. |+.++. +..|.++++. + +....+..... +. .
T Consensus 68 ------~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~-----------~ 130 (662)
T 3azo_A 68 ------WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGG-----------L 130 (662)
T ss_dssp ------CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTC-----------E
T ss_pred ------ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCC-----------c
Confidence 2233 455632489998 776653 5667777766 3 44333322110 12 4
Q ss_pred ccccccCCCCCcceecceeec--------cceEEEEeecccc--c-ceeeEEeec-CCCCCeeEEEeCCCCCEEEEE-cC
Q 014005 172 NFMNEHNPPSFAHGYHLEWTE--------NMATKIANVGNSV--H-ARCQKVYPH-AHDFNINSISNNSDCETFVSA-DD 238 (432)
Q Consensus 172 ~i~~~~~~~~~~~~~~~~~~~--------~~~v~i~d~~~~~--~-~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~-~d 238 (432)
.+..++|+|+++.++...... ...|.+||+.... . +.. +.+ . .+...+..++|+|||+.|+.+ .+
T Consensus 131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l-~~~~~~~~~~~~~SpDG~~la~~~~~ 208 (662)
T 3azo_A 131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-REL-SDDAHRFVTGPRLSPDGRQAVWLAWD 208 (662)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EES-SCSCSSEECCCEECTTSSEEEEEEEC
T ss_pred cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEE-EecCCCcccCceECCCCCEEEEEECC
Confidence 677899999999998877621 1588999987410 0 232 333 3 455678889999999999876 44
Q ss_pred --------CeEEEEeCCCCC---ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC--eEEEEEccccccccc
Q 014005 239 --------LRINLWNLEISD---QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLVDMRQSALCDH 305 (432)
Q Consensus 239 --------~~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~ 305 (432)
..|++||++.++ ....+. ..+...+..+.|+||| +++++++.++ .|.+||+.+++.
T Consensus 209 ~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-------~~~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~~--- 277 (662)
T 3azo_A 209 HPRMPWEGTELKTARVTEDGRFADTRTLL-------GGPEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDPATGAA--- 277 (662)
T ss_dssp TTCCTTTCEEEEEEEECTTSCEEEEEEEE-------EETTBCEEEEEECTTS-CEEEEECTTSSCEEEEECTTTCCE---
T ss_pred CCCCCCCCcEEEEEEECCCCcccccEEeC-------CCCCceEcceEECCCC-eEEEEECCCCCeEEEEEECCCCce---
Confidence 379999998323 333322 3456789999999999 7888888888 666667655553
Q ss_pred cceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 306 SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 306 ~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
......+ ..... ......+..++|+|++++++++..+.++||.+
T Consensus 278 -~~l~~~~-~~~~~----p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (662)
T 3azo_A 278 -TQLCRRE-EEFAG----PLWTPGMRWFAPLANGLIAVVHGKGAAVLGIL 321 (662)
T ss_dssp -EESSCCS-SBSSC----CCCSTTCCSEEECTTSCEEEEEBSSSCEEEEE
T ss_pred -eeccccc-ccccC----ccccccCceEeEeCCCEEEEEEEcCccEEEEE
Confidence 1222221 00000 00011256789999999998874488888844
No 166
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.70 E-value=2.2e-16 Score=158.31 Aligned_cols=249 Identities=10% Similarity=0.067 Sum_probs=158.9
Q ss_pred EEEEEEcCCCCEEEEecc---------cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 35 VSAIEFDKTGDYLAVGDR---------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 35 V~~~~fsp~g~~l~t~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
|.+++|||||++||+++. ++.|++||+++++.... ..+ .
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-------------------------~~l---~---- 109 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-------------------------NEL---P---- 109 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-------------------------SCC---C----
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-------------------------eec---C----
Confidence 889999999999998876 78999999988753100 011 1
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCc-cc-cccccc----cccccccccCC
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF-VS-SENTLL----AEKNFMNEHNP 179 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~-~~~~~~----~~~~i~~~~~~ 179 (432)
..+..++| +|||+.|+++. ++.|++|++.+++...+... .+.. +. ...... ..+....++|+
T Consensus 110 --------~~~~~~~~--SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~-~~~~~v~~g~~~~v~~ee~~~~~~~~~wS 177 (719)
T 1z68_A 110 --------RPIQYLCW--SPVGSKLAYVY-QNNIYLKQRPGDPPFQITFN-GRENKIFNGIPDWVYEEEMLATKYALWWS 177 (719)
T ss_dssp --------SSBCCEEE--CSSTTCEEEEE-TTEEEEESSTTSCCEECCCC-CBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred --------cccccceE--CCCCCEEEEEE-CCeEEEEeCCCCCcEEEecC-CCcCCeEcccccceeeeecccCcccEEEC
Confidence 45788999 99999999986 78999999988775443211 1110 00 000000 00122579999
Q ss_pred CCCcceecceeec--------------------------------cceEEEEeecccccceee---EE-----eecCCCC
Q 014005 180 PSFAHGYHLEWTE--------------------------------NMATKIANVGNSVHARCQ---KV-----YPHAHDF 219 (432)
Q Consensus 180 ~~~~~~~~~~~~~--------------------------------~~~v~i~d~~~~~~~~~~---~~-----~~~~~~~ 219 (432)
|+++.++.++... ...+.+||+.. ++.. .. + .+|..
T Consensus 178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~---~~~~~~~~~~~~~~~-~~~~~ 253 (719)
T 1z68_A 178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY---PAYVGPQEVPVPAMI-ASSDY 253 (719)
T ss_dssp TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC---HHHHCCEECCCCHHH-HTSCE
T ss_pred CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC---CCccceeEccCCccC-CCCcc
Confidence 9999998877521 12788999873 3321 11 2 35777
Q ss_pred CeeEEEeCCCCCEEEEE-cC----CeEEEEe----CCCCCceeeEeecCCCCcCCCCcceE-----EEEEcCCCCcEEE-
Q 014005 220 NINSISNNSDCETFVSA-DD----LRINLWN----LEISDQCFNIVDMKPSNMDDLTEVIT-----SAEFHPIYCNLLA- 284 (432)
Q Consensus 220 ~i~~~~~~~~~~~l~~~-~d----~~i~lwd----~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~p~~~~~l~- 284 (432)
.+.+++|+||++++++. .. ..|.+|| .+ +++...++. .....|...+. .+.|+|+| +.|+
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~-~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~spdg-~~l~~ 328 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ-TWDCPKTQE---HIEESRTGWAGGFFVSTPVFSYDA-ISYYK 328 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS-SEECCGGGE---EEEECSSSCSSSSSCCCCEECTTS-SCEEE
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC-CCceEEEEe---cccccCCceEccccCCccEECCCC-CeEEE
Confidence 89999999998777764 32 2488899 66 444333210 00024555555 78999999 6443
Q ss_pred -EEeCCC--eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-eeC-----CeEEEEec
Q 014005 285 -YSSSRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY-----MNLKVFRY 355 (432)
Q Consensus 285 -~~~~dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~-----~~i~iwd~ 355 (432)
++..+| .|.+||+.+++. ..+..+ ...+..+.++ +|+.|+. +.+ +..++|.+
T Consensus 329 ~~~~~~g~~~l~~~~~~~~~~-----~~lt~~-------------~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~ 389 (719)
T 1z68_A 329 IFSDKDGYKHIHYIKDTVENA-----IQITSG-------------KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRI 389 (719)
T ss_dssp EEECTTSCEEEEEESSCSTTC-----EECSCS-------------SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred EEEccCCceEEEEEECCCCce-----EecccC-------------ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEE
Confidence 344555 577777766552 445443 3456777777 7776665 432 78899988
No 167
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.68 E-value=3.3e-15 Score=135.93 Aligned_cols=203 Identities=10% Similarity=0.052 Sum_probs=139.7
Q ss_pred cEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCC-ccccccchhh
Q 014005 34 IVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE-PEFDYLKSLE 111 (432)
Q Consensus 34 ~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~-~~~~~~~~~~ 111 (432)
.+..++|+|+|+++ +++..++.|.+||+.+++.. ..+.... +. .
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~---------------------------~~~~~~~~~~-------~ 89 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT---------------------------FHANLSSVPG-------E 89 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE---------------------------EEEESCCSTT-------E
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE---------------------------EEEEcccccc-------c
Confidence 57789999999865 45567899999999876532 2222111 00 0
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCC------------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCC
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTND------------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP 179 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 179 (432)
....+..++| +|+|+++++++.+ +.|.+||+.+++..........+ ..+.+++|+
T Consensus 90 ~~~~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----------~~~~~~~~s 156 (349)
T 1jmx_B 90 VGRSMYSFAI--SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-----------RQVYLMRAA 156 (349)
T ss_dssp EEECSSCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-----------SSCCCEEEC
T ss_pred ccccccceEE--CCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-----------CcccceeEC
Confidence 0034778999 8999999998865 89999999876532211111111 357788899
Q ss_pred CCCcceecceeeccceEEEEeecccccceeeEEeecC-------------------------------------------
Q 014005 180 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHA------------------------------------------- 216 (432)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~------------------------------------------- 216 (432)
|++. ++.+ ++.+.+||.. +++....+..+
T Consensus 157 ~dg~-l~~~----~~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 228 (349)
T 1jmx_B 157 DDGS-LYVA----GPDIYKMDVK---TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 228 (349)
T ss_dssp TTSC-EEEE----SSSEEEECTT---TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred CCCc-EEEc----cCcEEEEeCC---CCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence 9998 5443 3458889886 33333333111
Q ss_pred ------------------------CCCCeeEEEeCC-CCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceE
Q 014005 217 ------------------------HDFNINSISNNS-DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (432)
Q Consensus 217 ------------------------~~~~i~~~~~~~-~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (432)
+...+..++++| ++++++++ ++.|.+||++ +++....+ . ....+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~-~~~~~~~~-------~-~~~~~~ 298 (349)
T 1jmx_B 229 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLK-QRKLIKAA-------N-LDHTYY 298 (349)
T ss_dssp CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETT-TTEEEEEE-------E-CSSCCC
T ss_pred cccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECc-cCeEEEEE-------c-CCCCcc
Confidence 112456778889 99999988 8999999999 56665554 1 123467
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 272 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
+++|+|++ +.|++++.++.|.+||+.+++.
T Consensus 299 ~~~~s~dg-~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 299 CVAFDKKG-DKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp EEEECSSS-SCEEEESBSSEEEEEETTTTEE
T ss_pred ceEECCCC-CEEEEecCCCeEEEEeccccce
Confidence 89999999 7777788899999999998775
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.68 E-value=9.7e-16 Score=141.81 Aligned_cols=250 Identities=9% Similarity=-0.005 Sum_probs=153.0
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
.+..+.|+|+|+.|+.++.++.|++||+.+++.. ..+..+.
T Consensus 82 ~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~---------------------------~~~~~~~------------ 122 (388)
T 3pe7_A 82 NTFGGFLSPDDDALFYVKDGRNLMRVDLATLEEN---------------------------VVYQVPA------------ 122 (388)
T ss_dssp CSSSCEECTTSSEEEEEETTTEEEEEETTTCCEE---------------------------EEEECCT------------
T ss_pred CccceEEcCCCCEEEEEeCCCeEEEEECCCCcce---------------------------eeeechh------------
Confidence 4446789999999999999999999999887532 2233333
Q ss_pred cceeEEEEEEcCCCCEEEEE----------------------eCCCeEEEEEccCcceeeeeecCCCCcccccccccccc
Q 014005 114 EKINRVRWCAAPNGSMFILS----------------------TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 171 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~----------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (432)
..+....|..++++.+++.. ..+..|.+||+.+++...+.... .
T Consensus 123 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--------------~ 188 (388)
T 3pe7_A 123 EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN--------------Q 188 (388)
T ss_dssp TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES--------------S
T ss_pred hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC--------------c
Confidence 44444444447899887742 24478999999988766554322 4
Q ss_pred ccccccCCC-CCcceecceeec----cceEEEEeecccccceeeEEeecCCC--CCeeEEEeCCCCCEEEEE--cCC---
Q 014005 172 NFMNEHNPP-SFAHGYHLEWTE----NMATKIANVGNSVHARCQKVYPHAHD--FNINSISNNSDCETFVSA--DDL--- 239 (432)
Q Consensus 172 ~i~~~~~~~-~~~~~~~~~~~~----~~~v~i~d~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~--~d~--- 239 (432)
.+..+.|+| ++..++...... ...+.++|.. ... .+.+ ..+. ..+...+|+|+|+.|+.. .++
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~---~~~-~~~l-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 263 (388)
T 3pe7_A 189 WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED---GTN-MRKV-KTHAEGESCTHEFWVPDGSALVYVSYLKGSPD 263 (388)
T ss_dssp CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT---SCC-CEES-CCCCTTEEEEEEEECTTSSCEEEEEEETTCCC
T ss_pred cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC---CCc-eEEe-eeCCCCcccccceECCCCCEEEEEecCCCCCc
Confidence 567889999 998887665422 2256666654 222 2333 2233 357788999999977653 322
Q ss_pred -eEEEEeCCCCCceeeEeecCCCCcCCCCcc---eEEEEEcCCCCcEEEEE---------eCCCeEEEEEcccccccccc
Q 014005 240 -RINLWNLEISDQCFNIVDMKPSNMDDLTEV---ITSAEFHPIYCNLLAYS---------SSRGFVRLVDMRQSALCDHS 306 (432)
Q Consensus 240 -~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~p~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~ 306 (432)
.|++||+. +++...+.. ..++... ...+.|+|+| +.|+.. ..+..|++||+.+++.
T Consensus 264 ~~l~~~d~~-~g~~~~l~~-----~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~---- 332 (388)
T 3pe7_A 264 RFIYSADPE-TLENRQLTS-----MPACSHLMSNYDGSLMVGDG-SDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ---- 332 (388)
T ss_dssp EEEEEECTT-TCCEEEEEE-----ECCEEEEEECTTSSEEEEEE-CCC------------CCCCEEEEEETTTTEE----
T ss_pred ceEEEEecC-CCceEEEEc-----CCCceeeeecCCCCeEccCC-CcceeEeeeccccccCCCCEEEEEeccCCce----
Confidence 39999998 454322221 1221100 1123799999 666643 4566899999998764
Q ss_pred ceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC--CeEEEEec
Q 014005 307 ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKVFRY 355 (432)
Q Consensus 307 ~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~--~~i~iwd~ 355 (432)
..+..|..... ..+.+....+..++|+|||++|+..++ +...||.+
T Consensus 333 -~~l~~~~~~~~--~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 333 -HRVARHDTSWK--VFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp -EEEEECCCCCC--CBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred -EEeccccCccc--ccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 45554310000 000000114778899999998887533 66666655
No 169
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.68 E-value=4.5e-14 Score=125.50 Aligned_cols=240 Identities=8% Similarity=-0.056 Sum_probs=164.5
Q ss_pred CCCcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 31 DVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 31 h~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
+.....++.|+|+|+ +++++..++.|..|+.+++ . ..+..+.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~----------------------------~~~~~~~-------- 68 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L----------------------------SPEMHPS-------- 68 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E----------------------------EEEESSC--------
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e----------------------------EEEECCC--------
Confidence 455678999999998 7788888999999998775 1 3455555
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec--
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH-- 187 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-- 187 (432)
..+.++++ +++|+++++...++.|.+||..+++...+...... .....+..+++++++.+.++
T Consensus 69 ----~~~~~l~~--~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~---------~~~~~~~~i~~d~~G~l~vtd~ 133 (296)
T 3e5z_A 69 ----HHQNGHCL--NKQGHLIACSHGLRRLERQREPGGEWESIADSFEG---------KKLNSPNDVCLAPDGSLWFSDP 133 (296)
T ss_dssp ----SSEEEEEE--CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT---------EECCCCCCEEECTTSCEEEEEC
T ss_pred ----CCcceeeE--CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC---------CCCCCCCCEEECCCCCEEEECC
Confidence 67889999 89999887777778999999987775544221100 01135677899999987775
Q ss_pred --ceee---------ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCce---
Q 014005 188 --LEWT---------ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC--- 252 (432)
Q Consensus 188 --~~~~---------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~--- 252 (432)
+... ..+.-.||.+... ++ ...+ ..+....+.++|+|+++.+++. .++.|.+||++..+..
T Consensus 134 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~-~~~~-~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~ 209 (296)
T 3e5z_A 134 TYGIDKPEEGYGGEMELPGRWVFRLAPD--GT-LSAP-IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQ 209 (296)
T ss_dssp SHHHHCGGGSSCCCCCSSSCEEEEECTT--SC-EEEE-ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEE
T ss_pred ccccccccccccccccCCCcEEEEECCC--CC-EEEe-ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCC
Confidence 3210 0112245555421 22 2233 3556678899999999998666 7899999999733333
Q ss_pred eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeE
Q 014005 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (432)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~ 332 (432)
...+ ..+...+..++++++| ++.++. ++.|.+||.. ++. +..+..+ .. +.+
T Consensus 210 ~~~~-------~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~-g~~----~~~~~~~-------------~~-~~~ 260 (296)
T 3e5z_A 210 GVHF-------TVEPGKTDGLRVDAGG-LIWASA--GDGVHVLTPD-GDE----LGRVLTP-------------QT-TSN 260 (296)
T ss_dssp EEEE-------CCSSSCCCSEEEBTTS-CEEEEE--TTEEEEECTT-SCE----EEEEECS-------------SC-CCE
T ss_pred CeEe-------eCCCCCCCeEEECCCC-CEEEEc--CCeEEEECCC-CCE----EEEEECC-------------CC-cee
Confidence 2222 2234456789999999 766655 8899999986 554 4666653 34 889
Q ss_pred EEE-cCCCCEEEEeeCCeEEEEec
Q 014005 333 IKF-ANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 333 ~~~-s~dg~~l~s~~~~~i~iwd~ 355 (432)
++| +|+++.|..++.+.+.-++.
T Consensus 261 ~~f~~~d~~~L~v~t~~~l~~~~~ 284 (296)
T 3e5z_A 261 LCFGGPEGRTLYMTVSTEFWSIET 284 (296)
T ss_dssp EEEESTTSCEEEEEETTEEEEEEC
T ss_pred EEEECCCCCEEEEEcCCeEEEEEc
Confidence 999 68999888876665555555
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.68 E-value=4e-15 Score=137.92 Aligned_cols=244 Identities=12% Similarity=0.040 Sum_probs=154.3
Q ss_pred cEEEEEEcCCCCEEEEeccc---ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 34 IVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
.+.+++|+|+|++|+.+... ..|.+||+.+++.. .+..+.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~----------------------------~l~~~~--------- 79 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV----------------------------QLTEGK--------- 79 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE----------------------------ECCCSS---------
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE----------------------------EeecCC---------
Confidence 36778999999998776442 36888888776421 222222
Q ss_pred hhhcc-eeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccc--------cccccccccCCCC
Q 014005 111 EIEEK-INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL--------AEKNFMNEHNPPS 181 (432)
Q Consensus 111 ~~~~~-v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~ 181 (432)
.. ...+.| +|||++|+.++.++.|.+||+.+++...+....... ....+.. .........++|+
T Consensus 80 ---~~~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~--~~~g~~l~~~~~~~~~~~~~~~~~~spd 152 (396)
T 3c5m_A 80 ---GDNTFGGFI--STDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEW--KGYGTWVANSDCTKLVGIEILKRDWQPL 152 (396)
T ss_dssp ---CBCTTTCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE--EEEEEEEECTTSSEEEEEEEEGGGCCCC
T ss_pred ---CCccccceE--CCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccccc--CCCCCEEEeccCCccccccccccccCCC
Confidence 22 234789 899999999999999999999988765554422110 0000000 0000011578888
Q ss_pred Ccceeccee---eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cC------CeEEEEeCCCCC
Q 014005 182 FAHGYHLEW---TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DD------LRINLWNLEISD 250 (432)
Q Consensus 182 ~~~~~~~~~---~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d------~~i~lwd~~~~~ 250 (432)
+..++.... ..+..+.+||+. .++..... .+...+..+.|+| ++..++.. .+ ..|.+||++ .+
T Consensus 153 g~~~~~~~~~~~~~~~~l~~~d~~---~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-~~ 226 (396)
T 3c5m_A 153 TSWEKFAEFYHTNPTCRLIKVDIE---TGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED-GS 226 (396)
T ss_dssp CSHHHHHHHHHTCCCEEEEEEETT---TCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT-SC
T ss_pred CcceeeeeeccCCCcceEEEEECC---CCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC-CC
Confidence 887765531 226688999987 44444433 4566789999999 78777655 32 468888887 33
Q ss_pred ceeeEeecCCCCcCCC-CcceEEEEEcCCCCcEEEEEeCC-----CeEEEEEccccccccccceeecccccccCCcccee
Q 014005 251 QCFNIVDMKPSNMDDL-TEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (432)
Q Consensus 251 ~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 324 (432)
...... ... ...+..+.|+|++ +.|+.++.+ +.|++||+.+++. ..+...
T Consensus 227 ~~~~l~-------~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~-----~~l~~~----------- 282 (396)
T 3c5m_A 227 NVRKIK-------EHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLEN-----EEVMVM----------- 282 (396)
T ss_dssp CCEESS-------CCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCE-----EEEEEC-----------
T ss_pred ceeEee-------ccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCe-----EEeeeC-----------
Confidence 322211 211 2358889999999 766666543 4599999988764 222221
Q ss_pred eeecceeEEEEcC-CCCEEEEee-----------------CCeEEEEec
Q 014005 325 EIIASISDIKFAN-DGQHLLSRD-----------------YMNLKVFRY 355 (432)
Q Consensus 325 ~~~~~v~~~~~s~-dg~~l~s~~-----------------~~~i~iwd~ 355 (432)
.... +.|+| ||++++.+. +..|++||+
T Consensus 283 ---~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 283 ---PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp ---CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred ---CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 1122 89999 999888642 278999998
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=8.6e-14 Score=138.16 Aligned_cols=198 Identities=8% Similarity=0.009 Sum_probs=130.6
Q ss_pred cceeEEEEEEcCCCCEEEEEeCC----------CeEEEEEccC------cceeeeeecCCCCcccccccccccccccccc
Q 014005 114 EKINRVRWCAAPNGSMFILSTND----------KTIKLWKVRD------QKVKKIKEMDHFPFVSSENTLLAEKNFMNEH 177 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d----------~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 177 (432)
..+..++| +|||+.|++++.+ ..|.+||+.+ ++...+.. .+. ..+..++
T Consensus 130 ~~~~~~~~--spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~--~~~-----------~~~~~~~ 194 (662)
T 3azo_A 130 LRWADPVL--LPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD--DAH-----------RFVTGPR 194 (662)
T ss_dssp EEEEEEEE--ETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC--SCS-----------SEECCCE
T ss_pred ccccCcEE--CCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe--cCC-----------CcccCce
Confidence 67889999 8999999998876 5899999988 65444320 112 4677889
Q ss_pred CCCCCcceecceeec------cceEEEEeecc-cccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCC--eEEEEeCC
Q 014005 178 NPPSFAHGYHLEWTE------NMATKIANVGN-SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL--RINLWNLE 247 (432)
Q Consensus 178 ~~~~~~~~~~~~~~~------~~~v~i~d~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~--~i~lwd~~ 247 (432)
|+|++++++...... ...|.+||+.. .......... ..+...+..++|+|||++++++ .++ .|.+||+.
T Consensus 195 ~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~ 273 (662)
T 3azo_A 195 LSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPA 273 (662)
T ss_dssp ECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTT
T ss_pred ECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC-CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECC
Confidence 999999998776521 24799999872 2111333433 4567889999999999977777 777 56666665
Q ss_pred CCCceeeEeecCCCCcCCCCc--------ceEEEEEcCCCCcEEEEEeCCCeEEEE--Eccccccccccceeeccccccc
Q 014005 248 ISDQCFNIVDMKPSNMDDLTE--------VITSAEFHPIYCNLLAYSSSRGFVRLV--DMRQSALCDHSARILRDAAESH 317 (432)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~p~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~h~~~~ 317 (432)
+++...+. ..+.. .+..++|+|++ +++++++. +.++|| |+.+++ .+.+..|
T Consensus 274 -~~~~~~l~-------~~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~~~-----~~~l~~~---- 334 (662)
T 3azo_A 274 -TGAATQLC-------RREEEFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILDPESGE-----LVDAAGP---- 334 (662)
T ss_dssp -TCCEEESS-------CCSSBSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEETTTTE-----EEECCSS----
T ss_pred -CCceeecc-------cccccccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEEECCCCc-----EEEecCC----
Confidence 34433322 11111 15678999998 89999988 999999 554444 3556554
Q ss_pred CCccceeeeecceeEE-EEcCCCCEEEEeeC---CeEEEEec
Q 014005 318 GSKSFFTEIIASISDI-KFANDGQHLLSRDY---MNLKVFRY 355 (432)
Q Consensus 318 ~~~~~~~~~~~~v~~~-~~s~dg~~l~s~~~---~~i~iwd~ 355 (432)
...+..+ +++++..++++++. ..|.+||+
T Consensus 335 ---------~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~ 367 (662)
T 3azo_A 335 ---------WTEWAATLTVSGTRAVGVAASPRTAYEVVELDT 367 (662)
T ss_dssp ---------CCEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred ---------CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence 4556655 44433333333433 35666666
No 172
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.63 E-value=6.4e-14 Score=140.06 Aligned_cols=244 Identities=9% Similarity=0.045 Sum_probs=162.5
Q ss_pred CCcEEEEEEcCCCCEEEEecccc-----eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGG-----RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
...+..++|||||++||.+..++ +|++||+.+++.. .. ....
T Consensus 124 ~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~---------------------------~~-~~~~----- 170 (710)
T 2xdw_A 124 TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL---------------------------PD-VLER----- 170 (710)
T ss_dssp CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE---------------------------EE-EEEE-----
T ss_pred CEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC---------------------------cc-cccC-----
Confidence 34688999999999998765543 8999999887632 11 1111
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeCCCe----------------EEEEEccCccee--eeeecCCCCccccccccc
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKT----------------IKLWKVRDQKVK--KIKEMDHFPFVSSENTLL 168 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~----------------i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~ 168 (432)
..+..++| +|||+.|+.++.++. |++|++.+++.. .+.....++
T Consensus 171 -------~~~~~~~w--spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~--------- 232 (710)
T 2xdw_A 171 -------VKFSCMAW--THDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEP--------- 232 (710)
T ss_dssp -------ECSCCEEE--CTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCT---------
T ss_pred -------cccceEEE--EeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCC---------
Confidence 33667999 999999999987765 999999877632 222222122
Q ss_pred cccccccccCCCCCcceecceeec---cceEEEEeecccc---cce-eeEEeecCCCCCeeEEEeCCCCCEEEEE-c---
Q 014005 169 AEKNFMNEHNPPSFAHGYHLEWTE---NMATKIANVGNSV---HAR-CQKVYPHAHDFNINSISNNSDCETFVSA-D--- 237 (432)
Q Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~~~---~~~v~i~d~~~~~---~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~--- 237 (432)
..+..+.|+|++++++...... +..+.+||+.... .+. ..+.+ ..+...+.. .|+|+|+.|+.. .
T Consensus 233 --~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l-~~~~~~~~~-~~s~dg~~l~~~s~~~~ 308 (710)
T 2xdw_A 233 --KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL-IDNFEGEYD-YVTNEGTVFTFKTNRHS 308 (710)
T ss_dssp --TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE-ECSSSSCEE-EEEEETTEEEEEECTTC
T ss_pred --eEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe-eCCCCcEEE-EEeccCCEEEEEECCCC
Confidence 3456789999999988776522 4688999987310 021 23344 344444444 478888877754 3
Q ss_pred -CCeEEEEeCCCCCc-eeeEeecCCCCcCCCC--cceEEEEEcCCCCcEEEEEeCCCe--EEEEEccccccccccceeec
Q 014005 238 -DLRINLWNLEISDQ-CFNIVDMKPSNMDDLT--EVITSAEFHPIYCNLLAYSSSRGF--VRLVDMRQSALCDHSARILR 311 (432)
Q Consensus 238 -d~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~ 311 (432)
++.|.+||+..... ..+.+ ..+. ..+..+.|++++ .++++...|+. |.+||+.+++. .+.+.
T Consensus 309 ~~~~l~~~d~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g~~----~~~l~ 376 (710)
T 2xdw_A 309 PNYRLINIDFTDPEESKWKVL-------VPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATGAL----LKIFP 376 (710)
T ss_dssp TTCEEEEEETTSCCGGGCEEE-------ECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTCCE----EEEEC
T ss_pred CCCEEEEEeCCCCCcccceec-------cCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCCCE----EEecC
Confidence 34699999983321 12222 2332 368889999777 88888888885 56667656654 35555
Q ss_pred ccccccCCccceeeeecceeEEEEcCCCCEEEE---e-eC-CeEEEEec
Q 014005 312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLS---R-DY-MNLKVFRY 355 (432)
Q Consensus 312 ~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s---~-~~-~~i~iwd~ 355 (432)
.+ ...+..+.++|++..++. + .. ++++.||+
T Consensus 377 ~~-------------~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 377 LE-------------VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp CC-------------SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred CC-------------CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 53 467888999999876653 2 22 89999999
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=5.7e-13 Score=120.46 Aligned_cols=244 Identities=12% Similarity=0.045 Sum_probs=154.9
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
.+...+.+++|+|+|++++++..++.|.+||.++++.. .....+.
T Consensus 42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~---------------------------~~~~~~~-------- 86 (333)
T 2dg1_A 42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK---------------------------RPFVSHK-------- 86 (333)
T ss_dssp SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---------------------------EEEECSS--------
T ss_pred ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE---------------------------EEeeCCC--------
Confidence 34556789999999998888888999999998776421 1122344
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCC----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 185 (432)
..+.++++ ++++++++++..+ +.|.+||..++....+...... ...+..+++++++...
T Consensus 87 ----~~~~~i~~--~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----------~~~~~~i~~d~~g~l~ 149 (333)
T 2dg1_A 87 ----ANPAAIKI--HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST-----------AYCIDDMVFDSKGGFY 149 (333)
T ss_dssp ----SSEEEEEE--CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSS-----------CCCEEEEEECTTSCEE
T ss_pred ----CCcceEEE--CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCcc-----------CCcccceEECCCCCEE
Confidence 67899999 8999888777666 6899999988765433221111 1457788899998766
Q ss_pred ecceee----ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecC
Q 014005 186 YHLEWT----ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMK 259 (432)
Q Consensus 186 ~~~~~~----~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~ 259 (432)
++.... ..+.+..++.. ..+..... .....+..++|+|+++.++.+ .++.|.+||++..+..+..+...
T Consensus 150 v~~~~~~~~~~~~~l~~~~~~---~~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~ 224 (333)
T 2dg1_A 150 FTDFRGYSTNPLGGVYYVSPD---FRTVTPII--QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGAT 224 (333)
T ss_dssp EEECCCBTTBCCEEEEEECTT---SCCEEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEE
T ss_pred EEeccccccCCCceEEEEeCC---CCEEEEee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccce
Confidence 654320 02344444443 22222221 223457899999999866544 68899999996323322211000
Q ss_pred -CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005 260 -PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (432)
Q Consensus 260 -~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d 338 (432)
.....++ ..+..+++++++ +++++...++.|.+||.. ++. +..+..+ ... .++...+.+++|+||
T Consensus 225 ~~~~~~~~-~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~-g~~----~~~~~~~-~~~------~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 225 IPYYFTGH-EGPDSCCIDSDD-NLYVAMYGQGRVLVFNKR-GYP----IGQILIP-GRD------EGHMLRSTHPQFIPG 290 (333)
T ss_dssp EEEECCSS-SEEEEEEEBTTC-CEEEEEETTTEEEEECTT-SCE----EEEEECT-TGG------GTCSCBCCEEEECTT
T ss_pred EEEecCCC-CCCCceEECCCC-CEEEEEcCCCEEEEECCC-CCE----EEEEEcC-CCc------cccccCcceEEECCC
Confidence 0011222 467889999999 888877788999999984 443 3444431 000 000125889999999
Q ss_pred CCEEEE
Q 014005 339 GQHLLS 344 (432)
Q Consensus 339 g~~l~s 344 (432)
|+.|+.
T Consensus 291 g~~L~v 296 (333)
T 2dg1_A 291 TNQLII 296 (333)
T ss_dssp SCEEEE
T ss_pred CCEEEE
Confidence 876654
No 174
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.61 E-value=4e-13 Score=117.53 Aligned_cols=234 Identities=9% Similarity=-0.032 Sum_probs=156.4
Q ss_pred cEEEEEEcCCCCEEE-EecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005 34 IVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 112 (432)
...+++++++|++++ +...++.|.+|+..+.... .....+.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---------------------------~~~~~~~----------- 66 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---------------------------VLPFNGL----------- 66 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---------------------------ECCCCSC-----------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---------------------------eEeeCCc-----------
Confidence 778999999999777 5567889999987654311 0001122
Q ss_pred hcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
..+.++++ +++++++++.. ++.|.+||..+......... . ...+..+++++++...++...
T Consensus 67 -~~p~~i~~--~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~--~-----------~~~p~~i~~~~~g~l~v~~~~-- 127 (270)
T 1rwi_B 67 -YQPQGLAV--DGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFD--G-----------LNYPEGLAVDTQGAVYVADRG-- 127 (270)
T ss_dssp -CSCCCEEE--CTTCCEEEEET-TTEEEEECTTCSCCEECCCC--S-----------CSSEEEEEECTTCCEEEEEGG--
T ss_pred -CCcceeEE--CCCCCEEEEcC-CCEEEEEeCCCceEeeeecC--C-----------cCCCcceEECCCCCEEEEECC--
Confidence 45678999 88888666555 88999999876653322111 0 134677888888875555444
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceE
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (432)
++.|.+|+.. ........ ......+..++++++++.+++. .++.|.+||.. ........ ......+.
T Consensus 128 ~~~i~~~~~~---~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-~~~~~~~~-------~~~~~~p~ 195 (270)
T 1rwi_B 128 NNRVVKLAAG---SKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE-SNNQVVLP-------FTDITAPW 195 (270)
T ss_dssp GTEEEEECTT---CCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT-TCCEEECC-------CSSCCSEE
T ss_pred CCEEEEEECC---CceeEeec-cccCCCceeEEEeCCCCEEEEECCCCEEEEEecC-CCceEeec-------ccCCCCce
Confidence 6778888654 22222111 2333468899999999877777 78999999988 33322211 22235688
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeec-ccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCe
Q 014005 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR-DAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN 349 (432)
Q Consensus 272 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~ 349 (432)
.++++++| .++++...++.|.+||...... .... .+ ...+.+++++++|+++++. .+++
T Consensus 196 ~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~-----~~~~~~~-------------~~~p~~i~~~~~g~l~v~~~~~~~ 256 (270)
T 1rwi_B 196 GIAVDEAG-TVYVTEHNTNQVVKLLAGSTTS-----TVLPFTG-------------LNTPLAVAVDSDRTVYVADRGNDR 256 (270)
T ss_dssp EEEECTTC-CEEEEETTTSCEEEECTTCSCC-----EECCCCS-------------CSCEEEEEECTTCCEEEEEGGGTE
T ss_pred EEEECCCC-CEEEEECCCCcEEEEcCCCCcc-----eeeccCC-------------CCCceeEEECCCCCEEEEECCCCE
Confidence 99999998 8888877888999999875432 2221 11 2568899999999977775 4499
Q ss_pred EEEEec
Q 014005 350 LKVFRY 355 (432)
Q Consensus 350 i~iwd~ 355 (432)
|+++++
T Consensus 257 v~~~~~ 262 (270)
T 1rwi_B 257 VVKLTS 262 (270)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999998
No 175
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.59 E-value=1.9e-13 Score=136.21 Aligned_cols=242 Identities=10% Similarity=0.004 Sum_probs=156.4
Q ss_pred CCCcEEEEEEcCCCCEEE-----EecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 31 DVDIVSAIEFDKTGDYLA-----VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~-----t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
|...+..++|||||++|| .|+.+.+|++||+++++.. . ..+...
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~---------------------------~--~~~~~~-- 167 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS---------------------------K--VDVIEG-- 167 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC---------------------------S--SCCBSC--
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc---------------------------C--CcccCc--
Confidence 444789999999999998 4555678999999987632 0 111100
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCe-------------EEEEEccCccee--eeeecCCCCccccccccccc
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKT-------------IKLWKVRDQKVK--KIKEMDHFPFVSSENTLLAE 170 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~-------------i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 170 (432)
.....++| +|||+.|+.++.|.. |++|++.++... .+.....+.
T Consensus 168 --------~~~~~~~w--spDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~----------- 226 (695)
T 2bkl_A 168 --------GKYATPKW--TPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP----------- 226 (695)
T ss_dssp --------CTTCCCEE--CTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT-----------
T ss_pred --------ccccceEE--ecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC-----------
Confidence 11257899 999999999988776 999999887632 332322222
Q ss_pred cccccccCCCCCcceecceeec--cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEc----CCeEEEE
Q 014005 171 KNFMNEHNPPSFAHGYHLEWTE--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSAD----DLRINLW 244 (432)
Q Consensus 171 ~~i~~~~~~~~~~~~~~~~~~~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----d~~i~lw 244 (432)
..+..+.|+|++++++...... ...+.+++.. .+.. +.+ ..+...+....+ +++.+++.+. ++.|.+|
T Consensus 227 ~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~---~~~~-~~l-~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~ 300 (695)
T 2bkl_A 227 TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG---EKDF-RLL-VKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEV 300 (695)
T ss_dssp TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT---CSSC-EEE-EECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC---CCce-EEe-ecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEE
Confidence 4567889999999998877622 2255555443 2233 333 234445555566 5565444443 5789999
Q ss_pred eCCCCCc--eeeEeecCCCCcCCC-CcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc-ccccccccceeecccccccCCc
Q 014005 245 NLEISDQ--CFNIVDMKPSNMDDL-TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSK 320 (432)
Q Consensus 245 d~~~~~~--~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~ 320 (432)
|++.... ....+ ..+ ...+..++|+ ++ .++++...|+..+||.+. +++. .+.+..+
T Consensus 301 d~~~~~~~~~~~l~-------~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~----~~~l~~~------- 360 (695)
T 2bkl_A 301 DPAKPARASWKEIV-------PEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGKP----VRTVQLP------- 360 (695)
T ss_dssp BTTBCSGGGCEEEE-------CCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCCE----EEECCCS-------
T ss_pred eCCCCCccCCeEEe-------cCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCe----eEEecCC-------
Confidence 9973321 12222 222 4567888888 55 889999999998888765 3332 2334331
Q ss_pred cceeeeecceeEEEEcCCCCEEEE-e-e--C-CeEEEEec
Q 014005 321 SFFTEIIASISDIKFANDGQHLLS-R-D--Y-MNLKVFRY 355 (432)
Q Consensus 321 ~~~~~~~~~v~~~~~s~dg~~l~s-~-~--~-~~i~iwd~ 355 (432)
....+..++++|++..|+. . + . ++|++||+
T Consensus 361 -----~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 361 -----GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp -----SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred -----CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 0356778889999987663 1 2 2 78999999
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.59 E-value=2e-14 Score=133.12 Aligned_cols=253 Identities=8% Similarity=-0.025 Sum_probs=146.2
Q ss_pred EEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc-c--ccchhhhh
Q 014005 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF-D--YLKSLEIE 113 (432)
Q Consensus 37 ~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~-~--~~~~~~~~ 113 (432)
.+.|+|+|++|+.++.++.|.+|++.+++.. .....+..-. + .+-.....
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~---------------------------~~~~~~~~~~~~g~~l~~~~~~ 137 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQ---------------------------VIYTVDEEWKGYGTWVANSDCT 137 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEE---------------------------EEEECCTTEEEEEEEEECTTSS
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcE---------------------------EEEecccccCCCCCEEEeccCC
Confidence 3789999999999999999999998876521 1111111000 0 00000000
Q ss_pred c----ceeEEEEEEcCCCCEEEEE-----eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC-CCc
Q 014005 114 E----KINRVRWCAAPNGSMFILS-----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFA 183 (432)
Q Consensus 114 ~----~v~~l~~~~s~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 183 (432)
. ....+.| +|+++.++.+ ..+..|.+||+.+++...+.... ..+..+.|+| ++.
T Consensus 138 ~~~~~~~~~~~~--spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~--------------~~~~~~~~sp~dg~ 201 (396)
T 3c5m_A 138 KLVGIEILKRDW--QPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDT--------------AWLGHPIYRPFDDS 201 (396)
T ss_dssp EEEEEEEEGGGC--CCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEES--------------SCEEEEEEETTEEE
T ss_pred cccccccccccc--CCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCC--------------cccccceECCCCCC
Confidence 0 0001345 6788776654 35678999999888765544221 4567788999 777
Q ss_pred ceecceeecc----ceEEEEeecccccceeeEEeecCC-CCCeeEEEeCCCCCEEEEE-cC-----CeEEEEeCCCCCce
Q 014005 184 HGYHLEWTEN----MATKIANVGNSVHARCQKVYPHAH-DFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQC 252 (432)
Q Consensus 184 ~~~~~~~~~~----~~v~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~-~d-----~~i~lwd~~~~~~~ 252 (432)
.++....... ..+.+|++. ........ ... ...+..++|+|+|+.|+.+ .+ +.|++||+. +++.
T Consensus 202 ~l~~~~~~~~~~~~~~l~~~d~~---~~~~~~l~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~-~g~~ 276 (396)
T 3c5m_A 202 TVGFCHEGPHDLVDARMWLVNED---GSNVRKIK-EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE-TLEN 276 (396)
T ss_dssp EEEEEECSCSSSCSCCCEEEETT---SCCCEESS-CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT-TCCE
T ss_pred EEEEEecCCCCCCCceEEEEECC---CCceeEee-ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECC-CCCe
Confidence 6655443212 467777775 22222222 211 2357889999999987765 33 449999998 4443
Q ss_pred eeEeecCCCCcCCCCcceEEEEEcC-CCCcEEEEEe----------------CCCeEEEEEccccccccccceeeccccc
Q 014005 253 FNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSS----------------SRGFVRLVDMRQSALCDHSARILRDAAE 315 (432)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~----------------~dg~i~iwd~~~~~~~~~~~~~~~~h~~ 315 (432)
..+.. ..+ .. +.|+| ++ +++++++ .++.|++||+.+++. ..+..|..
T Consensus 277 ~~l~~-----~~~----~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-----~~l~~~~~ 340 (396)
T 3c5m_A 277 EEVMV-----MPP----CS-HLMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-----QKLCKHST 340 (396)
T ss_dssp EEEEE-----CCS----EE-EEEECSSS-SEEEEEECCC----------CCCCCCEEEEEETTTTBC-----CEEEECCC
T ss_pred EEeee-----CCC----CC-CCccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEEecccCce-----EEccCCCC
Confidence 33220 111 22 89999 99 7777654 347899999987764 44444310
Q ss_pred ccCCccceeeeecceeEEEEcCCCCEEEEee-C-CeEEEEec
Q 014005 316 SHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKVFRY 355 (432)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~-~~i~iwd~ 355 (432)
.... ...+....+..++|+|||++|+..+ . +...+|.+
T Consensus 341 ~~~~--~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 341 SWDV--LDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp CCCC--BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cccc--ccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 0000 0000000256689999999888753 2 55555544
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.58 E-value=2.5e-12 Score=113.51 Aligned_cols=243 Identities=9% Similarity=0.047 Sum_probs=156.4
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccC-CCCCcceecceeec
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN-PPSFAHGYHLEWTE 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~ 192 (432)
....++++ +++++++++...++.|.+||........+....... .....+..+++ .+++...++.. ..
T Consensus 30 ~~p~~v~~--~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~--------~~~~~p~~i~~~~~~g~l~v~~~-~~ 98 (286)
T 1q7f_A 30 TEPSGVAV--NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRD--------SQLLYPNRVAVVRNSGDIIVTER-SP 98 (286)
T ss_dssp SCEEEEEE--CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSST--------TCBSSEEEEEEETTTTEEEEEEC-GG
T ss_pred CCCceEEE--CCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCc--------ccccCceEEEEEcCCCeEEEEcC-CC
Confidence 56889999 889988888888999999998744332222110000 00134566777 45665555432 12
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceE
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (432)
++.|.+|+. .++.+..+...+...+..++++++++++++. .++.|.+||.+ +..+..+.. ..+...+.
T Consensus 99 ~~~i~~~d~----~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~-----~~~~~~p~ 167 (286)
T 1q7f_A 99 THQIQIYNQ----YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGC-----SKHLEFPN 167 (286)
T ss_dssp GCEEEEECT----TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEEC-----TTTCSSEE
T ss_pred CCEEEEECC----CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC--CCEEEEeCC-----CCccCCcE
Confidence 578999984 3455555533455678999999999988877 78999999976 444444411 23445689
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CC-e
Q 014005 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM-N 349 (432)
Q Consensus 272 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~-~ 349 (432)
.++++|++ +++++...++.|++||.. ++. +..+..+. +...+..++++++|+++++.. ++ .
T Consensus 168 ~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~----~~~~~~~g-----------~~~~p~~i~~d~~G~l~v~~~~~~~~ 230 (286)
T 1q7f_A 168 GVVVNDKQ-EIFISDNRAHCVKVFNYE-GQY----LRQIGGEG-----------ITNYPIGVGINSNGEILIADNHNNFN 230 (286)
T ss_dssp EEEECSSS-EEEEEEGGGTEEEEEETT-CCE----EEEESCTT-----------TSCSEEEEEECTTCCEEEEECSSSCE
T ss_pred EEEECCCC-CEEEEECCCCEEEEEcCC-CCE----EEEEccCC-----------ccCCCcEEEECCCCCEEEEeCCCCEE
Confidence 99999998 888877889999999975 433 34443310 024678999999999888864 45 9
Q ss_pred EEEEec--CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005 350 LKVFRY--EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 350 i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~ 405 (432)
|.+||. +.+..+..+.. ...+ ..+........+++ +.++.|.+|+.
T Consensus 231 i~~~~~~g~~~~~~~~~~~--------~~~~-~~i~~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 231 LTIFTQDGQLISALESKVK--------HAQC-FDVALMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp EEEECTTSCEEEEEEESSC--------CSCE-EEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred EEEECCCCCEEEEEcccCC--------CCcc-eeEEECCCCcEEEE-CCCCeEEEEEc
Confidence 999998 45555554331 0011 11111111123444 46889999984
No 178
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.57 E-value=2.3e-12 Score=117.76 Aligned_cols=237 Identities=11% Similarity=0.052 Sum_probs=142.9
Q ss_pred CCCEEEEe------cccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcce
Q 014005 43 TGDYLAVG------DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (432)
Q Consensus 43 ~g~~l~t~------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v 116 (432)
+++++.+. ..|+.|.+||..+++.. ..+..+. .+
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~---------------------------~~i~~g~------------~p- 53 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFL---------------------------GMVPTAF------------NG- 53 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEE---------------------------EEEECCE------------EE-
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEE---------------------------EEecCCC------------CC-
Confidence 55555543 24789999998776532 4454444 44
Q ss_pred eEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 117 NRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 117 ~~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
.++| +||+++++++. .++.|.+||..+.+........... .........++++|++++++
T Consensus 54 -~i~~--spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~-------~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 54 -HVQV--SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR-------VQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp -EEEE--CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB-------CCBCCCGGGEEECTTSSEEE
T ss_pred -ceEE--CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc-------cccCCCcceEEECCCCCEEE
Confidence 7899 99999999886 3678999999877643322211000 00113567899999999999
Q ss_pred cceeeccceEEEEeecccccceeeEE-eecCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCCCCCcee----------
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKV-YPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCF---------- 253 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~---------- 253 (432)
.+....++.|.+||+. +.+.+.. + .. . ....+.+.|++ ..+++. .||.+.+|+.+..++..
T Consensus 124 v~n~~~~~~v~v~d~~---~~~~~~~~i-~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~ 197 (361)
T 2oiz_A 124 LQNASPATSIGIVDVA---KGDYVEDVT-AA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFS 197 (361)
T ss_dssp EEEESSSEEEEEEETT---TTEEEEEEG-GG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSC
T ss_pred EECCCCCCeEEEEECC---CCcEEEEEe-cC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEc
Confidence 8876446789999998 5555555 3 11 1 11113334433 222333 44444444443212111
Q ss_pred --------------------------eEeecCCCC--------cCC----C----CcceEEEEEcCCCCcEEEEEeC---
Q 014005 254 --------------------------NIVDMKPSN--------MDD----L----TEVITSAEFHPIYCNLLAYSSS--- 288 (432)
Q Consensus 254 --------------------------~~~~~~~~~--------~~~----~----~~~v~~~~~~p~~~~~l~~~~~--- 288 (432)
..++..... ... . ......++|+|++ +.++++..
T Consensus 198 ~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg-~~lyv~~~~~~ 276 (361)
T 2oiz_A 198 VKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS-GRMYVFMHPDG 276 (361)
T ss_dssp TTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTT-TEEEEEEESSC
T ss_pred CCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCC-CeEEEEEccCC
Confidence 001000000 000 0 0111127899998 55554432
Q ss_pred --------CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 289 --------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 289 --------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
.+.|.+||+.+++. +..+..+ . +.+++|+|||++|++++.+.|.+||.
T Consensus 277 ~~~~~~~~~~~v~viD~~t~~~----v~~i~~~--------------~-p~~ia~spdg~~l~v~n~~~v~v~D~ 332 (361)
T 2oiz_A 277 KEGTHKFPAAEIWVMDTKTKQR----VARIPGR--------------D-ALSMTIDQQRNLMLTLDGGNVNVYDI 332 (361)
T ss_dssp CTTCTTCCCSEEEEEETTTTEE----EEEEECT--------------T-CCEEEEETTTTEEEEECSSCEEEEEC
T ss_pred CcccccCCCceEEEEECCCCcE----EEEEecC--------------C-eeEEEECCCCCEEEEeCCCeEEEEEC
Confidence 34899999999886 6777774 4 89999999999999875599999999
No 179
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.56 E-value=1.9e-13 Score=137.26 Aligned_cols=208 Identities=10% Similarity=0.040 Sum_probs=135.3
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec-
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE- 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~- 192 (432)
....++.| +||+++++++ |+.|++||+.+++...+........ .......++|+|++++++.+....
T Consensus 17 ~~~~~~~w--~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~Spdg~~l~~~~~~~~ 84 (740)
T 4a5s_A 17 LKLYSLRW--ISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDE--------FGHSINDYSISPDGQFILLEYNYVK 84 (740)
T ss_dssp CCCCCEEE--CSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTT--------CCSCCCEEEECTTSSEEEEEEEEEE
T ss_pred ccccccEE--CCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhh--------hcccccceEECCCCCEEEEEECCee
Confidence 34568899 8999888886 8999999999988655433221110 001122367899999998877521
Q ss_pred ------cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 193 ------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 193 ------~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
.+.+.+||+. ++++.+ + ..+...+...+|||||+.||.+.++.|++||+. ++...++. ..++
T Consensus 85 ~~r~~~~~~~~~~d~~---~~~~~~-l-~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~-~~~~~~lt------~~g~ 152 (740)
T 4a5s_A 85 QWRHSYTASYDIYDLN---KRQLIT-E-ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP-NLPSYRIT------WTGK 152 (740)
T ss_dssp CSSSCEEEEEEEEETT---TTEECC-S-SCCCTTEEEEEECSSTTCEEEEETTEEEEESST-TSCCEECC------SCCB
T ss_pred eEEEccceEEEEEECC---CCcEEE-c-ccCCCcceeeEECCCCCEEEEEECCeEEEEECC-CCceEEEc------CCCC
Confidence 2577899998 455443 3 466778999999999999999888999999998 44433321 1222
Q ss_pred Ccc-----------------eEEEEEcCCCCcEEEEEeCCC------------------------------------eEE
Q 014005 267 TEV-----------------ITSAEFHPIYCNLLAYSSSRG------------------------------------FVR 293 (432)
Q Consensus 267 ~~~-----------------v~~~~~~p~~~~~l~~~~~dg------------------------------------~i~ 293 (432)
... ...+.||||| +.||.++.|. .|+
T Consensus 153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~ 231 (740)
T 4a5s_A 153 EDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFF 231 (740)
T ss_dssp TTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEE
T ss_pred ccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEE
Confidence 222 2358999999 8888876332 356
Q ss_pred EEEccc---cccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe----eC-CeEEEEec
Q 014005 294 LVDMRQ---SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR----DY-MNLKVFRY 355 (432)
Q Consensus 294 iwd~~~---~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~----~~-~~i~iwd~ 355 (432)
+||+.+ ++... ...+.. +. .+.++...+..++|||||+.++.. .. ..|++||+
T Consensus 232 v~d~~~~~~~~~~~--~~~l~~-~~------~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~ 292 (740)
T 4a5s_A 232 VVNTDSLSSVTNAT--SIQITA-PA------SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDY 292 (740)
T ss_dssp EEETTSCCSSSCCC--EEEECC-CH------HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEE
T ss_pred EEECCCCCCCCcce--EEEecC-Cc------cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEEC
Confidence 666665 42100 122211 00 000125678999999999976652 12 47999998
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.56 E-value=8.1e-13 Score=120.12 Aligned_cols=221 Identities=10% Similarity=0.143 Sum_probs=143.0
Q ss_pred CcEEEEEEcCCCCEEEEeccc---ce--EEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 33 DIVSAIEFDKTGDYLAVGDRG---GR--VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~t~~~d---g~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
..+.++.|||+|++||.++.+ +. |.+|++.+++. ..+..+.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~----------------------------~~l~~~~------ 104 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS----------------------------KKILEAK------ 104 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE----------------------------EEEEEES------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce----------------------------EEEEcCC------
Confidence 467889999999999887654 33 66777766542 1233333
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCC---------------------------CeEEEEEccCcce-eeeeecCCCC
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTND---------------------------KTIKLWKVRDQKV-KKIKEMDHFP 159 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d---------------------------~~i~iwd~~~~~~-~~~~~~~~~~ 159 (432)
. +..++| +|||+.|+.++.+ ..|.+||+.+++. ..+..
T Consensus 105 ------~-~~~~~w--spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~----- 170 (347)
T 2gop_A 105 ------N-IRSLEW--NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK----- 170 (347)
T ss_dssp ------E-EEEEEE--CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-----
T ss_pred ------C-ccceeE--CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-----
Confidence 5 889999 8999998888642 5788999988775 33321
Q ss_pred ccccccccccccccccccCCCCCcceecceeecc----c-eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEE
Q 014005 160 FVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN----M-ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV 234 (432)
Q Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~-~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 234 (432)
. .+..+.|+|++ .++.+....+ . ...+|.+. .++..... . + ..+..+ +|+|+.++
T Consensus 171 ----------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d---~~~~~~l~-~-~-~~~~~~--spdg~~l~ 230 (347)
T 2gop_A 171 ----------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE---DGKEEKMF-E-K-VSFYAV--DSDGERIL 230 (347)
T ss_dssp ----------E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE---TTEEEEEE-E-E-ESEEEE--EECSSCEE
T ss_pred ----------C-CcccccCCCCe-EEEEEecccccccccccccEEEeC---CCceEEec-c-C-cceeeE--CCCCCEEE
Confidence 1 46678899999 6665543211 2 44566555 23333333 2 2 445444 89999887
Q ss_pred EE-cC--------CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE-EEEcCCCCcEEEEEeCCCeEEEEEcccccccc
Q 014005 235 SA-DD--------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS-AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD 304 (432)
Q Consensus 235 ~~-~d--------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~ 304 (432)
.+ .+ ..|.+|| . ++..... ..+...+.. +.|+ ++ ++++++.++.++|| +.+++.
T Consensus 231 ~~~~~~~~~~~~~~~l~~~d-~--~~~~~l~-------~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~~-- 294 (347)
T 2gop_A 231 LYGKPEKKYMSEHNKLYIYD-G--KEVMGIL-------DEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGEI-- 294 (347)
T ss_dssp EEECCSSSCCCSSCEEEEEC-S--SCEEESS-------TTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSSE--
T ss_pred EEEccccCCccccceEEEEC-C--CceEecc-------ccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCce--
Confidence 65 33 3677777 3 4433322 455667886 8999 75 88888999999999 885543
Q ss_pred ccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeE-EEEec
Q 014005 305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNL-KVFRY 355 (432)
Q Consensus 305 ~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i-~iwd~ 355 (432)
..+..+ ...|.+++|+| .+++++ +++.. .+|.+
T Consensus 295 ---~~~~~~-------------~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 295 ---KPIAKG-------------RHWIMGFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp ---EEEECS-------------SSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred ---EEEecC-------------CCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence 233222 46789999999 566654 44433 56655
No 181
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.55 E-value=1.7e-12 Score=118.59 Aligned_cols=237 Identities=12% Similarity=0.090 Sum_probs=140.0
Q ss_pred EEEEcCCCCEEEEec----------ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 37 ~~~fsp~g~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
.++|+|+|++|+++. .++.|.+||..+.+.. .++......+
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~---------------------------~~i~~~~~~~-- 104 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE---------------------------KEISLPPKRV-- 104 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE---------------------------EEEEECTTBC--
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE---------------------------EEEEcCcccc--
Confidence 899999999998875 3678999998776532 2332111000
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeC--CCeEEEEEccCcceeee-eecCCC------Ccc-ccccccccccccccc
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHF------PFV-SSENTLLAEKNFMNE 176 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~------~~~-~~~~~~~~~~~i~~~ 176 (432)
........+++ +|||++|+++.. ++.|.+||+.+++.... ...... +.- .........+.+..+
T Consensus 105 ----~~g~~p~~i~~--spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v 178 (361)
T 2oiz_A 105 ----QGLNYDGLFRQ--TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTI 178 (361)
T ss_dssp ----CBCCCGGGEEE--CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEE
T ss_pred ----ccCCCcceEEE--CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEE
Confidence 00034566888 899999988864 57899999988764332 111100 000 000000001111111
Q ss_pred ---------------------------cCCCCCcceecceeeccceEEEEeecccccceeeEEeec-C----C----CCC
Q 014005 177 ---------------------------HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPH-A----H----DFN 220 (432)
Q Consensus 177 ---------------------------~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~-~----~----~~~ 220 (432)
.+++++..++.... ++.+.++|+... .......+.. . + ...
T Consensus 179 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~v~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~p~g 255 (361)
T 2oiz_A 179 NLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSY--YGNVYSADFSGD-EVKVDGPWSLLNDEDKAKNWVPGG 255 (361)
T ss_dssp EECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBT--TSEEEEEECSSS-SCEEEEEEESCCHHHHHTTCEECC
T ss_pred EECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeC--CCeEEEEEecCC-CceecccccccCccccccccccCC
Confidence 11122222222222 567888887532 1111121100 0 0 112
Q ss_pred eeEEEeCCCCCEEEEE-c-----------CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeC
Q 014005 221 INSISNNSDCETFVSA-D-----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 288 (432)
Q Consensus 221 i~~~~~~~~~~~l~~~-~-----------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 288 (432)
...++++|+++.+.++ . ++.|.+||+. +.+.+..+ ..+. +.+++|+|++ ++|++++.
T Consensus 256 ~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~-t~~~v~~i-------~~~~--p~~ia~spdg-~~l~v~n~ 324 (361)
T 2oiz_A 256 YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK-TKQRVARI-------PGRD--ALSMTIDQQR-NLMLTLDG 324 (361)
T ss_dssp SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT-TTEEEEEE-------ECTT--CCEEEEETTT-TEEEEECS
T ss_pred eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC-CCcEEEEE-------ecCC--eeEEEECCCC-CEEEEeCC
Confidence 2237899998887766 4 3479999999 67777765 4444 8999999999 88888776
Q ss_pred CCeEEEEEcccc--ccccccceeecccccccCCccceeeeecceeEEEEcCCCC
Q 014005 289 RGFVRLVDMRQS--ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (432)
Q Consensus 289 dg~i~iwd~~~~--~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~ 340 (432)
+.|.+||+.++ +. +..+..+ ......++++|+|+
T Consensus 325 -~~v~v~D~~t~~l~~----~~~i~~~-------------G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 -GNVNVYDISQPEPKL----LRTIEGA-------------AEASLQVQFHPVGG 360 (361)
T ss_dssp -SCEEEEECSSSSCEE----EEEETTS-------------CSSEEEEEECCCSC
T ss_pred -CeEEEEECCCCccee----eEEeccC-------------CCCcEEEEecCCCC
Confidence 99999999998 65 4555432 45678899999986
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.52 E-value=1.5e-11 Score=110.84 Aligned_cols=248 Identities=6% Similarity=0.007 Sum_probs=159.5
Q ss_pred CcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 112 (432)
+....+.++ .++++++...++.|.+||..+++.. .++.. .
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~---------------------------~~i~~-~----------- 83 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEV---------------------------GRITG-F----------- 83 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEE---------------------------EEEEC-C-----------
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEE---------------------------EEcCC-C-----------
Confidence 346777775 3555566667889999999887643 34432 2
Q ss_pred hcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
.....+++ +++++.+++...++.|.+||..+++........... ........+++ ++..++.+....
T Consensus 84 -~~p~~i~~--~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~--------~~~~~p~~i~~--~~~~lyv~~~~~ 150 (328)
T 3dsm_A 84 -TSPRYIHF--LSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD--------MESGSTEQMVQ--YGKYVYVNCWSY 150 (328)
T ss_dssp -SSEEEEEE--EETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC--------TTTCBCCCEEE--ETTEEEEEECTT
T ss_pred -CCCcEEEE--eCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc--------ccCCCcceEEE--ECCEEEEEcCCC
Confidence 45778888 678854444448899999999988755433322100 00013344555 334444443212
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC----------CeEEEEeCCCCCceeeEeecCCC
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----------LRINLWNLEISDQCFNIVDMKPS 261 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d----------~~i~lwd~~~~~~~~~~~~~~~~ 261 (432)
++.|.++|.. +.+....+.. ......++++|+|++++++ .+ +.|.++|.+ +++....+.+
T Consensus 151 ~~~v~viD~~---t~~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~-t~~v~~~~~~--- 221 (328)
T 3dsm_A 151 QNRILKIDTE---TDKVVDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE-TFTVEKQFKF--- 221 (328)
T ss_dssp CCEEEEEETT---TTEEEEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT-TTEEEEEEEC---
T ss_pred CCEEEEEECC---CCeEEEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC-CCeEEEEEec---
Confidence 6789999998 5566666522 3456789999999877776 54 789999998 5665555421
Q ss_pred CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC-CCC
Q 014005 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQ 340 (432)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-dg~ 340 (432)
......+.++|+|++ +.|.++.. .|.+||..+++... ...+..+ ......++++| +++
T Consensus 222 ---~~g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~--~~~~~~~-------------~~~p~gi~vdp~~g~ 280 (328)
T 3dsm_A 222 ---KLGDWPSEVQLNGTR-DTLYWINN--DIWRMPVEADRVPV--RPFLEFR-------------DTKYYGLTVNPNNGE 280 (328)
T ss_dssp ---CTTCCCEEEEECTTS-CEEEEESS--SEEEEETTCSSCCS--SCSBCCC-------------SSCEEEEEECTTTCC
T ss_pred ---CCCCCceeEEEecCC-CEEEEEcc--EEEEEECCCCceee--eeeecCC-------------CCceEEEEEcCCCCe
Confidence 112357899999998 77776654 89999998876421 1111110 24678899999 455
Q ss_pred EEEEe----eC-CeEEEEec--CcceeEee
Q 014005 341 HLLSR----DY-MNLKVFRY--EPVMTLSF 363 (432)
Q Consensus 341 ~l~s~----~~-~~i~iwd~--~~~~~~~~ 363 (432)
+.++. .. +.|.+||. +.+.++..
T Consensus 281 lyva~~~~y~~~~~V~v~d~~g~~~~~i~~ 310 (328)
T 3dsm_A 281 VYVADAIDYQQQGIVYRYSPQGKLIDEFYV 310 (328)
T ss_dssp EEEEECTTSSSEEEEEEECTTCCEEEEEEE
T ss_pred EEEEcccccccCCEEEEECCCCCEEEEEEe
Confidence 55554 34 99999999 55666654
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.52 E-value=2.5e-12 Score=116.87 Aligned_cols=222 Identities=10% Similarity=0.060 Sum_probs=146.2
Q ss_pred ccCCCcEEEEEEcCCCCEEEEec---------ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeec
Q 014005 29 LQDVDIVSAIEFDKTGDYLAVGD---------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS 99 (432)
Q Consensus 29 ~~h~~~V~~~~fsp~g~~l~t~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 99 (432)
+.....+..+++ +|++++... .++.|.+|++++++. ..+
T Consensus 11 l~~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~----------------------------~~l-- 58 (347)
T 2gop_A 11 FAKFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR----------------------------RFI-- 58 (347)
T ss_dssp CCCSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE----------------------------EEE--
T ss_pred ceeeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce----------------------------EEc--
Confidence 344557888888 899887642 256788999877642 112
Q ss_pred CCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCC---C--eEEEEEccCcceeeeeecCCCCccccccccccccccc
Q 014005 100 HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND---K--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (432)
Q Consensus 100 h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d---~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 174 (432)
..+..++| +|||++|+.++.+ + .|.+|++.+++...+.... . +.
T Consensus 59 --------------~~~~~~~~--SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~--------------~-~~ 107 (347)
T 2gop_A 59 --------------ENATMPRI--SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK--------------N-IR 107 (347)
T ss_dssp --------------ESCEEEEE--CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES--------------E-EE
T ss_pred --------------ccCCCeEE--CCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC--------------C-cc
Confidence 23677899 9999999887653 3 4777888877755543321 3 77
Q ss_pred cccCCCCCcceecceee-------------------------ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC
Q 014005 175 NEHNPPSFAHGYHLEWT-------------------------ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD 229 (432)
Q Consensus 175 ~~~~~~~~~~~~~~~~~-------------------------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 229 (432)
.+.|+|++..++..... ....+.+||+. .++.++.+ .. . .+..++|+|+
T Consensus 108 ~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~---~~~~~~~l-~~-~-~~~~~~~spd 181 (347)
T 2gop_A 108 SLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE---SEEVIEEF-EK-P-RFSSGIWHRD 181 (347)
T ss_dssp EEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT---TTEEEEEE-EE-E-TTCEEEEETT
T ss_pred ceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC---CCeEEeee-cC-C-CcccccCCCC
Confidence 88999999988776531 02568888887 44553444 22 3 7889999999
Q ss_pred CCEEEEE-cC------C-eEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC--------CeEE
Q 014005 230 CETFVSA-DD------L-RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------GFVR 293 (432)
Q Consensus 230 ~~~l~~~-~d------~-~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------g~i~ 293 (432)
| +++++ .+ . ...+|.++ ++....+. .+ ..+..+ +|+| +.|+.++.+ ..|.
T Consensus 182 g-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~--------~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~ 247 (347)
T 2gop_A 182 K-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMF--------EK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLY 247 (347)
T ss_dssp E-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEE--------EE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEE
T ss_pred e-EEEEEecccccccccccccEEEeC-CCceEEec--------cC-cceeeE--CCCC-CEEEEEEccccCCccccceEE
Confidence 9 77766 43 2 44566555 44433322 22 445444 9999 777776644 3688
Q ss_pred EEEccccccccccceeecccccccCCccceeeeecceeE-EEEcCCCCEEEEe-eCCeEEEEec
Q 014005 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD-IKFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 294 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~-~~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
+|| +++. ......| ...+.. +.|+ || +++++ .++.++|| +
T Consensus 248 ~~d--~~~~----~~l~~~~-------------~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~ 289 (347)
T 2gop_A 248 IYD--GKEV----MGILDEV-------------DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-I 289 (347)
T ss_dssp EEC--SSCE----EESSTTC-------------CSEEEEEEEET-TE-EEEEEEETTEEEEE-E
T ss_pred EEC--CCce----EeccccC-------------CcccCCccEEc-Cc-EEEEEecCCcEEEE-E
Confidence 888 4443 2333343 456776 8999 88 77776 44999999 8
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.51 E-value=1.6e-12 Score=117.46 Aligned_cols=249 Identities=8% Similarity=0.015 Sum_probs=162.3
Q ss_pred CcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 112 (432)
..|.++.|++++..++..+.++.++.|.- + ....+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------------------------~~~~~~~~~----------- 44 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITA---E---------------------------PWLEISKKG----------- 44 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---E---------------------------EEEEEESSC-----------
T ss_pred cccceeeecCCccceeEEeecccCccccc---c---------------------------eeEEEeccC-----------
Confidence 35778899999888877778888999821 1 113455555
Q ss_pred hcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
..+.+++| ++++++++++..++.|.+||..+++...+... .. ..+..+++++++..++....
T Consensus 45 -~~~~~~~~--~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~-----------~~~~~i~~~~dg~l~v~~~~-- 106 (333)
T 2dg1_A 45 -LQLEGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPFVS--HK-----------ANPAAIKIHKDGRLFVCYLG-- 106 (333)
T ss_dssp -CCEEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEEEC--SS-----------SSEEEEEECTTSCEEEEECT--
T ss_pred -ccccCcEE--CCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC--CC-----------CCcceEEECCCCcEEEEeCC--
Confidence 66789999 89999888888899999999988775544321 11 56788999999886665443
Q ss_pred c----ceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE-c------CCeEEEEeCCCCCceeeEeecCC
Q 014005 193 N----MATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-D------DLRINLWNLEISDQCFNIVDMKP 260 (432)
Q Consensus 193 ~----~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~------d~~i~lwd~~~~~~~~~~~~~~~ 260 (432)
+ +.|.+||... ......+. ..+...+++++++|+|+++++. . .+.|..+|.+ +++. ..+
T Consensus 107 ~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~-~~~~-~~~---- 177 (333)
T 2dg1_A 107 DFKSTGGIFAATENG---DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTV-TPI---- 177 (333)
T ss_dssp TSSSCCEEEEECTTS---CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCE-EEE----
T ss_pred CCCCCceEEEEeCCC---CEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC-CCEE-EEe----
Confidence 3 5788898773 33322221 1244578999999999887776 3 2456666655 2232 222
Q ss_pred CCcCCCCcceEEEEEcCCCCcEE-EEEeCCCeEEEEEccc-cccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005 261 SNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (432)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d 338 (432)
......+..++|+|++ +.| ++.+.++.|.+||+.+ +.. ...+...... .+.. ...+..++++++
T Consensus 178 ---~~~~~~~~~i~~~~dg-~~l~v~~~~~~~i~~~d~~~~g~~----~~~~~~~~~~-----~~~~-~~~~~~i~~d~~ 243 (333)
T 2dg1_A 178 ---IQNISVANGIALSTDE-KVLWVTETTANRLHRIALEDDGVT----IQPFGATIPY-----YFTG-HEGPDSCCIDSD 243 (333)
T ss_dssp ---EEEESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTTSSS----EEEEEEEEEE-----ECCS-SSEEEEEEEBTT
T ss_pred ---ecCCCcccceEECCCC-CEEEEEeCCCCeEEEEEecCCCcC----cccccceEEE-----ecCC-CCCCCceEECCC
Confidence 1222347899999998 655 4555688999999864 332 1211100000 0000 135678999999
Q ss_pred CCEEEEee-CCeEEEEec--CcceeEee
Q 014005 339 GQHLLSRD-YMNLKVFRY--EPVMTLSF 363 (432)
Q Consensus 339 g~~l~s~~-~~~i~iwd~--~~~~~~~~ 363 (432)
|+++++.. ++.|.+||. +.+..+..
T Consensus 244 G~l~v~~~~~~~v~~~d~~g~~~~~~~~ 271 (333)
T 2dg1_A 244 DNLYVAMYGQGRVLVFNKRGYPIGQILI 271 (333)
T ss_dssp CCEEEEEETTTEEEEECTTSCEEEEEEC
T ss_pred CCEEEEEcCCCEEEEECCCCCEEEEEEc
Confidence 99877764 489999998 44444443
No 185
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=1.8e-11 Score=109.44 Aligned_cols=241 Identities=11% Similarity=0.060 Sum_probs=155.6
Q ss_pred cEEEEEEcCCCCEEEE-------ecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeee-----cCC
Q 014005 34 IVSAIEFDKTGDYLAV-------GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-----SHE 101 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t-------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-----~h~ 101 (432)
...+++|+++|.++++ +..++.|.+||..+++.. .+. ++.
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~----------------------------~~~~~~~~~~~ 70 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT----------------------------VICKPEVNGYG 70 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE----------------------------EEECCEETTEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE----------------------------EEEecccCCCC
Confidence 5678999999998887 677889999997765421 111 133
Q ss_pred ccccccchhhhhcceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcceeee-eecCCCCccccccccccccccccccCC
Q 014005 102 PEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNP 179 (432)
Q Consensus 102 ~~~~~~~~~~~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~ 179 (432)
..+.++.+ +++ ++++++. ..+.|.+||.. ++...+ ...... .....+..++++
T Consensus 71 ------------~~~~~i~~--~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~---------~~~~~~~~i~~d 125 (314)
T 1pjx_A 71 ------------GIPAGCQC--DRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEG---------RRMQGCNDCAFD 125 (314)
T ss_dssp ------------CCEEEEEE--CSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTS---------CBCBCCCEEEEC
T ss_pred ------------CCCceEEE--ecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCC---------ccccCCcCEEEC
Confidence 56889999 888 6545444 44579999988 664433 211100 011357788889
Q ss_pred CCCcceecceeec-------------cceEEEEeecccccceeeEEeecCCCCCeeEEEeC----CCCCEEEEE--cCCe
Q 014005 180 PSFAHGYHLEWTE-------------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNN----SDCETFVSA--DDLR 240 (432)
Q Consensus 180 ~~~~~~~~~~~~~-------------~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~--~d~~ 240 (432)
+++...++..... .+.+..++.. ++..... .+......++++ |+++.+..+ .++.
T Consensus 126 ~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----g~~~~~~--~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~ 199 (314)
T 1pjx_A 126 YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD----GQMIQVD--TAFQFPNGIAVRHMNDGRPYQLIVAETPTKK 199 (314)
T ss_dssp TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT----SCEEEEE--EEESSEEEEEEEECTTSCEEEEEEEETTTTE
T ss_pred CCCCEEEEecCcccccccccccccCCCCeEEEECCC----CCEEEec--cCCCCcceEEEecccCCCCCEEEEEECCCCe
Confidence 9887665543310 1345555543 2222222 233456889999 999765544 6889
Q ss_pred EEEEeCCCCCce--eeEeecCCCCcCCCC-cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccccc
Q 014005 241 INLWNLEISDQC--FNIVDMKPSNMDDLT-EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH 317 (432)
Q Consensus 241 i~lwd~~~~~~~--~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~ 317 (432)
|.+||.+..+.. ...+ ..+..+. ..+..++++++| +++++...++.|.+||..+++. ...+..+
T Consensus 200 i~~~~~~~~g~~~~~~~~----~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~----~~~~~~~---- 266 (314)
T 1pjx_A 200 LWSYDIKGPAKIENKKVW----GHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQP----KMRIRCP---- 266 (314)
T ss_dssp EEEEEEEETTEEEEEEEE----EECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSC----SEEEECS----
T ss_pred EEEEECCCCCccccceEE----EECCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcE----eEEEeCC----
Confidence 999998622321 1111 0113333 567889999999 8888877889999999886664 3455442
Q ss_pred CCccceeeeecceeEEEEcCCCCEEEEe-eC-CeEEEEec
Q 014005 318 GSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKVFRY 355 (432)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~-~~i~iwd~ 355 (432)
...+.+++|+|+|++|..+ .. +.|..|++
T Consensus 267 ---------~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 267 ---------FEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp ---------SSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred ---------CCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 3678999999999955554 33 79999998
No 186
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.49 E-value=5.2e-12 Score=126.82 Aligned_cols=241 Identities=12% Similarity=0.024 Sum_probs=155.0
Q ss_pred CcEEEEEEcCCCCEEEEeccc-----ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 33 DIVSAIEFDKTGDYLAVGDRG-----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
..+..++|||||++||.++.+ .+|++||+++++.. ....+.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~----------------------------~~~~~~------ 208 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL----------------------------ADELKW------ 208 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE----------------------------EEEEEE------
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC----------------------------CccCCC------
Confidence 368899999999999887654 46999999987632 111111
Q ss_pred chhhhhcceeEEEEEEcCCCCEEEEEeCCCe--------------EEEEEccCccee--eeeecCCCCcccccccccccc
Q 014005 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKT--------------IKLWKVRDQKVK--KIKEMDHFPFVSSENTLLAEK 171 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~--------------i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 171 (432)
..+..++| +|| +.|+.++.++. |.+|++.++... .+.....++ .
T Consensus 209 ------~~~~~~~w--spD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~-----------~ 268 (741)
T 1yr2_A 209 ------VKFSGLAW--LGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELP-----------K 268 (741)
T ss_dssp ------EESCCCEE--STT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCT-----------T
T ss_pred ------ceeccEEE--ECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCC-----------e
Confidence 23457899 899 88888876554 889998776532 222222111 2
Q ss_pred ccccccCCCCCcceecceeec---cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c----CCeEEE
Q 014005 172 NFMNEHNPPSFAHGYHLEWTE---NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D----DLRINL 243 (432)
Q Consensus 172 ~i~~~~~~~~~~~~~~~~~~~---~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~----d~~i~l 243 (432)
.+..+.|+|++++++...... ...+.+||+... ...+.+.+ ..+........ +|+|+.|+.. . ++.|.+
T Consensus 269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~-~~~~~~~l-~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~ 345 (741)
T 1yr2_A 269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG-KIGPVTAL-IPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVR 345 (741)
T ss_dssp CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT-EECCCEEE-ECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEE
T ss_pred EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC-CCcccEEe-cCCCCceEEEE-eccCCEEEEEECCCCCCCEEEE
Confidence 467889999999888776522 348899998732 11213334 23344444443 4888887765 4 356999
Q ss_pred EeCCCC-CceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc-ccccccccceeecccccccCCcc
Q 014005 244 WNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKS 321 (432)
Q Consensus 244 wd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~ 321 (432)
||++.. ......+ ..+...+..+.++ ++ .++++...|+..+||.+. +++. .+.+..+
T Consensus 346 ~d~~~~~~~~~~l~-------~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~----~~~l~~~-------- 404 (741)
T 1yr2_A 346 VDLSGSTPRFDTVV-------PESKDNLESVGIA-GN-RLFASYIHDAKSQVLAFDLDGKP----AGAVSLP-------- 404 (741)
T ss_dssp EECSSSSCEEEEEE-------CCCSSEEEEEEEE-BT-EEEEEEEETTEEEEEEEETTSCE----EEECBCS--------
T ss_pred EeCCCCccccEEEe-------cCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCc----eeeccCC--------
Confidence 998832 2233332 3444557778887 44 788888999988877655 3332 2444321
Q ss_pred ceeeeecceeEEEEcCCCCEEEE---e-eC-CeEEEEec
Q 014005 322 FFTEIIASISDIKFANDGQHLLS---R-DY-MNLKVFRY 355 (432)
Q Consensus 322 ~~~~~~~~v~~~~~s~dg~~l~s---~-~~-~~i~iwd~ 355 (432)
....+..+.++|+++.|+. + .. ++|++||+
T Consensus 405 ----~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 405 ----GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp ----SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred ----CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 0356888999999876652 2 22 89999998
No 187
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.47 E-value=1.3e-11 Score=111.28 Aligned_cols=248 Identities=10% Similarity=0.023 Sum_probs=156.0
Q ss_pred cceeEEEEEEcCCCCEEEEEeCC------------------------CeEEEEEccCcceeeeeecCCCCcccccccccc
Q 014005 114 EKINRVRWCAAPNGSMFILSTND------------------------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (432)
..+.++++ +++|+++++...+ +.|.+||..++++...... ..-
T Consensus 24 ~~v~~va~--d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~---------- 90 (329)
T 3fvz_A 24 GQVSGVAL--DSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK-NLF---------- 90 (329)
T ss_dssp SCEEEEEE--CTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT-TTC----------
T ss_pred CCceEEEE--CCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC-Ccc----------
Confidence 67899999 8999988888776 4799999987775433221 111
Q ss_pred ccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEee--------cCCCCCeeEEEeCC-CCCEEEEE--cC
Q 014005 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYP--------HAHDFNINSISNNS-DCETFVSA--DD 238 (432)
Q Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~-~~~~l~~~--~d 238 (432)
.....+++++++...++... ++.|++|+.... ...+..+. ..+......++++| ++.++++. .+
T Consensus 91 -~~p~gia~d~~g~l~v~d~~--~~~v~~~~~~g~--~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~ 165 (329)
T 3fvz_A 91 -YLPHGLSIDTDGNYWVTDVA--LHQVFKLDPHSK--EGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN 165 (329)
T ss_dssp -SSEEEEEECTTSCEEEEETT--TTEEEEECTTCS--SCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSC
T ss_pred -CCceEEEECCCCCEEEEECC--CCEEEEEeCCCC--eEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCC
Confidence 34667889999987766555 789999997632 11333331 23344788999999 78877776 38
Q ss_pred CeEEEEeCCCCCceeeEeecCCCC---cCCCCcceEEEEEcCC-CCcEEEEEeCCCeEEEEEccccccccccceeecccc
Q 014005 239 LRINLWNLEISDQCFNIVDMKPSN---MDDLTEVITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA 314 (432)
Q Consensus 239 ~~i~lwd~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~ 314 (432)
+.|++||.+ +..+..+...... ..++-.....++++|+ + +++++...++.|++||..+++. +..+...
T Consensus 166 ~~I~~~~~~--g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g-~l~v~d~~~~~I~~~~~~~G~~----~~~~~~~- 237 (329)
T 3fvz_A 166 SRIVQFSPS--GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD-QLCVADRENGRIQCFKTDTKEF----VREIKHA- 237 (329)
T ss_dssp CEEEEECTT--SCEEEEECEECCSSSCCTTEESCEEEEEEETTTT-EEEEEETTTTEEEEEETTTCCE----EEEECCT-
T ss_pred CeEEEEcCC--CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC-EEEEEECCCCEEEEEECCCCcE----EEEEecc-
Confidence 999999955 5555554110000 0123345899999999 6 8888888899999999987775 4555331
Q ss_pred cccCCccceeeeecceeEEEEcC------CCCEEEEeeC-CeEEEEec---CcceeEeecceeeeehhhhhccccccccc
Q 014005 315 ESHGSKSFFTEIIASISDIKFAN------DGQHLLSRDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYA 384 (432)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~s~------dg~~l~s~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (432)
.+...+..++|+| +|+..++... ..|++||+ +.+..+..... .+ ..+. .+..
T Consensus 238 ----------~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~------~~-~~p~-~ia~ 299 (329)
T 3fvz_A 238 ----------SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRK------HF-DMPH-DIVA 299 (329)
T ss_dssp ----------TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSS------CC-SSEE-EEEE
T ss_pred ----------ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCC------cc-CCee-EEEE
Confidence 0134677888998 3332222222 58999998 44444421110 00 1111 1111
Q ss_pred ceeeEEEEeecccceeeeecc
Q 014005 385 LSCVIYIITTLYLINLSALSA 405 (432)
Q Consensus 385 ~~~~~~~~~g~~~~~i~~~~~ 405 (432)
.......++...++.|.+|+.
T Consensus 300 ~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 300 SEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp CTTSEEEEEESSSCCEEEEEE
T ss_pred CCCCCEEEEECCCCEEEEEeC
Confidence 112234666777888888883
No 188
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.47 E-value=4.1e-10 Score=99.64 Aligned_cols=238 Identities=7% Similarity=-0.037 Sum_probs=161.4
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
...+.++.++++|+++++...++.|.+||.. ++.. . .....+.
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-------------------------~-~~~~~~~---------- 56 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-------------------------E-YPLPTPD---------- 56 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-------------------------E-EECSSTT----------
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-------------------------E-ecCCccc----------
Confidence 4579999999999988777667899999977 4311 0 0111222
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
..+.++++ ++++.++++...++.|..||.. ++..... .... ...+..+++++++...+....
T Consensus 57 --~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~~~~-----------~~~~~~i~~~~~g~l~v~~~~- 118 (299)
T 2z2n_A 57 --AKVMCLTI--SSDGEVWFTENAANKIGRITKK-GIIKEYT-LPNP-----------DSAPYGITEGPNGDIWFTEMN- 118 (299)
T ss_dssp --CCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEE-CSST-----------TCCEEEEEECTTSCEEEEETT-
T ss_pred --CceeeEEE--CCCCCEEEeCCCCCeEEEECCC-CcEEEEe-CCCc-----------CCCceeeEECCCCCEEEEecC-
Confidence 56888999 8899888777778899999986 3332221 1111 145677888888876665444
Q ss_pred ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (432)
++.+..+|... +............+..+++.++++..++. .++.|..||.. +...... .......+
T Consensus 119 -~~~i~~~d~~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~------~~~~~~~~ 185 (299)
T 2z2n_A 119 -GNRIGRITDDG----KIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITES--GDITEFK------IPTPASGP 185 (299)
T ss_dssp -TTEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--CCEEEEE------CSSTTCCE
T ss_pred -CceEEEECCCC----CEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCC--CcEEEee------CCCCCCcc
Confidence 66788888731 11121113345678999999999888877 78899999984 3333221 12334568
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCe
Q 014005 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN 349 (432)
Q Consensus 271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~ 349 (432)
..+++++++ ++.++...++.|.+||. +++. ..+.. + .....+.+++++++|++.++. ..+.
T Consensus 186 ~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~-----~~~~~-~----------~~~~~~~~i~~~~~g~l~v~~~~~~~ 247 (299)
T 2z2n_A 186 VGITKGNDD-ALWFVEIIGNKIGRITT-SGEI-----TEFKI-P----------TPNARPHAITAGAGIDLWFTEWGANK 247 (299)
T ss_dssp EEEEECTTS-SEEEEETTTTEEEEECT-TCCE-----EEEEC-S----------STTCCEEEEEECSTTCEEEEETTTTE
T ss_pred eeEEECCCC-CEEEEccCCceEEEECC-CCcE-----EEEEC-C----------CCCCCceeEEECCCCCEEEeccCCce
Confidence 899999998 87777667889999998 6653 22211 0 003568899999999977765 4489
Q ss_pred EEEEec
Q 014005 350 LKVFRY 355 (432)
Q Consensus 350 i~iwd~ 355 (432)
|..||.
T Consensus 248 i~~~d~ 253 (299)
T 2z2n_A 248 IGRLTS 253 (299)
T ss_dssp EEEEET
T ss_pred EEEECC
Confidence 999998
No 189
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.43 E-value=1.1e-10 Score=103.54 Aligned_cols=231 Identities=9% Similarity=0.052 Sum_probs=149.9
Q ss_pred cEEEEEEcCCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005 34 IVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (432)
Q Consensus 34 ~V~~~~fsp~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 112 (432)
---+..|+|++ .++++...++.|..||.++++. ..+ ...
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~----------------------------~~~-~~~----------- 53 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV----------------------------QRV-TMD----------- 53 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE----------------------------EEE-ECS-----------
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE----------------------------EEE-eCC-----------
Confidence 34578899954 5566666788999999887542 111 122
Q ss_pred hcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
..+.++++ +++++++++ . ++.|.+||..+++...+....... ....+.++++++++.+.+......
T Consensus 54 -~~~~~i~~--~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~---------~~~~~~di~~d~dG~l~~~~~~~~ 119 (297)
T 3g4e_A 54 -APVSSVAL--RQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDK---------KNNRFNDGKVDPAGRYFAGTMAEE 119 (297)
T ss_dssp -SCEEEEEE--BTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTC---------SSEEEEEEEECTTSCEEEEEEECC
T ss_pred -CceEEEEE--CCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCC---------CCCCCCCEEECCCCCEEEecCCcc
Confidence 67889999 899985544 4 567999999888765554332111 114567788999988555432210
Q ss_pred -------cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCC-CCCcee--eEeecCC
Q 014005 193 -------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLE-ISDQCF--NIVDMKP 260 (432)
Q Consensus 193 -------~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~-~~~~~~--~~~~~~~ 260 (432)
...-.+|.+... ++.... .......+.++|+|+++.+..+ .++.|..||++ ..+... +.+
T Consensus 120 ~~~~~~~~~~~~l~~~d~~--g~~~~~--~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~---- 191 (297)
T 3g4e_A 120 TAPAVLERHQGALYSLFPD--HHVKKY--FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV---- 191 (297)
T ss_dssp SBTTBCCTTCEEEEEECTT--SCEEEE--EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE----
T ss_pred cccccccCCCcEEEEEECC--CCEEEE--eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE----
Confidence 123455555422 122222 2233457899999999977655 68899999974 133221 111
Q ss_pred CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc-CCC
Q 014005 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-NDG 339 (432)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s-~dg 339 (432)
..+..+...+..++++++| ++.++...++.|..||..+++. +..+..+ ...+++++|. ||+
T Consensus 192 ~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~----~~~i~~p-------------~~~~t~~~f~g~d~ 253 (297)
T 3g4e_A 192 YKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKR----LQTVKLP-------------VDKTTSCCFGGKNY 253 (297)
T ss_dssp EECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCE----EEEEECS-------------SSBEEEEEEESGGG
T ss_pred EECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceE----EEEEECC-------------CCCceEEEEeCCCC
Confidence 0112334567899999999 8888888888999999987775 4566552 3578999998 887
Q ss_pred CEEEE
Q 014005 340 QHLLS 344 (432)
Q Consensus 340 ~~l~s 344 (432)
+.|..
T Consensus 254 ~~L~v 258 (297)
T 3g4e_A 254 SEMYV 258 (297)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 76544
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.42 E-value=3.6e-11 Score=105.25 Aligned_cols=195 Identities=12% Similarity=0.099 Sum_probs=138.7
Q ss_pred CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEE
Q 014005 43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122 (432)
Q Consensus 43 ~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~ 122 (432)
.+++|++++.++.|.+||.++++.+ .++..+. ...+.++.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~---------------------------w~~~~~~-----------~~~~~~~~~- 44 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIV---------------------------WEYPLEK-----------GWECNSVAA- 44 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEE---------------------------EEEECCT-----------TCCCCEEEE-
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEE---------------------------EEeCCCc-----------cCCCcCeEE-
Confidence 4688999999999999999887643 4555443 025778888
Q ss_pred EcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeec
Q 014005 123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG 202 (432)
Q Consensus 123 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~ 202 (432)
+|+|++++ +.++.|..||. +++. +|.+.
T Consensus 45 -~pdG~ilv--s~~~~V~~~d~-~G~~------------------------------------------------~W~~~ 72 (276)
T 3no2_A 45 -TKAGEILF--SYSKGAKMITR-DGRE------------------------------------------------LWNIA 72 (276)
T ss_dssp -CTTSCEEE--ECBSEEEEECT-TSCE------------------------------------------------EEEEE
T ss_pred -CCCCCEEE--eCCCCEEEECC-CCCE------------------------------------------------EEEEc
Confidence 89999888 34678999987 5541 33332
Q ss_pred ccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCC
Q 014005 203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 280 (432)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 280 (432)
......+.++.+.++|+.+++. . ++.+..+|.+ ++.+..+..... ...+......+++.+++
T Consensus 73 ------------~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~~-~~~~~~~~~~v~~~~~G- 136 (276)
T 3no2_A 73 ------------APAGCEMQTARILPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFETG-IERPHAQFRQINKNKKG- 136 (276)
T ss_dssp ------------CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT--SCEEEEEEECCS-CSSGGGSCSCCEECTTS-
T ss_pred ------------CCCCccccccEECCCCCEEEEecCCCCEEEEEeCC--CCEEEEEeccCC-CCcccccccCceECCCC-
Confidence 1122356788899999999987 5 7777777765 666665543221 12222345567889999
Q ss_pred cEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec---C
Q 014005 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY---E 356 (432)
Q Consensus 281 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~---~ 356 (432)
+++++...++.|..||.. |+. +..+.. ...+.++.+.++|.+++++.+ ++|..+|. +
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~----~w~~~~--------------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQL----LNSVKL--------------SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCE----EEEEEC--------------SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred CEEEEecCCCEEEEECCC-CCE----EEEEEC--------------CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence 999999999999999987 876 456655 235667788999999998765 78999999 4
Q ss_pred cceeEee
Q 014005 357 PVMTLSF 363 (432)
Q Consensus 357 ~~~~~~~ 363 (432)
.+.++..
T Consensus 198 ~~w~~~~ 204 (276)
T 3no2_A 198 IVRRVNA 204 (276)
T ss_dssp EEEEEEG
T ss_pred EEEEecC
Confidence 5555553
No 191
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.41 E-value=2.8e-10 Score=109.47 Aligned_cols=260 Identities=12% Similarity=0.028 Sum_probs=160.1
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEec--CCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 107 (432)
.....+..+.|+|+|++|++++.|+.|.+||+. +.+ .+.++...
T Consensus 194 ~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~---------------------------~v~~i~~G------- 239 (567)
T 1qks_A 194 DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT---------------------------TVAEIKIG------- 239 (567)
T ss_dssp ECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC---------------------------EEEEEECC-------
T ss_pred eCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc---------------------------EeEEEecC-------
Confidence 334567899999999999999999999999985 433 22334332
Q ss_pred chhhhhcceeEEEEEEc----CCCCEEEEEe-CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005 108 KSLEIEEKINRVRWCAA----PNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s----~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (432)
.....++| + |||++++++. .++.|.++|..+.+........... +.. ........+..+..++++
T Consensus 240 ------~~P~~ia~--s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~-~~~-~~~~p~~rva~i~~s~~~ 309 (567)
T 1qks_A 240 ------SEARSIET--SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT-YDE-QEYHPEPRVAAILASHYR 309 (567)
T ss_dssp ------SEEEEEEE--CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC-TTT-CCEESCCCEEEEEECSSS
T ss_pred ------CCCceeEE--ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc-ccc-ccccCCCceEEEEEcCCC
Confidence 33568899 8 6999888775 4599999998887644432221100 000 000001234455556654
Q ss_pred cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeec-C
Q 014005 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDM-K 259 (432)
Q Consensus 183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~-~ 259 (432)
..++... ...|.|.+.|...... ..+..+ ........+.|+|++++++++ .++.|.++|.. +++....++. .
T Consensus 310 ~~~vv~~-~~~g~v~~vd~~~~~~-~~v~~i--~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~-t~kl~~~i~vgg 384 (567)
T 1qks_A 310 PEFIVNV-KETGKILLVDYTDLNN-LKTTEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTK-EGKLVAIEDTGG 384 (567)
T ss_dssp SEEEEEE-TTTTEEEEEETTCSSE-EEEEEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT-TTEEEEEEECSS
T ss_pred CEEEEEe-cCCCeEEEEecCCCcc-ceeeee--eccccccCceECCCCCEEEEEeCCCCeEEEEECC-CCcEEEEEeccC
Confidence 4332221 2268888888763211 112222 234467789999999998776 68999999999 6666665532 1
Q ss_pred CCCcCCCCc-ceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccc---cccceeecccccccCCccceeeeecceeEEE
Q 014005 260 PSNMDDLTE-VITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALC---DHSARILRDAAESHGSKSFFTEIIASISDIK 334 (432)
Q Consensus 260 ~~~~~~~~~-~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~---~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~ 334 (432)
. ..|.+ .++ + ++|++..+++++. .++.|.++|..+++.. .+.++.+... ...-..++
T Consensus 385 ~---~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-------------g~g~~~i~ 446 (567)
T 1qks_A 385 Q---TPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL-------------GGGSLFIK 446 (567)
T ss_dssp S---SBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-------------CSCCCCEE
T ss_pred c---CCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC-------------CCCCEEEE
Confidence 1 23432 222 2 6888535666554 5689999999873311 1124554431 12224478
Q ss_pred EcCCCCEEEEee--------CCeEEEEecC
Q 014005 335 FANDGQHLLSRD--------YMNLKVFRYE 356 (432)
Q Consensus 335 ~s~dg~~l~s~~--------~~~i~iwd~~ 356 (432)
.+|++++|.... .+.|.++|+.
T Consensus 447 ~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~ 476 (567)
T 1qks_A 447 THPNSQYLYVDATLNPEAEISGSVAVFDIK 476 (567)
T ss_dssp CCTTCSEEEEECTTCSSHHHHTCEEEEEGG
T ss_pred eCCCCCeEEEecCCCCCcccCceEEEEECC
Confidence 899999988744 2599999993
No 192
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.40 E-value=2.7e-10 Score=105.66 Aligned_cols=257 Identities=9% Similarity=0.007 Sum_probs=156.8
Q ss_pred CcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 112 (432)
.....|+|+++|+++++...++.|++||.+++... ..... .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~---------------------------~~~~~-~----------- 171 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT---------------------------TVHPG-F----------- 171 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE---------------------------EEEET-C-----------
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE---------------------------Eeecc-C-----------
Confidence 46789999999998888777899999999876422 11222 2
Q ss_pred hcceeEEEEEEcCCCCEEEEEeCCC--eEEEEEccCccee-eeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 113 EEKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 113 ~~~v~~l~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
.... ++| +++++.|+++..++ .|.+++...+... .+...... .......++++|+...++...
T Consensus 172 -~~~~-ia~--~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~----------~~~~p~~iav~p~~g~lyv~d 237 (409)
T 3hrp_A 172 -KGGK-PAV--TKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGST----------FSGKIGAVALDETEEWLYFVD 237 (409)
T ss_dssp -CBCB-CEE--CTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTT----------SCSCCCBCEECTTSSEEEEEC
T ss_pred -CCCc-eeE--ecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccch----------hcCCcEEEEEeCCCCeEEEEE
Confidence 2334 889 89999988887765 7888888765432 22111110 014567889999555555544
Q ss_pred eeccceEEEEeecccccceeeEE--e-ecCCCCCe-e-EEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEeecC-CC
Q 014005 190 WTENMATKIANVGNSVHARCQKV--Y-PHAHDFNI-N-SISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMK-PS 261 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~--~-~~~~~~~i-~-~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~-~~ 261 (432)
. ++.|..||.... ..... . ..+....- . .++|+|+ +.++++- .++.|+.|+.+ +......... ..
T Consensus 238 ~--~~~I~~~d~~~~---~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~--g~~~~~~g~~~~~ 310 (409)
T 3hrp_A 238 S--NKNFGRFNVKTQ---EVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD--GECEWFCGSATQK 310 (409)
T ss_dssp T--TCEEEEEETTTC---CEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECTTCC
T ss_pred C--CCcEEEEECCCC---CEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC--CCEEEEEeCCCCC
Confidence 3 778999998732 22111 0 12222222 3 9999996 5444455 78899999987 2222221100 00
Q ss_pred Cc------CCCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccceeecccccccCCcc--ceeeeecceeE
Q 014005 262 NM------DDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKS--FFTEIIASISD 332 (432)
Q Consensus 262 ~~------~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~--~~~~~~~~v~~ 332 (432)
.. ...-.....++++|++ +++++-. .++.|+.||+.++.. ..+.++........ ...........
T Consensus 311 g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v-----~~~~g~~~~~g~~~g~~~~~~~~~P~g 384 (409)
T 3hrp_A 311 TVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYV-----STVAGQVDVASQIDGTPLEATFNYPYD 384 (409)
T ss_dssp SCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEE-----EEEEECTTCBSCCCBSTTTCCBSSEEE
T ss_pred CcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEE-----EEEeCCCCCCCcCCCChhceEeCCceE
Confidence 00 0112357899999999 8777777 789999999877763 44544211100000 00001246789
Q ss_pred EEEcCCCCEEEEeeC-CeEEEEec
Q 014005 333 IKFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 333 ~~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
++++++|.++++... ++|+.+++
T Consensus 385 iavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 385 ICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEcCCCCEEEEECCCCeEEEEEe
Confidence 999999877777544 78877654
No 193
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.39 E-value=2.8e-10 Score=113.70 Aligned_cols=212 Identities=10% Similarity=0.005 Sum_probs=134.3
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCC-----eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..+..++| ||||++|+.+..++ .|++||+.+++....... ...+..++|+|+++.++.+
T Consensus 125 ~~~~~~~~--SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~--------------~~~~~~~~wspDg~~l~~~ 188 (710)
T 2xdw_A 125 VALRGYAF--SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--------------RVKFSCMAWTHDGKGMFYN 188 (710)
T ss_dssp EEEEEEEE--CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--------------EECSCCEEECTTSSEEEEE
T ss_pred EEEEEEEE--CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc--------------CcccceEEEEeCCCEEEEE
Confidence 46788999 99999998875543 899999999875442111 1235678999999988877
Q ss_pred eeec--------------cceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE-c-----CCeEEEEeCC
Q 014005 189 EWTE--------------NMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-D-----DLRINLWNLE 247 (432)
Q Consensus 189 ~~~~--------------~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~-----d~~i~lwd~~ 247 (432)
.... ...|.+|++.... ......+. ..+...+..+.|+|+|++|+.+ . +..|++||+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~-~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 267 (710)
T 2xdw_A 189 AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ-SEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ 267 (710)
T ss_dssp ECCCCSSCCSSSCCCCCCCCEEEEEETTSCG-GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred EECCccccccccccccCCCCEEEEEECCCCc-ccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECc
Confidence 6521 1238999987432 11122221 2345568899999999998876 4 5689999998
Q ss_pred C------CCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC----CeEEEEEccccccccccceeeccccccc
Q 014005 248 I------SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDAAESH 317 (432)
Q Consensus 248 ~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~h~~~~ 317 (432)
. .......+ ..+...+.. .|+|+| ..|+..+.+ +.|.+||+.++... ..+.+..|..
T Consensus 268 ~~~~~~~~~~~~~~l-------~~~~~~~~~-~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~~~~~-- 334 (710)
T 2xdw_A 268 QESNGITGILKWVKL-------IDNFEGEYD-YVTNEG-TVFTFKTNRHSPNYRLINIDFTDPEES--KWKVLVPEHE-- 334 (710)
T ss_dssp GSSSSSCSSCCCEEE-------ECSSSSCEE-EEEEET-TEEEEEECTTCTTCEEEEEETTSCCGG--GCEEEECCCS--
T ss_pred ccccccCCccceEEe-------eCCCCcEEE-EEeccC-CEEEEEECCCCCCCEEEEEeCCCCCcc--cceeccCCCC--
Confidence 3 11123333 334444444 488888 655555432 36999999876420 0234443300
Q ss_pred CCccceeeeecceeEEEEcCCCCEEEEe-eCC--eEEEEec---CcceeEeec
Q 014005 318 GSKSFFTEIIASISDIKFANDGQHLLSR-DYM--NLKVFRY---EPVMTLSFC 364 (432)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~--~i~iwd~---~~~~~~~~~ 364 (432)
...+..++|++++.++++. .++ .|++||+ +.+..+..+
T Consensus 335 ---------~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~ 378 (710)
T 2xdw_A 335 ---------KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE 378 (710)
T ss_dssp ---------SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC
T ss_pred ---------CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC
Confidence 1267889999877777776 445 5666776 334555544
No 194
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.38 E-value=1.3e-09 Score=96.37 Aligned_cols=233 Identities=9% Similarity=0.002 Sum_probs=157.0
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeee--cCCccccccch
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEFDYLKS 109 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~h~~~~~~~~~ 109 (432)
...+.+++++++|.++++...++.|..|+.+... ..+. ...
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-----------------------------~~~~~~~~~-------- 98 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITKKGII-----------------------------KEYTLPNPD-------- 98 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-----------------------------EEEECSSTT--------
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECCCCcE-----------------------------EEEeCCCcC--------
Confidence 4678999999999988887778889999875211 1111 122
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
..+.++++ .+++.++++...++.|..||. +++...... ... ...+..+++++++...+...
T Consensus 99 ----~~~~~i~~--~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~-~~~-----------~~~~~~i~~~~~g~l~v~~~ 159 (299)
T 2z2n_A 99 ----SAPYGITE--GPNGDIWFTEMNGNRIGRITD-DGKIREYEL-PNK-----------GSYPSFITLGSDNALWFTEN 159 (299)
T ss_dssp ----CCEEEEEE--CTTSCEEEEETTTTEEEEECT-TCCEEEEEC-SST-----------TCCEEEEEECTTSCEEEEET
T ss_pred ----CCceeeEE--CCCCCEEEEecCCceEEEECC-CCCEEEecC-CCC-----------CCCCceEEEcCCCCEEEEeC
Confidence 56788999 889988887777889999998 554333211 111 13567788888886655443
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
. ++.+..+|.. ++............+..++++++++..++. .++.|..||.. +.... +. ...+..
T Consensus 160 ~--~~~i~~~~~~----g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~-~~-----~~~~~~ 225 (299)
T 2z2n_A 160 Q--NNAIGRITES----GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTS--GEITE-FK-----IPTPNA 225 (299)
T ss_dssp T--TTEEEEECTT----CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT--CCEEE-EE-----CSSTTC
T ss_pred C--CCEEEEEcCC----CcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCC--CcEEE-EE-----CCCCCC
Confidence 3 5678888872 122222113345678899999999877777 78899999984 33222 21 133456
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeec--ccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR--DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~ 346 (432)
.+.++++++++ +++++...++.|..||. +++. ..+. .+ ...+.++++ ++|++.++..
T Consensus 226 ~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~-----~~~~~~~~-------------~~~~~~i~~-~~g~l~v~~~ 284 (299)
T 2z2n_A 226 RPHAITAGAGI-DLWFTEWGANKIGRLTS-NNII-----EEYPIQIK-------------SAEPHGICF-DGETIWFAME 284 (299)
T ss_dssp CEEEEEECSTT-CEEEEETTTTEEEEEET-TTEE-----EEEECSSS-------------SCCEEEEEE-CSSCEEEEET
T ss_pred CceeEEECCCC-CEEEeccCCceEEEECC-CCce-----EEEeCCCC-------------CCccceEEe-cCCCEEEEec
Confidence 78999999998 87776667889999998 4442 3332 21 356889999 9998877754
Q ss_pred CCeEEEEec
Q 014005 347 YMNLKVFRY 355 (432)
Q Consensus 347 ~~~i~iwd~ 355 (432)
.+.+..+|.
T Consensus 285 ~~~l~~~~~ 293 (299)
T 2z2n_A 285 CDKIGKLTL 293 (299)
T ss_dssp TTEEEEEEE
T ss_pred CCcEEEEEc
Confidence 567777765
No 195
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.38 E-value=7.5e-11 Score=104.57 Aligned_cols=202 Identities=8% Similarity=-0.050 Sum_probs=136.1
Q ss_pred cceeEEEEEEcCCCC-EEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
....+++| +|+++ +++++..++.|..|+..++ ...+.. +. ..+..+++++++..++....
T Consensus 28 ~~~eg~~~--d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~---~~-----------~~~~~l~~~~dg~l~v~~~~-- 88 (296)
T 3e5z_A 28 TWTEGPVY--VPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMH---PS-----------HHQNGHCLNKQGHLIACSHG-- 88 (296)
T ss_dssp SSEEEEEE--EGGGTEEEEEEGGGTEEEEEETTSC-EEEEES---SC-----------SSEEEEEECTTCCEEEEETT--
T ss_pred ccccCCeE--eCCCCEEEEEeCCCCEEEEEECCCC-eEEEEC---CC-----------CCcceeeECCCCcEEEEecC--
Confidence 56778999 88998 7778888999999999877 433322 12 45778999999987665544
Q ss_pred cceEEEEeecccccceeeEEee--c-CCCCCeeEEEeCCCCCEEEE----E-c-------------CCeEEEEeCCCCCc
Q 014005 193 NMATKIANVGNSVHARCQKVYP--H-AHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISDQ 251 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~--~-~~~~~i~~~~~~~~~~~l~~----~-~-------------d~~i~lwd~~~~~~ 251 (432)
++.|.+||.. +++...... . .....++.++++|+|+++++ | . .+.|..++.. +.
T Consensus 89 ~~~i~~~d~~---~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~ 163 (296)
T 3e5z_A 89 LRRLERQREP---GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GT 163 (296)
T ss_dssp TTEEEEECST---TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SC
T ss_pred CCeEEEEcCC---CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CC
Confidence 5789999986 333332220 1 11235778999999998886 3 1 2345545444 33
Q ss_pred eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc-cccc-ccccceeecccccccCCccceeeeecc
Q 014005 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSAL-CDHSARILRDAAESHGSKSFFTEIIAS 329 (432)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~-~~~~-~~~~~~~~~~h~~~~~~~~~~~~~~~~ 329 (432)
+..+ ..+....+.++|+|++ +.+++.+.++.|.+||+. +++. .. ...+..+ ...
T Consensus 164 -~~~~-------~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~--~~~~~~~-------------~~~ 219 (296)
T 3e5z_A 164 -LSAP-------IRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQ--GVHFTVE-------------PGK 219 (296)
T ss_dssp -EEEE-------ECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEE--EEEECCS-------------SSC
T ss_pred -EEEe-------ecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCC--CeEeeCC-------------CCC
Confidence 2222 3445567899999999 777777788999999987 3432 10 1222211 345
Q ss_pred eeEEEEcCCCCEEEEeeCCeEEEEec--CcceeEeec
Q 014005 330 ISDIKFANDGQHLLSRDYMNLKVFRY--EPVMTLSFC 364 (432)
Q Consensus 330 v~~~~~s~dg~~l~s~~~~~i~iwd~--~~~~~~~~~ 364 (432)
+.+++++++|+++++. .+.|.+||. +.+..+..+
T Consensus 220 p~~i~~d~~G~l~v~~-~~~v~~~~~~g~~~~~~~~~ 255 (296)
T 3e5z_A 220 TDGLRVDAGGLIWASA-GDGVHVLTPDGDELGRVLTP 255 (296)
T ss_dssp CCSEEEBTTSCEEEEE-TTEEEEECTTSCEEEEEECS
T ss_pred CCeEEECCCCCEEEEc-CCeEEEECCCCCEEEEEECC
Confidence 6789999999987777 789999999 455555444
No 196
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.35 E-value=5.3e-09 Score=92.46 Aligned_cols=237 Identities=6% Similarity=-0.060 Sum_probs=159.2
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
...+.++.++++|++.++...++.|.+|+.. ++.. . ..+..+.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-------------------------~-~~~~~~~---------- 61 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-------------------------E-FEVPTPD---------- 61 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-------------------------E-EECSSTT----------
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-------------------------E-EECCCCC----------
Confidence 4578999999999988877778899999976 3311 0 0111222
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
..+.++++ .+++.++++...++.|..+|.. ++..... ..... ..+..+++.+++...+....
T Consensus 62 --~~~~~i~~--~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~-~~~~~-----------~~~~~i~~~~~g~l~v~~~~- 123 (300)
T 2qc5_A 62 --AKVMCLIV--SSLGDIWFTENGANKIGKLSKK-GGFTEYP-LPQPD-----------SGPYGITEGLNGDIWFTQLN- 123 (300)
T ss_dssp --CCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEE-CSSTT-----------CCEEEEEECSTTCEEEEETT-
T ss_pred --CcceeEEE--CCCCCEEEEecCCCeEEEECCC-CCeEEec-CCCCC-----------CCCccceECCCCCEEEEccC-
Confidence 56788999 8889877777667899999987 5543221 11111 35667788888776665443
Q ss_pred ccceEEEEeecccccceeeE-EeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 192 ENMATKIANVGNSVHARCQK-VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
++.+..++... +... .+ ......+..+++.++++..++. .++.|..+|.. +.... +. .......
T Consensus 124 -~~~i~~~~~~g----~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~--g~~~~-~~-----~~~~~~~ 189 (300)
T 2qc5_A 124 -GDRIGKLTADG----TIYEYDL-PNKGSYPAFITLGSDNALWFTENQNNSIGRITNT--GKLEE-YP-----LPTNAAA 189 (300)
T ss_dssp -TTEEEEECTTS----CEEEEEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT--CCEEE-EE-----CSSTTCC
T ss_pred -CCeEEEECCCC----CEEEccC-CCCCCCceeEEECCCCCEEEEecCCCeEEEECCC--CcEEE-ee-----CCCCCCC
Confidence 56777777651 1211 12 3345678999999999976666 68899999985 33322 21 1233456
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CC
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 348 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~ 348 (432)
+..+++++++ ++.++....+.|.+||. +++.. ...+..+ ...+.+++++++|++.++.. .+
T Consensus 190 ~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~---~~~~~~~-------------~~~~~~i~~d~~g~l~v~~~~~~ 251 (300)
T 2qc5_A 190 PVGITSGNDG-ALWFVEIMGNKIGRITT-TGEIS---EYDIPTP-------------NARPHAITAGKNSEIWFTEWGAN 251 (300)
T ss_dssp EEEEEECTTS-SEEEEETTTTEEEEECT-TCCEE---EEECSST-------------TCCEEEEEECSTTCEEEEETTTT
T ss_pred cceEEECCCC-CEEEEccCCCEEEEEcC-CCcEE---EEECCCC-------------CCCceEEEECCCCCEEEeccCCC
Confidence 8999999998 87777667788999998 44431 1111111 35678999999998777653 48
Q ss_pred eEEEEec
Q 014005 349 NLKVFRY 355 (432)
Q Consensus 349 ~i~iwd~ 355 (432)
.|..||.
T Consensus 252 ~i~~~~~ 258 (300)
T 2qc5_A 252 QIGRITN 258 (300)
T ss_dssp EEEEECT
T ss_pred eEEEECC
Confidence 9999998
No 197
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.34 E-value=8.5e-10 Score=106.10 Aligned_cols=233 Identities=9% Similarity=0.074 Sum_probs=154.6
Q ss_pred EcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEE
Q 014005 40 FDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV 119 (432)
Q Consensus 40 fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l 119 (432)
.+|.+.++++...+++|.++|..+++.+ .++... ..+..+
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~---------------------------~~i~~g-------------~~p~~v 202 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIK---------------------------TVLDTG-------------YAVHIS 202 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEE---------------------------EEEECS-------------SCEEEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEE---------------------------EEEeCC-------------CCccce
Confidence 3355567778888999999999887643 344322 346688
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcc--CcceeeeeecCCCCccccccccccccccccccCC----CCCcceecceeecc
Q 014005 120 RWCAAPNGSMFILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP----PSFAHGYHLEWTEN 193 (432)
Q Consensus 120 ~~~~s~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~ 193 (432)
.| +|||+++++++.|+.|.+||+. +.+.. ...... .....++++ |++++++.+... +
T Consensus 203 ~~--SpDGr~lyv~~~dg~V~viD~~~~t~~~v--~~i~~G------------~~P~~ia~s~~~~pDGk~l~v~n~~-~ 265 (567)
T 1qks_A 203 RL--SASGRYLFVIGRDGKVNMIDLWMKEPTTV--AEIKIG------------SEARSIETSKMEGWEDKYAIAGAYW-P 265 (567)
T ss_dssp EE--CTTSCEEEEEETTSEEEEEETTSSSCCEE--EEEECC------------SEEEEEEECCSTTCTTTEEEEEEEE-T
T ss_pred EE--CCCCCEEEEEcCCCeEEEEECCCCCCcEe--EEEecC------------CCCceeEEccccCCCCCEEEEEEcc-C
Confidence 99 9999999999999999999995 54432 222211 235678899 699988887652 5
Q ss_pred ceEEEEeecccccceeeEEeecC---------C-CCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCC
Q 014005 194 MATKIANVGNSVHARCQKVYPHA---------H-DFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPS 261 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~---------~-~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~ 261 (432)
+.+.++|.. +.+.++.+... | ...+..+..++++..++.. .+|.|.++|.. ....+.+..+
T Consensus 266 ~~v~ViD~~---t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~-~~~~~~v~~i--- 338 (567)
T 1qks_A 266 PQYVIMDGE---TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT-DLNNLKTTEI--- 338 (567)
T ss_dssp TEEEEEETT---TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT-CSSEEEEEEE---
T ss_pred CeEEEEECC---CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecC-CCccceeeee---
Confidence 789999977 55666655211 1 2267788899987776655 78999999998 3333332211
Q ss_pred CcCCCCcceEEEEEcCCCCcEEEEE-eCCCeEEEEEccccccccccceeecc-cccccCCccceeeeecceeEEE-EcCC
Q 014005 262 NMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRD-AAESHGSKSFFTEIIASISDIK-FAND 338 (432)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~~v~~~~-~s~d 338 (432)
........+.|+|++ ++|+++ ..++.|.++|+.++++ ...+.- -. .| |.+ .... ++|+
T Consensus 339 ---~~~~~~~d~~~~pdg-r~~~va~~~sn~V~ViD~~t~kl----~~~i~vgg~-~P--------hpg--~g~~~~~p~ 399 (567)
T 1qks_A 339 ---SAERFLHDGGLDGSH-RYFITAANARNKLVVIDTKEGKL----VAIEDTGGQ-TP--------HPG--RGANFVHPT 399 (567)
T ss_dssp ---ECCSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTTTEE----EEEEECSSS-SB--------CCT--TCEEEEETT
T ss_pred ---eccccccCceECCCC-CEEEEEeCCCCeEEEEECCCCcE----EEEEeccCc-CC--------CCc--cceeeECCC
Confidence 122346788999999 666554 4678999999998875 233221 00 00 011 1222 5887
Q ss_pred -CCEEEEe--eCCeEEEEec
Q 014005 339 -GQHLLSR--DYMNLKVFRY 355 (432)
Q Consensus 339 -g~~l~s~--~~~~i~iwd~ 355 (432)
|...+++ +++.|.++|.
T Consensus 400 ~g~v~~t~~~g~~~Vsvid~ 419 (567)
T 1qks_A 400 FGPVWATSHMGDDSVALIGT 419 (567)
T ss_dssp TEEEEEEEBSSSSEEEEEEC
T ss_pred CCcEEEeCCCCCCeEEEecC
Confidence 5555555 3489999998
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.33 E-value=3.8e-10 Score=112.47 Aligned_cols=201 Identities=9% Similarity=0.005 Sum_probs=124.9
Q ss_pred cceeEEEEEEcCCCCEEEEE-----eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 114 EKINRVRWCAAPNGSMFILS-----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..+..++| ||||++|+.+ +.+..|++||+.+++........ ......++|+|+++.++..
T Consensus 121 ~~~~~~~~--SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~-------------~~~~~~~~wspDg~~l~~~ 185 (695)
T 2bkl_A 121 VSLGTWAV--SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE-------------GGKYATPKWTPDSKGFYYE 185 (695)
T ss_dssp EEEEEEEE--CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS-------------CCTTCCCEECTTSSEEEEE
T ss_pred EEEEEEEE--CCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC-------------cccccceEEecCCCEEEEE
Confidence 57889999 9999999844 44568999999988743110110 0122678999999988877
Q ss_pred eeec-----------cceEEEEeecccccc-eeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCC----eEEEEeCCCCCc
Q 014005 189 EWTE-----------NMATKIANVGNSVHA-RCQKVYPHAHDFNINSISNNSDCETFVSA-DDL----RINLWNLEISDQ 251 (432)
Q Consensus 189 ~~~~-----------~~~v~i~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~----~i~lwd~~~~~~ 251 (432)
.... ...|++|++...... ..+... ..+...+..+.|+|+|++++.+ .++ .|++||.. .+.
T Consensus 186 ~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~-~~~ 263 (695)
T 2bkl_A 186 WLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER-TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG-EKD 263 (695)
T ss_dssp ECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC-CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT-CSS
T ss_pred EecCCCCCccccCCCCCEEEEEECCCCchhceEEEec-CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC-CCc
Confidence 6511 224999998744221 222222 3455678899999999998876 554 56666654 233
Q ss_pred eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe---CCCeEEEEEccccccccccceeecccccccCCccceeeeec
Q 014005 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (432)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 328 (432)
...+ ..+...+....+ +++ .+++.+. .++.|.+||+.++... . ...+..|. ...
T Consensus 264 -~~~l-------~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~-~-~~~l~~~~-----------~~~ 320 (695)
T 2bkl_A 264 -FRLL-------VKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARA-S-WKEIVPED-----------SSA 320 (695)
T ss_dssp -CEEE-------EECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGG-G-CEEEECCC-----------SSC
T ss_pred -eEEe-------ecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCcc-C-CeEEecCC-----------CCC
Confidence 2322 333344555556 677 5444443 2578999999876420 0 12332210 024
Q ss_pred ceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005 329 SISDIKFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 329 ~v~~~~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
.+..++|+ ++.++++. .++..++|.+
T Consensus 321 ~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 321 SLLSVSIV-GGHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred eEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 57788888 66677775 4577777765
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.32 E-value=2.9e-10 Score=99.17 Aligned_cols=198 Identities=6% Similarity=-0.090 Sum_probs=136.3
Q ss_pred CcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeee-cCCccccccchhh
Q 014005 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKSLE 111 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~h~~~~~~~~~~~ 111 (432)
..+.+++++++|+++++.. ++.|.+||.++.... .+. ...
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~----------------------------~~~~~~~---------- 107 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT----------------------------VLPFDGL---------- 107 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE----------------------------ECCCCSC----------
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe----------------------------eeecCCc----------
Confidence 4678899999999766665 889999997664321 111 111
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
..+.++++ +++++++++...++.|.+|+..+...... .... ......+++++++...++...
T Consensus 108 --~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~~~-----------~~~p~~i~~~~~g~l~v~~~~- 169 (270)
T 1rwi_B 108 --NYPEGLAV--DTQGAVYVADRGNNRVVKLAAGSKTQTVL--PFTG-----------LNDPDGVAVDNSGNVYVTDTD- 169 (270)
T ss_dssp --SSEEEEEE--CTTCCEEEEEGGGTEEEEECTTCCSCEEC--CCCS-----------CCSCCCEEECTTCCEEEEEGG-
T ss_pred --CCCcceEE--CCCCCEEEEECCCCEEEEEECCCceeEee--cccc-----------CCCceeEEEeCCCCEEEEECC-
Confidence 45788999 88998777777788999997654432211 1111 135677888888875555444
Q ss_pred ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (432)
++.|.+|+... ....... ..+...+..++++++|..+++. .++.|.+||.. ...... . ...+...+
T Consensus 170 -~~~i~~~~~~~---~~~~~~~-~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~-~------~~~~~~~p 236 (270)
T 1rwi_B 170 -NNRVVKLEAES---NNQVVLP-FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG-STTSTV-L------PFTGLNTP 236 (270)
T ss_dssp -GTEEEEECTTT---CCEEECC-CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT-CSCCEE-C------CCCSCSCE
T ss_pred -CCEEEEEecCC---CceEeec-ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC-CCccee-e------ccCCCCCc
Confidence 67899998763 2222222 2333678999999999777777 78999999987 332222 1 12233568
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccccc
Q 014005 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 301 (432)
Q Consensus 271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 301 (432)
.+++++|++ +++++...++.|+++++...+
T Consensus 237 ~~i~~~~~g-~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 237 LAVAVDSDR-TVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEECTTC-CEEEEEGGGTEEEEECCCGGG
T ss_pred eeEEECCCC-CEEEEECCCCEEEEEcCCCcc
Confidence 999999999 888888899999999988654
No 200
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.30 E-value=4.3e-09 Score=94.59 Aligned_cols=228 Identities=14% Similarity=0.003 Sum_probs=143.1
Q ss_pred EEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 35 VSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 35 V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
..+..|+|+++ ++++...++.|..||.++++. ..+. ..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~----------------------------~~~~-~~------------ 89 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRK----------------------------TVHA-LP------------ 89 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE----------------------------EEEE-CS------------
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE----------------------------EEEE-CC------------
Confidence 46789999754 566666788999999877542 1121 23
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee--
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT-- 191 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-- 191 (432)
..+.++.| +++++++++. . +.|.+||..+++...+....... ....+..+.+++++.+.+.....
T Consensus 90 ~~v~~i~~--~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~---------~~~~~~~i~~d~~G~l~v~~~~~~~ 156 (326)
T 2ghs_A 90 FMGSALAK--ISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDL---------PGNRSNDGRMHPSGALWIGTMGRKA 156 (326)
T ss_dssp SCEEEEEE--EETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTC---------TTEEEEEEEECTTSCEEEEEEETTC
T ss_pred CcceEEEE--eCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCC---------CCCCCCCEEECCCCCEEEEeCCCcC
Confidence 56889999 7788776654 4 45999999888765543321100 11457788899998865543210
Q ss_pred ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCC-CCC-ce--eeEeecCCCCcCC
Q 014005 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLE-ISD-QC--FNIVDMKPSNMDD 265 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~-~~~-~~--~~~~~~~~~~~~~ 265 (432)
......+|.+. .++..... ......+.++|+|+++.++.+ .++.|.+||++ .++ .. .+.+. .+..
T Consensus 157 ~~~~~~l~~~~---~g~~~~~~--~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~----~~~~ 227 (326)
T 2ghs_A 157 ETGAGSIYHVA---KGKVTKLF--ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI----DSTG 227 (326)
T ss_dssp CTTCEEEEEEE---TTEEEEEE--EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE----ECTT
T ss_pred CCCceEEEEEe---CCcEEEee--CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE----ECCC
Confidence 01233444443 12222221 223457789999999877655 57899999985 123 21 11110 1122
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc-CCCCEEEE
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-NDGQHLLS 344 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~s 344 (432)
....+..++++++| ++.++...++.|.+||. +++. +..+..+ ...+.+++|+ ++++.|..
T Consensus 228 ~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~-~g~~----~~~i~~~-------------~~~~~~~af~g~d~~~L~v 288 (326)
T 2ghs_A 228 IKGGMDGSVCDAEG-HIWNARWGEGAVDRYDT-DGNH----IARYEVP-------------GKQTTCPAFIGPDASRLLV 288 (326)
T ss_dssp SSSEEEEEEECTTS-CEEEEEETTTEEEEECT-TCCE----EEEEECS-------------CSBEEEEEEESTTSCEEEE
T ss_pred CCCCCCeeEECCCC-CEEEEEeCCCEEEEECC-CCCE----EEEEECC-------------CCCcEEEEEecCCCCEEEE
Confidence 34557889999999 87777767789999998 4554 3555542 3568999998 88876654
No 201
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.28 E-value=1.7e-09 Score=97.36 Aligned_cols=215 Identities=8% Similarity=-0.075 Sum_probs=138.2
Q ss_pred CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
.......++++++|+.+++...++.|.+||..+++.. ..+......
T Consensus 82 ~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~---------------------------~~i~~g~~~------- 127 (328)
T 3dsm_A 82 GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT---------------------------GYIECPDMD------- 127 (328)
T ss_dssp CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE---------------------------EEEECTTCC-------
T ss_pred CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE---------------------------EEEEcCCcc-------
Confidence 3456888999999965555547899999999886532 222211000
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEe--CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 111 EIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
........+++ .++ .++.+. .++.|.++|+.+++........ .....+.+++++.+.+..
T Consensus 128 ~~~~~p~~i~~---~~~-~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--------------~~p~~i~~~~dG~l~v~~ 189 (328)
T 3dsm_A 128 MESGSTEQMVQ---YGK-YVYVNCWSYQNRILKIDTETDKVVDELTIG--------------IQPTSLVMDKYNKMWTIT 189 (328)
T ss_dssp TTTCBCCCEEE---ETT-EEEEEECTTCCEEEEEETTTTEEEEEEECS--------------SCBCCCEECTTSEEEEEB
T ss_pred ccCCCcceEEE---ECC-EEEEEcCCCCCEEEEEECCCCeEEEEEEcC--------------CCccceEEcCCCCEEEEE
Confidence 00024556666 234 444444 4899999999988754433322 234678888988866665
Q ss_pred eeec--------cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCC
Q 014005 189 EWTE--------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKP 260 (432)
Q Consensus 189 ~~~~--------~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~ 260 (432)
.... .+.|.++|.. +.+....+..........++++|+++.+.++.. .|.+||.. +++.....
T Consensus 190 ~~~~~~~~~~~~~~~v~~id~~---t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~-t~~~~~~~---- 260 (328)
T 3dsm_A 190 DGGYEGSPYGYEAPSLYRIDAE---TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVE-ADRVPVRP---- 260 (328)
T ss_dssp CCBCTTCSSCBCCCEEEEEETT---TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETT-CSSCCSSC----
T ss_pred CCCccCCccccCCceEEEEECC---CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECC-CCceeeee----
Confidence 4410 2689999987 555555552222347899999999999888833 89999998 44432110
Q ss_pred CCcCCCCcceEEEEEcCCCCcEEEEE----eCCCeEEEEEccccccccccceeecc
Q 014005 261 SNMDDLTEVITSAEFHPIYCNLLAYS----SSRGFVRLVDMRQSALCDHSARILRD 312 (432)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~ 312 (432)
...........++++|++..++++. ..++.|.+||.. ++. +..+..
T Consensus 261 -~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~----~~~i~~ 310 (328)
T 3dsm_A 261 -FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL----IDEFYV 310 (328)
T ss_dssp -SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE----EEEEEE
T ss_pred -eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE----EEEEEe
Confidence 0122245688999999553777766 678899999988 775 455543
No 202
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.27 E-value=4.4e-10 Score=111.82 Aligned_cols=240 Identities=11% Similarity=0.072 Sum_probs=147.5
Q ss_pred CCCcEEEEEEcCCCCEEEE-----ecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005 31 DVDIVSAIEFDKTGDYLAV-----GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 105 (432)
|...+..++|||||++||. |+...+|++||+++++.. ..+.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~------------------------------~~~~~~-- 174 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL------------------------------ETPLKD-- 174 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE------------------------------EEEEEE--
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCC------------------------------ccccCC--
Confidence 4457889999999999984 444468999999987632 111100
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEEeCCC-------------eEEEEEccCcce--eeeeecCC-CCcccccccccc
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDK-------------TIKLWKVRDQKV--KKIKEMDH-FPFVSSENTLLA 169 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~-------------~i~iwd~~~~~~--~~~~~~~~-~~~~~~~~~~~~ 169 (432)
.....++| + |++.|+.++.+. .|++|++.++.. ..+..... ++
T Consensus 175 --------~k~~~~~W--s-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~---------- 233 (693)
T 3iuj_A 175 --------VKFSGISW--L-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH---------- 233 (693)
T ss_dssp --------EESCCCEE--E-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGC----------
T ss_pred --------ceeccEEE--e-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCC----------
Confidence 12357889 8 999999888774 399999977653 22322221 12
Q ss_pred ccccccccCCCCCcceecceeec--cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEE-EE-c---CCeEE
Q 014005 170 EKNFMNEHNPPSFAHGYHLEWTE--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-D---DLRIN 242 (432)
Q Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~-~---d~~i~ 242 (432)
.....+.+++++++++...... .+.+.++|+... .. ....+ ..+....... +++++..|+ .+ . .+.|.
T Consensus 234 -~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~-~~-~~~~l-~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~ 308 (693)
T 3iuj_A 234 -HRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE-NA-PLLTV-QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLV 308 (693)
T ss_dssp -CSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST-TC-CCEEE-ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEE
T ss_pred -eEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC-CC-ceEEE-eCCCCceEEE-EeccCCEEEEEECCCCCCCEEE
Confidence 2356788999999886654322 358889988632 11 23333 3444444444 556665554 44 3 36799
Q ss_pred EEeCCCCCc-eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe-CCC--eEEEEEccccccccccceeecccccccC
Q 014005 243 LWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRG--FVRLVDMRQSALCDHSARILRDAAESHG 318 (432)
Q Consensus 243 lwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~ 318 (432)
.+|+..... ..+.+ ..+...+. .|++++ +.|+... .++ .|++||+..+.. +.+...
T Consensus 309 ~~d~~~~~~~~~~~l-------~~~~~~~~--~~s~~g-~~lv~~~~~~g~~~l~~~d~~g~~~-----~~l~~p----- 368 (693)
T 3iuj_A 309 TVDAANPGPAHWRDL-------IPERQQVL--TVHSGS-GYLFAEYMVDATARVEQFDYEGKRV-----REVALP----- 368 (693)
T ss_dssp EEETTSCCGGGCEEE-------ECCCSSCE--EEEEET-TEEEEEEEETTEEEEEEECTTSCEE-----EEECCS-----
T ss_pred EEeCCCCCccccEEE-------ecCCCCEE--EEEEEC-CEEEEEEEECCeeEEEEEECCCCee-----EEeecC-----
Confidence 999983321 12222 33444444 889988 6565554 454 688999875432 333320
Q ss_pred CccceeeeecceeEEEEcCCCCEEEE-eeC----CeEEEEec
Q 014005 319 SKSFFTEIIASISDIKFANDGQHLLS-RDY----MNLKVFRY 355 (432)
Q Consensus 319 ~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~----~~i~iwd~ 355 (432)
....+..+.+++++..|+. .+. ++++.||+
T Consensus 369 -------~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 369 -------GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp -------SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred -------CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 0345777788888876654 222 89999998
No 203
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.26 E-value=3.4e-09 Score=94.29 Aligned_cols=237 Identities=10% Similarity=-0.052 Sum_probs=148.9
Q ss_pred cCCCcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005 30 QDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 108 (432)
..........|+|+|+ +++++..++.|..|+... +. ..+..+.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~~----------------------------~~~~~~~------- 85 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-TV----------------------------DVLLDAT------- 85 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-CE----------------------------EEEEESC-------
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-CE----------------------------EEEeCCC-------
Confidence 3455678899999998 567777788999998733 21 2333344
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec-
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH- 187 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~- 187 (432)
..+..+++ +++|+++++...++.|.+|+.. ++...+...... .....+..+++++++...++
T Consensus 86 -----~~~~gl~~--d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~---------~~~~~~~~i~~d~dG~l~~td 148 (305)
T 3dr2_A 86 -----AFTNGNAV--DAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAG---------KRLNSPNDLIVARDGAIWFTD 148 (305)
T ss_dssp -----SCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEECEETT---------EECSCCCCEEECTTSCEEEEC
T ss_pred -----CccceeeE--CCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCC---------CccCCCCCEEECCCCCEEEeC
Confidence 66889999 8999877666666889999986 554333221100 01134677889999887764
Q ss_pred ---ceee-----------ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC------CeEEEEeC
Q 014005 188 ---LEWT-----------ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------LRINLWNL 246 (432)
Q Consensus 188 ---~~~~-----------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d------~~i~lwd~ 246 (432)
|... ..+.|..+|... ++... + . .....+.++|+|+++.|+.+ .. +.|..|++
T Consensus 149 ~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~---g~~~~-~-~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~ 222 (305)
T 3dr2_A 149 PPFGLRKPSQGCPADPELAHHSVYRLPPDG---SPLQR-M-A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAW 222 (305)
T ss_dssp CSGGGSCGGGSCCCCCSSSCEEEEEECSSS---CCCEE-E-E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEE
T ss_pred cCCCccccccccccccccCCCeEEEEcCCC---CcEEE-E-e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEe
Confidence 3210 024566666542 22222 2 1 23457889999999988777 44 78999998
Q ss_pred CCCCce--eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcccee
Q 014005 247 EISDQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (432)
Q Consensus 247 ~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 324 (432)
. .+.. ...+ ..........++++++| ++.+ +..+ .|.+||.. ++. +..+..+
T Consensus 223 ~-~~~l~~~~~~------~~~~~~~pdgi~~d~~G-~lwv-~~~~-gv~~~~~~-g~~----~~~~~~~----------- 276 (305)
T 3dr2_A 223 R-DGALHDRRHF------ASVPDGLPDGFCVDRGG-WLWS-SSGT-GVCVFDSD-GQL----LGHIPTP----------- 276 (305)
T ss_dssp E-TTEEEEEEEE------ECCSSSCCCSEEECTTS-CEEE-CCSS-EEEEECTT-SCE----EEEEECS-----------
T ss_pred c-CCCccCCeEE------EECCCCCCCeEEECCCC-CEEE-ecCC-cEEEECCC-CCE----EEEEECC-----------
Confidence 7 3321 1111 01122345678999999 7544 4444 59999974 554 3555542
Q ss_pred eeecceeEEEEcCCCCEEEEeeCCeEEEEe
Q 014005 325 EIIASISDIKFANDGQHLLSRDYMNLKVFR 354 (432)
Q Consensus 325 ~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd 354 (432)
..+..++|+++++.|..++.+.+..++
T Consensus 277 ---~~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 277 ---GTASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp ---SCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred ---CceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 358899999999887776555554443
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.26 E-value=1.1e-08 Score=90.41 Aligned_cols=237 Identities=8% Similarity=-0.015 Sum_probs=154.4
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
...+.++.++++|+++++...++.|..+|.+ ++.. . .......
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-------------------------~-~~~~~~~---------- 103 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-------------------------E-YPLPQPD---------- 103 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-------------------------E-EECSSTT----------
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-------------------------E-ecCCCCC----------
Confidence 3578999999999988877667889999876 3211 0 0111122
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
..+.++++ .+++.++++...++.|..+|.. ++..... ..... ..+..+++++++...+....
T Consensus 104 --~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~~~~~-----------~~~~~i~~d~~g~l~v~~~~- 165 (300)
T 2qc5_A 104 --SGPYGITE--GLNGDIWFTQLNGDRIGKLTAD-GTIYEYD-LPNKG-----------SYPAFITLGSDNALWFTENQ- 165 (300)
T ss_dssp --CCEEEEEE--CSTTCEEEEETTTTEEEEECTT-SCEEEEE-CSSTT-----------CCEEEEEECTTSSEEEEETT-
T ss_pred --CCCccceE--CCCCCEEEEccCCCeEEEECCC-CCEEEcc-CCCCC-----------CCceeEEECCCCCEEEEecC-
Confidence 56788999 7889888777768899999987 5543221 11111 45677888888875444333
Q ss_pred ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (432)
++.+..++... +............+..++++++++..++. ..+.|..||.. +...... .......+
T Consensus 166 -~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~--g~~~~~~------~~~~~~~~ 232 (300)
T 2qc5_A 166 -NNSIGRITNTG----KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT--GEISEYD------IPTPNARP 232 (300)
T ss_dssp -TTEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT--CCEEEEE------CSSTTCCE
T ss_pred -CCeEEEECCCC----cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC--CcEEEEE------CCCCCCCc
Confidence 56777887631 12221112345678899999999877777 67889999985 3332221 12344568
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeE
Q 014005 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350 (432)
Q Consensus 271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i 350 (432)
.++++++++ ++.++...++.|..||. +++. ..+.. +. ....+.+++++++|++.++.. +.|
T Consensus 233 ~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~-----~~~~~-~~----------~~~~~~~i~~~~~g~l~v~~~-~~i 293 (300)
T 2qc5_A 233 HAITAGKNS-EIWFTEWGANQIGRITN-DNTI-----QEYQL-QT----------ENAEPHGITFGKDGSVWFALK-CKI 293 (300)
T ss_dssp EEEEECSTT-CEEEEETTTTEEEEECT-TSCE-----EEEEC-CS----------TTCCCCCEEECTTSCEEEECS-SEE
T ss_pred eEEEECCCC-CEEEeccCCCeEEEECC-CCcE-----EEEEC-Cc----------cCCccceeEeCCCCCEEEEcc-Cce
Confidence 999999998 77776666789999998 4543 22211 00 024678899999998777655 366
Q ss_pred EEEec
Q 014005 351 KVFRY 355 (432)
Q Consensus 351 ~iwd~ 355 (432)
..+|.
T Consensus 294 ~~~~p 298 (300)
T 2qc5_A 294 GKLNL 298 (300)
T ss_dssp EEEEE
T ss_pred EEeCC
Confidence 65553
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.23 E-value=4.4e-09 Score=105.58 Aligned_cols=198 Identities=14% Similarity=0.075 Sum_probs=121.6
Q ss_pred cceeEEEEEEcCCCCEEEEEeCC-----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..+..++| ||||++|+.++.+ ..|++||+.+++....... ...+..++|+|+ +.++.+
T Consensus 163 ~~~~~~~~--SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~--------------~~~~~~~~wspD-~~l~~~ 225 (741)
T 1yr2_A 163 TALDAWAA--SDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK--------------WVKFSGLAWLGN-DALLYS 225 (741)
T ss_dssp EEEEEEEE--CTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE--------------EEESCCCEESTT-SEEEEE
T ss_pred EEEEeEEE--CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC--------------CceeccEEEECC-CEEEEE
Confidence 46788999 9999999887543 4699999999875432110 122457899999 877766
Q ss_pred eeec------------cceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE-cCC-----eEEEEeCCCC
Q 014005 189 EWTE------------NMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDL-----RINLWNLEIS 249 (432)
Q Consensus 189 ~~~~------------~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~d~-----~i~lwd~~~~ 249 (432)
.... ...|.+|++...... ....+. ..+...+..+.|+|||++++.. .++ .|++||+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 226 RFAEPKEGQAFQALNYNQTVWLHRLGTPQSA-DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp ECCCC--------CCCCCEEEEEETTSCGGG-CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred EecCcccccccccCCCCCEEEEEECCCCchh-CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 5421 224888887643211 122231 2333468899999999998876 543 8999999832
Q ss_pred C-ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeC----CCeEEEEEccccc-cccccceeecccccccCCccce
Q 014005 250 D-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSA-LCDHSARILRDAAESHGSKSFF 323 (432)
Q Consensus 250 ~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~h~~~~~~~~~~ 323 (432)
. .+...+ ..+...+... ++|++ ..|+..+. ++.|.+||+.++. .. ...+..+
T Consensus 305 ~~~~~~~l-------~~~~~~~~~~-~~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~---~~l~~~~---------- 362 (741)
T 1yr2_A 305 KIGPVTAL-------IPDLKAQWDF-VDGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRF---DTVVPES---------- 362 (741)
T ss_dssp EECCCEEE-------ECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEECSSSSCEE---EEEECCC----------
T ss_pred CCcccEEe-------cCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCcccc---EEEecCC----------
Confidence 1 213333 2333334444 34888 66766664 3469999988642 11 2333332
Q ss_pred eeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005 324 TEIIASISDIKFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 324 ~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
...+..+.|+ ++.++++. .++..+||.+
T Consensus 363 ---~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 363 ---KDNLESVGIA-GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp ---SSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred ---CCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 3456677887 55566665 4576666655
No 206
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.23 E-value=3.4e-10 Score=102.74 Aligned_cols=189 Identities=8% Similarity=-0.009 Sum_probs=124.1
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--ee-eeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
..++.+++ ++...++++|+.++ +.+|++.... .. ....+. + ........ |..++| ++.+++.+ .
T Consensus 38 ~~~nlLai--s~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~--~----~~~~~lp~-V~~l~f--d~~~L~v~-~ 104 (388)
T 1xip_A 38 ASLQNLDI--SNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLT--F----KWEKEIPD-VIFVCF--HGDQVLVS-T 104 (388)
T ss_dssp SCCBCEEE--ETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCC--C----SEEEECTT-EEEEEE--ETTEEEEE-E
T ss_pred ccccEEEE--cCCCCEEEEeCCCE-EEEEEhhHhhhhhcccccccc--c----eEEeeCCC-eeEEEE--CCCEEEEE-c
Confidence 46889999 88888999999875 6679976443 00 000000 0 00001124 889999 88888888 4
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
++.|++||+....... .. ..+...+.++.+.+.. ++++ .||.+.+||+. .+.... +...
T Consensus 105 --~~~l~v~dv~sl~~~~---~~-~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~-~~~~~~-----------~~~~ 164 (388)
T 1xip_A 105 --RNALYSLDLEELSEFR---TV-TSFEKPVFQLKNVNNT--LVILNSVNDLSALDLR-TKSTKQ-----------LAQN 164 (388)
T ss_dssp --SSEEEEEESSSTTCEE---EE-EECSSCEEEEEECSSE--EEEEETTSEEEEEETT-TCCEEE-----------EEES
T ss_pred --CCcEEEEEchhhhccC---cc-ceeecceeeEEecCCC--EEEEECCCCEEEEEcc-CCcccc-----------ccCC
Confidence 8999999998543322 22 3456678887776543 7777 99999999998 444322 2357
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
|++++|||+| ++.|..||++++|+...++.-. .+.+.. +..-. . -.++...|.++.|.++++++++
T Consensus 165 Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~--k~~I~~-Pp~~~--~-~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 165 VTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEK--QFEFSL-PSELE--E-LPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEEECSSE---EEEEETTSCEEEEEEETTEEEE--EEEECC-CHHHH--T-SCTTTSEEEEEEESSSSEEEEE
T ss_pred ceEEEEcCCc---eEEEEcCCcEEEEcCCCccccc--cceecC-Ccccc--c-ccCCCeeEEEEEEecCCeEEEE
Confidence 9999999998 5678999999999887655200 123311 00000 0 0001578999999999999987
No 207
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.22 E-value=1.4e-08 Score=92.78 Aligned_cols=250 Identities=12% Similarity=0.026 Sum_probs=142.2
Q ss_pred EEEEcCCCCEEEEec----------ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecC-Ccccc
Q 014005 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD 105 (432)
Q Consensus 37 ~~~fsp~g~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h-~~~~~ 105 (432)
.+.|+|+|++|+++. .++.|.+||..+.+.. ..+.-- .+.+.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~---------------------------~~i~~~~~~~~~ 122 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAPRFD 122 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEE---------------------------EEEECCCccccc
Confidence 899999999988875 3678999999876532 222110 00000
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEEeC--CCeEEEEEccCcceeee-eecCCCCccccccccccccccccccCCCCC
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (432)
....-..+.| +|||++|+++.. ++.|.++| .+++.... .... + ++.+.+.+
T Consensus 123 ------~g~~p~~~~~--spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~--------------~---~~~~~~~~ 176 (373)
T 2mad_H 123 ------VGPYSWMNAN--TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP--------------T---CYHIHPGA 176 (373)
T ss_pred ------cCCCccceEE--CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC--------------c---eEEEEeCC
Confidence 0012347888 899999998864 57899999 88874332 2111 1 12233333
Q ss_pred cceecceeeccceEEEEeecccccceeeE--EeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC-ceeeEeec
Q 014005 183 AHGYHLEWTENMATKIANVGNSVHARCQK--VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDM 258 (432)
Q Consensus 183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~-~~~~~~~~ 258 (432)
...+.. ...++.+.+++. ......... ....+.........+.+++..++.. ..+.+.+.|+.... .....+++
T Consensus 177 ~~~~~~-~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~ 254 (373)
T 2mad_H 177 PSTFYL-LCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDA 254 (373)
T ss_pred CceEEE-EcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeee
Confidence 222211 123777778877 321111111 0000111111234456665554444 77889999987221 12222211
Q ss_pred CCCC---cCCCCcceEEEEEcCCCCcEEEEEeC----------CCeEEEEEccccccccccceeecccccccCCccceee
Q 014005 259 KPSN---MDDLTEVITSAEFHPIYCNLLAYSSS----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (432)
Q Consensus 259 ~~~~---~~~~~~~v~~~~~~p~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 325 (432)
.... ..........+.++|++ +.+..+.. ++.|.++|+.+++. +..+..
T Consensus 255 ~~~~~~~~~~~p~g~~~~~~s~d~-~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v----v~~i~~------------- 316 (373)
T 2mad_H 255 LSGGRKADTWRPGGWQQVAYLKSS-DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT----SSQISL------------- 316 (373)
T ss_pred cCCcccccceecCceEeEEECCCC-CEEEEEeccCCcccccCCCCeEEEEECCCCEE----EEEEEC-------------
Confidence 1100 00112234457899998 65555432 35899999998876 466654
Q ss_pred eecceeEEEEcCCCC-EEEEee--CCeEEEEec---Cccee
Q 014005 326 IIASISDIKFANDGQ-HLLSRD--YMNLKVFRY---EPVMT 360 (432)
Q Consensus 326 ~~~~v~~~~~s~dg~-~l~s~~--~~~i~iwd~---~~~~~ 360 (432)
......++|+|||+ +++++. ++.|.++|+ +.+++
T Consensus 317 -g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 317 -GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred -CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 34688999999999 676654 499999999 44444
No 208
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.20 E-value=1.4e-09 Score=98.28 Aligned_cols=255 Identities=11% Similarity=0.102 Sum_probs=145.2
Q ss_pred EEEEcCCCCEEEEec----------ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 37 ~~~fsp~g~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
.+.++|+|++|.++. .++.|.+||..+.+.. .++.--...
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~---------------------------~~I~v~~g~--- 131 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT---------------------------ADIELPDAP--- 131 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE---------------------------EEEEETTCC---
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE---------------------------EEEECCCcc---
Confidence 399999999887765 3678999999887643 222110000
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeC--CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC-c
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-A 183 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 183 (432)
.......-..+.+ +|||++++++.. ++.|.++|+.+++.......... ...+ |.+ .
T Consensus 132 --r~~~g~~P~~~a~--spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~----------------~~~~-P~g~~ 190 (386)
T 3sjl_D 132 --RFLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC----------------YHIF-PTAPD 190 (386)
T ss_dssp --CCCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----------------EEEE-EEETT
T ss_pred --ccccCCCCceEEE--cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc----------------ceee-cCCCc
Confidence 0000023456888 999999888864 68999999999885443322110 0001 111 1
Q ss_pred ceecceeeccceEEEEeecccccceeeEEee---cCCCCCee-EEEe-CCCCCEEEEEcCCeEEEEeCCCCC-ceeeEee
Q 014005 184 HGYHLEWTENMATKIANVGNSVHARCQKVYP---HAHDFNIN-SISN-NSDCETFVSADDLRINLWNLEISD-QCFNIVD 257 (432)
Q Consensus 184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~---~~~~~~i~-~~~~-~~~~~~l~~~~d~~i~lwd~~~~~-~~~~~~~ 257 (432)
.++..+. ||.+.+.++... ++...... ......+. ...| .++|+++....+|.+++.|..... .....+.
T Consensus 191 ~~~~~~~--DG~~~~v~~~~~--g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~ 266 (386)
T 3sjl_D 191 TFFMHCR--DGSLAKVAFGTE--GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVE 266 (386)
T ss_dssp EEEEEET--TSCEEEEECCSS--SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEE
T ss_pred eeEEECC--CCCEEEEECCCC--CeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeeccee
Confidence 1222222 666666666531 11111110 11112221 2345 467866665678999999997222 1222221
Q ss_pred c-CC--CCcCCCCcceEEEEEcCCCCcEEEEEeC----------CCeEEEEEccccccccccceeecccccccCCcccee
Q 014005 258 M-KP--SNMDDLTEVITSAEFHPIYCNLLAYSSS----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (432)
Q Consensus 258 ~-~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 324 (432)
+ .. ............++++|++ +.++.... .+.|.++|+.+++. ++.+..
T Consensus 267 ~~~~~~~~~g~~p~g~q~~a~~~~~-~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv----~~~i~v------------ 329 (386)
T 3sjl_D 267 ALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKTGER----LAKFEM------------ 329 (386)
T ss_dssp SSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCE----EEEEEE------------
T ss_pred ccccccccccccCCCcceeeECCCC-CeEEEEeccccccccCCCCCEEEEEECCCCeE----EEEEEC------------
Confidence 0 00 0000012233457789998 65555532 25799999999887 566655
Q ss_pred eeecceeEEEEcCCCC-EEEEe--eCCeEEEEec---CcceeEeecc
Q 014005 325 EIIASISDIKFANDGQ-HLLSR--DYMNLKVFRY---EPVMTLSFCG 365 (432)
Q Consensus 325 ~~~~~v~~~~~s~dg~-~l~s~--~~~~i~iwd~---~~~~~~~~~~ 365 (432)
...+.++++++|++ +|++. .++.|.++|. +.++++....
T Consensus 330 --g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~ 374 (386)
T 3sjl_D 330 --GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 374 (386)
T ss_dssp --EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred --CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC
Confidence 45788999999997 66553 3499999999 6666665543
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.18 E-value=2e-10 Score=104.20 Aligned_cols=187 Identities=9% Similarity=0.074 Sum_probs=121.6
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
.++.+++++...++++|+.+ .+++|+++..... +..... +.... ....+.
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~---------~~~~~~-------~~~~~-~~~~lp------------ 88 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDH---------ITSDST-------PLTFK-WEKEIP------------ 88 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHH---------HHSSSC-------CCCCS-EEEECT------------
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhh---------hccccc-------cccce-EEeeCC------------
Confidence 68999999999999999987 5677997653210 000000 00000 111233
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceee-eeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
. |+.++| |+.+|+++ .++.|++||+.+..... ...+. ..+..+.+.+.. ++.+..
T Consensus 89 ~-V~~l~f----d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~--------------~~v~~i~~~~p~--~av~~~-- 144 (388)
T 1xip_A 89 D-VIFVCF----HGDQVLVS-TRNALYSLDLEELSEFRTVTSFE--------------KPVFQLKNVNNT--LVILNS-- 144 (388)
T ss_dssp T-EEEEEE----ETTEEEEE-ESSEEEEEESSSTTCEEEEEECS--------------SCEEEEEECSSE--EEEEET--
T ss_pred C-eeEEEE----CCCEEEEE-cCCcEEEEEchhhhccCccceee--------------cceeeEEecCCC--EEEEEC--
Confidence 6 999999 68899998 88999999997654221 21221 234444443332 444444
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCce--eeEeecCCCCcC---CC
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC--FNIVDMKPSNMD---DL 266 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~--~~~~~~~~~~~~---~~ 266 (432)
+|.+.+||+.. ..... +...|.|++|+|+| ++.| .||++++|+.+ .... ...+. +|..+. +|
T Consensus 145 dG~L~v~dl~~---~~~~~-----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~-~~~~~~k~~I~-~Pp~~~~~~~~ 212 (388)
T 1xip_A 145 VNDLSALDLRT---KSTKQ-----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWR-NGEMEKQFEFS-LPSELEELPVE 212 (388)
T ss_dssp TSEEEEEETTT---CCEEE-----EEESEEEEEECSSE--EEEEETTSCEEEEEEE-TTEEEEEEEEC-CCHHHHTSCTT
T ss_pred CCCEEEEEccC---Ccccc-----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCC-Cccccccceec-CCcccccccCC
Confidence 99999999983 33322 23489999999999 5667 99999999988 4443 44442 222222 47
Q ss_pred CcceEEEEEcCCCCcEEEEEe
Q 014005 267 TEVITSAEFHPIYCNLLAYSS 287 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~ 287 (432)
...|.++.|.+++ .++++-.
T Consensus 213 ~~~V~sI~wl~~~-~flv~y~ 232 (388)
T 1xip_A 213 EYSPLSVTILSPQ-DFLAVFG 232 (388)
T ss_dssp TSEEEEEEESSSS-EEEEEEE
T ss_pred CeeEEEEEEecCC-eEEEEEc
Confidence 7889999999998 7777643
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.16 E-value=1.8e-08 Score=92.69 Aligned_cols=248 Identities=10% Similarity=0.053 Sum_probs=144.8
Q ss_pred CCCCEEEEecc-c----ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcce
Q 014005 42 KTGDYLAVGDR-G----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (432)
Q Consensus 42 p~g~~l~t~~~-d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v 116 (432)
|+++.+.+... + +.|.++|..+.+.+ .++..-. .+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv---------------------------~~I~vG~------------~P- 121 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRIL---------------------------GMTDGGF------------LP- 121 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEE---------------------------EEEEECS------------SC-
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEE---------------------------EEEECCC------------CC-
Confidence 56676555443 2 69999999887643 4444322 34
Q ss_pred eEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005 117 NRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (432)
Q Consensus 117 ~~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (432)
.+.+ +||+++++++. .++.|.++|..+.+........... ..........+.++|++++++
T Consensus 122 -gia~--SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~------r~~~g~~P~~~~~spDGk~ly 192 (426)
T 3c75_H 122 -HPVA--AEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP------RFLVGTYQWMNALTPDNKNLL 192 (426)
T ss_dssp -EEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC------CCCBSCCGGGSEECTTSSEEE
T ss_pred -ceEE--CCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc------ccccCCCcceEEEcCCCCEEE
Confidence 7889 99999888875 4678999999988754433221000 000012356789999999999
Q ss_pred cceeeccceEEEEeecccccceeeEEeecCCC------CCeeEEEeCCCCCEE---------------------------
Q 014005 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHD------FNINSISNNSDCETF--------------------------- 233 (432)
Q Consensus 187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l--------------------------- 233 (432)
......++.|.+.|+. +.+.+..+..+.. +.-.-+.++++|+.+
T Consensus 193 V~n~~~~~~VsVID~~---t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~ 269 (426)
T 3c75_H 193 FYQFSPAPAVGVVDLE---GKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINH 269 (426)
T ss_dssp EEECSSSCEEEEEETT---TTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSC
T ss_pred EEecCCCCeEEEEECC---CCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeE
Confidence 8875446789999988 4455544421110 000112233333333
Q ss_pred ----------EEE-cCCeEEEEeCCCCCce--eeEeecCCCCcCC---CCcceEEEEEcCCCCcEEEEEeC---------
Q 014005 234 ----------VSA-DDLRINLWNLEISDQC--FNIVDMKPSNMDD---LTEVITSAEFHPIYCNLLAYSSS--------- 288 (432)
Q Consensus 234 ----------~~~-~d~~i~lwd~~~~~~~--~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~--------- 288 (432)
+.. ..+.+.+.|.. .... ...+.+....... .......++++|++ +.+++...
T Consensus 270 ~~~~~dg~~~~~~s~~g~V~ViD~~-~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg-~rlyVa~~~~~~gthk~ 347 (426)
T 3c75_H 270 PAFSLRSGRLVWPTYTGKIFQADLT-AEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS-DRIYLLVDQRDEWKHKA 347 (426)
T ss_dssp CEECTTTCEEEEEBTTSEEEEEEEC-SSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG-TEEEEEEEECCTTCTTS
T ss_pred eeecCCCCEEEEEeCCCcEEEEecc-CCceEEeeeeeeccccccccccccCCceeeEEcCCC-CEEEEEecccccccccC
Confidence 322 33444444443 1110 0001000000000 01112236899998 55554432
Q ss_pred -CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC-EEEEee--CCeEEEEec---CcceeE
Q 014005 289 -RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD--YMNLKVFRY---EPVMTL 361 (432)
Q Consensus 289 -dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~s~~--~~~i~iwd~---~~~~~~ 361 (432)
++.|.++|+.+++. +..+.. ......+.|+|||+ ++++.. ++.|.++|+ +.++++
T Consensus 348 ~s~~VsVID~~T~kv----v~~I~v--------------g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 348 ASRFVVVLNAETGER----INKIEL--------------GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CEEEEEEEETTTCCE----EEEEEE--------------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCEEEEEECCCCeE----EEEEEC--------------CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 35799999999886 566655 34688999999999 777754 499999999 555555
No 211
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.16 E-value=7.7e-09 Score=90.34 Aligned_cols=192 Identities=12% Similarity=0.125 Sum_probs=129.3
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
.+.++.++|+|++|++ .++.|..||. +++.+ ..+..+. .
T Consensus 38 ~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~---------------------------W~~~~~~-----------~ 76 (276)
T 3no2_A 38 ECNSVAATKAGEILFS--YSKGAKMITR-DGREL---------------------------WNIAAPA-----------G 76 (276)
T ss_dssp CCCEEEECTTSCEEEE--CBSEEEEECT-TSCEE---------------------------EEEECCT-----------T
T ss_pred CCcCeEECCCCCEEEe--CCCCEEEECC-CCCEE---------------------------EEEcCCC-----------C
Confidence 5788999999998883 4678999998 55432 4555432 0
Q ss_pred cceeEEEEEEcCCCCEEEEEeC-CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 114 EKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
..+.++.+ .++|+.+++.+. ++.|..+|.. ++.........
T Consensus 77 ~~~~~~~~--~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~----------------------------------- 118 (276)
T 3no2_A 77 CEMQTARI--LPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFET----------------------------------- 118 (276)
T ss_dssp CEEEEEEE--CTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECC-----------------------------------
T ss_pred ccccccEE--CCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccC-----------------------------------
Confidence 45778888 899999998877 7777777753 33211111100
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceE
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (432)
. . ..+......+++.++|+++++. .++.|..||.+ ++.+..+. .. ..+.
T Consensus 119 --------------~-----~-~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~~w~~~-------~~-~~~~ 168 (276)
T 3no2_A 119 --------------G-----I-ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQLLNSVK-------LS-GTPF 168 (276)
T ss_dssp --------------S-----C-SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCEEEEEE-------CS-SCCC
T ss_pred --------------C-----C-CcccccccCceECCCCCEEEEecCCCEEEEECCC--CCEEEEEE-------CC-CCcc
Confidence 0 0 1112234456788999999998 89999999988 56666552 11 3455
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (432)
Q Consensus 272 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~ 346 (432)
++...+++ +++++++.+++|..+|..+|+. +..+..+ ..+.. ....+..+...++|..+++..
T Consensus 169 ~~~~~~~g-~~~v~~~~~~~v~~~d~~tG~~----~w~~~~~-~~~~~------~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 169 SSAFLDNG-DCLVACGDAHCFVQLNLESNRI----VRRVNAN-DIEGV------QLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEECTTS-CEEEECBTTSEEEEECTTTCCE----EEEEEGG-GSBSC------CCSEEEEEEECTTSCEEEEEE
T ss_pred ceeEcCCC-CEEEEeCCCCeEEEEeCcCCcE----EEEecCC-CCCCc------cccccccceEcCCCCEEEEec
Confidence 67888998 8898888888999999998886 4555431 10000 023478889999999888863
No 212
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.11 E-value=1.3e-08 Score=92.06 Aligned_cols=249 Identities=9% Similarity=0.069 Sum_probs=144.8
Q ss_pred CcEEEEEEcCCCCEEEEecc--cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 33 DIVSAIEFDKTGDYLAVGDR--GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~t~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
.....++++|+|+++++... ++.++||.+++++... -|... ....+|-
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~-------------------~p~~~--~~~~~~~--------- 66 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIP-------------------FPPQS--GNAIITF--------- 66 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEE-------------------SCCCC--SSCCCCC---------
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeec-------------------CCCcc--cCcccce---------
Confidence 47899999999999888542 3436777776432110 00000 0111233
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeC-----CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTN-----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 185 (432)
..+..+++ +++++++++-.. ++.|.+||+.+++......+.... .........+++++++..+
T Consensus 67 ---~~p~gv~~--d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~-------~~~~~~~~~v~vd~~~g~~ 134 (343)
T 2qe8_A 67 ---DTVLGIKS--DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI-------TLSNSFVNDLAVDLIHNFV 134 (343)
T ss_dssp ---SCEEEEEE--CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT-------SCTTCCCCEEEEETTTTEE
T ss_pred ---eEeeEEEE--cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh-------cccccccceEEEecCCCEE
Confidence 67899999 888876665543 578999999988744433332110 0011345677777654443
Q ss_pred ecceee--ccceEEEEeecccccceeeEEeecCC-----------------------------CCCeeEEEeCCCCCEEE
Q 014005 186 YHLEWT--ENMATKIANVGNSVHARCQKVYPHAH-----------------------------DFNINSISNNSDCETFV 234 (432)
Q Consensus 186 ~~~~~~--~~~~v~i~d~~~~~~~~~~~~~~~~~-----------------------------~~~i~~~~~~~~~~~l~ 234 (432)
+..... .++.|.+||+. .++..+.+ .+| ...++.++++|+++.|.
T Consensus 135 yvtd~~~~~~~~i~v~d~~---~g~~~r~~-~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly 210 (343)
T 2qe8_A 135 YISDPAPDDKAALIRVDLQ---TGLAARVL-QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLY 210 (343)
T ss_dssp EEEECCSGGGCEEEEEETT---TCCEEEEC-TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEE
T ss_pred EEEcCccCCCCeEEEEECC---CCCEEEEe-cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEE
Confidence 332211 26788999987 33333332 111 12368899999999888
Q ss_pred EE-cCC-eEEEEeCCC--CCce--eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccce
Q 014005 235 SA-DDL-RINLWNLEI--SDQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 308 (432)
Q Consensus 235 ~~-~d~-~i~lwd~~~--~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 308 (432)
.+ .++ .+..++... .... .+.. ......++......++++++| +++++...++.|.+||..+++. .
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~-----~ 282 (343)
T 2qe8_A 211 LSPMHSTSMYRIKSADLSNLQLTDAELG--SKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAY-----K 282 (343)
T ss_dssp EEESSCSEEEEEEHHHHTCTTCCHHHHH--TTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEE-----E
T ss_pred EEeCCCCeEEEEEHHHhcCCCCChhhhh--cceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCE-----E
Confidence 77 444 554444320 0000 0000 000001233346679999998 8998888899999999855553 2
Q ss_pred eecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005 309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (432)
Q Consensus 309 ~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~ 346 (432)
.+...+ ....+.+++|.++|+++++..
T Consensus 283 ~~~~~~-----------~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 283 LLVTDE-----------KLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EEEECG-----------GGSCEEEEEECTTSCEEEEEC
T ss_pred EEEECC-----------ceecCCeeEECCCCcEEEEeC
Confidence 222110 034688999999998877764
No 213
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.07 E-value=7.2e-07 Score=81.38 Aligned_cols=290 Identities=8% Similarity=-0.029 Sum_probs=159.1
Q ss_pred EEcCCCCEEEEecc--cc---eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 39 EFDKTGDYLAVGDR--GG---RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 39 ~fsp~g~~l~t~~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
...|+++++.+... .. +|.++|..+++.. .++..-.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~---------------------------~~i~~g~------------ 67 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL---------------------------GHVNGGF------------ 67 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEE---------------------------EEecCCC------------
Confidence 34578887766653 22 7899998876532 3333222
Q ss_pred cceeEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005 114 EKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 183 (432)
.+ .+.+ +||+++++++. .++.|.+||..+.+........... ..........+.++|+++
T Consensus 68 ~p--~i~~--spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~------~~~~g~~p~~~~~spDG~ 137 (373)
T 2mad_H 68 LP--NPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP------RFDVGPYSWMNANTPNNA 137 (373)
T ss_pred CC--CeEE--CCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcc------ccccCCCccceEECCCCC
Confidence 22 7889 99999998885 3678999999876643322221000 000002345789999999
Q ss_pred ceecceeeccceEEEEeecccccceeeEE-eecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecCC
Q 014005 184 HGYHLEWTENMATKIANVGNSVHARCQKV-YPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (432)
Q Consensus 184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~ 260 (432)
+++......++.|.++| . +++.+.. + .. .. ++.+.|+++ .+++. .||.+.++|. . +.........+
T Consensus 138 ~l~v~n~~~~~~v~viD-~---t~~~~~~~i-~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~-g~~~~~~~~~~ 206 (373)
T 2mad_H 138 DLLFFQFAAGPAVGLVV-Q---GGSSDDQLL-SS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-A-GGAAGAGLVGA 206 (373)
T ss_pred EEEEEecCCCCeEEEEE-C---CCCEEeEEc-CC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-C-CcEEEEEeccc
Confidence 99988653357899999 7 5566655 4 21 11 244555553 33444 8999999999 3 33332221101
Q ss_pred CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC
Q 014005 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (432)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~ 340 (432)
.. .+.........+.+++ ..++..+..+.+.+.|+.++... ....+......... . .........+.++||++
T Consensus 207 ~~-~~~~p~~~~~~~~~~~-~~~~~~~~~~~v~vid~~~~~~~--v~~~~~~~~~~~~~-~--~~~p~g~~~~~~s~d~~ 279 (373)
T 2mad_H 207 ML-TAAQNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGAT--NKAPIDALSGGRKA-D--TWRPGGWQQVAYLKSSD 279 (373)
T ss_pred cc-cCCcceeecceeEecC-CEEEEEcCCceEEEEeccCCcce--EeeeeeecCCcccc-c--ceecCceEeEEECCCCC
Confidence 00 1111112345677776 44444447889999999755321 01222110000000 0 00012344578999988
Q ss_pred EEEEee-----------CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceee-EEEEeecccceeeeecc
Q 014005 341 HLLSRD-----------YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCV-IYIITTLYLINLSALSA 405 (432)
Q Consensus 341 ~l~s~~-----------~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~i~~~~~ 405 (432)
.|.... .+.|.+.|+ +.++++..... +....+..+-. .++++...++.|.++|.
T Consensus 280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~-----------p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHD-----------VDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCC-----------cCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 766532 257999999 45566654331 22222222222 22333335899999995
Q ss_pred C
Q 014005 406 G 406 (432)
Q Consensus 406 ~ 406 (432)
.
T Consensus 349 ~ 349 (373)
T 2mad_H 349 G 349 (373)
T ss_pred C
Confidence 4
No 214
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.03 E-value=3.8e-08 Score=87.65 Aligned_cols=203 Identities=9% Similarity=0.041 Sum_probs=127.9
Q ss_pred CCcEEEEEEcCC-CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeee-ecCCccccccch
Q 014005 32 VDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYLKS 109 (432)
Q Consensus 32 ~~~V~~~~fsp~-g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~~~~~ 109 (432)
...+.++.++++ |+++++.. .+.|.+||.+ ++.. .+ ......
T Consensus 70 ~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~----------------------------~~~~~~~~~------ 113 (314)
T 1pjx_A 70 GGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFE----------------------------EIAKKDSEG------ 113 (314)
T ss_dssp ECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEE----------------------------ECCSBCTTS------
T ss_pred CCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEE----------------------------EEEeccCCC------
Confidence 357899999999 77555544 3478889987 4321 11 000000
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCC---------------CeEEEEEccCcceeeeeecCCCCccccccccccccccc
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTND---------------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d---------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 174 (432)
.....+.++++ +++|+++++...+ +.|..++.. ++...+.... ....
T Consensus 114 -~~~~~~~~i~~--d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~--------------~~~~ 175 (314)
T 1pjx_A 114 -RRMQGCNDCAF--DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF--------------QFPN 175 (314)
T ss_dssp -CBCBCCCEEEE--CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE--------------SSEE
T ss_pred -ccccCCcCEEE--CCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCC--------------CCcc
Confidence 00045788999 8899887777654 567777765 4433321110 2345
Q ss_pred cccCC----CCCcceecceeeccceEEEEeecccccce---eeEEeecCCC-CCeeEEEeCCCCCEEEEE-cCCeEEEEe
Q 014005 175 NEHNP----PSFAHGYHLEWTENMATKIANVGNSVHAR---CQKVYPHAHD-FNINSISNNSDCETFVSA-DDLRINLWN 245 (432)
Q Consensus 175 ~~~~~----~~~~~~~~~~~~~~~~v~i~d~~~~~~~~---~~~~~~~~~~-~~i~~~~~~~~~~~l~~~-~d~~i~lwd 245 (432)
.++++ +++..++.+.. .++.|.+|+........ ....+ ..+. ..+..++++++|+++++. .++.|..||
T Consensus 176 ~i~~~~~~d~dg~~l~v~~~-~~~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d 253 (314)
T 1pjx_A 176 GIAVRHMNDGRPYQLIVAET-PTKKLWSYDIKGPAKIENKKVWGHI-PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG 253 (314)
T ss_dssp EEEEEECTTSCEEEEEEEET-TTTEEEEEEEEETTEEEEEEEEEEC-CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred eEEEecccCCCCCEEEEEEC-CCCeEEEEECCCCCccccceEEEEC-CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEc
Confidence 56777 88865544421 16789999875211111 22222 2333 568889999999888877 789999999
Q ss_pred CCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCc-EEEEEeCCCeEEEEEccc
Q 014005 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQ 299 (432)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~i~iwd~~~ 299 (432)
.+ +++....+ ..+...+.+++|+|++ + ++++...++.|..|++..
T Consensus 254 ~~-~g~~~~~~-------~~~~~~~~~i~~~~dg-~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 254 PD-GGQPKMRI-------RCPFEKPSNLHFKPQT-KTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TT-CBSCSEEE-------ECSSSCEEEEEECTTS-SEEEEEETTTTEEEEEECSS
T ss_pred CC-CCcEeEEE-------eCCCCCceeEEECCCC-CEEEEEeCCCCeEEEEeCCC
Confidence 87 45544444 3344678999999999 7 555555678999999875
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.01 E-value=3.1e-07 Score=81.18 Aligned_cols=204 Identities=10% Similarity=0.038 Sum_probs=127.8
Q ss_pred ceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 115 KINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 115 ~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
--.+..| +++ +.++++...++.|..||..++..... .. . ..+..+++++++.+++. . +
T Consensus 14 ~~Egp~w--~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~---~-----------~~~~~i~~~~dG~l~v~-~---~ 72 (297)
T 3g4e_A 14 CGESPVW--EEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TM---D-----------APVSSVALRQSGGYVAT-I---G 72 (297)
T ss_dssp BEEEEEE--ETTTTEEEEEETTTTEEEEEETTTCCEEEE-EC---S-----------SCEEEEEEBTTSSEEEE-E---T
T ss_pred cccCCeE--ECCCCEEEEEECCCCEEEEEECCCCcEEEE-eC---C-----------CceEEEEECCCCCEEEE-E---C
Confidence 4457889 664 45566666789999999988764332 11 1 46778889999985544 2 5
Q ss_pred ceEEEEeecccccceeeEEeec---CCCCCeeEEEeCCCCCEEEEE-cC---------CeEEEEeCCCCCceeeEeecCC
Q 014005 194 MATKIANVGNSVHARCQKVYPH---AHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKP 260 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~-~d---------~~i~lwd~~~~~~~~~~~~~~~ 260 (432)
+.+.+||.. +++....... .....++.++++|+|+++++. .+ ..-.+|.++..+.....
T Consensus 73 ~~l~~~d~~---~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~----- 144 (297)
T 3g4e_A 73 TKFCALNWK---EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY----- 144 (297)
T ss_dssp TEEEEEETT---TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE-----
T ss_pred CeEEEEECC---CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE-----
Confidence 678888886 3333222211 123458899999999977765 32 23456655522332222
Q ss_pred CCcCCCCcceEEEEEcCCCCcEE-EEEeCCCeEEEEEc--ccccccc-ccceeecccccccCCccceeeeecceeEEEEc
Q 014005 261 SNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDM--RQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (432)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~iwd~--~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s 336 (432)
.......+.++|+|++ +.| ++.+.++.|.+||+ .++.... +....+..+ ......++++
T Consensus 145 ---~~~~~~pngi~~spdg-~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~-------------~~~p~g~~~d 207 (297)
T 3g4e_A 145 ---FDQVDISNGLDWSLDH-KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE-------------EQIPDGMCID 207 (297)
T ss_dssp ---EEEESBEEEEEECTTS-CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGG-------------GCEEEEEEEB
T ss_pred ---eeccccccceEEcCCC-CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCC-------------CCCCCeeEEC
Confidence 2223456899999999 655 55566789999997 4444210 001111111 2457789999
Q ss_pred CCCCEEEEeeC-CeEEEEec---CcceeEeec
Q 014005 337 NDGQHLLSRDY-MNLKVFRY---EPVMTLSFC 364 (432)
Q Consensus 337 ~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~ 364 (432)
++|++.++... +.|..||. +.+..+..+
T Consensus 208 ~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 208 AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp TTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred CCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 99987777644 88999998 455566554
No 216
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.00 E-value=4.9e-07 Score=81.75 Aligned_cols=290 Identities=9% Similarity=0.004 Sum_probs=163.9
Q ss_pred EEEcCCCCEEEEecc-----cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005 38 IEFDKTGDYLAVGDR-----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (432)
Q Consensus 38 ~~fsp~g~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 112 (432)
....|+++.+.+... ++.|.+.|..+.+.+ .++..-.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~---------------------------~~I~vG~----------- 79 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI---------------------------GMIDGGF----------- 79 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE---------------------------EEEEECS-----------
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE---------------------------EEEECCC-----------
Confidence 456799998877654 679999999887633 4444332
Q ss_pred hcceeEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005 113 EEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (432)
Q Consensus 113 ~~~v~~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (432)
.+ . +.+ +|||++++++. .++.|.+||..+.+........... ..........+.++|++
T Consensus 80 -~P-~-va~--spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~------r~~~g~~P~~~a~spDG 148 (386)
T 3sjl_D 80 -LP-N-PVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP------RFLVGTYPWMTSLTPDG 148 (386)
T ss_dssp -SC-E-EEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC------CCCBSCCGGGEEECTTS
T ss_pred -CC-c-EEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc------ccccCCCCceEEEcCCC
Confidence 33 3 888 99999887775 3678999999988754433221100 00001245678999999
Q ss_pred cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC
Q 014005 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (432)
Q Consensus 183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~ 261 (432)
++++......++.|.++|+. +.+.+..+.... . ...+....+.+++. .||++.+.++...+...... ..
T Consensus 149 k~lyVan~~~~~~VsVID~~---t~~vv~tI~v~g---~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~---~~ 218 (386)
T 3sjl_D 149 KTLLFYQFSPAPAVGVVDLE---GKAFKRMLDVPD---C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH---TE 218 (386)
T ss_dssp SEEEEEECSSSCEEEEEETT---TTEEEEEEECCS---E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE---CC
T ss_pred CEEEEEEcCCCCeEEEEECC---CCcEEEEEECCC---c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee---cc
Confidence 99988765346899999999 667777662211 1 12222233445444 78888888877323332211 00
Q ss_pred CcCCCCcce-EEEEEc-CCCCcEEEEEeCCCeEEEEEccccccccccceeec---ccccccCCccceeeeecceeEEEEc
Q 014005 262 NMDDLTEVI-TSAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR---DAAESHGSKSFFTEIIASISDIKFA 336 (432)
Q Consensus 262 ~~~~~~~~v-~~~~~~-p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~h~~~~~~~~~~~~~~~~v~~~~~s 336 (432)
.+..-...+ ....|. ++| ++++ .+.+|.|.+.|+.++.... ...+. .....+. ........++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v--~~~~~~~~~~~~~~g------~~p~g~q~~a~~ 288 (386)
T 3sjl_D 219 VFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKF--LPAVEALTEAERADG------WRPGGWQQVAYH 288 (386)
T ss_dssp CCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEE--CCCEESSCHHHHHTT------EEECSSSCEEEE
T ss_pred eeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCccee--ecceecccccccccc------ccCCCcceeeEC
Confidence 011111112 123664 676 5544 6668999999997654210 12121 0000000 011244467889
Q ss_pred CCCCEEEEee-----------CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeee
Q 014005 337 NDGQHLLSRD-----------YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSA 402 (432)
Q Consensus 337 ~dg~~l~s~~-----------~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 402 (432)
++++.|.... .+.|.+.|+ +.++.+..... . --+.+.......++++...++.|.+
T Consensus 289 ~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~-~---------~~lavs~D~~~~ly~tn~~~~~VsV 358 (386)
T 3sjl_D 289 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-I---------DSINVSQDEKPLLYALSTGDKTLYI 358 (386)
T ss_dssp TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE-E---------CEEEECSSSSCEEEEEETTTTEEEE
T ss_pred CCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCC-c---------ceEEECCCCCeEEEEEcCCCCeEEE
Confidence 9988776632 157899999 56666655432 0 0111112222123344456889999
Q ss_pred eccC
Q 014005 403 LSAG 406 (432)
Q Consensus 403 ~~~~ 406 (432)
+|..
T Consensus 359 iD~~ 362 (386)
T 3sjl_D 359 HDAE 362 (386)
T ss_dssp EETT
T ss_pred EECC
Confidence 9943
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.97 E-value=1.8e-07 Score=86.59 Aligned_cols=223 Identities=10% Similarity=0.074 Sum_probs=135.7
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
.....|+| +++++++++...++.|+.||..++.+..+.... .... +++++++..++.......
T Consensus 131 ~~P~~la~--d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~--------------~~~~-ia~~~~g~~l~~~d~~~~ 193 (409)
T 3hrp_A 131 KYMWGIAA--VGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF--------------KGGK-PAVTKDKQRVYSIGWEGT 193 (409)
T ss_dssp CCEEEEEE--CSTTEEEEEETTTTEEEEEETTTTEEEEEEETC--------------CBCB-CEECTTSSEEEEEBSSTT
T ss_pred CCceEEEE--eCCCCEEEEecCCCcEEEEECCCCEEEEeeccC--------------CCCc-eeEecCCCcEEEEecCCC
Confidence 45778999 889987777777899999999988765554331 2223 889999988777765222
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce--
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-- 270 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v-- 270 (432)
..+.+++.........+..+.......+.+++++|++..|..+ .++.|+.||.+ .+.. ..+... ...+....-
T Consensus 194 ~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~-~~~~-~~~~~~--~~~g~~~~~P~ 269 (409)
T 3hrp_A 194 HTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVK-TQEV-TLIKQL--ELSGSLGTNPG 269 (409)
T ss_dssp CEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETT-TCCE-EEEEEC--CCCSCCCCSSC
T ss_pred ceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECC-CCCE-EEEecc--cccCCCCCCcc
Confidence 2677777663222112211211145678899999955555557 88899999998 3332 222000 011222222
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcc--ceeeeecceeEEEEcCCCCEEEEee-C
Q 014005 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS--FFTEIIASISDIKFANDGQHLLSRD-Y 347 (432)
Q Consensus 271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~--~~~~~~~~v~~~~~s~dg~~l~s~~-~ 347 (432)
..++|+|++..++++-..++.|+.||... .. ..+.++...+.... ...........++++++|+++++-. .
T Consensus 270 ~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-~~-----~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~ 343 (409)
T 3hrp_A 270 PYLIYYFVDSNFYMSDQNLSSVYKITPDG-EC-----EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK 343 (409)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTTC-CE-----EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT
T ss_pred ccEEEeCCCCEEEEEeCCCCEEEEEecCC-CE-----EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC
Confidence 38999995427777777888999999763 32 33333210000000 0000124578999999999777755 4
Q ss_pred -CeEEEEec--CcceeEee
Q 014005 348 -MNLKVFRY--EPVMTLSF 363 (432)
Q Consensus 348 -~~i~iwd~--~~~~~~~~ 363 (432)
++|+.||+ ..+.++..
T Consensus 344 ~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 344 GYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp TCEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEECCCCEEEEEeC
Confidence 99999996 34444443
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.96 E-value=8.4e-08 Score=86.78 Aligned_cols=214 Identities=10% Similarity=-0.004 Sum_probs=117.5
Q ss_pred EEEEEEcCCCCEEEEEe----------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 118 RVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 118 ~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
.+.+ +||+++++++. .++.|.+||+.+++........... ..........++++|++++++.
T Consensus 69 ~i~~--spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~------~~~~g~~P~~ia~SpDGk~lyV 140 (368)
T 1mda_H 69 LAVA--GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP------RFSVGPRVHIIGNCASSACLLF 140 (368)
T ss_dssp EEEE--CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC------SCCBSCCTTSEEECTTSSCEEE
T ss_pred ceEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc------ccccCCCcceEEEcCCCCEEEE
Confidence 6888 99999988886 4789999999998854443321000 0000023567899999999998
Q ss_pred ceeeccceEEE--EeecccccceeeEEeecCCC------CCeeEEEeCCCCCEEE-------------------------
Q 014005 188 LEWTENMATKI--ANVGNSVHARCQKVYPHAHD------FNINSISNNSDCETFV------------------------- 234 (432)
Q Consensus 188 ~~~~~~~~v~i--~d~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~------------------------- 234 (432)
.....+..+.+ +|... ++.+..+.. +.-.-++++++++.++
T Consensus 141 an~~~~~~v~V~~iD~~t------v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~ 214 (368)
T 1mda_H 141 FLFGSSAAAGLSVPGASD------DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS 214 (368)
T ss_dssp EECSSSCEEEEEETTTEE------EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCS
T ss_pred EccCCCCeEEEEEEchhh------ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCC
Confidence 86543566777 88762 222211100 0000112222222222
Q ss_pred ------------EE-cCCeEEEEeCCCCC-ceeeEeecCCCC--cCC-CCcceEEEEEcCCCCcEEEEEeC---------
Q 014005 235 ------------SA-DDLRINLWNLEISD-QCFNIVDMKPSN--MDD-LTEVITSAEFHPIYCNLLAYSSS--------- 288 (432)
Q Consensus 235 ------------~~-~d~~i~lwd~~~~~-~~~~~~~~~~~~--~~~-~~~~v~~~~~~p~~~~~l~~~~~--------- 288 (432)
.. . +.+.+.|..... .....+.+.... ..+ .......++++|++ +.++.+..
T Consensus 215 ~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg-~~lyV~~~~~~~~~~~~ 292 (368)
T 1mda_H 215 QAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAA 292 (368)
T ss_dssp CCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSC
T ss_pred CccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCC-CEEEEEeccccCccccc
Confidence 11 2 344444443110 111111000000 000 00111226899998 55555432
Q ss_pred CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE-EEEee--CCeEEEEec---CcceeEe
Q 014005 289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRD--YMNLKVFRY---EPVMTLS 362 (432)
Q Consensus 289 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~-l~s~~--~~~i~iwd~---~~~~~~~ 362 (432)
++.+.++|+.+++. +..+.. ......++|+|||++ +++.. ++.|.++|+ +.++++.
T Consensus 293 ~~~~~ViD~~t~~v----v~~i~v--------------g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 293 AENTSSVTASVGQT----SGPISN--------------GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp EEEEEEEESSSCCE----EECCEE--------------EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred CCCEEEEECCCCeE----EEEEEC--------------CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 23566999999876 466655 346889999999984 44544 599999999 5556665
Q ss_pred ecc
Q 014005 363 FCG 365 (432)
Q Consensus 363 ~~~ 365 (432)
...
T Consensus 355 vg~ 357 (368)
T 1mda_H 355 LDK 357 (368)
T ss_dssp CCS
T ss_pred CCC
Confidence 443
No 219
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.91 E-value=1.1e-07 Score=94.49 Aligned_cols=206 Identities=11% Similarity=0.090 Sum_probs=126.2
Q ss_pred cceeEEEEEEcCCCCEEEEEe-----CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 114 EKINRVRWCAAPNGSMFILST-----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..+..++| ||||++++.+. ....|++||+.+++....... ......++|+ +++.++..
T Consensus 129 ~~l~~~~~--SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~--------------~~k~~~~~Ws-Dg~~l~y~ 191 (693)
T 3iuj_A 129 TALDQLSF--SRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK--------------DVKFSGISWL-GNEGFFYS 191 (693)
T ss_dssp CEEEEEEE--CTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE--------------EEESCCCEEE-TTTEEEEE
T ss_pred EEEEEEEE--CCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC--------------CceeccEEEe-CCCEEEEE
Confidence 56778899 99999988642 235799999999874332110 0124567899 88877766
Q ss_pred eeec-----------cceEEEEeecccccceeeEEee-cC-CCCCeeEEEeCCCCCEEEEE-c----CCeEEEEeCCCCC
Q 014005 189 EWTE-----------NMATKIANVGNSVHARCQKVYP-HA-HDFNINSISNNSDCETFVSA-D----DLRINLWNLEISD 250 (432)
Q Consensus 189 ~~~~-----------~~~v~i~d~~~~~~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~-~----d~~i~lwd~~~~~ 250 (432)
.... ...|.+|++.... ......+. .. +......+.++|||++++.. . ++.|+++|++...
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~-~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 192 SYDKPDGSELSARTDQHKVYFHRLGTAQ-EDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN 270 (693)
T ss_dssp ESSCCC-------CCCCEEEEEETTSCG-GGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred EecCcccccccccCCCcEEEEEECCCCc-ccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence 5421 2358888887431 22223331 22 44567889999999988754 2 2589999998433
Q ss_pred ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC---CeEEEEEccccccccccceeecccccccCCccceeeee
Q 014005 251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (432)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 327 (432)
.....+ ..+....... +++++..+++....+ +.|..+|+.++... ..+.+..| .
T Consensus 271 ~~~~~l-------~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~--~~~~l~~~-------------~ 327 (693)
T 3iuj_A 271 APLLTV-------QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA--HWRDLIPE-------------R 327 (693)
T ss_dssp CCCEEE-------ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG--GCEEEECC-------------C
T ss_pred CceEEE-------eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc--ccEEEecC-------------C
Confidence 233333 3344444444 666663555555543 57999998875421 02444443 3
Q ss_pred cceeEEEEcCCCCEEEEe--eC--CeEEEEec--CcceeEe
Q 014005 328 ASISDIKFANDGQHLLSR--DY--MNLKVFRY--EPVMTLS 362 (432)
Q Consensus 328 ~~v~~~~~s~dg~~l~s~--~~--~~i~iwd~--~~~~~~~ 362 (432)
..+. .|++++++|+.. .+ ..|++||+ .....+.
T Consensus 328 ~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~ 366 (693)
T 3iuj_A 328 QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVA 366 (693)
T ss_dssp SSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEEC
T ss_pred CCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEee
Confidence 3343 899999988764 33 37899998 3334443
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.84 E-value=5.4e-07 Score=79.92 Aligned_cols=204 Identities=10% Similarity=-0.007 Sum_probs=124.6
Q ss_pred cceeEEEEEEcCCCC-EEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
.......| +++++ ++++...++.|..|+.. ++...+... . ..+..+++++++..++....
T Consensus 45 ~~~egp~~--~~~g~~l~~~d~~~~~i~~~~~~-g~~~~~~~~---~-----------~~~~gl~~d~dG~l~v~~~~-- 105 (305)
T 3dr2_A 45 TWSEGPAW--WEAQRTLVWSDLVGRRVLGWRED-GTVDVLLDA---T-----------AFTNGNAVDAQQRLVHCEHG-- 105 (305)
T ss_dssp SSEEEEEE--EGGGTEEEEEETTTTEEEEEETT-SCEEEEEES---C-----------SCEEEEEECTTSCEEEEETT--
T ss_pred cCccCCeE--eCCCCEEEEEECCCCEEEEEeCC-CCEEEEeCC---C-----------CccceeeECCCCCEEEEECC--
Confidence 45678899 78888 56666778999999984 443332221 1 45677889999886655333
Q ss_pred cceEEEEeecccccceeeE-EeecCCCCCeeEEEeCCCCCEEEE----E-c-------------CCeEEEEeCCCCCcee
Q 014005 193 NMATKIANVGNSVHARCQK-VYPHAHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISDQCF 253 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~----~-~-------------d~~i~lwd~~~~~~~~ 253 (432)
++.|..|+... ....+. .........++.++++++|++.++ | . .+.|..+|.+ +++.
T Consensus 106 ~~~v~~~~~~g--~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~-~g~~- 181 (305)
T 3dr2_A 106 RRAITRSDADG--QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD-GSPL- 181 (305)
T ss_dssp TTEEEEECTTS--CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS-SCCC-
T ss_pred CCEEEEECCCC--CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC-CCcE-
Confidence 46788887642 111111 110111235778999999998886 3 2 2456667665 2332
Q ss_pred eEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC------CeEEEEEccccccccccceeecccccccCCccceeeee
Q 014005 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (432)
Q Consensus 254 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 327 (432)
..+ . .....+.++|+|++ +.|+.+... +.|.+||+..+.+.. ...+..- ..
T Consensus 182 ~~~-------~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~--~~~~~~~------------~~ 238 (305)
T 3dr2_A 182 QRM-------A-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHD--RRHFASV------------PD 238 (305)
T ss_dssp EEE-------E-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEE--EEEEECC------------SS
T ss_pred EEE-------e-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccC--CeEEEEC------------CC
Confidence 222 1 22346789999999 777776655 789999987543100 1122110 02
Q ss_pred cceeEEEEcCCCCEEEEeeCCeEEEEec--CcceeEeec
Q 014005 328 ASISDIKFANDGQHLLSRDYMNLKVFRY--EPVMTLSFC 364 (432)
Q Consensus 328 ~~v~~~~~s~dg~~l~s~~~~~i~iwd~--~~~~~~~~~ 364 (432)
.....++++++|++.++. .+.|.+||. +.+..+..+
T Consensus 239 ~~pdgi~~d~~G~lwv~~-~~gv~~~~~~g~~~~~~~~~ 276 (305)
T 3dr2_A 239 GLPDGFCVDRGGWLWSSS-GTGVCVFDSDGQLLGHIPTP 276 (305)
T ss_dssp SCCCSEEECTTSCEEECC-SSEEEEECTTSCEEEEEECS
T ss_pred CCCCeEEECCCCCEEEec-CCcEEEECCCCCEEEEEECC
Confidence 345678999999965554 456999998 555555443
No 221
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.84 E-value=9.8e-07 Score=80.49 Aligned_cols=208 Identities=10% Similarity=0.090 Sum_probs=121.9
Q ss_pred eeEEEEEEcCCCCEEEEEeCC------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 116 INRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 116 v~~l~~~~s~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
-..+.. .|+| .++++..+ |.|.+.|.++.++.........+ ..--..+.|+|+.+.+++..
T Consensus 140 Ph~~~~--~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~----------~~~~Yd~~~~p~~~~mvsS~ 206 (462)
T 2ece_A 140 LHTVHC--GPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGD----------QYLAYDFWWNLPNEVLVSSE 206 (462)
T ss_dssp EEEEEE--CSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTT----------CCCCCCEEEETTTTEEEECB
T ss_pred ccceeE--CCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCC----------ccccceEEECCCCCEEEEcc
Confidence 344566 7899 77776555 78999999988755443322111 02233466688888777774
Q ss_pred ee-----------------ccceEEEEeecccccceeeEEeecC-CCCCeeEEEe--CCCCCEEEEE-c------CCeEE
Q 014005 190 WT-----------------ENMATKIANVGNSVHARCQKVYPHA-HDFNINSISN--NSDCETFVSA-D------DLRIN 242 (432)
Q Consensus 190 ~~-----------------~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~--~~~~~~l~~~-~------d~~i~ 242 (432)
.. .+..|.+||+. +.+.++++..+ .......+.| +|+++++.++ . +++|.
T Consensus 207 wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~---~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~ 283 (462)
T 2ece_A 207 WAVPNTIEDGLKLEHLKDRYGNRIHFWDLR---KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIW 283 (462)
T ss_dssp CCCHHHHTTCCCTTTHHHHSCCEEEEEETT---TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEE
T ss_pred CcCccccccccchhhhhhccCCEEEEEECC---CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEE
Confidence 21 15799999998 55666666333 2234455655 9999987766 5 45787
Q ss_pred EEeCCCCCc--eeeEeecCCCCcCC-----------CCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccce
Q 014005 243 LWNLEISDQ--CFNIVDMKPSNMDD-----------LTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSAR 308 (432)
Q Consensus 243 lwd~~~~~~--~~~~~~~~~~~~~~-----------~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 308 (432)
+|..+ .+. ..+.+++......+ .......+.++||+ ++|.++. ..+.|.+||+..... .+.+.
T Consensus 284 v~~~d-~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG-rfLYVSnrg~d~VavfdV~d~~~-~~lv~ 360 (462)
T 2ece_A 284 LWFYE-DGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD-KFLYLSLWGIGEVRQYDISNPFK-PVLTG 360 (462)
T ss_dssp EEEEE-TTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS-CEEEEEETTTTEEEEEECSSTTS-CEEEE
T ss_pred EEEec-CCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC-CEEEEEeCCCCEEEEEEecCCCC-cEEEE
Confidence 77766 232 12222222211111 12457889999999 7666665 578999999863321 11122
Q ss_pred eeccc-c----cccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005 309 ILRDA-A----ESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (432)
Q Consensus 309 ~~~~h-~----~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~ 346 (432)
.+... . ..+... .....-..++++|||++|..++
T Consensus 361 ~I~tGG~~~~~~~~~G~----~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 361 KVKLGGIFHRADHPAGH----KLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEECBTTTTCBCCTTSC----CCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEeCCeeccccccccc----cCCCCCCEEEEcCCCCEEEEEc
Confidence 22210 0 000000 0012357899999999998865
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.80 E-value=1.8e-06 Score=77.35 Aligned_cols=190 Identities=14% Similarity=0.055 Sum_probs=116.7
Q ss_pred CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
....+.++.++|+|+++++. .+ .|.+||.++++.. .+......
T Consensus 88 ~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~----------------------------~~~~~~~~------- 130 (326)
T 2ghs_A 88 LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLT----------------------------LHAELESD------- 130 (326)
T ss_dssp CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEE----------------------------EEECSSTT-------
T ss_pred CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEE----------------------------EEeeCCCC-------
Confidence 35679999999999977764 33 4889998776421 11111000
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeC------CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTN------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (432)
.....+.++.+ +++|+++++... .+.|..++ +++...+... ......++|++++..
T Consensus 131 ~~~~~~~~i~~--d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~--------------~~~~~~i~~s~dg~~ 192 (326)
T 2ghs_A 131 LPGNRSNDGRM--HPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD--------------ISIPNSICFSPDGTT 192 (326)
T ss_dssp CTTEEEEEEEE--CTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE--------------ESSEEEEEECTTSCE
T ss_pred CCCCCCCCEEE--CCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC--------------CcccCCeEEcCCCCE
Confidence 00046889999 899987765542 23455555 4443332211 023457889999986
Q ss_pred eecceeeccceEEEEeec--cc-cc--ceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeec
Q 014005 185 GYHLEWTENMATKIANVG--NS-VH--ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM 258 (432)
Q Consensus 185 ~~~~~~~~~~~v~i~d~~--~~-~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~ 258 (432)
++.... .++.|.+|++. .. .. .+....+ ......+..++++++|++.++. .++.|..||.. ++.+..+
T Consensus 193 lyv~~~-~~~~I~~~d~~~~~Gl~~~~~~~~~~~-~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~--g~~~~~i-- 266 (326)
T 2ghs_A 193 GYFVDT-KVNRLMRVPLDARTGLPTGKAEVFIDS-TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD--GNHIARY-- 266 (326)
T ss_dssp EEEEET-TTCEEEEEEBCTTTCCBSSCCEEEEEC-TTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT--CCEEEEE--
T ss_pred EEEEEC-CCCEEEEEEcccccCCcccCceEEEEC-CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC--CCEEEEE--
Confidence 655432 15789999975 21 11 1122222 2344567889999999877777 67899999985 4455544
Q ss_pred CCCCcCCCCcceEEEEEc-CCCCcEEEEEe
Q 014005 259 KPSNMDDLTEVITSAEFH-PIYCNLLAYSS 287 (432)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~-p~~~~~l~~~~ 287 (432)
..+...+++++|+ |++ ..|+.++
T Consensus 267 -----~~~~~~~~~~af~g~d~-~~L~vt~ 290 (326)
T 2ghs_A 267 -----EVPGKQTTCPAFIGPDA-SRLLVTS 290 (326)
T ss_dssp -----ECSCSBEEEEEEESTTS-CEEEEEE
T ss_pred -----ECCCCCcEEEEEecCCC-CEEEEEe
Confidence 3344569999998 887 5554444
No 223
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.80 E-value=3.3e-07 Score=84.38 Aligned_cols=222 Identities=10% Similarity=0.060 Sum_probs=125.2
Q ss_pred EEEEcCCCCEEEEec----------ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecC-Ccccc
Q 014005 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD 105 (432)
Q Consensus 37 ~~~fsp~g~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h-~~~~~ 105 (432)
.+.++|+|++|.++. .++.|.++|..+.+.. .++.-- .+.+.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv---------------------------~~I~v~g~~r~~ 174 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAPRFL 174 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE---------------------------EEEEETTCCCCC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE---------------------------EEEECCCccccc
Confidence 799999999888775 3678999999887643 222110 00000
Q ss_pred ccchhhhhcceeEEEEEEcCCCCEEEEEeC--CCeEEEEEccCcceeeeeecCCCCccccc-----ccccccccc-----
Q 014005 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSE-----NTLLAEKNF----- 173 (432)
Q Consensus 106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i----- 173 (432)
.......+.+ +|||++++++.. ++.|.+.|+.+++............+... .....++.+
T Consensus 175 ------~g~~P~~~~~--spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~ 246 (426)
T 3c75_H 175 ------VGTYQWMNAL--TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDF 246 (426)
T ss_dssp ------BSCCGGGSEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEEC
T ss_pred ------cCCCcceEEE--cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEEC
Confidence 0012345677 889988888764 57899999988764332222100000000 000000000
Q ss_pred ---------------------ccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecC---------CCCCeeE
Q 014005 174 ---------------------MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHA---------HDFNINS 223 (432)
Q Consensus 174 ---------------------~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~---------~~~~i~~ 223 (432)
..+.+.+++..++.... .+.+.+.|.... .......+... .......
T Consensus 247 ~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~--~g~V~ViD~~~~-~~~v~~~~~~~~~~~i~~g~~p~g~~~ 323 (426)
T 3c75_H 247 ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY--TGKIFQADLTAE-GATFRAPIEALTEAERADDWRPGGWQQ 323 (426)
T ss_dssp CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT--TSEEEEEEECSS-CEEECCCEESSCTTTGGGTEEECSSSC
T ss_pred CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC--CCcEEEEeccCC-ceEEeeeeeeccccccccccccCCcee
Confidence 01122333333332222 456777776421 10111111000 0112234
Q ss_pred EEeCCCCCEEEEE-c----------CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCc-EEEEEe-CCC
Q 014005 224 ISNNSDCETFVSA-D----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSS-SRG 290 (432)
Q Consensus 224 ~~~~~~~~~l~~~-~----------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~-~dg 290 (432)
++++|+++.+.+. . ++.|.++|.. +.+.+..+.+ .....++.|+|++ + +++++. .++
T Consensus 324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~-T~kvv~~I~v--------g~~P~gia~spDg-~~~lyv~n~~s~ 393 (426)
T 3c75_H 324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE-TGERINKIEL--------GHEIDSINVSQDA-EPLLYALSAGTQ 393 (426)
T ss_dssp EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT-TCCEEEEEEE--------EEEECEEEECCSS-SCEEEEEETTTT
T ss_pred eEEcCCCCEEEEEecccccccccCCCCEEEEEECC-CCeEEEEEEC--------CCCcCeEEEccCC-CEEEEEEcCCCC
Confidence 7899998877766 3 2479999999 6676666521 1247899999999 6 777777 599
Q ss_pred eEEEEEccccccccccceee
Q 014005 291 FVRLVDMRQSALCDHSARIL 310 (432)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~~ 310 (432)
.|.++|+.+++. ++.+
T Consensus 394 ~VsVID~~t~kv----v~tI 409 (426)
T 3c75_H 394 TLHIYDAATGEE----LRSV 409 (426)
T ss_dssp EEEEEETTTCCE----EEEE
T ss_pred eEEEEECCCCCE----EEEe
Confidence 999999999886 4554
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.77 E-value=1.7e-08 Score=92.22 Aligned_cols=184 Identities=10% Similarity=0.000 Sum_probs=93.6
Q ss_pred CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEE
Q 014005 43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122 (432)
Q Consensus 43 ~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~ 122 (432)
++..+++++.||.|..||..+++.. ..+.. . .+.+..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~---------------------------W~~~~-~-------------~~~s~p~- 45 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIK---------------------------WTLKE-D-------------PVLQVPT- 45 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEE---------------------------EEEEC-C-------------CSCCCC--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE---------------------------EEecC-C-------------Cceecce-
Confidence 5778999999999999999988743 33332 1 1222223
Q ss_pred EcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccccc-ccCCCCCcceecceeeccceEEEEee
Q 014005 123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN-EHNPPSFAHGYHLEWTENMATKIANV 201 (432)
Q Consensus 123 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~v~i~d~ 201 (432)
..++..+++++.|+.|+.||..+++........ . ...+.. .... .+..++.++. ++.+..||.
T Consensus 46 -~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~--~----------~~~~~~sp~~~-~~~~v~~g~~--dg~v~a~D~ 109 (369)
T 2hz6_A 46 -HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT--I----------PELVQASPCRS-SDGILYMGKK--QDIWYVIDL 109 (369)
T ss_dssp -----CCEEECTTTCCEEEC-----CCSEECSCC--H----------HHHHTTCSCC------CCCCEE--EEEEEEECC
T ss_pred -EcCCCEEEEeCCCCEEEEEECCCCceeeeeecc--C----------ccccccCceEe-cCCEEEEEeC--CCEEEEEEC
Confidence 356767888889999999999887643221111 1 011111 1111 3445666666 889999999
Q ss_pred cccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCC-
Q 014005 202 GNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY- 279 (432)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~- 279 (432)
. +++.+..+ ..+. ...++|++..++++ .|+.|+.||.+ +++....+.. .. .....++++.
T Consensus 110 ~---tG~~~w~~-~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~-tG~~~W~~~~-----~~----~~~~~~~~~~~ 171 (369)
T 2hz6_A 110 L---TGEKQQTL-SSAF----ADSLSPSTSLLYLGRTEYTITMYDTK-TRELRWNATY-----FD----YAASLPEDDVD 171 (369)
T ss_dssp C------------------------------EEEEEEEEEEECCCSS-SSSCCCEEEE-----EE----ECCBCCCCCTT
T ss_pred C---CCcEEEEe-cCCC----cccccccCCEEEEEecCCEEEEEECC-CCCEEEeEec-----cc----ccCccccCCcc
Confidence 8 66666655 2222 23456677888888 89999999998 5554433310 11 1122233321
Q ss_pred -CcEEEEEeCCCeEEEEEcccccc
Q 014005 280 -CNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 280 -~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
...+++++.||.|..||.++|+.
T Consensus 172 ~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 172 YKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp CCCCEEEEETSCEEEEECTTTCCE
T ss_pred ccceEEEECCCCEEEEEECCCCcE
Confidence 03466688999999999999886
No 225
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.75 E-value=6.3e-07 Score=81.05 Aligned_cols=76 Identities=4% Similarity=-0.129 Sum_probs=56.8
Q ss_pred EEeCCCCCEEEEE-c-C--------CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe-CCCeE
Q 014005 224 ISNNSDCETFVSA-D-D--------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFV 292 (432)
Q Consensus 224 ~~~~~~~~~l~~~-~-d--------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i 292 (432)
++++|+++.+.++ . + +.+.++|+. +.+.+..+ .. ......++|+|++..++++.. .++.|
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~-t~~vv~~i-------~v-g~~p~gi~~s~Dg~~l~va~~~~~~~V 339 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS-VGQTSGPI-------SN-GHDSDAIIAAQDGASDNYANSAGTEVL 339 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS-SCCEEECC-------EE-EEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECC-CCeEEEEE-------EC-CCCcceEEECCCCCEEEEEccCCCCeE
Confidence 7899999888876 5 3 367799999 56665544 21 125889999999944677777 59999
Q ss_pred EEEEccccccccccceeecc
Q 014005 293 RLVDMRQSALCDHSARILRD 312 (432)
Q Consensus 293 ~iwd~~~~~~~~~~~~~~~~ 312 (432)
.++|+.+++. ++.+..
T Consensus 340 sVID~~t~kv----v~~I~v 355 (368)
T 1mda_H 340 DIYDAASDQD----QSSVEL 355 (368)
T ss_dssp EEEESSSCEE----EEECCC
T ss_pred EEEECCCCcE----EEEEEC
Confidence 9999999886 566655
No 226
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.70 E-value=3.5e-06 Score=72.04 Aligned_cols=204 Identities=10% Similarity=0.062 Sum_probs=125.7
Q ss_pred eeEEEEEEcCCCCEEEEEeC--CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 116 INRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 116 v~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
...+.| ++++.++++.+. ++.|.+.|+.+++......+..+. ....+++ ++..++.... .+
T Consensus 23 ~~Gl~~--~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~------------fgeGi~~--~g~~lyv~t~-~~ 85 (266)
T 2iwa_A 23 TQGLVY--AENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY------------FGEGLTL--LNEKLYQVVW-LK 85 (266)
T ss_dssp EEEEEE--CSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC------------CEEEEEE--ETTEEEEEET-TC
T ss_pred cccEEE--eCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc------------ceEEEEE--eCCEEEEEEe-cC
Confidence 578999 888755555543 589999999999865543332211 0112222 2334444332 27
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (432)
+.+.++|.. +.+.+..+..+ ... ...++++++.++++ .++.|.++|.+ +.+....+.+... ...-..++.
T Consensus 86 ~~v~viD~~---t~~v~~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~-t~~v~~~I~Vg~~--~~p~~~~ne 156 (266)
T 2iwa_A 86 NIGFIYDRR---TLSNIKNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDPH-TFKLIKKHNVKYN--GHRVIRLNE 156 (266)
T ss_dssp SEEEEEETT---TTEEEEEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECTT-TCCEEEEEECEET--TEECCCEEE
T ss_pred CEEEEEECC---CCcEEEEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEECC-CCcEEEEEEECCC--Cccccccee
Confidence 789999988 66777777333 112 23355678888888 88899999998 5555555522110 011124678
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccccc----CCccceeeeecceeEEEEcCCCCEEE-EeeC
Q 014005 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH----GSKSFFTEIIASISDIKFANDGQHLL-SRDY 347 (432)
Q Consensus 273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~----~~~~~~~~~~~~v~~~~~s~dg~~l~-s~~~ 347 (432)
+.|. ++ .+.+....++.|.+.|..+++. +..+.-....+ ... ......+.++|+|+++.|. ++..
T Consensus 157 le~~-dg-~lyvn~~~~~~V~vID~~tg~V----~~~I~~~g~~~~~~~~~~----~~~~v~nGIa~~~~~~~lfVTgk~ 226 (266)
T 2iwa_A 157 LEYI-NG-EVWANIWQTDCIARISAKDGTL----LGWILLPNLRKKLIDEGF----RDIDVLNGIAWDQENKRIFVTGKL 226 (266)
T ss_dssp EEEE-TT-EEEEEETTSSEEEEEETTTCCE----EEEEECHHHHHHHHHTTC----TTCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEE-CC-EEEEecCCCCeEEEEECCCCcE----EEEEECCCcccccccccc----cccCceEEEEEcCCCCEEEEECCC
Confidence 8888 66 7766666788999999999886 34443200000 000 0013568999999986555 5544
Q ss_pred -CeEEEEec
Q 014005 348 -MNLKVFRY 355 (432)
Q Consensus 348 -~~i~iwd~ 355 (432)
+.+..-++
T Consensus 227 ~~~v~~i~l 235 (266)
T 2iwa_A 227 WPKLFEIKL 235 (266)
T ss_dssp CSEEEEEEE
T ss_pred CCeEEEEEE
Confidence 88888888
No 227
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.70 E-value=5.2e-07 Score=85.24 Aligned_cols=240 Identities=10% Similarity=0.023 Sum_probs=147.0
Q ss_pred CCCCEEEEecc-cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeec-CCccccccchhhhhcceeEE
Q 014005 42 KTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEIEEKINRV 119 (432)
Q Consensus 42 p~g~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-h~~~~~~~~~~~~~~~v~~l 119 (432)
+||++|..... ++.|.+.|+++.+.. ..+.- .. .....+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~---------------------------~ii~ip~g------------~~phg~ 139 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCD---------------------------AILEIPNA------------KGIHGL 139 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEE---------------------------EEEECSSC------------CSEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEe---------------------------eEEeCCCC------------CCCcce
Confidence 47888776554 557999999886532 21211 11 345667
Q ss_pred EEEEc-CCCCEEEEEe------------------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC
Q 014005 120 RWCAA-PNGSMFILST------------------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180 (432)
Q Consensus 120 ~~~~s-~~~~~l~s~~------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 180 (432)
++. + |++.+++.++ .++.+.+.|..+.+........ +....++.++
T Consensus 140 ~~~-~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vg--------------g~pd~~~~sp 204 (595)
T 1fwx_A 140 RPQ-KWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS--------------GNLDNCDADY 204 (595)
T ss_dssp EEC-CSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEES--------------SCCCCEEECS
T ss_pred eee-ecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeC--------------CCccceEECC
Confidence 763 3 7888888884 2457889999887644333322 1234455666
Q ss_pred CCcceecceeec------------------------------------cceEEEEeeccccccee-eEEeecCCCCCeeE
Q 014005 181 SFAHGYHLEWTE------------------------------------NMATKIANVGNSVHARC-QKVYPHAHDFNINS 223 (432)
Q Consensus 181 ~~~~~~~~~~~~------------------------------------~~~v~i~d~~~~~~~~~-~~~~~~~~~~~i~~ 223 (432)
++++++..+..+ -+.|.+.|.... .++. +..++. .....+
T Consensus 205 dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~-~~~~~~~~Ipv--g~~PhG 281 (595)
T 1fwx_A 205 EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKE-ASSLFTRYIPI--ANNPHG 281 (595)
T ss_dssp SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG-GCCSSEEEEEE--ESSCCC
T ss_pred CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCccc-CCceeEEEEec--CCCceE
Confidence 666666555321 124677777631 0222 333311 235678
Q ss_pred EEeCCCCCEEEEE--cCCeEEEEeCCCCCc-----------eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC
Q 014005 224 ISNNSDCETFVSA--DDLRINLWNLEISDQ-----------CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290 (432)
Q Consensus 224 ~~~~~~~~~l~~~--~d~~i~lwd~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 290 (432)
+.++|||++++++ .+.+|.++|++.... .... ..-......++|+|+| ....+.-.|+
T Consensus 282 v~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~--------v~vG~gP~h~aF~~dG-~aY~t~~lds 352 (595)
T 1fwx_A 282 CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE--------PELGLGPLHTAFDGRG-NAYTSLFLDS 352 (595)
T ss_dssp EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC--------CBCCSCEEEEEECTTS-EEEEEETTTT
T ss_pred EEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE--------cCCCCCcceEEECCCC-eEEEEEecCC
Confidence 9999999988876 799999999983210 1111 1223458899999999 8777888999
Q ss_pred eEEEEEccccc------cccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC---CeE-----------
Q 014005 291 FVRLVDMRQSA------LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---MNL----------- 350 (432)
Q Consensus 291 ~i~iwd~~~~~------~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~---~~i----------- 350 (432)
.|.+||+.++. .....+..+..|. -++|...-.++.++|||++|+++.. .++
T Consensus 353 qV~kwdi~~a~~~~~g~~~~~vi~kidV~y--------qpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ 424 (595)
T 1fwx_A 353 QVVKWNIEDAIRAYAGEKVDPIKDKLDVHY--------QPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPEND 424 (595)
T ss_dssp EEEEEEHHHHHHHHHTCSCCCEEEEEECSS--------CEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEE
T ss_pred cEEEEEhhHhhhhhcccccceeEEEeeccc--------ccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcc
Confidence 99999998621 1112245554430 0112233344567899999998532 455
Q ss_pred EEEec
Q 014005 351 KVFRY 355 (432)
Q Consensus 351 ~iwd~ 355 (432)
.++|+
T Consensus 425 ql~di 429 (595)
T 1fwx_A 425 QLIDI 429 (595)
T ss_dssp EEEEC
T ss_pred eEEEc
Confidence 88998
No 228
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.69 E-value=1.8e-08 Score=92.10 Aligned_cols=177 Identities=8% Similarity=-0.057 Sum_probs=89.2
Q ss_pred CCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeeccc
Q 014005 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (432)
Q Consensus 125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~ 204 (432)
-++..+++++.|+.|..||..+++....... +.+....+..++..++.++. ++.+..||..
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---------------~~~~s~p~~~~g~~~v~~s~--dg~l~a~d~~-- 67 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE---------------DPVLQVPTHVEEPAFLPDPN--DGSLYTLGSK-- 67 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTCCEEEEEEC---------------CCSCCCC-----CCEEECTT--TCCEEEC-----
T ss_pred eeCCEEEEEcCCCEEEEEECCCCCEEEEecC---------------CCceecceEcCCCEEEEeCC--CCEEEEEECC--
Confidence 3577899999999999999999885433222 12333334455555555544 8999999987
Q ss_pred ccceeeEEeecCCCC-CeeE-EEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCc
Q 014005 205 VHARCQKVYPHAHDF-NINS-ISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 281 (432)
Q Consensus 205 ~~~~~~~~~~~~~~~-~i~~-~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 281 (432)
+++.+..+ ..+.. .+.+ ..+. .+..++++ .|+.++.||.+ +++....+ ..+. ...++|++ .
T Consensus 68 -tG~~~w~~-~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~-tG~~~w~~-------~~~~----~~~~~p~~-~ 131 (369)
T 2hz6_A 68 -NNEGLTKL-PFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLL-TGEKQQTL-------SSAF----ADSLSPST-S 131 (369)
T ss_dssp ---CCSEEC-SCCHHHHHTTCSCC------CCCCEEEEEEEEECCC----------------------------------
T ss_pred -CCceeeee-eccCccccccCceEe-cCCEEEEEeCCCEEEEEECC-CCcEEEEe-------cCCC----cccccccC-C
Confidence 44444443 21111 1111 1111 34456667 89999999999 56655443 2221 23456777 7
Q ss_pred EEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC----CCEEEEeeCCeEEEEec
Q 014005 282 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND----GQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 282 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d----g~~l~s~~~~~i~iwd~ 355 (432)
.+++++.|+.|+.||.++|+.. ..+..+ ......++++ +..++.+.++.++.||.
T Consensus 132 ~v~~~~~dg~v~a~d~~tG~~~----W~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~ 190 (369)
T 2hz6_A 132 LLYLGRTEYTITMYDTKTRELR----WNATYF---------------DYAASLPEDDVDYKMSHFVSNGDGLVVTVDS 190 (369)
T ss_dssp -EEEEEEEEEEECCCSSSSSCC----CEEEEE---------------EECCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred EEEEEecCCEEEEEECCCCCEE----EeEecc---------------cccCccccCCccccceEEEECCCCEEEEEEC
Confidence 8888999999999999998863 333321 1122333333 44444445588999988
No 229
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.68 E-value=3.8e-05 Score=66.42 Aligned_cols=195 Identities=8% Similarity=0.013 Sum_probs=114.8
Q ss_pred cceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 114 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
.....++| ++++..|+.+ ...+.|..+++.++....+.... . .....+++++++..++.... .
T Consensus 36 ~~~~gi~~--d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~--~-----------~~p~~ia~d~~~~~lyv~d~-~ 99 (267)
T 1npe_A 36 KVIIGLAF--DCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD--L-----------GSPEGIALDHLGRTIFWTDS-Q 99 (267)
T ss_dssp EEEEEEEE--ETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT--C-----------CCEEEEEEETTTTEEEEEET-T
T ss_pred CcEEEEEE--ecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC--C-----------CCccEEEEEecCCeEEEEEC-C
Confidence 45678999 7765555554 55789999999766543332111 0 24567778876555544332 1
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--c--CCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
.+.|.++++... . ...+..........++++|++..+..+ . .+.|..++++ +.....+. .....
T Consensus 100 ~~~I~~~~~~g~---~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d--g~~~~~~~------~~~~~ 167 (267)
T 1npe_A 100 LDRIEVAKMDGT---Q-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD--GTNRRILA------QDNLG 167 (267)
T ss_dssp TTEEEEEETTSC---S-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT--SCCCEEEE------CTTCS
T ss_pred CCEEEEEEcCCC---C-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC--CCCcEEEE------ECCCC
Confidence 567888887632 1 122212223567899999976665544 3 4688888887 22222220 12224
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eC
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY 347 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~ 347 (432)
....++++|++..+.++-...+.|..+|+..... ...+.. ......++.. ++.++++. ..
T Consensus 168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~----~~~~~~--------------~~~P~gi~~d-~~~lyva~~~~ 228 (267)
T 1npe_A 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR----RKVLEG--------------LQYPFAVTSY-GKNLYYTDWKT 228 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE----EEEEEC--------------CCSEEEEEEE-TTEEEEEETTT
T ss_pred CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce----EEEecC--------------CCCceEEEEe-CCEEEEEECCC
Confidence 5789999998734555555678999999875432 122222 1233456654 33333343 33
Q ss_pred CeEEEEec
Q 014005 348 MNLKVFRY 355 (432)
Q Consensus 348 ~~i~iwd~ 355 (432)
+.|..+|.
T Consensus 229 ~~v~~~d~ 236 (267)
T 1npe_A 229 NSVIAMDL 236 (267)
T ss_dssp TEEEEEET
T ss_pred CeEEEEeC
Confidence 89999998
No 230
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.66 E-value=1.2e-05 Score=68.66 Aligned_cols=204 Identities=6% Similarity=-0.073 Sum_probs=129.7
Q ss_pred cEEEEEEcCCCCEEEEecc--cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 34 IVSAIEFDKTGDYLAVGDR--GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
....+.|+|+|.++++.+. ++.|++.|+.+++.. ..+.-...
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~---------------------------~~i~l~~~--------- 65 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVE---------------------------NIHKMDDS--------- 65 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEE---------------------------EEEECCTT---------
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEE---------------------------EEEecCCC---------
Confidence 4678999998765555443 579999999998743 22221110
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
.....+++ . .++..++.-.++.+.++|..+.+........ .+ ....+++++..++....
T Consensus 66 --~fgeGi~~--~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~--------------~g~glt~Dg~~l~vs~g- 124 (266)
T 2iwa_A 66 --YFGEGLTL--L-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK--------------DGWGLATDGKILYGSDG- 124 (266)
T ss_dssp --CCEEEEEE--E-TTEEEEEETTCSEEEEEETTTTEEEEEEECC-SS--------------SCCEEEECSSSEEEECS-
T ss_pred --cceEEEEE--e-CCEEEEEEecCCEEEEEECCCCcEEEEEECC-CC--------------CeEEEEECCCEEEEECC-
Confidence 12234555 3 2344445556899999999987744433322 11 12335567777766543
Q ss_pred ccceEEEEeecccccceeeEEeecCC----CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC-----
Q 014005 192 ENMATKIANVGNSVHARCQKVYPHAH----DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS----- 261 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~----- 261 (432)
++.+.+.|.. +.+..+.+.-+. -..++.+.+. ++..++.. .++.|.+.|.. +++....++....
T Consensus 125 -s~~l~viD~~---t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~-tg~V~~~I~~~g~~~~~~ 198 (266)
T 2iwa_A 125 -TSILYEIDPH---TFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAK-DGTLLGWILLPNLRKKLI 198 (266)
T ss_dssp -SSEEEEECTT---TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETT-TCCEEEEEECHHHHHHHH
T ss_pred -CCeEEEEECC---CCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECC-CCcEEEEEECCCcccccc
Confidence 7799999987 445555542221 1246778887 67655555 78999999999 7777777754210
Q ss_pred -CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccc
Q 014005 262 -NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 300 (432)
Q Consensus 262 -~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~ 300 (432)
.........+.++|+|++..+++++...+.+...++...
T Consensus 199 ~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 199 DEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp HTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 001112457899999998667777878899999998754
No 231
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.66 E-value=2.5e-05 Score=67.56 Aligned_cols=222 Identities=11% Similarity=0.055 Sum_probs=132.3
Q ss_pred cEEEEEEcCCCCEEE-EecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005 34 IVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 112 (432)
.+..++|++++..|. +-..++.|..++.++.... ..+....
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~---------------------------~~~~~~~----------- 78 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT---------------------------TIIRQDL----------- 78 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE---------------------------EEECTTC-----------
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE---------------------------EEEECCC-----------
Confidence 567899999765554 4445679999998764311 1111111
Q ss_pred hcceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 113 EEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 113 ~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
.....+++ ++++..++.+ ...+.|.++++.......+.... . .....+++++++..++.....
T Consensus 79 -~~p~~ia~--d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~--~-----------~~P~~i~vd~~~g~lyv~~~~ 142 (267)
T 1npe_A 79 -GSPEGIAL--DHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG--L-----------VNPRGIVTDPVRGNLYWTDWN 142 (267)
T ss_dssp -CCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--C-----------SSEEEEEEETTTTEEEEEECC
T ss_pred -CCccEEEE--EecCCeEEEEECCCCEEEEEEcCCCCEEEEEECC--C-----------CCccEEEEeeCCCEEEEEECC
Confidence 35678899 7765555544 55688999998754433222111 0 234677888866555544432
Q ss_pred c-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 192 E-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 192 ~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
. .+.|..+++... ..+.+..........+++++++..|..+ ..+.|..+|.+ .......+ .. ..
T Consensus 143 ~~~~~I~~~~~dg~----~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~-g~~~~~~~-------~~-~~ 209 (267)
T 1npe_A 143 RDNPKIETSHMDGT----NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA-QPGRRKVL-------EG-LQ 209 (267)
T ss_dssp SSSCEEEEEETTSC----CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-EEEEEEEE-------EC-CC
T ss_pred CCCcEEEEEecCCC----CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecC-CCceEEEe-------cC-CC
Confidence 1 356777776532 2222212334568899999987777665 67899999998 33222222 11 12
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~ 340 (432)
....++.. .+ .++++....+.|..+|..+++. +..+... .......+++.|++.
T Consensus 210 ~P~gi~~d-~~-~lyva~~~~~~v~~~d~~~g~~----~~~i~~g------------~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 210 YPFAVTSY-GK-NLYYTDWKTNSVIAMDLAISKE----MDTFHPH------------KQTRLYGITIALSQC 263 (267)
T ss_dssp SEEEEEEE-TT-EEEEEETTTTEEEEEETTTTEE----EEEECCS------------SCCCCCCEEEECSCC
T ss_pred CceEEEEe-CC-EEEEEECCCCeEEEEeCCCCCc----eEEEccc------------cccccceeeecCccC
Confidence 34566665 33 5555555678999999988775 3554431 012466788888764
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.64 E-value=1.2e-05 Score=79.49 Aligned_cols=159 Identities=10% Similarity=0.007 Sum_probs=93.0
Q ss_pred CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC---CCcceecceee----ccceEEEE
Q 014005 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP---SFAHGYHLEWT----ENMATKIA 199 (432)
Q Consensus 127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~----~~~~v~i~ 199 (432)
+..+++++.|+.|..+|..+++..-........ .....+..+| ++.. +.+... .++.+..+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~-----------~~~~~~~~sP~v~~g~v-~vg~~~~~~~~~g~v~a~ 188 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADH-----------KRSYTITGAPRVVNGKV-VIGNGGAEFGVRGYVTAY 188 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCT-----------TSCCBCCSCCEEETTEE-EECCBCTTTCCBCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCC-----------CCCccccCCcEEECCEE-EEEeCCCccCCCCEEEEE
Confidence 557888889999999999999854332221010 0011111122 2222 222211 26788899
Q ss_pred eecccccceeeEEeecCC------------------------------CCCeeEEEeCCCCCEEEEE-cCC---------
Q 014005 200 NVGNSVHARCQKVYPHAH------------------------------DFNINSISNNSDCETFVSA-DDL--------- 239 (432)
Q Consensus 200 d~~~~~~~~~~~~~~~~~------------------------------~~~i~~~~~~~~~~~l~~~-~d~--------- 239 (432)
|.. +++.+..+.... ......++++|+...+..+ .++
T Consensus 189 D~~---tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~ 265 (689)
T 1yiq_A 189 DAE---TGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRS 265 (689)
T ss_dssp ETT---TCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHH
T ss_pred ECC---CCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCC
Confidence 988 666665542110 0111257888888888888 665
Q ss_pred ----------eEEEEeCCCCCceeeEeecCCCCcCC--CCcceEEEEEcCCCCc---EEEEEeCCCeEEEEEcccccc
Q 014005 240 ----------RINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIYCN---LLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 240 ----------~i~lwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~---~l~~~~~dg~i~iwd~~~~~~ 302 (432)
.|..+|.+ +++....++..+..... ....+.......+| + .++.++.+|.++++|.++|++
T Consensus 266 ~~~gd~~y~~~v~AlD~~-TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G-~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 266 QAKGDNLFLSSIVAVNAD-TGEYVWHYQTTPGDAWDYTATQHMILAELPIDG-KPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp TTCSCCTTTTEEEEEETT-TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT-EEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCceeeeeEEEEEcc-CCceeEeeecCCcccccccCCCCcEEEeeccCC-cEEEEEEEECCCCeEEEEECCCCCE
Confidence 39999999 67766655332221111 11222222333355 4 788899999999999999986
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.60 E-value=7.4e-06 Score=74.79 Aligned_cols=199 Identities=9% Similarity=0.059 Sum_probs=118.1
Q ss_pred EEEEEcCCCCEEEEeccc------ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecC-Cccccccc
Q 014005 36 SAIEFDKTGDYLAVGDRG------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFDYLK 108 (432)
Q Consensus 36 ~~~~fsp~g~~l~t~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h-~~~~~~~~ 108 (432)
..+..+|+| +++++..+ |.|.+.|.++.+.+ .++..- .++
T Consensus 141 h~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~---------------------------~~~~~~~~~~----- 187 (462)
T 2ece_A 141 HTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPL---------------------------GKWEIDRGDQ----- 187 (462)
T ss_dssp EEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEE---------------------------EECCSBCTTC-----
T ss_pred cceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEE---------------------------EEEccCCCCc-----
Confidence 445677888 66665444 67899998876533 333211 100
Q ss_pred hhhhhcceeEEEEEEcCCCCEEEEEe-------------------CCCeEEEEEccCcceeeeeecCCCCcccccccccc
Q 014005 109 SLEIEEKINRVRWCAAPNGSMFILST-------------------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (432)
Q Consensus 109 ~~~~~~~v~~l~~~~s~~~~~l~s~~-------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (432)
.--+.+.| +|+++.++++. .+.+|.+||+.+++...........
T Consensus 188 -----~~~Yd~~~--~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g---------- 250 (462)
T 2ece_A 188 -----YLAYDFWW--NLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN---------- 250 (462)
T ss_dssp -----CCCCCEEE--ETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE----------
T ss_pred -----cccceEEE--CCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC----------
Confidence 22345778 88999888884 4789999999987644433331110
Q ss_pred cccccc--ccCCCCCcceecceee----ccceEEEEeecccccceeeEEe--ec----C-----------CCCCeeEEEe
Q 014005 170 EKNFMN--EHNPPSFAHGYHLEWT----ENMATKIANVGNSVHARCQKVY--PH----A-----------HDFNINSISN 226 (432)
Q Consensus 170 ~~~i~~--~~~~~~~~~~~~~~~~----~~~~v~i~d~~~~~~~~~~~~~--~~----~-----------~~~~i~~~~~ 226 (432)
..... ++++|++++.+.+... .+++|.+|..+.. .....+.+ .. + -......+.+
T Consensus 251 -~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g-~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 251 -RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG-KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp -EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT-EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred -CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC-ceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 12233 4569999988877641 1567766655431 22222221 00 0 0245788999
Q ss_pred CCCCCEEEEE--cCCeEEEEeCCCCC--ceeeEeecCCC-CcCCC------CcceEEEEEcCCCCcEEEEEe
Q 014005 227 NSDCETFVSA--DDLRINLWNLEISD--QCFNIVDMKPS-NMDDL------TEVITSAEFHPIYCNLLAYSS 287 (432)
Q Consensus 227 ~~~~~~l~~~--~d~~i~lwd~~~~~--~~~~~~~~~~~-~~~~~------~~~v~~~~~~p~~~~~l~~~~ 287 (432)
++||++|.++ ..+.|.+||+.... +.+..+...-. ....| ......++++||| ++|+++.
T Consensus 329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG-k~LyVaN 399 (462)
T 2ece_A 329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG-RRVYVTN 399 (462)
T ss_dssp CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS-SEEEEEC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC-CEEEEEc
Confidence 9999999988 68999999986232 22333311100 00000 1236789999999 7777776
No 234
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.58 E-value=4e-06 Score=75.64 Aligned_cols=217 Identities=10% Similarity=0.011 Sum_probs=123.5
Q ss_pred cCCCcEEEEEEcCCCCEEEEecc-----cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDR-----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~ 104 (432)
.+...+..++|+++|+++++-.. ++.|.+||+.+++.. ..+......
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~---------------------------~~~~~~~~~- 115 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLS---------------------------RVIYLPPPI- 115 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEE---------------------------EEEECCTTT-
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEE---------------------------EEEECChhh-
Confidence 35568999999999987665433 478999999876532 222211100
Q ss_pred cccchhhhhcceeEEEEEEcCCCCE-EEEEe---CCCeEEEEEccCcceeeeeec--CCCC--ccccccc-cc-------
Q 014005 105 DYLKSLEIEEKINRVRWCAAPNGSM-FILST---NDKTIKLWKVRDQKVKKIKEM--DHFP--FVSSENT-LL------- 168 (432)
Q Consensus 105 ~~~~~~~~~~~v~~l~~~~s~~~~~-l~s~~---~d~~i~iwd~~~~~~~~~~~~--~~~~--~~~~~~~-~~------- 168 (432)
......+..+++ ++++.. +++.. .++.|.+||+.+++...+... ...+ ....... ..
T Consensus 116 -----~~~~~~~~~v~v--d~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g 188 (343)
T 2qe8_A 116 -----TLSNSFVNDLAV--DLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDG 188 (343)
T ss_dssp -----SCTTCCCCEEEE--ETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTS
T ss_pred -----cccccccceEEE--ecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCC
Confidence 000045688999 665444 45544 678999999987765443211 0000 0000000 00
Q ss_pred ----cccccccccCCCCCcceecceeeccceEEEEeeccccc-----ce---eeEEeecCCCCCeeEEEeCCCCCEEEEE
Q 014005 169 ----AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH-----AR---CQKVYPHAHDFNINSISNNSDCETFVSA 236 (432)
Q Consensus 169 ----~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~-----~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 236 (432)
....+..+++++++..++..... ...+..++...... .+ .+.. .++......++++++|+++++.
T Consensus 189 ~~~~~~~~~~gia~s~dg~~ly~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~g~~g~pdgia~d~~G~l~va~ 265 (343)
T 2qe8_A 189 TVIRPHLGVNGIVLDAENEWLYLSPMH-STSMYRIKSADLSNLQLTDAELGSKIER--YSEKPICDGISIDKDHNIYVGD 265 (343)
T ss_dssp CEECCCCCEEEEEECTTSCEEEEEESS-CSEEEEEEHHHHTCTTCCHHHHHTTCEE--EEECCSCSCEEECTTCCEEEEE
T ss_pred ceeceecccceeEeccCCCEEEEEeCC-CCeEEEEEHHHhcCCCCChhhhhcceEe--cccCCCCceEEECCCCCEEEEc
Confidence 01234678899998877766541 22333333210000 00 0111 1234466789999999888888
Q ss_pred -cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeE
Q 014005 237 -DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 292 (432)
Q Consensus 237 -~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 292 (432)
.++.|.+||.+ .+....+.. ..+...+.+++|.+++ +++++.+..+.+
T Consensus 266 ~~~~~V~~~d~~-~G~~~~~~~------~~~~~~p~~va~~~~g-~l~v~~~~~~~~ 314 (343)
T 2qe8_A 266 LAHSAIGVITSA-DRAYKLLVT------DEKLSWTDSFNFGSDG-YLYFDCNQLHHS 314 (343)
T ss_dssp GGGTEEEEEETT-TTEEEEEEE------CGGGSCEEEEEECTTS-CEEEEECCGGGS
T ss_pred cCCCeEEEEECC-CCCEEEEEE------CCceecCCeeEECCCC-cEEEEeCccccc
Confidence 89999999994 244322220 1224568999999998 877777654443
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.56 E-value=1.2e-05 Score=71.82 Aligned_cols=185 Identities=8% Similarity=-0.036 Sum_probs=112.5
Q ss_pred ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc
Q 014005 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (432)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 194 (432)
.+.++.. .+++. +..++.++.|..+|.. ++........ . ..+..+...+++...+.. +
T Consensus 138 ~~~~~~~--~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~--~-----------~~~~~~~~d~~g~l~v~t-----~ 195 (330)
T 3hxj_A 138 IYATPIV--SEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN--D-----------AITSAASIGKDGTIYFGS-----D 195 (330)
T ss_dssp CCSCCEE--CTTSC-EEEECTTSEEEEECTT-SCEEEEEECS--S-----------CCCSCCEECTTCCEEEES-----S
T ss_pred eeeeeEE--cCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC--C-----------CceeeeEEcCCCEEEEEe-----C
Confidence 3455555 55665 6667778999999988 5533222221 1 334455555555544332 5
Q ss_pred eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEE
Q 014005 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 274 (432)
Q Consensus 195 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 274 (432)
.+..+| . +++....+ ......+.++...+++...+...++.+..+|.. +..+..+ ......+..+.
T Consensus 196 ~l~~~d-~---~g~~~~~~-~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~--g~~~~~~-------~~~~~~~~~~~ 261 (330)
T 3hxj_A 196 KVYAIN-P---DGTEKWNF-YAGYWTVTRPAISEDGTIYVTSLDGHLYAINPD--GTEKWRF-------KTGKRIESSPV 261 (330)
T ss_dssp SEEEEC-T---TSCEEEEE-CCSSCCCSCCEECTTSCEEEEETTTEEEEECTT--SCEEEEE-------ECSSCCCSCCE
T ss_pred EEEEEC-C---CCcEEEEE-ccCCcceeceEECCCCeEEEEcCCCeEEEECCC--CCEeEEe-------eCCCCccccce
Confidence 667777 3 34444444 334466888889888866555578888888754 4444443 11122233455
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEe
Q 014005 275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFR 354 (432)
Q Consensus 275 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd 354 (432)
+.+++ . |..++.+|.+..+|. +++. ...+... ...+.++...++|++.+...+|.+++..
T Consensus 262 ~~~~g-~-l~v~t~~ggl~~~d~-~g~~----~~~~~~~-------------~~~~~~~~~d~~g~l~~gt~~G~~~~~~ 321 (330)
T 3hxj_A 262 IGNTD-T-IYFGSYDGHLYAINP-DGTE----KWNFETG-------------SWIIATPVIDENGTIYFGTRNGKFYALF 321 (330)
T ss_dssp ECTTS-C-EEEECTTCEEEEECT-TSCE----EEEEECS-------------SCCCSCCEECTTCCEEEECTTSCEEEEE
T ss_pred EcCCC-e-EEEecCCCCEEEECC-CCcE----EEEEEcC-------------CccccceEEcCCCEEEEEcCCCeEEEEe
Confidence 66665 4 566888889999995 5554 2333321 3456778888899877766669888876
Q ss_pred c
Q 014005 355 Y 355 (432)
Q Consensus 355 ~ 355 (432)
.
T Consensus 322 ~ 322 (330)
T 3hxj_A 322 N 322 (330)
T ss_dssp C
T ss_pred c
Confidence 6
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.55 E-value=1.5e-05 Score=78.62 Aligned_cols=148 Identities=9% Similarity=0.068 Sum_probs=91.1
Q ss_pred eEEEEeecccccceeeEEeecCCC--------CCeeEEEeCCCC---CEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC
Q 014005 195 ATKIANVGNSVHARCQKVYPHAHD--------FNINSISNNSDC---ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (432)
Q Consensus 195 ~v~i~d~~~~~~~~~~~~~~~~~~--------~~i~~~~~~~~~---~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~ 262 (432)
.|..+|.. +++.+..+...+. .....+....+| ..++.+ .+|.++++|.+ +++.+..+...+..
T Consensus 284 sv~AlD~~---TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~-tG~~l~~~~~~~~~ 359 (677)
T 1kb0_A 284 SIVALDPD---TGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRT-NGKFISAKNFVPVN 359 (677)
T ss_dssp EEEEECTT---TCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETT-TCCEEEEEESSCCS
T ss_pred EEEEEECC---CCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECC-CCCEeccccccccC
Confidence 47777877 6666666532221 122223333466 567778 89999999999 67666554332211
Q ss_pred c----CCCCcce------------------------EEEEEcCCCCcEEEEEeC--------------------------
Q 014005 263 M----DDLTEVI------------------------TSAEFHPIYCNLLAYSSS-------------------------- 288 (432)
Q Consensus 263 ~----~~~~~~v------------------------~~~~~~p~~~~~l~~~~~-------------------------- 288 (432)
. ......+ ..++++|+. .++++...
T Consensus 360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 438 (677)
T 1kb0_A 360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT 438 (677)
T ss_dssp SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGG
T ss_pred cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEeChhcceeeeccccccccccccccccccc
Confidence 0 0000001 257899987 67766543
Q ss_pred -----------------CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeE
Q 014005 289 -----------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 350 (432)
Q Consensus 289 -----------------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i 350 (432)
.|.|..||+.+++.. -.+.. ..++....++.+|..++.++ ++.+
T Consensus 439 ~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~----W~~~~--------------~~~~~~g~~~~~g~~v~~g~~dg~l 500 (677)
T 1kb0_A 439 GWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA----WSVEH--------------VSPWNGGTLTTAGNVVFQGTADGRL 500 (677)
T ss_dssp TCCCCEEECSSCCCSCCEEEEEEEETTTTEEE----EEEEE--------------SSSCCCCEEEETTTEEEEECTTSEE
T ss_pred ccccccccccccCCCCCccEEEEEeCCCCcEE----eecCC--------------CCCCcCcceEeCCCEEEEECCCCcE
Confidence 278999999998862 33332 23444555677777777774 4999
Q ss_pred EEEec---CcceeEeecc
Q 014005 351 KVFRY---EPVMTLSFCG 365 (432)
Q Consensus 351 ~iwd~---~~~~~~~~~~ 365 (432)
++||. +.+.++....
T Consensus 501 ~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 501 VAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp EEEETTTCCEEEEEECSS
T ss_pred EEEECCCCceeeeeeCCC
Confidence 99999 7777777654
No 237
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.54 E-value=2.4e-05 Score=66.08 Aligned_cols=185 Identities=9% Similarity=0.071 Sum_probs=115.6
Q ss_pred cEEEEEEcCCCCEEEEecccc--eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
-...+.|+ ++.++.+.+.+| .|+.+|+++++.. ..+...
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~---------------------------~~~~l~----------- 84 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTL---------------------------QQIELG----------- 84 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEE---------------------------EEEECC-----------
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEE---------------------------EEEecC-----------
Confidence 45789998 677667766665 8999999998743 222211
Q ss_pred hhccee--EEEEEEcCCCCEEEE-EeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 112 IEEKIN--RVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 112 ~~~~v~--~l~~~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
.... .+.. +++.+.. .-.++.+.++|..+.+......... ....+++++..++..
T Consensus 85 --~~~FgeGit~----~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~----------------eG~glt~dg~~L~~S 142 (262)
T 3nol_A 85 --KRYFGEGISD----WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG----------------EGWGLTHNDQYLIMS 142 (262)
T ss_dssp --TTCCEEEEEE----ETTEEEEEESSSSEEEEEETTTCCEEEEEECSS----------------CCCCEEECSSCEEEC
T ss_pred --CccceeEEEE----eCCEEEEEEeeCCEEEEEECccCcEEEEEECCC----------------CceEEecCCCEEEEE
Confidence 2222 3444 3444444 4568999999999887554433321 223334566666555
Q ss_pred eeeccceEEEEeecccccceeeEEeec---CCC-CCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC-
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPH---AHD-FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN- 262 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~---~~~-~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~- 262 (432)
.. ++.+.++|.. +.+.+..+.- +.. ..++.+.+. +|+..+.. .++.|.+.|.+ +++....++.....
T Consensus 143 dG--s~~i~~iDp~---T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~-tG~V~~~Id~~~L~~ 215 (262)
T 3nol_A 143 DG--TPVLRFLDPE---SLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPE-TGKVTGIIDLNGILA 215 (262)
T ss_dssp CS--SSEEEEECTT---TCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTT-TCBEEEEEECTTGGG
T ss_pred CC--CCeEEEEcCC---CCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECC-CCcEEEEEECCcCcc
Confidence 44 5678899987 4445544422 111 345667776 67666666 78899999999 78888888654221
Q ss_pred ----cCCCCcceEEEEEcCCCCcEEEEEe
Q 014005 263 ----MDDLTEVITSAEFHPIYCNLLAYSS 287 (432)
Q Consensus 263 ----~~~~~~~v~~~~~~p~~~~~l~~~~ 287 (432)
........+.|+|+|++ +.|+..+
T Consensus 216 ~~~~~~~~~~vlNGIA~dp~~-~~lfVTG 243 (262)
T 3nol_A 216 EAGPLPSPIDVLNGIAWDKEH-HRLFVTG 243 (262)
T ss_dssp GSCSCCSSCCCEEEEEEETTT-TEEEEEE
T ss_pred ccccccCcCCceEEEEEcCCC-CEEEEEC
Confidence 11223467999999998 4444444
No 238
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.53 E-value=1.5e-05 Score=67.43 Aligned_cols=197 Identities=10% Similarity=0.104 Sum_probs=118.5
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCC--eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
.-...+.| + ++.++.+++.+| .|+.+|+++++......+.. ........+.+..++....
T Consensus 43 ~ftqGL~~--~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~--------------~~FgeGit~~g~~ly~ltw- 104 (262)
T 3nol_A 43 AFTEGFFY--R-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK--------------RYFGEGISDWKDKIVGLTW- 104 (262)
T ss_dssp CEEEEEEE--E-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT--------------TCCEEEEEEETTEEEEEES-
T ss_pred cccceEEE--E-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC--------------ccceeEEEEeCCEEEEEEe-
Confidence 44578999 6 677777777766 89999999998655443321 1222111222334443332
Q ss_pred ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC-cc
Q 014005 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EV 269 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~-~~ 269 (432)
.++.+.++|.. +.+.+..+.....+ ..++ +++..|+.+ .++.|.++|.+ +.+....+.+.. .+.. ..
T Consensus 105 ~~~~v~v~D~~---t~~~~~ti~~~~eG--~glt--~dg~~L~~SdGs~~i~~iDp~-T~~v~~~I~V~~---~g~~~~~ 173 (262)
T 3nol_A 105 KNGLGFVWNIR---NLRQVRSFNYDGEG--WGLT--HNDQYLIMSDGTPVLRFLDPE-SLTPVRTITVTA---HGEELPE 173 (262)
T ss_dssp SSSEEEEEETT---TCCEEEEEECSSCC--CCEE--ECSSCEEECCSSSEEEEECTT-TCSEEEEEECEE---TTEECCC
T ss_pred eCCEEEEEECc---cCcEEEEEECCCCc--eEEe--cCCCEEEEECCCCeEEEEcCC-CCeEEEEEEecc---CCccccc
Confidence 16789999998 67777777332221 2333 567778777 68889999998 566666553211 1111 34
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE-Eee
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRD 346 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~-s~~ 346 (432)
++.+.|. +| .+.+..-.++.|.+.|.++++. +..+......+.... ........+.++|+|+++.|. +|.
T Consensus 174 lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V----~~~Id~~~L~~~~~~-~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 174 LNELEWV-DG-EIFANVWQTNKIVRIDPETGKV----TGIIDLNGILAEAGP-LPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEEEE-TT-EEEEEETTSSEEEEECTTTCBE----EEEEECTTGGGGSCS-CCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cceeEEE-CC-EEEEEEccCCeEEEEECCCCcE----EEEEECCcCcccccc-ccCcCCceEEEEEcCCCCEEEEECC
Confidence 5667776 66 7776666788999999999986 444443100000000 000124668999999866555 454
No 239
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.49 E-value=3.7e-05 Score=68.54 Aligned_cols=252 Identities=9% Similarity=0.004 Sum_probs=139.5
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc------cc-
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF------DY- 106 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~------~~- 106 (432)
...+++++++|+++.++..++.|..|+..+++.. .+.... .+ +-
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~----------------------------~~~~~~-~~~~~~~~~g~ 70 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV----------------------------DFAYAS-PYWNKAFCENS 70 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE----------------------------EEEESC-TTCCHHHHTTC
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE----------------------------EEeccc-ccccccccccc
Confidence 3457889999997888888899999987664321 111000 00 00
Q ss_pred --cchhhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC-CC
Q 014005 107 --LKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SF 182 (432)
Q Consensus 107 --~~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 182 (432)
............+++ .+ ++ .|+.+...+.|..+|..++..+.+....... .-.....++..+ ++
T Consensus 71 ~~~~~~~~~~~p~gi~~--~~~~g-~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~---------~~~~p~~i~~d~~~G 138 (322)
T 2fp8_A 71 TDAEKRPLCGRTYDISY--NLQNN-QLYIVDCYYHLSVVGSEGGHATQLATSVDGV---------PFKWLYAVTVDQRTG 138 (322)
T ss_dssp CCGGGHHHHCCEEEEEE--ETTTT-EEEEEETTTEEEEECTTCEECEEEESEETTE---------ECSCEEEEEECTTTC
T ss_pred cchhccccCCCCceEEE--cCCCC-cEEEEECCCCEEEEeCCCCEEEEecccCCCC---------cccccceEEEecCCC
Confidence 000011145788998 76 55 4555555556888887766543332111000 002345577777 76
Q ss_pred cceeccee---------------eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEe
Q 014005 183 AHGYHLEW---------------TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWN 245 (432)
Q Consensus 183 ~~~~~~~~---------------~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd 245 (432)
...++... ...+.+..+|.. ..+..... ......+.++++|+++.+..+ .++.|..|+
T Consensus 139 ~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~---~~~~~~~~--~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~ 213 (322)
T 2fp8_A 139 IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS---TKETTLLL--KELHVPGGAEVSADSSFVLVAEFLSHQIVKYW 213 (322)
T ss_dssp CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT---TTEEEEEE--EEESCCCEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred EEEEECCcccccccccceehcccCCCceEEEEeCC---CCEEEEec--cCCccCcceEECCCCCEEEEEeCCCCeEEEEE
Confidence 54443211 113567777765 22222211 112356689999999877666 578999999
Q ss_pred CCCCC-ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeC----------CCeEEEEEccccccccccceeecccc
Q 014005 246 LEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----------RGFVRLVDMRQSALCDHSARILRDAA 314 (432)
Q Consensus 246 ~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~h~ 314 (432)
+.... .....+ ....+ ...++++++| ++.++... .+.|..+|.. ++. +..+.. +
T Consensus 214 ~~~~~~~~~~~~-------~~~~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~----~~~~~~-~ 278 (322)
T 2fp8_A 214 LEGPKKGTAEVL-------VKIPN-PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEF-GNI----LEVIPL-P 278 (322)
T ss_dssp SSSTTTTCEEEE-------EECSS-EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTT-SCE----EEEEEC-C
T ss_pred CCCCcCCccceE-------EeCCC-CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCC-CCE----EEEEEC-C
Confidence 87211 112222 11112 6789999999 76666544 4678888864 554 344443 1
Q ss_pred cccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005 315 ESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY 355 (432)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~ 355 (432)
.... ...++.+++ .+|++.++. ..+.|..+++
T Consensus 279 ~g~~--------~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 279 PPFA--------GEHFEQIQE-HDGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp TTTT--------TSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred CCCc--------cccceEEEE-eCCEEEEeecCCCceEEEec
Confidence 1000 134566666 456655554 3488888887
No 240
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.47 E-value=7.4e-05 Score=62.57 Aligned_cols=199 Identities=9% Similarity=0.075 Sum_probs=118.1
Q ss_pred cceeEEEEEEcCCCCEEEEEeCC--CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 114 EKINRVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
.-...+.| +. +.++.+++.+ ..|+.+|+.+++......+... .........+..++....
T Consensus 21 ~ftqGL~~--~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~--------------~fgeGi~~~~~~ly~ltw- 82 (243)
T 3mbr_X 21 AFTEGLFY--LR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP--------------YFGAGIVAWRDRLIQLTW- 82 (243)
T ss_dssp CCEEEEEE--ET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT--------------CCEEEEEEETTEEEEEES-
T ss_pred cccccEEE--EC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC--------------cceeEEEEeCCEEEEEEe-
Confidence 56779999 54 5566666665 4899999999986554443321 111111222333333322
Q ss_pred ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (432)
.++.+.++|.. +.+.+.++..+. .=..++ +++..|..+ .++.|.++|.+ +.+....+.+... ...-..+
T Consensus 83 ~~~~v~v~D~~---tl~~~~ti~~~~--~Gwglt--~dg~~L~vSdgs~~l~~iDp~-t~~~~~~I~V~~~--g~~~~~l 152 (243)
T 3mbr_X 83 RNHEGFVYDLA---TLTPRARFRYPG--EGWALT--SDDSHLYMSDGTAVIRKLDPD-TLQQVGSIKVTAG--GRPLDNL 152 (243)
T ss_dssp SSSEEEEEETT---TTEEEEEEECSS--CCCEEE--ECSSCEEEECSSSEEEEECTT-TCCEEEEEECEET--TEECCCE
T ss_pred eCCEEEEEECC---cCcEEEEEeCCC--CceEEe--eCCCEEEEECCCCeEEEEeCC-CCeEEEEEEEccC--Ccccccc
Confidence 16789999998 777887773332 223444 567778878 88899999998 5666665533211 0011345
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC-EEEEee
Q 014005 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD 346 (432)
Q Consensus 271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~s~~ 346 (432)
+.+.+. +| .+++..-.+..|.+.|.++++. +..+......+...........-.+.++++|+++ ++++|-
T Consensus 153 NeLe~~-~G-~lyanvw~s~~I~vIDp~tG~V----~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 153 NELEWV-NG-ELLANVWLTSRIARIDPASGKV----VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEEE-TT-EEEEEETTTTEEEEECTTTCBE----EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eeeEEe-CC-EEEEEECCCCeEEEEECCCCCE----EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 677766 56 6666665788999999999986 4554431111100000000124678999999765 455564
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.47 E-value=3.3e-06 Score=75.55 Aligned_cols=240 Identities=11% Similarity=0.036 Sum_probs=128.6
Q ss_pred chhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccc
Q 014005 4 NREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF 83 (432)
Q Consensus 4 ~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 83 (432)
+...+.....|++.-.-+ ...++.++.+|. |..++.++.|..|| .+++..
T Consensus 3 ~~~~~~g~~~W~~~~~~~------------~~~~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~---------------- 52 (330)
T 3hxj_A 3 RGGVNDCKIKWEFLIGNS------------IDSSPILAKNGT-IYLGSSNKNLYAIN-TDGSVK---------------- 52 (330)
T ss_dssp ---------CCTTTSCEE------------ECCCCEECTTSC-EECSSTTTTTEEEC-TTSCEE----------------
T ss_pred ccccCCceEEEEEeCCCC------------cccCceEccCCe-EEEEcCCCEEEEEC-CCCcEE----------------
Confidence 344556677888763211 223455656665 56677788899999 665421
Q ss_pred cccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccc
Q 014005 84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS 163 (432)
Q Consensus 84 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 163 (432)
..+.... ..+.++.. .+++. +..++.+ |..+|. +++... ......
T Consensus 53 -----------~~~~~~~------------~~~~~~~~--~~~g~-l~v~t~~--l~~~d~-~g~~~~--~~~~~~---- 97 (330)
T 3hxj_A 53 -----------WFFKSGE------------IIECRPSI--GKDGT-IYFGSDK--VYAINP-DGTEKW--RFDTKK---- 97 (330)
T ss_dssp -----------ESSCGGG------------EEEECCEE--TTTTE-ECCSSCE--EEEECC-CGGGGG--GSCC------
T ss_pred -----------EEEecCC------------CcccceEE--ecCCc-EEEecCc--EEEECC-CCcEEE--EEECCC----
Confidence 1111122 34456666 56664 5555544 888886 443211 111111
Q ss_pred ccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEE
Q 014005 164 ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINL 243 (432)
Q Consensus 164 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~l 243 (432)
......... ...+..++. ++.+..+|.. ++....+ ......+.++...+++..++...++.+..
T Consensus 98 -------~~~~~~~~~--~~~l~v~t~--~~~l~~~d~~----g~~~~~~-~~~~~~~~~~~~~~~g~l~vgt~~~~l~~ 161 (330)
T 3hxj_A 98 -------AIVSDFTIF--EDILYVTSM--DGHLYAINTD----GTEKWRF-KTKKAIYATPIVSEDGTIYVGSNDNYLYA 161 (330)
T ss_dssp ----------CCEEEE--TTEEEEECT--TSEEEEECTT----SCEEEEE-ECSSCCCSCCEECTTSCEEEECTTSEEEE
T ss_pred -------CcccCceEE--CCEEEEEec--CCEEEEEcCC----CCEEEEE-cCCCceeeeeEEcCCCEEEEEcCCCEEEE
Confidence 111111111 333444444 6777777765 1223333 23444566777777886444338899999
Q ss_pred EeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccce
Q 014005 244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (432)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~ 323 (432)
+|.+ +.....+ ......+.++...+++ .+.+ ++ +.+..+| .+++. ...+...
T Consensus 162 ~d~~--g~~~~~~-------~~~~~~~~~~~~d~~g-~l~v-~t--~~l~~~d-~~g~~----~~~~~~~---------- 213 (330)
T 3hxj_A 162 INPD--GTEKWRF-------KTNDAITSAASIGKDG-TIYF-GS--DKVYAIN-PDGTE----KWNFYAG---------- 213 (330)
T ss_dssp ECTT--SCEEEEE-------ECSSCCCSCCEECTTC-CEEE-ES--SSEEEEC-TTSCE----EEEECCS----------
T ss_pred ECCC--CCEeEEE-------ecCCCceeeeEEcCCC-EEEE-Ee--CEEEEEC-CCCcE----EEEEccC----------
Confidence 9988 4444433 2223446667777777 6544 44 7899999 66654 2333321
Q ss_pred eeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005 324 TEIIASISDIKFANDGQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 324 ~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~ 355 (432)
...+.++...++|.+.+...++.+..+|.
T Consensus 214 ---~~~~~~~~~~~~g~l~v~t~~~gl~~~~~ 242 (330)
T 3hxj_A 214 ---YWTVTRPAISEDGTIYVTSLDGHLYAINP 242 (330)
T ss_dssp ---SCCCSCCEECTTSCEEEEETTTEEEEECT
T ss_pred ---CcceeceEECCCCeEEEEcCCCeEEEECC
Confidence 34577888899987766655578888887
No 242
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.47 E-value=4.5e-05 Score=64.49 Aligned_cols=185 Identities=6% Similarity=0.014 Sum_probs=117.2
Q ss_pred cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
....+.|+. +.++.+.+.+|.|+++|+++++.. ..+. .
T Consensus 56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~---------------------------~~~l--~------------ 93 (268)
T 3nok_A 56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPV---------------------------WMER--L------------ 93 (268)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCS---------------------------EEEE--C------------
T ss_pred ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEE---------------------------eEEC--C------------
Confidence 457888873 566677788889999999998754 2221 1
Q ss_pred cce--eEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 114 EKI--NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 114 ~~v--~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
... ..+++ . .++.+...-.++.+.++|..+.+.......... .....+++..++....
T Consensus 94 ~~~FgeGit~--~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e----------------GwGLt~Dg~~L~vSdG- 153 (268)
T 3nok_A 94 GNIFAEGLAS--D-GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE----------------GWGLCYWNGKLVRSDG- 153 (268)
T ss_dssp TTCCEEEEEE--C-SSCEEEEESSSCEEEEEETTTTEEEEEEECSSC----------------CCCEEEETTEEEEECS-
T ss_pred CCcceeEEEE--e-CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCc----------------eeEEecCCCEEEEECC-
Confidence 222 23555 3 234445555789999999998875544333211 1233355666665554
Q ss_pred ccceEEEEeecccccceeeEEeec-CC---CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC----
Q 014005 192 ENMATKIANVGNSVHARCQKVYPH-AH---DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN---- 262 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~-~~---~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~---- 262 (432)
++.+.++|.. +.+.++.+.- .+ -..++.+.|. +|+..+.. .++.|.+.|.+ +++.+..++.....
T Consensus 154 -s~~l~~iDp~---T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~-TG~V~~~Idl~~L~~~~~ 227 (268)
T 3nok_A 154 -GTMLTFHEPD---GFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA-TGTVVGVIDASALTRAVA 227 (268)
T ss_dssp -SSEEEEECTT---TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT-TCBEEEEEECHHHHHHHT
T ss_pred -CCEEEEEcCC---CCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC-CCcEEEEEECCCCccccc
Confidence 7789999987 4455554421 11 1245677776 77666656 78899999999 78888888654210
Q ss_pred --cCCCCcceEEEEEcCCCCcEEEEE
Q 014005 263 --MDDLTEVITSAEFHPIYCNLLAYS 286 (432)
Q Consensus 263 --~~~~~~~v~~~~~~p~~~~~l~~~ 286 (432)
.....+..+.|+++|++.+++++|
T Consensus 228 ~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 228 GQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ccccCcCCceEEEEEcCCCCEEEEeC
Confidence 112234679999999885666655
No 243
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.42 E-value=5.3e-05 Score=74.92 Aligned_cols=59 Identities=8% Similarity=0.010 Sum_probs=40.7
Q ss_pred CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec---CcceeEeec
Q 014005 289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY---EPVMTLSFC 364 (432)
Q Consensus 289 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~~~~~ 364 (432)
+|.|..||+.+|+. +-.+..+ .++....++..|.+++.|+ |+.++.||. +.+.+++..
T Consensus 454 ~g~l~A~D~~tG~~----~W~~~~~--------------~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 454 SGKLIAWDPVKQQA----AWEVPYV--------------TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp EEEEEEEETTTTEE----EEEEEES--------------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ceeEEEEECCCCCe----EeEccCC--------------CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 37899999999886 3334332 2333345666677888875 499999999 777777765
Q ss_pred c
Q 014005 365 G 365 (432)
Q Consensus 365 ~ 365 (432)
.
T Consensus 516 ~ 516 (689)
T 1yiq_A 516 S 516 (689)
T ss_dssp S
T ss_pred C
Confidence 4
No 244
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.41 E-value=0.00025 Score=60.24 Aligned_cols=215 Identities=12% Similarity=0.139 Sum_probs=123.2
Q ss_pred cceeEEEEEEcCCCC-EEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
..+..++| .|++. ++++...++.|...|.. ++......+... .....+++.+++.+.+....
T Consensus 27 ~~lSGla~--~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~------------~D~EGIa~~~~g~~~vs~E~-- 89 (255)
T 3qqz_A 27 NNISSLTW--SAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV------------KDLETIEYIGDNQFVISDER-- 89 (255)
T ss_dssp SCEEEEEE--ETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC------------SSEEEEEECSTTEEEEEETT--
T ss_pred cCcceeEE--eCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC------------CChHHeEEeCCCEEEEEECC--
Confidence 67999999 66655 55557778899999988 554433322211 34566777777776665433
Q ss_pred cceEEEEeecccccceeeEEee-----cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCC--CCCceeeEeecCCCCcC
Q 014005 193 NMATKIANVGNSVHARCQKVYP-----HAHDFNINSISNNSDCETFVSA-DDLRINLWNLE--ISDQCFNIVDMKPSNMD 264 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~--~~~~~~~~~~~~~~~~~ 264 (432)
++.+.++++............. .........++++|.++.|.++ ......+|.++ .....+.+.+.+...-.
T Consensus 90 ~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~ 169 (255)
T 3qqz_A 90 DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQ 169 (255)
T ss_dssp TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHT
T ss_pred CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccc
Confidence 5677777776432211222221 1234456899999998777766 43333444443 11222333211000001
Q ss_pred CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
.+...+.+++++|...++++.....+.+.++|.. |+. +..+.-. . ....+.........++|.++|++.++
T Consensus 170 ~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~----~~~~~L~-~---g~~~l~~~~~qpEGia~d~~G~lyIv 240 (255)
T 3qqz_A 170 FTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEV----IGEMSLT-K---GSRGLSHNIKQAEGVAMDASGNIYIV 240 (255)
T ss_dssp CCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCE----EEEEECS-T---TGGGCSSCCCSEEEEEECTTCCEEEE
T ss_pred cccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCE----EEEEEcC-C---ccCCcccccCCCCeeEECCCCCEEEE
Confidence 1233578999999875777778888899999976 443 2332220 0 00000001246789999999987777
Q ss_pred eeCCeEEEEe
Q 014005 345 RDYMNLKVFR 354 (432)
Q Consensus 345 ~~~~~i~iwd 354 (432)
+.-+.++.+.
T Consensus 241 sE~n~~y~f~ 250 (255)
T 3qqz_A 241 SEPNRFYRFT 250 (255)
T ss_dssp ETTTEEEEEE
T ss_pred cCCceEEEEE
Confidence 5447666553
No 245
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.41 E-value=7.3e-05 Score=63.19 Aligned_cols=196 Identities=10% Similarity=0.043 Sum_probs=120.0
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccccc--ccCCCCCcceecceee
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN--EHNPPSFAHGYHLEWT 191 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~ 191 (432)
.....+.| + ++.++.+.+.+|.|+++|+++++..... +.. .... ++. .+..++....
T Consensus 55 ~ftqGL~~--~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~--------------~~FgeGit~--~g~~Ly~ltw- 113 (268)
T 3nok_A 55 AFTQGLVF--H-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG--------------NIFAEGLAS--DGERLYQLTW- 113 (268)
T ss_dssp CCEEEEEE--E-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT--------------TCCEEEEEE--CSSCEEEEES-
T ss_pred cccceEEE--E-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC--------------CcceeEEEE--eCCEEEEEEc-
Confidence 44578888 4 4667777888899999999999855443 321 1221 333 3334433322
Q ss_pred ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (432)
.++.+.++|.. +.+.+..+.... .-..++ ++++.|+.+ .++.|.++|.+ +.+....+.+... ...-..+
T Consensus 114 ~~~~v~V~D~~---Tl~~~~ti~~~~--eGwGLt--~Dg~~L~vSdGs~~l~~iDp~-T~~v~~~I~V~~~--g~~v~~l 183 (268)
T 3nok_A 114 TEGLLFTWSGM---PPQRERTTRYSG--EGWGLC--YWNGKLVRSDGGTMLTFHEPD-GFALVGAVQVKLR--GQPVELI 183 (268)
T ss_dssp SSCEEEEEETT---TTEEEEEEECSS--CCCCEE--EETTEEEEECSSSEEEEECTT-TCCEEEEEECEET--TEECCCE
T ss_pred cCCEEEEEECC---cCcEEEEEeCCC--ceeEEe--cCCCEEEEECCCCEEEEEcCC-CCeEEEEEEeCCC--Ccccccc
Confidence 17789999998 777777773322 223444 567888888 79999999998 5666665533111 1111245
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC-CEEEEee
Q 014005 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD 346 (432)
Q Consensus 271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~s~~ 346 (432)
+.+.|. +| .+.+..-.++.|.+.|.++++. +..+......+...........-.+.++++|++ +++++|-
T Consensus 184 NeLe~~-dG-~lyanvw~s~~I~vIDp~TG~V----~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 184 NELECA-NG-VIYANIWHSSDVLEIDPATGTV----VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEEEE-TT-EEEEEETTCSEEEEECTTTCBE----EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred cccEEe-CC-EEEEEECCCCeEEEEeCCCCcE----EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 777877 66 7776666788999999999986 344443100000000000012467899999975 5666675
No 246
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.37 E-value=0.00022 Score=62.99 Aligned_cols=228 Identities=10% Similarity=0.033 Sum_probs=126.6
Q ss_pred CcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 112 (432)
.....++|+++|+++++-..++.|..||.++... ..+. -.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~----------------------------~~~~-~~----------- 71 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ----------------------------IHAT-VE----------- 71 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE----------------------------EEEE-CS-----------
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE----------------------------EEEe-CC-----------
Confidence 4678899999999777766788888888765321 1111 12
Q ss_pred hcceeEEEEEEcCCCCEEEEEeCC-C-eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 113 EEKINRVRWCAAPNGSMFILSTND-K-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 113 ~~~v~~l~~~~s~~~~~l~s~~~d-~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
.....+++ .++++++++.... + .|..++..+++...+....... ....++..+.+..++....
T Consensus 72 -~~p~gia~--~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~------------~~~g~~~~~~~~~~v~d~~ 136 (306)
T 2p4o_A 72 -GKVSGLAF--TSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAI------------FLNGITPLSDTQYLTADSY 136 (306)
T ss_dssp -SEEEEEEE--CTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCS------------CEEEEEESSSSEEEEEETT
T ss_pred -CCceeEEE--cCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCcc------------ccCcccccCCCcEEEEECC
Confidence 45788999 8899866555332 2 4666777777755443321100 0111111223322222111
Q ss_pred eccceEEEEeecccccceeeEEe-------ecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCce--eeEeecC
Q 014005 191 TENMATKIANVGNSVHARCQKVY-------PHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQC--FNIVDMK 259 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~--~~~~~~~ 259 (432)
.+.+..+|.... ..+..... ........+.+ +++++.+..+ ..+.|..++++..+.. ...+
T Consensus 137 --~g~i~~~d~~~~-~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~--- 208 (306)
T 2p4o_A 137 --RGAIWLIDVVQP-SGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF--- 208 (306)
T ss_dssp --TTEEEEEETTTT-EEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE---
T ss_pred --CCeEEEEeCCCC-cEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE---
Confidence 566666665421 01111000 00111234555 7788777766 6789999998732221 1111
Q ss_pred CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc---
Q 014005 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA--- 336 (432)
Q Consensus 260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s--- 336 (432)
. .......++++++| ++.++....+.|.++|.. ++... +..+... ....++++|.
T Consensus 209 ----~-~~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~~-G~~~~--~~~~~~~-------------~~~p~~~a~~g~~ 266 (306)
T 2p4o_A 209 ----V-EQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPD-RSTTI--IAQAEQG-------------VIGSTAVAFGQTE 266 (306)
T ss_dssp ----E-ESCCCSSEEEBTTC-CEEEECBTTCCEEEECTT-CCEEE--EECGGGT-------------CTTEEEEEECCST
T ss_pred ----e-ccCCCCCeEECCCC-CEEEEeCCCCeEEEECCC-CCEEE--Eeecccc-------------cCCceEEEEeccc
Confidence 0 01235678999999 877776678899999975 54310 0111110 2467899998
Q ss_pred CCCCEEEEe
Q 014005 337 NDGQHLLSR 345 (432)
Q Consensus 337 ~dg~~l~s~ 345 (432)
||++.|...
T Consensus 267 ~d~~~LyVt 275 (306)
T 2p4o_A 267 GDCTAIYVV 275 (306)
T ss_dssp TTTTEEEEE
T ss_pred CCCCEEEEE
Confidence 887766554
No 247
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.36 E-value=0.00031 Score=63.98 Aligned_cols=182 Identities=10% Similarity=0.054 Sum_probs=96.7
Q ss_pred CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccc
Q 014005 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV 205 (432)
Q Consensus 126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~ 205 (432)
++..++.++.++.|..+|..+++..-...... .+..... ..+..++.+.. ++.+..+|..
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~--------------~~~~~p~-~~~~~v~v~~~--~g~l~~~d~~--- 161 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG--------------EALSRPV-VSDGLVLIHTS--NGQLQALNEA--- 161 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSS--------------CCCSCCE-EETTEEEEECT--TSEEEEEETT---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC--------------ceEcCCE-EECCEEEEEcC--CCeEEEEECC---
Confidence 45678888889999999999887543322211 1110000 11234444444 7788888887
Q ss_pred cceeeEEeecCCCCCe-----eEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc---e-EEEEE
Q 014005 206 HARCQKVYPHAHDFNI-----NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV---I-TSAEF 275 (432)
Q Consensus 206 ~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~---v-~~~~~ 275 (432)
+++.+..+ ....... ...... +..++.+ .++.+..+|.+ +++.................. + .....
T Consensus 162 tG~~~W~~-~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~ 237 (376)
T 3q7m_A 162 DGAVKWTV-NLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLME-QGQMIWQQRISQATGSTEIDRLSDVDTTPVV 237 (376)
T ss_dssp TCCEEEEE-ECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETT-TCCEEEEEECCC-----------CCCCCCEE
T ss_pred CCcEEEEE-eCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECC-CCcEEEEEecccCCCCcccccccccCCCcEE
Confidence 55555554 1111110 111222 3467777 89999999998 565554442211000000000 0 01111
Q ss_pred cCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEe
Q 014005 276 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFR 354 (432)
Q Consensus 276 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd 354 (432)
.+ ..+..++.++.+..+|.++++. +..... .....+... +..|..+ .++.+..+|
T Consensus 238 --~~-~~v~~~~~~g~l~~~d~~tG~~----~w~~~~---------------~~~~~~~~~--~~~l~~~~~~g~l~~~d 293 (376)
T 3q7m_A 238 --VN-GVVFALAYNGNLTALDLRSGQI----MWKREL---------------GSVNDFIVD--GNRIYLVDQNDRVMALT 293 (376)
T ss_dssp --ET-TEEEEECTTSCEEEEETTTCCE----EEEECC---------------CCEEEEEEE--TTEEEEEETTCCEEEEE
T ss_pred --EC-CEEEEEecCcEEEEEECCCCcE----EeeccC---------------CCCCCceEE--CCEEEEEcCCCeEEEEE
Confidence 13 4667778899999999998875 222222 123334333 4445444 458999999
Q ss_pred c
Q 014005 355 Y 355 (432)
Q Consensus 355 ~ 355 (432)
.
T Consensus 294 ~ 294 (376)
T 3q7m_A 294 I 294 (376)
T ss_dssp T
T ss_pred C
Confidence 8
No 248
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.33 E-value=7.1e-05 Score=73.87 Aligned_cols=191 Identities=8% Similarity=-0.038 Sum_probs=110.0
Q ss_pred eEEEEEEcCCCCEEEEEeCCC-------------------eEEEEEccCcceeeeeecCCCCcccccccccccccccccc
Q 014005 117 NRVRWCAAPNGSMFILSTNDK-------------------TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH 177 (432)
Q Consensus 117 ~~l~~~~s~~~~~l~s~~~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 177 (432)
..+++ ++++.+++.+..++ .|..+|..+++..-......+.... .........+.
T Consensus 246 ~~~~~--d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd----~~~~~~p~l~~ 319 (677)
T 1kb0_A 246 DSMTF--DAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWD----YTSTQPMILAD 319 (677)
T ss_dssp SCEEE--ETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC----CCCCSCCEEEE
T ss_pred cceeE--cCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccc----cccCCCcEEEe
Confidence 35677 77888888876653 5999999998855443332221000 00000000011
Q ss_pred CCCCC---cceecceeeccceEEEEeecccccceeeEEeecCCC---------CC-------------------------
Q 014005 178 NPPSF---AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHD---------FN------------------------- 220 (432)
Q Consensus 178 ~~~~~---~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~---------~~------------------------- 220 (432)
...++ ..++.+.. +|.+.++|.. +++.+..+..... +.
T Consensus 320 ~~~dG~~~~~l~~~~~--~G~l~~lD~~---tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~ 394 (677)
T 1kb0_A 320 IKIAGKPRKVILHAPK--NGFFFVLDRT---NGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN 394 (677)
T ss_dssp EEETTEEEEEEEECCT--TSEEEEEETT---TCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC
T ss_pred cccCCcEeeEEEEECC--CCEEEEEECC---CCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccC
Confidence 11133 34555555 8899999987 5555544311110 00
Q ss_pred eeEEEeCCCCCEEEEE-cC-------------------------------------------CeEEEEeCCCCCceeeEe
Q 014005 221 INSISNNSDCETFVSA-DD-------------------------------------------LRINLWNLEISDQCFNIV 256 (432)
Q Consensus 221 i~~~~~~~~~~~l~~~-~d-------------------------------------------~~i~lwd~~~~~~~~~~~ 256 (432)
-..++++|++..+.+. .+ +.|..||+. +++.+..+
T Consensus 395 w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~-tG~~~W~~ 473 (677)
T 1kb0_A 395 WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPV-AQKAAWSV 473 (677)
T ss_dssp SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETT-TTEEEEEE
T ss_pred CCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCC-CCcEEeec
Confidence 0256888888887765 32 678999998 56655544
Q ss_pred ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc
Q 014005 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (432)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s 336 (432)
. +...+....+...+ .+++.++.||.+++||.++|+. +..+... . .....-+.+.
T Consensus 474 ~--------~~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~tG~~----lw~~~~~-~-----------~~~~~p~~y~ 528 (677)
T 1kb0_A 474 E--------HVSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEK----LWEAPTG-T-----------GVVAAPSTYM 528 (677)
T ss_dssp E--------ESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCE----EEEEECS-S-----------CCCSCCEEEE
T ss_pred C--------CCCCCcCcceEeCC-CEEEEECCCCcEEEEECCCCce----eeeeeCC-C-----------CcccCCEEEE
Confidence 1 12223344566666 7788899999999999999987 4555531 0 1223346677
Q ss_pred CCCC-EEEE
Q 014005 337 NDGQ-HLLS 344 (432)
Q Consensus 337 ~dg~-~l~s 344 (432)
.+|+ |++.
T Consensus 529 ~~G~~~v~~ 537 (677)
T 1kb0_A 529 VDGRQYVSV 537 (677)
T ss_dssp ETTEEEEEE
T ss_pred eCCEEEEEE
Confidence 8886 4444
No 249
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.33 E-value=7.5e-05 Score=74.79 Aligned_cols=198 Identities=9% Similarity=0.052 Sum_probs=111.6
Q ss_pred cEEEEEEc-CCCCEEEEecc-----cceEEEEEecCC-cCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005 34 IVSAIEFD-KTGDYLAVGDR-----GGRVILFETVGG-KNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (432)
Q Consensus 34 ~V~~~~fs-p~g~~l~t~~~-----dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 106 (432)
.+...+|| |||++||.+.. ..+|+++|++++ +.+. ..+ .
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--------------------------~~~---~----- 220 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--------------------------DKV---S----- 220 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--------------------------CCE---E-----
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--------------------------ccc---c-----
Confidence 57889999 99999885432 235999999887 5220 001 0
Q ss_pred cchhhhhcceeEEEEEEcCCCCEEEEEeCC-----CeEEEEEccCccee--eeeecCCCCccccccccccccccccccCC
Q 014005 107 LKSLEIEEKINRVRWCAAPNGSMFILSTND-----KTIKLWKVRDQKVK--KIKEMDHFPFVSSENTLLAEKNFMNEHNP 179 (432)
Q Consensus 107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 179 (432)
.....+.| +||++.|+....| ..|.++++.+++.. .+..... . .....+.|+
T Consensus 221 -------~~~~~~~W--spDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~-~-----------~~~~~~~~S 279 (751)
T 2xe4_A 221 -------GTNGEIVW--GPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHN-P-----------LFSAFMYKA 279 (751)
T ss_dssp -------EECSCCEE--CSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCC-T-----------TCEEEEEEC
T ss_pred -------CceeeEEE--ecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCC-C-----------ceEEEEEEC
Confidence 22346789 8999888877665 36788888766422 2211110 1 234567899
Q ss_pred CCCcceecceeec-cceEEEEeeccccccee-eEEeecCCCCCeeEEEeCCCCCEEEEE-cC--C--eEEEEeCCCCCce
Q 014005 180 PSFAHGYHLEWTE-NMATKIANVGNSVHARC-QKVYPHAHDFNINSISNNSDCETFVSA-DD--L--RINLWNLEISDQC 252 (432)
Q Consensus 180 ~~~~~~~~~~~~~-~~~v~i~d~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d--~--~i~lwd~~~~~~~ 252 (432)
+++++++...... ...+.++|+... .... ++.+.........++.|+.++.+++.+ .+ + .|..+|+...+..
T Consensus 280 pDg~~l~~~~~~~~~~~l~~~d~~~~-~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~ 358 (751)
T 2xe4_A 280 ADTNTLCIGSQSPETAEVHLLDLRKG-NAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDW 358 (751)
T ss_dssp TTSSEEEEEEECSSCEEEEEEESSSC-TTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCC
T ss_pred CCCCEEEEEecCCCCceEEEEECCCC-CCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccc
Confidence 9999887765422 457778887642 1122 122313344455566655444444555 43 3 5666666521111
Q ss_pred ee-EeecCCCCcCCCCc--ceEEEEEcCCCCcEEEEEeCCCeEE--EEEc
Q 014005 253 FN-IVDMKPSNMDDLTE--VITSAEFHPIYCNLLAYSSSRGFVR--LVDM 297 (432)
Q Consensus 253 ~~-~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~i~--iwd~ 297 (432)
.. .+ .+.. .+..+.+. +..++++...++..+ ++|+
T Consensus 359 ~~~li--------~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 359 SHVLV--------DHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp CCEEE--------CCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred eeeEE--------CCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence 11 22 2222 34555554 436777777888644 5554
No 250
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.32 E-value=0.00027 Score=59.21 Aligned_cols=188 Identities=9% Similarity=0.014 Sum_probs=115.5
Q ss_pred CCcEEEEEEcCCCCEEEEeccc--ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRG--GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
......+.|++ +.++.+.+.+ ..|+.+|+++++.. ....-.
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~---------------------------~~~~l~--------- 62 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRIL---------------------------QRAEVP--------- 62 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEE---------------------------EEEECC---------
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEE---------------------------EEEeCC---------
Confidence 34577899987 5666666664 48999999998743 222211
Q ss_pred hhhhcce--eEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 110 LEIEEKI--NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 110 ~~~~~~v--~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
... ..++. . +++.+...-.++.+.++|..+.+.......... ...+.+++..++.
T Consensus 63 ----~~~fgeGi~~--~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~----------------Gwglt~dg~~L~v 119 (243)
T 3mbr_X 63 ----PPYFGAGIVA--W-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGE----------------GWALTSDDSHLYM 119 (243)
T ss_dssp ----TTCCEEEEEE--E-TTEEEEEESSSSEEEEEETTTTEEEEEEECSSC----------------CCEEEECSSCEEE
T ss_pred ----CCcceeEEEE--e-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC----------------ceEEeeCCCEEEE
Confidence 222 23444 2 234444556789999999998875544433221 1223345555555
Q ss_pred ceeeccceEEEEeecccccceeeEEeecC-C---CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYPHA-H---DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~-~---~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~ 262 (432)
+.. ++.+.++|.. +.+.++.+.-+ + -..++.+.+. +|+.++.. .+..|.+.|.+ +++.+..+++....
T Consensus 120 Sdg--s~~l~~iDp~---t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~-tG~V~~~idl~~l~ 192 (243)
T 3mbr_X 120 SDG--TAVIRKLDPD---TLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPA-SGKVVAWIDLQALV 192 (243)
T ss_dssp ECS--SSEEEEECTT---TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTT-TCBEEEEEECGGGS
T ss_pred ECC--CCeEEEEeCC---CCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECC-CCCEEEEEECCcCc
Confidence 543 6789999988 44555544221 1 1345666665 67666666 78899999999 78888888754321
Q ss_pred c------CCCCcceEEEEEcCCCCcEEEEE
Q 014005 263 M------DDLTEVITSAEFHPIYCNLLAYS 286 (432)
Q Consensus 263 ~------~~~~~~v~~~~~~p~~~~~l~~~ 286 (432)
- .......+.|+++|++.+++++|
T Consensus 193 ~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 193 PDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred cccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 1 11234679999999884555554
No 251
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.23 E-value=0.0016 Score=55.31 Aligned_cols=211 Identities=8% Similarity=0.059 Sum_probs=126.4
Q ss_pred CcEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeee--ecCCccccccch
Q 014005 33 DIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF--QSHEPEFDYLKS 109 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~h~~~~~~~~~ 109 (432)
+.+..++|+|+++.| ++...++.|...|.. ++.. ..+ .+.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~---------------------------~~i~l~g~--------- 69 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLI---------------------------RTIPLDFV--------- 69 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEE---------------------------EEEECSSC---------
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEE---------------------------EEEecCCC---------
Confidence 579999999987655 456677788887876 4322 222 221
Q ss_pred hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcce-eeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
.....|++ .+++.++++.-.++.+.++++..... ......... +.....+.....+++++.+..+...
T Consensus 70 ----~D~EGIa~--~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~-----~~~~~~N~g~EGLA~d~~~~~L~va 138 (255)
T 3qqz_A 70 ----KDLETIEY--IGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIP-----LQESPTNCGFEGLAYSRQDHTFWFF 138 (255)
T ss_dssp ----SSEEEEEE--CSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECC-----CSSCCCSSCCEEEEEETTTTEEEEE
T ss_pred ----CChHHeEE--eCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccc-----cccccccCCcceEEEeCCCCEEEEE
Confidence 34667888 77887767666778899998865431 111111100 0011235678899999998777776
Q ss_pred eeeccceEEEEeecccccceeeEEee------cCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCCCCCceeeEeecCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYP------HAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~ 260 (432)
.. .....+|.+........+.... ......+.+++++|.. ++++.+ .+..+..+|.+ ++....+.+.+
T Consensus 139 ~E--~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~ 214 (255)
T 3qqz_A 139 KE--KNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTK 214 (255)
T ss_dssp EE--SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECST
T ss_pred EC--cCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCC
Confidence 55 3334455543211111222220 1234467899999964 455556 78899999988 55666664443
Q ss_pred CC--cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005 261 SN--MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (432)
Q Consensus 261 ~~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~ 297 (432)
.. +...-...-.|+|+++| ++.++ ++.+.++.+.-
T Consensus 215 g~~~l~~~~~qpEGia~d~~G-~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 215 GSRGLSHNIKQAEGVAMDASG-NIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp TGGGCSSCCCSEEEEEECTTC-CEEEE-ETTTEEEEEEC
T ss_pred ccCCcccccCCCCeeEECCCC-CEEEE-cCCceEEEEEe
Confidence 21 11122357899999999 75554 66677666653
No 252
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.21 E-value=0.00035 Score=62.11 Aligned_cols=215 Identities=7% Similarity=-0.018 Sum_probs=119.2
Q ss_pred ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCc--ccc----ccccccccccccccCCC-CCcceec
Q 014005 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF--VSS----ENTLLAEKNFMNEHNPP-SFAHGYH 187 (432)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~i~~~~~~~-~~~~~~~ 187 (432)
...+++| +++++++.++..++.|..|+..++....+........ .|. ............+++.+ ++...+
T Consensus 20 ~p~~i~~--d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v- 96 (322)
T 2fp8_A 20 APNSFTF--DSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI- 96 (322)
T ss_dssp CCCCEEC--CTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE-
T ss_pred CceEEEE--cCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE-
Confidence 3457888 8888878888888999999987765443321110000 000 00000012355677776 444333
Q ss_pred ceeeccceEEEEeecccccceeeEEee---c-CCCCCeeEEEeCC-CCCEEEEE-c-----------------CCeEEEE
Q 014005 188 LEWTENMATKIANVGNSVHARCQKVYP---H-AHDFNINSISNNS-DCETFVSA-D-----------------DLRINLW 244 (432)
Q Consensus 188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~---~-~~~~~i~~~~~~~-~~~~l~~~-~-----------------d~~i~lw 244 (432)
+.. .+.+..+|... +. ++.+. . ......+.+++.+ +|+..++- . ++.|..+
T Consensus 97 ~d~--~~~i~~~d~~~---g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 97 VDC--YYHLSVVGSEG---GH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp EET--TTEEEEECTTC---EE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred EEC--CCCEEEEeCCC---CE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence 322 33466666542 21 11220 1 1123578899999 89776664 3 2668888
Q ss_pred eCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEE-eCCCeEEEEEccccccccccceeecccccccCCccce
Q 014005 245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (432)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~ 323 (432)
|.. ++...... ......+.++++|++ +.|..+ ..++.|..|++...... . ...+...
T Consensus 171 d~~-~~~~~~~~--------~~~~~p~gia~~~dg-~~lyv~d~~~~~I~~~~~~~~~~~-~-~~~~~~~---------- 228 (322)
T 2fp8_A 171 DPS-TKETTLLL--------KELHVPGGAEVSADS-SFVLVAEFLSHQIVKYWLEGPKKG-T-AEVLVKI---------- 228 (322)
T ss_dssp ETT-TTEEEEEE--------EEESCCCEEEECTTS-SEEEEEEGGGTEEEEEESSSTTTT-C-EEEEEEC----------
T ss_pred eCC-CCEEEEec--------cCCccCcceEECCCC-CEEEEEeCCCCeEEEEECCCCcCC-c-cceEEeC----------
Confidence 876 33322111 111235679999998 755544 56689999998753210 0 1222110
Q ss_pred eeeecceeEEEEcCCCCEEEEe-e----------CCeEEEEec--CcceeEeec
Q 014005 324 TEIIASISDIKFANDGQHLLSR-D----------YMNLKVFRY--EPVMTLSFC 364 (432)
Q Consensus 324 ~~~~~~v~~~~~s~dg~~l~s~-~----------~~~i~iwd~--~~~~~~~~~ 364 (432)
.+ ...++++++|++.++. . .+.|..+|. +.+..+...
T Consensus 229 ---~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~ 278 (322)
T 2fp8_A 229 ---PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLP 278 (322)
T ss_dssp ---SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECC
T ss_pred ---CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECC
Confidence 13 6778999999877664 3 256778887 445555443
No 253
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.19 E-value=0.0012 Score=60.44 Aligned_cols=196 Identities=9% Similarity=-0.008 Sum_probs=112.8
Q ss_pred cceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 114 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
.....++| ++.+..|+.+ ...+.|..+++.++....+..... .....+++++.+..++.... .
T Consensus 116 ~~~~gl~~--d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~-------------~~p~glavd~~~g~lY~~d~-~ 179 (386)
T 3v65_B 116 ENAIALDF--HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL-------------ESPGGLAVDWVHDKLYWTDS-G 179 (386)
T ss_dssp SCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC-------------SCCCCEEEETTTTEEEEEET-T
T ss_pred CccEEEEE--ecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC-------------CCccEEEEEeCCCeEEEEcC-C
Confidence 45788999 6555555444 567889999988765444322111 23355666654444333221 1
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cC-CeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
.+.|.+.++... ....+..........++++|.+..|..+ .+ +.|..++++ ........ ...-..
T Consensus 180 ~~~I~~~~~dg~----~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~-------~~~~~~ 247 (386)
T 3v65_B 180 TSRIEVANLDGA----HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRIIA-------DTHLFW 247 (386)
T ss_dssp TTEEEECBTTSC----SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEE-------CSSCSC
T ss_pred CCeEEEEeCCCC----ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC-CCCcEEEE-------ECCCCC
Confidence 456777766522 2222213444678899999977766655 44 788888887 22222222 222345
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCC
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYM 348 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~ 348 (432)
.+.++++|++.++.++-+..+.|..+|+..... ...+... .....++++. .+.+..+. ..+
T Consensus 248 PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~----~~~~~~~-------------~~~P~giav~-~~~ly~td~~~~ 309 (386)
T 3v65_B 248 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR----KAVISQG-------------LPHPFAITVF-EDSLYWTDWHTK 309 (386)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC----EEEECSS-------------CSSEEEEEEE-TTEEEEEETTTT
T ss_pred eeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee----EEEEECC-------------CCCceEEEEE-CCEEEEeeCCCC
Confidence 789999987734444445667899999874332 1222221 2345677874 34444443 338
Q ss_pred eEEEEec
Q 014005 349 NLKVFRY 355 (432)
Q Consensus 349 ~i~iwd~ 355 (432)
.|..+|.
T Consensus 310 ~V~~~~~ 316 (386)
T 3v65_B 310 SINSANK 316 (386)
T ss_dssp EEEEEET
T ss_pred eEEEEEC
Confidence 8888884
No 254
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.19 E-value=0.00022 Score=65.02 Aligned_cols=150 Identities=8% Similarity=0.062 Sum_probs=82.2
Q ss_pred CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC--CCcceecceeeccceEEEEeeccc
Q 014005 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP--SFAHGYHLEWTENMATKIANVGNS 204 (432)
Q Consensus 127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~v~i~d~~~~ 204 (432)
+..++.++.++.+..+|..+++............. ..-..+..+...| .+..++.+.. ++.+..+|..
T Consensus 188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~------~~~~~~~~~~~~p~~~~~~v~~~~~--~g~l~~~d~~-- 257 (376)
T 3q7m_A 188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS------TEIDRLSDVDTTPVVVNGVVFALAY--NGNLTALDLR-- 257 (376)
T ss_dssp TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------------CCCCCCEEETTEEEEECT--TSCEEEEETT--
T ss_pred CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC------cccccccccCCCcEEECCEEEEEec--CcEEEEEECC--
Confidence 34677788899999999988875433322111000 0000000111111 1233444443 7788888887
Q ss_pred ccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEE
Q 014005 205 VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 283 (432)
Q Consensus 205 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 283 (432)
+++.+... . ......+.. ++..+..+ .++.+..+|.+ +++.....+. .....+...... + ..|
T Consensus 258 -tG~~~w~~-~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~-tG~~~w~~~~------~~~~~~~~~~~~--~-~~l 321 (376)
T 3q7m_A 258 -SGQIMWKR-E--LGSVNDFIV--DGNRIYLVDQNDRVMALTID-GGVTLWTQSD------LLHRLLTSPVLY--N-GNL 321 (376)
T ss_dssp -TCCEEEEE-C--CCCEEEEEE--ETTEEEEEETTCCEEEEETT-TCCEEEEECT------TTTSCCCCCEEE--T-TEE
T ss_pred -CCcEEeec-c--CCCCCCceE--ECCEEEEEcCCCeEEEEECC-CCcEEEeecc------cCCCcccCCEEE--C-CEE
Confidence 55555444 1 223344444 34566666 88999999998 5555443310 111112222222 3 567
Q ss_pred EEEeCCCeEEEEEcccccc
Q 014005 284 AYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 284 ~~~~~dg~i~iwd~~~~~~ 302 (432)
+.++.+|.+.++|.++++.
T Consensus 322 ~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 322 VVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp EEECTTSEEEEEETTTCCE
T ss_pred EEEeCCCeEEEEECCCCcE
Confidence 7888999999999999886
No 255
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.18 E-value=0.0022 Score=59.55 Aligned_cols=252 Identities=10% Similarity=-0.013 Sum_probs=133.2
Q ss_pred cEEEEEEcCC--CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 34 IVSAIEFDKT--GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 34 ~V~~~~fsp~--g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
.-..++|+|+ +..|..+...+.|+.++..++.. ..+....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v----------------------------~~~~~~~---------- 181 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV----------------------------DIKTTNI---------- 181 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEE----------------------------EEECCCC----------
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEE----------------------------EEeecCC----------
Confidence 4568899985 33454444447899999866542 1222222
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCC----e-EEEEEccCcce--eeeeecCCCCccccccccccccccccccCCC-CCc
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDK----T-IKLWKVRDQKV--KKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFA 183 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~----~-i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 183 (432)
.....+++ +++++ |+.+...+ . +...+...+.. ..+..+ .....+++++ ++.
T Consensus 182 --~~P~giav--d~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~---------------~~P~giavd~~~G~ 241 (433)
T 4hw6_A 182 --GQCADVNF--TLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCNA---------------RGAKTCAVHPQNGK 241 (433)
T ss_dssp --SCEEEEEE--CTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEEC---------------SSBCCCEECTTTCC
T ss_pred --CCccEEEE--CCCCC-EEEEcCCCCcccceEEEEECCCCeecccccccc---------------CCCCEEEEeCCCCe
Confidence 56789999 89998 44443321 2 33333322211 111111 3345677788 444
Q ss_pred ceecceeeccceEEEEeeccccccee-eEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCcee---eEee
Q 014005 184 HGYHLEWTENMATKIANVGNSVHARC-QKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCF---NIVD 257 (432)
Q Consensus 184 ~~~~~~~~~~~~v~i~d~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~---~~~~ 257 (432)
..++... ++.|..++.. .+.. ...+..+.......++++|+++.|..+ ..+.|+.++.+.....+ ..+-
T Consensus 242 lyv~d~~--~~~V~~~d~~---~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~a 316 (433)
T 4hw6_A 242 IYYTRYH--HAMISSYDPA---TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVC 316 (433)
T ss_dssp EEECBTT--CSEEEEECTT---TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEE
T ss_pred EEEEECC--CCEEEEEECC---CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEE
Confidence 4434333 5677777776 2322 122212223334579999999966655 67899998876221111 1110
Q ss_pred cCCC--Cc------CCCCcceEEEEE---------cCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccc--ccC
Q 014005 258 MKPS--NM------DDLTEVITSAEF---------HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE--SHG 318 (432)
Q Consensus 258 ~~~~--~~------~~~~~~v~~~~~---------~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~--~~~ 318 (432)
-... .. ...-.....+++ .+++ .+.++-...+.|+.++. +|.. ..+.+... ...
T Consensus 317 g~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~-~G~v-----~t~~G~g~~~~~G 389 (433)
T 4hw6_A 317 GQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTP-EGRV-----TTYAGRGNSREWG 389 (433)
T ss_dssp ECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEETTTTEEEEECT-TSEE-----EEEECCCTTCSSC
T ss_pred ecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEECCCCEEEEECC-CCCE-----EEEEeCCCCCccc
Confidence 0000 00 011234678999 6776 77766667789999985 4543 44433111 000
Q ss_pred C-cc--ceeeeecceeEEEEc-CCCCEEEEeeC-CeEEEEec
Q 014005 319 S-KS--FFTEIIASISDIKFA-NDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 319 ~-~~--~~~~~~~~v~~~~~s-~dg~~l~s~~~-~~i~iwd~ 355 (432)
. .. ...........++++ ++|.++++-.. ++|+.+++
T Consensus 390 ~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 390 YVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp CBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred cCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 0 00 000012457789999 66766655333 78887765
No 256
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.18 E-value=8.6e-05 Score=70.28 Aligned_cols=198 Identities=9% Similarity=0.025 Sum_probs=115.7
Q ss_pred CCCEEEEEeC-CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccC-C-CCCcceeccee------------
Q 014005 126 NGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN-P-PSFAHGYHLEW------------ 190 (432)
Q Consensus 126 ~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~~~~~~~------------ 190 (432)
||++++.+.. ++.|.+.|+.+.++..+..+... .....+++ + |++.+++.+..
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g------------~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l 167 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA------------KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNM 167 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC------------CSEEEEEECCSSBCSEEEEEECSCEESSCSSSST
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC------------CCCcceeeeecCCCcEEEEecccccccCCCCccc
Confidence 6777777654 56799999999886665444321 22444454 3 66666655531
Q ss_pred ----eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCC---------------eEEEEeCCCC-
Q 014005 191 ----TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL---------------RINLWNLEIS- 249 (432)
Q Consensus 191 ----~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~---------------~i~lwd~~~~- 249 (432)
..++.+.+.|.. +.+....+.-+ +....++++|+|+++.+. .+. .+.+.|....
T Consensus 168 ~~~~~~~~~vtvID~~---t~~v~~qI~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~ 242 (595)
T 1fwx_A 168 EDVANYVNVFTAVDAD---KWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 242 (595)
T ss_dssp TCGGGEEEEEEEEETT---TTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred ccccccCceEEEEECC---CCeEEEEEEeC--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence 115688899988 55666655222 245678899999998876 332 2444443200
Q ss_pred -----C-----ceeeEeecCCC--Cc----CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccc------c--c
Q 014005 250 -----D-----QCFNIVDMKPS--NM----DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC------D--H 305 (432)
Q Consensus 250 -----~-----~~~~~~~~~~~--~~----~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~------~--~ 305 (432)
+ ..+.+++.... .. -.-.....++.++|||..+++++..+.+|.++|+.+.+.. . .
T Consensus 243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~ 322 (595)
T 1fwx_A 243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 322 (595)
T ss_dssp HHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGG
T ss_pred EeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccc
Confidence 0 01222322210 00 0111235678999999334444557889999999965310 0 0
Q ss_pred cceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe--eCCeEEEEec
Q 014005 306 SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--DYMNLKVFRY 355 (432)
Q Consensus 306 ~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~--~~~~i~iwd~ 355 (432)
......- ......++|+||| ++.+. -++.|..||+
T Consensus 323 v~~~v~v--------------G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 323 VVAEPEL--------------GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp EEECCBC--------------CSCEEEEEECTTS-EEEEEETTTTEEEEEEH
T ss_pred eEEEcCC--------------CCCcceEEECCCC-eEEEEEecCCcEEEEEh
Confidence 0111111 3567889999999 66554 3499999999
No 257
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.18 E-value=0.0014 Score=60.78 Aligned_cols=252 Identities=8% Similarity=0.044 Sum_probs=132.2
Q ss_pred cEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005 34 IVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (432)
Q Consensus 34 ~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 112 (432)
....|+++| ++..|..+...+.|+.+|++++.. ..+....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v----------------------------~~~~~~~----------- 178 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV----------------------------STVYSGL----------- 178 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE----------------------------EEEECCC-----------
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE----------------------------EEEecCC-----------
Confidence 456789998 455565555557888888876542 1222222
Q ss_pred hcceeEEEEEEcCCCCEEEEEeCC----C-eEEEEEccCccee---eeeecCCCCccccccccccccccccccCCC-CCc
Q 014005 113 EEKINRVRWCAAPNGSMFILSTND----K-TIKLWKVRDQKVK---KIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFA 183 (432)
Q Consensus 113 ~~~v~~l~~~~s~~~~~l~s~~~d----~-~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 183 (432)
.....++| ++++++|+.+... . .+...+. .+... .+..+ .....++++| ++.
T Consensus 179 -~~P~~ia~--d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~---------------~~p~giavdp~~g~ 239 (430)
T 3tc9_A 179 -SKVRTICW--THEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKG---------------QNCNGAETHPINGE 239 (430)
T ss_dssp -SCEEEEEE--CTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEEC---------------SSCCCEEECTTTCC
T ss_pred -CCcceEEE--eCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccC---------------CCceEEEEeCCCCE
Confidence 56788999 8999966666542 2 2333343 33322 11111 3345677888 444
Q ss_pred ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCcee---eEeec
Q 014005 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCF---NIVDM 258 (432)
Q Consensus 184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~---~~~~~ 258 (432)
..++-.. .+.|..++... ...............+.++++|++++|..+ ..+.|..++.+.....+ ..+.-
T Consensus 240 lyv~d~~--~~~V~~~~~~~---~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag 314 (430)
T 3tc9_A 240 LYFNSWN--AGQVFRYDFTT---QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCG 314 (430)
T ss_dssp EEEEETT--TTEEEEEETTT---TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEE
T ss_pred EEEEECC--CCEEEEEECCC---CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEec
Confidence 3333333 56788888763 222122212233467899999999965555 68899998876221111 11100
Q ss_pred CCC--Cc------CCCCcceE-EEEEc--------CCCCcEEEEEeCCCeEEEEEccccccccccceeeccccc-ccCC-
Q 014005 259 KPS--NM------DDLTEVIT-SAEFH--------PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE-SHGS- 319 (432)
Q Consensus 259 ~~~--~~------~~~~~~v~-~~~~~--------p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~-~~~~- 319 (432)
... .. ...-.... .++.. +++ .+.++=...+.|+.++. +|.. ..+.+... ....
T Consensus 315 ~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~-~G~v-----~~~~g~g~~~~~G~ 387 (430)
T 3tc9_A 315 QQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTP-QGRV-----TTFAGRGSNGTSGY 387 (430)
T ss_dssp CTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECT-TSEE-----EEEEECCTTSSSSC
T ss_pred cCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECC-CCcE-----EEEEeCCCCCCCcc
Confidence 000 00 00111233 45553 345 55555556678888883 4543 33332100 0000
Q ss_pred -cc--ceeeeecceeEEEEcCC-CCEEEEeeC-CeEEEEec
Q 014005 320 -KS--FFTEIIASISDIKFAND-GQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 320 -~~--~~~~~~~~v~~~~~s~d-g~~l~s~~~-~~i~iwd~ 355 (432)
.. ...........++++|+ |.++++-.. ++|+.+++
T Consensus 388 ~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 388 NDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp BCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred cCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 00 00001235789999995 555555333 78887764
No 258
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.18 E-value=0.0015 Score=58.81 Aligned_cols=196 Identities=9% Similarity=0.003 Sum_probs=112.7
Q ss_pred cceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 114 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
.....++| ++.+..|+.+ ...+.|..+++.++....+..... .....+++++.+..++.... .
T Consensus 73 ~~~~~l~~--d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~-------------~~p~glavd~~~g~ly~~d~-~ 136 (349)
T 3v64_C 73 ENAIALDF--HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL-------------ESPGGLAVDWVHDKLYWTDS-G 136 (349)
T ss_dssp SCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-------------SCCCEEEEETTTTEEEEEET-T
T ss_pred CceEEEEE--eccccEEEEEeccCCceEEEecCCCCceEEEeCCC-------------CCccEEEEecCCCeEEEEcC-C
Confidence 45788999 6555555544 567889999988765444322111 23355666654444433221 1
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cC-CeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
.+.|.+.+++.. ....+..........++++|.+..+..+ .+ +.|...+++ +.....+ ....-..
T Consensus 137 ~~~I~~~~~dG~----~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~------~~~~~~~ 204 (349)
T 3v64_C 137 TSRIEVANLDGA----HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRII------ADTHLFW 204 (349)
T ss_dssp TTEEEEEETTSC----SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEES------CCSSCSC
T ss_pred CCeEEEEcCCCC----ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--CCCcEEE------EECCCCC
Confidence 457777777632 1222213444678899999976666655 44 788888887 3222222 1222345
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCC
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYM 348 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~ 348 (432)
.+.++++|++..+..+-...+.|..+|+..... ...+... .....++++. ++....+- ..+
T Consensus 205 PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~----~~~~~~~-------------~~~P~giav~-~~~ly~td~~~~ 266 (349)
T 3v64_C 205 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR----KAVISQG-------------LPHPFAITVF-EDSLYWTDWHTK 266 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECSS-------------CSSEEEEEEE-TTEEEEEETTTT
T ss_pred cceEEEeCCCCEEEEEECCCCEEEEEeCCCCce----EEEEeCC-------------CCCceEEEEE-CCEEEEecCCCC
Confidence 789999987734444445667899999874332 1222221 2345677774 34344443 338
Q ss_pred eEEEEec
Q 014005 349 NLKVFRY 355 (432)
Q Consensus 349 ~i~iwd~ 355 (432)
.|...|.
T Consensus 267 ~V~~~~~ 273 (349)
T 3v64_C 267 SINSANK 273 (349)
T ss_dssp EEEEEET
T ss_pred eEEEEEc
Confidence 8888873
No 259
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.10 E-value=0.0024 Score=62.93 Aligned_cols=159 Identities=12% Similarity=0.047 Sum_probs=91.3
Q ss_pred CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC--CCcceecceee----ccceEEEEe
Q 014005 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP--SFAHGYHLEWT----ENMATKIAN 200 (432)
Q Consensus 127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~----~~~~v~i~d 200 (432)
+..++.++.|+.|..+|..+++..-........ ....+...| ....++.+... .++.+..+|
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~------------~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D 184 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPA------------KPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYD 184 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTT------------SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCC------------CcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEE
Confidence 457888888999999999998854332221110 000111111 12223332221 157888888
Q ss_pred ecccccceeeEEeecC--C----------------------------CCCeeEEEeCCCCCEEEEE-cCC----------
Q 014005 201 VGNSVHARCQKVYPHA--H----------------------------DFNINSISNNSDCETFVSA-DDL---------- 239 (432)
Q Consensus 201 ~~~~~~~~~~~~~~~~--~----------------------------~~~i~~~~~~~~~~~l~~~-~d~---------- 239 (432)
.. +++.+..+... . ......++++|+...+..+ .++
T Consensus 185 ~~---tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~ 261 (668)
T 1kv9_A 185 AD---TGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSP 261 (668)
T ss_dssp TT---TCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHST
T ss_pred CC---CCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCC
Confidence 87 56666555211 0 0111246788887788877 665
Q ss_pred ---------eEEEEeCCCCCceeeEeecCCCCcCC--CCcceEEEEEcCCCCc---EEEEEeCCCeEEEEEcccccc
Q 014005 240 ---------RINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIYCN---LLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 240 ---------~i~lwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~---~l~~~~~dg~i~iwd~~~~~~ 302 (432)
.|..+|.+ +++....++..+..... ...+.....+..++ + .++.++.+|.++++|.++|++
T Consensus 262 ~~gd~l~~~~v~AlD~~-tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G-~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 262 GGGDNLYLSSILAIRPD-TGKLAWHYQVTPGDSWDFTATQQITLAELNIDG-KPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp TCCCCTTTTEEEEECTT-TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT-EEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCceeeeeEEEEcCC-CCceeeEeecCCCccccccCCCCcEEEEeccCC-cEEEEEEEECCCCEEEEEECCCCCE
Confidence 48999998 67766655332211111 11223333333455 4 688899999999999999986
No 260
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.07 E-value=0.01 Score=59.64 Aligned_cols=243 Identities=12% Similarity=0.106 Sum_probs=142.1
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
...|.++...++|.+ ..|+.++-|..|+..++... .+ ...-....
T Consensus 362 ~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~----------------------~~--~~~~~~~~---------- 406 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAI----------------------YN--KENRELLS---------- 406 (781)
T ss_dssp SSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEE----------------------CC-------CCC----------
T ss_pred CcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEE----------------------Ec--cCCCCCCC----------
Confidence 356999999888874 45565566888886553211 00 00000112
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
..|.++.. .+++.+. .|+.++-+..++..+++......... ....|.++...+++...+ ++.
T Consensus 407 --~~v~~i~~--d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~-----------~~~~v~~i~~d~~g~lwi-gt~- 468 (781)
T 3v9f_A 407 --NSVLCSLK--DSEGNLW-FGTYLGNISYYNTRLKKFQIIELEKN-----------ELLDVRVFYEDKNKKIWI-GTH- 468 (781)
T ss_dssp --SBEEEEEE--CTTSCEE-EEETTEEEEEECSSSCEEEECCSTTT-----------CCCCEEEEEECTTSEEEE-EET-
T ss_pred --cceEEEEE--CCCCCEE-EEeccCCEEEEcCCCCcEEEeccCCC-----------CCCeEEEEEECCCCCEEE-EEC-
Confidence 56888887 6677554 46666678888887776544321111 124566776666665333 332
Q ss_pred ccceEEEEeecccccceeeEEeecCC-----CCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 192 ENMATKIANVGNSVHARCQKVYPHAH-----DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
+.+..++... .+..... ... ...|.++...++|++.+...++.+..+|.+ .+ .+..+.. .. .-.
T Consensus 469 --~Gl~~~~~~~---~~~~~~~-~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~-~~-~~~~~~~-~~--~l~ 537 (781)
T 3v9f_A 469 --AGVFVIDLAS---KKVIHHY-DTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPD-MQ-LVRKFNQ-YE--GFC 537 (781)
T ss_dssp --TEEEEEESSS---SSCCEEE-CTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTT-CC-EEEEECT-TT--TCS
T ss_pred --CceEEEeCCC---CeEEecc-cCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCC-CC-eEEEccC-CC--CCC
Confidence 3566777652 2222221 111 357899999999976665554557778887 33 3333311 11 112
Q ss_pred CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~ 346 (432)
...|.++..+++| .+.+ |+.+|.+..||..+++. ..+... ... ....|.++...++|++.+++.
T Consensus 538 ~~~i~~i~~d~~g-~lWi-~T~~Glv~~~d~~~~~~-----~~~~~~-~gl--------~~~~i~~i~~d~~g~lW~~t~ 601 (781)
T 3v9f_A 538 SNTINQIYRSSKG-QMWL-ATGEGLVCFPSARNFDY-----QVFQRK-EGL--------PNTHIRAISEDKNGNIWASTN 601 (781)
T ss_dssp CSCEEEEEECTTS-CEEE-EETTEEEEESCTTTCCC-----EEECGG-GTC--------SCCCCCEEEECSSSCEEEECS
T ss_pred CCeeEEEEECCCC-CEEE-EECCCceEEECCCCCcE-----EEcccc-CCC--------CCceEEEEEECCCCCEEEEcC
Confidence 4578999999988 6555 44566658899876553 344321 000 024678899999998877765
Q ss_pred CCeEEEEec
Q 014005 347 YMNLKVFRY 355 (432)
Q Consensus 347 ~~~i~iwd~ 355 (432)
.| |..+|.
T Consensus 602 ~G-l~~~~~ 609 (781)
T 3v9f_A 602 TG-ISCYIT 609 (781)
T ss_dssp SC-EEEEET
T ss_pred Cc-eEEEEC
Confidence 45 667777
No 261
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.05 E-value=0.015 Score=58.74 Aligned_cols=251 Identities=11% Similarity=0.073 Sum_probs=146.6
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc-hh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK-SL 110 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~-~~ 110 (432)
...|.++..+++|.+ ..|+.++-|..|+..+++.. .+.... . + .. .+
T Consensus 356 ~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~----------------------------~~~~~~-~-~-~~~~l 403 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFT----------------------------SYTLQE-D-E-SARGI 403 (795)
T ss_dssp CSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEE----------------------------EECCC---------CC
T ss_pred CCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEE----------------------------EEecCC-C-C-cccCC
Confidence 456999999998874 45677777888887665321 111000 0 0 00 00
Q ss_pred hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
. ...|.++.. .++++.|..|+.++-|..+|..+++........ + ......|.++...+++...+ ++.
T Consensus 404 ~-~~~v~~i~~--d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~--~-------~l~~~~v~~i~~d~~g~lwi-gt~ 470 (795)
T 4a2l_A 404 G-SNNIKAVYV--DEKKSLVYIGTHAGGLSILHRNSGQVENFNQRN--S-------QLVNENVYAILPDGEGNLWL-GTL 470 (795)
T ss_dssp S-CSCEEEEEE--ETTTTEEEEEETTTEEEEEETTTCCEEEECTTT--S-------CCSCSCEEEEEECSSSCEEE-EES
T ss_pred C-CccEEEEEE--cCCCCEEEEEeCcCceeEEeCCCCcEEEeecCC--C-------CcCCCeeEEEEECCCCCEEE-Eec
Confidence 0 156888887 778874667777777999999887755443211 0 01124567777666665333 332
Q ss_pred eccceEEEEeecccccceeeEEeec-----CCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 191 TENMATKIANVGNSVHARCQKVYPH-----AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
+.+..++.. +.+....... -....|.++...++|+..+... +.+..||.+ ++.. .+.........
T Consensus 471 ---~Gl~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~-~~~~--~~~~~~~~~~l 540 (795)
T 4a2l_A 471 ---SALVRFNPE---QRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQE-GLDI--QKASILPVSNV 540 (795)
T ss_dssp ---SCEEEEETT---TTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEE-TTEE--EECCCSCSCGG
T ss_pred ---CceeEEeCC---CCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCC-CCeE--EEecCCCCCCC
Confidence 346677765 3332221100 1235789999999887655446 668889887 3433 22110011112
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~ 345 (432)
....|.++..+++| ++.+ |+.. .+..||..+++. ..+... ... ....|.++...++|++.+++
T Consensus 541 ~~~~i~~i~~d~~g-~lWi-gT~~-Gl~~~d~~~~~~-----~~~~~~-~gl--------~~~~i~~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 541 TKLFTNCIYEASNG-IIWV-GTRE-GFYCFNEKDKQI-----KRYNTT-NGL--------PNNVVYGILEDSFGRLWLST 603 (795)
T ss_dssp GGSCEEEEEECTTS-CEEE-EESS-CEEEEETTTTEE-----EEECGG-GTC--------SCSCEEEEEECTTSCEEEEE
T ss_pred CCCeeEEEEECCCC-CEEE-EeCC-CceeECCCCCcE-----EEeCCC-CCC--------chhheEEEEECCCCCEEEEc
Confidence 34579999999998 6555 4444 578899876542 333220 000 02468889999999877766
Q ss_pred eCCeEEEEec
Q 014005 346 DYMNLKVFRY 355 (432)
Q Consensus 346 ~~~~i~iwd~ 355 (432)
. +-|..||.
T Consensus 604 ~-~Gl~~~~~ 612 (795)
T 4a2l_A 604 N-RGISCFNP 612 (795)
T ss_dssp T-TEEEEEET
T ss_pred C-CceEEEcC
Confidence 4 56777887
No 262
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.04 E-value=0.0041 Score=55.91 Aligned_cols=202 Identities=8% Similarity=0.018 Sum_probs=117.3
Q ss_pred CcEEEEEEcCCCCEEE-EecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 33 DIVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
..+..++|++.+..|. +-...+.|..+++++.... ..+....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~---------------------------~~~~~~~---------- 115 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE---------------------------EVVSTGL---------- 115 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------------------------EEECSSC----------
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCce---------------------------EEEeCCC----------
Confidence 4567888987655554 4445677888887664321 1111111
Q ss_pred hhcceeEEEEEEcCCCC-EEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 112 IEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
.....+++ .+.+. ++++-...+.|.+.++.......+..... .....++++|.+..++....
T Consensus 116 --~~p~glav--d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l-------------~~P~~iavdp~~g~ly~td~ 178 (349)
T 3v64_C 116 --ESPGGLAV--DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL-------------EKPRAIALHPMEGTIYWTDW 178 (349)
T ss_dssp --SCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTC-------------SCEEEEEEETTTTEEEEEEC
T ss_pred --CCccEEEE--ecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCC-------------CCcceEEEecCcCeEEEecc
Confidence 34567888 65444 44555567889999987654333322111 23466777876665554443
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
...+.|...+++. .....+........+.++++|++..|..+ ..+.|..+|++ .......+ .....
T Consensus 179 ~~~~~I~r~~~dG----~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d-G~~~~~~~-------~~~~~ 246 (349)
T 3v64_C 179 GNTPRIEASSMDG----SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD-GSHRKAVI-------SQGLP 246 (349)
T ss_dssp SSSCEEEEEETTS----CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------CSSCS
T ss_pred CCCCEEEEEeCCC----CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC-CCceEEEE-------eCCCC
Confidence 2125666666652 22222212334567899999877777766 57889999988 32222222 22234
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
....+++. .+ .++.+-...+.|..+|..+|+.
T Consensus 247 ~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 247 HPFAITVF-ED-SLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp SEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCS
T ss_pred CceEEEEE-CC-EEEEecCCCCeEEEEEccCCCc
Confidence 56777773 34 5666666777888888666654
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.01 E-value=0.0019 Score=59.00 Aligned_cols=203 Identities=8% Similarity=0.012 Sum_probs=117.6
Q ss_pred CCcEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 32 VDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
......++|++.+..| ++-...+.|..++.++.... ..+....
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~---------------------------~~~~~~~--------- 158 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE---------------------------EVVSTGL--------- 158 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE---------------------------EEECSSC---------
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE---------------------------EEEeCCC---------
Confidence 4457788998765544 44445678888887664311 1111111
Q ss_pred hhhcceeEEEEEEcCCCCE-EEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 111 EIEEKINRVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
.....+++ .+.+.. +++-...+.|.+.++.......+..... .....++++|.+..++...
T Consensus 159 ---~~p~glav--d~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l-------------~~P~giavdp~~g~ly~td 220 (386)
T 3v65_B 159 ---ESPGGLAV--DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL-------------EKPRAIALHPMEGTIYWTD 220 (386)
T ss_dssp ---SCCCCEEE--ETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSC-------------SCEEEEEEETTTTEEEEEE
T ss_pred ---CCccEEEE--EeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCC-------------CCCcEEEEEcCCCeEEEec
Confidence 33456777 554444 4444556788888887554333322111 2346677777666555544
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
....+.|...++.. .....+........+.++++|++..|..+ ..+.|..+|++ .......+ ....
T Consensus 221 ~~~~~~I~r~~~dG----~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~~~-------~~~~ 288 (386)
T 3v65_B 221 WGNTPRIEASSMDG----SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD-GSHRKAVI-------SQGL 288 (386)
T ss_dssp CSSSCEEEEEETTS----CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT-SCSCEEEE-------CSSC
T ss_pred cCCCCEEEEEeCCC----CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC-CCeeEEEE-------ECCC
Confidence 32125666666652 22222213334567899999877777766 57889999987 32222222 2223
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
.....+++. .+ .++.+-...+.|..+|..+|+.
T Consensus 289 ~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 289 PHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp SSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCS
T ss_pred CCceEEEEE-CC-EEEEeeCCCCeEEEEECCCCcc
Confidence 456778883 34 6666666778898888666664
No 264
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.98 E-value=0.0034 Score=55.26 Aligned_cols=202 Identities=10% Similarity=0.051 Sum_probs=112.5
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
.....++| +++++++++-..++.|..||..+.. ....... .....+++.+++..++.... .+
T Consensus 32 ~~pegia~--~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~~~~--------------~~p~gia~~~dG~l~vad~~-~~ 93 (306)
T 2p4o_A 32 TFLENLAS--APDGTIFVTNHEVGEIVSITPDGNQ-QIHATVE--------------GKVSGLAFTSNGDLVATGWN-AD 93 (306)
T ss_dssp CCEEEEEE--CTTSCEEEEETTTTEEEEECTTCCE-EEEEECS--------------SEEEEEEECTTSCEEEEEEC-TT
T ss_pred CCcceEEE--CCCCCEEEEeCCCCeEEEECCCCce-EEEEeCC--------------CCceeEEEcCCCcEEEEecc-CC
Confidence 45678999 8899877776678999999987543 2222211 34667888888875444322 11
Q ss_pred c-eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCc-eeeEeec--CCCCcCCCCc
Q 014005 194 M-ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDM--KPSNMDDLTE 268 (432)
Q Consensus 194 ~-~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~-~~~~~~~--~~~~~~~~~~ 268 (432)
+ .+..++.. +++...............++..+++..+++- .++.|..+|.. .+. .+..... .+......-.
T Consensus 94 ~~~v~~~d~~---~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~-~~~~~v~~~~~~~~~~~~~~~~~ 169 (306)
T 2p4o_A 94 SIPVVSLVKS---DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV-QPSGSIWLEHPMLARSNSESVFP 169 (306)
T ss_dssp SCEEEEEECT---TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT-TTEEEEEEECGGGSCSSTTCCSC
T ss_pred cceEEEEcCC---CCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCC-CCcEeEEEECCccccccccCCCC
Confidence 2 34445544 3333222211222334555655655445555 58888888876 221 1111100 0000011112
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccc-cccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~- 346 (432)
..+.+ +|++..++++-...+.|..+|+.. ++... ...+.. ......++++++|++.++..
T Consensus 170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~--~~~~~~--------------~~~P~gi~vd~dG~l~va~~~ 231 (306)
T 2p4o_A 170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE--PEIFVE--------------QTNIDDFAFDVEGNLYGATHI 231 (306)
T ss_dssp SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCC--CEEEEE--------------SCCCSSEEEBTTCCEEEECBT
T ss_pred cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc--cEEEec--------------cCCCCCeEECCCCCEEEEeCC
Confidence 34555 788733445555678999999874 33210 122211 13467799999998777754
Q ss_pred CCeEEEEec
Q 014005 347 YMNLKVFRY 355 (432)
Q Consensus 347 ~~~i~iwd~ 355 (432)
.+.|.++|.
T Consensus 232 ~~~V~~~~~ 240 (306)
T 2p4o_A 232 YNSVVRIAP 240 (306)
T ss_dssp TCCEEEECT
T ss_pred CCeEEEECC
Confidence 389999987
No 265
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.96 E-value=0.01 Score=59.87 Aligned_cols=257 Identities=11% Similarity=0.069 Sum_probs=145.6
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
...|.++..+++|. |..|+.++-|..++..+.... .+.... . ...+.
T Consensus 309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~----------------------------~~~~~~-~---~~~l~ 355 (795)
T 4a2l_A 309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK----------------------------NIRNIP-Y---KNSLS 355 (795)
T ss_dssp SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE----------------------------EECCCT-T---SSSCS
T ss_pred CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce----------------------------EEcCCC-C---CCCCC
Confidence 35799999999887 445667677888886654311 111000 0 00000
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
...|.++.. .++|. |-.|+.++-|..|+..++...........+ ........|.++...+++..+..|+.
T Consensus 356 -~~~V~~i~~--d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~v~~i~~d~~g~~lWigt~- 425 (795)
T 4a2l_A 356 -DNVVSCIVE--DKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDES-----ARGIGSNNIKAVYVDEKKSLVYIGTH- 425 (795)
T ss_dssp -CSSEEEEEE--CTTSC-EEEEESSSCEEEECTTTCCEEEECCC-----------CCSCSCEEEEEEETTTTEEEEEET-
T ss_pred -CCeeEEEEE--CCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCc-----ccCCCCccEEEEEEcCCCCEEEEEeC-
Confidence 156888888 77775 445677767999998877654432111000 00011245677777667663555554
Q ss_pred ccceEEEEeecccccceeeEEeec----CCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 192 ENMATKIANVGNSVHARCQKVYPH----AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
++.+..+|.. +++..... . .....|.++...++|++.+... +.+..||.+ ++. ...+........-..
T Consensus 426 -~~Gl~~~d~~---~~~~~~~~-~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~-~~~-~~~~~~~~~~~~~~~ 497 (795)
T 4a2l_A 426 -AGGLSILHRN---SGQVENFN-QRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPE-QRS-FTTIEKEKDGTPVVS 497 (795)
T ss_dssp -TTEEEEEETT---TCCEEEEC-TTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETT-TTE-EEECCBCTTCCBCCC
T ss_pred -cCceeEEeCC---CCcEEEee-cCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCC-CCe-EEEccccccccccCC
Confidence 5678888876 33322221 1 1345789999988887555446 568889987 343 332211000001123
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~ 347 (432)
..|.++..++++ ++.+. +. +.+..||..+++. .+........ .....|.++..+++|++.++..
T Consensus 498 ~~i~~i~~d~~g-~lWig-t~-~Gl~~~~~~~~~~------~~~~~~~~~~------l~~~~i~~i~~d~~g~lWigT~- 561 (795)
T 4a2l_A 498 KQITTLFRDSHK-RLWIG-GE-EGLSVFKQEGLDI------QKASILPVSN------VTKLFTNCIYEASNGIIWVGTR- 561 (795)
T ss_dssp CCEEEEEECTTC-CEEEE-ES-SCEEEEEEETTEE------EECCCSCSCG------GGGSCEEEEEECTTSCEEEEES-
T ss_pred ceEEEEEECCCC-CEEEE-eC-CceEEEeCCCCeE------EEecCCCCCC------CCCCeeEEEEECCCCCEEEEeC-
Confidence 578999999998 66554 44 4588899876542 1110000000 0135788999999998666544
Q ss_pred CeEEEEec
Q 014005 348 MNLKVFRY 355 (432)
Q Consensus 348 ~~i~iwd~ 355 (432)
+-+..||.
T Consensus 562 ~Gl~~~d~ 569 (795)
T 4a2l_A 562 EGFYCFNE 569 (795)
T ss_dssp SCEEEEET
T ss_pred CCceeECC
Confidence 35777776
No 266
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.94 E-value=0.012 Score=54.00 Aligned_cols=210 Identities=8% Similarity=-0.034 Sum_probs=119.2
Q ss_pred CCCcEEEEEEcCCCCEEEEe-cccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 31 DVDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
....+..++|++.+..|..+ ...+.|+.+++++.... ......+....
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~-----------------------~~~~~~~~~~~-------- 158 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----------------------SSYDTVISRDI-------- 158 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------------CCCEEEECSSC--------
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC-----------------------CcceEEEeCCC--------
Confidence 34567889999865555443 45677888887652200 00001111122
Q ss_pred hhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 110 LEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
.....+++ .+ .+.++++-...+.|.+.++.+.....+..... .....++.+|...+++..
T Consensus 159 ----~~p~glav--D~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~-------------~~P~~iavdp~~g~ly~t 219 (400)
T 3p5b_L 159 ----QAPDGLAV--DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG-------------SKPRAIVVDPVHGFMYWT 219 (400)
T ss_dssp ----SCEEEEEE--ETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSS-------------CCEEEEEEETTTTEEEEE
T ss_pred ----CCcccEEE--EecCCceEEEECCCCeEEEEeCCCCceEEEEeCCC-------------CCcceEEEecccCeEEEE
Confidence 45677888 65 44444555667889999988665444332211 235677787766655554
Q ss_pred eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
.....+.|...++.. .....+....-...+.|++++++..|..+ ..+.|..+|++ .......+. ....
T Consensus 220 d~~~~~~I~~~~~dG----~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~~~~-----~~~~ 289 (400)
T 3p5b_L 220 DWGTPAKIKKGGLNG----VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILE-----DEKR 289 (400)
T ss_dssp ECSSSCCEEEEETTS----CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCCCEEEEE-----CSST
T ss_pred eCCCCCEEEEEeCCC----CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC-CCccEEEEe-----CCCC
Confidence 432235666666652 22222213344678899999988777777 57889999988 332222220 0112
Q ss_pred CcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
-....++++.. + .++.+-...+.|..+|..+|+.
T Consensus 290 l~~P~gl~v~~-~-~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 290 LAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp TSSEEEEEEET-T-EEEEEESSSCSEEEEESSSCCC
T ss_pred CCCCEEEEEeC-C-EEEEecCCCCeEEEEEcCCCCc
Confidence 23455777743 3 5666666778898888777764
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.83 E-value=0.0099 Score=57.41 Aligned_cols=156 Identities=9% Similarity=-0.072 Sum_probs=85.9
Q ss_pred EEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC---CCcceecceee----ccceEEEEeec
Q 014005 130 FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP---SFAHGYHLEWT----ENMATKIANVG 202 (432)
Q Consensus 130 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~----~~~~v~i~d~~ 202 (432)
++.++.|+.|..+|..+++..-........ .-..+...| ++. ++.+... .++.|.-+|..
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~------------~~~~~~ssP~v~~g~-V~vg~~g~e~g~~g~v~A~D~~ 190 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIK------------VGSTLTIAPYVVKDK-VIIGSSGAELGVRGYLTAYDVK 190 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGG------------GTCBCCSCCEEETTE-EEECCBCGGGTCCCEEEEEETT
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCC------------ccceeecCCEEECCE-EEEEecccccCCCCeEEEEECC
Confidence 788888999999999998854332221100 000111111 222 2222210 15788888887
Q ss_pred ccccceeeEEeecCCCC------------------------------------Ce-eEEEeCCCCCEEEEE-cC------
Q 014005 203 NSVHARCQKVYPHAHDF------------------------------------NI-NSISNNSDCETFVSA-DD------ 238 (432)
Q Consensus 203 ~~~~~~~~~~~~~~~~~------------------------------------~i-~~~~~~~~~~~l~~~-~d------ 238 (432)
+++.+..+...... .+ ..+++.++...+..+ .+
T Consensus 191 ---TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 191 ---TGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp ---TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred ---CCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence 56665554211110 00 134556666677776 44
Q ss_pred ----------CeEEEEeCCCCCceeeEeecCCCCc---CCCCcceEEEEEc-CCCC--cEEEEEeCCCeEEEEEcccccc
Q 014005 239 ----------LRINLWNLEISDQCFNIVDMKPSNM---DDLTEVITSAEFH-PIYC--NLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 239 ----------~~i~lwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~-p~~~--~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
+.|..+|.+ +++....++..+... .....++. +... .+|. ..++.++.+|.+.++|.++|++
T Consensus 268 ~~r~gd~~y~~sv~Ald~~-TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDAD-TGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL 345 (599)
T ss_dssp GGSCSCCTTSSEEEEEETT-TCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred cccCCCccccceEEEEeCC-CCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCE
Confidence 378999999 677666654332211 11112222 2222 4552 3677788999999999999886
Q ss_pred c
Q 014005 303 C 303 (432)
Q Consensus 303 ~ 303 (432)
.
T Consensus 346 l 346 (599)
T 1w6s_A 346 V 346 (599)
T ss_dssp E
T ss_pred e
Confidence 3
No 268
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.83 E-value=0.014 Score=51.45 Aligned_cols=209 Identities=8% Similarity=-0.074 Sum_probs=119.3
Q ss_pred CCcEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 32 VDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
......++|++.++.| ++-...+.|..+++++.... ......+...-
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~-----------------------~~~~~~~~~~~--------- 76 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----------------------SSYDTVISRDI--------- 76 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------------CEEEECSSC---------
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC-----------------------cccEEEEeCCC---------
Confidence 4467899999876555 44455678988888762100 00001111111
Q ss_pred hhhcceeEEEEEEcCCCCEE-EEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 111 EIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
.....+++ .+.+..| ++-...+.|.+.++.......+..... .....++.+|.+..++...
T Consensus 77 ---~~p~glav--d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~-------------~~P~~iavdp~~g~ly~~d 138 (316)
T 1ijq_A 77 ---QAPDGLAV--DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG-------------SKPRAIVVDPVHGFMYWTD 138 (316)
T ss_dssp ---SCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT-------------CCEEEEEEETTTTEEEEEE
T ss_pred ---CCcCEEEE--eecCCeEEEEECCCCEEEEEeCCCCceEEEEECCC-------------CCcceEEeCCCCCEEEEEc
Confidence 34567888 6544444 454667899999987655443332111 2346777787666555443
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
....+.|...++.. ...+.+....-...+.+++++++..|..+ ..+.|..+|++ .. ..+.+- ......
T Consensus 139 ~~~~~~I~~~~~dG----~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d-g~-~~~~~~----~~~~~~ 208 (316)
T 1ijq_A 139 WGTPAKIKKGGLNG----VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GG-NRKTIL----EDEKRL 208 (316)
T ss_dssp CSSSCEEEEEETTS----CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SC-SCEEEE----ECTTTT
T ss_pred cCCCCeEEEEcCCC----CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC-CC-ceEEEe----ecCCcc
Confidence 31125666666642 22232213344578899999987777766 57799999998 32 222220 001122
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
.....+++.. + .++.+-...+.|..+|..+++.
T Consensus 209 ~~P~giav~~-~-~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 209 AHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp SSEEEEEEET-T-EEEEEETTTTEEEEEETTTCCC
T ss_pred CCcEEEEEEC-C-EEEEEECCCCeEEEEeCCCCcc
Confidence 3456777753 4 6666666778899999877664
No 269
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.82 E-value=0.0027 Score=62.52 Aligned_cols=206 Identities=8% Similarity=0.062 Sum_probs=104.4
Q ss_pred eeEEEEEEcCCCCEEEEEe-CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce-eec-
Q 014005 116 INRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE-WTE- 192 (432)
Q Consensus 116 v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~- 192 (432)
..++++ ..++++++.|+ .++.+.+||..+++...+..+.... .-..+...++++.++.|+ ...
T Consensus 245 ~~~~~~--~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R------------~~~s~~~~~dg~iyv~GG~~~~~ 310 (656)
T 1k3i_A 245 CPGISM--DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR------------GYQSSATMSDGRVFTIGGSWSGG 310 (656)
T ss_dssp SCEEEE--CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC------------SSCEEEECTTSCEEEECCCCCSS
T ss_pred cccccC--CCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccc------------cccceEEecCCeEEEEeCcccCC
Confidence 345666 67899999987 4568999999988776654332211 112233445677776666 311
Q ss_pred --cceEEEEeecccccceeeEEe----ecCCCCCeeEEEeCCCCCEEEEE-cC---------CeEEEEeCCCCCceeeEe
Q 014005 193 --NMATKIANVGNSVHARCQKVY----PHAHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIV 256 (432)
Q Consensus 193 --~~~v~i~d~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~-~d---------~~i~lwd~~~~~~~~~~~ 256 (432)
...+.+||.... +-...- ....... ....+..++..++.| .+ ..+..||.. .+......
T Consensus 311 ~~~~~~e~yd~~t~---~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~-~~~w~~~~ 385 (656)
T 1k3i_A 311 VFEKNGEVYSPSSK---TWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS-GSGDVKSA 385 (656)
T ss_dssp SCCCCEEEEETTTT---EEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS-TTCEEEEE
T ss_pred cccccceEeCCCCC---cceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecC-CcceeecC
Confidence 246888988732 211110 0000000 001122344444444 44 356778887 33322221
Q ss_pred ecCCCC--cCCCCcceEEEEEcC-CCCcEEEEEeCCC-----------eEEEEEccccccccccceeecccccccCCccc
Q 014005 257 DMKPSN--MDDLTEVITSAEFHP-IYCNLLAYSSSRG-----------FVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (432)
Q Consensus 257 ~~~~~~--~~~~~~~v~~~~~~p-~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~ 322 (432)
...+.. .......-.++.|.. ++ ++++.|+.++ .|.+||..+..- ..... ...+.
T Consensus 386 ~~~~~~~~~~~~~~~~~av~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W-----~~~~~-~~mp~---- 454 (656)
T 1k3i_A 386 GKRQSNRGVAPDAMCGNAVMYDAVKG-KILTFGGSPDYQDSDATTNAHIITLGEPGTSPN-----TVFAS-NGLYF---- 454 (656)
T ss_dssp EECEETTEECCCCBTCEEEEEETTTT-EEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE-----EEECT-TCCSS----
T ss_pred CccccccccCCCCCCCceEeccCCCC-eEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe-----eEEcc-CCCCC----
Confidence 100000 000011224455544 55 8888888543 677888776542 22210 00011
Q ss_pred eeeeecceeEEEEcCCCCEEEEee-C-----------CeEEEEec
Q 014005 323 FTEIIASISDIKFANDGQHLLSRD-Y-----------MNLKVFRY 355 (432)
Q Consensus 323 ~~~~~~~v~~~~~s~dg~~l~s~~-~-----------~~i~iwd~ 355 (432)
...-.++...|+|++++.|+ + ..+.+||.
T Consensus 455 ----~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp 495 (656)
T 1k3i_A 455 ----ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVP 495 (656)
T ss_dssp ----CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEG
T ss_pred ----CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcC
Confidence 11223456778999998863 1 46889988
No 270
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.82 E-value=0.015 Score=51.41 Aligned_cols=198 Identities=6% Similarity=-0.030 Sum_probs=109.3
Q ss_pred cceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccC----cceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 114 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRD----QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
.....++| ++.+..++.+ ...+.|..+++.+ .....+..... .....+++++.+..++..
T Consensus 30 ~~p~g~~~--d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~-------------~~p~glavd~~~~~ly~~ 94 (316)
T 1ijq_A 30 RNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-------------QAPDGLAVDWIHSNIYWT 94 (316)
T ss_dssp SSEEEEEE--ETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC-------------SCCCEEEEETTTTEEEEE
T ss_pred CceEEEEE--EeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC-------------CCcCEEEEeecCCeEEEE
Confidence 55778999 6665555544 5568999999876 22222211100 234556666544433332
Q ss_pred eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cC-CeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
.. ..+.|.+.++... ...... .........++++|.+..+..+ .. +.|...+++ +.....+ ...
T Consensus 95 d~-~~~~I~~~~~~g~---~~~~~~-~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--G~~~~~~------~~~ 161 (316)
T 1ijq_A 95 DS-VLGTVSVADTKGV---KRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSL------VTE 161 (316)
T ss_dssp ET-TTTEEEEEETTSS---SEEEEE-ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEE------ECS
T ss_pred EC-CCCEEEEEeCCCC---ceEEEE-ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--CCCeEEE------EEC
Confidence 11 1567888877632 222222 3344578899999966665554 33 788888887 3333322 022
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~ 345 (432)
.-...+.++++|++..+..+-+..+.|..+|+..... +.+..... ......++++.. +.+..+.
T Consensus 162 ~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-----~~~~~~~~----------~~~~P~giav~~-~~ly~~d 225 (316)
T 1ijq_A 162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-----KTILEDEK----------RLAHPFSLAVFE-DKVFWTD 225 (316)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEEECTT----------TTSSEEEEEEET-TEEEEEE
T ss_pred CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-----EEEeecCC----------ccCCcEEEEEEC-CEEEEEE
Confidence 2346789999998734444445667999999874322 33321000 012355777753 4444443
Q ss_pred -eCCeEEEEec
Q 014005 346 -DYMNLKVFRY 355 (432)
Q Consensus 346 -~~~~i~iwd~ 355 (432)
..+.|..+|.
T Consensus 226 ~~~~~V~~~~~ 236 (316)
T 1ijq_A 226 IINEAIFSANR 236 (316)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCeEEEEeC
Confidence 3388888886
No 271
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.81 E-value=0.016 Score=51.42 Aligned_cols=156 Identities=9% Similarity=0.010 Sum_probs=86.8
Q ss_pred cccccccCCCCCcceecceeeccceEEE-EeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCC
Q 014005 171 KNFMNEHNPPSFAHGYHLEWTENMATKI-ANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEIS 249 (432)
Q Consensus 171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i-~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~ 249 (432)
..+..+.+.+++.+++.+. .+.+.. .|-. ....+.+. ......+..+.+.++++.++.+.+|.++..+.+ .
T Consensus 163 ~~~~~~~~~~~~~~~~~g~---~G~~~~S~d~g-G~tW~~~~---~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D-~ 234 (327)
T 2xbg_A 163 GVMRNLNRSPSGEYVAVSS---RGSFYSTWEPG-QTAWEPHN---RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPD-N 234 (327)
T ss_dssp CCEEEEEECTTSCEEEEET---TSSEEEEECTT-CSSCEEEE---CCSSSCEEEEEECTTSCEEEEETTTEEEEEETT-E
T ss_pred cceEEEEEcCCCcEEEEEC---CCcEEEEeCCC-CCceeECC---CCCCCccceeEECCCCCEEEEeCCceEEEecCC-C
Confidence 3566777778777665543 233222 2210 11222221 344567889999999987777788888776433 2
Q ss_pred CceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecc
Q 014005 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (432)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~ 329 (432)
+.....+.. + . ......+..+.+.+++ .+++++ .+|.+ .+....|+. ...+... . . ....
T Consensus 235 G~tW~~~~~-~-~-~~~~~~~~~v~~~~~~-~~~~~g-~~g~i-~~S~DgG~t----W~~~~~~-~-~--------~~~~ 294 (327)
T 2xbg_A 235 SENWGELLS-P-L-RRNSVGFLDLAYRTPN-EVWLAG-GAGAL-LCSQDGGQT----WQQDVDV-K-K--------VPSN 294 (327)
T ss_dssp EEEECCCBC-T-T-SSCCSCEEEEEESSSS-CEEEEE-STTCE-EEESSTTSS----CEECGGG-T-T--------SSSC
T ss_pred CCeeEeccC-C-c-ccCCcceEEEEecCCC-EEEEEe-CCCeE-EEeCCCCcc----cEEcCcc-C-C--------CCCC
Confidence 333222100 0 0 0122358899999876 766655 46766 334343432 2222210 0 0 0245
Q ss_pred eeEEEEcCCCCEEEEeeCCeEEEEe
Q 014005 330 ISDIKFANDGQHLLSRDYMNLKVFR 354 (432)
Q Consensus 330 v~~~~~s~dg~~l~s~~~~~i~iwd 354 (432)
+.++.|.+++++++.|.+|.|.-++
T Consensus 295 ~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 295 FYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp CCEEEEEETTEEEEECSTTEEEEEC
T ss_pred eEEEEEECCCceEEEcCCceEEEEc
Confidence 7788888778888888888776654
No 272
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.79 E-value=0.0028 Score=62.36 Aligned_cols=243 Identities=9% Similarity=0.013 Sum_probs=123.4
Q ss_pred EEEEEEcCCCCEEEEecc-cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005 35 VSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (432)
Q Consensus 35 V~~~~fsp~g~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 113 (432)
..++++.++|++++.|+. +..+.+||..+.+- ..+..+...
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W-------------------------~~~~~~~~~------------- 286 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW-------------------------IPGPDMQVA------------- 286 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE-------------------------EECCCCSSC-------------
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCce-------------------------eECCCCCcc-------------
Confidence 345778899999999884 45799999877541 111111100
Q ss_pred cceeEEEEEEcCCCCEEEEEe-CC-----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 114 EKINRVRWCAAPNGSMFILST-ND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
..-.++.. .++++.++.|+ .+ ..+.+||..+++...+......+ ... ..- ...+..++...+.
T Consensus 287 R~~~s~~~--~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p-------~~~-~~~-~~~~~~~~~iyv~ 355 (656)
T 1k3i_A 287 RGYQSSAT--MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNP-------MLT-ADK-QGLYRSDNHAWLF 355 (656)
T ss_dssp CSSCEEEE--CTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGG-------GCC-CCT-TGGGTTTCSCCEE
T ss_pred ccccceEE--ecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccc-------ccc-ccc-cceeecCCceEEE
Confidence 11233445 46898999988 34 57999999988766542211000 000 000 1122233333333
Q ss_pred ceee-------ccceEEEEeecccccceeeEEeecC-----CCCCeeEEEeC-CCCCEEEEE-cCC-----------eEE
Q 014005 188 LEWT-------ENMATKIANVGNSVHARCQKVYPHA-----HDFNINSISNN-SDCETFVSA-DDL-----------RIN 242 (432)
Q Consensus 188 ~~~~-------~~~~v~i~d~~~~~~~~~~~~~~~~-----~~~~i~~~~~~-~~~~~l~~~-~d~-----------~i~ 242 (432)
+... ....+..||................ ....-.++.+. .++++++.| .++ .+.
T Consensus 356 Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~ 435 (656)
T 1k3i_A 356 GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIIT 435 (656)
T ss_dssp ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEE
T ss_pred ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEE
Confidence 3220 1346777887643211111111000 01122334443 367777777 532 577
Q ss_pred EEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC-----------CeEEEEEccccccccccceeec
Q 014005 243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----------GFVRLVDMRQSALCDHSARILR 311 (432)
Q Consensus 243 lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~ 311 (432)
+||.. ...-.... ...+. ....-.++...|++ ++++.|+.+ ..+.+||..+++- ..+.
T Consensus 436 ~yd~~-~~~W~~~~---~~~mp-~~R~~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W-----~~~~ 504 (656)
T 1k3i_A 436 LGEPG-TSPNTVFA---SNGLY-FARTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF-----YKQN 504 (656)
T ss_dssp CCSTT-SCCEEEEC---TTCCS-SCCBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE-----EECC
T ss_pred cCCCC-CCCeeEEc---cCCCC-CCcccCCeEECCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCCce-----eecC
Confidence 78877 33322211 00111 11112345667888 899998854 4689999887542 2221
Q ss_pred ccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005 312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (432)
Q Consensus 312 ~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~ 347 (432)
. .+.. ........+.|||+.++.|+.
T Consensus 505 ~---~~~~-------R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 505 P---NSIV-------RVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp C---CSSC-------CCTTEEEEECTTSCEEEEECC
T ss_pred C---CCCc-------cccccHhhcCCCcEEEecCCC
Confidence 1 0000 122234556799999998753
No 273
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.78 E-value=0.017 Score=50.99 Aligned_cols=203 Identities=10% Similarity=-0.031 Sum_probs=117.5
Q ss_pred CcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 33 DIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 33 ~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
....+++|++.+. ++.+-...+.|..++.++.... ...+...-
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~--------------------------~~~~~~~l---------- 78 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--------------------------QNVVVSGL---------- 78 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC--------------------------CEEEEECC----------
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce--------------------------EEEEcCCC----------
Confidence 3566888988544 4455455678888887664311 01111111
Q ss_pred hhcceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 112 IEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
.....+++ .+. +.++++-...+.|.++++.+.....+..... .....++++|.+..++....
T Consensus 79 --~~p~glav--d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~-------------~~P~giavdp~~g~ly~td~ 141 (318)
T 3sov_A 79 --LSPDGLAC--DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL-------------DQPRAIALDPSSGFMYWTDW 141 (318)
T ss_dssp --SCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-------------SSEEEEEEEGGGTEEEEEEC
T ss_pred --CCccEEEE--EcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCC-------------CCccEEEEeCCCCEEEEEec
Confidence 34567888 554 4444554567889999987654333321111 23456777776555554433
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
...+.|...+++. .....+....-...+.+++++++..|..+ ..+.|..+|++ ... .+.+ ..+...
T Consensus 142 ~~~~~I~r~~~dG----~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d-G~~-~~~~------~~~~~~ 209 (318)
T 3sov_A 142 GEVPKIERAGMDG----SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD-GTN-RQAV------VKGSLP 209 (318)
T ss_dssp SSSCEEEEEETTS----CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCS-CEEE------ECSCCS
T ss_pred CCCCEEEEEEcCC----CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC-CCc-eEEE------ecCCCC
Confidence 1235566666542 22222212334567899999977777766 67889999988 322 2222 022234
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
....+++..+ .++.+-...+.|..+|..+|+.
T Consensus 210 ~P~glav~~~--~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 210 HPFALTLFED--ILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp CEEEEEEETT--EEEEEETTTTEEEEEETTTCCS
T ss_pred CceEEEEeCC--EEEEEecCCCeEEEEECCCCCc
Confidence 4667777633 5666666778899999877764
No 274
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.76 E-value=0.0023 Score=63.03 Aligned_cols=59 Identities=7% Similarity=0.021 Sum_probs=38.4
Q ss_pred CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec---CcceeEeec
Q 014005 289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY---EPVMTLSFC 364 (432)
Q Consensus 289 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~ 364 (432)
+|.|..||+.+++.. -.... ........+...|.+++.++. +.++.||. +.+..++..
T Consensus 437 ~g~l~A~D~~tG~~~----W~~~~--------------~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 437 SGALLAWDPVKQKAA----WKVPY--------------PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp EEEEEEEETTTTEEE----EEEEE--------------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cceEEEEeCCCCcEE----EEccC--------------CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 478999999998863 23322 123333344555777777754 99999999 666666654
Q ss_pred c
Q 014005 365 G 365 (432)
Q Consensus 365 ~ 365 (432)
.
T Consensus 499 ~ 499 (668)
T 1kv9_A 499 S 499 (668)
T ss_dssp S
T ss_pred C
Confidence 3
No 275
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.73 E-value=0.011 Score=59.19 Aligned_cols=160 Identities=13% Similarity=0.113 Sum_probs=92.5
Q ss_pred ceeEEEEEEc-CCCCEEEEEeC-CC----eEEEEEccCc-ceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005 115 KINRVRWCAA-PNGSMFILSTN-DK----TIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (432)
Q Consensus 115 ~v~~l~~~~s-~~~~~l~s~~~-d~----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (432)
.+...+| | |||++++.+.. +| .|+++|+.++ +... ..+ ......+.|+|+++.++.
T Consensus 175 ~~~~~~~--S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~--------------~~~~~~~~WspDg~~l~y 237 (751)
T 2xe4_A 175 DVMEVKP--APPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKV--------------SGTNGEIVWGPDHTSLFY 237 (751)
T ss_dssp EEEEEEE--CTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCE--------------EEECSCCEECSSTTEEEE
T ss_pred EEeeeEe--cCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-ccc--------------cCceeeEEEecCCCEEEE
Confidence 5677888 9 99998886633 22 5999999988 5210 000 123457889999987776
Q ss_pred ceeecc---ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c---CCeEEEEeCCCCCcee--eEeec
Q 014005 188 LEWTEN---MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEISDQCF--NIVDM 258 (432)
Q Consensus 188 ~~~~~~---~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~---d~~i~lwd~~~~~~~~--~~~~~ 258 (432)
...... ..|..+++..... .....+..........+.|+|||++|+.. . ...|+++|+....... ..+
T Consensus 238 ~~~d~~~~~~~v~~~~lgt~~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l-- 314 (751)
T 2xe4_A 238 VTKDETLRENKVWRHVMGKLQS-EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV-- 314 (751)
T ss_dssp EEECTTCCEEEEEEEETTSCGG-GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES--
T ss_pred EEECCCCCCCEEEEEECCCCch-hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe--
Confidence 654221 3566677653211 12233312333456788999999998865 2 3467888887321122 222
Q ss_pred CCCCcCCCCcceEEEEEcCCCCcEEEEEeCC--C--eEEEEEccc
Q 014005 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--G--FVRLVDMRQ 299 (432)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--g--~i~iwd~~~ 299 (432)
.........++.|+..+ .+++....+ + .|..+|+.+
T Consensus 315 ----~~~~~~~~~s~~~~~g~-~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 315 ----RPREKGVRYDVQMHGTS-HLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp ----SCCCTTCCEEEEEETTT-EEEEEECTTTCTTCEEEEEETTS
T ss_pred ----ecCCCCceEEEeeeeCC-EEEEEeCCCCCCCcEEEEEcCCC
Confidence 12233445666665544 555555544 3 566666654
No 276
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.70 E-value=0.038 Score=53.19 Aligned_cols=159 Identities=8% Similarity=-0.034 Sum_probs=86.2
Q ss_pred CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC--CCcceecceee----ccceEEEEe
Q 014005 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP--SFAHGYHLEWT----ENMATKIAN 200 (432)
Q Consensus 127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~----~~~~v~i~d 200 (432)
+..++.++.|+.+..+|..+++..-......+. . -..+..+| .+..++.+... .++.+..+|
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~-----------~-~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D 182 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPK-----------V-GSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFD 182 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGG-----------G-TCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCC-----------c-cceeccCCEEECCEEEEEecCCccCCCCEEEEEE
Confidence 457888888999999999998754332222110 0 00111111 12223333221 157888888
Q ss_pred ecccccceeeEEeecCCCC-------------------------------------CeeEEEeCCCCCEEEEE-cC----
Q 014005 201 VGNSVHARCQKVYPHAHDF-------------------------------------NINSISNNSDCETFVSA-DD---- 238 (432)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~-------------------------------------~i~~~~~~~~~~~l~~~-~d---- 238 (432)
.. +++.+..+...... ....+++.++...+..+ .+
T Consensus 183 ~~---tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~ 259 (571)
T 2ad6_A 183 LK---TGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPW 259 (571)
T ss_dssp TT---TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCS
T ss_pred CC---CCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccc
Confidence 87 55555544211100 00134566665666655 32
Q ss_pred ------------CeEEEEeCCCCCceeeEeecCCCCc---CCCCcceEEEEEcCCCC--cEEEEEeCCCeEEEEEccccc
Q 014005 239 ------------LRINLWNLEISDQCFNIVDMKPSNM---DDLTEVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQSA 301 (432)
Q Consensus 239 ------------~~i~lwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~--~~l~~~~~dg~i~iwd~~~~~ 301 (432)
+.|..+|.+ +++....++..+... .....++. +...++|. ++++.++.+|.+.++|..+|+
T Consensus 260 ~~~~~~gd~~y~~~v~Ald~~-tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 337 (571)
T 2ad6_A 260 NETMRPGDNKWTMTIWGRDLD-TGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp CGGGSCSCCTTTTEEEEEETT-TCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred cCCccCCCceeEEEEEEEecC-CCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC
Confidence 358899998 666666553322111 11122222 23334662 257778899999999999988
Q ss_pred c
Q 014005 302 L 302 (432)
Q Consensus 302 ~ 302 (432)
+
T Consensus 338 ~ 338 (571)
T 2ad6_A 338 L 338 (571)
T ss_dssp E
T ss_pred E
Confidence 6
No 277
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.67 E-value=0.04 Score=53.18 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=38.1
Q ss_pred CeEEEEeCCCCCceeeEeecCCCCc---CCCCcceEEEEEc-CCCC--cEEEEEeCCCeEEEEEcccccc
Q 014005 239 LRINLWNLEISDQCFNIVDMKPSNM---DDLTEVITSAEFH-PIYC--NLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 239 ~~i~lwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~-p~~~--~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
+.|..+|.+ +++....++..+... .....++. +... .+|. ..++.++.+|.++++|.++|++
T Consensus 291 ~~v~AlD~~-TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 291 SGQVGVDPS-SGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL 358 (582)
T ss_dssp SEEEEECTT-TCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred ceEEEEeCC-CCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence 578999998 666666553322210 11112221 2222 4552 3788899999999999999886
No 278
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.66 E-value=0.018 Score=57.54 Aligned_cols=210 Identities=8% Similarity=-0.059 Sum_probs=118.9
Q ss_pred CCCcEEEEEEcCCCCE-EEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005 31 DVDIVSAIEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (432)
Q Consensus 31 h~~~V~~~~fsp~g~~-l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 109 (432)
....+..|+|++.+.. +++-...+.|+.++++..... ......+....
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-----------------------~~~~~vi~~~l-------- 470 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----------------------SSYDTVISRDI-------- 470 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------------CEEEECSSC--------
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC-----------------------cceeEEEecCC--------
Confidence 3456778899885444 445455677888887653210 00001122122
Q ss_pred hhhhcceeEEEEEEcCCCCEEEE-EeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 110 LEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 110 ~~~~~~v~~l~~~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
.....|++ .+.+..|+. -...+.|.+.++.+.....+..... .....++++|...+++..
T Consensus 471 ----~~P~GLAv--D~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l-------------~~P~gIaVDp~~g~LYwt 531 (791)
T 3m0c_C 471 ----QAPDGLAV--DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG-------------SKPRAIVVDPVHGFMYWT 531 (791)
T ss_dssp ----SCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT-------------CCEEEEEEETTTTEEEEE
T ss_pred ----CCcceeee--eecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCC-------------CCcceEEEecCCCCEEEe
Confidence 45667888 666655544 4567899999998665444432211 235678888876666554
Q ss_pred eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
.....+.|...++.. ...+.+........+.|++++.+..|..+ ..+.|...+++ ......++. ....
T Consensus 532 D~g~~~~I~~~~~dG----~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d-G~~~~~v~~-----~~~~ 601 (791)
T 3m0c_C 532 DWGTPAKIKKGGLNG----VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILE-----DEKR 601 (791)
T ss_dssp ECSSSCEEEEEETTS----CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEE-----CTTT
T ss_pred cCCCCCeEEEEecCC----CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC-CCceEEEec-----CCCc
Confidence 432235666666652 22233323444678899999877777766 57789999988 333222220 0111
Q ss_pred CcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
-....+|++..+ .++.+-...+.|...|..+|+.
T Consensus 602 l~~P~glav~~~--~lYwtD~~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 602 LAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSD 635 (791)
T ss_dssp TSSEEEEEEETT--EEEEEETTTTEEEEEETTTCCC
T ss_pred cCCCCEEEEeCC--EEEEEECCCCEEEEEeCCCCcc
Confidence 223456666432 5555555677888888777654
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.65 E-value=0.035 Score=50.81 Aligned_cols=197 Identities=7% Similarity=-0.000 Sum_probs=107.5
Q ss_pred cceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcc----eeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 114 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQK----VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..+..++| ++.+..|+.+ ...+.|..+++.+.. ...+..... .....+++++.+..++..
T Consensus 112 ~~~~~l~~--d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~-------------~~p~glavD~~~~~lY~~ 176 (400)
T 3p5b_L 112 RNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-------------QAPDGLAVDWIHSNIYWT 176 (400)
T ss_dssp SCEEEEEE--ETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC-------------SCEEEEEEETTTTEEEEE
T ss_pred CcceEEee--eeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC-------------CCcccEEEEecCCceEEE
Confidence 56789999 6655555555 456888888886522 222211110 234456666543333332
Q ss_pred eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--c-CCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~-d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
.. ..+.|.+.+++.. .....+ .........++++|.+..|..+ . .+.|...+++ .......+ ..
T Consensus 177 d~-~~~~I~~~~~~g~---~~~~l~-~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~~~~~~~-------~~ 243 (400)
T 3p5b_L 177 DS-VLGTVSVADTKGV---KRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV-------TE 243 (400)
T ss_dssp ET-TTTEEEEECTTTC---SEEEEE-ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT-SCSCEEEE-------CS
T ss_pred EC-CCCeEEEEeCCCC---ceEEEE-eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC-CCccEEEE-------EC
Confidence 21 1557777777532 222222 3344568899999976666655 2 4788888887 32222222 22
Q ss_pred CCcceEEEEEcCCCCcEEEEE-eCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 266 LTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
.-...+.++++|++ ..|..+ ...+.|..+|+..... +.+..... ......++++.. +.++.+
T Consensus 244 ~l~~P~glavd~~~-~~lY~aD~~~~~I~~~d~dG~~~-----~~~~~~~~----------~l~~P~gl~v~~-~~lywt 306 (400)
T 3p5b_L 244 NIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNR-----KTILEDEK----------RLAHPFSLAVFE-DKVFWT 306 (400)
T ss_dssp SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCCC-----EEEEECSS----------TTSSEEEEEEET-TEEEEE
T ss_pred CCCceEEEEEEeCC-CEEEEEECCCCEEEEEeCCCCcc-----EEEEeCCC----------CCCCCEEEEEeC-CEEEEe
Confidence 33568999999887 555555 4567899999874332 22221000 012344666643 333334
Q ss_pred eeC-CeEEEEec
Q 014005 345 RDY-MNLKVFRY 355 (432)
Q Consensus 345 ~~~-~~i~iwd~ 355 (432)
... +.|..+|.
T Consensus 307 d~~~~~V~~~~~ 318 (400)
T 3p5b_L 307 DIINEAIFSANR 318 (400)
T ss_dssp ESSSCSEEEEES
T ss_pred cCCCCeEEEEEc
Confidence 333 78888884
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.65 E-value=0.028 Score=49.62 Aligned_cols=195 Identities=9% Similarity=0.011 Sum_probs=109.8
Q ss_pred cceeEEEEEEcCCCCE-EEEEeCCCeEEEEEccCcce-eeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 114 EKINRVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
.....+.| .+.+.. +.+-...+.|..+++.++.. ..+..... .....+++.+.+..++....
T Consensus 35 ~~~~~ld~--d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l-------------~~p~glavd~~~g~ly~~d~- 98 (318)
T 3sov_A 35 EDAAAVDF--VFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL-------------LSPDGLACDWLGEKLYWTDS- 98 (318)
T ss_dssp EEEEEEEE--EGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC-------------SCCCEEEEETTTTEEEEEET-
T ss_pred CccEEEEE--EeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC-------------CCccEEEEEcCCCeEEEEEC-
Confidence 45668899 554444 44445678899999876532 11111110 23445666654443333221
Q ss_pred ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c--CCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
..+.|.+.+++.. ....+..........+++.|.+..+..+ . .+.|...+++ .......+ ...-.
T Consensus 99 ~~~~I~~~~~dG~----~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~-------~~~l~ 166 (318)
T 3sov_A 99 ETNRIEVSNLDGS----LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIII-------NSEIY 166 (318)
T ss_dssp TTTEEEEEETTSC----SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEE-------CSSCS
T ss_pred CCCEEEEEECCCC----cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEE-------ECCCC
Confidence 1567788877632 2222213445678899999876666655 2 5788888887 22222222 22234
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceee-cccccccCCccceeeeecceeEEEEcCCCCEEEEe-e
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D 346 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~ 346 (432)
..+.++++|++..+..+=+..+.|..+|+..... +.+ .+. .....++++..+ .++.+- .
T Consensus 167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-----~~~~~~~-------------~~~P~glav~~~-~lywtd~~ 227 (318)
T 3sov_A 167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-----QAVVKGS-------------LPHPFALTLFED-ILYWTDWS 227 (318)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEECSC-------------CSCEEEEEEETT-EEEEEETT
T ss_pred CccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-----EEEecCC-------------CCCceEEEEeCC-EEEEEecC
Confidence 5789999997734444445678899999874332 222 211 234566777544 333343 3
Q ss_pred CCeEEEEec
Q 014005 347 YMNLKVFRY 355 (432)
Q Consensus 347 ~~~i~iwd~ 355 (432)
.+.|..+|.
T Consensus 228 ~~~V~~~~~ 236 (318)
T 3sov_A 228 THSILACNK 236 (318)
T ss_dssp TTEEEEEET
T ss_pred CCeEEEEEC
Confidence 388888887
No 281
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.64 E-value=0.00088 Score=66.26 Aligned_cols=160 Identities=7% Similarity=-0.079 Sum_probs=90.5
Q ss_pred eeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc
Q 014005 116 INRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (432)
Q Consensus 116 v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 194 (432)
...|++ .+. +.++++-...+.|.+.++.+.....+..... .....++++|.+.+++.......+
T Consensus 455 P~glav--D~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~-------------~~P~giavDp~~g~ly~td~~~~~ 519 (699)
T 1n7d_A 455 PDGLAV--DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQG-------------SKPRAIVVDPVHGFMYWTDWGTPA 519 (699)
T ss_dssp CCCEEC--CCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSS-------------CCCCCEECCSSSSCCEECCCSSSC
T ss_pred cceEEE--EeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCC-------------CCcceEEEccCCCcEEEcccCCCC
Confidence 445666 543 4444444566789999987665444322111 234677888876655554432135
Q ss_pred eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (432)
Q Consensus 195 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (432)
.|...++... ..+.+........+.|+++|++..|..+ ..+.|..++++ ... .+.+- . ..........
T Consensus 520 ~I~~~~~dG~----~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d-G~~-~~~~~-~---~~~~~~~P~g 589 (699)
T 1n7d_A 520 KIKKGGLNGV----DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGN-RKTIL-E---DEKRLAHPFS 589 (699)
T ss_dssp CEEBCCSSSC----CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS-SSC-CEEEC-C---CSSSCSSCCC
T ss_pred eEEEEeCCCC----CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccC-CCc-eEEEE-e---cCCcCCCceE
Confidence 6666665421 1222212234467789999986666655 67889999987 322 22220 0 0111122345
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
+++..+ .++.+....+.|..+|..+++.
T Consensus 590 lavd~~--~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 590 LAVFED--KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp CEEETT--EEEEECSTTTCEEEEETTTEEE
T ss_pred eEEECC--EEEEEeCCCCeEEEEEccCCCc
Confidence 566543 5666666778999999877765
No 282
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.58 E-value=0.05 Score=54.67 Aligned_cols=264 Identities=8% Similarity=0.012 Sum_probs=140.5
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
...|.++...++|.+. .|+..+-|.+++..+....... . +....+... ... ..+.
T Consensus 257 ~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~--------~---------~~f~~~~~~-~~~------~~l~ 311 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLLPE--------Q---------IRFEFIREG-DNN------YSLS 311 (781)
T ss_dssp CCCEEEEEECTTSEEE-EEESSSCEEEEETTCC--------------------------CEEECBC-SST------TSBS
T ss_pred CceEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeeeee--------c---------cccccccCC-CCC------CCCC
Confidence 3569999988888754 4555456788887665421000 0 000000000 000 0000
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
...|.++.. ..+|. |-.|+.++-|..++...+............ .........|.++...+++. +..|+.
T Consensus 312 -~~~v~~i~~--D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~v~~i~~d~~g~-lWigt~- 381 (781)
T 3v9f_A 312 -NASARYIFQ--DSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQM----NESSLSNKVVSSVCDDGQGK-LWIGTD- 381 (781)
T ss_dssp -SSCEEEEEE--CSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CC----CSSCCSSSCEEEEEECTTSC-EEEEEB-
T ss_pred -CCeEEEEEE--eCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccc----ccCCCCCcceEEEEEcCCCC-EEEEeC-
Confidence 156888888 77775 555666666888888766544332110000 00011124566776666554 334443
Q ss_pred ccceEEEEeecccccceeeEEe--ecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 192 ENMATKIANVGNSVHARCQKVY--PHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
++.+..++.. ........ .......|.++...+++.+.+...++.+..+|.+ +++ +..+.. . ......
T Consensus 382 -~~Gl~~~~~~---~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~-~~~-~~~~~~--~--~~~~~~ 451 (781)
T 3v9f_A 382 -GGGINVFENG---KRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTR-LKK-FQIIEL--E--KNELLD 451 (781)
T ss_dssp -SSCEEEEETT---EEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSS-SCE-EEECCS--T--TTCCCC
T ss_pred -CCcEEEEECC---CCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCC-CCc-EEEecc--C--CCCCCe
Confidence 4567777765 22111100 0123457899998888876554466778888887 333 333210 0 123457
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCe
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN 349 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~ 349 (432)
|.++...+++ .+.+ |+. +.+..+|..+++. ..+..-..... ....|.++...++|++.+....+-
T Consensus 452 v~~i~~d~~g-~lwi-gt~-~Gl~~~~~~~~~~-----~~~~~~~~~~~-------~~~~i~~i~~d~~g~lWigt~~~G 516 (781)
T 3v9f_A 452 VRVFYEDKNK-KIWI-GTH-AGVFVIDLASKKV-----IHHYDTSNSQL-------LENFVRSIAQDSEGRFWIGTFGGG 516 (781)
T ss_dssp EEEEEECTTS-EEEE-EET-TEEEEEESSSSSC-----CEEECTTTSSC-------SCSCEEEEEECTTCCEEEEESSSC
T ss_pred EEEEEECCCC-CEEE-EEC-CceEEEeCCCCeE-----EecccCccccc-------ccceeEEEEEcCCCCEEEEEcCCC
Confidence 9999999887 6554 555 5688999876653 22221000000 035788999999998776654344
Q ss_pred EEEEec
Q 014005 350 LKVFRY 355 (432)
Q Consensus 350 i~iwd~ 355 (432)
+..||.
T Consensus 517 l~~~~~ 522 (781)
T 3v9f_A 517 VGIYTP 522 (781)
T ss_dssp EEEECT
T ss_pred EEEEeC
Confidence 666776
No 283
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.56 E-value=0.026 Score=54.37 Aligned_cols=59 Identities=10% Similarity=-0.001 Sum_probs=35.1
Q ss_pred CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec---CcceeEeec
Q 014005 289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY---EPVMTLSFC 364 (432)
Q Consensus 289 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~---~~~~~~~~~ 364 (432)
+|.|..||+.+++.. -.+.. ...+....+...+..++.+ .++.++.||. +.+.+++..
T Consensus 443 ~g~l~a~D~~tG~~~----W~~~~--------------~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAK----WTKWE--------------KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp CEEEEEECTTTCCEE----EEEEE--------------SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCeEEEEECCCCCEE----EEecC--------------CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 478999999988752 33322 1122222223334455555 4599999999 666666654
Q ss_pred c
Q 014005 365 G 365 (432)
Q Consensus 365 ~ 365 (432)
.
T Consensus 505 ~ 505 (571)
T 2ad6_A 505 S 505 (571)
T ss_dssp S
T ss_pred C
Confidence 4
No 284
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.46 E-value=0.053 Score=48.06 Aligned_cols=113 Identities=11% Similarity=0.076 Sum_probs=67.2
Q ss_pred cCCCCCeeEEEeCCCCCEEEEEcCCeE-EEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEE
Q 014005 215 HAHDFNINSISNNSDCETFVSADDLRI-NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (432)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~l~~~~d~~i-~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 293 (432)
......+..+.+.+++.+++.+.++.+ +-+|-. +.....+. ......+..+.+.+++ .+++ ++.+|.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g--G~tW~~~~------~~~~~~~~~~~~~~~g-~~~~-~~~~G~~~ 228 (327)
T 2xbg_A 159 QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG--QTAWEPHN------RTTSRRLHNMGFTPDG-RLWM-IVNGGKIA 228 (327)
T ss_dssp CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT--CSSCEEEE------CCSSSCEEEEEECTTS-CEEE-EETTTEEE
T ss_pred cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC--CCceeECC------CCCCCccceeEECCCC-CEEE-EeCCceEE
Confidence 345567889999999998888844444 334431 22222221 2334568899999987 6654 55678877
Q ss_pred EEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeE
Q 014005 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350 (432)
Q Consensus 294 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i 350 (432)
+.+...++. ...+.. +. .. ....+.++.+.+++..++.+.++.+
T Consensus 229 ~s~~D~G~t----W~~~~~-~~--~~------~~~~~~~v~~~~~~~~~~~g~~g~i 272 (327)
T 2xbg_A 229 FSDPDNSEN----WGELLS-PL--RR------NSVGFLDLAYRTPNEVWLAGGAGAL 272 (327)
T ss_dssp EEETTEEEE----ECCCBC-TT--SS------CCSCEEEEEESSSSCEEEEESTTCE
T ss_pred EecCCCCCe----eEeccC-Cc--cc------CCcceEEEEecCCCEEEEEeCCCeE
Confidence 764222332 111111 00 00 0235788999999998888877766
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.45 E-value=0.071 Score=53.26 Aligned_cols=159 Identities=8% Similarity=-0.014 Sum_probs=93.3
Q ss_pred cceeEEEEEEcCCCCEEE-EEeCCCeEEEEEccCcc----eeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 114 EKINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQK----VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..+..|+| .+....|+ +-...+.|+.+++.... ...+..... .....+++.+.+..|+..
T Consensus 424 ~~~~gl~~--d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l-------------~~P~GLAvD~~~~~LY~t 488 (791)
T 3m0c_C 424 RNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-------------QAPDGLAVDWIHSNIYWT 488 (791)
T ss_dssp SSEEEEEE--ETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC-------------SCCCEEEEETTTTEEEEE
T ss_pred CceEEEee--cccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC-------------CCcceeeeeecCCcEEEE
Confidence 56778999 66444444 44556788888887532 122211111 344567777666544443
Q ss_pred eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cC-CeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
.. ..+.|.+.++... ..+++..........|+++|.+..|..+ .+ +.|...+++ ......++ ..
T Consensus 489 D~-~~~~I~v~~ldG~----~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~lv-------~~ 555 (791)
T 3m0c_C 489 DS-VLGTVSVADTKGV----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV-------TE 555 (791)
T ss_dssp ET-TTTEEEEEETTSS----SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEE-------CS
T ss_pred ec-CCCeEEEEeCCCC----eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEEE-------eC
Confidence 32 1567888887632 2223213445568899999976666655 33 778888888 33322222 23
Q ss_pred CCcceEEEEEcCCCCcEEEEE-eCCCeEEEEEccccc
Q 014005 266 LTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSA 301 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~ 301 (432)
.-...+.|++++.+ ..|+.+ ...+.|...|+....
T Consensus 556 ~l~~P~GLavD~~~-~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 556 NIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS
T ss_pred CCCCceEEEEecCC-CeEEEEeCCCCcEEEEecCCCc
Confidence 33568999999877 455544 456789999987443
No 286
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.41 E-value=0.11 Score=50.55 Aligned_cols=201 Identities=12% Similarity=-0.022 Sum_probs=120.2
Q ss_pred CCcEEEEEEcCCCCEEE-EecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 32 VDIVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
-..+..|+|++.+..|. +-..++.|..++++..... ..+....
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~---------------------------~v~~~g~--------- 79 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE---------------------------HVVEFGL--------- 79 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------------------------EEECSSC---------
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE---------------------------EEEeCCC---------
Confidence 34678999999766554 4455678888887664311 1111111
Q ss_pred hhhcceeEEEEEEcCCCCEE-EEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 111 EIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
.....|++ .+.+..| .+-...+.|.+.++.+...+.+..... .....++++|....++...
T Consensus 80 ---~~P~GlAv--D~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l-------------~~P~~iavdp~~G~lY~tD 141 (628)
T 4a0p_A 80 ---DYPEGMAV--DWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL-------------DSPRALALDPAEGFMYWTE 141 (628)
T ss_dssp ---SCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSC-------------CCEEEEEEETTTTEEEEEE
T ss_pred ---CCcceEEE--EeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCC-------------CCcccEEEccCCCeEEEeC
Confidence 34567777 5554444 444556889999987655433322111 3356778887655555544
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
....+.|...++.. .....+ .......+.+++++++..|..+ ..+.|...|++. ... +++ ....
T Consensus 142 ~g~~~~I~r~~~dG----~~~~~l-~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG-~~~-~v~-------~~~l 207 (628)
T 4a0p_A 142 WGGKPKIDRAAMDG----SERTTL-VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG-LNR-EVI-------ADDL 207 (628)
T ss_dssp CSSSCEEEEEETTS----CSCEEE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSC-EEE-------EECC
T ss_pred CCCCCEEEEEeCCC----CceEEE-ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC-Cce-EEe-------eccC
Confidence 31134555555542 222232 2345578899999987777777 678899999983 222 333 2222
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
.....+++.. + .++.+-...+.|...|..+++.
T Consensus 208 ~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 208 PHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp SCEEEEEEET-T-EEEEEETTTTEEEEEETTTCCS
T ss_pred CCceEEEEEC-C-EEEEecCCCCEEEEEECCCCCc
Confidence 3456788765 3 5666666688999999777653
No 287
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.40 E-value=0.01 Score=51.98 Aligned_cols=76 Identities=12% Similarity=0.120 Sum_probs=53.0
Q ss_pred CeeEEEeCCCCCEEEEE-cC-CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005 220 NINSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (432)
Q Consensus 220 ~i~~~~~~~~~~~l~~~-~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~ 297 (432)
..+.+++.++|+..+++ .. +.|...+.+ ++....+...... .......+.|+++|++ +.|++...+|.+..+|+
T Consensus 138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pd--G~~~~~~~~~~~~-~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~ 213 (334)
T 2p9w_A 138 GVVQSAQDRDGNSYVAFALGMPAIARVSAD--GKTVSTFAWESGN-GGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDV 213 (334)
T ss_dssp EEEEEEECTTSCEEEEEEESSCEEEEECTT--SCCEEEEEECCCC-SSSCCSCSEEEEETTT-TEEEEESSSSSEEEEEC
T ss_pred CCceeEECCCCCEEEeCCCCCCeEEEEeCC--CCEEeeeeecCCC-cccccCcceEEEeCCC-CEEEEEcCCCeEEEEcC
Confidence 47789999999988887 66 777766666 3334433221111 1122346799999999 77777777999999998
Q ss_pred cc
Q 014005 298 RQ 299 (432)
Q Consensus 298 ~~ 299 (432)
++
T Consensus 214 ~~ 215 (334)
T 2p9w_A 214 SK 215 (334)
T ss_dssp SS
T ss_pred CC
Confidence 83
No 288
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.34 E-value=0.0083 Score=55.56 Aligned_cols=111 Identities=14% Similarity=0.054 Sum_probs=68.2
Q ss_pred CCCeeEEEeCCCCCEEEEE-c-CC----eEEEEeCCCCCcee--eEeecCCCCcCCCCcceEEEEEcC-CCCcEEEEEeC
Q 014005 218 DFNINSISNNSDCETFVSA-D-DL----RINLWNLEISDQCF--NIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSS 288 (432)
Q Consensus 218 ~~~i~~~~~~~~~~~l~~~-~-d~----~i~lwd~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~ 288 (432)
......++++++++.|.++ . ++ .+...+.+ +... ..+ . .......++++| ++ .++++-..
T Consensus 178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~--g~~~~~~~l-------~-~~~~p~giavdp~~g-~lyv~d~~ 246 (430)
T 3tc9_A 178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE--SGFKVITEL-------T-KGQNCNGAETHPING-ELYFNSWN 246 (430)
T ss_dssp CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG--GTSCSEEEE-------E-ECSSCCCEEECTTTC-CEEEEETT
T ss_pred CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC--Cceeeeeee-------c-cCCCceEEEEeCCCC-EEEEEECC
Confidence 3467889999999966655 3 22 23334433 2211 121 1 123356788999 55 77766667
Q ss_pred CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-C-CeEEEEec
Q 014005 289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKVFRY 355 (432)
Q Consensus 289 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~-~~i~iwd~ 355 (432)
++.|..+|...+.. ....... .......++|+|+|++|...+ . ++|..++.
T Consensus 247 ~~~V~~~~~~~~~~----~~~~~~~------------~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~ 299 (430)
T 3tc9_A 247 AGQVFRYDFTTQET----TPLFTIQ------------DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDY 299 (430)
T ss_dssp TTEEEEEETTTTEE----EEEEECS------------SSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEECCCCcE----EEEEEcC------------CCCcceeEEEcCCCCEEEEEECCCCEEEEEeC
Confidence 88999999876542 1111110 013567899999999665543 3 89999887
No 289
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.34 E-value=0.042 Score=49.70 Aligned_cols=124 Identities=14% Similarity=0.194 Sum_probs=79.7
Q ss_pred CeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCc-----------eeeEeecCCCCcCCCCcceEEEEEcCCCC--cEEEEE
Q 014005 220 NINSISNNSDCETFVSADDLRINLWNLEISDQ-----------CFNIVDMKPSNMDDLTEVITSAEFHPIYC--NLLAYS 286 (432)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~ 286 (432)
.|..+..+|+|++||...+..|.+-.+..... ..+.+.+.+.+ ......|..+.|||-+. ..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~-~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEE-VGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC---CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcc-cCCCCceeEEEeccccCCCCeEEEE
Confidence 57789999999999988888999988872211 12234333321 12357899999999763 488899
Q ss_pred eCCCeEEEEEccccccccccceeecccccccCCccce--eeeecceeEEEEcCCCCEEEE--eeC-CeEEEE
Q 014005 287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF--TEIIASISDIKFANDGQHLLS--RDY-MNLKVF 353 (432)
Q Consensus 287 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~--~~~~~~v~~~~~s~dg~~l~s--~~~-~~i~iw 353 (432)
..|+.|++||+...... +. .+.. .. ..| ......|.+++|.++|--|.. ... |.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~~--P~-~L~k-~~-----~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEK--PI-VLNK-PN-----NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSC--CE-EESC-CC-----SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCC--Cc-chhc-cc-----cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999999999863321 11 2322 10 001 111257889999998865544 334 666554
No 290
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.31 E-value=0.053 Score=50.14 Aligned_cols=211 Identities=9% Similarity=0.015 Sum_probs=113.1
Q ss_pred ceeEEEEEEcCC--CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 115 KINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 115 ~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
....++| +++ ...|..+...+.|+.+|..++....+... . .....+++++++...++.....
T Consensus 140 ~P~gvav--d~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~---~-----------~~P~giavd~dG~lyVad~~~~ 203 (433)
T 4hw6_A 140 NIWRMMF--DPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTN---I-----------GQCADVNFTLNGDMVVVDDQSS 203 (433)
T ss_dssp CCCEEEE--CTTTTTCEEEEECBTSCEEEEETTTTEEEEECCC---C-----------SCEEEEEECTTCCEEEEECCSC
T ss_pred CCceEEE--ccccCCCEEEEEeCCCCEEEEECCCCEEEEeecC---C-----------CCccEEEECCCCCEEEEcCCCC
Confidence 4568899 774 34555554448899999987776554331 1 3467888899888333322100
Q ss_pred --cceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCce-eeEeecCCCCcCCCC
Q 014005 193 --NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQC-FNIVDMKPSNMDDLT 267 (432)
Q Consensus 193 --~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~ 267 (432)
...+...+....... ...+ ........++++| ++.++++- .++.|+.+|.. .+.. ...+. .+..
T Consensus 204 ~~~~gv~~~~~~~~~~~--~~~~--~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~-~g~~~~~~~~------~~~~ 272 (433)
T 4hw6_A 204 DTNTGIYLFTRASGFTE--RLSL--CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA-TGTLTEEEVM------MDTK 272 (433)
T ss_dssp TTSEEEEEECGGGTTCC--EEEE--EECSSBCCCEECTTTCCEEECBTTCSEEEEECTT-TCCEEEEEEE------CSCC
T ss_pred cccceEEEEECCCCeec--cccc--cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC-CCeEEEEEec------cCCC
Confidence 111222222211110 1122 1234567789999 66655555 78889999987 3443 22221 1112
Q ss_pred cceEEEEEcCCCCc-EEEEEeCCCeEEEEEccc--cccccccceeecccccccCCc-c-ceeeeecceeEEEE-------
Q 014005 268 EVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSK-S-FFTEIIASISDIKF------- 335 (432)
Q Consensus 268 ~~v~~~~~~p~~~~-~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~h~~~~~~~-~-~~~~~~~~v~~~~~------- 335 (432)
..-..++|+|++ + +.++-...+.|+.++... +... ....+.+........ . ...........+++
T Consensus 273 ~~~~~ia~dpdG-~~LYvad~~~~~I~~~~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~ 349 (433)
T 4hw6_A 273 GSNFHIVWHPTG-DWAYIIYNGKHCIYRVDYNRETGKLA--VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYA 349 (433)
T ss_dssp SSCEEEEECTTS-SEEEEEETTTTEEEEEEBCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGT
T ss_pred CCcccEEEeCCC-CEEEEEeCCCCEEEEEeCCCCCcccC--cEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccc
Confidence 233579999999 7 445555678899988652 2210 012222210000000 0 00001234677999
Q ss_pred --cCCCCEEEEeeC-CeEEEEec
Q 014005 336 --ANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 336 --s~dg~~l~s~~~-~~i~iwd~ 355 (432)
.++|.+.++-.. ++|+.++.
T Consensus 350 ~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 350 GEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TSSCCEEEEEEETTTTEEEEECT
T ss_pred ccCCCCcEEEEECCCCEEEEECC
Confidence 677776666433 88999887
No 291
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.29 E-value=0.089 Score=47.12 Aligned_cols=61 Identities=8% Similarity=0.014 Sum_probs=37.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccc---cccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC---DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~ 345 (432)
....++| .++ .++++.-..+.|...++...... ......+.. ...+.++++.|||.+.++.
T Consensus 269 ap~G~~~-~~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~--------------~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 269 PPGNLAF-FRG-DLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG--------------FGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp CEEEEEE-ETT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES--------------SCCEEEEEECTTSCEEEEE
T ss_pred CCcceEE-ECC-EEEEEECCCCEEEEEEECCCCcceeecchheeccc--------------CCCeeEEEECCCCcEEEEE
Confidence 4567787 456 67666666778888877643310 000111111 3578899999999876663
No 292
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.27 E-value=0.088 Score=46.52 Aligned_cols=196 Identities=7% Similarity=0.074 Sum_probs=111.7
Q ss_pred CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC----Ccc--eecceeec--cceEE
Q 014005 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS----FAH--GYHLEWTE--NMATK 197 (432)
Q Consensus 126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~--~~~~~~~~--~~~v~ 197 (432)
...+++.....+-+.+||+....+..+.. +.+..+..-|. +.. ++..+.-. ++++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~----------------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~ 102 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT----------------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIE 102 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSCEEEEECC----------------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcCCCcEEEEccC----------------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEE
Confidence 34567777778899999995444433321 23333333332 111 22333323 46899
Q ss_pred EEeecccccceeeEEeec------CCCCCeeEEEe--CCC-CC-EEEEE-cCCeEEEEeCCC------CCceeeEeecCC
Q 014005 198 IANVGNSVHARCQKVYPH------AHDFNINSISN--NSD-CE-TFVSA-DDLRINLWNLEI------SDQCFNIVDMKP 260 (432)
Q Consensus 198 i~d~~~~~~~~~~~~~~~------~~~~~i~~~~~--~~~-~~-~l~~~-~d~~i~lwd~~~------~~~~~~~~~~~~ 260 (432)
++++... .. .+..+.. .....+..+++ +|. +. ++.+. .+|.+..|++.. ..+.++.+.
T Consensus 103 vf~iDp~-~~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--- 177 (355)
T 3amr_A 103 IYAIDGK-NG-TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--- 177 (355)
T ss_dssp EEEECTT-TC-CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE---
T ss_pred EEEECCC-CC-ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec---
Confidence 9977421 11 2333301 11156777887 774 44 45555 889999998842 123344441
Q ss_pred CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccc-----cccccccceeec-ccccccCCccceeeeecceeEEE
Q 014005 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-----SALCDHSARILR-DAAESHGSKSFFTEIIASISDIK 334 (432)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~~v~~~~ 334 (432)
..+.+-.+..++.. ..|+.+-++..|..+|.+- +++ +..+. +| ....+..|+
T Consensus 178 -----lgsq~EgcvvDd~~-g~Lyv~eEd~GIw~~da~p~~~~~~~~----v~~~~~g~------------l~aDvEGLa 235 (355)
T 3amr_A 178 -----MNSQTEGMAADDEY-GRLYIAEEDEAIWKFSAEPDGGSNGTV----IDRADGRH------------LTRDIEGLT 235 (355)
T ss_dssp -----CSSCEEEEEEETTT-TEEEEEETTTEEEEEECSTTSCSCCEE----EEEBSSSS------------BCSCEEEEE
T ss_pred -----CCCCcceEEEcCCC-CeEEEecccceEEEEeCCcCCCCCceE----EEEecCCc------------cccCcceEE
Confidence 12457888999887 7888899987777777541 222 22221 11 124678888
Q ss_pred E--cCCCC-EEEE-e-eCCeEEEEec----CcceeEeec
Q 014005 335 F--ANDGQ-HLLS-R-DYMNLKVFRY----EPVMTLSFC 364 (432)
Q Consensus 335 ~--s~dg~-~l~s-~-~~~~i~iwd~----~~~~~~~~~ 364 (432)
+ .++|+ ||++ + .+++..+||. +.+..|.+-
T Consensus 236 i~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~Ig 274 (355)
T 3amr_A 236 IYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRIT 274 (355)
T ss_dssp EEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEEC
T ss_pred EEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEec
Confidence 7 56666 5554 4 3489999999 345555543
No 293
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.24 E-value=0.1 Score=46.76 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=39.5
Q ss_pred cceEEEEEc-------CCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC
Q 014005 268 EVITSAEFH-------PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (432)
Q Consensus 268 ~~v~~~~~~-------p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~ 340 (432)
.....++|. .++ .++++.-..+.|...++............+.+ ....+.++++.|||.
T Consensus 259 ~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~-------------~~~rp~~v~~~pDG~ 324 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVRKISTFFKN-------------VFGRLRDVVIDDDGG 324 (354)
T ss_dssp CCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEEEEEEECTT-------------TSCCEEEEEECTTSC
T ss_pred cCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCcccceeeeccC-------------CCCCeeEEEECCCCc
Confidence 357888884 456 77776667778888887743211000111211 025688999999998
Q ss_pred EEEEe
Q 014005 341 HLLSR 345 (432)
Q Consensus 341 ~l~s~ 345 (432)
+.++.
T Consensus 325 lyv~~ 329 (354)
T 3a9g_A 325 ILIST 329 (354)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76664
No 294
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.22 E-value=0.037 Score=53.34 Aligned_cols=79 Identities=14% Similarity=0.087 Sum_probs=46.2
Q ss_pred CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccccc
Q 014005 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH 317 (432)
Q Consensus 238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~ 317 (432)
+|.|..||+. +++......... ...... ....+ .+++.++.||.++.||.++|++ +-.++.
T Consensus 465 ~G~l~A~D~~-tG~~~W~~~~~~---~~~~g~-----~~tag-glvf~g~~dg~l~A~D~~tG~~----lW~~~~----- 525 (582)
T 1flg_A 465 VGSLRAMDPV-SGKVVWEHKEHL---PLWAGV-----LATAG-NLVFTGTGDGYFKAFDAKSGKE----LWKFQT----- 525 (582)
T ss_dssp SEEEEEECTT-TCCEEEEEEESS---CCCSCC-----EEETT-TEEEEECTTSEEEEEETTTCCE----EEEEEC-----
T ss_pred cceEEEEECC-CCCEEEEecCCC---CCcccc-----eEeCC-CEEEEECCCCcEEEEECCCCCE----EEEecC-----
Confidence 4678888888 555444331110 111111 11124 5777799999999999999987 444544
Q ss_pred CCccceeeeecce--eEEEEcCCCC-EEEE
Q 014005 318 GSKSFFTEIIASI--SDIKFANDGQ-HLLS 344 (432)
Q Consensus 318 ~~~~~~~~~~~~v--~~~~~s~dg~-~l~s 344 (432)
...+ .-+.+..+|+ |+++
T Consensus 526 ---------~~g~~a~P~~y~~~G~qYv~~ 546 (582)
T 1flg_A 526 ---------GSGIVSPPITWEQDGEQYLGV 546 (582)
T ss_dssp ---------SSCCCSCCEEEEETTEEEEEE
T ss_pred ---------CCCcccCceEEEECCEEEEEE
Confidence 1222 2366777886 5554
No 295
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.21 E-value=0.072 Score=51.43 Aligned_cols=60 Identities=5% Similarity=-0.049 Sum_probs=35.1
Q ss_pred ceEEEEeecccccceeeEEeecCCCC--------CeeEEEeC-CCC---CEEEEE-cCCeEEEEeCCCCCceeeEee
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDF--------NINSISNN-SDC---ETFVSA-DDLRINLWNLEISDQCFNIVD 257 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~--------~i~~~~~~-~~~---~~l~~~-~d~~i~lwd~~~~~~~~~~~~ 257 (432)
+.+..+|.+ +++.+..+...+.. ...-+... .+| ..++.+ .+|.++++|.+ +++.+....
T Consensus 278 ~sv~Ald~~---TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~-tG~~lw~~~ 350 (599)
T 1w6s_A 278 MTIFGRDAD---TGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRT-DGALVSANK 350 (599)
T ss_dssp SEEEEEETT---TCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETT-TCCEEEEEE
T ss_pred ceEEEEeCC---CCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECC-CCCEeeccc
Confidence 367777777 66666665332221 11112222 466 456667 89999999998 566655443
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.18 E-value=0.15 Score=47.57 Aligned_cols=174 Identities=8% Similarity=-0.030 Sum_probs=92.8
Q ss_pred cccccCCCCCcceecceeeccceEEEEeec-------ccccc-----e----eeEEeecCCCCCeeEEEeCCCCCEEEEE
Q 014005 173 FMNEHNPPSFAHGYHLEWTENMATKIANVG-------NSVHA-----R----CQKVYPHAHDFNINSISNNSDCETFVSA 236 (432)
Q Consensus 173 i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~-------~~~~~-----~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 236 (432)
...++.+|+...++.... ..+.|..+|+. ..... . ....+..........++|+|+++.|..+
T Consensus 249 p~giavdp~~g~LYvtd~-~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYva 327 (496)
T 3kya_A 249 CNGATIHPINGELYFNSY-EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFG 327 (496)
T ss_dssp CCCEEECTTTCCEEEEET-TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred ceEEEEcCCCCeEEEEEC-CCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEE
Confidence 456677886655554433 16678888886 22110 0 0111223334567899999999976665
Q ss_pred --cCCeEEEEeCCCCCcee---eEeecCCCCcCC---------CCcceE-EEEEc-------CCCCcEEEEEeCCCeEEE
Q 014005 237 --DDLRINLWNLEISDQCF---NIVDMKPSNMDD---------LTEVIT-SAEFH-------PIYCNLLAYSSSRGFVRL 294 (432)
Q Consensus 237 --~d~~i~lwd~~~~~~~~---~~~~~~~~~~~~---------~~~~v~-~~~~~-------p~~~~~l~~~~~dg~i~i 294 (432)
....|+.++.+.....+ .++--... ..+ .-.... .++.. +++ .++++=....+|+.
T Consensus 328 D~~~h~I~kid~dg~~~~~~~~~~~aG~~g-~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~ 405 (496)
T 3kya_A 328 VINNHYFMRSDYDEIKKEFITPYNFVGGYK-QSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRK 405 (496)
T ss_dssp ETTTTEEEEEEEETTTTEECCCEEEEEBTT-BCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEE
T ss_pred eCCCCEEEEEecCCCcceecccEEecCCCC-CCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEE
Confidence 67888887765212111 11100000 011 112344 45554 455 66666667789999
Q ss_pred EEccccccccccceeecccccc-------c-CC-cc--ceeeeecceeEEEEcCC-CCEEEEeeC-CeEEEEec
Q 014005 295 VDMRQSALCDHSARILRDAAES-------H-GS-KS--FFTEIIASISDIKFAND-GQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 295 wd~~~~~~~~~~~~~~~~h~~~-------~-~~-~~--~~~~~~~~v~~~~~s~d-g~~l~s~~~-~~i~iwd~ 355 (432)
++ .+|. +.++.+.... + .. .. ...........++++++ |.+.++-.. ++|+.+++
T Consensus 406 i~-~~G~-----v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~ 473 (496)
T 3kya_A 406 VT-PEGI-----VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISM 473 (496)
T ss_dssp EC-TTCB-----EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred Ee-CCCC-----EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEEC
Confidence 98 4454 3555441100 0 00 00 00011245678999997 665555433 88998888
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.17 E-value=0.0039 Score=61.65 Aligned_cols=198 Identities=7% Similarity=-0.040 Sum_probs=106.6
Q ss_pred cceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccC----cceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005 114 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRD----QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 188 (432)
..+..++| ++.+..|+.+ ...+.|..+++.+ .....+.... -.....+++.+.+..++..
T Consensus 406 ~~p~gla~--d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~-------------~~~P~glavD~~~g~LY~t 470 (699)
T 1n7d_A 406 RNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-------------IQAPDGLAVDWIHSNIYWT 470 (699)
T ss_dssp TTCCCCEE--ETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC-------------C--CCCEECCCSSSBCEEC
T ss_pred cceEEEcc--ccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC-------------CCCcceEEEEeeCCcEEEE
Confidence 45667888 6666666655 4567888888875 1111111000 0234556776544444332
Q ss_pred eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cC-CeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDD 265 (432)
Q Consensus 189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~ 265 (432)
.. ..+.|.+.++.. . ....+..........++++|.+..|..+ .. +.|..++++ +....++ ...
T Consensus 471 D~-~~~~I~v~d~dg---~-~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d--G~~~~~l------~~~ 537 (699)
T 1n7d_A 471 DS-VLGTVSVADTKG---V-KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSL------VTE 537 (699)
T ss_dssp CT-TTSCEEEEBSSS---C-CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS--SCCCCEE------SCS
T ss_pred ec-cCCeEEEEecCC---C-ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC--CCCeeEE------EeC
Confidence 21 156788888752 2 2222213334567889999976655554 33 678877776 2222222 012
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~ 345 (432)
.-...+.|+|+|++..++++-+..+.|..+|+..... +.+..... ......+|++..+ .++++.
T Consensus 538 ~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-----~~~~~~~~----------~~~~P~glavd~~-~lywtd 601 (699)
T 1n7d_A 538 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-----KTILEDEK----------RLAHPFSLAVFED-KVFWTD 601 (699)
T ss_dssp SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-----EEECCCSS----------SCSSCCCCEEETT-EEEEEC
T ss_pred CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-----EEEEecCC----------cCCCceEeEEECC-EEEEEe
Confidence 2245678999998735555556778999999874332 22221000 0123345666554 233333
Q ss_pred -eCCeEEEEec
Q 014005 346 -DYMNLKVFRY 355 (432)
Q Consensus 346 -~~~~i~iwd~ 355 (432)
..+.|..+|.
T Consensus 602 ~~~~~V~~~d~ 612 (699)
T 1n7d_A 602 IINEAIFSANR 612 (699)
T ss_dssp STTTCEEEEET
T ss_pred CCCCeEEEEEc
Confidence 3388888886
No 298
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.14 E-value=0.16 Score=49.29 Aligned_cols=204 Identities=11% Similarity=-0.005 Sum_probs=114.1
Q ss_pred CCcEEEEEEcCCCCEEEEec-ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005 32 VDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 110 (432)
......++|++.+..|..+. ..+.|..+++++.... ...+....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~--------------------------~~v~~~~~--------- 83 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--------------------------QNVVVSGL--------- 83 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C--------------------------EEEECSSC---------
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce--------------------------EEEEeCCC---------
Confidence 44578899998666655444 4567888887654210 01122211
Q ss_pred hhhcceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 111 EIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 111 ~~~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
.....|++ .+.+..|+.+ ...+.|.+.++.+...+.+..... .....++++|....++...
T Consensus 84 ---~~P~GlAv--D~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l-------------~~P~~Iavdp~~g~ly~tD 145 (619)
T 3s94_A 84 ---LSPDGLAC--DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL-------------DQPRAIALDPSSGFMYWTD 145 (619)
T ss_dssp ---SCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-------------SCCCCEEEETTTTEEEEEE
T ss_pred ---CCcCeEEE--EecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCC-------------CCCceEEEecCCCeEEEec
Confidence 45678888 6655555444 567899999998765444332111 3456788877755555444
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
....+.|...++.. .....+........+.+++++++..|..+ ..+.|...|++ ........ .+..
T Consensus 146 ~g~~~~I~r~~~dG----~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d-G~~~~~~~-------~~~~ 213 (619)
T 3s94_A 146 WGEVPKIERAGMDG----SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD-GTNRQAVV-------KGSL 213 (619)
T ss_dssp CSSSCEEEEEETTS----CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS-CCEEC--------------
T ss_pred cCCCCEEEEEECCC----CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC-CCccEEEE-------eCCC
Confidence 31123444444432 22222213345578899999987777766 57788888887 32222211 1112
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
.....+++..+ .++.+-...+.|...|..+++.
T Consensus 214 ~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 214 PHPFALTLFED--ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp --CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred CCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence 22346677644 4555555677899999877754
No 299
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.12 E-value=0.13 Score=45.49 Aligned_cols=147 Identities=11% Similarity=0.094 Sum_probs=84.4
Q ss_pred CCeEEEEEc--cCcceeeeeecCCCCccccccccccccccccccC--CCCCc--ceecceeeccceEEEEeeccc----c
Q 014005 136 DKTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN--PPSFA--HGYHLEWTENMATKIANVGNS----V 205 (432)
Q Consensus 136 d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~--~~~~~~~~~~~~v~i~d~~~~----~ 205 (432)
+++|.+|++ .++.+..+....... ...-..+..+++ ++... +++.... ++.+..|++... .
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv-------~t~~~~pyGlcly~~~~~g~~yafV~~k--~G~~~q~~l~~~~~g~~ 168 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPI-------ATAINEVYGFTLYHSQKTGKYYAMVTGK--EGEFEQYELKADKNGYI 168 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCE-------ECCCSSCCCEEEEECTTTCCEEEEEECS--SSEEEEEEEEECTTSCE
T ss_pred CCeEEEEEECCCCCceeeccccccCc-------CCCCCCeeEEEEEecCCCCcEEEEEECC--CCeEEEEEEEeCCCCcc
Confidence 589999977 344443332210000 000034555665 55433 4444444 688888888532 3
Q ss_pred cceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCC----CceeeEeecCCCCcCCCCcceEEEEE--cCC
Q 014005 206 HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS----DQCFNIVDMKPSNMDDLTEVITSAEF--HPI 278 (432)
Q Consensus 206 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~ 278 (432)
..+.++.+. ..+.+..+...+....|..+ .+..|..++.+-. ...+..+ ........+..+++ .++
T Consensus 169 ~~~lVR~f~--lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~-----~~g~l~aDvEGLai~~~~~ 241 (355)
T 3amr_A 169 SGKKVRAFK--MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA-----DGRHLTRDIEGLTIYYAAD 241 (355)
T ss_dssp EEEEEEEEE--CSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEB-----SSSSBCSCEEEEEEEECGG
T ss_pred cceEEEEec--CCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEe-----cCCccccCcceEEEEecCC
Confidence 556677773 34678899999988889988 7766666664411 1222221 11222346788888 455
Q ss_pred CC-cEEEEEeCCCeEEEEEcc
Q 014005 279 YC-NLLAYSSSRGFVRLVDMR 298 (432)
Q Consensus 279 ~~-~~l~~~~~dg~i~iwd~~ 298 (432)
+. .+|+++-.++++.+||.+
T Consensus 242 g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 242 GKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp GCEEEEEEEGGGTEEEEEESS
T ss_pred CCEEEEEEcCCCCEEEEEECC
Confidence 52 344444477899999986
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.03 E-value=0.047 Score=51.02 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=68.0
Q ss_pred CeeEEEe-------CCCCCEEEEE-cCC-------eEEEEeCCCCCcee-----eEeecCCCCcCCCCcceEEEEEcCCC
Q 014005 220 NINSISN-------NSDCETFVSA-DDL-------RINLWNLEISDQCF-----NIVDMKPSNMDDLTEVITSAEFHPIY 279 (432)
Q Consensus 220 ~i~~~~~-------~~~~~~l~~~-~d~-------~i~lwd~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~p~~ 279 (432)
....++| +++++.|.++ ..+ .+.+++....+... ..+ .. -.....++++|++
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v-------~~-~~~p~giavdp~~ 258 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLI-------AA-YKQCNGATIHPIN 258 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEE-------EE-ESCCCCEEECTTT
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceee-------cc-CCCceEEEEcCCC
Confidence 5778999 9999866666 332 26666544212211 122 11 1234578899965
Q ss_pred CcEEEEEeCCCeEEEEEcc-------ccccc-----cc--cc-eeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 280 CNLLAYSSSRGFVRLVDMR-------QSALC-----DH--SA-RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 280 ~~~l~~~~~dg~i~iwd~~-------~~~~~-----~~--~~-~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
..++++-..++.|..+|+. ++... .. .. ..+.. + ...+...++|+|+|++|..
T Consensus 259 g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~-----------~~~~p~~ia~~p~G~~lYv 326 (496)
T 3kya_A 259 GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-A-----------DPSWEFQIFIHPTGKYAYF 326 (496)
T ss_dssp CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-S-----------SSSCCEEEEECTTSSEEEE
T ss_pred CeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec-C-----------CCCCceEEEEcCCCCEEEE
Confidence 3666667788899999997 44420 00 00 11111 0 0245678999999996555
Q ss_pred eeC--CeEEEEec
Q 014005 345 RDY--MNLKVFRY 355 (432)
Q Consensus 345 ~~~--~~i~iwd~ 355 (432)
++. ++|+.++.
T Consensus 327 aD~~~h~I~kid~ 339 (496)
T 3kya_A 327 GVINNHYFMRSDY 339 (496)
T ss_dssp EETTTTEEEEEEE
T ss_pred EeCCCCEEEEEec
Confidence 432 88888776
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.81 E-value=0.14 Score=44.80 Aligned_cols=119 Identities=12% Similarity=0.053 Sum_probs=73.1
Q ss_pred eeEEEe---CCCCCEEEEEc--------------CCeEEEEeCC---CCCceeeEeecCCCCcCC-------CCcceEEE
Q 014005 221 INSISN---NSDCETFVSAD--------------DLRINLWNLE---ISDQCFNIVDMKPSNMDD-------LTEVITSA 273 (432)
Q Consensus 221 i~~~~~---~~~~~~l~~~~--------------d~~i~lwd~~---~~~~~~~~~~~~~~~~~~-------~~~~v~~~ 273 (432)
+..+.+ .|+++++++.+ +..+..+|+. + ++.+...++.... .+ -......+
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~t-g~~~~~~dL~~~~-~~~~~~~g~~~~~~nDv 142 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSEN-SKPVWSVNFEKVQ-DEFEKKAGKRPFGVVQS 142 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTT-CCCSEEEESHHHH-HHHHHHHSSCCEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCC-CCEEEEecCcccc-ccccccccccccCCcee
Confidence 356777 57766666542 5678888877 3 2333333221100 00 12358899
Q ss_pred EEcCCCCcEEEEEeCC-CeEEEEEccccccccccceeeccc-ccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeE
Q 014005 274 EFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDA-AESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 350 (432)
Q Consensus 274 ~~~p~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~h-~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i 350 (432)
+..++| +..++++.. +.|...+.. |+. ...+... ++.. .....+.++++|||+.|+... .+.+
T Consensus 143 avD~~G-naYVt~s~~~~~I~rV~pd-G~~----~~~~~~~~~~~~--------~~~G~nGIv~~pdg~~Liv~~~~g~L 208 (334)
T 2p9w_A 143 AQDRDG-NSYVAFALGMPAIARVSAD-GKT----VSTFAWESGNGG--------QRPGYSGITFDPHSNKLIAFGGPRAL 208 (334)
T ss_dssp EECTTS-CEEEEEEESSCEEEEECTT-SCC----EEEEEECCCCSS--------SCCSCSEEEEETTTTEEEEESSSSSE
T ss_pred EECCCC-CEEEeCCCCCCeEEEEeCC-CCE----EeeeeecCCCcc--------cccCcceEEEeCCCCEEEEEcCCCeE
Confidence 999999 888888888 888777765 332 2222210 0000 023477999999999888763 5999
Q ss_pred EEEec
Q 014005 351 KVFRY 355 (432)
Q Consensus 351 ~iwd~ 355 (432)
.-+|+
T Consensus 209 ~~fD~ 213 (334)
T 2p9w_A 209 TAFDV 213 (334)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 99998
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.79 E-value=0.26 Score=43.88 Aligned_cols=111 Identities=11% Similarity=0.100 Sum_probs=63.8
Q ss_pred CCeeEEEeCCCCCEEEEEc----C------------CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcE
Q 014005 219 FNINSISNNSDCETFVSAD----D------------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 282 (432)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~~----d------------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 282 (432)
...+.+++.++|.+.++.. | ..-.+|.++ .++ .+.+ ...-...+.++|+||+ +.
T Consensus 165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d-~~~-~~~~-------~~~l~~pNGia~spDg-~~ 234 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS-PND-VRVV-------AEGFDFANGINISPDG-KY 234 (355)
T ss_dssp SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC-TTC-CEEE-------EEEESSEEEEEECTTS-SE
T ss_pred CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE-CCe-EEEe-------ecCCcccCcceECCCC-CE
Confidence 4577888888887666542 1 112333333 122 1111 1222346899999999 66
Q ss_pred EEEE-eCCCeEEEEEccc-cccccccceeecccccccCCccceeeeecceeEEEEcC-CCCEEEEee-C-CeEEEEec
Q 014005 283 LAYS-SSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-Y-MNLKVFRY 355 (432)
Q Consensus 283 l~~~-~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~s~~-~-~~i~iwd~ 355 (432)
|..+ +..+.|..|++.. ++... .+.+.. ....-.+++.+ +|.+.+++. + +.|..|+.
T Consensus 235 lYvadt~~~~I~~~~~~~~g~l~~--~~~~~~--------------~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 235 VYIAELLAHKIHVYEKHANWTLTP--LRVLSF--------------DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEE--EEEEEC--------------SSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred EEEEeCCCCeEEEEEECCCCcEec--CEEEeC--------------CCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 5555 4678999999863 32211 123321 34567899999 598877653 3 45444454
No 303
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.78 E-value=0.68 Score=48.44 Aligned_cols=34 Identities=9% Similarity=0.027 Sum_probs=27.8
Q ss_pred CCcEEEEEEcCC------CCEEEEecc-cceEEEEEecCCc
Q 014005 32 VDIVSAIEFDKT------GDYLAVGDR-GGRVILFETVGGK 65 (432)
Q Consensus 32 ~~~V~~~~fsp~------g~~l~t~~~-dg~i~iw~~~~~~ 65 (432)
.+.|.|+++.|. ++++|.|.. |++++|+++.+.+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~ 593 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE 593 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence 568999999864 368999986 9999999997643
No 304
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.70 E-value=0.31 Score=43.47 Aligned_cols=93 Identities=9% Similarity=0.171 Sum_probs=56.5
Q ss_pred CCeEEEEeCCCCCceeeEeecCCCCcC-CCCcceEEEEEcCCCCcEEEEEeC-----------------CCeEEEEEccc
Q 014005 238 DLRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSS-----------------RGFVRLVDMRQ 299 (432)
Q Consensus 238 d~~i~lwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~-----------------dg~i~iwd~~~ 299 (432)
+.++.+|+++..+.....+. +.. ..-...+.+.+.++| .+.++... .|.|.-+|.
T Consensus 138 ~s~ielf~~d~~~~~~~~~~----~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-- 210 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLK----TIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-- 210 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEE----EECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--
T ss_pred CCeEEEEEEECCCCEEEEEe----ccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEEC--
Confidence 67888888874333332220 111 123457899999998 77766541 234444443
Q ss_pred cccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-C-CeEEEEec
Q 014005 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKVFRY 355 (432)
Q Consensus 300 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~-~~i~iwd~ 355 (432)
++. .....+ -...+.++|||||+.|..++ . ++|..|++
T Consensus 211 ~~~----~~~~~~--------------l~~pNGia~spDg~~lYvadt~~~~I~~~~~ 250 (355)
T 3sre_A 211 NDV----RVVAEG--------------FDFANGINISPDGKYVYIAELLAHKIHVYEK 250 (355)
T ss_dssp TCC----EEEEEE--------------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred CeE----EEeecC--------------CcccCcceECCCCCEEEEEeCCCCeEEEEEE
Confidence 221 122222 45678999999999887764 3 89999998
No 305
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.44 E-value=0.74 Score=44.71 Aligned_cols=194 Identities=5% Similarity=-0.054 Sum_probs=112.5
Q ss_pred cceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 114 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
.....|+| ++.+..++.+ ..++.|..+++.+...+.+..... .....+++++.+..++.... .
T Consensus 37 ~~~~~l~~--d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~-------------~~P~GlAvD~~~~~LY~tD~-~ 100 (628)
T 4a0p_A 37 KEASALDF--DVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGL-------------DYPEGMAVDWLGKNLYWADT-G 100 (628)
T ss_dssp SCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-------------SCCCEEEEETTTTEEEEEET-T
T ss_pred CceEEEEE--ECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCC-------------CCcceEEEEeCCCEEEEEEC-C
Confidence 45778999 6655555544 567889999987655443332211 23455666655444443321 1
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--c-CCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~-d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
.+.|.+.++... ..+.+..........+++.|....|..+ . .+.|...+++ +.....+ ...-..
T Consensus 101 ~~~I~v~~~dG~----~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d--G~~~~~l-------~~~~~~ 167 (628)
T 4a0p_A 101 TNRIEVSKLDGQ----HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD--GSERTTL-------VPNVGR 167 (628)
T ss_dssp TTEEEEEETTST----TCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEE-------ECSCSS
T ss_pred CCEEEEEecCCC----cEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC--CCceEEE-------ECCCCC
Confidence 567777777632 1222213445568899999865566555 2 5678888887 3323322 123356
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCC
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYM 348 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~ 348 (432)
.+.+++++++.++..+=...+.|..+|+..... +.+... .....++++.. +....+- ..+
T Consensus 168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-----~v~~~~-------------l~~P~glav~~-~~ly~tD~~~~ 228 (628)
T 4a0p_A 168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-----EVIADD-------------LPHPFGLTQYQ-DYIYWTDWSRR 228 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEEEC-------------CSCEEEEEEET-TEEEEEETTTT
T ss_pred cceEEEccccCEEEEEECCCCEEEEEcCCCCce-----EEeecc-------------CCCceEEEEEC-CEEEEecCCCC
Confidence 789999998724444445667899999875432 233221 23345677765 3333343 237
Q ss_pred eEEEEec
Q 014005 349 NLKVFRY 355 (432)
Q Consensus 349 ~i~iwd~ 355 (432)
.|...|.
T Consensus 229 ~I~~~dk 235 (628)
T 4a0p_A 229 SIERANK 235 (628)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 8888875
No 306
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.24 E-value=0.95 Score=43.88 Aligned_cols=157 Identities=13% Similarity=0.066 Sum_probs=89.6
Q ss_pred CcEEEEEEcCCCCEEE-EecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 33 DIVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
..+.+++|++.+..|. +-...+.|+.+++++.... ..+...-
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~---------------------------~v~~~~~---------- 391 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQ---------------------------FVVTAQI---------- 391 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------------------------EEECSSC----------
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccE---------------------------EEEECCC----------
Confidence 4567888888555444 4344667877777653211 1111111
Q ss_pred hhcceeEEEEEEcCCCC-EEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005 112 IEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (432)
.....+++ ...+. ++.+-+..+.|.+.++.+.....+..... .....+++.|....++....
T Consensus 392 --~~p~GlAv--D~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l-------------~~P~~iavdp~~G~ly~tD~ 454 (619)
T 3s94_A 392 --AHPDGIAV--DWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDL-------------EEPRAIVLDPMVGYMYWTDW 454 (619)
T ss_dssp --SCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTC-------------CSEEEEEEETTTTEEEEEEC
T ss_pred --CCcCceEE--ecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCC-------------CCeeeEEEEcCCCcEEEecC
Confidence 45667888 55444 44454567889999987654333322111 34567777776444444332
Q ss_pred eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCC
Q 014005 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLE 247 (432)
Q Consensus 191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~ 247 (432)
.....|...+++. .....+....-...+.+++++++..|..+ ..+.|...+++
T Consensus 455 g~~~~I~r~~~dG----~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~d 509 (619)
T 3s94_A 455 GEIPKIERAALDG----SDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTD 509 (619)
T ss_dssp SSSCEEEEEETTS----CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESS
T ss_pred CCCCEEEEEccCC----CccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecC
Confidence 1123444444432 22222213445678899999877777776 56788888887
No 307
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.23 E-value=0.54 Score=40.96 Aligned_cols=203 Identities=12% Similarity=0.193 Sum_probs=121.0
Q ss_pred EEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeE
Q 014005 39 EFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR 118 (432)
Q Consensus 39 ~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 118 (432)
-.+|..+.||.-. ..++.|+|++++. .++.|.. ...|.-
T Consensus 73 IMnP~~~ViALra-g~~LQiFnletK~------------------------------klks~~~----------~e~Vvf 111 (365)
T 2xzh_A 73 IMNPASKVIALKA-GKTLQIFNIEMKS------------------------------KMKAHTM----------TDDVTF 111 (365)
T ss_dssp EECSSSSEEEEEE-TTEEEEEETTTTE------------------------------EEEEEEC----------SSCEEE
T ss_pred eeCCCccEEEEec-CCeEEEechHHhh------------------------------hhcceec----------CCccEE
Confidence 3577777777654 5688899988864 3444431 166777
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEccCc-ceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec-----
Q 014005 119 VRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE----- 192 (432)
Q Consensus 119 l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----- 192 (432)
-.|. +.+.|+..+ +..|.-|++.+. ...++ +..+. ...+..|..-..+++.++++..+...
T Consensus 112 WkWi---s~~~L~lVT-~taVyHWs~~~~s~P~kv--FdR~~-------~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v 178 (365)
T 2xzh_A 112 WKWI---SLNTVALVT-DNAVYHWSMEGESQPVKM--FDRHS-------SLAGCQIINYRTDAKQKWLLLTGISAQQNRV 178 (365)
T ss_dssp EEEC---SSSEEEEEE-SSEEEEEESSTTCCCEEE--EECCG-------GGTTCEEEEEEECTTSCEEEEEEEEEETTEE
T ss_pred EEec---CCCeEEEEc-CCcEEEEcccCCCCCcee--eecch-------hcccceEEEEEECCCCCEEEEEeEeccCCcc
Confidence 7882 344555554 467999999753 22222 22222 12246677777788888887766532
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC---CCEEEEE-c---CCeEEEEeCCCC--Cc-e--eeEeecCC
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-D---DLRINLWNLEIS--DQ-C--FNIVDMKP 260 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~-~---d~~i~lwd~~~~--~~-~--~~~~~~~~ 260 (432)
.|.+.+|..+. +..+.+ .+|-.....+.+..+ ...++.+ . .+++++-++... +. . .+..++--
T Consensus 179 ~G~mQLYS~er----~~sQ~i-eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~f 253 (365)
T 2xzh_A 179 VGAMQLYSVDR----KVSQPI-EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFF 253 (365)
T ss_dssp EEEEEEEETTT----TEEEEE-CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECC
T ss_pred ceeEEEEeecc----ccccee-eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeC
Confidence 56888888862 233344 566554433333211 1234444 2 368899988633 11 1 11111100
Q ss_pred CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
. -+...+-.-++..++.. .++..-+.-|.+.+||+.++..
T Consensus 254 p-pea~~DFPVamqvs~ky-gviyviTK~G~ihlyDleTgt~ 293 (365)
T 2xzh_A 254 P-PEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTC 293 (365)
T ss_dssp C-TTCTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCE
T ss_pred C-ccccCCceEEEEecccC-CEEEEEeCCcEEEEEEcccCcE
Confidence 0 02234455688888887 7888899999999999999874
No 308
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.19 E-value=0.64 Score=41.48 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=43.2
Q ss_pred cceEEEEEcC-------CCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC
Q 014005 268 EVITSAEFHP-------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (432)
Q Consensus 268 ~~v~~~~~~p-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~ 340 (432)
..+..+.|.. ++ .++++.-..+.|...++..++.... ...+.. ....+.++++.|||.
T Consensus 271 ~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~~~~~~~-~~~~~~-------------~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNGDKVTED-GRILTD-------------RGQRIRDVRTGPDGY 335 (353)
T ss_dssp CCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEEE-EEESGG-------------GCCCEEEEEECTTSC
T ss_pred cCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCCCeEeee-EEcccC-------------CCCceeEEEECCCCc
Confidence 3577788864 45 6777666778888888775432100 111111 134788999999998
Q ss_pred EEEEeeCCeEEEEec
Q 014005 341 HLLSRDYMNLKVFRY 355 (432)
Q Consensus 341 ~l~s~~~~~i~iwd~ 355 (432)
+.++.+...=+||.+
T Consensus 336 lyv~td~~~g~I~ri 350 (353)
T 2g8s_A 336 LYVLTDESSGELLKV 350 (353)
T ss_dssp EEEEECSTTEEEEEE
T ss_pred EEEEEeCCCCEEEEE
Confidence 766543222244443
No 309
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.03 E-value=0.84 Score=41.39 Aligned_cols=156 Identities=13% Similarity=0.086 Sum_probs=93.2
Q ss_pred CCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeeccc
Q 014005 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (432)
Q Consensus 125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~ 204 (432)
.+|..++.+- ++.||.-++..+...+......+- .-..+..+..+|+|.+++..+ +..|.|-.+...
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i---------~f~~i~qlvlSpsG~lLAl~g---~~~V~Vv~LP~~ 96 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHL---------VLDDTFHVISSTSGDLLCLFN---DNEIFVMEVPWG 96 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTC---------CCCTTCEEEECTTSSEEEEEC---SSEEEEEECCTT
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCccc---------ccCceeEEEECCCCCEEEEec---CCeEEEEEecCc
Confidence 4666666664 478888887743322222222100 013577789999999998876 456777766521
Q ss_pred c---c--c----eeeEEeecC-----CCCCeeEEEeCCC---CCEEEEE-cCCeEEEEeCCCCC-ceeeEeecCCC--Cc
Q 014005 205 V---H--A----RCQKVYPHA-----HDFNINSISNNSD---CETFVSA-DDLRINLWNLEISD-QCFNIVDMKPS--NM 263 (432)
Q Consensus 205 ~---~--~----~~~~~~~~~-----~~~~i~~~~~~~~---~~~l~~~-~d~~i~lwd~~~~~-~~~~~~~~~~~--~~ 263 (432)
. . . -..+.+.-+ ....|..+.|+|- +..|++- .|+.|++||+.... .+. .++.+.. ..
T Consensus 97 ~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~ 175 (452)
T 3pbp_A 97 YSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGL 175 (452)
T ss_dssp CSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEES
T ss_pred cccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCC
Confidence 1 0 0 112333222 3567999999995 4567777 99999999998422 222 3321111 11
Q ss_pred CCCCcceEEEEEcCCCCcEEEEEe--CCCeEEEE
Q 014005 264 DDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLV 295 (432)
Q Consensus 264 ~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~iw 295 (432)
......|.+++|.+++ -.|...+ ..|.|+-.
T Consensus 176 d~~~~ev~S~~Fg~~~-lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 176 DARVNDITDLEFSKDG-LTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CSSCCCEEEEEECTTS-SCEEEEECTTSCEEEEE
T ss_pred CcccceEEEEEEcCCC-cEEEEEecCCCCCEEEE
Confidence 2333678999999977 6666655 77877544
No 310
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.44 E-value=0.86 Score=37.24 Aligned_cols=69 Identities=6% Similarity=-0.117 Sum_probs=37.4
Q ss_pred CCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeE
Q 014005 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 292 (432)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 292 (432)
..+..+.+.|+|.+.++. |+.++-.... .+....-+.....--...-...+.+.|.|++ .+.++. +|.+
T Consensus 135 ~~~~~lff~p~G~Lyav~-dg~lyr~~~P-~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G-~l~~v~--~g~~ 203 (236)
T 1tl2_A 135 SGFKFLFFHPNGYLYAVH-GQQFYKALPP-VSNQDNWLARATKIGQGGWDTFKFLFFSSVG-TLFGVQ--GGKF 203 (236)
T ss_dssp GGEEEEEECTTSCEEEEE-TTEEEEECCC-SSTTCCHHHHCEEEESSSGGGEEEEEECTTS-CEEEEE--TTEE
T ss_pred CceEEEEECCCceEEEEe-CCcEEecCCC-CCCCcccccccceeccCCcceEEEEEECCCC-cEEEEe--CCeE
Confidence 467899999999888888 8875433222 1110000000000001233345667799998 766655 6643
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.42 E-value=1.5 Score=39.89 Aligned_cols=204 Identities=12% Similarity=0.198 Sum_probs=121.5
Q ss_pred EEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeE
Q 014005 39 EFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR 118 (432)
Q Consensus 39 ~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 118 (432)
-.+|..+.||.=. ..++.|+|++++. .++.|.. ...|.-
T Consensus 72 IMnP~~~iiALra-g~~lQiFnle~K~------------------------------klks~~~----------~e~Vvf 110 (494)
T 1bpo_A 72 IMNPASKVIALKA-GKTLQIFNIEMKS------------------------------KMKAHTM----------TDDVTF 110 (494)
T ss_dssp EECSSSSCEEEEE-TTEEEEEETTTTE------------------------------EEEEEEC----------SSCCCE
T ss_pred eeCCCCcEEEEec-CCeEEEEchHHhh------------------------------hhcceec----------CCCceE
Confidence 3566677666644 5678888887764 3344431 156777
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec-----c
Q 014005 119 VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE-----N 193 (432)
Q Consensus 119 l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~ 193 (432)
-.|. + .+.|+..+ +..|+-|++.+.. ....-+..+. ...+..|..-..+++.++++..+... .
T Consensus 111 WkWi-s--~~~l~lVT-~taVyHWsi~~~s-~P~kvFdR~~-------~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~ 178 (494)
T 1bpo_A 111 WKWI-S--LNTVALVT-DNAVYHWSMEGES-QPVKMFDRHS-------SLAGCQIINYRTDAKQKWLLLTGISAQQNRVV 178 (494)
T ss_dssp EEEE-E--TTEEEEEC-SSEEEEEESSSSC-CCEEEEECCG-------GGTTCEEEEEEECTTSSEEEEEEEEEETTEEE
T ss_pred EEec-C--CCeEEEEc-CCeeEEecccCCC-Cchhheecch-------hcccceEEEEEECCCCCeEEEEeecccCCccc
Confidence 7884 2 34555554 4679999997532 1222222222 12246677777789999887666532 5
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC---CCEEEEE-c---CCeEEEEeCCCC--C-ce--eeEeecCCC
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-D---DLRINLWNLEIS--D-QC--FNIVDMKPS 261 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~-~---d~~i~lwd~~~~--~-~~--~~~~~~~~~ 261 (432)
|.+.+|..+. +..+.+ .+|-.....+.+..+ ...++.+ . .+.+++-++... + .. .+..++.-.
T Consensus 179 G~mQLYS~er----~~sQ~i-eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fp 253 (494)
T 1bpo_A 179 GAMQLYSVDR----KVSQPI-EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP 253 (494)
T ss_dssp EEEEEEESTT----CCEEEE-CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCC
T ss_pred ceEEEeeccc----cccchh-eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCC
Confidence 6888888862 233444 677655544444322 1234444 3 378999988632 1 11 111111110
Q ss_pred CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
-+...+-.-++..++.. .++..-+.-|.|.+||+.++..
T Consensus 254 -pe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 254 -PEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp -TTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCE
T ss_pred -cccccCceeEEEecccC-CEEEEEecCceEEEEeccccee
Confidence 02233456688889887 7888899999999999999874
No 312
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.20 E-value=1.4 Score=39.23 Aligned_cols=30 Identities=7% Similarity=0.353 Sum_probs=22.1
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR 145 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~ 145 (432)
.....|+| .|+|+.++++...|.|++++..
T Consensus 18 ~~P~~i~~--~pdG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 18 DHPWALAF--LPDNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp SSEEEEEE--CSTTCCEEEEETTTEEEEEETT
T ss_pred CCcEEEEE--cCCCCEEEEEeCCceEEEEeCC
Confidence 45678999 8899834555667899888753
No 313
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.85 E-value=1.7 Score=37.42 Aligned_cols=150 Identities=8% Similarity=-0.009 Sum_probs=74.1
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec---cceEE
Q 014005 126 NGSMFILSTND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE---NMATK 197 (432)
Q Consensus 126 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~v~ 197 (432)
++..++.|+.+ ..+.+||+.+.+...+....... ..-..+ ..++...+.|+... ...+.
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----------~~~~~~--~~~~~iyv~GG~~~~~~~~~~~ 178 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAR-----------EGAGLV--VASGVIYCLGGYDGLNILNSVE 178 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC-----------BSCEEE--EETTEEEEECCBCSSCBCCCEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCc-----------ccceEE--EECCEEEEECCCCCCcccceEE
Confidence 56677777643 46889999888876665433211 111111 12344444444321 24677
Q ss_pred EEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC-----CeEEEEeCCCCCceeeEeecCCCCcCCCCcceE
Q 014005 198 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (432)
Q Consensus 198 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (432)
.||+... ....+..+ ........++.+ ++.+++.| .+ ..+.+||++ +.. ...+... ........
T Consensus 179 ~~d~~~~-~W~~~~~~-p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~-~~~-W~~~~~~----p~~r~~~~ 248 (301)
T 2vpj_A 179 KYDPHTG-HWTNVTPM-ATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIR-TDS-WTTVTSM----TTPRCYVG 248 (301)
T ss_dssp EEETTTT-EEEEECCC-SSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT-TTE-EEEECCC----SSCCBSCE
T ss_pred EEeCCCC-cEEeCCCC-CcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCC-CCc-EEECCCC----CCccccee
Confidence 8887643 22222222 111111122222 56666666 43 468899998 333 2222111 11111112
Q ss_pred EEEEcCCCCcEEEEEeCC-----CeEEEEEccccc
Q 014005 272 SAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSA 301 (432)
Q Consensus 272 ~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~ 301 (432)
.+.+ ++ ++++.|+.+ ..+.+||+.+.+
T Consensus 249 ~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 249 ATVL--RG-RLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEE--TT-EEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEE--CC-EEEEEcCcCCCcccccEEEEcCCCCe
Confidence 2222 55 778888765 357888887644
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.64 E-value=1.9 Score=37.06 Aligned_cols=150 Identities=5% Similarity=-0.032 Sum_probs=74.9
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCcc---eeeeeecCCCCccccccccccccccccccCCCCCcceecceeec---cc
Q 014005 126 NGSMFILSTND-----KTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE---NM 194 (432)
Q Consensus 126 ~~~~l~s~~~d-----~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~ 194 (432)
++..++.|+.+ ..+.+||+.+.+ ...+..+.... .....+. .++...+.|+... ..
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r-----------~~~~~~~--~~~~lyv~GG~~~~~~~~ 128 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRR-----------GLAGATT--LGDMIYVSGGFDGSRRHT 128 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCC-----------BSCEEEE--ETTEEEEECCBCSSCBCC
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCc-----------cceeEEE--ECCEEEEEcccCCCcccc
Confidence 56677777654 468899998877 66654332211 1111111 1344444444322 23
Q ss_pred eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC-----CeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (432)
Q Consensus 195 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (432)
.+.+||+... +...+..+ ......-.++.+ +++.++.| .+ ..+..||+. +.. ...+...+. ...
T Consensus 129 ~~~~~d~~~~-~W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~-~~~-W~~~~~~p~----~r~ 198 (301)
T 2vpj_A 129 SMERYDPNID-QWSMLGDM-QTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPH-TGH-WTNVTPMAT----KRS 198 (301)
T ss_dssp EEEEEETTTT-EEEEEEEC-SSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETT-TTE-EEEECCCSS----CCB
T ss_pred eEEEEcCCCC-eEEECCCC-CCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCC-CCc-EEeCCCCCc----ccc
Confidence 6778887643 22333333 111111122222 56666666 43 458888987 333 222211111 111
Q ss_pred ceEEEEEcCCCCcEEEEEeCC-----CeEEEEEccccc
Q 014005 269 VITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSA 301 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~ 301 (432)
....+.+ ++ ++++.|+.+ ..+.+||+.+.+
T Consensus 199 ~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 199 GAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp SCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred cceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCCCc
Confidence 1122222 45 778888764 468999998754
No 315
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.55 E-value=2.1 Score=37.00 Aligned_cols=150 Identities=7% Similarity=-0.009 Sum_probs=74.3
Q ss_pred CCCEEEEEeCC------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec-------
Q 014005 126 NGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE------- 192 (432)
Q Consensus 126 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------- 192 (432)
++..++.|+.+ ..+.+||..+.+...+..+.... ..-. +. ..++...+.|+...
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----------~~~~-~~-~~~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR-----------CSHG-MV-EANGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC-----------BSCE-EE-EETTEEEEECCEESCTTTCEE
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc-----------ceeE-EE-EECCEEEEECCCCCCCCcccc
Confidence 56677777655 46889999988776654432211 0111 11 12344444444322
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC-----CeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDL 266 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 266 (432)
...+.+||+... ....+..+ ......- +++.. ++++++.| .+ ..+.+||+. ++. ...+. + +...
T Consensus 168 ~~~~~~yd~~~~-~W~~~~~~-p~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~-~~~-W~~~~--~--~p~~ 237 (306)
T 3ii7_A 168 LNSCEVYDPATE-TWTELCPM-IEARKNH-GLVFV-KDKIFAVGGQNGLGGLDNVEYYDIK-LNE-WKMVS--P--MPWK 237 (306)
T ss_dssp CCCEEEEETTTT-EEEEECCC-SSCCBSC-EEEEE-TTEEEEECCEETTEEBCCEEEEETT-TTE-EEECC--C--CSCC
T ss_pred cceEEEeCCCCC-eEEECCCc-cchhhcc-eEEEE-CCEEEEEeCCCCCCCCceEEEeeCC-CCc-EEECC--C--CCCC
Confidence 235777887643 22222222 1111111 22222 56666666 32 467889988 332 22221 1 1111
Q ss_pred CcceEEEEEcCCCCcEEEEEeCC-----CeEEEEEccccc
Q 014005 267 TEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSA 301 (432)
Q Consensus 267 ~~~v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~ 301 (432)
......+.+ ++ ++++.|+.+ ..+.+||+.+.+
T Consensus 238 r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 238 GVTVKCAAV--GS-IVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp BSCCEEEEE--TT-EEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred ccceeEEEE--CC-EEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 112223333 45 788888854 468888887654
No 316
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.45 E-value=2.5 Score=37.60 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=59.0
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC---Ccceeccee
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS---FAHGYHLEW 190 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~ 190 (432)
.....|+| .|+|+ |+++..+|.|.+++. .++ ..+...... .........++++|+ ...++....
T Consensus 29 ~~P~~ia~--~pdG~-l~V~e~~g~I~~~d~-~G~-~~~~~~~v~--------~~g~~g~~gia~~pdf~~~g~lyv~~~ 95 (354)
T 3a9g_A 29 EVPWSIAP--LGGGR-YLVTERPGRLVLISP-SGK-KLVASFDVA--------NVGEAGLLGLALHPEFPKKSWVYLYAS 95 (354)
T ss_dssp SCEEEEEE--EETTE-EEEEETTTEEEEECS-SCE-EEEEECCCC--------CSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCCeEEEE--cCCCe-EEEEeCCCEEEEEeC-CCc-eEeecccee--------ecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence 45678999 67886 555566799999873 444 333322100 001245678889887 444444433
Q ss_pred e--cc----ceEEEEeecccc--c--cee-eEEeecCCCCCeeEEEeCCCCCEEEEE
Q 014005 191 T--EN----MATKIANVGNSV--H--ARC-QKVYPHAHDFNINSISNNSDCETFVSA 236 (432)
Q Consensus 191 ~--~~----~~v~i~d~~~~~--~--~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~ 236 (432)
. .+ ..|..++..... . .+. +..+..........++|.|+|.++++.
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 96 YFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT 152 (354)
T ss_dssp EECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred ccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence 1 12 456666654320 0 111 111211222235679999999866653
No 317
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.42 E-value=1.7 Score=38.50 Aligned_cols=118 Identities=12% Similarity=0.067 Sum_probs=65.1
Q ss_pred CCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCC---CCcEEEEEe--CC
Q 014005 216 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSS--SR 289 (432)
Q Consensus 216 ~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~--~d 289 (432)
..-.....|+|.|+|+++++- ..|.|++++.+ .+....... .+............++++|+ +..+.++-+ .+
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~-~g~~~~v~~-~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAK-TGRKTELGE-VPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEE-CTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECC-CCcEeeecc-cCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 344578899999999988887 59999999865 333221111 11111233456899999996 314444322 44
Q ss_pred CeEEEEEccccc----cccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 290 GFVRLVDMRQSA----LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 290 g~i~iwd~~~~~----~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
+.|.-|.+..+. ........+..-+ . .....-..+.|.|||.+.++
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p---~------~~~H~g~~l~fgpDG~Lyvt 156 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIP---K------GVIHNGGRIAFGPDKMLYAG 156 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEEC---C------CSSCCCCCEEECTTSCEEEE
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCC---C------CCCccCccccCCCCCCEEEE
Confidence 556666554321 1001111121100 0 00124567999999987776
No 318
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=94.18 E-value=6.4 Score=41.22 Aligned_cols=145 Identities=9% Similarity=0.039 Sum_probs=84.6
Q ss_pred Ccceecceee--------ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCcee
Q 014005 182 FAHGYHLEWT--------ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCF 253 (432)
Q Consensus 182 ~~~~~~~~~~--------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~ 253 (432)
..+++.|+.. ..|.+.++++. ..+.........++.+++++-- +| +|++|...++++|++. .++.+
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~---~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~-~~~~L 917 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYS---DGKLQTVAEKEVKGAVYSMVEF-NG-KLLASINSTVRLYEWT-TEKEL 917 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEE---TTEEEEEEEEEESSCEEEEEEE-TT-EEEEEETTEEEEEEEC-TTSCE
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEE---CCEEEEEEEEEcCCcCEEEeee-CC-EEEEEcCCEEEEEECC-CCceE
Confidence 4566666532 25789999987 2333333334557788888744 34 6777877899999998 33333
Q ss_pred eEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEE
Q 014005 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (432)
Q Consensus 254 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~ 333 (432)
+ .+. .... .|..+.....+ ++++.|..-..|.+...+.... .+..+..+. ...+++++
T Consensus 918 ~-~~~-----~~~~-~i~~~~l~~~~-~~I~vgD~~~Sv~~~~y~~~~~---~L~~~a~D~-----------~~~~vta~ 975 (1158)
T 3ei3_A 918 R-TEC-----NHYN-NIMALYLKTKG-DFILVGDLMRSVLLLAYKPMEG---NFEEIARDF-----------NPNWMSAV 975 (1158)
T ss_dssp E-EEE-----EECC-CSCEEEEEEET-TEEEEEESSBCEEEEEEETTTT---EEEEEEECC-----------SCBCEEEE
T ss_pred E-EEe-----eccc-cEEEEEEeccC-CEEEEEEhhheEEEEEEEcCCC---eEEEEEeec-----------ccccEEEE
Confidence 3 100 1111 12222333345 7888888777777765442211 023332210 13578888
Q ss_pred EEcCCCCEEEEeeC-CeEEEEec
Q 014005 334 KFANDGQHLLSRDY-MNLKVFRY 355 (432)
Q Consensus 334 ~~s~dg~~l~s~~~-~~i~iwd~ 355 (432)
.|-.++ .++.++. |.+.+...
T Consensus 976 ~~ld~~-t~l~aD~~gNl~vl~~ 997 (1158)
T 3ei3_A 976 EILDDD-NFLGAENAFNLFVCQK 997 (1158)
T ss_dssp EEEETT-EEEEEETTSEEEEEEE
T ss_pred EEEccC-cEEEEcCCCcEEEEec
Confidence 887666 4444555 99999987
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.16 E-value=2.5 Score=36.40 Aligned_cols=150 Identities=7% Similarity=-0.003 Sum_probs=73.6
Q ss_pred CCCEEEEEeCCC-----eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec-----cce
Q 014005 126 NGSMFILSTNDK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE-----NMA 195 (432)
Q Consensus 126 ~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~ 195 (432)
++..++.|+.++ .+.+||+.+.+...+..+.... ... .+. ..++...+.|+... ...
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----------~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~ 174 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRR-----------SSV-GVG-VVGGLLYAVGGYDVASRQCLST 174 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCC-----------BSC-EEE-EETTEEEEECCEETTTTEECCC
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcc-----------cCc-eEE-EECCEEEEEeCCCCCCCccccE
Confidence 566777776553 5788898888776654432211 111 111 12344444444422 235
Q ss_pred EEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC-----CeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 196 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
+..||+... ....+..+ .........+.+ ++.+++.| .+ ..+.+||.+ ++. ...+...+. ....
T Consensus 175 ~~~yd~~~~-~W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~-~~~-W~~~~~~~~----~r~~ 244 (302)
T 2xn4_A 175 VECYNATTN-EWTYIAEM-STRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPT-TNA-WRQVADMNM----CRRN 244 (302)
T ss_dssp EEEEETTTT-EEEEECCC-SSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETT-TTE-EEEECCCSS----CCBS
T ss_pred EEEEeCCCC-cEEECCCC-ccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCC-CCC-EeeCCCCCC----cccc
Confidence 777887633 22222222 111111122222 56677776 43 468889988 333 222211111 1111
Q ss_pred eEEEEEcCCCCcEEEEEeCCC-----eEEEEEccccc
Q 014005 270 ITSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSA 301 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg-----~i~iwd~~~~~ 301 (432)
...+.+ ++ ++++.|+.++ .+.+||+.+.+
T Consensus 245 ~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 245 AGVCAV--NG-LLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CeEEEE--CC-EEEEECCcCCCcccccEEEEcCCCCe
Confidence 112222 45 7888887654 48899988654
No 320
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.78 E-value=3 Score=36.07 Aligned_cols=150 Identities=7% Similarity=0.020 Sum_probs=72.3
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec---cceEE
Q 014005 126 NGSMFILSTND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE---NMATK 197 (432)
Q Consensus 126 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~v~ 197 (432)
++..++.|+.+ ..+.+||+.+.+...+..+.... ..-..+. .++...+.|+... ...+.
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-----------~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 187 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR-----------IGVGVAV--LNRLLYAVGGFDGTNRLNSAE 187 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCC-----------BSCEEEE--ETTEEEEECCBCSSCBCCCEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccc-----------cceEEEE--ECCEEEEEeCCCCCCcCceEE
Confidence 56667776533 46888999888766654332111 1111111 1344444444322 24577
Q ss_pred EEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC-----CeEEEEeCCCCCceeeEeecCCCCcCCCCcceE
Q 014005 198 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (432)
Q Consensus 198 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (432)
.||+... ....+..+ ........++.+ ++.+++.| .+ ..+.+||++ +.. ...+. + +........
T Consensus 188 ~yd~~~~-~W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~-~~~-W~~~~--~--~p~~r~~~~ 257 (308)
T 1zgk_A 188 CYYPERN-EWRMITAM-NTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVE-TET-WTFVA--P--MKHRRSALG 257 (308)
T ss_dssp EEETTTT-EEEECCCC-SSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT-TTE-EEECC--C--CSSCCBSCE
T ss_pred EEeCCCC-eEeeCCCC-CCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCC-CCc-EEECC--C--CCCCccceE
Confidence 7887633 22222212 111111222222 56666766 43 568889988 333 22221 1 111111112
Q ss_pred EEEEcCCCCcEEEEEeCC-----CeEEEEEccccc
Q 014005 272 SAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSA 301 (432)
Q Consensus 272 ~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~ 301 (432)
.+.+ ++ ++++.|+.+ ..+.+||+.+.+
T Consensus 258 ~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 258 ITVH--QG-RIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp EEEE--TT-EEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred EEEE--CC-EEEEEcCcCCCcccceEEEEcCCCCE
Confidence 2222 45 788888754 357888887654
No 321
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=93.72 E-value=3.5 Score=36.59 Aligned_cols=110 Identities=13% Similarity=0.131 Sum_probs=59.6
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC---Ccceeccee
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS---FAHGYHLEW 190 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~ 190 (432)
..-..++| .|+|+++ ++..+|.|.+++ .++...+...... .........++++|+ +..++....
T Consensus 31 ~~P~~ia~--~pdG~l~-V~e~~g~I~~i~--~g~~~~~~~~~v~--------~~g~~~p~gia~~pdf~~~g~lYv~~~ 97 (352)
T 2ism_A 31 EVPWALAF--LPDGGML-IAERPGRIRLFR--EGRLSTYAELSVY--------HRGESGLLGLALHPRFPQEPYVYAYRT 97 (352)
T ss_dssp SCEEEEEE--CTTSCEE-EEETTTEEEEEE--TTEEEEEEECCCC--------CSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCceEEEE--cCCCeEE-EEeCCCeEEEEE--CCCccEeecceEe--------ecCCCCceeEEECCCCCCCCEEEEEEe
Confidence 45678999 8999854 555679999998 4443333222100 001245678889988 445544433
Q ss_pred ec-c---ceEEEEeecccccce---eeEEee--cCCCCCeeEEEeCCCCCEEEEE
Q 014005 191 TE-N---MATKIANVGNSVHAR---CQKVYP--HAHDFNINSISNNSDCETFVSA 236 (432)
Q Consensus 191 ~~-~---~~v~i~d~~~~~~~~---~~~~~~--~~~~~~i~~~~~~~~~~~l~~~ 236 (432)
.. + +.|..++........ .+..+. .........++|.|+|.++++.
T Consensus 98 ~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 98 VAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp ECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred cCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 11 1 566666665321111 111121 1112234689999999766653
No 322
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.60 E-value=3.3 Score=35.87 Aligned_cols=172 Identities=12% Similarity=0.043 Sum_probs=91.0
Q ss_pred cCCCCEEEEEeCC--------------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005 124 APNGSMFILSTND--------------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (432)
Q Consensus 124 s~~~~~l~s~~~d--------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (432)
++++.+|.-+... ..|+..++.+++...+... ....+++++.+++-..
T Consensus 61 ~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~------------------~~~~~s~~g~~Iy~~~ 122 (302)
T 3s25_A 61 NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD------------------PCIYASLIGNYIYYLH 122 (302)
T ss_dssp EECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS------------------CEEEEEEETTEEEEEE
T ss_pred EEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC------------------CccEEEEeCCEEEEEe
Confidence 5678887777543 3567777776654443221 1124556666666544
Q ss_pred eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
...++.-.||.+... +...+.+ ..+.. .+++++++.|.-. ...+|..-+++ .+....++ .+
T Consensus 123 ~~~~~~~~Iy~~~~d--Gs~~~~l-t~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~-g~~~~~l~-------~~-- 185 (302)
T 3s25_A 123 YDTQTATSLYRIRID--GEEKKKI-KNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTA-SQSEALFY-------DC-- 185 (302)
T ss_dssp ESSSSCEEEEEEETT--SCCCEEE-ESSCC----CCSEEETTEEEEECTTTCCEEEEETT-TTEEEEEE-------CS--
T ss_pred ecCCCCceEEEEECC--CCCeEEE-eCCCc----eEeeEECCEEEEEeCCCceEEEEECC-CCCEEEEe-------CC--
Confidence 111333344444332 2222333 22222 4567788888866 36778888877 33333322 22
Q ss_pred cceEEEEEcCCCCcEEEEEeCC--CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005 268 EVITSAEFHPIYCNLLAYSSSR--GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~ 345 (432)
.. ...++|++ ..|+-...+ ..|..-++..+.. ..+.. ..+ ..|+|+|++|.-+
T Consensus 186 -~~-~~~~~P~g-~~iy~t~~~~~~~I~~~~ldG~~~-----~~Lt~---------------~~~--~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 186 -NC-YKPVVLDD-TNVYYMDVNRDNAIVHVNINNPNP-----VVLTE---------------ANI--EHYNVYGSLIFYQ 240 (302)
T ss_dssp -CE-EEEEEEET-TEEEEEEGGGTTEEEEECSSSCCC-----EECSC---------------SCE--EEEEEETTEEEEE
T ss_pred -Cc-cceeeecC-CEEEEEEcCCCcEEEEEECCCCCe-----EEEeC---------------CCc--ceEEECCCEEEEE
Confidence 11 12466888 666666543 3566666665442 44443 223 3478888888765
Q ss_pred eC---CeEEEEec
Q 014005 346 DY---MNLKVFRY 355 (432)
Q Consensus 346 ~~---~~i~iwd~ 355 (432)
++ +.|..-++
T Consensus 241 ~~~~~~~i~~~~~ 253 (302)
T 3s25_A 241 RGGDNPALCVVKN 253 (302)
T ss_dssp ECSSSCEEEEEET
T ss_pred ECCCCcEEEEEEC
Confidence 32 45555555
No 323
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.49 E-value=0.41 Score=39.10 Aligned_cols=112 Identities=13% Similarity=-0.008 Sum_probs=63.7
Q ss_pred CCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCc--CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 014005 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM--DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (432)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd 296 (432)
..+..++|+|+|.+.++ .+|.++-.+.. +.....-+.. ...+ .+... ...+.|+|+| .+.++ .||.|.-++
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~-t~~~~~W~~s-~t~IG~~Gw~~-F~a~~fD~~G-~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPP-THDNDNWMGR-AKKIGNGGWNQ-FQFLFFDPNG-YLYAV--SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCC-CSTTCCHHHH-CEEEECSCGGG-CSEEEECTTS-CEEEE--ETTEEEEES
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCC-CCCccccccc-ccEeccccccc-ceEEEECCCC-CEEEe--CCCEEEEeC
Confidence 47779999999987777 78876665554 2111100000 0000 01111 4789999999 66665 669988777
Q ss_pred ccccccccccc---eeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEE
Q 014005 297 MRQSALCDHSA---RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK 351 (432)
Q Consensus 297 ~~~~~~~~~~~---~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~ 351 (432)
-.+... ...+ ..+..+ .=..+..+.|.|+|.+-+.. ++.++
T Consensus 114 pP~~~~-~~Wl~~a~~vg~~------------gw~~~~~lff~p~G~Lyav~-dg~ly 157 (236)
T 1tl2_A 114 PPQSDT-DNWIARATEVGSG------------GWSGFKFLFFHPNGYLYAVH-GQQFY 157 (236)
T ss_dssp CCCSTT-CCHHHHSEEEECS------------SGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred CCcCCC-CceeccccEeccC------------CCCceEEEEECCCceEEEEe-CCcEE
Confidence 543221 0000 000000 01467899999999988877 77643
No 324
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.46 E-value=3.8 Score=36.22 Aligned_cols=247 Identities=11% Similarity=0.075 Sum_probs=120.8
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeee----eecCCcccccc
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE----FQSHEPEFDYL 107 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~h~~~~~~~ 107 (432)
-+.-+.|+|.|+|.++++-...|.|++++.++++.. .+.. +....
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-------------------------~v~~~~~v~~~g~------ 79 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-------------------------ELGEVPGVSPSGE------ 79 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-------------------------EEEECTTCCCBTT------
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-------------------------eecccCceeecCC------
Confidence 346789999999998877655889988875544310 0111 11112
Q ss_pred chhhhhcceeEEEEEEcCC----CCEEEEE--eCCCeEEEEEccCc-----c---eeeee-ecCCCCccccccccccccc
Q 014005 108 KSLEIEEKINRVRWCAAPN----GSMFILS--TNDKTIKLWKVRDQ-----K---VKKIK-EMDHFPFVSSENTLLAEKN 172 (432)
Q Consensus 108 ~~~~~~~~v~~l~~~~s~~----~~~l~s~--~~d~~i~iwd~~~~-----~---~~~~~-~~~~~~~~~~~~~~~~~~~ 172 (432)
.....|++ +|+ +.+.++- ..++.|.-|.+..+ . .+.+. .+.. .....
T Consensus 80 ------~GllGia~--~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~----------~~~H~ 141 (347)
T 3das_A 80 ------GGLLGIAL--SPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK----------GVIHN 141 (347)
T ss_dssp ------BSEEEEEE--CTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC----------CSSCC
T ss_pred ------CCceeeEe--ccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC----------CCCcc
Confidence 66789999 774 4333332 23456666666542 1 11111 1110 01123
Q ss_pred cccccCCCCCcceecceeec---------cceEEEEeeccccc---ce---eeEEeecCCCCCeeEEEeCCCCCEEEEE-
Q 014005 173 FMNEHNPPSFAHGYHLEWTE---------NMATKIANVGNSVH---AR---CQKVYPHAHDFNINSISNNSDCETFVSA- 236 (432)
Q Consensus 173 i~~~~~~~~~~~~~~~~~~~---------~~~v~i~d~~~~~~---~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~- 236 (432)
-..+.|.+++.+.++.+... ...=+|+.+..... .. ....+..+|. ....++|+|+|.+.++-
T Consensus 142 g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~ 220 (347)
T 3das_A 142 GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEF 220 (347)
T ss_dssp CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEEC
T ss_pred CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEec
Confidence 45688899887655533200 01122333322111 00 0122323443 46689999988766653
Q ss_pred -cCCeEEEEeCCCCCcee----eEee------cCCC-CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccc
Q 014005 237 -DDLRINLWNLEISDQCF----NIVD------MKPS-NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD 304 (432)
Q Consensus 237 -~d~~i~lwd~~~~~~~~----~~~~------~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~ 304 (432)
.|+.-.|--+. .+... ..-. ..|. .+..+......++|.. + .++...-..+.|....+.......
T Consensus 221 g~~~~deln~i~-~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~~~~ 297 (347)
T 3das_A 221 GQDTWDELNAIK-PGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTAAAA 297 (347)
T ss_dssp CSSSCEEEEEEC-TTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTEESS
T ss_pred CCCCCceeeEEc-CCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc-C-ceeeccccCCEEEEEEecCCceec
Confidence 33322332222 11110 0000 0000 0011223566777773 4 666666566666666665433211
Q ss_pred ccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 305 ~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
.....+.+ ....+.+++..|||.++++
T Consensus 298 ~~e~~l~~-------------~~gR~~dv~~~pDG~lyv~ 324 (347)
T 3das_A 298 DPQAFLEG-------------EYGRLRTVAPAGGDKLWLV 324 (347)
T ss_dssp CCEEESTT-------------TSSCEEEEEEEETTEEEEE
T ss_pred ceEEeecC-------------CCCCccEEEECCCCcEEEE
Confidence 11122222 1367899999999976665
No 325
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.27 E-value=3 Score=38.56 Aligned_cols=117 Identities=11% Similarity=0.057 Sum_probs=61.9
Q ss_pred CCCeeEEEeCCCCCEEEEEc-CCeEEEEeCCCCCceeeEeecCCCCc-CCCCcceEEEEEcCC---CCcEEEEEeC----
Q 014005 218 DFNINSISNNSDCETFVSAD-DLRINLWNLEISDQCFNIVDMKPSNM-DDLTEVITSAEFHPI---YCNLLAYSSS---- 288 (432)
Q Consensus 218 ~~~i~~~~~~~~~~~l~~~~-d~~i~lwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~---~~~~l~~~~~---- 288 (432)
-.....|+|.|+|+++++-. .+.|++++.. .+.......+..... .........++|+|+ +..+.++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~-~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPE-SGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECC-CCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34677999999999888774 4578888765 333222221111100 112456789999995 4144444332
Q ss_pred --------CCeEEEEEcccccc-ccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005 289 --------RGFVRLVDMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (432)
Q Consensus 289 --------dg~i~iwd~~~~~~-~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 344 (432)
...|.-++...+.. .......+..-+ . ........|+|.|||.+.++
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p---~------~~~H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP---S------SKDHQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC---C------CSSCCEEEEEECTTSCEEEE
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC---C------CCCCCCCeEeECCCCeEEEE
Confidence 23455555542210 000011121100 0 00135688999999987776
No 326
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.11 E-value=5.4 Score=36.88 Aligned_cols=116 Identities=11% Similarity=0.131 Sum_probs=61.2
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC---Ccceeccee
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS---FAHGYHLEW 190 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~ 190 (432)
.....|+| .|+|+++++-...+.|.+++..++....+..+.... ......+....++++|+ ...++....
T Consensus 27 ~~P~~~a~--~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~-----~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 27 NKPHALLW--GPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIV-----NDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp SSEEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC-----CCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCceEEEE--cCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccc-----cccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 45679999 889986666544457888876655544433322100 00011356678999986 444544433
Q ss_pred ec-----------cceEEEEeecccc----cce-eeEEeecCCCCCeeEEEeCCCCCEEEEE
Q 014005 191 TE-----------NMATKIANVGNSV----HAR-CQKVYPHAHDFNINSISNNSDCETFVSA 236 (432)
Q Consensus 191 ~~-----------~~~v~i~d~~~~~----~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 236 (432)
.. ...|.-++..... ..+ .+..+..........|+|.|+|.+.++.
T Consensus 100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE
T ss_pred ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEE
Confidence 10 1234444433210 111 1112212223357899999999877654
No 327
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=92.93 E-value=4.2 Score=35.13 Aligned_cols=150 Identities=5% Similarity=-0.039 Sum_probs=72.8
Q ss_pred CCCEEEEEeC----C-----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec---c
Q 014005 126 NGSMFILSTN----D-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE---N 193 (432)
Q Consensus 126 ~~~~l~s~~~----d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~ 193 (432)
++..++.|+. + +.+.+||+.+.+...+..+.... .....+. .++...+.|+... .
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----------~~~~~~~--~~~~iyv~GG~~~~~~~ 136 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPR-----------NRIGVGV--IDGHIYAVGGSHGCIHH 136 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCC-----------BTCEEEE--ETTEEEEECCEETTEEC
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCc-----------cccEEEE--ECCEEEEEcCCCCCccc
Confidence 5666677665 2 46888999888766654332211 1111111 1344445444322 2
Q ss_pred ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC-----CeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
..+.+||.... ....+..+ ......-.++.+ ++.+++.| .+ ..+.+||+. +.. ...+... ....
T Consensus 137 ~~~~~yd~~~~-~W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~-~~~-W~~~~~~----p~~r 206 (308)
T 1zgk_A 137 NSVERYEPERD-EWHLVAPM-LTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPE-RNE-WRMITAM----NTIR 206 (308)
T ss_dssp CCEEEEETTTT-EEEECCCC-SSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETT-TTE-EEECCCC----SSCC
T ss_pred ccEEEECCCCC-eEeECCCC-CccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCC-CCe-EeeCCCC----CCcc
Confidence 35777887632 22222112 111111122222 56666666 43 458888887 332 2222111 1111
Q ss_pred cceEEEEEcCCCCcEEEEEeCC-----CeEEEEEccccc
Q 014005 268 EVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSA 301 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~ 301 (432)
..-..+.+ ++ ++++.|+.+ ..+.+||+.+.+
T Consensus 207 ~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 207 SGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp BSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ccceEEEE--CC-EEEEEeCCCCCCccceEEEEeCCCCc
Confidence 11222333 45 788888765 468999988754
No 328
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.55 E-value=3.9 Score=36.20 Aligned_cols=19 Identities=16% Similarity=0.031 Sum_probs=14.5
Q ss_pred CeEEEEEccCcceeeeeec
Q 014005 137 KTIKLWKVRDQKVKKIKEM 155 (432)
Q Consensus 137 ~~i~iwd~~~~~~~~~~~~ 155 (432)
+.+.+||..+.+...+..+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~ 186 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGES 186 (357)
T ss_dssp CEEEEEETTTTEEEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCC
Confidence 5799999998887766543
No 329
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=92.53 E-value=6.3 Score=41.80 Aligned_cols=170 Identities=13% Similarity=0.204 Sum_probs=95.2
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec-
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE- 192 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~- 192 (432)
..|.--.|. +.+.|+..+ +..|..|++.+.. .+..-+..+. ...+..|..-..+++.++++..+...
T Consensus 106 e~VvfWkWi---s~~~l~lVT-~~aVyHW~~~~~s-~P~k~fdR~~-------~L~~~QIinY~~d~~~kW~~l~gi~~~ 173 (1630)
T 1xi4_A 106 DDVTFWKWI---SLNTVALVT-DNAVYHWSMEGES-QPVKMFDRHS-------SLAGCQIINYRTDAKQKWLLLTGISAQ 173 (1630)
T ss_pred CCceEEEec---CCCeeEEEc-CCeEEEeccCCCC-ccHHHHhcch-------hcccCeeEEeeeCCCCCeEEEEeeccC
Confidence 667777783 233455444 3579999996522 2222222221 11235677777788888887665532
Q ss_pred ----cceEEEEeecccccceeeEEeecCCCCCeeEEEeC--CC-CCEEEEE-c---CCeEEEEeCCCC--C-cee--eEe
Q 014005 193 ----NMATKIANVGNSVHARCQKVYPHAHDFNINSISNN--SD-CETFVSA-D---DLRINLWNLEIS--D-QCF--NIV 256 (432)
Q Consensus 193 ----~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~~~l~~~-~---d~~i~lwd~~~~--~-~~~--~~~ 256 (432)
.|.+.+|..+.. ..+.+ .||-.....+... +. ...++.+ . .+.+++-++... + ..+ +..
T Consensus 174 ~~~v~G~mQLyS~er~----~sQ~i-egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~ 248 (1630)
T 1xi4_A 174 QNRVVGAMQLYSVDRK----VSQPI-EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV 248 (1630)
T ss_pred CCcccceeeeeecccc----cchhh-hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccc
Confidence 578888887632 22223 4555544443332 11 2244444 2 378888888632 1 111 111
Q ss_pred ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (432)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 302 (432)
++.- .-.....-..++..++.. .++..-+.-|.|.++|+.++..
T Consensus 249 ~~~~-~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 249 DVFF-PPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred cccC-CcccccCcceEEEecccc-CEEEEEecCceEEEEecccchh
Confidence 1000 001123344577788877 7888889999999999999874
No 330
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.21 E-value=2.9 Score=39.39 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=53.2
Q ss_pred CCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceee--EeecCCC----CcCCCCcceEEEEEcCCCCcEEEEEeCCC
Q 014005 219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN--IVDMKPS----NMDDLTEVITSAEFHPIYCNLLAYSSSRG 290 (432)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~--~~~~~~~----~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 290 (432)
.....+.++|||++++++ -+.++.++|++.-...+. ++ ++. .-....-.....+|+++| +...+--.|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~--~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidS 399 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLA--DPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDS 399 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCS--CGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTT
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcccc--CcccceEeeccCCCcccEEEECCCC-ceEeeeeecc
Confidence 355678899999998876 699999999982111000 00 000 001123456789999998 7666777999
Q ss_pred eEEEEEcccc
Q 014005 291 FVRLVDMRQS 300 (432)
Q Consensus 291 ~i~iwd~~~~ 300 (432)
.|.-|++...
T Consensus 400 qvvkWni~~a 409 (638)
T 3sbq_A 400 QVVKWNMEEA 409 (638)
T ss_dssp EEEEEEHHHH
T ss_pred eEEEEeccHH
Confidence 9999999853
No 331
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=91.79 E-value=5.8 Score=34.11 Aligned_cols=150 Identities=5% Similarity=-0.033 Sum_probs=73.7
Q ss_pred CCCEEEEEeCC----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee-c---cceEE
Q 014005 126 NGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT-E---NMATK 197 (432)
Q Consensus 126 ~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~---~~~v~ 197 (432)
++..++.|+.+ ..+.+||+.+++...+..+.... .....+ ..++...+.|+.. . ...+.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----------~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~ 121 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR-----------DSLAAC--AAEGKIYTSGGSEVGNSALYLFE 121 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC-----------BSCEEE--EETTEEEEECCBBTTBSCCCCEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc-----------cceeEE--EECCEEEEECCCCCCCcEeeeEE
Confidence 56677777654 67889999988876664433211 111111 1244455555442 1 24677
Q ss_pred EEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c---------CCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 198 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 198 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~---------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
+||.... ....+..+ ......-.++. -++++++.| . -..+.+||.. +.. ...+... ....
T Consensus 122 ~~d~~~~-~W~~~~~~-p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~-~~~-W~~~~~~----p~~r 191 (306)
T 3ii7_A 122 CYDTRTE-SWHTKPSM-LTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPA-TET-WTELCPM----IEAR 191 (306)
T ss_dssp EEETTTT-EEEEECCC-SSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETT-TTE-EEEECCC----SSCC
T ss_pred EEeCCCC-ceEeCCCC-cCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCC-CCe-EEECCCc----cchh
Confidence 8887643 22222222 11111111222 255666665 3 2447888988 333 2222111 1111
Q ss_pred cceEEEEEcCCCCcEEEEEeCC-----CeEEEEEccccc
Q 014005 268 EVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSA 301 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~ 301 (432)
..-..+.+ ++ ++++.|+.+ ..+.+||+.+.+
T Consensus 192 ~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 192 KNHGLVFV--KD-KIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp BSCEEEEE--TT-EEEEECCEETTEEBCCEEEEETTTTE
T ss_pred hcceEEEE--CC-EEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 11122222 45 777777654 358899988754
No 332
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.33 E-value=12 Score=36.82 Aligned_cols=156 Identities=10% Similarity=0.054 Sum_probs=78.3
Q ss_pred CCCEEEEEeCC------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEE
Q 014005 126 NGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIA 199 (432)
Q Consensus 126 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~ 199 (432)
++..++.|+.+ +.+.+||..+..+..+..+.... ..- .+....++...+.|+....+.+.+|
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R-----------~~h-~~~~~~~~~iyv~GG~~~~~~v~~y 518 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR-----------FRH-SACSLPDGNVLILGGVTEGPAMLLY 518 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC-----------BSC-EEEECTTSCEEEECCBCSSCSEEEE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc-----------ccc-eEEEEcCCEEEEECCCCCCCCEEEE
Confidence 67777777643 35788999888766654332111 111 1111125556666665333378888
Q ss_pred eecccccceeeEE---eecCCCCCeeEEEeCCC-CCEEEEE-c--C-----CeEEEEeCCCCCce-----eeEeecCCCC
Q 014005 200 NVGNSVHARCQKV---YPHAHDFNINSISNNSD-CETFVSA-D--D-----LRINLWNLEISDQC-----FNIVDMKPSN 262 (432)
Q Consensus 200 d~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~-~~~l~~~-~--d-----~~i~lwd~~~~~~~-----~~~~~~~~~~ 262 (432)
|.... ....+.. . ......-.++.+..+ +..++.| . + +.+..||+. ++.- ...+...+.
T Consensus 519 d~~t~-~W~~~~~~g~~-p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~-~~~w~~~~~W~~~~~~p~- 594 (695)
T 2zwa_A 519 NVTEE-IFKDVTPKDEF-FQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYD-AENATEPITVIKKLQHPL- 594 (695)
T ss_dssp ETTTT-EEEECCCSSGG-GGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEEC-TTCSSCCEEEEEEEECGG-
T ss_pred ECCCC-ceEEccCCCCC-CCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEcc-CCccccceEEEEcCCCCC-
Confidence 87743 2222211 1 111222233555554 6666666 4 2 358889988 3331 111110000
Q ss_pred cCCCCcceEEEEEcCCCCcEEEEEeCC--------CeEEEEEccccc
Q 014005 263 MDDLTEVITSAEFHPIYCNLLAYSSSR--------GFVRLVDMRQSA 301 (432)
Q Consensus 263 ~~~~~~~v~~~~~~p~~~~~l~~~~~d--------g~i~iwd~~~~~ 301 (432)
... ... ++....++ ++++.|+.+ ..+.+||+.+.+
T Consensus 595 -~~R-~~~-~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 595 -FQR-YGS-QIKYITPR-KLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp -GCC-BSC-EEEEEETT-EEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred -CCc-ccc-eEEEeCCC-EEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 111 111 22333335 778888743 468999998755
No 333
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=91.18 E-value=6.6 Score=33.64 Aligned_cols=150 Identities=8% Similarity=0.034 Sum_probs=72.8
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec---cceEE
Q 014005 126 NGSMFILSTND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE---NMATK 197 (432)
Q Consensus 126 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~v~ 197 (432)
++..++.|+.+ ..+.+||..+.+...+..+.... .....+. .++...+.|+... -..+.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----------~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 127 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRR-----------STLGAAV--LNGLLYAVGGFDGSTGLSSVE 127 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCC-----------BSCEEEE--ETTEEEEEEEECSSCEEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccc-----------cceEEEE--ECCEEEEEcCCCCCccCceEE
Confidence 56677777654 45889999888776665433211 1111111 2344445554422 13566
Q ss_pred EEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC-------CeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 198 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-------LRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 198 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d-------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
+||+... ....+..+ ....... +++. -+++.++.| .+ ..+.+||+. ++. ...+...+.....
T Consensus 128 ~~d~~~~-~W~~~~~~-p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~-~~~-W~~~~~~p~~r~~---- 197 (302)
T 2xn4_A 128 AYNIKSN-EWFHVAPM-NTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNAT-TNE-WTYIAEMSTRRSG---- 197 (302)
T ss_dssp EEETTTT-EEEEECCC-SSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETT-TTE-EEEECCCSSCCBS----
T ss_pred EEeCCCC-eEeecCCC-CCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCC-CCc-EEECCCCcccccc----
Confidence 7777632 22222222 1111111 2222 255666665 32 347888887 333 2222111111111
Q ss_pred eEEEEEcCCCCcEEEEEeCC-----CeEEEEEccccc
Q 014005 270 ITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSA 301 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~ 301 (432)
...+.+ ++ ++++.|+.+ ..+.+||+.+.+
T Consensus 198 ~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 198 AGVGVL--NN-LLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp CEEEEE--TT-EEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred ccEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCC
Confidence 122222 45 788888764 368899988754
No 334
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=90.19 E-value=7 Score=36.17 Aligned_cols=60 Identities=13% Similarity=0.034 Sum_probs=35.8
Q ss_pred CCeeEEEeCCCCC--EEEEEcCCeEEEEeCCCCCceeeEeecCCCCcC----CCCcceEEEEEcCC
Q 014005 219 FNINSISNNSDCE--TFVSADDLRINLWNLEISDQCFNIVDMKPSNMD----DLTEVITSAEFHPI 278 (432)
Q Consensus 219 ~~i~~~~~~~~~~--~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~p~ 278 (432)
.....|+|.|++. ++++-..|.|++++.+.......+.++...... ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4677999999985 555558899999976511111111111111111 12456889999996
No 335
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=88.42 E-value=11 Score=32.37 Aligned_cols=29 Identities=7% Similarity=0.161 Sum_probs=19.6
Q ss_pred CCCEEEEEeCC--------CeEEEEEccCcceeeeee
Q 014005 126 NGSMFILSTND--------KTIKLWKVRDQKVKKIKE 154 (432)
Q Consensus 126 ~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~ 154 (432)
++..++.|+.+ ..+.+||..+.+...+..
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 134 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP 134 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC
Confidence 56666776632 468899998887665543
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=86.16 E-value=8.7 Score=33.78 Aligned_cols=113 Identities=7% Similarity=-0.022 Sum_probs=56.1
Q ss_pred CEEEEEeCCCeEEEEEccCcceeeeeecCC-CCccccccccccccccccccCCCCCcceecc-eeeccceEEEEeecccc
Q 014005 128 SMFILSTNDKTIKLWKVRDQKVKKIKEMDH-FPFVSSENTLLAEKNFMNEHNPPSFAHGYHL-EWTENMATKIANVGNSV 205 (432)
Q Consensus 128 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~v~i~d~~~~~ 205 (432)
..++.++.||.|.-.|..+|+..-...... .+.+ ....-....++..++.. .. +|.+..++..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~----------~~~~~~~~~~~~~~vv~p~~--dG~l~a~~~~--- 75 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLI----------EIQEPSRLETYETLIIEPFG--DGNIYYFNAH--- 75 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSE----------ECCCSCTTTSSEEEEECCST--TTEEEEEETT---
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcE----------EecCCccccCCcEEEEEECC--CCEEEEEECC---
Confidence 467888889999988988887443332220 0100 00000000111222111 23 7888888876
Q ss_pred cceeeEEeecC---CCCCeeE---EEe-----CCCCCEEEEE-cCCeEEEEeCCCCCceeeEe
Q 014005 206 HARCQKVYPHA---HDFNINS---ISN-----NSDCETFVSA-DDLRINLWNLEISDQCFNIV 256 (432)
Q Consensus 206 ~~~~~~~~~~~---~~~~i~~---~~~-----~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~ 256 (432)
.+.....+... ...++.. ..+ ...+..+.+| .++++...|++ +++.+..+
T Consensus 76 ~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~-tG~~~W~~ 137 (339)
T 2be1_A 76 QGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINML-NGEIISAF 137 (339)
T ss_dssp TEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETT-TCCEEEEE
T ss_pred CCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECC-CCcEEEEE
Confidence 33222222110 1111111 000 0134466677 99999999999 77777766
No 337
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=85.44 E-value=17 Score=31.27 Aligned_cols=152 Identities=5% Similarity=-0.051 Sum_probs=72.7
Q ss_pred cCCCCEEEEEeC----C-------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee-
Q 014005 124 APNGSMFILSTN----D-------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT- 191 (432)
Q Consensus 124 s~~~~~l~s~~~----d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~- 191 (432)
..++..++.|+. + ..+..||..+++...+..+.... ... .+.. .++...+.|+..
T Consensus 43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----------~~~-~~~~-~~~~lyv~GG~~~ 109 (315)
T 4asc_A 43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR-----------CLF-GLGE-ALNSIYVVGGREI 109 (315)
T ss_dssp CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE-----------ESC-EEEE-ETTEEEEECCEES
T ss_pred EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch-----------hce-eEEE-ECCEEEEEeCCcC
Confidence 356777777773 1 13778888888766554332111 011 1111 133444444432
Q ss_pred -----ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-C-----CeEEEEeCCCCCceeeEeecC
Q 014005 192 -----ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-D-----LRINLWNLEISDQCFNIVDMK 259 (432)
Q Consensus 192 -----~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d-----~~i~lwd~~~~~~~~~~~~~~ 259 (432)
....+.+||.... ..+.+..+ ......- +++. .+++.++.| . + ..+.+||.. +.. ...+.
T Consensus 110 ~~~~~~~~~~~~~d~~~~-~W~~~~~~-p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~-~~~-W~~~~-- 181 (315)
T 4asc_A 110 KDGERCLDSVMCYDRLSF-KWGESDPL-PYVVYGH-TVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPK-KFE-WKELA-- 181 (315)
T ss_dssp STTCCBCCCEEEEETTTT-EEEECCCC-SSCCBSC-EEEE-ETTEEEEECCBCTTSCBCCCEEEEETT-TTE-EEECC--
T ss_pred CCCCcccceEEEECCCCC-cEeECCCC-CCcccce-eEEE-ECCEEEEEeCCCCCCcccceEEEEeCC-CCe-EEECC--
Confidence 1346778887633 22222222 1111111 2222 355666666 4 2 468888888 332 22221
Q ss_pred CCCcCCCCcceEEEEEcCCCCcEEEEEeCCC-----eEEEEEccccc
Q 014005 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSA 301 (432)
Q Consensus 260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----~i~iwd~~~~~ 301 (432)
+ +......-..+.+ ++ ++++.|+.++ .+.+||+.+.+
T Consensus 182 ~--~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 182 P--MQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp C--CSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred C--CCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEECCCCe
Confidence 1 1111111122222 45 7888887654 58888988654
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=84.95 E-value=18 Score=31.15 Aligned_cols=29 Identities=10% Similarity=0.361 Sum_probs=19.9
Q ss_pred CCCEEEEEeCC-------CeEEEEEccCcceeeeee
Q 014005 126 NGSMFILSTND-------KTIKLWKVRDQKVKKIKE 154 (432)
Q Consensus 126 ~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~ 154 (432)
++..++.|+.+ ..+.+||..+.+...+..
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~ 144 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN 144 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC
Confidence 56677777653 357888988887766543
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=84.06 E-value=20 Score=38.24 Aligned_cols=191 Identities=7% Similarity=0.110 Sum_probs=102.7
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC-cceecceeeccceEEEEeec
Q 014005 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGYHLEWTENMATKIANVG 202 (432)
Q Consensus 124 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~v~i~d~~ 202 (432)
+|..+.++.-. ..++.++|+++.. ++..+... ..|.--.|-... --+++ +..|..|++.
T Consensus 74 nP~~~iiALra-g~~lQiFnl~~k~--klks~~~~------------e~VvfWkWis~~~l~lVT-----~~aVyHW~~~ 133 (1630)
T 1xi4_A 74 NPASKVIALKA-GKTLQIFNIEMKS--KMKAHTMT------------DDVTFWKWISLNTVALVT-----DNAVYHWSME 133 (1630)
T ss_pred CCCcceEEEec-CCeEEEeehHHhh--hhcccccC------------CCceEEEecCCCeeEEEc-----CCeEEEeccC
Confidence 56666666654 6889999998776 33333332 233333332222 22222 6689999996
Q ss_pred ccccceeeEEeecCC----CCCeeEEEeCCCCCEEE-EE-c------CCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005 203 NSVHARCQKVYPHAH----DFNINSISNNSDCETFV-SA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (432)
Q Consensus 203 ~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~-~~-~------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (432)
. ...+.+.| ..| ...|..-..+++.++++ +| . .|.+.+|..+ ....+. +.||.+..
T Consensus 134 ~--~s~P~k~f-dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e--r~~sQ~-------iegha~~F 201 (1630)
T 1xi4_A 134 G--ESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQP-------IEGHAASF 201 (1630)
T ss_pred C--CCccHHHH-hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc--cccchh-------hhHhHhhh
Confidence 5 44555555 333 45677778889999877 33 2 4778888887 222222 26776655
Q ss_pred EEEEEc--CCCCcEEEEEeC---CCeEEEEEccccccccccceeeccc----ccccCCccceeeeecceeEEEEcCCCCE
Q 014005 271 TSAEFH--PIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDA----AESHGSKSFFTEIIASISDIKFANDGQH 341 (432)
Q Consensus 271 ~~~~~~--p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~h----~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 341 (432)
..+... +..+++++.+.. .+.++|.++...... ...|... ...|.. ...-.-++..|+.-..
T Consensus 202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~---~~~f~kk~~~~~~~~~~------~~Dfpv~~~vs~k~g~ 272 (1630)
T 1xi4_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG---NQPFPKKAVDVFFPPEA------QNDFPVAMQISEKHDV 272 (1630)
T ss_pred heeccCCCCCCceEEEEEEecCCCceEEEEecCCCccC---CCCCccccccccCCccc------ccCcceEEEeccccCE
Confidence 444443 222134443332 268888888542000 0111110 001100 0122336677776444
Q ss_pred EEEe-eCCeEEEEec
Q 014005 342 LLSR-DYMNLKVFRY 355 (432)
Q Consensus 342 l~s~-~~~~i~iwd~ 355 (432)
+..- ..|.+.++|+
T Consensus 273 iy~itk~G~~~~~d~ 287 (1630)
T 1xi4_A 273 VFLITKYGYIHLYDL 287 (1630)
T ss_pred EEEEecCceEEEEec
Confidence 4443 3399999999
No 340
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=82.61 E-value=29 Score=31.74 Aligned_cols=192 Identities=7% Similarity=0.082 Sum_probs=110.0
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC-CcceecceeeccceEEEEeec
Q 014005 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS-FAHGYHLEWTENMATKIANVG 202 (432)
Q Consensus 124 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~v~i~d~~ 202 (432)
+|..+.++.-. ..++.++|+++.. ++..+.... .|.--.|-.. .--+++ +..|..|++.
T Consensus 74 nP~~~iiALra-g~~lQiFnle~K~--klks~~~~e------------~VvfWkWis~~~l~lVT-----~taVyHWsi~ 133 (494)
T 1bpo_A 74 NPASKVIALKA-GKTLQIFNIEMKS--KMKAHTMTD------------DVTFWKWISLNTVALVT-----DNAVYHWSME 133 (494)
T ss_dssp CSSSSCEEEEE-TTEEEEEETTTTE--EEEEEECSS------------CCCEEEEEETTEEEEEC-----SSEEEEEESS
T ss_pred CCCCcEEEEec-CCeEEEEchHHhh--hhcceecCC------------CceEEEecCCCeEEEEc-----CCeeEEeccc
Confidence 67777777665 6899999999877 333333222 3322223221 111222 6789999987
Q ss_pred ccccceeeEEeecCC----CCCeeEEEeCCCCCEEE-EE-c------CCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005 203 NSVHARCQKVYPHAH----DFNINSISNNSDCETFV-SA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (432)
Q Consensus 203 ~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~-~~-~------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (432)
. ...+.+.| ..| ...|..-..+++.++++ +| . .|.+.+|..+ ....+.+ ++|.+..
T Consensus 134 ~--~s~P~kvF-dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e--r~~sQ~i-------eGhaa~F 201 (494)
T 1bpo_A 134 G--ESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPI-------EGHAASF 201 (494)
T ss_dssp S--SCCCEEEE-ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST--TCCEEEE-------CCSEEEE
T ss_pred C--CCCchhhe-ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc--ccccchh-------eeeeeee
Confidence 5 45677777 333 35677778899999877 33 2 4678899998 3333443 8887766
Q ss_pred EEEEEcCC--CCcEEEEEeCC---CeEEEEEcccc---ccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005 271 TSAEFHPI--YCNLLAYSSSR---GFVRLVDMRQS---ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (432)
Q Consensus 271 ~~~~~~p~--~~~~l~~~~~d---g~i~iwd~~~~---~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 342 (432)
-.+.+.-+ ..++|+.+... ++++|.++... ..... .+...- ...|... .+-.-++..|+.-..+
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~-kk~vdv-~fppe~~------~DFPvamqvs~kygvi 273 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-KKAVDV-FFPPEAQ------NDFPVAMQISEKHDVV 273 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC-CEEEEC-CCCTTST------TCCEEEEEEETTTTEE
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc-ceeeee-eCCcccc------cCceeEEEecccCCEE
Confidence 55555321 11455555443 78899888532 11000 111111 1111111 1233467778765555
Q ss_pred EEeeC-CeEEEEec
Q 014005 343 LSRDY-MNLKVFRY 355 (432)
Q Consensus 343 ~s~~~-~~i~iwd~ 355 (432)
..-+. |.+.+||+
T Consensus 274 yviTK~G~i~lyDl 287 (494)
T 1bpo_A 274 FLITKYGYIHLYDL 287 (494)
T ss_dssp EEEETTSEEEEEET
T ss_pred EEEecCceEEEEec
Confidence 55444 99999999
No 341
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=82.43 E-value=25 Score=30.86 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=17.5
Q ss_pred CEEEEecccceEEEEEecCCcC
Q 014005 45 DYLAVGDRGGRVILFETVGGKN 66 (432)
Q Consensus 45 ~~l~t~~~dg~i~iw~~~~~~~ 66 (432)
.+++.++.||.|.-+|.++++.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~ 32 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI 32 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE
T ss_pred CEEEEEeCCCeEEEEECCCCcE
Confidence 4677888899999888888764
No 342
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.13 E-value=33 Score=35.07 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=31.9
Q ss_pred CeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecC
Q 014005 220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (432)
Q Consensus 220 ~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~ 259 (432)
.+.+++..++..++.+- .|+++++|++. +++++...++.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~-t~~~v~t~dL~ 276 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLS-TNQCVETIELS 276 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETT-TTEEEEEEECC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECC-CCCeEeeeccc
Confidence 56677777787788777 99999999999 78888887664
No 343
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=75.14 E-value=42 Score=29.37 Aligned_cols=192 Identities=7% Similarity=0.083 Sum_probs=107.9
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc-ceecceeeccceEEEEeec
Q 014005 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHLEWTENMATKIANVG 202 (432)
Q Consensus 124 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~v~i~d~~ 202 (432)
+|..+.+|.-. ...+.++|+++++ ++..+... ..|.--.|-.... -+++ +..|..|++.
T Consensus 75 nP~~~ViALra-g~~LQiFnletK~--klks~~~~------------e~VvfWkWis~~~L~lVT-----~taVyHWs~~ 134 (365)
T 2xzh_A 75 NPASKVIALKA-GKTLQIFNIEMKS--KMKAHTMT------------DDVTFWKWISLNTVALVT-----DNAVYHWSME 134 (365)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTTE--EEEEEECS------------SCEEEEEECSSSEEEEEE-----SSEEEEEESS
T ss_pred CCCccEEEEec-CCeEEEechHHhh--hhcceecC------------CccEEEEecCCCeEEEEc-----CCcEEEEccc
Confidence 67777777765 6889999999887 33333322 2333333322222 2222 6789999987
Q ss_pred ccccceeeEEeecCC----CCCeeEEEeCCCCCEEE-EE-c------CCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005 203 NSVHARCQKVYPHAH----DFNINSISNNSDCETFV-SA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (432)
Q Consensus 203 ~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~-~~-~------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 270 (432)
. ...+.+.+ ..| ...|..-..+++.++++ +| . .|.+.+|..+ ....+.+ ++|.+..
T Consensus 135 ~--~s~P~kvF-dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e--r~~sQ~i-------eGhaa~F 202 (365)
T 2xzh_A 135 G--ESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPI-------EGHAASF 202 (365)
T ss_dssp T--TCCCEEEE-ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT--TTEEEEE-------CCSEEEE
T ss_pred C--CCCCceee-ecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec--cccccee-------eeeeeee
Confidence 5 45677776 333 35677778899999877 33 2 4678899998 3344444 7887655
Q ss_pred EEEEEcCC--CCcEEEEEeCC---CeEEEEEcccc---ccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005 271 TSAEFHPI--YCNLLAYSSSR---GFVRLVDMRQS---ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (432)
Q Consensus 271 ~~~~~~p~--~~~~l~~~~~d---g~i~iwd~~~~---~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 342 (432)
-.+.+.-+ ..++|+.+... ++++|.++... ..... .+...- ...|... .+-.-++..|+.-..+
T Consensus 203 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~-kk~vdi-~fppea~------~DFPVamqvs~kygvi 274 (365)
T 2xzh_A 203 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-KKAVDV-FFPPEAQ------NDFPVAMQISEKHDVV 274 (365)
T ss_dssp EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCC-CEEEEE-CCCTTCT------TCCEEEEEEETTTTEE
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcc-ccccee-eCCcccc------CCceEEEEecccCCEE
Confidence 44444321 11344444332 58888887432 11000 011111 0111110 1223467777765555
Q ss_pred EEeeC-CeEEEEec
Q 014005 343 LSRDY-MNLKVFRY 355 (432)
Q Consensus 343 ~s~~~-~~i~iwd~ 355 (432)
..-+. |.+++||+
T Consensus 275 yviTK~G~ihlyDl 288 (365)
T 2xzh_A 275 FLITKYGYIHLYDL 288 (365)
T ss_dssp EEEETTSEEEEEET
T ss_pred EEEeCCcEEEEEEc
Confidence 54433 99999999
No 344
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=72.02 E-value=80 Score=31.14 Aligned_cols=211 Identities=9% Similarity=-0.003 Sum_probs=101.7
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (432)
..|.++.. ..+|.+.+ |+.+ -+.+++..+++........... .......|.++....++. +..|+. .
T Consensus 232 ~~i~~i~~--d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~------~~l~~~~i~~i~~D~~g~-lWiGT~--~ 298 (758)
T 3ott_A 232 NSIKSLAL--DGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNI------QSLTNNIIWNIFADQEHN-IWLGTD--Y 298 (758)
T ss_dssp EEEEEEEE--CTTCCEEE-EETT-EEEEECCTTSCCEEECCCTTCT------TSCSCSCEEEEEECTTCC-EEEEES--S
T ss_pred CeEEEEEE--cCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCc------CcCCcCeEEEEEEcCCCC-EEEEeC--C
Confidence 45777777 67776554 4444 5778887766544332111000 111224455665555443 333333 3
Q ss_pred ceEEEEeecccccceeeEEe---ecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCC-ceeeEeecCCCCcCCCCcc
Q 014005 194 MATKIANVGNSVHARCQKVY---PHAHDFNINSISNNSDCETFVSADDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~ 269 (432)
| +.+..... ..+..... .......|.++.-..+|.+-+...+ -+..++..... ..+..+........-....
T Consensus 299 G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 374 (758)
T 3ott_A 299 G-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNR 374 (758)
T ss_dssp S-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSC
T ss_pred c-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCC-cceeecccccccceeEEeccCCcCCCCCCCc
Confidence 3 32322110 11110000 0012346888888888865544454 46666655211 1222221100000112346
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCe
Q 014005 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN 349 (432)
Q Consensus 270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~ 349 (432)
|.++.-.+++ ++-+ |+ ++-+..+|..+++. ..+.. ...... .....|.++.-.++|++.+....+-
T Consensus 375 v~~i~~d~~g-~lWi-gt-~~GL~~~~~~~~~~-----~~~~~-~~~~~~-----~~~~~v~~i~~d~~g~lWigT~~~G 440 (758)
T 3ott_A 375 IRHIYEDKEQ-QLWI-AT-DGSINRYDYATRQF-----IHYNI-VDNTGT-----YNTNWTYYIFEDTAGQLWISTCLGG 440 (758)
T ss_dssp EEEEEECTTS-CEEE-EE-TTEEEEEETTTTEE-----EEEEE-ECCC-------CBSSSEEEEEECTTSEEEEEESSSC
T ss_pred eEEEEECCCC-CEEE-Ee-CCcHhhcCcCCCcE-----EEeec-CCCcCC-----CCCceEEEEEEcCCCCEEEEECCCc
Confidence 8899888887 6544 45 45789999887653 22221 000000 0024678888888887655433355
Q ss_pred EEEEec
Q 014005 350 LKVFRY 355 (432)
Q Consensus 350 i~iwd~ 355 (432)
+..+|.
T Consensus 441 l~~~~~ 446 (758)
T 3ott_A 441 IFVVDK 446 (758)
T ss_dssp EEEEEH
T ss_pred eEEEcc
Confidence 777765
No 345
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=71.52 E-value=51 Score=28.72 Aligned_cols=30 Identities=7% Similarity=0.311 Sum_probs=20.5
Q ss_pred CCCEEEEEeC-C---------CeEEEEEccCcceeeeeec
Q 014005 126 NGSMFILSTN-D---------KTIKLWKVRDQKVKKIKEM 155 (432)
Q Consensus 126 ~~~~l~s~~~-d---------~~i~iwd~~~~~~~~~~~~ 155 (432)
++.+++.|+. + +.+.+||+.+.+...+..+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 104 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSH 104 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCC
Confidence 5667777765 2 4688999988877665443
No 346
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=70.59 E-value=86 Score=30.91 Aligned_cols=234 Identities=9% Similarity=0.044 Sum_probs=119.5
Q ss_pred CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (432)
Q Consensus 32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 111 (432)
...|.++....+|. |..|+.+| +..||..+.+.. .......
T Consensus 62 ~~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~---------------------------~~~~~~~---------- 102 (758)
T 3ott_A 62 NTRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRYE---------------------------QPETDFP---------- 102 (758)
T ss_dssp SSCEEEEEEETTTE-EEEEETTE-EEEEETTTTEEC---------------------------CCSCCCC----------
T ss_pred CceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEEE---------------------------CcccCCC----------
Confidence 35689988887775 55555554 778887664311 0000011
Q ss_pred hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (432)
Q Consensus 112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
..|.++.. .++ .+..++.+ -+..+|..+++........ .......|.++....++..-+ ++.
T Consensus 103 --~~i~~i~~---~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~---------~~l~~~~i~~i~~d~~g~lWi-gt~- 164 (758)
T 3ott_A 103 --TDVRTMAL---QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRR---------NGLPNNTIYSIIRTKDNQIYV-GTY- 164 (758)
T ss_dssp --SCEEEEEE---ETT-EEEEEETT-EEEEEETTTCCEEEECHHH---------HCCSCSCEEEEEECTTCCEEE-EET-
T ss_pred --ceEEEEEe---cCC-cEEEEcCC-cceeEeCCCCeEEEeccCC---------CCcCCCeEEEEEEcCCCCEEE-EeC-
Confidence 34666644 355 45556555 5778888766644331100 000113455555555544333 332
Q ss_pred ccceEEEEeecccccceeeEEeecC----CCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005 192 ENMATKIANVGNSVHARCQKVYPHA----HDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (432)
Q Consensus 192 ~~~~v~i~d~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 267 (432)
+.+..++.. ..+........ ....|.++...+++..|..|.++.+..+|.. .+.. ..+. ....
T Consensus 165 --~Gl~~~~~~---~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~-~~~~-~~~~------~l~~ 231 (758)
T 3ott_A 165 --NGLCRYIPS---NGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPS-TGQI-KQTE------AFHN 231 (758)
T ss_dssp --TEEEEEETT---TTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETT-TTEE-EEEE------EEEE
T ss_pred --CCHhhCccC---CCceEEecCCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCC-CCeE-Eecc------CCCC
Confidence 335556654 22221111011 1234788888877776666623467888877 3332 2220 1123
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~ 347 (432)
..|.++...+++ .+.+ |+. +-+.+++..+++. ..+......+... ....|.++....+|.+.+....
T Consensus 232 ~~i~~i~~d~~g-~lWi-gT~-~Gl~~~~~~~~~~-----~~~~~~~~~~~~l-----~~~~i~~i~~D~~g~lWiGT~~ 298 (758)
T 3ott_A 232 NSIKSLALDGNG-DLLA-GTD-NGLYVYHNDTTPL-----QHIIHDSRNIQSL-----TNNIIWNIFADQEHNIWLGTDY 298 (758)
T ss_dssp EEEEEEEECTTC-CEEE-EET-TEEEEECCTTSCC-----EEECCCTTCTTSC-----SCSCEEEEEECTTCCEEEEESS
T ss_pred CeEEEEEEcCCC-CEEE-EeC-CceeEEecCCCcE-----EEEEcCCCCcCcC-----CcCeEEEEEEcCCCCEEEEeCC
Confidence 458888888887 6554 444 4578888776542 2222111100000 1356888888888765543332
Q ss_pred C
Q 014005 348 M 348 (432)
Q Consensus 348 ~ 348 (432)
|
T Consensus 299 G 299 (758)
T 3ott_A 299 G 299 (758)
T ss_dssp S
T ss_pred c
Confidence 4
No 347
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=64.61 E-value=67 Score=27.49 Aligned_cols=137 Identities=12% Similarity=0.009 Sum_probs=69.9
Q ss_pred EEEEcCCCCEEEEEe--CC--CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccce
Q 014005 120 RWCAAPNGSMFILST--ND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (432)
Q Consensus 120 ~~~~s~~~~~l~s~~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 195 (432)
.| ++++++|+-.. .+ ..|..-++.+...+.+... .+ .++++++..++-... ....
T Consensus 110 ~~--s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~----------------~~--~~~~~~g~~iy~t~~-g~~~ 168 (302)
T 3s25_A 110 YA--SLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH----------------YL--FTCNTSDRYFYYNNP-KNGQ 168 (302)
T ss_dssp EE--EEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS----------------CC--CCSEEETTEEEEECT-TTCC
T ss_pred EE--EEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC----------------Cc--eEeeEECCEEEEEeC-CCce
Confidence 56 56788887765 33 3455555554444433221 11 345667666664332 1345
Q ss_pred EEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-C-CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-D-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (432)
Q Consensus 196 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (432)
|...++.. ....+.+ .+ ... ..+.|++.+|+-. . + ..|..-+++ +.....+ .. ..+
T Consensus 169 Iy~~~l~g---~~~~~l~-~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ld--G~~~~~L-------t~--~~~-- 227 (302)
T 3s25_A 169 LYRYDTAS---QSEALFY-DC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNIN--NPNPVVL-------TE--ANI-- 227 (302)
T ss_dssp EEEEETTT---TEEEEEE-CS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSS--SCCCEEC-------SC--SCE--
T ss_pred EEEEECCC---CCEEEEe-CC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECC--CCCeEEE-------eC--CCc--
Confidence 55555542 2222333 22 222 3456888888865 3 3 355555665 3333332 11 122
Q ss_pred EEEcCCCCcEEEEEe--CCCeEEEEEccc
Q 014005 273 AEFHPIYCNLLAYSS--SRGFVRLVDMRQ 299 (432)
Q Consensus 273 ~~~~p~~~~~l~~~~--~dg~i~iwd~~~ 299 (432)
..|+|++ ..|..+. ..+.|..-++..
T Consensus 228 ~~~~~~g-~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 228 EHYNVYG-SLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp EEEEEET-TEEEEEECSSSCEEEEEETTS
T ss_pred ceEEECC-CEEEEEECCCCcEEEEEECCC
Confidence 3478888 6666553 235666666654
No 348
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=58.06 E-value=1.5e+02 Score=29.18 Aligned_cols=73 Identities=8% Similarity=0.043 Sum_probs=42.5
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCe--EEEEEcccccccccccee-ecccccccCCccceeeeecceeEEEEcCCCC-E
Q 014005 266 LTEVITSAEFHPIYCNLLAYSSSRGF--VRLVDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDGQ-H 341 (432)
Q Consensus 266 ~~~~v~~~~~~p~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~-~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~-~ 341 (432)
....+..+.+..+ .++++...++. +.++|+.+++.. ... +.. +. .+.+.....++++. +
T Consensus 348 ~~~~l~~~~~~~~--~l~~~~~~~~~~~l~~~~~~~g~~~---~~~~i~l-p~-----------~~~~~~~~~~~~~~~~ 410 (711)
T 4hvt_A 348 ANEVFNFISTTKD--RVFLATYDNVVAKVVTFTLENEQWT---KPVVLKL-PY-----------QNAIFGMSSYEEEEEA 410 (711)
T ss_dssp TTEEEEEEEECSS--CEEEEEEETTEEEEEEECEETTEEC---CCEEECC-CS-----------TTCEEEEECCTTCSCE
T ss_pred CCCeEEEEEEECC--EEEEEEEECCEEEEEEEECCCCceE---EEeccCC-CC-----------CeEEEEEeecCcCCEE
Confidence 3456788888875 57777777774 667777665310 122 221 00 13466666677765 4
Q ss_pred EEEe-e--C-CeEEEEec
Q 014005 342 LLSR-D--Y-MNLKVFRY 355 (432)
Q Consensus 342 l~s~-~--~-~~i~iwd~ 355 (432)
+++. + . ..+..+|+
T Consensus 411 ~~~~ss~~~P~~~~~~d~ 428 (711)
T 4hvt_A 411 LITIENSIVPPTIYLWVK 428 (711)
T ss_dssp EEEEECSSSCCEEEEECT
T ss_pred EEEEecCCCCCEEEEEeC
Confidence 4442 2 2 78888887
No 349
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=57.99 E-value=1e+02 Score=27.45 Aligned_cols=109 Identities=12% Similarity=0.093 Sum_probs=64.8
Q ss_pred eEEEEeCCCCC--ceeeEeecCCCCcCCCCcceEEEEEc---CC---CCcEEEEEe-CCCeEEEEEccccccccccceee
Q 014005 240 RINLWNLEISD--QCFNIVDMKPSNMDDLTEVITSAEFH---PI---YCNLLAYSS-SRGFVRLVDMRQSALCDHSARIL 310 (432)
Q Consensus 240 ~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~---p~---~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~ 310 (432)
+|.+||+. ++ +.++.+.+...... ..+.+..+.++ |. +..+...+. ..+.|.++|+.+++. .+.+
T Consensus 124 kLv~~DL~-t~~~~li~~y~~p~~~~~-~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s----wRv~ 197 (381)
T 3q6k_A 124 AIVAYDLK-QPNYPEVVRYYFPTRLVE-KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS----WNVT 197 (381)
T ss_dssp EEEEEESS-STTCCEEEEEECCGGGCC-CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE----EEEE
T ss_pred eEEEEECC-CCCceeEEEEECCHHhcc-cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE----EEEc
Confidence 57788888 56 77777766544333 24678888888 32 113333333 467899999998875 3433
Q ss_pred cccccccCCccce--e----eeecceeEEEEcCC----CCEEEEeeCCeEEEEec
Q 014005 311 RDAAESHGSKSFF--T----EIIASISDIKFAND----GQHLLSRDYMNLKVFRY 355 (432)
Q Consensus 311 ~~h~~~~~~~~~~--~----~~~~~v~~~~~s~d----g~~l~s~~~~~i~iwd~ 355 (432)
. +...+.....+ . .....+..++.||+ ++.|.-..-..-++|.+
T Consensus 198 ~-~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V 251 (381)
T 3q6k_A 198 H-PTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSV 251 (381)
T ss_dssp C-GGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEE
T ss_pred c-CCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEE
Confidence 2 22333311111 0 11357889999998 77777654334455555
No 350
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=57.03 E-value=48 Score=33.90 Aligned_cols=40 Identities=10% Similarity=0.207 Sum_probs=31.5
Q ss_pred cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeec
Q 014005 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM 155 (432)
Q Consensus 114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 155 (432)
..+.++.. .++..++++-+.|+++|+|++.++++.....+
T Consensus 236 ~~~~~~~~--~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIF--LSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEE--ETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEee--cCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 34566666 67888999999999999999999986555443
No 351
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=54.37 E-value=31 Score=32.97 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=39.4
Q ss_pred ceEEEEEcCCCCcEEEEEeCC------------CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc
Q 014005 269 VITSAEFHPIYCNLLAYSSSR------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s 336 (432)
..-.|+|+|.| .++++-..+ +.+.+.+..++++ .+.+.+. . ...++.++|+
T Consensus 477 ~PDNL~fd~~G-~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~----~rf~~~P-~-----------gaE~TG~~fs 539 (592)
T 3zwu_A 477 SPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI----RRFMVGP-I-----------GCEVTGISFS 539 (592)
T ss_dssp CEEEEEECTTC-CEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCE----EEEEECC-T-----------TCEEEEEEEC
T ss_pred CCcceEECCCC-CEEEEecCCCcccccccccccceEEEEeCCCCeE----EEEEeCC-C-----------CccCcCeeEC
Confidence 45678999999 766654322 2355556666664 3444441 1 4689999999
Q ss_pred CCCCEEEEe
Q 014005 337 NDGQHLLSR 345 (432)
Q Consensus 337 ~dg~~l~s~ 345 (432)
||++.|...
T Consensus 540 pDg~tlfvn 548 (592)
T 3zwu_A 540 PDQKTLFVG 548 (592)
T ss_dssp TTSSEEEEE
T ss_pred CCCCEEEEE
Confidence 999887664
No 352
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=53.01 E-value=1.1e+02 Score=26.09 Aligned_cols=152 Identities=5% Similarity=-0.052 Sum_probs=70.2
Q ss_pred cCCCCEEEEEeC----CC-------eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005 124 APNGSMFILSTN----DK-------TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (432)
Q Consensus 124 s~~~~~l~s~~~----d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 192 (432)
..++..++.|+. ++ .+..+|..+.+...+..+.... ... .+. ..++...+.|+...
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----------~~~-~~~-~~~~~iyv~GG~~~ 120 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR-----------CLF-GLG-EVDDKIYVVAGKDL 120 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB-----------CSC-EEE-EETTEEEEEEEEBT
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc-----------ccc-ceE-EECCEEEEEcCccC
Confidence 356777777773 12 2778888887766553332111 001 111 11344445554421
Q ss_pred -----cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-C-----CeEEEEeCCCCCceeeEeecCC
Q 014005 193 -----NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-D-----LRINLWNLEISDQCFNIVDMKP 260 (432)
Q Consensus 193 -----~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d-----~~i~lwd~~~~~~~~~~~~~~~ 260 (432)
...+.+||.... ....+..+ ......- +++. .++.+++.| . + ..+.+||.. +.. ...+...+
T Consensus 121 ~~~~~~~~~~~yd~~~~-~W~~~~~~-p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~-~~~-W~~~~~~p 194 (318)
T 2woz_A 121 QTEASLDSVLCYDPVAA-KWSEVKNL-PIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPK-KGD-WKDLAPMK 194 (318)
T ss_dssp TTCCEEEEEEEEETTTT-EEEEECCC-SSCEESC-EEEE-ETTEEEEECCEESSSCBCCCEEEEETT-TTE-EEEECCCS
T ss_pred CCCcccceEEEEeCCCC-CEeECCCC-CCccccc-EEEE-ECCEEEEEcCCCCCCCccceEEEEcCC-CCE-EEECCCCC
Confidence 235677777632 22222111 1111111 1222 356666666 3 2 358889988 333 22221111
Q ss_pred CCcCCCCcceEEEEEcCCCCcEEEEEeCC-----CeEEEEEccccc
Q 014005 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSA 301 (432)
Q Consensus 261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~ 301 (432)
.....| ..+.+ ++ ++++.|+.+ ..+.+||+.+.+
T Consensus 195 ~~r~~~----~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 195 TPRSMF----GVAIH--KG-KIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp SCCBSC----EEEEE--TT-EEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CCcccc----eEEEE--CC-EEEEEcCcCCCCccceEEEEECCCCe
Confidence 111111 22222 45 777777743 357788887654
No 353
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=49.95 E-value=62 Score=30.70 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=39.8
Q ss_pred cceEEEEEcCCCCcEEEEEeC------------CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEE
Q 014005 268 EVITSAEFHPIYCNLLAYSSS------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (432)
Q Consensus 268 ~~v~~~~~~p~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~ 335 (432)
+....|.|+++| .+.++... .+.|..++..++++ ...+.. +. ...++.++|
T Consensus 476 nsPDnL~fd~~G-~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel----~~fl~~-P~-----------~aEpnGiaf 538 (592)
T 4a9v_A 476 NSPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI----RRFMVG-PI-----------GCEVTGISF 538 (592)
T ss_dssp CCEEEEEECTTC-CEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCE----EEEEEC-CT-----------TCEEEEEEE
T ss_pred CCCCceEECCCC-CEEEEeCCCcCccccccccCCceEEEEeCCCCeE----EEEEeC-CC-----------CccccCCEE
Confidence 457889999998 76663321 12566667666664 233332 10 246899999
Q ss_pred cCCCCEEEEe
Q 014005 336 ANDGQHLLSR 345 (432)
Q Consensus 336 s~dg~~l~s~ 345 (432)
+||++.|...
T Consensus 539 SPD~ktLfV~ 548 (592)
T 4a9v_A 539 SPDQKTLFVG 548 (592)
T ss_dssp CTTSSEEEEE
T ss_pred CCCCCEEEEE
Confidence 9999988764
No 354
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=48.45 E-value=88 Score=30.60 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=29.3
Q ss_pred ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeec
Q 014005 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM 155 (432)
Q Consensus 115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 155 (432)
.|.++.+ +..++++-+.|+++|+|++.++++.....+
T Consensus 223 ~Is~~~~----~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF----HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE----TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc----CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555555 466999999999999999999987666555
No 355
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=47.85 E-value=86 Score=32.85 Aligned_cols=40 Identities=20% Similarity=0.378 Sum_probs=31.8
Q ss_pred CeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCC
Q 014005 220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (432)
Q Consensus 220 ~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~ 260 (432)
.+.+++..++..++.+- .|+++++|++. +++++.+.++..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~-t~~~v~t~DL~~ 279 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLS-TNQCVETIELSQ 279 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETT-TTEEEEEEECCC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECC-CCCeEEeechhh
Confidence 45566667777888777 99999999999 788888877643
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=44.19 E-value=1.9e+02 Score=26.51 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCC-EEEEecccceEEEEEec
Q 014005 34 IVSAIEFDKTGD-YLAVGDRGGRVILFETV 62 (432)
Q Consensus 34 ~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~ 62 (432)
.-+.|+|.|+|. .|+++...|.|++++.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 457899999996 44445678999998644
No 357
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=41.80 E-value=2.6e+02 Score=27.27 Aligned_cols=161 Identities=11% Similarity=0.036 Sum_probs=79.0
Q ss_pred CCCCEEEEEeCC----CeEEEEEccCcceeeee-ecC---CCCccccccccccccccccccCCCCCcceecceeec----
Q 014005 125 PNGSMFILSTND----KTIKLWKVRDQKVKKIK-EMD---HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE---- 192 (432)
Q Consensus 125 ~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---- 192 (432)
.++..++.|+.+ +.+.+||..++++..+. ... ... ....-..+....++...+.|+...
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~---------~R~~hs~~~~~~~~~lyv~GG~~~~~~~ 466 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPV---------ARMCHTFTTISRNNQLLLIGGRKAPHQG 466 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCC---------CCBSCEEEEETTTTEEEEECCBSSTTCB
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCc---------cccceEEEEEccCCEEEEEcCCCCCCCc
Confidence 356677777643 46888999888766654 211 000 000111111211455555555422
Q ss_pred cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCC--eEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (432)
Q Consensus 193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (432)
-+.+.+||.... ....+..+ .... .-.+++...++..++.| .++ .+.+||.. +.. ...+... ..+......
T Consensus 467 ~~dv~~yd~~t~-~W~~~~~~-p~~R-~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~-t~~-W~~~~~~-g~~p~~r~~ 540 (695)
T 2zwa_A 467 LSDNWIFDMKTR-EWSMIKSL-SHTR-FRHSACSLPDGNVLILGGVTEGPAMLLYNVT-EEI-FKDVTPK-DEFFQNSLV 540 (695)
T ss_dssp CCCCEEEETTTT-EEEECCCC-SBCC-BSCEEEECTTSCEEEECCBCSSCSEEEEETT-TTE-EEECCCS-SGGGGSCCB
T ss_pred cccEEEEeCCCC-cEEECCCC-CCCc-ccceEEEEcCCEEEEECCCCCCCCEEEEECC-CCc-eEEccCC-CCCCCcccc
Confidence 235777887642 22222222 1111 11233333477787777 433 68899988 332 2222110 001111112
Q ss_pred eEEEEEcCC-CCcEEEEEeC--C-----CeEEEEEccccc
Q 014005 270 ITSAEFHPI-YCNLLAYSSS--R-----GFVRLVDMRQSA 301 (432)
Q Consensus 270 v~~~~~~p~-~~~~l~~~~~--d-----g~i~iwd~~~~~ 301 (432)
-..+.+..+ + ++++.|+. + +.+.+||+.+..
T Consensus 541 ~~a~v~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 541 SAGLEFDPVSK-QGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp SCEEEEETTTT-EEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred eeEEEEeCCCC-EEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 233555655 5 77888875 2 468899988765
No 358
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=39.98 E-value=15 Score=38.42 Aligned_cols=35 Identities=9% Similarity=0.077 Sum_probs=28.7
Q ss_pred CcEEEEEEcCCCCEEEEecccceEEEEEecCCcCC
Q 014005 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNT 67 (432)
Q Consensus 33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~ 67 (432)
..+.+++..++..++++-+.|+++|||++.+++.+
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeE
Confidence 35556667788899999999999999999987643
No 359
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=38.31 E-value=35 Score=33.31 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=29.0
Q ss_pred cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCC
Q 014005 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNT 67 (432)
Q Consensus 30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~ 67 (432)
.....|.|+.+. ..+|++-+.|+++|+|++.+++.+
T Consensus 219 ~~~~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv 254 (729)
T 3f7f_A 219 DYDSVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLI 254 (729)
T ss_dssp CCCCEEEEEEET--TTEEEEEETTCEEEEEETTTTEEE
T ss_pred CcCceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceE
Confidence 334578887764 679999999999999999998743
No 360
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=35.46 E-value=2.2e+02 Score=27.00 Aligned_cols=59 Identities=8% Similarity=0.062 Sum_probs=36.6
Q ss_pred CCeeEEEeCCCCCEEEEEcC-------------CeEEEEeCCCCCceeeEeecCCCCcCC-CCcceEEEEEcCCCCcEEE
Q 014005 219 FNINSISNNSDCETFVSADD-------------LRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLA 284 (432)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~~d-------------~~i~lwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~ 284 (432)
.....|.|.++|.+.+..+. +.+..++.. .++....+ .. ....++.++|+||+ +.|.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~-tGel~~fl-------~~P~~aEpnGiafSPD~-ktLf 546 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPA-TGEIRRFM-------VGPIGCEVTGISFSPDQ-KTLF 546 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTT-TCCEEEEE-------ECCTTCEEEEEEECTTS-SEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCC-CCeEEEEE-------eCCCCccccCCEECCCC-CEEE
Confidence 45667999999987664321 145555554 34433332 22 23568999999999 6665
Q ss_pred EE
Q 014005 285 YS 286 (432)
Q Consensus 285 ~~ 286 (432)
++
T Consensus 547 V~ 548 (592)
T 4a9v_A 547 VG 548 (592)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 361
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=32.56 E-value=1.9e+02 Score=27.66 Aligned_cols=59 Identities=8% Similarity=0.075 Sum_probs=35.2
Q ss_pred CeeEEEeCCCCCEEEEEcC-------------CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEE
Q 014005 220 NINSISNNSDCETFVSADD-------------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 286 (432)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~d-------------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 286 (432)
..-.|+|+|.|++++.-+. ..+.+.+.. .++..+.+. ......++.++|+||+ +.|+..
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~-~g~~~rf~~------~P~gaE~TG~~fspDg-~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPA-TGEIRRFMV------GPIGCEVTGISFSPDQ-KTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTT-TCCEEEEEE------CCTTCEEEEEEECTTS-SEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCC-CCeEEEEEe------CCCCccCcCeeECCCC-CEEEEE
Confidence 3456899999985555422 123444444 344444331 2235679999999998 655543
No 362
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=27.50 E-value=2e+02 Score=27.34 Aligned_cols=76 Identities=4% Similarity=-0.059 Sum_probs=46.1
Q ss_pred ceEEEEEcCCCCcEEEEEe-CCCeEEEEEcccccccc-----ccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005 269 VITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCD-----HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (432)
Q Consensus 269 ~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~-----~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 342 (432)
....+..+||| ++++.++ .+.++.++|+++-.... .....+...+ +..-.....+|.++|.-.
T Consensus 324 sPHGv~vsPDG-kyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~----------e~GlGPlHt~Fd~~G~aY 392 (638)
T 3sbq_A 324 NPHGCNTSSDG-KYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP----------ELGLGPLHTTFDGRGNAY 392 (638)
T ss_dssp SCCCEEECTTS-CEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC----------BCCSCEEEEEECSSSEEE
T ss_pred CCcceeeCCCC-CEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec----------cCCCcccEEEECCCCceE
Confidence 45578899999 6655554 78899999998532100 0001111100 012355678999999433
Q ss_pred EEe-eCCeEEEEec
Q 014005 343 LSR-DYMNLKVFRY 355 (432)
Q Consensus 343 ~s~-~~~~i~iwd~ 355 (432)
.|- -|..|--|++
T Consensus 393 TtlfidSqvvkWni 406 (638)
T 3sbq_A 393 TTLFIDSQVVKWNM 406 (638)
T ss_dssp EEETTTTEEEEEEH
T ss_pred eeeeecceEEEEec
Confidence 344 4589999999
Done!