BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014006
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/404 (47%), Positives = 275/404 (68%), Gaps = 11/404 (2%)
Query: 26 IGETGSGKSTQLSQ--ILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGY 83
+GETGSGK+TQ+ Q + + ++ + TQP +E+ V+LGEEVGY
Sbjct: 115 VGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGY 174
Query: 84 AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143
+IRFE++TS +T++KY+TDG+LLRE + + DLS YS IILDEAHER+L TDIL+GL+K++
Sbjct: 175 SIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQV 234
Query: 144 VNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKT 203
V R LKI+I SATLD EK ++F++ P L VPG+ YPVE+ ++ E YL+SA++T
Sbjct: 235 VKRRPD-LKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRT 293
Query: 204 AIDIHVREPEGDVLIFMTGQDDIEKLVSKLE-DKIRSLDEGSCMDAVILPLHGSLPPEMQ 262
+ IH E GD+L+F+TG+D+IE V K+ + + + E C + PL+GSLPP Q
Sbjct: 294 VLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQ 353
Query: 263 VRVFSPPPPNC-----RRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDV 317
R+F P P + R+ ++STNIAETSLT+DG+VYV+D G+ KQ+ YNP + SL V
Sbjct: 354 QRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLV 413
Query: 318 VQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLD 377
ISK A QR GRAGRTRPGKC+RLY + E ++ + PEI RS+L+ +VL LK L
Sbjct: 414 SPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLG 473
Query: 378 LSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSIGR 421
+ D+ + FDF+DPP+ E++ AL++L + +D+ G++T +GR
Sbjct: 474 IDDL--VHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGR 515
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/404 (47%), Positives = 275/404 (68%), Gaps = 11/404 (2%)
Query: 26 IGETGSGKSTQLSQ--ILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGY 83
+GETGSGK+TQ+ Q + + ++ + TQP +E+ V+LGEEVGY
Sbjct: 115 VGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGY 174
Query: 84 AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143
+IRFE++TS +T++KY+TDG+LLRE + + DLS YS IILDEAHER+L TDIL+GL+K++
Sbjct: 175 SIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQV 234
Query: 144 VNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKT 203
V R LKI+I SATLD EK ++F++ P L VPG+ YPVE+ ++ E YL+SA++T
Sbjct: 235 VKRRPD-LKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRT 293
Query: 204 AIDIHVREPEGDVLIFMTGQDDIEKLVSKLE-DKIRSLDEGSCMDAVILPLHGSLPPEMQ 262
+ IH E GD+L+F+TG+D+IE V K+ + + + E C + PL+GSLPP Q
Sbjct: 294 VLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQ 353
Query: 263 VRVFSPPPPNC-----RRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDV 317
R+F P P + R+ ++STNIAETSLT+DG+VYV+D G+ KQ+ YNP + SL V
Sbjct: 354 QRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLV 413
Query: 318 VQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLD 377
ISK A QR GRAGRTRPGKC+RLY + E ++ + PEI RS+L+ +VL LK L
Sbjct: 414 SPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLG 473
Query: 378 LSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSIGR 421
+ D+ + FDF+DPP+ E++ AL++L + +D+ G++T +GR
Sbjct: 474 IDDL--VHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGR 515
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 8/179 (4%)
Query: 4 LPILQYEETIXXXXXXXXXXXXIGETGSGKSTQLSQILH----RHGYTKSGIIGVTQPXX 59
LP+ ++E I G TG GK+TQ+ Q + ++ I VTQP
Sbjct: 60 LPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRR 119
Query: 60 XXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSE-RTLIKYLTDGVLLREILSNPDLSPY 118
E G G+ GY++RFE I + T GVLLR++ + +
Sbjct: 120 ISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIXFCTVGVLLRKLEAG--IRGI 177
Query: 119 SVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNV 177
S +I+DE HER +NTD LL +++ +V +++I++ SAT+D ++F NCP + V
Sbjct: 178 SHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLXSATIDTSXFCEYFFNCPIIEV 235
>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain
Length = 270
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 395 ESLEDALKQLYLIDAIDENGSITSIGRTMA 424
E+L A++QLY + A+D+ G +T +GR MA
Sbjct: 18 ETLITAMEQLYTLGALDDEGLLTRLGRRMA 47
>pdb|2F55|A Chain A, Two Hepatitis C Virus Ns3 Helicase Domains Complexed With
The Same Strand Of Dna
pdb|2F55|B Chain B, Two Hepatitis C Virus Ns3 Helicase Domains Complexed With
The Same Strand Of Dna
pdb|2F55|C Chain C, Two Hepatitis C Virus Ns3 Helicase Domains Complexed With
The Same Strand Of Dna
Length = 435
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 78/222 (35%), Gaps = 45/222 (20%)
Query: 29 TGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFE 88
TGSGKST++ GY + V P LG + I
Sbjct: 17 TGSGKSTKVPAAYAAQGYK----VLVLNPSVA----------ATLGFGAYMSKAHGIDPN 62
Query: 89 DRTSERTL-----IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143
RT RT+ I Y T G L + Y +II DE H T + +G V
Sbjct: 63 IRTGVRTITTGGSITYSTYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQ 120
Query: 144 VNLRASKLKILIT-----SATLDGEKVSKF-FSNCPTLNVPGKLYPVEIL---------H 188
++L +L T S T+ + + SN + GK P+E + H
Sbjct: 121 AETAGARLVVLATATPPGSVTVPHPNIEEIGLSNNGEIPFYGKAIPIEAIKGGRHLIFCH 180
Query: 189 SKERPTSYLES---------ALKTAIDIHVREPEGDVLIFMT 221
SK++ A +D+ V P GDV++ T
Sbjct: 181 SKKKCDELAAKLTGLGLNAVAYYRGLDVSVIPPIGDVVVVAT 222
>pdb|8OHM|A Chain A, Crystal Structure Of Rna Helicase From Genotype 1b
Hepatitis C Virus: Mechanism Of Unwinding Duplex Rna
Length = 435
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 78/219 (35%), Gaps = 39/219 (17%)
Query: 29 TGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGY-AIRF 87
TGSGKST++ GY + V P + G+ G AI
Sbjct: 17 TGSGKSTKVPAAYAAQGYK----VLVLNPSVAATLGFGVYMSKAHGIDPNIRTGVRAITT 72
Query: 88 EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147
+ T K+L DG Y +II DE H + + +G V
Sbjct: 73 GGPITYSTYGKFLADG--------GCSGGAYDIIICDECHSTDSTSILGIGTVLDQAETA 124
Query: 148 ASKLKILIT-----SATLDGEKVSKF-FSNCPTLNVPGKLYPVEIL---------HSKER 192
++L +L T S T+ + + SN + GK P+E++ HSK++
Sbjct: 125 GARLVVLATATPPGSVTVPHPNIEEVALSNTGEIPFYGKAIPIEVIRGGRHLIFCHSKKK 184
Query: 193 PTSYLESALKT----------AIDIHVREPEGDVLIFMT 221
L + L +D+ V GDV++ T
Sbjct: 185 -CDELAAKLSALGLNAVAYYRGLDVSVIPTSGDVVVVAT 222
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 156 TSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPE 213
T+ T E ++KFF+N + VP + V +KE PT LE K+A + + EPE
Sbjct: 220 TTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDNKEMPT--LE--FKSANNTYTLEPE 273
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 156 TSATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPE 213
T+ T E ++KFF+N + VP + V +KE PT LE K+A + + EPE
Sbjct: 266 TTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDNKEMPT--LE--FKSANNTYTLEPE 319
>pdb|2FOK|A Chain A, Structure Of Restriction Endonuclease Foki
pdb|2FOK|B Chain B, Structure Of Restriction Endonuclease Foki
Length = 579
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 290 DGVVYV----IDCGY-VKQRQYNPSSGMYSLDVVQISKVQ--ANQRVGRAGRTRPGKCYR 342
DG +Y ID G V + Y SG Y+L + Q ++Q + R P + ++
Sbjct: 450 DGAIYTVGSPIDYGVIVDTKAY---SGGYNLPIGQADEMQRYVEENQTRNKHINPNEWWK 506
Query: 343 LYPSTVYHDEFLDVT 357
+YPS+V +FL V+
Sbjct: 507 VYPSSVTEFKFLFVS 521
>pdb|1FOK|A Chain A, Structure Of Restriction Endonuclease Foki Bound To Dna
Length = 576
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 290 DGVVYV----IDCGY-VKQRQYNPSSGMYSLDVVQISKVQ--ANQRVGRAGRTRPGKCYR 342
DG +Y ID G V + Y SG Y+L + Q ++Q + R P + ++
Sbjct: 447 DGAIYTVGSPIDYGVIVDTKAY---SGGYNLPIGQADEMQRYVEENQTRNKHINPNEWWK 503
Query: 343 LYPSTVYHDEFLDVT 357
+YPS+V +FL V+
Sbjct: 504 VYPSSVTEFKFLFVS 518
>pdb|3KQL|A Chain A, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQL|B Chain B, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQN|A Chain A, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|A Chain A, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|B Chain B, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|C Chain C, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|D Chain D, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|E Chain E, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQU|F Chain F, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
Length = 437
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 48/134 (35%), Gaps = 21/134 (15%)
Query: 29 TGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFE 88
TGSGKST++ GY + V P LG + I
Sbjct: 18 TGSGKSTKVPAAYAAQGYK----VLVLNPSVAAT----------LGFGAYMSKAHGIDPN 63
Query: 89 DRTSERTL-----IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143
RT RT+ I Y T G L + Y +II DE H T + +G V
Sbjct: 64 IRTGVRTITTGAPITYSTYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQ 121
Query: 144 VNLRASKLKILITS 157
++L +L T+
Sbjct: 122 AETAGARLVVLATA 135
>pdb|3KQH|A Chain A, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQH|B Chain B, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQK|A Chain A, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
pdb|3KQK|B Chain B, Three Conformational Snapshots Of The Hepatitis C Virus
Ns3 Helicase Reveal A Ratchet Translocation Mechanism
Length = 436
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 48/134 (35%), Gaps = 21/134 (15%)
Query: 29 TGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFE 88
TGSGKST++ GY + V P LG + I
Sbjct: 18 TGSGKSTKVPAAYAAQGYK----VLVLNPSVAAT----------LGFGAYMSKAHGIDPN 63
Query: 89 DRTSERTL-----IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143
RT RT+ I Y T G L + Y +II DE H T + +G V
Sbjct: 64 IRTGVRTITTGAPITYSTYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQ 121
Query: 144 VNLRASKLKILITS 157
++L +L T+
Sbjct: 122 AETAGARLVVLATA 135
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Query: 86 RFEDRTSERTL-IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSL-NTDILLGLVKRL 143
RF + T+++ + G +RE L D++ S+ +++ AHE L NT +L +
Sbjct: 187 RFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVG 246
Query: 144 VNLRASKLKILITSATLDGEKVSKFFSNCPTLNVPGKLYPVEILH 188
+ + ++ T A + G K F P KL V LH
Sbjct: 247 TGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLH 291
>pdb|3O8B|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8B|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8C|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8C|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8D|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8D|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8R|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8R|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|4B71|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B71|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B73|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B73|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B74|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B74|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B76|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B76|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 666
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 66/184 (35%), Gaps = 36/184 (19%)
Query: 29 TGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFE 88
TGSGKST++ GY + V P LG + I
Sbjct: 241 TGSGKSTKVPAAYAAQGYK----VLVLNPSVAAT----------LGFGAYMSKAHGIDPN 286
Query: 89 DRTSERTL-----IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143
RT RT+ + Y T G L + Y +II DE H T + +G V
Sbjct: 287 IRTGVRTITTGAPVTYSTYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQ 344
Query: 144 VNLRASKLKILIT-----SATLDGEKVSKF-FSNCPTLNVPGKLYPVEIL---------H 188
++L +L T S T+ + + SN + GK P+E + H
Sbjct: 345 AETAGARLVVLATATPPGSVTVPHPNIEEVALSNTGEIPFYGKAIPIEAIRGGRHLIFCH 404
Query: 189 SKER 192
SK++
Sbjct: 405 SKKK 408
>pdb|1CU1|A Chain A, Crystal Structure Of An Enzyme Complex From Hepatitis C
Virus
pdb|1CU1|B Chain B, Crystal Structure Of An Enzyme Complex From Hepatitis C
Virus
Length = 645
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 66/184 (35%), Gaps = 36/184 (19%)
Query: 29 TGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFE 88
TGSGKST++ GY + V P LG + I
Sbjct: 220 TGSGKSTKVPAAYAAQGYK----VLVLNPSVAAT----------LGFGAYMSKAHGIDPN 265
Query: 89 DRTSERTL-----IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143
RT RT+ + Y T G L + Y +II DE H T + +G V
Sbjct: 266 IRTGVRTITTGAPVTYSTYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQ 323
Query: 144 VNLRASKLKILIT-----SATLDGEKVSKF-FSNCPTLNVPGKLYPVEIL---------H 188
++L +L T S T+ + + SN + GK P+E + H
Sbjct: 324 AETAGARLVVLATATPPGSVTVPHPNIEEVALSNTGEIPFYGKAIPIEAIRGGRHLIFCH 383
Query: 189 SKER 192
SK++
Sbjct: 384 SKKK 387
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase
At 2.1 Angstroms Resolution
Length = 195
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 26 IGETGSGKSTQLSQILHRHGYT 47
+G GSGK TQ +I+ ++GYT
Sbjct: 15 VGGPGSGKGTQCEKIVQKYGYT 36
>pdb|4B75|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B75|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 666
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 66/184 (35%), Gaps = 36/184 (19%)
Query: 29 TGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFE 88
TGSGKST++ GY + V P LG + I
Sbjct: 241 TGSGKSTKVPAAYAAQGYK----VLVLNPSVAAT----------LGFGAYMSKAHGIDPN 286
Query: 89 DRTSERTL-----IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143
RT RT+ + Y T G L + Y +II DE H T + +G V
Sbjct: 287 IRTGVRTITTGAPVTYSTYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQ 344
Query: 144 VNLRASKLKILIT-----SATLDGEKVSKF-FSNCPTLNVPGKLYPVEIL---------H 188
++L +L T S T+ + + SN + GK P+E + H
Sbjct: 345 AETAGARLVVLATATPPGSVTVPHPNIEEVALSNTGEIPFYGKAIPIEAIRGGRHLIFCH 404
Query: 189 SKER 192
SK++
Sbjct: 405 SKKK 408
>pdb|4A92|A Chain A, Full-Length Hcv Ns3-4a Protease-Helicase In Complex With A
Macrocyclic Protease Inhibitor.
pdb|4A92|B Chain B, Full-Length Hcv Ns3-4a Protease-Helicase In Complex With A
Macrocyclic Protease Inhibitor
Length = 666
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 66/184 (35%), Gaps = 36/184 (19%)
Query: 29 TGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFE 88
TGSGKST++ GY + V P LG + I
Sbjct: 241 TGSGKSTKVPAAYAAQGYK----VLVLNPSVAA----------TLGFGAYMSKAHGIDPN 286
Query: 89 DRTSERTL-----IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143
RT RT+ + Y T G L + Y +II DE H T + +G V
Sbjct: 287 IRTGVRTITTGAPVTYSTYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQ 344
Query: 144 VNLRASKLKILIT-----SATLDGEKVSKF-FSNCPTLNVPGKLYPVEIL---------H 188
++L +L T S T+ + + SN + GK P+E + H
Sbjct: 345 AETAGARLVVLATATPPGSVTVPHPNIEEVALSNTGEIPFYGKAIPIEAIRGGRHLIFCH 404
Query: 189 SKER 192
SK++
Sbjct: 405 SKKK 408
>pdb|4B6E|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6E|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6F|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6F|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 683
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 66/184 (35%), Gaps = 36/184 (19%)
Query: 29 TGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFE 88
TGSGKST++ GY + V P LG + I
Sbjct: 241 TGSGKSTKVPAAYAAQGYK----VLVLNPSVA----------ATLGFGAYMSKAHGIDPN 286
Query: 89 DRTSERTL-----IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143
RT RT+ + Y T G L + Y +II DE H T + +G V
Sbjct: 287 IRTGVRTITTGAPVTYSTYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQ 344
Query: 144 VNLRASKLKILIT-----SATLDGEKVSKF-FSNCPTLNVPGKLYPVEIL---------H 188
++L +L T S T+ + + SN + GK P+E + H
Sbjct: 345 AETAGARLVVLATATPPGSVTVPHPNIEEVALSNTGEIPFYGKAIPIEAIRGGRHLIFCH 404
Query: 189 SKER 192
SK++
Sbjct: 405 SKKK 408
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 26 IGETGSGKSTQLSQILHRHGYT 47
+G GSGK TQ +I+ ++GYT
Sbjct: 15 VGGPGSGKGTQCEKIVQKYGYT 36
>pdb|2ZJO|A Chain A, Crystal Structure Of Hepatitis C Virus Ns3 Helicase With A
Novel Inhibitor
Length = 482
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 66/184 (35%), Gaps = 36/184 (19%)
Query: 29 TGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFE 88
TGSGKST++ GY + V P LG + +
Sbjct: 51 TGSGKSTKVPAAYAAQGYK----VLVLNPSVAAT----------LGFGAYMSKAHGVDPN 96
Query: 89 DRTSERTL-----IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143
RT RT+ I Y T G L + Y +I+ DE H T + +G V
Sbjct: 97 IRTGVRTITTGAPITYSTYGKFLAD--GGCSGGAYDIIMCDECHSTDSTTILGIGTVLDQ 154
Query: 144 VNLRASKLKILIT-----SATLDGEKVSKF-FSNCPTLNVPGKLYPVEIL---------H 188
++L +L T S T+ + + SN + GK P+E + H
Sbjct: 155 AETAGARLVVLATATPPGSVTVPHPNIEEIALSNTGEIPFYGKAIPIETIKGGRHLIFCH 214
Query: 189 SKER 192
SK++
Sbjct: 215 SKKK 218
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 26 IGETGSGKSTQLSQILHRHGYT 47
+G G+GK TQ ++I+ ++GYT
Sbjct: 9 LGGPGAGKGTQCARIVEKYGYT 30
>pdb|1A1V|A Chain A, Hepatitis C Virus Ns3 Helicase Domain Complexed With
Single Stranded Sdna
Length = 476
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 48/134 (35%), Gaps = 21/134 (15%)
Query: 29 TGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFE 88
TGSGKST++ GY + V P LG + +
Sbjct: 41 TGSGKSTKVPAAYAAQGYK----VLVLNPSVAAT----------LGFGAYMSKAHGVDPN 86
Query: 89 DRTSERTL-----IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143
RT RT+ I Y T G L + Y +II DE H + + +G V
Sbjct: 87 IRTGVRTITTGSPITYSTYGKFLAD--GGXSGGAYDIIICDECHSTDATSILGIGTVLDQ 144
Query: 144 VNLRASKLKILITS 157
++L +L T+
Sbjct: 145 AETAGARLVVLATA 158
>pdb|1HEI|A Chain A, Structure Of The Hepatitis C Virus Rna Helicase Domain
pdb|1HEI|B Chain B, Structure Of The Hepatitis C Virus Rna Helicase Domain
Length = 451
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 48/134 (35%), Gaps = 21/134 (15%)
Query: 29 TGSGKSTQLSQILHRHGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFE 88
TGSGKST++ GY + V P LG + +
Sbjct: 27 TGSGKSTKVPAAYAAQGYK----VLVLNPSVAAT----------LGFGAYMSKAHGVDPN 72
Query: 89 DRTSERTL-----IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143
RT RT+ I Y T G L + Y +II DE H + + +G V
Sbjct: 73 IRTGVRTITTGSPITYSTYGKFLAD--GGCSGGAYDIIICDECHSTDATSILGIGTVLDQ 130
Query: 144 VNLRASKLKILITS 157
++L +L T+
Sbjct: 131 AETAGARLVVLATA 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,599,168
Number of Sequences: 62578
Number of extensions: 456750
Number of successful extensions: 1382
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1343
Number of HSP's gapped (non-prelim): 30
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)