Query 014006
Match_columns 432
No_of_seqs 269 out of 3036
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 00:56:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 1.2E-87 2.6E-92 636.8 43.0 423 3-431 49-472 (674)
2 KOG0923 mRNA splicing factor A 100.0 4.6E-88 9.9E-93 633.2 35.5 426 2-431 262-688 (902)
3 KOG0924 mRNA splicing factor A 100.0 2.5E-82 5.5E-87 595.7 35.1 425 3-430 354-778 (1042)
4 COG1643 HrpA HrpA-like helicas 100.0 2.2E-81 4.8E-86 628.6 43.2 420 2-430 47-468 (845)
5 PRK11664 ATP-dependent RNA hel 100.0 2.7E-79 5.8E-84 625.2 44.5 419 1-430 1-419 (812)
6 TIGR01970 DEAH_box_HrpB ATP-de 100.0 8.9E-79 1.9E-83 619.8 42.0 416 4-430 1-416 (819)
7 KOG0925 mRNA splicing factor A 100.0 2.7E-77 5.9E-82 543.2 31.5 420 3-431 45-469 (699)
8 PRK11131 ATP-dependent RNA hel 100.0 2.7E-76 5.8E-81 611.8 42.2 415 2-430 71-496 (1294)
9 TIGR01967 DEAH_box_HrpA ATP-de 100.0 4.8E-76 1E-80 612.2 41.4 414 3-430 65-487 (1283)
10 KOG0926 DEAH-box RNA helicase 100.0 6E-73 1.3E-77 540.5 33.7 425 3-430 254-785 (1172)
11 KOG0920 ATP-dependent RNA heli 100.0 1.5E-70 3.3E-75 547.7 30.5 424 3-430 171-627 (924)
12 PHA02653 RNA helicase NPH-II; 100.0 2.2E-57 4.8E-62 452.7 33.3 383 8-426 167-584 (675)
13 KOG0331 ATP-dependent RNA heli 100.0 2.4E-50 5.3E-55 381.3 22.6 313 8-351 116-452 (519)
14 KOG0330 ATP-dependent RNA heli 100.0 5.3E-50 1.1E-54 356.2 16.9 311 7-351 85-411 (476)
15 PRK02362 ski2-like helicase; P 100.0 2.2E-47 4.8E-52 394.4 30.4 406 6-430 24-503 (737)
16 COG0513 SrmB Superfamily II DN 100.0 4.6E-48 9.9E-53 381.1 22.5 309 6-347 52-380 (513)
17 PRK01172 ski2-like helicase; P 100.0 1.2E-47 2.7E-52 393.8 25.3 410 4-430 21-481 (674)
18 PRK11776 ATP-dependent RNA hel 100.0 2.3E-47 5E-52 376.0 24.1 309 6-349 27-351 (460)
19 PTZ00110 helicase; Provisional 100.0 4.2E-47 9.1E-52 377.8 24.0 313 6-350 153-487 (545)
20 PRK04837 ATP-dependent RNA hel 100.0 9.8E-47 2.1E-51 367.6 22.9 310 7-350 32-365 (423)
21 PRK10590 ATP-dependent RNA hel 100.0 3.1E-46 6.8E-51 366.4 26.3 310 6-350 24-355 (456)
22 PRK11634 ATP-dependent RNA hel 100.0 1.5E-45 3.2E-50 369.9 27.5 309 6-349 29-354 (629)
23 PRK11192 ATP-dependent RNA hel 100.0 6.5E-46 1.4E-50 363.6 24.3 313 6-351 24-356 (434)
24 PLN00206 DEAD-box ATP-dependen 100.0 4.1E-46 8.8E-51 369.8 23.1 311 6-350 144-478 (518)
25 PRK04537 ATP-dependent RNA hel 100.0 5.7E-46 1.2E-50 370.9 24.1 310 6-349 32-366 (572)
26 KOG0328 Predicted ATP-dependen 100.0 3E-46 6.4E-51 318.9 16.8 312 7-351 51-377 (400)
27 TIGR03817 DECH_helic helicase/ 100.0 3.6E-45 7.8E-50 374.0 28.2 320 5-347 36-386 (742)
28 PRK01297 ATP-dependent RNA hel 100.0 1.9E-45 4.1E-50 363.3 23.4 310 6-349 110-444 (475)
29 KOG0342 ATP-dependent RNA heli 100.0 3.4E-45 7.3E-50 335.0 22.6 312 6-351 105-441 (543)
30 KOG0338 ATP-dependent RNA heli 100.0 3.4E-46 7.5E-51 342.0 14.9 310 8-350 206-536 (691)
31 PTZ00424 helicase 45; Provisio 100.0 3.7E-45 8.1E-50 355.7 23.1 313 6-351 51-378 (401)
32 KOG0333 U5 snRNP-like RNA heli 100.0 1.3E-45 2.8E-50 339.5 18.3 308 8-349 270-626 (673)
33 KOG0345 ATP-dependent RNA heli 100.0 2E-45 4.4E-50 334.3 19.0 327 6-364 29-383 (567)
34 PRK00254 ski2-like helicase; P 100.0 1.5E-44 3.4E-49 372.4 27.9 406 6-430 24-494 (720)
35 KOG0343 RNA Helicase [RNA proc 100.0 7.4E-45 1.6E-49 336.2 17.6 314 6-351 92-426 (758)
36 KOG0340 ATP-dependent RNA heli 100.0 1.5E-44 3.2E-49 317.8 17.0 313 8-351 32-365 (442)
37 KOG0326 ATP-dependent RNA heli 100.0 6.8E-45 1.5E-49 315.6 13.2 311 7-351 109-433 (459)
38 PLN03137 ATP-dependent DNA hel 100.0 3.2E-43 6.9E-48 357.9 24.2 306 6-350 461-790 (1195)
39 TIGR00614 recQ_fam ATP-depende 100.0 2.3E-42 5E-47 340.0 27.5 304 6-350 12-336 (470)
40 COG1202 Superfamily II helicas 100.0 3.7E-43 8E-48 326.6 17.7 383 13-429 225-654 (830)
41 PRK11057 ATP-dependent DNA hel 100.0 1.2E-41 2.7E-46 343.3 25.1 303 6-349 26-345 (607)
42 KOG0332 ATP-dependent RNA heli 100.0 6.6E-42 1.4E-46 303.0 17.3 317 8-351 115-447 (477)
43 COG1204 Superfamily II helicas 100.0 3.5E-41 7.5E-46 341.0 23.9 408 8-431 35-516 (766)
44 PRK13767 ATP-dependent helicas 100.0 4.6E-41 9.9E-46 350.5 25.1 313 6-343 33-396 (876)
45 KOG0335 ATP-dependent RNA heli 100.0 5.2E-42 1.1E-46 319.2 15.6 308 8-345 99-442 (482)
46 KOG0348 ATP-dependent RNA heli 100.0 2.3E-41 5E-46 312.1 19.5 343 6-369 160-577 (708)
47 TIGR01389 recQ ATP-dependent D 100.0 9E-41 2E-45 338.1 24.7 301 6-349 14-333 (591)
48 KOG0336 ATP-dependent RNA heli 100.0 7.3E-42 1.6E-46 305.9 14.3 311 8-351 245-576 (629)
49 COG1201 Lhr Lhr-like helicases 100.0 6E-40 1.3E-44 327.7 26.6 368 7-406 24-438 (814)
50 COG0514 RecQ Superfamily II DN 100.0 1.9E-40 4.1E-45 320.0 21.8 301 8-350 20-340 (590)
51 KOG0346 RNA helicase [RNA proc 100.0 1E-40 2.2E-45 301.1 16.3 309 8-350 44-413 (569)
52 KOG0339 ATP-dependent RNA heli 100.0 1.9E-40 4.2E-45 304.1 16.7 310 7-351 247-579 (731)
53 PRK09751 putative ATP-dependen 100.0 1.4E-39 3E-44 344.5 22.7 296 25-341 1-379 (1490)
54 KOG0341 DEAD-box protein abstr 100.0 1.1E-40 2.3E-45 296.5 8.5 306 10-351 197-532 (610)
55 KOG0921 Dosage compensation co 100.0 1.1E-39 2.3E-44 316.0 15.8 423 3-432 376-858 (1282)
56 KOG0350 DEAD-box ATP-dependent 100.0 2.1E-39 4.6E-44 297.0 15.7 316 6-351 160-544 (620)
57 KOG4284 DEAD box protein [Tran 100.0 1.4E-38 3.1E-43 299.3 15.8 313 8-349 50-381 (980)
58 TIGR00580 mfd transcription-re 100.0 1.2E-37 2.6E-42 321.6 24.2 298 6-347 452-770 (926)
59 KOG0347 RNA helicase [RNA proc 100.0 3.3E-39 7.2E-44 298.7 9.5 310 8-351 206-574 (731)
60 PRK10917 ATP-dependent DNA hel 100.0 5.1E-37 1.1E-41 313.0 25.0 299 4-345 260-587 (681)
61 KOG0344 ATP-dependent RNA heli 100.0 3.9E-38 8.6E-43 295.2 14.7 334 9-375 162-523 (593)
62 PRK10689 transcription-repair 100.0 3.4E-37 7.4E-42 324.8 22.7 298 5-346 600-918 (1147)
63 TIGR01587 cas3_core CRISPR-ass 100.0 2.5E-36 5.4E-41 289.0 24.0 291 22-348 1-337 (358)
64 COG1111 MPH1 ERCC4-like helica 100.0 2.3E-36 5E-41 279.2 22.6 324 4-350 14-484 (542)
65 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.8E-36 6E-41 303.1 24.4 301 6-344 16-388 (844)
66 TIGR00643 recG ATP-dependent D 100.0 2.6E-36 5.6E-41 306.0 24.0 299 4-344 234-563 (630)
67 KOG0354 DEAD-box like helicase 100.0 4.2E-35 9.2E-40 286.1 22.7 323 3-347 60-529 (746)
68 KOG0327 Translation initiation 100.0 6.4E-36 1.4E-40 267.1 14.3 308 8-351 51-374 (397)
69 TIGR03158 cas3_cyano CRISPR-as 100.0 3.9E-34 8.4E-39 271.1 26.4 284 9-333 1-357 (357)
70 KOG0334 RNA helicase [RNA proc 100.0 6.2E-36 1.4E-40 297.6 13.5 312 5-349 387-722 (997)
71 KOG0952 DNA/RNA helicase MER3/ 100.0 1.5E-34 3.2E-39 285.7 19.9 332 7-349 112-493 (1230)
72 COG1205 Distinct helicase fami 100.0 4.7E-34 1E-38 293.2 21.7 325 5-349 70-424 (851)
73 PHA02558 uvsW UvsW helicase; P 100.0 1.1E-33 2.5E-38 279.8 22.3 296 4-339 113-443 (501)
74 KOG0351 ATP-dependent DNA heli 100.0 5.7E-34 1.2E-38 290.5 17.4 304 7-351 266-596 (941)
75 KOG0337 ATP-dependent RNA heli 100.0 3E-34 6.4E-39 258.2 11.7 310 8-351 46-372 (529)
76 PRK09401 reverse gyrase; Revie 100.0 3.9E-33 8.4E-38 294.8 20.3 292 5-333 80-429 (1176)
77 KOG0352 ATP-dependent DNA heli 100.0 4.6E-33 1E-37 250.9 16.1 305 8-351 23-366 (641)
78 PRK13766 Hef nuclease; Provisi 100.0 3.5E-32 7.7E-37 284.7 25.4 317 3-350 13-482 (773)
79 KOG0947 Cytoplasmic exosomal R 100.0 4.4E-33 9.6E-38 272.4 16.0 326 3-347 295-723 (1248)
80 COG4581 Superfamily II RNA hel 100.0 2.8E-32 6.1E-37 276.5 20.1 327 3-347 117-537 (1041)
81 KOG0948 Nuclear exosomal RNA h 100.0 1.8E-33 3.8E-38 268.9 10.5 327 3-348 127-540 (1041)
82 KOG0951 RNA helicase BRR2, DEA 100.0 4.2E-31 9.1E-36 264.5 20.4 320 8-336 312-688 (1674)
83 PRK14701 reverse gyrase; Provi 100.0 6.4E-32 1.4E-36 291.3 15.8 310 5-344 79-453 (1638)
84 TIGR01054 rgy reverse gyrase. 100.0 1.2E-30 2.5E-35 276.5 20.4 277 4-305 77-412 (1171)
85 PRK09694 helicase Cas3; Provis 100.0 1.4E-29 3E-34 259.4 25.2 297 6-335 287-662 (878)
86 TIGR03714 secA2 accessory Sec 100.0 3.1E-29 6.6E-34 250.0 26.2 108 211-349 422-539 (762)
87 PRK09200 preprotein translocas 100.0 1.3E-29 2.8E-34 255.1 22.7 109 211-349 426-543 (790)
88 PRK12898 secA preprotein trans 100.0 2.3E-29 4.9E-34 248.1 23.4 306 6-348 104-587 (656)
89 TIGR00603 rad25 DNA repair hel 100.0 5.2E-29 1.1E-33 248.4 24.4 305 3-351 253-611 (732)
90 PRK05580 primosome assembly pr 100.0 5E-29 1.1E-33 253.4 22.5 312 4-344 143-546 (679)
91 KOG0353 ATP-dependent DNA heli 100.0 2.6E-28 5.6E-33 217.4 20.5 304 7-349 96-469 (695)
92 COG4098 comFA Superfamily II D 100.0 1.3E-27 2.9E-32 210.4 24.4 292 11-343 107-412 (441)
93 TIGR00963 secA preprotein tran 100.0 2.8E-28 6E-33 241.7 21.5 109 211-349 403-519 (745)
94 TIGR00595 priA primosomal prot 100.0 2.3E-28 5.1E-33 240.0 18.7 292 24-343 1-377 (505)
95 COG1200 RecG RecG-like helicas 100.0 1.8E-27 3.8E-32 229.7 17.9 304 4-348 261-592 (677)
96 COG1061 SSL2 DNA or RNA helica 100.0 1.1E-26 2.3E-31 225.7 23.4 287 3-335 34-376 (442)
97 KOG0329 ATP-dependent RNA heli 100.0 7.4E-28 1.6E-32 203.5 12.3 277 7-351 66-359 (387)
98 KOG0950 DNA polymerase theta/e 100.0 5.8E-27 1.2E-31 231.2 19.9 326 5-349 223-613 (1008)
99 PRK11448 hsdR type I restricti 99.9 2.4E-25 5.1E-30 234.7 26.5 307 4-337 412-802 (1123)
100 COG1197 Mfd Transcription-repa 99.9 2.8E-25 6.1E-30 226.0 23.7 296 10-349 599-915 (1139)
101 PRK04914 ATP-dependent helicas 99.9 3.8E-24 8.2E-29 220.9 22.9 312 4-347 151-605 (956)
102 COG1203 CRISPR-associated heli 99.9 1.9E-24 4.2E-29 222.1 20.4 308 6-346 196-549 (733)
103 KOG0349 Putative DEAD-box RNA 99.9 4.2E-24 9E-29 193.6 11.0 271 48-344 285-612 (725)
104 PRK13104 secA preprotein trans 99.9 6.1E-23 1.3E-27 206.7 20.4 120 211-345 442-585 (896)
105 PRK12906 secA preprotein trans 99.9 2.6E-22 5.6E-27 201.2 21.3 108 211-348 438-554 (796)
106 KOG0949 Predicted helicase, DE 99.9 1.7E-22 3.6E-27 199.1 19.4 160 6-170 512-682 (1330)
107 PRK12904 preprotein translocas 99.9 2.8E-22 6E-27 201.8 20.0 124 211-347 428-573 (830)
108 PRK13107 preprotein translocas 99.8 5.1E-20 1.1E-24 185.2 19.7 78 199-290 437-514 (908)
109 KOG0953 Mitochondrial RNA heli 99.8 1.8E-20 3.9E-25 175.2 14.7 282 19-347 190-477 (700)
110 COG1198 PriA Primosomal protei 99.8 2.9E-19 6.3E-24 178.6 20.2 312 4-343 197-599 (730)
111 PF00270 DEAD: DEAD/DEAH box h 99.8 4.9E-20 1.1E-24 157.2 11.2 156 8-166 2-167 (169)
112 cd00268 DEADc DEAD-box helicas 99.8 1.5E-19 3.3E-24 158.9 13.3 164 6-171 22-198 (203)
113 TIGR00348 hsdR type I site-spe 99.8 1.7E-18 3.7E-23 176.5 20.8 288 21-339 264-639 (667)
114 PRK12899 secA preprotein trans 99.8 4E-18 8.7E-23 171.9 22.4 121 6-128 93-226 (970)
115 KOG4150 Predicted ATP-dependen 99.8 1.1E-19 2.3E-24 170.3 9.5 316 6-344 287-637 (1034)
116 COG4096 HsdR Type I site-speci 99.8 1.8E-17 4E-22 163.0 24.0 294 6-336 166-526 (875)
117 TIGR00631 uvrb excinuclease AB 99.8 7.9E-19 1.7E-23 176.9 13.0 114 211-347 440-553 (655)
118 COG0556 UvrB Helicase subunit 99.8 5.8E-17 1.3E-21 151.6 22.3 167 150-344 386-554 (663)
119 COG1110 Reverse gyrase [DNA re 99.7 9.5E-17 2.1E-21 160.4 20.5 272 4-304 81-419 (1187)
120 PRK05298 excinuclease ABC subu 99.7 1.2E-17 2.5E-22 169.8 13.4 113 211-346 444-556 (652)
121 TIGR01407 dinG_rel DnaQ family 99.7 1.4E-15 3.1E-20 160.0 25.9 137 196-343 658-811 (850)
122 PLN03142 Probable chromatin-re 99.7 9.9E-16 2.2E-20 159.5 22.2 312 5-351 169-603 (1033)
123 KOG0951 RNA helicase BRR2, DEA 99.7 2.5E-15 5.4E-20 152.5 18.8 318 19-359 1158-1508(1674)
124 cd00079 HELICc Helicase superf 99.7 5.8E-16 1.3E-20 125.9 9.5 104 212-343 27-131 (131)
125 TIGR02562 cas3_yersinia CRISPR 99.6 7.3E-14 1.6E-18 142.6 25.2 97 216-337 759-881 (1110)
126 PRK12900 secA preprotein trans 99.6 2.6E-15 5.6E-20 152.3 14.1 165 151-349 534-713 (1025)
127 PF00271 Helicase_C: Helicase 99.6 1.9E-16 4.2E-21 116.1 3.6 72 246-335 6-77 (78)
128 smart00487 DEXDc DEAD-like hel 99.6 1.4E-14 2.9E-19 126.6 14.9 157 4-162 7-172 (201)
129 PRK12326 preprotein translocas 99.6 1E-13 2.2E-18 137.1 22.0 116 199-346 415-546 (764)
130 PRK07246 bifunctional ATP-depe 99.6 4.6E-13 9.9E-18 139.3 26.7 133 195-343 631-780 (820)
131 KOG1123 RNA polymerase II tran 99.6 1.4E-14 3E-19 134.5 11.4 300 5-348 302-654 (776)
132 cd00046 DEXDc DEAD-like helica 99.6 4.2E-14 9.2E-19 116.2 13.4 136 21-160 1-144 (144)
133 PF04851 ResIII: Type III rest 99.5 5.1E-14 1.1E-18 121.6 12.2 147 4-161 2-183 (184)
134 PF07652 Flavi_DEAD: Flaviviru 99.5 6.7E-14 1.5E-18 110.9 11.0 134 18-163 2-139 (148)
135 PRK13103 secA preprotein trans 99.5 2E-13 4.4E-18 138.2 16.2 104 22-128 97-213 (913)
136 PRK12903 secA preprotein trans 99.5 2.3E-12 5E-17 129.4 20.0 114 199-345 414-537 (925)
137 PF02399 Herpes_ori_bp: Origin 99.5 6.8E-12 1.5E-16 125.2 22.2 294 18-347 47-388 (824)
138 smart00490 HELICc helicase sup 99.5 8.1E-14 1.8E-18 103.1 5.0 72 246-335 10-81 (82)
139 CHL00122 secA preprotein trans 99.4 2.5E-12 5.4E-17 129.8 16.9 113 13-128 82-207 (870)
140 PRK08074 bifunctional ATP-depe 99.4 5.2E-11 1.1E-15 126.3 26.0 139 195-343 735-890 (928)
141 PRK14873 primosome assembly pr 99.4 5.7E-12 1.2E-16 127.3 17.1 134 24-167 164-310 (665)
142 TIGR03117 cas_csf4 CRISPR-asso 99.4 6.5E-10 1.4E-14 111.2 29.1 134 196-343 454-613 (636)
143 PRK12902 secA preprotein trans 99.3 8.1E-11 1.8E-15 118.9 19.9 113 13-128 91-216 (939)
144 KOG0385 Chromatin remodeling c 99.3 2.1E-10 4.6E-15 112.2 18.9 313 6-351 168-603 (971)
145 PRK11747 dinG ATP-dependent DN 99.2 7.8E-09 1.7E-13 106.5 27.7 133 195-343 518-671 (697)
146 KOG0921 Dosage compensation co 99.2 4.8E-13 1E-17 132.0 -3.2 406 4-427 405-861 (1282)
147 TIGR00604 rad3 DNA repair heli 99.2 4E-09 8.6E-14 109.5 21.2 137 195-339 505-665 (705)
148 COG4889 Predicted helicase [Ge 99.1 7.7E-11 1.7E-15 116.6 7.8 312 6-340 162-577 (1518)
149 COG1199 DinG Rad3-related DNA 99.1 2.5E-08 5.3E-13 103.3 24.0 136 195-343 462-614 (654)
150 KOG0390 DNA repair protein, SN 99.1 6.7E-08 1.5E-12 97.4 25.4 108 217-351 598-711 (776)
151 KOG0384 Chromodomain-helicase 99.0 5.6E-09 1.2E-13 107.3 14.3 117 210-351 696-815 (1373)
152 KOG0387 Transcription-coupled 99.0 8.2E-08 1.8E-12 94.9 21.2 116 212-351 545-662 (923)
153 KOG1000 Chromatin remodeling p 99.0 6.7E-08 1.5E-12 90.6 18.2 277 7-302 200-573 (689)
154 KOG0952 DNA/RNA helicase MER3/ 98.9 5.7E-10 1.2E-14 112.8 2.1 232 3-235 910-1175(1230)
155 COG0610 Type I site-specific r 98.7 8.1E-07 1.8E-11 94.4 17.7 133 20-160 273-413 (962)
156 KOG0392 SNF2 family DNA-depend 98.6 1.5E-06 3.2E-11 89.9 17.7 117 213-351 1340-1458(1549)
157 PF06862 DUF1253: Protein of u 98.6 1.4E-05 3E-10 76.6 20.7 232 94-351 131-419 (442)
158 PF13401 AAA_22: AAA domain; P 98.5 1.6E-07 3.4E-12 76.1 5.2 118 18-158 2-124 (131)
159 PRK12901 secA preprotein trans 98.5 1.8E-06 3.9E-11 89.1 13.7 161 151-345 564-739 (1112)
160 PF00176 SNF2_N: SNF2 family N 98.5 6.9E-07 1.5E-11 83.3 10.0 135 18-162 23-174 (299)
161 COG1419 FlhF Flagellar GTP-bin 98.5 4.5E-06 9.9E-11 78.1 14.3 129 19-170 202-333 (407)
162 PF00448 SRP54: SRP54-type pro 98.4 4.5E-06 9.7E-11 72.2 12.8 128 21-165 2-130 (196)
163 PF13604 AAA_30: AAA domain; P 98.4 7.8E-07 1.7E-11 77.2 8.0 120 6-157 2-128 (196)
164 COG0653 SecA Preprotein transl 98.4 3.8E-06 8.2E-11 85.4 13.5 111 211-344 427-542 (822)
165 PRK10536 hypothetical protein; 98.4 2.2E-06 4.7E-11 76.0 9.0 57 4-60 58-115 (262)
166 KOG1002 Nucleotide excision re 98.4 1.4E-05 3E-10 75.4 14.7 88 246-351 661-753 (791)
167 PRK14722 flhF flagellar biosyn 98.3 6.2E-06 1.3E-10 77.8 12.4 125 18-165 135-262 (374)
168 PRK12723 flagellar biosynthesi 98.3 1.1E-05 2.3E-10 76.9 14.1 128 20-170 174-307 (388)
169 cd03216 ABC_Carb_Monos_I This 98.3 1E-05 2.3E-10 68.0 11.5 127 17-169 23-149 (163)
170 PRK11889 flhF flagellar biosyn 98.3 1.9E-05 4.2E-10 74.1 14.1 122 21-164 242-366 (436)
171 COG1121 ZnuC ABC-type Mn/Zn tr 98.3 1.6E-06 3.4E-11 76.7 6.6 150 17-170 27-207 (254)
172 PF13245 AAA_19: Part of AAA d 98.3 3.2E-06 7E-11 60.7 6.9 56 14-69 4-62 (76)
173 cd03246 ABCC_Protease_Secretio 98.3 5.5E-06 1.2E-10 70.5 9.1 130 17-160 25-156 (173)
174 cd03229 ABC_Class3 This class 98.3 3E-06 6.6E-11 72.5 7.5 140 17-168 23-167 (178)
175 cd00009 AAA The AAA+ (ATPases 98.2 2.9E-05 6.2E-10 63.7 12.9 47 9-56 6-54 (151)
176 cd03230 ABC_DR_subfamily_A Thi 98.2 3.7E-06 8E-11 71.6 7.5 137 17-169 23-162 (173)
177 COG4555 NatA ABC-type Na+ tran 98.2 3.2E-06 6.9E-11 70.9 6.7 139 17-157 25-189 (245)
178 cd03222 ABC_RNaseL_inhibitor T 98.2 6.6E-06 1.4E-10 69.8 8.6 118 16-169 21-139 (177)
179 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.2 1.5E-05 3.3E-10 65.5 10.4 103 17-158 23-125 (144)
180 PF02562 PhoH: PhoH-like prote 98.2 1.8E-06 3.9E-11 74.4 4.7 57 5-61 4-61 (205)
181 PRK05703 flhF flagellar biosyn 98.2 3.9E-05 8.5E-10 74.5 14.5 127 19-168 220-350 (424)
182 KOG0389 SNF2 family DNA-depend 98.2 2.6E-05 5.7E-10 77.6 13.2 115 212-351 776-892 (941)
183 COG1120 FepC ABC-type cobalami 98.2 1.4E-05 3.1E-10 71.1 10.3 144 17-161 25-200 (258)
184 TIGR01448 recD_rel helicase, p 98.2 1.9E-05 4.1E-10 81.9 12.9 122 4-157 322-450 (720)
185 PF09848 DUF2075: Uncharacteri 98.2 8.9E-06 1.9E-10 77.6 9.4 94 21-132 2-97 (352)
186 cd00267 ABC_ATPase ABC (ATP-bi 98.2 1.1E-05 2.3E-10 67.5 8.8 117 17-159 22-139 (157)
187 COG1131 CcmA ABC-type multidru 98.1 1.3E-05 2.8E-10 74.0 9.8 149 17-169 28-204 (293)
188 cd03214 ABC_Iron-Siderophores_ 98.1 1.2E-05 2.6E-10 68.9 8.9 128 17-159 22-157 (180)
189 TIGR01447 recD exodeoxyribonuc 98.1 2E-05 4.4E-10 79.4 11.6 135 8-157 148-293 (586)
190 cd03228 ABCC_MRP_Like The MRP 98.1 2.3E-05 4.9E-10 66.6 10.2 128 17-159 25-154 (171)
191 PRK12726 flagellar biosynthesi 98.1 4.7E-05 1E-09 71.3 12.4 132 18-169 204-336 (407)
192 cd03247 ABCC_cytochrome_bd The 98.1 3.1E-05 6.6E-10 66.3 10.6 129 17-159 25-156 (178)
193 cd03233 ABC_PDR_domain1 The pl 98.1 6.7E-06 1.4E-10 71.9 6.5 152 17-169 30-187 (202)
194 PRK10875 recD exonuclease V su 98.1 2.7E-05 5.9E-10 78.7 11.6 135 8-157 155-299 (615)
195 TIGR02760 TraI_TIGR conjugativ 98.1 0.0023 4.9E-08 73.5 27.7 246 3-272 427-685 (1960)
196 PRK14974 cell division protein 98.1 7.5E-05 1.6E-09 69.8 13.0 124 21-163 141-267 (336)
197 smart00382 AAA ATPases associa 98.0 4.8E-05 1E-09 61.9 10.4 39 20-59 2-40 (148)
198 cd03213 ABCG_EPDR ABCG transpo 98.0 6.7E-06 1.5E-10 71.4 5.5 138 17-160 32-171 (194)
199 COG1119 ModF ABC-type molybden 98.0 3.8E-05 8.1E-10 66.8 9.4 142 17-159 54-232 (257)
200 cd03215 ABC_Carb_Monos_II This 98.0 1.6E-05 3.4E-10 68.3 7.0 140 17-169 23-171 (182)
201 PF13086 AAA_11: AAA domain; P 98.0 1.5E-05 3.2E-10 71.4 6.9 66 6-71 2-75 (236)
202 KOG1803 DNA helicase [Replicat 98.0 2E-05 4.3E-10 76.5 7.5 62 6-69 186-249 (649)
203 PRK14721 flhF flagellar biosyn 98.0 0.00017 3.7E-09 69.3 13.7 128 18-168 189-319 (420)
204 PRK04296 thymidine kinase; Pro 98.0 4.3E-05 9.4E-10 66.0 8.8 109 20-157 2-113 (190)
205 TIGR00596 rad1 DNA repair prot 98.0 0.00014 3E-09 75.7 13.9 68 93-162 6-74 (814)
206 cd03238 ABC_UvrA The excision 97.9 0.00012 2.7E-09 62.1 11.2 124 17-160 18-149 (176)
207 PRK13541 cytochrome c biogenes 97.9 1.1E-05 2.4E-10 70.1 4.9 142 17-159 23-182 (195)
208 PRK15483 type III restriction- 97.9 5.6E-05 1.2E-09 78.8 10.7 47 21-67 60-107 (986)
209 COG1126 GlnQ ABC-type polar am 97.9 6.1E-05 1.3E-09 64.2 9.0 145 16-161 24-197 (240)
210 cd03223 ABCD_peroxisomal_ALDP 97.9 8.4E-05 1.8E-09 62.7 10.0 117 17-159 24-147 (166)
211 PRK13538 cytochrome c biogenes 97.9 3.9E-05 8.4E-10 67.2 8.1 142 17-159 24-188 (204)
212 TIGR01189 ccmA heme ABC export 97.9 4.9E-05 1.1E-09 66.2 8.8 59 100-159 128-186 (198)
213 TIGR02768 TraA_Ti Ti-type conj 97.9 0.00015 3.4E-09 75.5 13.8 122 4-157 351-474 (744)
214 COG1122 CbiO ABC-type cobalt t 97.9 1.4E-05 3E-10 70.9 5.2 150 17-169 27-206 (235)
215 cd03232 ABC_PDR_domain2 The pl 97.9 1.8E-05 3.9E-10 68.6 5.8 133 17-160 30-168 (192)
216 PF05970 PIF1: PIF1-like helic 97.9 4.9E-05 1.1E-09 72.7 9.2 119 6-145 2-128 (364)
217 PRK13540 cytochrome c biogenes 97.9 5E-05 1.1E-09 66.3 8.3 143 17-160 24-187 (200)
218 TIGR02868 CydC thiol reductant 97.9 2.7E-05 5.8E-10 78.8 7.5 138 17-157 358-526 (529)
219 PRK08181 transposase; Validate 97.9 0.00023 5.1E-09 64.6 12.3 119 15-171 101-219 (269)
220 KOG0058 Peptide exporter, ABC 97.9 4.6E-05 1E-09 76.0 8.1 131 16-147 490-651 (716)
221 PRK12727 flagellar biosynthesi 97.9 0.0002 4.3E-09 70.1 12.3 127 17-167 347-476 (559)
222 cd03231 ABC_CcmA_heme_exporter 97.9 7E-05 1.5E-09 65.4 8.5 141 17-158 23-183 (201)
223 PRK06526 transposase; Provisio 97.9 0.00011 2.5E-09 66.2 10.0 40 15-55 93-132 (254)
224 cd03217 ABC_FeS_Assembly ABC-t 97.9 0.00021 4.6E-09 62.3 11.5 136 17-167 23-169 (200)
225 TIGR00960 3a0501s02 Type II (G 97.8 0.00017 3.7E-09 63.8 10.8 68 99-169 138-205 (216)
226 TIGR02673 FtsE cell division A 97.8 0.00011 2.4E-09 64.8 9.7 68 99-169 137-204 (214)
227 TIGR03740 galliderm_ABC gallid 97.8 6.9E-05 1.5E-09 66.7 8.2 150 17-169 23-191 (223)
228 PRK13539 cytochrome c biogenes 97.8 7.7E-05 1.7E-09 65.5 8.4 61 99-160 127-187 (207)
229 COG1127 Ttg2A ABC-type transpo 97.8 0.00024 5.1E-09 61.7 10.9 142 17-161 31-207 (263)
230 cd03226 ABC_cobalt_CbiO_domain 97.8 0.00011 2.4E-09 64.4 9.1 149 17-169 23-193 (205)
231 smart00488 DEXDc2 DEAD-like he 97.8 4.9E-05 1.1E-09 70.1 7.1 65 6-70 9-82 (289)
232 smart00489 DEXDc3 DEAD-like he 97.8 4.9E-05 1.1E-09 70.1 7.1 65 6-70 9-82 (289)
233 cd03237 ABC_RNaseL_inhibitor_d 97.8 9.7E-05 2.1E-09 66.6 8.8 136 17-159 22-175 (246)
234 PRK06731 flhF flagellar biosyn 97.8 0.00051 1.1E-08 62.3 13.3 125 20-167 75-203 (270)
235 TIGR01188 drrA daunorubicin re 97.8 6.2E-05 1.3E-09 70.2 7.6 150 17-169 16-191 (302)
236 PRK13537 nodulation ABC transp 97.8 5.6E-05 1.2E-09 70.5 7.3 142 17-159 30-197 (306)
237 cd03269 ABC_putative_ATPase Th 97.8 2.8E-05 6.1E-10 68.5 4.9 67 99-168 128-194 (210)
238 cd03258 ABC_MetN_methionine_tr 97.8 0.00018 3.8E-09 64.5 10.1 68 99-169 140-208 (233)
239 TIGR03771 anch_rpt_ABC anchore 97.8 0.00044 9.4E-09 61.5 12.5 68 99-169 113-180 (223)
240 COG1136 SalX ABC-type antimicr 97.8 0.00011 2.4E-09 64.1 8.4 149 17-169 28-209 (226)
241 smart00847 HA2 Helicase associ 97.8 1.7E-05 3.6E-10 59.7 2.9 31 400-430 2-32 (92)
242 PF04408 HA2: Helicase associa 97.8 1.5E-05 3.2E-10 61.2 2.6 32 399-430 1-32 (102)
243 PRK09544 znuC high-affinity zi 97.8 7.2E-05 1.6E-09 67.7 7.4 150 17-169 27-188 (251)
244 PF13872 AAA_34: P-loop contai 97.8 0.0002 4.3E-09 64.8 9.8 139 21-161 63-221 (303)
245 PRK13543 cytochrome c biogenes 97.8 0.00015 3.3E-09 63.9 9.2 141 17-158 34-195 (214)
246 PRK07952 DNA replication prote 97.8 0.00076 1.7E-08 60.3 13.5 115 21-170 100-214 (244)
247 PRK13889 conjugal transfer rel 97.8 0.00037 7.9E-09 74.0 13.3 122 4-157 345-468 (988)
248 COG4608 AppF ABC-type oligopep 97.8 0.00031 6.6E-09 62.5 10.7 141 17-171 36-178 (268)
249 cd03262 ABC_HisP_GlnQ_permease 97.8 0.00044 9.5E-09 61.0 12.0 69 98-169 134-202 (213)
250 PF12340 DUF3638: Protein of u 97.8 0.00017 3.7E-09 62.8 9.0 106 3-110 21-146 (229)
251 cd03268 ABC_BcrA_bacitracin_re 97.8 0.0001 2.2E-09 64.8 7.8 67 100-169 127-193 (208)
252 PRK14723 flhF flagellar biosyn 97.7 0.0004 8.7E-09 71.2 13.0 125 19-166 184-311 (767)
253 PRK13536 nodulation factor exp 97.7 0.00012 2.6E-09 69.1 8.6 150 17-169 64-239 (340)
254 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.7 0.00025 5.5E-09 62.8 10.1 60 100-160 141-201 (218)
255 PF13307 Helicase_C_2: Helicas 97.7 1.4E-05 3.1E-10 67.4 2.0 124 211-344 7-146 (167)
256 PRK10908 cell division protein 97.7 0.00027 5.8E-09 62.8 10.2 61 99-160 137-197 (222)
257 PRK12724 flagellar biosynthesi 97.7 0.00059 1.3E-08 65.2 12.8 122 20-166 223-350 (432)
258 PF01695 IstB_IS21: IstB-like 97.7 0.0003 6.6E-09 59.9 9.9 121 14-172 41-161 (178)
259 TIGR03015 pepcterm_ATPase puta 97.7 0.0008 1.7E-08 61.7 13.6 54 20-74 43-96 (269)
260 PRK10416 signal recognition pa 97.7 0.00092 2E-08 62.4 13.9 128 19-164 113-248 (318)
261 COG4987 CydC ABC-type transpor 97.7 0.00033 7.2E-09 67.6 10.9 142 17-161 361-534 (573)
262 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.7 0.0002 4.4E-09 63.7 9.1 149 17-169 45-209 (224)
263 TIGR03608 L_ocin_972_ABC putat 97.7 5.2E-05 1.1E-09 66.6 5.1 61 99-160 134-194 (206)
264 TIGR01277 thiQ thiamine ABC tr 97.7 0.00016 3.5E-09 63.8 8.3 60 99-159 128-188 (213)
265 TIGR01166 cbiO cobalt transpor 97.7 0.00022 4.7E-09 61.7 8.9 60 99-159 127-186 (190)
266 cd03292 ABC_FtsE_transporter F 97.7 0.00027 5.8E-09 62.4 9.7 66 100-168 137-202 (214)
267 PRK13546 teichoic acids export 97.7 0.00019 4.2E-09 65.4 8.9 142 17-159 47-202 (264)
268 cd03225 ABC_cobalt_CbiO_domain 97.7 0.00016 3.5E-09 63.7 8.1 68 98-168 133-200 (211)
269 cd03266 ABC_NatA_sodium_export 97.7 9.2E-05 2E-09 65.6 6.4 67 100-169 137-203 (218)
270 COG4988 CydD ABC-type transpor 97.7 0.00027 5.9E-09 69.1 9.9 142 16-159 343-514 (559)
271 COG1124 DppF ABC-type dipeptid 97.7 0.00033 7.2E-09 61.0 9.4 139 17-161 30-203 (252)
272 PF05621 TniB: Bacterial TniB 97.7 0.00066 1.4E-08 61.6 11.8 117 21-160 62-189 (302)
273 cd03235 ABC_Metallic_Cations A 97.7 0.00058 1.3E-08 60.2 11.4 60 99-159 132-191 (213)
274 cd03265 ABC_DrrA DrrA is the A 97.7 0.00011 2.3E-09 65.3 6.7 68 99-169 131-199 (220)
275 cd03261 ABC_Org_Solvent_Resist 97.7 0.00027 6E-09 63.4 9.4 68 99-169 136-204 (235)
276 PRK13635 cbiO cobalt transport 97.6 0.00021 4.5E-09 65.9 8.5 143 17-160 30-201 (279)
277 COG1134 TagH ABC-type polysacc 97.6 0.0014 3E-08 57.3 12.9 148 17-170 50-215 (249)
278 cd03293 ABC_NrtD_SsuB_transpor 97.6 0.00013 2.8E-09 64.7 7.0 68 99-169 131-199 (220)
279 PRK11174 cysteine/glutathione 97.6 0.00015 3.3E-09 74.4 8.4 141 17-160 373-544 (588)
280 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.6 0.0003 6.5E-09 63.3 9.3 59 99-159 139-197 (238)
281 cd03248 ABCC_TAP TAP, the Tran 97.6 0.00042 9E-09 61.8 10.1 62 97-160 148-209 (226)
282 TIGR02315 ABC_phnC phosphonate 97.6 0.0004 8.7E-09 62.6 10.1 68 99-169 145-213 (243)
283 TIGR03864 PQQ_ABC_ATP ABC tran 97.6 0.00011 2.5E-09 65.9 6.5 62 98-160 131-193 (236)
284 cd03251 ABCC_MsbA MsbA is an e 97.6 0.00025 5.5E-09 63.6 8.7 61 98-160 137-197 (234)
285 cd03224 ABC_TM1139_LivF_branch 97.6 0.00017 3.8E-09 64.0 7.6 67 100-169 133-199 (222)
286 TIGR03522 GldA_ABC_ATP gliding 97.6 0.00021 4.5E-09 66.6 8.4 149 17-169 25-199 (301)
287 cd03253 ABCC_ATM1_transporter 97.6 0.00032 6.9E-09 63.0 9.3 60 99-160 137-196 (236)
288 cd03218 ABC_YhbG The ABC trans 97.6 0.0003 6.5E-09 63.0 9.0 68 99-169 133-200 (232)
289 PF07517 SecA_DEAD: SecA DEAD- 97.6 0.0001 2.2E-09 66.4 5.7 123 7-132 79-212 (266)
290 PRK13650 cbiO cobalt transport 97.6 0.00025 5.3E-09 65.4 8.5 143 17-160 30-201 (279)
291 cd03254 ABCC_Glucan_exporter_l 97.6 0.00015 3.3E-09 64.8 6.9 61 98-160 138-198 (229)
292 PRK10584 putative ABC transpor 97.6 0.00045 9.7E-09 61.7 9.9 60 99-159 146-206 (228)
293 PRK08116 hypothetical protein; 97.6 0.00034 7.5E-09 63.7 9.3 115 20-169 114-229 (268)
294 cd03256 ABC_PhnC_transporter A 97.6 0.00015 3.3E-09 65.3 6.9 69 98-169 143-212 (241)
295 PRK06893 DNA replication initi 97.6 0.00052 1.1E-08 61.2 10.2 25 20-44 39-63 (229)
296 PRK06995 flhF flagellar biosyn 97.6 0.0011 2.3E-08 65.0 13.1 126 19-167 255-383 (484)
297 PRK11160 cysteine/glutathione 97.6 0.00027 5.8E-09 72.2 9.4 142 17-160 363-534 (574)
298 cd03295 ABC_OpuCA_Osmoprotecti 97.6 0.00019 4.1E-09 64.7 7.5 60 99-159 135-195 (242)
299 COG1484 DnaC DNA replication p 97.6 0.00087 1.9E-08 60.5 11.6 122 12-170 97-218 (254)
300 PRK13657 cyclic beta-1,2-gluca 97.6 0.00011 2.4E-09 75.3 6.6 142 17-160 358-530 (588)
301 TIGR00064 ftsY signal recognit 97.6 0.0013 2.8E-08 60.0 12.8 126 20-164 72-206 (272)
302 cd03263 ABC_subfamily_A The AB 97.6 0.00028 6.2E-09 62.6 8.3 67 99-169 133-199 (220)
303 PRK13644 cbiO cobalt transport 97.6 0.00017 3.7E-09 66.2 7.0 63 96-159 133-195 (274)
304 PRK09493 glnQ glutamine ABC tr 97.6 0.00011 2.4E-09 66.1 5.7 59 100-159 137-195 (240)
305 TIGR01288 nodI ATP-binding ABC 97.6 0.00017 3.6E-09 67.3 7.0 68 99-169 135-202 (303)
306 cd03219 ABC_Mj1267_LivG_branch 97.6 0.00025 5.5E-09 63.6 8.0 67 100-169 144-210 (236)
307 TIGR02211 LolD_lipo_ex lipopro 97.6 0.00056 1.2E-08 60.7 10.1 61 99-160 141-202 (221)
308 cd03298 ABC_ThiQ_thiamine_tran 97.6 0.00028 6.1E-09 62.1 8.1 68 99-169 128-196 (211)
309 PRK08727 hypothetical protein; 97.6 0.00054 1.2E-08 61.3 10.0 34 21-55 42-75 (233)
310 PRK11176 lipid transporter ATP 97.6 0.00032 7E-09 71.9 9.7 142 17-160 366-539 (582)
311 cd03300 ABC_PotA_N PotA is an 97.6 0.00097 2.1E-08 59.7 11.7 61 98-159 129-190 (232)
312 cd03259 ABC_Carb_Solutes_like 97.6 0.00021 4.6E-09 63.0 7.1 68 99-169 130-198 (213)
313 cd03301 ABC_MalK_N The N-termi 97.6 0.00034 7.4E-09 61.7 8.4 69 98-169 129-198 (213)
314 PRK08903 DnaA regulatory inact 97.6 0.0006 1.3E-08 60.8 10.1 26 19-44 41-66 (227)
315 COG3587 Restriction endonuclea 97.6 0.00021 4.5E-09 72.2 7.6 43 22-64 76-119 (985)
316 TIGR01842 type_I_sec_PrtD type 97.6 0.00032 7E-09 71.2 9.3 143 17-160 341-514 (544)
317 KOG2340 Uncharacterized conser 97.6 0.0004 8.6E-09 66.5 9.1 318 3-349 214-670 (698)
318 TIGR03375 type_I_sec_LssB type 97.6 0.00025 5.5E-09 74.2 8.8 142 17-160 488-660 (694)
319 PRK15056 manganese/iron transp 97.6 0.0012 2.6E-08 60.6 12.2 67 100-169 143-209 (272)
320 PRK13643 cbiO cobalt transport 97.6 0.00017 3.6E-09 66.8 6.5 70 97-169 142-211 (288)
321 PRK10247 putative ABC transpor 97.5 0.0003 6.5E-09 62.6 7.8 63 97-160 135-198 (225)
322 PRK13631 cbiO cobalt transport 97.5 0.0002 4.4E-09 67.1 7.0 61 99-160 176-236 (320)
323 TIGR02314 ABC_MetN D-methionin 97.5 0.00039 8.4E-09 65.7 8.9 67 100-169 141-208 (343)
324 cd03252 ABCC_Hemolysin The ABC 97.5 0.00036 7.7E-09 62.7 8.4 61 98-160 137-197 (237)
325 PRK15177 Vi polysaccharide exp 97.5 0.00034 7.3E-09 61.7 8.0 149 17-169 10-170 (213)
326 cd03296 ABC_CysA_sulfate_impor 97.5 0.00025 5.4E-09 63.8 7.2 61 99-160 136-197 (239)
327 PRK13826 Dtr system oriT relax 97.5 0.0012 2.7E-08 70.5 13.3 122 4-157 380-503 (1102)
328 cd03250 ABCC_MRP_domain1 Domai 97.5 0.0013 2.9E-08 57.5 11.6 139 17-160 28-188 (204)
329 TIGR02324 CP_lyasePhnL phospho 97.5 0.0018 3.8E-08 57.6 12.6 61 98-159 148-208 (224)
330 cd03369 ABCC_NFT1 Domain 2 of 97.5 0.00065 1.4E-08 59.6 9.6 142 17-160 31-184 (207)
331 PRK13647 cbiO cobalt transport 97.5 0.00033 7.1E-09 64.4 8.0 68 99-169 138-205 (274)
332 PRK06921 hypothetical protein; 97.5 0.0025 5.4E-08 58.0 13.6 38 19-56 116-153 (266)
333 COG1118 CysA ABC-type sulfate/ 97.5 0.00037 7.9E-09 62.7 7.8 153 13-169 21-205 (345)
334 PRK10789 putative multidrug tr 97.5 0.00037 8E-09 71.1 9.1 140 17-160 338-510 (569)
335 COG4133 CcmA ABC-type transpor 97.5 0.00055 1.2E-08 57.1 8.3 138 17-157 25-186 (209)
336 cd03267 ABC_NatA_like Similar 97.5 0.00024 5.3E-09 63.7 6.9 68 99-169 153-221 (236)
337 PRK11247 ssuB aliphatic sulfon 97.5 0.00025 5.4E-09 64.4 7.0 144 17-169 35-201 (257)
338 TIGR02857 CydD thiol reductant 97.5 0.0004 8.7E-09 70.3 9.2 142 17-160 345-517 (529)
339 TIGR02982 heterocyst_DevA ABC 97.5 0.00037 8.1E-09 61.8 7.8 60 100-160 142-202 (220)
340 PRK11153 metN DL-methionine tr 97.5 0.00047 1E-08 65.4 8.9 67 100-169 141-208 (343)
341 PRK10771 thiQ thiamine transpo 97.5 0.00029 6.3E-09 63.1 7.2 68 99-169 129-197 (232)
342 PRK15112 antimicrobial peptide 97.5 0.0011 2.4E-08 60.7 11.1 69 98-169 148-217 (267)
343 TIGR00968 3a0106s01 sulfate AB 97.5 0.00011 2.3E-09 66.1 4.3 69 98-169 129-198 (237)
344 PRK11231 fecE iron-dicitrate t 97.5 0.00044 9.6E-09 62.8 8.4 70 97-169 136-205 (255)
345 COG4152 ABC-type uncharacteriz 97.5 0.0003 6.6E-09 61.1 6.7 143 17-160 25-190 (300)
346 TIGR01192 chvA glucan exporter 97.5 0.00042 9.1E-09 70.9 9.0 142 17-160 358-530 (585)
347 TIGR03410 urea_trans_UrtE urea 97.5 0.00032 6.9E-09 62.7 7.3 67 100-169 132-199 (230)
348 COG1132 MdlB ABC-type multidru 97.5 0.00057 1.2E-08 69.8 10.0 142 17-160 352-524 (567)
349 PRK10895 lipopolysaccharide AB 97.5 0.00031 6.8E-09 63.2 7.3 60 99-159 137-196 (241)
350 PRK13648 cbiO cobalt transport 97.5 0.00037 8E-09 63.9 7.8 62 98-160 141-203 (269)
351 COG4604 CeuD ABC-type enteroch 97.5 0.0017 3.7E-08 54.7 10.8 149 16-171 23-204 (252)
352 COG2884 FtsE Predicted ATPase 97.5 0.00075 1.6E-08 56.5 8.6 150 16-168 24-203 (223)
353 TIGR01186 proV glycine betaine 97.5 0.00017 3.7E-09 68.5 5.6 61 100-161 130-191 (363)
354 TIGR03411 urea_trans_UrtD urea 97.5 0.00047 1E-08 62.2 8.3 69 97-169 141-209 (242)
355 PRK13634 cbiO cobalt transport 97.5 0.0019 4.1E-08 59.8 12.4 70 97-169 143-213 (290)
356 PRK13640 cbiO cobalt transport 97.5 0.00049 1.1E-08 63.5 8.5 63 97-160 141-204 (282)
357 PRK11124 artP arginine transpo 97.5 0.00022 4.7E-09 64.3 6.0 68 99-169 141-208 (242)
358 PRK11831 putative ABC transpor 97.5 0.00063 1.4E-08 62.3 9.2 68 99-169 143-211 (269)
359 PRK00411 cdc6 cell division co 97.5 0.0011 2.4E-08 64.5 11.3 24 21-44 56-79 (394)
360 TIGR02204 MsbA_rel ABC transpo 97.5 0.00052 1.1E-08 70.3 9.4 59 100-160 477-535 (576)
361 TIGR01184 ntrCD nitrate transp 97.5 0.00057 1.2E-08 61.1 8.6 68 99-169 114-182 (230)
362 PRK11614 livF leucine/isoleuci 97.5 0.00038 8.2E-09 62.6 7.4 67 100-169 138-204 (237)
363 PRK09536 btuD corrinoid ABC tr 97.5 0.0003 6.6E-09 67.8 7.1 143 17-160 26-199 (402)
364 cd01124 KaiC KaiC is a circadi 97.5 0.00033 7.1E-09 60.3 6.7 45 23-69 2-46 (187)
365 COG1116 TauB ABC-type nitrate/ 97.5 0.0016 3.6E-08 57.1 10.9 144 16-162 25-193 (248)
366 PRK13646 cbiO cobalt transport 97.5 0.002 4.4E-08 59.6 12.3 70 97-169 143-213 (286)
367 PRK10619 histidine/lysine/argi 97.5 0.0021 4.6E-08 58.5 12.3 69 98-169 151-219 (257)
368 TIGR02203 MsbA_lipidA lipid A 97.4 0.0003 6.5E-09 72.0 7.4 142 17-160 355-528 (571)
369 cd03294 ABC_Pro_Gly_Bertaine T 97.4 0.00065 1.4E-08 62.2 8.9 68 99-169 160-228 (269)
370 cd03239 ABC_SMC_head The struc 97.4 0.0011 2.4E-08 56.5 9.7 59 100-159 95-157 (178)
371 COG3840 ThiQ ABC-type thiamine 97.4 0.00032 7E-09 58.1 6.0 142 17-161 22-191 (231)
372 PRK11629 lolD lipoprotein tran 97.4 0.00076 1.6E-08 60.4 9.2 60 100-160 146-206 (233)
373 PRK13545 tagH teichoic acids e 97.4 0.0014 3.1E-08 64.6 11.5 143 17-168 47-209 (549)
374 PRK14250 phosphate ABC transpo 97.4 0.00061 1.3E-08 61.4 8.5 68 99-169 131-199 (241)
375 PRK13637 cbiO cobalt transport 97.4 0.002 4.3E-08 59.6 12.1 70 97-169 142-212 (287)
376 PRK13649 cbiO cobalt transport 97.4 0.0018 3.9E-08 59.7 11.8 70 97-169 143-212 (280)
377 PRK11248 tauB taurine transpor 97.4 0.00062 1.3E-08 61.8 8.6 67 100-169 129-196 (255)
378 cd03244 ABCC_MRP_domain2 Domai 97.4 0.00042 9E-09 61.5 7.3 59 99-159 139-197 (221)
379 PRK10790 putative multidrug tr 97.4 0.00048 1E-08 70.8 8.7 59 100-160 477-535 (592)
380 cd03234 ABCG_White The White s 97.4 0.00076 1.6E-08 60.1 9.0 62 98-160 142-203 (226)
381 PF13173 AAA_14: AAA domain 97.4 0.0015 3.3E-08 52.4 9.9 27 19-45 1-27 (128)
382 cd01120 RecA-like_NTPases RecA 97.4 0.0014 3.1E-08 54.7 10.3 34 23-57 2-35 (165)
383 PRK13632 cbiO cobalt transport 97.4 0.00043 9.3E-09 63.5 7.5 62 98-160 141-203 (271)
384 PRK10070 glycine betaine trans 97.4 0.0009 2E-08 64.5 9.9 61 99-160 164-225 (400)
385 PRK13638 cbiO cobalt transport 97.4 0.00061 1.3E-08 62.5 8.5 70 97-169 134-203 (271)
386 PRK13633 cobalt transporter AT 97.4 0.00046 9.9E-09 63.7 7.6 64 97-161 142-206 (280)
387 PRK08084 DNA replication initi 97.4 0.0012 2.6E-08 59.1 10.0 36 19-55 44-79 (235)
388 PRK08939 primosomal protein Dn 97.4 0.0027 5.9E-08 58.9 12.7 113 19-169 155-269 (306)
389 cd03260 ABC_PstB_phosphate_tra 97.4 0.00063 1.4E-08 60.7 8.2 68 98-169 140-207 (227)
390 PRK11300 livG leucine/isoleuci 97.4 0.00046 1E-08 62.7 7.5 59 100-159 154-213 (255)
391 TIGR01194 cyc_pep_trnsptr cycl 97.4 0.00069 1.5E-08 68.9 9.4 143 17-160 365-531 (555)
392 cd03291 ABCC_CFTR1 The CFTR su 97.4 0.0017 3.7E-08 59.7 11.1 141 17-160 60-219 (282)
393 PRK11264 putative amino-acid A 97.4 0.00024 5.1E-09 64.4 5.5 67 100-169 145-211 (250)
394 PRK12377 putative replication 97.4 0.0033 7.1E-08 56.4 12.6 113 20-169 101-214 (248)
395 TIGR01193 bacteriocin_ABC ABC- 97.4 0.00035 7.6E-09 73.3 7.4 139 17-160 497-669 (708)
396 TIGR03797 NHPM_micro_ABC2 NHPM 97.4 0.00025 5.5E-09 74.1 6.4 139 17-159 476-644 (686)
397 PRK09112 DNA polymerase III su 97.4 0.0024 5.2E-08 60.5 12.3 48 107-157 131-178 (351)
398 cd03297 ABC_ModC_molybdenum_tr 97.4 0.00041 8.8E-09 61.3 6.7 61 98-159 130-191 (214)
399 PF05127 Helicase_RecD: Helica 97.4 0.0002 4.3E-09 60.2 4.4 118 24-162 1-125 (177)
400 PRK13642 cbiO cobalt transport 97.4 0.00059 1.3E-08 62.8 7.9 64 97-161 138-202 (277)
401 cd03236 ABC_RNaseL_inhibitor_d 97.4 0.0023 5E-08 58.0 11.6 35 16-50 22-56 (255)
402 PRK10418 nikD nickel transport 97.4 0.0012 2.5E-08 60.0 9.8 61 98-159 139-200 (254)
403 cd03299 ABC_ModC_like Archeal 97.4 0.00048 1E-08 61.8 7.1 60 99-159 129-189 (235)
404 PRK11650 ugpC glycerol-3-phosp 97.4 0.0022 4.7E-08 61.1 11.8 68 99-169 134-202 (356)
405 TIGR03873 F420-0_ABC_ATP propo 97.4 0.00065 1.4E-08 61.8 8.0 70 97-169 135-204 (256)
406 PRK09183 transposase/IS protei 97.4 0.0016 3.4E-08 59.2 10.4 38 17-55 99-136 (259)
407 PRK06835 DNA replication prote 97.4 0.0019 4.2E-08 60.5 11.2 116 19-169 182-297 (329)
408 TIGR02770 nickel_nikD nickel i 97.4 0.00078 1.7E-08 60.2 8.3 70 97-169 123-193 (230)
409 COG3839 MalK ABC-type sugar tr 97.4 5.4E-05 1.2E-09 70.2 0.8 144 16-164 25-196 (338)
410 PRK13652 cbiO cobalt transport 97.4 0.00053 1.2E-08 63.1 7.4 70 97-169 135-205 (277)
411 PRK10522 multidrug transporter 97.4 0.0009 1.9E-08 68.0 9.8 142 17-160 346-510 (547)
412 PRK13651 cobalt transporter AT 97.4 0.0025 5.5E-08 59.4 12.0 68 99-169 165-232 (305)
413 TIGR00958 3a01208 Conjugate Tr 97.4 0.0007 1.5E-08 71.0 9.2 140 17-160 504-674 (711)
414 COG4525 TauB ABC-type taurine 97.4 0.0048 1E-07 52.0 12.1 140 16-163 27-196 (259)
415 TIGR03796 NHPM_micro_ABC1 NHPM 97.4 0.00051 1.1E-08 72.1 8.0 140 17-160 502-672 (710)
416 cd03264 ABC_drug_resistance_li 97.4 0.00055 1.2E-08 60.3 7.0 67 99-169 130-196 (211)
417 cd03257 ABC_NikE_OppD_transpor 97.4 0.0013 2.7E-08 58.7 9.5 68 99-169 145-213 (228)
418 PRK13636 cbiO cobalt transport 97.4 0.0012 2.5E-08 61.1 9.5 71 96-169 138-209 (283)
419 TIGR03265 PhnT2 putative 2-ami 97.4 0.002 4.4E-08 61.3 11.3 67 99-168 134-201 (353)
420 TIGR03499 FlhF flagellar biosy 97.4 0.00094 2E-08 61.5 8.7 86 19-126 193-281 (282)
421 PRK13639 cbiO cobalt transport 97.4 0.00057 1.2E-08 62.8 7.3 68 99-169 137-204 (275)
422 COG2274 SunT ABC-type bacterio 97.4 0.00094 2E-08 68.8 9.5 143 17-161 496-669 (709)
423 TIGR02782 TrbB_P P-type conjug 97.4 0.00048 1E-08 63.8 6.8 50 12-61 124-174 (299)
424 cd03289 ABCC_CFTR2 The CFTR su 97.3 0.001 2.2E-08 60.9 8.9 59 100-160 139-197 (275)
425 cd03245 ABCC_bacteriocin_expor 97.3 0.00049 1.1E-08 61.1 6.7 60 99-160 140-199 (220)
426 PRK05642 DNA replication initi 97.3 0.00077 1.7E-08 60.3 7.9 35 21-56 46-80 (234)
427 PRK10419 nikE nickel transport 97.3 0.00094 2E-08 61.2 8.7 60 99-159 151-211 (268)
428 PRK11308 dppF dipeptide transp 97.3 0.00077 1.7E-08 63.4 8.2 60 100-160 155-215 (327)
429 PF05729 NACHT: NACHT domain 97.3 0.0013 2.9E-08 55.1 9.0 58 120-177 84-147 (166)
430 PRK11701 phnK phosphonate C-P 97.3 0.0027 5.8E-08 57.8 11.6 69 98-169 150-219 (258)
431 PRK00771 signal recognition pa 97.3 0.0041 8.9E-08 60.5 13.3 121 21-162 96-219 (437)
432 PRK14956 DNA polymerase III su 97.3 0.0018 3.8E-08 63.2 10.7 31 15-45 32-65 (484)
433 PF00580 UvrD-helicase: UvrD/R 97.3 0.00038 8.3E-09 65.3 6.2 66 7-74 2-70 (315)
434 COG0552 FtsY Signal recognitio 97.3 0.0037 8.1E-08 57.3 12.1 132 21-170 140-281 (340)
435 PRK10575 iron-hydroxamate tran 97.3 0.00074 1.6E-08 61.8 7.8 60 100-160 148-208 (265)
436 KOG0386 Chromatin remodeling c 97.3 0.00053 1.2E-08 70.4 7.3 113 211-351 724-842 (1157)
437 PRK10253 iron-enterobactin tra 97.3 0.00068 1.5E-08 62.0 7.6 70 97-169 141-211 (265)
438 PRK13548 hmuV hemin importer A 97.3 0.00087 1.9E-08 61.0 8.2 62 97-159 132-200 (258)
439 PRK12402 replication factor C 97.3 0.0019 4.2E-08 61.3 11.0 35 11-45 25-61 (337)
440 PRK11000 maltose/maltodextrin 97.3 0.0024 5.3E-08 61.2 11.5 60 99-159 133-193 (369)
441 TIGR03005 ectoine_ehuA ectoine 97.3 0.00023 4.9E-09 64.6 4.3 60 100-160 147-207 (252)
442 PRK07003 DNA polymerase III su 97.3 0.003 6.4E-08 64.5 12.4 42 113-157 115-156 (830)
443 COG4178 ABC-type uncharacteriz 97.3 0.00085 1.8E-08 66.8 8.2 135 17-159 416-573 (604)
444 COG4619 ABC-type uncharacteriz 97.3 0.0025 5.5E-08 52.2 9.4 42 16-57 25-66 (223)
445 TIGR00972 3a0107s01c2 phosphat 97.3 0.00036 7.8E-09 63.1 5.3 68 98-169 143-210 (247)
446 PRK15439 autoinducer 2 ABC tra 97.3 0.00061 1.3E-08 68.5 7.4 68 99-169 140-207 (510)
447 PRK15079 oligopeptide ABC tran 97.3 0.0012 2.5E-08 62.4 8.8 61 99-160 161-222 (331)
448 PRK11144 modC molybdate transp 97.3 0.00028 6.1E-09 67.2 4.7 68 99-169 128-196 (352)
449 PRK09452 potA putrescine/sperm 97.3 0.0028 6.2E-08 60.7 11.5 66 100-168 145-211 (375)
450 PRK13641 cbiO cobalt transport 97.3 0.0036 7.8E-08 57.9 11.9 70 97-169 143-212 (287)
451 PRK11432 fbpC ferric transport 97.3 0.0028 6.2E-08 60.2 11.4 67 99-168 136-203 (351)
452 PRK08533 flagellar accessory p 97.3 0.0028 6.1E-08 56.4 10.8 51 17-69 21-71 (230)
453 TIGR02323 CP_lyasePhnK phospho 97.3 0.002 4.2E-08 58.5 10.0 60 99-159 148-208 (253)
454 TIGR03258 PhnT 2-aminoethylpho 97.3 0.003 6.5E-08 60.2 11.4 67 99-168 137-205 (362)
455 PRK10867 signal recognition pa 97.3 0.0033 7.2E-08 60.9 11.8 123 21-161 101-226 (433)
456 COG1875 NYN ribonuclease and A 97.3 0.0018 3.8E-08 59.7 9.2 59 4-62 227-289 (436)
457 COG3910 Predicted ATPase [Gene 97.3 0.0049 1.1E-07 51.5 10.9 147 3-159 22-187 (233)
458 TIGR03420 DnaA_homol_Hda DnaA 97.3 0.0034 7.3E-08 55.9 11.0 26 19-44 37-62 (226)
459 PRK14958 DNA polymerase III su 97.3 0.004 8.7E-08 62.1 12.5 42 113-157 115-156 (509)
460 PRK14247 phosphate ABC transpo 97.2 0.00096 2.1E-08 60.5 7.5 60 98-159 145-204 (250)
461 KOG1802 RNA helicase nonsense 97.2 0.00042 9.1E-09 68.1 5.2 65 6-70 411-475 (935)
462 TIGR00376 DNA helicase, putati 97.2 0.00071 1.5E-08 69.3 7.2 66 5-71 157-223 (637)
463 COG2256 MGS1 ATPase related to 97.2 0.0052 1.1E-07 57.5 12.0 30 15-44 41-72 (436)
464 PRK13833 conjugal transfer pro 97.2 0.00069 1.5E-08 63.0 6.4 50 13-62 137-187 (323)
465 TIGR03415 ABC_choXWV_ATP choli 97.2 0.00091 2E-08 64.0 7.4 60 100-160 165-225 (382)
466 TIGR01846 type_I_sec_HlyB type 97.2 0.0011 2.4E-08 69.4 8.7 141 17-160 480-652 (694)
467 COG1135 AbcC ABC-type metal io 97.2 0.0028 6E-08 57.3 9.8 143 16-161 28-203 (339)
468 PRK14949 DNA polymerase III su 97.2 0.0057 1.2E-07 63.8 13.3 40 114-156 116-155 (944)
469 TIGR02142 modC_ABC molybdenum 97.2 0.00035 7.5E-09 66.7 4.4 66 100-168 132-198 (354)
470 PLN03232 ABC transporter C fam 97.2 0.0013 2.8E-08 74.3 9.6 142 17-160 1259-1430(1495)
471 PRK06645 DNA polymerase III su 97.2 0.0049 1.1E-07 61.1 12.5 29 17-45 37-68 (507)
472 TIGR01978 sufC FeS assembly AT 97.2 0.00098 2.1E-08 60.1 7.0 66 100-168 145-210 (243)
473 TIGR02769 nickel_nikE nickel i 97.2 0.0022 4.7E-08 58.7 9.3 68 99-169 150-218 (265)
474 PRK10851 sulfate/thiosulfate t 97.2 0.0051 1.1E-07 58.6 12.0 68 99-169 136-204 (353)
475 COG3842 PotA ABC-type spermidi 97.2 0.0002 4.4E-09 66.8 2.4 146 16-164 27-199 (352)
476 cd03288 ABCC_SUR2 The SUR doma 97.2 0.0018 3.9E-08 58.9 8.6 60 99-160 156-215 (257)
477 PRK14087 dnaA chromosomal repl 97.2 0.0034 7.5E-08 61.7 11.0 37 21-57 142-179 (450)
478 COG0396 sufC Cysteine desulfur 97.2 0.0014 3.1E-08 56.6 7.2 43 115-158 160-202 (251)
479 COG1117 PstB ABC-type phosphat 97.2 0.00057 1.2E-08 58.3 4.7 77 100-178 150-230 (253)
480 PF00004 AAA: ATPase family as 97.2 0.00071 1.5E-08 54.4 5.3 22 23-44 1-22 (132)
481 PRK09111 DNA polymerase III su 97.2 0.0074 1.6E-07 61.2 13.6 48 107-157 122-169 (598)
482 PF01637 Arch_ATPase: Archaeal 97.2 0.0024 5.2E-08 56.9 9.3 34 11-44 9-44 (234)
483 PLN03130 ABC transporter C fam 97.2 0.0014 3E-08 74.3 9.3 143 16-160 1261-1433(1622)
484 PHA02544 44 clamp loader, smal 97.2 0.0035 7.6E-08 58.9 10.7 33 12-44 32-67 (316)
485 PRK06067 flagellar accessory p 97.2 0.0035 7.5E-08 56.2 10.2 51 17-69 22-72 (234)
486 PRK10938 putative molybdenum t 97.2 0.0021 4.6E-08 64.4 9.6 150 17-169 26-202 (490)
487 cd03290 ABCC_SUR1_N The SUR do 97.2 0.0016 3.4E-08 57.7 7.8 63 97-160 138-202 (218)
488 PRK09580 sufC cysteine desulfu 97.2 0.0034 7.4E-08 56.8 10.1 59 100-159 146-204 (248)
489 PRK07764 DNA polymerase III su 97.2 0.0037 8.1E-08 65.6 11.6 43 112-157 115-157 (824)
490 cd03227 ABC_Class2 ABC-type Cl 97.2 0.002 4.3E-08 54.1 8.0 45 116-163 98-142 (162)
491 PRK12323 DNA polymerase III su 97.2 0.0057 1.2E-07 61.6 12.2 42 113-157 120-161 (700)
492 PRK00149 dnaA chromosomal repl 97.2 0.0034 7.4E-08 62.0 10.9 36 21-56 149-185 (450)
493 CHL00131 ycf16 sulfate ABC tra 97.2 0.001 2.2E-08 60.4 6.6 60 100-160 152-211 (252)
494 PRK14961 DNA polymerase III su 97.1 0.0062 1.3E-07 58.4 12.2 30 15-44 30-62 (363)
495 PRK08691 DNA polymerase III su 97.1 0.0049 1.1E-07 62.7 11.8 42 113-157 115-156 (709)
496 TIGR01425 SRP54_euk signal rec 97.1 0.0066 1.4E-07 58.6 12.2 123 21-161 101-225 (429)
497 COG4962 CpaF Flp pilus assembl 97.1 0.00082 1.8E-08 61.7 5.8 54 9-64 161-215 (355)
498 PRK09984 phosphonate/organopho 97.1 0.00084 1.8E-08 61.3 6.0 61 99-160 152-213 (262)
499 PRK13547 hmuV hemin importer A 97.1 0.0022 4.7E-08 58.8 8.7 61 99-160 145-215 (272)
500 PRK13851 type IV secretion sys 97.1 0.00083 1.8E-08 63.2 6.0 48 13-62 155-202 (344)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-87 Score=636.83 Aligned_cols=423 Identities=58% Similarity=0.945 Sum_probs=410.3
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeee
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g 82 (432)
.||++++..+++..+.+++.+||.|+|||||||++|+++....+...+++.|++|+|..|..++++++.+.+...|..+|
T Consensus 49 ~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VG 128 (674)
T KOG0922|consen 49 SLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVG 128 (674)
T ss_pred cCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceee
Confidence 69999999999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred eeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccCh
Q 014006 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (432)
Q Consensus 83 ~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~ 162 (432)
|.+++++....++.|.|+|.|+|++.++.++.++++++||+||||+|.+.+|.++.+++.+++.++. .++|+||||++.
T Consensus 129 Y~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~-LklIimSATlda 207 (674)
T KOG0922|consen 129 YTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPD-LKLIIMSATLDA 207 (674)
T ss_pred eEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCC-ceEEEEeeeecH
Confidence 9999999999999999999999999999999999999999999999999999999999999999886 999999999999
Q ss_pred HHHHhhccCCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccC
Q 014006 163 EKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDE 242 (432)
Q Consensus 163 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~ 242 (432)
+.+++||.+++++.++|+.+|+++.|...+..+|+++.+..+.+++.++++|.+|||++++++++.++..|.+....+..
T Consensus 208 ~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~ 287 (674)
T KOG0922|consen 208 EKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPE 287 (674)
T ss_pred HHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998776665
Q ss_pred CCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecH
Q 014006 243 GSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISK 322 (432)
Q Consensus 243 ~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~ 322 (432)
. ++. .+.++||.|+.+++.++++..+.|.++|++|||++|.+++||+|.+|||+|+.|...|++.+|+..+...|+|+
T Consensus 288 ~-~~~-~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISk 365 (674)
T KOG0922|consen 288 D-CPE-LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISK 365 (674)
T ss_pred c-Ccc-eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechH
Confidence 4 222 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCCCCeEEEecCccchhhcCCCCCCCccccCCchHHHHHHhhCCCCCCccccccCCCCCCHHHHHHHHH
Q 014006 323 VQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALK 402 (432)
Q Consensus 323 ~~~~qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~~~l~~~~~ 402 (432)
++..||+|||||.+||+||+||++++|+. |+..+.|||+|++|...+|+++++|+.+ +..|+|+|||+.+++..|++
T Consensus 366 asA~QRaGRAGRt~pGkcyRLYte~~~~~-~~~~~~PEI~R~~Ls~~vL~Lkalgi~d--~l~F~f~d~P~~~~l~~AL~ 442 (674)
T KOG0922|consen 366 ASANQRAGRAGRTGPGKCYRLYTESAYDK-MPLQTVPEIQRVNLSSAVLQLKALGIND--PLRFPFIDPPPPEALEEALE 442 (674)
T ss_pred HHHhhhcccCCCCCCceEEEeeeHHHHhh-cccCCCCceeeechHHHHHHHHhcCCCC--cccCCCCCCCChHHHHHHHH
Confidence 99999999999999999999999999977 9999999999999999999999999999 99999999999999999999
Q ss_pred HHHHccCCCCCCCCCH-HHHHhhcCCCCCC
Q 014006 403 QLYLIDAIDENGSITS-IGRTMAGTSFFAL 431 (432)
Q Consensus 403 ~L~~~g~i~~~~~~t~-lG~~~~~l~~~~~ 431 (432)
.|..+|++|++|.+|. +|+.|+.+|++|.
T Consensus 443 ~L~~lgald~~g~lt~p~G~~ma~~Pl~p~ 472 (674)
T KOG0922|consen 443 ELYSLGALDDRGKLTSPLGRQMAELPLEPH 472 (674)
T ss_pred HHHhcCcccCcCCcCchHHhhhhhcCCCcc
Confidence 9999999999999999 9999999999984
No 2
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-88 Score=633.20 Aligned_cols=426 Identities=53% Similarity=0.924 Sum_probs=414.0
Q ss_pred CCCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcE-EEecccchhhhHHHHHHHHHHhCCccCCe
Q 014006 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-IGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (432)
Q Consensus 2 ~~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~-vl~~~P~~~l~~q~~~~~~~~~~~~~~~~ 80 (432)
+.||||.++.+++.++..+++++|.|.|||||||++|+++....+..+++ +-|++|+|..|..++.+++++.|...|..
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~e 341 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHE 341 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccc
Confidence 37999999999999999999999999999999999999999988876665 99999999999999999999999999999
Q ss_pred eeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 81 ~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
+||.+++++....++.+-|+|.|+|++.++..+.|..+++|||||||+|.+.+|.+..+++.+.+.+|. .+++++|||+
T Consensus 342 VGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~Rpd-LKllIsSAT~ 420 (902)
T KOG0923|consen 342 VGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPD-LKLLISSATM 420 (902)
T ss_pred cceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCc-ceEEeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999986 9999999999
Q ss_pred ChHHHHhhccCCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhc
Q 014006 161 DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (432)
Q Consensus 161 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~ 240 (432)
+.+.++.||++++++.++|+.|||+++|...+..+|+++++..+++++.+.+.|.+|||+.+.++++.+...|.+.+..+
T Consensus 421 DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~L 500 (902)
T KOG0923|consen 421 DAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRL 500 (902)
T ss_pred CHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred cCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeee
Q 014006 241 DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQI 320 (432)
Q Consensus 241 ~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~ 320 (432)
.+. ...+-+.++|++||.+.+.+|++..++|.++|++|||++|.+++|++|.+|||.|+.|++.|+|++|+.++...|+
T Consensus 501 Gsk-i~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~pi 579 (902)
T KOG0923|consen 501 GSK-IRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPI 579 (902)
T ss_pred ccc-cceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeee
Confidence 664 3578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHhhHHHhhcccCCCCCCeEEEecCccchhhcCCCCCCCccccCCchHHHHHHhhCCCCCCccccccCCCCCCHHHHHHH
Q 014006 321 SKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDA 400 (432)
Q Consensus 321 s~~~~~qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~~~l~~~ 400 (432)
|+++..||+|||||.+||+||+||+...|.+.+...+.|||+|.+|...+|.|+++|+.+ +..|+|+|||+.+++..|
T Consensus 580 SKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~D--l~~FdFmDpPp~etL~~a 657 (902)
T KOG0923|consen 580 SKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHD--LIHFDFLDPPPTETLLKA 657 (902)
T ss_pred chhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcch--hcccccCCCCChHHHHHH
Confidence 999999999999999999999999999999989999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHccCCCCCCCCCHHHHHhhcCCCCCC
Q 014006 401 LKQLYLIDAIDENGSITSIGRTMAGTSFFAL 431 (432)
Q Consensus 401 ~~~L~~~g~i~~~~~~t~lG~~~~~l~~~~~ 431 (432)
++.|+.+||++..|+||.+|+.||++|++|+
T Consensus 658 LE~LyaLGALn~~GeLTk~GrrMaEfP~dPm 688 (902)
T KOG0923|consen 658 LEQLYALGALNHLGELTKLGRRMAEFPVDPM 688 (902)
T ss_pred HHHHHHhhccccccchhhhhhhhhhcCCCHH
Confidence 9999999999999999999999999999986
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-82 Score=595.71 Aligned_cols=425 Identities=52% Similarity=0.901 Sum_probs=413.1
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeee
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g 82 (432)
.||++..+.+++..|.+++.++|+|.|||||||++++++....+...+.+-|++|+|..|..++++++++.+...|..+|
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 69999999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred eeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccCh
Q 014006 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (432)
Q Consensus 83 ~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~ 162 (432)
|++++++.....+.|-|+|.|.|++..+.+..|.++++||+||||+|.++.|.+..+++.+++.+.+ .++|.+|||++.
T Consensus 434 YsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrd-lKliVtSATm~a 512 (1042)
T KOG0924|consen 434 YSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRD-LKLIVTSATMDA 512 (1042)
T ss_pred eEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhcc-ceEEEeeccccH
Confidence 9999999999999999999999999999999999999999999999999999999999999998875 999999999999
Q ss_pred HHHHhhccCCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccC
Q 014006 163 EKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDE 242 (432)
Q Consensus 163 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~ 242 (432)
..+.+||++++.+.++|+.||+++.|...+..+|++.++++.+.++.....|.+|||.+++++++..+..+...+..+..
T Consensus 513 ~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~ 592 (1042)
T KOG0924|consen 513 QKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDS 592 (1042)
T ss_pred HHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888776
Q ss_pred CCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecH
Q 014006 243 GSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISK 322 (432)
Q Consensus 243 ~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~ 322 (432)
...-++.++++++.||.+-+.++++....|.+++||||+++|.++++|++.+|||+|++|...|++..|+..+...|||+
T Consensus 593 ~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~ 672 (1042)
T KOG0924|consen 593 APTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQ 672 (1042)
T ss_pred CCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechh
Confidence 53448999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhcccCCCCCCeEEEecCccchhhcCCCCCCCccccCCchHHHHHHhhCCCCCCccccccCCCCCCHHHHHHHHH
Q 014006 323 VQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALK 402 (432)
Q Consensus 323 ~~~~qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~~~l~~~~~ 402 (432)
++..||+|||||.+||.||+||++..|.+.|...+.|||+|.++...+|.|+++++.+ +..|+|+|||+.+.+..++-
T Consensus 673 AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~d--ll~FdFmD~Pped~~~~sly 750 (1042)
T KOG0924|consen 673 ANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDD--LLKFDFMDPPPEDNLLNSLY 750 (1042)
T ss_pred ccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhh--hhCCCcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999998889999999999999999999999999998 99999999999999999999
Q ss_pred HHHHccCCCCCCCCCHHHHHhhcCCCCC
Q 014006 403 QLYLIDAIDENGSITSIGRTMAGTSFFA 430 (432)
Q Consensus 403 ~L~~~g~i~~~~~~t~lG~~~~~l~~~~ 430 (432)
.|+.+||+++.|.||++|+.|+.+|++|
T Consensus 751 ~Lw~LGAl~~~g~LT~lG~~MvefpLDP 778 (1042)
T KOG0924|consen 751 QLWTLGALDNTGQLTPLGRKMVEFPLDP 778 (1042)
T ss_pred HHHHhhccccCCccchhhHHhhhCCCCc
Confidence 9999999999999999999999999998
No 4
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.2e-81 Score=628.60 Aligned_cols=420 Identities=51% Similarity=0.822 Sum_probs=404.1
Q ss_pred CCCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCee
Q 014006 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (432)
Q Consensus 2 ~~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~ 81 (432)
+.||++..+.+++.++.+++.++|+|||||||||++|.++....+..++.+.+++|+|..|..++++++++++..+|..+
T Consensus 47 ~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 47 SGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred ccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 47999999999999999999999999999999999999999988877789999999999999999999999999999999
Q ss_pred eeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccC
Q 014006 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (432)
Q Consensus 82 g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~ 161 (432)
||.+++++..++++.|.|+|.|+|++.+..++.++.+++|||||+|||+++.|+++.+++.++..++++.++|.||||++
T Consensus 127 GY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld 206 (845)
T COG1643 127 GYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLD 206 (845)
T ss_pred eEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998876699999999999
Q ss_pred hHHHHhhccCCCeeecCCCCCceeEEeCCCCCcch-HHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhc
Q 014006 162 GEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSY-LESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (432)
Q Consensus 162 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~ 240 (432)
.+.+++||+++++++++++.||++++|......++ +++.+.....++..+..|.+|||+|+.++++.+++.|.+. .+
T Consensus 207 ~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~--~l 284 (845)
T COG1643 207 AERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKA--EL 284 (845)
T ss_pred HHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhc--cc
Confidence 99999999999999999999999999988887887 8889999999999999999999999999999999999982 11
Q ss_pred cCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeee
Q 014006 241 DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQI 320 (432)
Q Consensus 241 ~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~ 320 (432)
...+.+.++||.|+.+++.++++....|+++||+|||++|.|++||+|++|||+|+.+.+.||+.+|+..+...|+
T Consensus 285 ----~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~I 360 (845)
T COG1643 285 ----GDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPI 360 (845)
T ss_pred ----cCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEe
Confidence 1368899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHhhHHHhhcccCCCCCCeEEEecCccchhhcCCCCCCCccccCCchHHHHHHhhCCCC-CCccccccCCCCCCHHHHHH
Q 014006 321 SKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLS-DINVLKFDFLDPPSSESLED 399 (432)
Q Consensus 321 s~~~~~qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~l~l~~~~~~-~~~~~~~~~~~~p~~~~l~~ 399 (432)
|++++.||+|||||.++|.||+||+++++.. |++++.|||++++|..++|+++++|+. + ...|+|+|+|+..++..
T Consensus 361 SqAsA~QRaGRAGR~~pGicyRLyse~~~~~-~~~~t~PEIlrtdLs~~vL~l~~~G~~~d--~~~f~fld~P~~~~i~~ 437 (845)
T COG1643 361 SKASADQRAGRAGRTGPGICYRLYSEEDFLA-FPEFTLPEILRTDLSGLVLQLKSLGIGQD--IAPFPFLDPPPEAAIQA 437 (845)
T ss_pred chhhhhhhccccccCCCceEEEecCHHHHHh-cccCCChhhhhcchHHHHHHHHhcCCCCC--cccCccCCCCChHHHHH
Confidence 9999999999999999999999999999996 999999999999999999999999995 8 89999999999999999
Q ss_pred HHHHHHHccCCCCCCCCCHHHHHhhcCCCCC
Q 014006 400 ALKQLYLIDAIDENGSITSIGRTMAGTSFFA 430 (432)
Q Consensus 400 ~~~~L~~~g~i~~~~~~t~lG~~~~~l~~~~ 430 (432)
|++.|..+||+|.+|.+|++|+.|+.||++|
T Consensus 438 A~~~L~~LGAld~~g~LT~lG~~ms~lpldp 468 (845)
T COG1643 438 ALTLLQELGALDDSGKLTPLGKQMSLLPLDP 468 (845)
T ss_pred HHHHHHHcCCcCCCCCCCHHHHHHHhCCCCh
Confidence 9999999999999999999999999999997
No 5
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.7e-79 Score=625.24 Aligned_cols=419 Identities=34% Similarity=0.556 Sum_probs=381.5
Q ss_pred CCCCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCe
Q 014006 1 MANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (432)
Q Consensus 1 ~~~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~ 80 (432)
|++||++++.+++++++.++++++++||||||||+.++..+...... .+++++++|+|++|.|+++++++.++..+|..
T Consensus 1 ~~~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~ 79 (812)
T PRK11664 1 MSSLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-NGKIIMLEPRRLAARNVAQRLAEQLGEKPGET 79 (812)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-CCeEEEECChHHHHHHHHHHHHHHhCcccCce
Confidence 78999999999999999999999999999999998888777654332 35899999999999999999999999999999
Q ss_pred eeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 81 ~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
+||.++++......++|+|+|+|++++++..++.++++++|||||+|+|+++.|..+.+++.++...+++.|+|+||||+
T Consensus 80 VGy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl 159 (812)
T PRK11664 80 VGYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATL 159 (812)
T ss_pred EEEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCC
Confidence 99999988887888899999999999999888899999999999999999999998888888776555569999999999
Q ss_pred ChHHHHhhccCCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhc
Q 014006 161 DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (432)
Q Consensus 161 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~ 240 (432)
+.+.+++|+.+++++.++++.+|++.+|......+++...+...+........+++|||+|++++++.+++.|.+...
T Consensus 160 ~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~-- 237 (812)
T PRK11664 160 DNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVA-- 237 (812)
T ss_pred CHHHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhcc--
Confidence 998899999999999999999999998877665555544333333333334578999999999999999999986321
Q ss_pred cCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeee
Q 014006 241 DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQI 320 (432)
Q Consensus 241 ~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~ 320 (432)
.++.+.++||+|+.++|.++++.|++|+++||||||++|+|||||+|++|||+|+++...||+.+|+..+...|+
T Consensus 238 -----~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~i 312 (812)
T PRK11664 238 -----SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRI 312 (812)
T ss_pred -----CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEee
Confidence 367899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHhhHHHhhcccCCCCCCeEEEecCccchhhcCCCCCCCccccCCchHHHHHHhhCCCCCCccccccCCCCCCHHHHHHH
Q 014006 321 SKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDA 400 (432)
Q Consensus 321 s~~~~~qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~~~l~~~ 400 (432)
|+++|.||+|||||.++|.||+||++.++.. +.++..|||++++|..++|.++.+|+.+ ...|+|+|||+.++++.|
T Consensus 313 Skasa~QR~GRaGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~dL~~~~L~l~~~g~~~--~~~~~~ld~P~~~~~~~A 389 (812)
T PRK11664 313 SQASMTQRAGRAGRLEPGICLHLYSKEQAER-AAAQSEPEILHSDLSGLLLELLQWGCHD--PAQLSWLDQPPAAALAAA 389 (812)
T ss_pred chhhhhhhccccCCCCCcEEEEecCHHHHhh-CccCCCCceeccchHHHHHHHHHcCCCC--HHhCCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999987 9999999999999999999999999988 788999999999999999
Q ss_pred HHHHHHccCCCCCCCCCHHHHHhhcCCCCC
Q 014006 401 LKQLYLIDAIDENGSITSIGRTMAGTSFFA 430 (432)
Q Consensus 401 ~~~L~~~g~i~~~~~~t~lG~~~~~l~~~~ 430 (432)
++.|..+||+|++|++|++|+.|++||++|
T Consensus 390 ~~~L~~lgald~~g~lT~~G~~m~~lp~~P 419 (812)
T PRK11664 390 KRLLQQLGALDGQGRLTARGRKMAALGNDP 419 (812)
T ss_pred HHHHHHCCCCCCCCCcCHHHHHHHhcCCch
Confidence 999999999999999999999999999987
No 6
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=8.9e-79 Score=619.82 Aligned_cols=416 Identities=36% Similarity=0.582 Sum_probs=378.3
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeee
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~ 83 (432)
||++++..++++++.++++++++|+||||||++++..+..... .++++++++|+|++|.|+++++++.++..+|..+||
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 7999999999999999999999999999999998887765542 456999999999999999999999999999999999
Q ss_pred eeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChH
Q 014006 84 AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGE 163 (432)
Q Consensus 84 ~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~ 163 (432)
.++++.....+++|+|+|+|+|++++..++.++++++|||||+|+|+++.++.+.+++.+....+++.|+|+||||++.+
T Consensus 80 ~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~ 159 (819)
T TIGR01970 80 RVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE 159 (819)
T ss_pred EEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH
Confidence 99998887788999999999999999888899999999999999999999998888887776555569999999999998
Q ss_pred HHHhhccCCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCC
Q 014006 164 KVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEG 243 (432)
Q Consensus 164 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~ 243 (432)
.+.+||++++++.++++.+|++.+|......+++...+...+........+++|||+|++++++.++..|.+...
T Consensus 160 ~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~----- 234 (819)
T TIGR01970 160 RLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLD----- 234 (819)
T ss_pred HHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcC-----
Confidence 899999999999999999999999876655444433332222222234568999999999999999999987421
Q ss_pred CCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHh
Q 014006 244 SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKV 323 (432)
Q Consensus 244 ~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~ 323 (432)
.++.+.++||+|++++|.++++.|++|+++||||||++|+|||||+|++|||+|+++...||+.+|+..+...|+|++
T Consensus 235 --~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSka 312 (819)
T TIGR01970 235 --SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQA 312 (819)
T ss_pred --CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHH
Confidence 378899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcccCCCCCCeEEEecCccchhhcCCCCCCCccccCCchHHHHHHhhCCCCCCccccccCCCCCCHHHHHHHHHH
Q 014006 324 QANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALKQ 403 (432)
Q Consensus 324 ~~~qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~ 403 (432)
+|.||+|||||.++|.||+||+++++.. +.++..|||++.+|..++|+++.+|+.+ ...|+|+++|+.+++..|++.
T Consensus 313 sa~QR~GRAGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~~L~~~~L~l~~~g~~~--~~~~~~l~~P~~~~i~~a~~~ 389 (819)
T TIGR01970 313 SATQRAGRAGRLEPGVCYRLWSEEQHQR-LPAQDEPEILQADLSGLALELAQWGAKD--PSDLRWLDAPPSVALAAARQL 389 (819)
T ss_pred HHHhhhhhcCCCCCCEEEEeCCHHHHHh-hhcCCCcceeccCcHHHHHHHHHcCCCC--hhhCCCCCCcCHHHHHHHHHH
Confidence 9999999999999999999999999987 9999999999999999999999999988 788999999999999999999
Q ss_pred HHHccCCCCCCCCCHHHHHhhcCCCCC
Q 014006 404 LYLIDAIDENGSITSIGRTMAGTSFFA 430 (432)
Q Consensus 404 L~~~g~i~~~~~~t~lG~~~~~l~~~~ 430 (432)
|..+||+|++|++|++|+.|++||++|
T Consensus 390 L~~lgald~~~~lT~~G~~~~~lp~~p 416 (819)
T TIGR01970 390 LQRLGALDAQGRLTAHGKAMAALGCHP 416 (819)
T ss_pred HHHCCCCCCCCCcCHHHHHHHhcCCCH
Confidence 999999999999999999999999987
No 7
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-77 Score=543.20 Aligned_cols=420 Identities=49% Similarity=0.799 Sum_probs=400.7
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeee
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g 82 (432)
+||+|++++++++.+.+++.++++|.|||||||++|++...........+.+++|+|..|.+++.+++.+.....|..+|
T Consensus 45 ~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVG 124 (699)
T KOG0925|consen 45 ELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVG 124 (699)
T ss_pred cCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccchhcc
Confidence 79999999999999999999999999999999999999988766666789999999999999999999999999999999
Q ss_pred eeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccCh
Q 014006 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (432)
Q Consensus 83 ~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~ 162 (432)
|++++++...+++-+.|||.|+|++..++++.+..+++||+||||+|.+.+|.++.+++.+...+|+ .++|.||||++.
T Consensus 125 ysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpd-Lk~vvmSatl~a 203 (699)
T KOG0925|consen 125 YSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPD-LKLVVMSATLDA 203 (699)
T ss_pred ccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCC-ceEEEeecccch
Confidence 9999999999999999999999999999999999999999999999999999999999999999985 999999999999
Q ss_pred HHHHhhccCCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccC
Q 014006 163 EKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDE 242 (432)
Q Consensus 163 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~ 242 (432)
..++.||++++++.+++ .+|++++|......+|+++++..+++++..+.+|.+|||+++.++++..++.+.....++..
T Consensus 204 ~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~ 282 (699)
T KOG0925|consen 204 EKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGP 282 (699)
T ss_pred HHHHHHhCCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999 89999999999999999999999999999999999999999999999999999988777764
Q ss_pred CCCCCeEEEEecCCCCHHHHhccCCCCCCC-----ccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceE
Q 014006 243 GSCMDAVILPLHGSLPPEMQVRVFSPPPPN-----CRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDV 317 (432)
Q Consensus 243 ~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g-----~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~ 317 (432)
+ .....|.++| +.++..+++..... .++|+|+|++++.++.+++|.+|||.|+.+++.|+|+-...++..
T Consensus 283 ~-~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv 357 (699)
T KOG0925|consen 283 Q-VGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLV 357 (699)
T ss_pred c-cCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeee
Confidence 4 4678899999 66777887766532 379999999999999999999999999999999999999999999
Q ss_pred eeecHhhHHHhhcccCCCCCCeEEEecCccchhhcCCCCCCCccccCCchHHHHHHhhCCCCCCccccccCCCCCCHHHH
Q 014006 318 VQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESL 397 (432)
Q Consensus 318 ~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~~~l 397 (432)
.|||+++..||+|||||.+||+||+||+++.+...|.+.+.|||++++|..++|++|.+|+++ +-.|+|+|||.++++
T Consensus 358 ~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~d--lvhfdfmDpPAPEtL 435 (699)
T KOG0925|consen 358 SPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDD--LVHFDFMDPPAPETL 435 (699)
T ss_pred ccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCccc--ccCCcCCCCCChHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHccCCCCCCCCCHHHHHhhcCCCCCC
Q 014006 398 EDALKQLYLIDAIDENGSITSIGRTMAGTSFFAL 431 (432)
Q Consensus 398 ~~~~~~L~~~g~i~~~~~~t~lG~~~~~l~~~~~ 431 (432)
.+|++.|..++++|+||++|++|..|+.||++|-
T Consensus 436 MrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPq 469 (699)
T KOG0925|consen 436 MRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQ 469 (699)
T ss_pred HHHHHHhhhhhhhCCCcccchhhhhhhcCCCChH
Confidence 9999999999999999999999999999999984
No 8
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.7e-76 Score=611.78 Aligned_cols=415 Identities=41% Similarity=0.650 Sum_probs=375.9
Q ss_pred CCCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCee
Q 014006 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (432)
Q Consensus 2 ~~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~ 81 (432)
.+||+++++++|++.+.++++++|+|+|||||||++|.++........+.|++++|+|..+..++.+++++++...|..+
T Consensus 71 ~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~V 150 (1294)
T PRK11131 71 ENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCV 150 (1294)
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhccee
Confidence 37999999999999999999999999999999999999988765544568899999999999999999999999899999
Q ss_pred eeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccC
Q 014006 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (432)
Q Consensus 82 g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~ 161 (432)
||.++++.+...+++|+|+|||+|++.+..++.++++++|||||||+|+++.+++..+++.++..+++ .|+|+||||++
T Consensus 151 GY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpd-lKvILmSATid 229 (1294)
T PRK11131 151 GYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPD-LKVIITSATID 229 (1294)
T ss_pred ceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCC-ceEEEeeCCCC
Confidence 99999998888899999999999999998888999999999999999999999999888888776654 89999999999
Q ss_pred hHHHHhhccCCCeeecCCCCCceeEEeCCCCCc------chHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHH
Q 014006 162 GEKVSKFFSNCPTLNVPGKLYPVEILHSKERPT------SYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLED 235 (432)
Q Consensus 162 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~ 235 (432)
.+.+.++|.+.+++.++++.+|++..|...... +++...+..+..+. ....+++|||+|++++++.+++.|.+
T Consensus 230 ~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~ 308 (1294)
T PRK11131 230 PERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRDTADALNK 308 (1294)
T ss_pred HHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999988764321 23333333333332 45678999999999999999999987
Q ss_pred HHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccc
Q 014006 236 KIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSL 315 (432)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~ 315 (432)
.. .....+.++||+|++++|.++++. .|..+||||||++|+|||||+|++|||+|+.+...||+.+++.++
T Consensus 309 ~~-------~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~L 379 (1294)
T PRK11131 309 LN-------LRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRL 379 (1294)
T ss_pred cC-------CCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccC
Confidence 41 134568999999999999999986 578999999999999999999999999999999999999999999
Q ss_pred eEeeecHhhHHHhhcccCCCCCCeEEEecCccchhhcCCCCCCCccccCCchHHHHHHhhCCCCCCccccccCCCCCCHH
Q 014006 316 DVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSE 395 (432)
Q Consensus 316 ~~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~~ 395 (432)
+..|+|+++|.||+|||||.++|.||+||+++++.. +++++.|||++.+|..++|+++++|+.+ +..|+|++||+.+
T Consensus 380 p~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~-~~~~~~PEIlR~~L~~viL~lk~lgl~d--i~~F~fldpP~~~ 456 (1294)
T PRK11131 380 PIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLS-RPEFTDPEILRTNLASVILQMTALGLGD--IAAFPFVEAPDKR 456 (1294)
T ss_pred CeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHh-hhcccCCccccCCHHHHHHHHHHcCCCC--cceeeCCCCCCHH
Confidence 999999999999999999999999999999999988 9999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHHHccCCCCC-----CCCCHHHHHhhcCCCCC
Q 014006 396 SLEDALKQLYLIDAIDEN-----GSITSIGRTMAGTSFFA 430 (432)
Q Consensus 396 ~l~~~~~~L~~~g~i~~~-----~~~t~lG~~~~~l~~~~ 430 (432)
++..+++.|.++||||.+ +++|++|+.|++||++|
T Consensus 457 ~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldP 496 (1294)
T PRK11131 457 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDP 496 (1294)
T ss_pred HHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCCh
Confidence 999999999999999864 57999999999999997
No 9
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.8e-76 Score=612.19 Aligned_cols=414 Identities=43% Similarity=0.689 Sum_probs=378.7
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeee
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g 82 (432)
+||+++++++|++++.+++.++|+|+|||||||++|.++........++|++++|+|..|..++++++++++..+|..+|
T Consensus 65 ~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VG 144 (1283)
T TIGR01967 65 NLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVG 144 (1283)
T ss_pred CCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEe
Confidence 69999999999999999999999999999999999999987765555689999999999999999999999999999999
Q ss_pred eeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccCh
Q 014006 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (432)
Q Consensus 83 ~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~ 162 (432)
|.++++.+.+.++.|.|+|+|+|++.+..++.+.++++|||||+|+|+++.++++.+++.++..+++ .|+|+||||++.
T Consensus 145 Y~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpd-LKlIlmSATld~ 223 (1283)
T TIGR01967 145 YKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPD-LKIIITSATIDP 223 (1283)
T ss_pred eEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCC-CeEEEEeCCcCH
Confidence 9999999999999999999999999999888999999999999999999999999999999877765 899999999999
Q ss_pred HHHHhhccCCCeeecCCCCCceeEEeCCCCCc------chHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHH
Q 014006 163 EKVSKFFSNCPTLNVPGKLYPVEILHSKERPT------SYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDK 236 (432)
Q Consensus 163 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~ 236 (432)
+.++++|.+.+++.++++.+|++..|...... ++.+.....+..+. ....|++|||+|++++++.+++.|.+.
T Consensus 224 ~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~-~~~~GdILVFLpg~~EI~~l~~~L~~~ 302 (1283)
T TIGR01967 224 ERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELF-AEGPGDILIFLPGEREIRDAAEILRKR 302 (1283)
T ss_pred HHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHH-hhCCCCEEEeCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999988654321 23333333343333 345689999999999999999999864
Q ss_pred HhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccce
Q 014006 237 IRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLD 316 (432)
Q Consensus 237 ~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~ 316 (432)
. ..++.+.++||+|++++|.++++.+ +..+||||||++|+|||||+|++|||+|+++...||+.+++..++
T Consensus 303 ~-------~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~ 373 (1283)
T TIGR01967 303 N-------LRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLP 373 (1283)
T ss_pred C-------CCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccC
Confidence 1 1357799999999999999998875 347999999999999999999999999999999999999999999
Q ss_pred EeeecHhhHHHhhcccCCCCCCeEEEecCccchhhcCCCCCCCccccCCchHHHHHHhhCCCCCCccccccCCCCCCHHH
Q 014006 317 VVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSES 396 (432)
Q Consensus 317 ~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~~~ 396 (432)
..|+|+++|.||+|||||.++|.||+||+++++.. +++++.|||++.+|..++|+++++|+.+ +..|+|++||+.++
T Consensus 374 ~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~-~~~~~~PEIlR~~L~~viL~l~~lg~~d--i~~f~fldpP~~~~ 450 (1283)
T TIGR01967 374 IEPISQASANQRKGRCGRVAPGICIRLYSEEDFNS-RPEFTDPEILRTNLASVILQMLALRLGD--IAAFPFIEAPDPRA 450 (1283)
T ss_pred CccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHh-hhhccCcccccccHHHHHHHHHhcCCCC--cccccCCCCCCHHH
Confidence 99999999999999999999999999999999988 9999999999999999999999999988 89999999999999
Q ss_pred HHHHHHHHHHccCCCCCC---CCCHHHHHhhcCCCCC
Q 014006 397 LEDALKQLYLIDAIDENG---SITSIGRTMAGTSFFA 430 (432)
Q Consensus 397 l~~~~~~L~~~g~i~~~~---~~t~lG~~~~~l~~~~ 430 (432)
+..|++.|.++||||++| ++|++|+.|++||++|
T Consensus 451 i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldP 487 (1283)
T TIGR01967 451 IRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDP 487 (1283)
T ss_pred HHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCCh
Confidence 999999999999999998 7999999999999997
No 10
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-73 Score=540.53 Aligned_cols=425 Identities=46% Similarity=0.773 Sum_probs=394.8
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCC-----CcEEEecccchhhhHHHHHHHHHHhCCcc
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTK-----SGIIGVTQPRRVAAVSVARRVAQELGVRL 77 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~-----~~~vl~~~P~~~l~~q~~~~~~~~~~~~~ 77 (432)
+||+..-.++|+++|..+..+||+|.|||||||++|+++....+.. ++-+-+++|+|..|..++++++.+++. .
T Consensus 254 ~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~ 332 (1172)
T KOG0926|consen 254 DLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-L 332 (1172)
T ss_pred cCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-C
Confidence 6999999999999999999999999999999999999999876533 357889999999999999999999988 8
Q ss_pred CCeeeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC--------
Q 014006 78 GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-------- 149 (432)
Q Consensus 78 ~~~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-------- 149 (432)
+..+||.++++....+.+.|.|+|.|.|++.+.++..+..+++||+||||+|.+++|.+..++.++...+.+
T Consensus 333 ~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~ 412 (1172)
T KOG0926|consen 333 GSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQI 412 (1172)
T ss_pred ccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999886532
Q ss_pred -CcEEEEEecccChHHHH---hhcc-CCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 014006 150 -KLKILITSATLDGEKVS---KFFS-NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (432)
Q Consensus 150 -~~~ii~~SAT~~~~~~~---~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~ 224 (432)
..++|+||||+-..++. .+|. -+|++.++.+.||+.++|......+|+..++.....++++.++|.+|||+.++.
T Consensus 413 kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQq 492 (1172)
T KOG0926|consen 413 KPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQ 492 (1172)
T ss_pred CceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChH
Confidence 46899999999655443 4554 377999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh------------------------------------------------------------------
Q 014006 225 DIEKLVSKLEDKIR------------------------------------------------------------------ 238 (432)
Q Consensus 225 ~~~~~~~~L~~~~~------------------------------------------------------------------ 238 (432)
++.++++.|++.+.
T Consensus 493 EV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~ 572 (1172)
T KOG0926|consen 493 EVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALA 572 (1172)
T ss_pred HHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccc
Confidence 99999999998733
Q ss_pred -----------------------hccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEE
Q 014006 239 -----------------------SLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYV 295 (432)
Q Consensus 239 -----------------------~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~V 295 (432)
..+...+..+-|.++++-|+.+.+.++++..+.|.+-++||||++|.+++||+|+||
T Consensus 573 De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYV 652 (1172)
T KOG0926|consen 573 DENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYV 652 (1172)
T ss_pred cccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEE
Confidence 000011335679999999999999999999999999999999999999999999999
Q ss_pred EeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEecCccchhhcCCCCCCCccccCCchHHHHHHhh
Q 014006 296 IDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKS 375 (432)
Q Consensus 296 I~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~l~l~~ 375 (432)
||+|..+.+.||..+|+..+...|+|+++.-||+|||||.++|+||+||+..-|.+.+.++..|||++.+.+.++|++++
T Consensus 653 VD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKs 732 (1172)
T KOG0926|consen 653 VDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKS 732 (1172)
T ss_pred EeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CCCCCCccccccCCCCCCHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhcCCCCC
Q 014006 376 LDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSIGRTMAGTSFFA 430 (432)
Q Consensus 376 ~~~~~~~~~~~~~~~~p~~~~l~~~~~~L~~~g~i~~~~~~t~lG~~~~~l~~~~ 430 (432)
++|.+ +..|+|+.||....++.|...|..+||+|.+|.+|++|+.|+.+|++|
T Consensus 733 MnI~k--VvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsP 785 (1172)
T KOG0926|consen 733 MNIDK--VVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSP 785 (1172)
T ss_pred cCccc--eecCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccCh
Confidence 99999 999999999999999999999999999999999999999999999987
No 11
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=1.5e-70 Score=547.69 Aligned_cols=424 Identities=42% Similarity=0.664 Sum_probs=381.3
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCC--CCCcEEEecccchhhhHHHHHHHHHHhCCccCCe
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGY--TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~--~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~ 80 (432)
+||+|+.+++|++++.++++++|+|.|||||||++|++++.... ....+++|++|+|..|..++++++++.+...|..
T Consensus 171 ~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~ 250 (924)
T KOG0920|consen 171 SLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEE 250 (924)
T ss_pred hCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCe
Confidence 79999999999999999999999999999999999999987632 2456899999999999999999999999999999
Q ss_pred eeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 81 ~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
+||.++.+......+.+.|||.|.|++.+..++.+.+++++|+||+|+|..+.|+++-+++.++..+|. .++|+||||+
T Consensus 251 VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~-LkvILMSAT~ 329 (924)
T KOG0920|consen 251 VGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPD-LKVILMSATL 329 (924)
T ss_pred eeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCC-ceEEEeeeec
Confidence 999999999998889999999999999999999999999999999999999999999999999999976 9999999999
Q ss_pred ChHHHHhhccCCCeeecCCCCCceeEEeCCCC-----------------Ccc--------------hHHHHHHHHHHHHh
Q 014006 161 DGEKVSKFFSNCPTLNVPGKLYPVEILHSKER-----------------PTS--------------YLESALKTAIDIHV 209 (432)
Q Consensus 161 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----------------~~~--------------~~~~~~~~~~~~~~ 209 (432)
+.+.+.+||++++++.++++.+|+..+|.++. ... ..+.....+..++.
T Consensus 330 dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~ 409 (924)
T KOG0920|consen 330 DAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDE 409 (924)
T ss_pred chHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhccc
Confidence 99999999999999999999999987664321 000 01112223334445
Q ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCccccccc
Q 014006 210 REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV 289 (432)
Q Consensus 210 ~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi 289 (432)
....|.+|||+|+..++..+...|........ ..++.+.++||.|+.++++.++.....|.++||+||+++|.+|+|
T Consensus 410 ~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~---~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITI 486 (924)
T KOG0920|consen 410 REFEGAILVFLPGWEEILQLKELLEVNLPFAD---SLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITI 486 (924)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHhhhcccccc---ccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccc
Confidence 56688999999999999999999976432211 146889999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEecCccchhhcCCCCCCCccccCCchHH
Q 014006 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGS 369 (432)
Q Consensus 290 ~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~ 369 (432)
+||.+|||+|+.|+..||+..++..+...|+|+++..||+|||||.++|.||+||++..++..+..+++|||+|.+|.+.
T Consensus 487 dDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l 566 (924)
T KOG0920|consen 487 DDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEEL 566 (924)
T ss_pred cCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhcccccCChHHHhChHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999555599999999999999
Q ss_pred HHHHhhCCCCCCccccccCCCCCCHHHHHHHHHHHHHccCCCCCCCCCHHHHHhhcCCCCC
Q 014006 370 VLYLKSLDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSIGRTMAGTSFFA 430 (432)
Q Consensus 370 ~l~l~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~L~~~g~i~~~~~~t~lG~~~~~l~~~~ 430 (432)
+|++|.++...+.-.....++||+.+++..|+..|.++||++.+.++|++|++++.||+++
T Consensus 567 ~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~ 627 (924)
T KOG0920|consen 567 CLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDV 627 (924)
T ss_pred hheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCcc
Confidence 9999999888733233377899999999999999999999999999999999999999987
No 12
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.2e-57 Score=452.71 Aligned_cols=383 Identities=21% Similarity=0.300 Sum_probs=289.8
Q ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhc-------------C-CCCCcEEEecccchhhhHHHHHHHHHHh
Q 014006 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH-------------G-YTKSGIIGVTQPRRVAAVSVARRVAQEL 73 (432)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~-------------~-~~~~~~vl~~~P~~~l~~q~~~~~~~~~ 73 (432)
..|+++++.+.+|++++++|+||||||+++|+++... . ...+..+++++|+++++.|+..++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 3577899999999999999999999999998776532 0 1234689999999999999999988776
Q ss_pred CCcc------CCeeeeeeeec-ccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhh
Q 014006 74 GVRL------GEEVGYAIRFE-DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (432)
Q Consensus 74 ~~~~------~~~~g~~~~~~-~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~ 146 (432)
+... ....|...... .......+++++|++. ....++++++|||||||++....+.++.+++.....
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L------~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~ 320 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL------TLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK 320 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc------cccccccCCEEEccccccCccchhHHHHHHHHhhhh
Confidence 6421 11222111100 1111246799999752 223688999999999999999998888877655432
Q ss_pred hcCCcEEEEEecccCh--HHHHhhccCCCeeecCCCC-CceeEEeCCCCC-----cchHHHHHHHHHHHHh---cCCCCC
Q 014006 147 RASKLKILITSATLDG--EKVSKFFSNCPTLNVPGKL-YPVEILHSKERP-----TSYLESALKTAIDIHV---REPEGD 215 (432)
Q Consensus 147 ~~~~~~ii~~SAT~~~--~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~ 215 (432)
..|+++||||++. +.+++|++++..+.++++. +|++..|..... ..+.......+...+. ...+++
T Consensus 321 ---~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~ 397 (675)
T PHA02653 321 ---IRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSS 397 (675)
T ss_pred ---cCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCc
Confidence 2589999999965 4588999999999999874 899888764331 1222222122222221 234579
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCC-CCCccEEEEeecCcccccccCCeEE
Q 014006 216 VLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP-PPNCRRFIVSTNIAETSLTVDGVVY 294 (432)
Q Consensus 216 ~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f-~~g~~~ilvaT~~~~~Gidi~~v~~ 294 (432)
+||||||+++++.+++.|.+.. +++.+.++||+|++.+ +.+++| ++|+.+||||||++|+|||||+|++
T Consensus 398 iLVFlpg~~ei~~l~~~L~~~~--------~~~~v~~LHG~Lsq~e--q~l~~ff~~gk~kILVATdIAERGIDIp~V~~ 467 (675)
T PHA02653 398 GIVFVASVSQCEEYKKYLEKRL--------PIYDFYIIHGKVPNID--EILEKVYSSKNPSIIISTPYLESSVTIRNATH 467 (675)
T ss_pred EEEEECcHHHHHHHHHHHHhhc--------CCceEEeccCCcCHHH--HHHHHHhccCceeEEeccChhhccccccCeeE
Confidence 9999999999999999998741 3688999999999753 445555 6899999999999999999999999
Q ss_pred EEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEecCccchhhcCCCCCCCccccCCchHHHHHHh
Q 014006 295 VIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLK 374 (432)
Q Consensus 295 VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~l~l~ 374 (432)
|||+|+.+.+. +..+. ..|+|.++|.||+|||||.++|.||+||++++.. +++++...+|..++|+++
T Consensus 468 VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~~------pI~ri~~~~L~~~vL~lk 535 (675)
T PHA02653 468 VYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLLK------PIKRIDSEFLHNYILYAK 535 (675)
T ss_pred EEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHhH------HHHHHhHHHHHHHHHHHH
Confidence 99999876553 33332 4689999999999999999999999999988741 133333344899999999
Q ss_pred hCCCCCCccccccCCCCCCHHHHHHHHHHHHHccCCCCCCCCCHH--HHHhhcC
Q 014006 375 SLDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSI--GRTMAGT 426 (432)
Q Consensus 375 ~~~~~~~~~~~~~~~~~p~~~~l~~~~~~L~~~g~i~~~~~~t~l--G~~~~~l 426 (432)
.+|++. ..+.|+|||+.+++..|++.|..+|++++ ++|.+ |+.++-+
T Consensus 536 ~~g~~~---~~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~ 584 (675)
T PHA02653 536 YFNLTL---PEDLFVIPSNLDRLRKTEEYIDSFNISIE--KWYEILSNYYVNML 584 (675)
T ss_pred HcCCCC---cccccCCCCCHHHHHHHHHHHHHcCCCch--hhhhhhccccHHHH
Confidence 999955 34559999999999999999999998754 89999 8877643
No 13
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-50 Score=381.27 Aligned_cols=313 Identities=21% Similarity=0.224 Sum_probs=239.7
Q ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhcC------CCCCcEEEecccchhhhHHHHHHHHHHhCCc---
Q 014006 8 QYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHG------YTKSGIIGVTQPRRVAAVSVARRVAQELGVR--- 76 (432)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~~------~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~--- 76 (432)
+.|...|+.+..|++++..|.|||||| +++|.+..... ...+.+++++.|||+||.|+.+.+.++....
T Consensus 116 pIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~ 195 (519)
T KOG0331|consen 116 PIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLR 195 (519)
T ss_pred hhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCcc
Confidence 567778999999999999999999999 66776665543 2346799999999999999988765443322
Q ss_pred cCCeeeeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhh-cCCcE
Q 014006 77 LGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKLK 152 (432)
Q Consensus 77 ~~~~~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~-~~~~~ 152 (432)
.....|...... .......+|+++|||+|.+++.... .+++++++|+|||| +|++++|..+ ++.++... +...|
T Consensus 196 ~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD-rMldmGFe~q-I~~Il~~i~~~~rQ 273 (519)
T KOG0331|consen 196 STCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD-RMLDMGFEPQ-IRKILSQIPRPDRQ 273 (519)
T ss_pred EEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-hhhccccHHH-HHHHHHhcCCCccc
Confidence 222334222111 2223568999999999999996555 89999999999999 9999997776 66666655 44458
Q ss_pred EEEEecccChHH---HHhhccCCCeeecCCCC-----CceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 014006 153 ILITSATLDGEK---VSKFFSNCPTLNVPGKL-----YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (432)
Q Consensus 153 ii~~SAT~~~~~---~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~ 224 (432)
++++|||+|.+. ..+|+.++..+.+.... ..+..+..... .......+..++..+....++++||||+|++
T Consensus 274 tlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr 352 (519)
T KOG0331|consen 274 TLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKR 352 (519)
T ss_pred EEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchh
Confidence 999999999865 44677655444444321 11111111111 1112233333344343567789999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccce
Q 014006 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR 304 (432)
Q Consensus 225 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~ 304 (432)
.|++++..++.. ++++..+||+.++++|..+++.|++|+..||||||+++||+|+|+|++||||++|.
T Consensus 353 ~~~~l~~~l~~~----------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~-- 420 (519)
T KOG0331|consen 353 TCDELARNLRRK----------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPN-- 420 (519)
T ss_pred hHHHHHHHHHhc----------CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCC--
Confidence 999999999873 68899999999999999999999999999999999999999999999999999987
Q ss_pred eecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 305 QYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 305 ~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
+.++|+||+||+||. +.|.++.+++..++..
T Consensus 421 ----------------~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 421 ----------------NVEDYVHRIGRTGRAGKKGTAITFFTSDNAKL 452 (519)
T ss_pred ----------------CHHHHHhhcCccccCCCCceEEEEEeHHHHHH
Confidence 777999999999997 7899999999887754
No 14
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-50 Score=356.22 Aligned_cols=311 Identities=20% Similarity=0.236 Sum_probs=239.8
Q ss_pred hhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhc-CCCCCcEEEecccchhhhHHHHHHHHHH---hCCccCCee
Q 014006 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQE---LGVRLGEEV 81 (432)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~-~~~~~~~vl~~~P~~~l~~q~~~~~~~~---~~~~~~~~~ 81 (432)
...|.+.++.+.+|+++|..|.|||||| +++.+++..+ ...+...++++.|+|+||.|+...+... .|..+...+
T Consensus 85 T~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lv 164 (476)
T KOG0330|consen 85 TKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLV 164 (476)
T ss_pred chhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEe
Confidence 3578899999999999999999999999 6665665544 3344468999999999999998876332 334444455
Q ss_pred eeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC--CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 82 GYAIRFE--DRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 82 g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~--~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
|+..... .....+++|+|+|||+|.+++.+.. .+.+++++|+|||| |.++++|... +..+++..|.+.|.+++|
T Consensus 165 GG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlLd~dF~~~-ld~ILk~ip~erqt~Lfs 242 (476)
T KOG0330|consen 165 GGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLLDMDFEEE-LDYILKVIPRERQTFLFS 242 (476)
T ss_pred cCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhhhhhhHHH-HHHHHHhcCccceEEEEE
Confidence 5322211 2234789999999999999997544 88999999999999 9999999877 788888888889999999
Q ss_pred cccChHH--HH-hhccCCCeeecCCCCCc---eeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHH
Q 014006 158 ATLDGEK--VS-KFFSNCPTLNVPGKLYP---VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVS 231 (432)
Q Consensus 158 AT~~~~~--~~-~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~ 231 (432)
||++.+. +. .-+.++..+.+..+... +...|...+... .+.. +..+.....++.+||||+|...++.++-
T Consensus 243 ATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~-K~~y---LV~ll~e~~g~s~iVF~~t~~tt~~la~ 318 (476)
T KOG0330|consen 243 ATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKD-KDTY---LVYLLNELAGNSVIVFCNTCNTTRFLAL 318 (476)
T ss_pred eecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccc-cchh---HHHHHHhhcCCcEEEEEeccchHHHHHH
Confidence 9998753 33 23344555554443221 222222222111 1111 2222333456899999999999999999
Q ss_pred HHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCC
Q 014006 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (432)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~ 311 (432)
.|+. .++.+.++||.|+++.|...++.|++|.+.||||||+++||+|+|.|++|||||+|.
T Consensus 319 ~L~~----------lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~--------- 379 (476)
T KOG0330|consen 319 LLRN----------LGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPT--------- 379 (476)
T ss_pred HHHh----------cCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCC---------
Confidence 9987 599999999999999999999999999999999999999999999999999999977
Q ss_pred CccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 312 ~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
+..+|+||+||+||. ++|.++.|++.-+.+.
T Consensus 380 ---------~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~ 411 (476)
T KOG0330|consen 380 ---------HSKDYIHRVGRTARAGRSGKAITLVTQYDVEL 411 (476)
T ss_pred ---------cHHHHHHHcccccccCCCcceEEEEehhhhHH
Confidence 455999999999999 7899999999855543
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.2e-47 Score=394.42 Aligned_cols=406 Identities=19% Similarity=0.215 Sum_probs=274.8
Q ss_pred hhhhHHHHHHH-HhcCCEEEEEcCCCCCHHHHH-HHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHh--CCccCCee
Q 014006 6 ILQYEETIVET-VEQNPVVVVIGETGSGKSTQL-SQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL--GVRLGEEV 81 (432)
Q Consensus 6 ~~~~q~~i~~~-i~~~~~~ii~apTGsGKT~~~-~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~--~~~~~~~~ 81 (432)
+++.|.++++. +.+|++++++||||||||.++ .+++... ..+.++++++|+++|+.|+++++.+.. +..++...
T Consensus 24 l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l--~~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~t 101 (737)
T PRK02362 24 LYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAI--ARGGKALYIVPLRALASEKFEEFERFEELGVRVGIST 101 (737)
T ss_pred CCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHH--hcCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 67899999987 889999999999999999443 3333333 246789999999999999999987542 44444444
Q ss_pred eeeeeecccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHH---HHHHHHHHHhhhcCCcEEEEEe
Q 014006 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDI---LLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 82 g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~---~~~~l~~~~~~~~~~~~ii~~S 157 (432)
|... .........+|+|+||+++..++.+.. +++++++||+||+| ...+.++ +..++.++....+ +.|+|++|
T Consensus 102 Gd~~-~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H-~l~d~~rg~~le~il~rl~~~~~-~~qii~lS 178 (737)
T PRK02362 102 GDYD-SRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVH-LIDSANRGPTLEVTLAKLRRLNP-DLQVVALS 178 (737)
T ss_pred CCcC-ccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcc-ccCCCcchHHHHHHHHHHHhcCC-CCcEEEEc
Confidence 4221 111222457999999999988876543 78899999999999 4444332 3333444444333 58999999
Q ss_pred cccC-hHHHHhhccCCCeeecCCCCCceeEEeC-------CCCCc----chHHHHHHHHHHHHhcCCCCCEEEEeCCHHH
Q 014006 158 ATLD-GEKVSKFFSNCPTLNVPGKLYPVEILHS-------KERPT----SYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (432)
Q Consensus 158 AT~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~----~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~ 225 (432)
||++ .+.+++|++. ..+....++.++..... ..... .........+.... ..++++||||+|+++
T Consensus 179 ATl~n~~~la~wl~~-~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~ 255 (737)
T PRK02362 179 ATIGNADELADWLDA-ELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTL--EEGGQCLVFVSSRRN 255 (737)
T ss_pred ccCCCHHHHHHHhCC-CcccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHH--HcCCCeEEEEeCHHH
Confidence 9994 5779999853 33333333333332110 00000 00012222333322 356799999999999
Q ss_pred HHHHHHHHHHHHhhc-------------------cCC-------CCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEe
Q 014006 226 IEKLVSKLEDKIRSL-------------------DEG-------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVS 279 (432)
Q Consensus 226 ~~~~~~~L~~~~~~~-------------------~~~-------~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilva 279 (432)
|+.++..|....... ... .+...++++|||||++++|..+++.|++|.++||||
T Consensus 256 ~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLva 335 (737)
T PRK02362 256 AEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISS 335 (737)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEe
Confidence 999999987653210 000 011246899999999999999999999999999999
Q ss_pred ecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC---CCeEEEecCccc-h----hh
Q 014006 280 TNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTV-Y----HD 351 (432)
Q Consensus 280 T~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~---~G~~~~l~~~~~-~----~~ 351 (432)
|+++++|+|+|++++||+. ...||+..+ ..|.+..+|+||+|||||.+ .|.++.+....+ . ..
T Consensus 336 T~tla~GvnlPa~~VVI~~----~~~yd~~~g-----~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~ 406 (737)
T PRK02362 336 TPTLAAGLNLPARRVIIRD----YRRYDGGAG-----MQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFER 406 (737)
T ss_pred chhhhhhcCCCceEEEEec----ceeecCCCC-----ceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHH
Confidence 9999999999999999963 234554432 25789999999999999983 499999986532 1 22
Q ss_pred cCCCCCCCcccc------CCchHHHHHHhhCCCCCCc--cccc---cCCCCC------CHHHHHHHHHHHHHccCCCCCC
Q 014006 352 EFLDVTVPEIQR------SSLAGSVLYLKSLDLSDIN--VLKF---DFLDPP------SSESLEDALKQLYLIDAIDENG 414 (432)
Q Consensus 352 ~~~~~~~~~i~~------~~l~~~~l~l~~~~~~~~~--~~~~---~~~~~p------~~~~l~~~~~~L~~~g~i~~~~ 414 (432)
+... .|+-.. ..+...++.....+..... +..| .|+..+ ..+.++++++.|.+.|+|+.++
T Consensus 407 -~l~~-~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~ 484 (737)
T PRK02362 407 -YIWA-DPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDG 484 (737)
T ss_pred -HHhC-CCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecC
Confidence 2111 122111 2355666666665543210 1111 333222 2345789999999999998776
Q ss_pred ---CCCHHHHHhhcCCCCC
Q 014006 415 ---SITSIGRTMAGTSFFA 430 (432)
Q Consensus 415 ---~~t~lG~~~~~l~~~~ 430 (432)
.+|++|+++++++++|
T Consensus 485 ~~~~~t~lG~~~s~~~l~~ 503 (737)
T PRK02362 485 ETLEATELGHLVSRLYIDP 503 (737)
T ss_pred CeEeEChHHHHHHHhcCCH
Confidence 4999999999999987
No 16
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-48 Score=381.11 Aligned_cols=309 Identities=21% Similarity=0.282 Sum_probs=242.6
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcC--CCCCcE-EEecccchhhhHHHHHHHHHHhC----Ccc
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG--YTKSGI-IGVTQPRRVAAVSVARRVAQELG----VRL 77 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~--~~~~~~-vl~~~P~~~l~~q~~~~~~~~~~----~~~ 77 (432)
..+.|...++.+..|+++++.|+|||||| +++.+++.... ...... ++++.|||+||.|+++.+.+... ..+
T Consensus 52 pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~ 131 (513)
T COG0513 52 PTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRV 131 (513)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccE
Confidence 35789999999999999999999999999 55555555544 222222 89999999999999988644432 333
Q ss_pred CCeeeeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEE
Q 014006 78 GEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (432)
Q Consensus 78 ~~~~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii 154 (432)
...+|+..... ......++|+|+|||++++++.... .++++.++|+|||| ++++++|... +..+....|.+.|++
T Consensus 132 ~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rmLd~Gf~~~-i~~I~~~~p~~~qtl 209 (513)
T COG0513 132 AVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RMLDMGFIDD-IEKILKALPPDRQTL 209 (513)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hhhcCCCHHH-HHHHHHhCCcccEEE
Confidence 44444321111 1112359999999999999996664 89999999999999 8999988887 677777777679999
Q ss_pred EEecccChHH---HHhhccCCCeeecCCC-----CCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHH
Q 014006 155 ITSATLDGEK---VSKFFSNCPTLNVPGK-----LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDI 226 (432)
Q Consensus 155 ~~SAT~~~~~---~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~ 226 (432)
+||||++... ...++.++..+.+... ...++..+....... .....+..++.....+++||||+|+..+
T Consensus 210 lfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~---~k~~~L~~ll~~~~~~~~IVF~~tk~~~ 286 (513)
T COG0513 210 LFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE---EKLELLLKLLKDEDEGRVIVFVRTKRLV 286 (513)
T ss_pred EEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCcHHHH
Confidence 9999998843 3456666666666522 123333333322222 3555666666666667899999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceee
Q 014006 227 EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY 306 (432)
Q Consensus 227 ~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~ 306 (432)
+.++..|.. .++.+..+||+|++++|.++++.|++|..+||||||+++||||||+|++|||||+|.
T Consensus 287 ~~l~~~l~~----------~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~---- 352 (513)
T COG0513 287 EELAESLRK----------RGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPL---- 352 (513)
T ss_pred HHHHHHHHH----------CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCC----
Confidence 999999988 489999999999999999999999999999999999999999999999999999875
Q ss_pred cCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCcc
Q 014006 307 NPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (432)
Q Consensus 307 ~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~ 347 (432)
+.+.|+||+||+||. ..|.++.|+++.
T Consensus 353 --------------~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 353 --------------DPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred --------------CHHHheeccCccccCCCCCeEEEEeCcH
Confidence 667999999999999 789999999864
No 17
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.2e-47 Score=393.77 Aligned_cols=410 Identities=16% Similarity=0.159 Sum_probs=270.1
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHh--CCccCCee
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL--GVRLGEEV 81 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~--~~~~~~~~ 81 (432)
+.++++|.++++.+.+|++++++||||||||.++...+.... ..+.+++++.|+++|+.|+++.+.+.. +..++..+
T Consensus 21 ~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l-~~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~ 99 (674)
T PRK01172 21 FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETF-LAGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISI 99 (674)
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHH-HhCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 457899999999999999999999999999955443333221 235688899999999999999887543 33333333
Q ss_pred eeeeeecccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHH---HHHHHHHHHHhhhcCCcEEEEEe
Q 014006 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTD---ILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 82 g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~---~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
|... .........+|+++|||++..++...+ .+.++++||+||+|+ ..+.+ .+..++..+.... .+.|+|++|
T Consensus 100 G~~~-~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~-l~d~~rg~~le~ll~~~~~~~-~~~riI~lS 176 (674)
T PRK01172 100 GDYD-DPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHI-IGDEDRGPTLETVLSSARYVN-PDARILALS 176 (674)
T ss_pred CCCC-CChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchh-ccCCCccHHHHHHHHHHHhcC-cCCcEEEEe
Confidence 3111 111112467999999999988876655 689999999999994 33322 2333344433333 358999999
Q ss_pred ccc-ChHHHHhhccCCCeeecCCCCCceeEEeC--CCCCc---c-hHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHH
Q 014006 158 ATL-DGEKVSKFFSNCPTLNVPGKLYPVEILHS--KERPT---S-YLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (432)
Q Consensus 158 AT~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~---~-~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~ 230 (432)
||+ +.+.+++|++ ...+....++.|+..... ..... . ........+... ...++++||||+|+++++.++
T Consensus 177 ATl~n~~~la~wl~-~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~vLVF~~sr~~~~~~a 253 (674)
T PRK01172 177 ATVSNANELAQWLN-ASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKET--VNDGGQVLVFVSSRKNAEDYA 253 (674)
T ss_pred CccCCHHHHHHHhC-CCccCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHH--HhCCCcEEEEeccHHHHHHHH
Confidence 999 5577999985 444555566666553221 10000 0 000011111111 235679999999999999999
Q ss_pred HHHHHHHhhccCC---------------CCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEE
Q 014006 231 SKLEDKIRSLDEG---------------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYV 295 (432)
Q Consensus 231 ~~L~~~~~~~~~~---------------~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~V 295 (432)
..|.+........ .....++.+|||+|++++|..+++.|++|.++|||||+++++|+|+|+..+|
T Consensus 254 ~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VI 333 (674)
T PRK01172 254 EMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVI 333 (674)
T ss_pred HHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEE
Confidence 9998754321100 0012358899999999999999999999999999999999999999988777
Q ss_pred EeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC---CCeEEEecCccc-hh---hcCCCCCCCc---cccC-
Q 014006 296 IDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTV-YH---DEFLDVTVPE---IQRS- 364 (432)
Q Consensus 296 I~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~---~G~~~~l~~~~~-~~---~~~~~~~~~~---i~~~- 364 (432)
|+ |.+ .|+. ....++|..+|.||+|||||.+ .|.++.+....+ ++ +.+...+.|- +...
T Consensus 334 I~-~~~---~~~~------~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~ 403 (674)
T PRK01172 334 VR-DIT---RYGN------GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQR 403 (674)
T ss_pred Ec-Cce---EeCC------CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcc
Confidence 64 332 2322 1234689999999999999984 677777754322 22 2122222221 1111
Q ss_pred CchHHHHHHhhCCCCC--Cccccc---cCC--CCCC---HHHHHHHHHHHHHccCCCCCC--CCCHHHHHhhcCCCCC
Q 014006 365 SLAGSVLYLKSLDLSD--INVLKF---DFL--DPPS---SESLEDALKQLYLIDAIDENG--SITSIGRTMAGTSFFA 430 (432)
Q Consensus 365 ~l~~~~l~l~~~~~~~--~~~~~~---~~~--~~p~---~~~l~~~~~~L~~~g~i~~~~--~~t~lG~~~~~l~~~~ 430 (432)
.+...++.....+... ..+..| .|+ ..++ .+.++++++.|.+.|+|+.++ .+|++|++++++|++|
T Consensus 404 ~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~ 481 (674)
T PRK01172 404 KVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDP 481 (674)
T ss_pred cHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCH
Confidence 1222244444444421 002222 334 3222 467899999999999998654 6899999999999987
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.3e-47 Score=376.00 Aligned_cols=309 Identities=19% Similarity=0.245 Sum_probs=235.5
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCC-CCCcEEEecccchhhhHHHHHHHHHHhC----CccCC
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELG----VRLGE 79 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~-~~~~~vl~~~P~~~l~~q~~~~~~~~~~----~~~~~ 79 (432)
.+++|+++++.+.+|++++++|||||||| +++.+++..... ....++++++||++|+.|+++.+..... ..+..
T Consensus 27 ~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~ 106 (460)
T PRK11776 27 MTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLT 106 (460)
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 46789999999999999999999999999 444445444332 2245789999999999999988765432 33333
Q ss_pred eeeeeeeec---ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEE
Q 014006 80 EVGYAIRFE---DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (432)
Q Consensus 80 ~~g~~~~~~---~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~ 155 (432)
..|. .... ......++|+|+|||++.+++.... .+.++++||+|||| ++++.++... +..++...+...|+++
T Consensus 107 ~~Gg-~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~~g~~~~-l~~i~~~~~~~~q~ll 183 (460)
T PRK11776 107 LCGG-VPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLDMGFQDA-IDAIIRQAPARRQTLL 183 (460)
T ss_pred EECC-CChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHhCcCcHHH-HHHHHHhCCcccEEEE
Confidence 3332 1111 1123568999999999999886554 78999999999999 6777777665 5667777777789999
Q ss_pred EecccChHH---HHhhccCCCeeecCCC--CCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHH
Q 014006 156 TSATLDGEK---VSKFFSNCPTLNVPGK--LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (432)
Q Consensus 156 ~SAT~~~~~---~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~ 230 (432)
+|||++... ...++.++..+.+... ...++..+......+ ....+..+.....++++||||+|++.++.++
T Consensus 184 ~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~----k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~ 259 (460)
T PRK11776 184 FSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDE----RLPALQRLLLHHQPESCVVFCNTKKECQEVA 259 (460)
T ss_pred EEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHH----HHHHHHHHHHhcCCCceEEEECCHHHHHHHH
Confidence 999997643 3344555544544332 122333332222222 3333444444556679999999999999999
Q ss_pred HHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCC
Q 014006 231 SKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSS 310 (432)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~ 310 (432)
+.|.+ .++.+..+||+|++++|..+++.|++|..+|||||+++++|+|+|++++||++|+|.
T Consensus 260 ~~L~~----------~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~-------- 321 (460)
T PRK11776 260 DALNA----------QGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELAR-------- 321 (460)
T ss_pred HHHHh----------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCC--------
Confidence 99987 478899999999999999999999999999999999999999999999999999876
Q ss_pred CCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccch
Q 014006 311 GMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (432)
Q Consensus 311 ~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~ 349 (432)
+..+|+||+||+||. +.|.||.++++.+.
T Consensus 322 ----------~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 322 ----------DPEVHVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred ----------CHhHhhhhcccccCCCCcceEEEEEchhHH
Confidence 667999999999999 68999999988754
No 19
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.2e-47 Score=377.85 Aligned_cols=313 Identities=21% Similarity=0.241 Sum_probs=226.8
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhcC-----CCCCcEEEecccchhhhHHHHHHHHHHhC---C
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHG-----YTKSGIIGVTQPRRVAAVSVARRVAQELG---V 75 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~~-----~~~~~~vl~~~P~~~l~~q~~~~~~~~~~---~ 75 (432)
.+++|.++++.+.+|++++++|||||||| +++|.+..... ...+..+++++||++||.|+.+.+.++.. .
T Consensus 153 pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i 232 (545)
T PTZ00110 153 PTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKI 232 (545)
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCc
Confidence 46789999999999999999999999999 34554443221 22456899999999999999887755432 2
Q ss_pred ccCCeeeeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcE
Q 014006 76 RLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (432)
Q Consensus 76 ~~~~~~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (432)
......|...... ......++|+|+||++|.+++.... .+.++++||||||| ++++.++... ++.++...+...|
T Consensus 233 ~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd-~mld~gf~~~-i~~il~~~~~~~q 310 (545)
T PTZ00110 233 RNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD-RMLDMGFEPQ-IRKIVSQIRPDRQ 310 (545)
T ss_pred cEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH-hhhhcchHHH-HHHHHHhCCCCCe
Confidence 2222222111111 1123467999999999999986554 78999999999999 7888887665 5555555555689
Q ss_pred EEEEecccChHH--HHh-hccCCC-eeecCCCC----CceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 014006 153 ILITSATLDGEK--VSK-FFSNCP-TLNVPGKL----YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (432)
Q Consensus 153 ii~~SAT~~~~~--~~~-~~~~~~-~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~ 224 (432)
++++|||++.+. +.+ ++...+ .+.+.... ..+...+......+. ...+..++.... ...+++||||+|++
T Consensus 311 ~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k-~~~L~~ll~~~~-~~~~k~LIF~~t~~ 388 (545)
T PTZ00110 311 TLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEK-RGKLKMLLQRIM-RDGDKILIFVETKK 388 (545)
T ss_pred EEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhH-HHHHHHHHHHhc-ccCCeEEEEecChH
Confidence 999999998753 333 343222 22221110 111111111111111 111222222111 15679999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccce
Q 014006 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR 304 (432)
Q Consensus 225 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~ 304 (432)
.|+.+++.|.. .++.+..+||++++++|..+++.|++|+.+|||||+++++|||+|+|++||++|+|.
T Consensus 389 ~a~~l~~~L~~----------~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~-- 456 (545)
T PTZ00110 389 GADFLTKELRL----------DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPN-- 456 (545)
T ss_pred HHHHHHHHHHH----------cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCC--
Confidence 99999999976 477889999999999999999999999999999999999999999999999999876
Q ss_pred eecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchh
Q 014006 305 QYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (432)
Q Consensus 305 ~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (432)
+.++|+||+||+||. .+|.||.++++++..
T Consensus 457 ----------------s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~ 487 (545)
T PTZ00110 457 ----------------QIEDYVHRIGRTGRAGAKGASYTFLTPDKYR 487 (545)
T ss_pred ----------------CHHHHHHHhcccccCCCCceEEEEECcchHH
Confidence 777999999999999 789999999887654
No 20
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.8e-47 Score=367.64 Aligned_cols=310 Identities=18% Similarity=0.168 Sum_probs=229.0
Q ss_pred hhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcC--------CCCCcEEEecccchhhhHHHHHHHHHH---hC
Q 014006 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG--------YTKSGIIGVTQPRRVAAVSVARRVAQE---LG 74 (432)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~--------~~~~~~vl~~~P~~~l~~q~~~~~~~~---~~ 74 (432)
.+.|.++++.+.+|++++++|||||||| +++.+++.... ...+.++++++|+++|+.|+++.+... .+
T Consensus 32 t~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~ 111 (423)
T PRK04837 32 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATG 111 (423)
T ss_pred CHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhccCC
Confidence 5789999999999999999999999999 44333332221 123468999999999999998776443 33
Q ss_pred CccCCeeeeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC--
Q 014006 75 VRLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-- 149 (432)
Q Consensus 75 ~~~~~~~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-- 149 (432)
..++...|...... ......++|+|+||+++.+++.... .+.+++++|||||| ++++.++... ++.+....+.
T Consensus 112 ~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad-~l~~~~f~~~-i~~i~~~~~~~~ 189 (423)
T PRK04837 112 LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD-RMFDLGFIKD-IRWLFRRMPPAN 189 (423)
T ss_pred ceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH-HHhhcccHHH-HHHHHHhCCCcc
Confidence 44443343211111 1123457999999999999886544 78999999999999 6777777665 4555555442
Q ss_pred CcEEEEEecccChHH---HHhhccCCCeeecCCCCC---ceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCH
Q 014006 150 KLKILITSATLDGEK---VSKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQ 223 (432)
Q Consensus 150 ~~~ii~~SAT~~~~~---~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~ 223 (432)
..+.+++|||++... ...++.++..+.+..... .+...+.... .......+..+......+++||||+++
T Consensus 190 ~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~----~~~k~~~l~~ll~~~~~~~~lVF~~t~ 265 (423)
T PRK04837 190 QRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPS----NEEKMRLLQTLIEEEWPDRAIIFANTK 265 (423)
T ss_pred ceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCC----HHHHHHHHHHHHHhcCCCeEEEEECCH
Confidence 357899999998653 335555555554433211 1111111111 122333344444445567999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccc
Q 014006 224 DDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQ 303 (432)
Q Consensus 224 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~ 303 (432)
+.|+.++..|.. .++.+..+||++++++|..++++|++|+++||||||++++|||+|+|++||++|+|.
T Consensus 266 ~~~~~l~~~L~~----------~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~- 334 (423)
T PRK04837 266 HRCEEIWGHLAA----------DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPD- 334 (423)
T ss_pred HHHHHHHHHHHh----------CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCC-
Confidence 999999999986 478899999999999999999999999999999999999999999999999998865
Q ss_pred eeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchh
Q 014006 304 RQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (432)
Q Consensus 304 ~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (432)
+.++|+||+||+||. +.|.++.|+++.+..
T Consensus 335 -----------------s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~ 365 (423)
T PRK04837 335 -----------------DCEDYVHRIGRTGRAGASGHSISLACEEYAL 365 (423)
T ss_pred -----------------chhheEeccccccCCCCCeeEEEEeCHHHHH
Confidence 667999999999999 789999999887543
No 21
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.1e-46 Score=366.37 Aligned_cols=310 Identities=18% Similarity=0.201 Sum_probs=230.2
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCC-------CCCcEEEecccchhhhHHHHHHHHHHhC---
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGY-------TKSGIIGVTQPRRVAAVSVARRVAQELG--- 74 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~-------~~~~~vl~~~P~~~l~~q~~~~~~~~~~--- 74 (432)
.+++|.++++.+.++++++++|||||||| +++.+++..... ....++++++||++|+.|+.+.+.+...
T Consensus 24 pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~ 103 (456)
T PRK10590 24 PTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLN 103 (456)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 46899999999999999999999999999 444444433211 1234799999999999999998766543
Q ss_pred CccCCeeeeeeeec---ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCC
Q 014006 75 VRLGEEVGYAIRFE---DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (432)
Q Consensus 75 ~~~~~~~g~~~~~~---~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~ 150 (432)
......+|.. ... .......+|+|+||++|++++.... .++++++||||||| ++++.++... ++.++...+..
T Consensus 104 ~~~~~~~gg~-~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah-~ll~~~~~~~-i~~il~~l~~~ 180 (456)
T PRK10590 104 IRSLVVFGGV-SINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD-RMLDMGFIHD-IRRVLAKLPAK 180 (456)
T ss_pred CEEEEEECCc-CHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-HHhccccHHH-HHHHHHhCCcc
Confidence 2222222311 111 1223568999999999999886554 78999999999999 6777776655 55566666666
Q ss_pred cEEEEEecccChHH---HHhhccCCCeeecCCCCC---ceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 014006 151 LKILITSATLDGEK---VSKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (432)
Q Consensus 151 ~~ii~~SAT~~~~~---~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~ 224 (432)
.|++++|||++.+. ...++.++..+.+..... .+...+.... . ......+..+.......++||||++++
T Consensus 181 ~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-~---~~k~~~l~~l~~~~~~~~~lVF~~t~~ 256 (456)
T PRK10590 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVD-K---KRKRELLSQMIGKGNWQQVLVFTRTKH 256 (456)
T ss_pred CeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcC-H---HHHHHHHHHHHHcCCCCcEEEEcCcHH
Confidence 89999999998642 345555555454433211 1111111111 1 112222333333455679999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccce
Q 014006 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR 304 (432)
Q Consensus 225 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~ 304 (432)
+++.++..|.+ .++.+..+||++++++|.++++.|++|+++|||||+++++|||+|+|++|||+++|.
T Consensus 257 ~~~~l~~~L~~----------~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~-- 324 (456)
T PRK10590 257 GANHLAEQLNK----------DGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPN-- 324 (456)
T ss_pred HHHHHHHHHHH----------CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCC--
Confidence 99999999976 478899999999999999999999999999999999999999999999999998865
Q ss_pred eecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchh
Q 014006 305 QYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (432)
Q Consensus 305 ~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (432)
+..+|+||+|||||. ..|.++.+++..+..
T Consensus 325 ----------------~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 325 ----------------VPEDYVHRIGRTGRAAATGEALSLVCVDEHK 355 (456)
T ss_pred ----------------CHHHhhhhccccccCCCCeeEEEEecHHHHH
Confidence 677999999999999 689999999876643
No 22
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.5e-45 Score=369.86 Aligned_cols=309 Identities=18% Similarity=0.214 Sum_probs=234.4
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcC-CCCCcEEEecccchhhhHHHHHHHHHHhCC----ccCC
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGV----RLGE 79 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~-~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~----~~~~ 79 (432)
.+++|.++++.+.++++++++|||||||| +++.+++.... ...+.++++++||++|+.|+++.+.+..+. .+..
T Consensus 29 ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~ 108 (629)
T PRK11634 29 PSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVA 108 (629)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEE
Confidence 46789999999999999999999999999 44344443332 234568999999999999999887665433 2222
Q ss_pred eeeeeeeec---ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEE
Q 014006 80 EVGYAIRFE---DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (432)
Q Consensus 80 ~~g~~~~~~---~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~ 155 (432)
.+|.. ..+ ......++|+|+||+++.+++.... .++++++||+|||| .+++.++... +..++...+...|+++
T Consensus 109 ~~gG~-~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd-~ml~~gf~~d-i~~Il~~lp~~~q~ll 185 (629)
T PRK11634 109 LYGGQ-RYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD-EMLRMGFIED-VETIMAQIPEGHQTAL 185 (629)
T ss_pred EECCc-CHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH-HHhhcccHHH-HHHHHHhCCCCCeEEE
Confidence 22321 111 1123568999999999999887654 78999999999999 5677777666 5566666677799999
Q ss_pred EecccChHH---HHhhccCCCeeecCCCCC---ceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHH
Q 014006 156 TSATLDGEK---VSKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (432)
Q Consensus 156 ~SAT~~~~~---~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~ 229 (432)
||||++... ...|+.++..+.+..... .+...+...... .....+..+.......++||||+|+..++.+
T Consensus 186 fSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~----~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l 261 (629)
T PRK11634 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM----RKNEALVRFLEAEDFDAAIIFVRTKNATLEV 261 (629)
T ss_pred EEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechh----hHHHHHHHHHHhcCCCCEEEEeccHHHHHHH
Confidence 999998743 456666666665543321 122222211111 1223334444445567999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCC
Q 014006 230 VSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPS 309 (432)
Q Consensus 230 ~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~ 309 (432)
+..|.. .++.+..+||+|++++|.++++.|++|+++|||||+++++|||+|+|++|||+|+|.
T Consensus 262 ~~~L~~----------~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~------- 324 (629)
T PRK11634 262 AEALER----------NGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPM------- 324 (629)
T ss_pred HHHHHh----------CCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCC-------
Confidence 999987 478899999999999999999999999999999999999999999999999988765
Q ss_pred CCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccch
Q 014006 310 SGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (432)
Q Consensus 310 ~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~ 349 (432)
+.++|+||+|||||. +.|.++.++++.+.
T Consensus 325 -----------~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 325 -----------DSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred -----------CHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 777999999999999 67999999987653
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6.5e-46 Score=363.56 Aligned_cols=313 Identities=19% Similarity=0.205 Sum_probs=230.5
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhc-C----CCCCcEEEecccchhhhHHHHHHHHHH---hCCc
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH-G----YTKSGIIGVTQPRRVAAVSVARRVAQE---LGVR 76 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~-~----~~~~~~vl~~~P~~~l~~q~~~~~~~~---~~~~ 76 (432)
.+++|.++++.+.+|++++++|||||||| +++.+++... . .....++++++|+++|+.|+++.+... .+..
T Consensus 24 p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~ 103 (434)
T PRK11192 24 PTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLD 103 (434)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcE
Confidence 46799999999999999999999999999 4333343322 1 123468999999999999998876443 3444
Q ss_pred cCCeeeeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEE
Q 014006 77 LGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (432)
Q Consensus 77 ~~~~~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~i 153 (432)
++...|...... .......+|+|+||++|++++.... .+.++++||||||| ++++.++... +..+....+...|+
T Consensus 104 v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~l~~~~~~~-~~~i~~~~~~~~q~ 181 (434)
T PRK11192 104 IATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RMLDMGFAQD-IETIAAETRWRKQT 181 (434)
T ss_pred EEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HHhCCCcHHH-HHHHHHhCccccEE
Confidence 444444221111 1123567899999999999887655 68899999999999 6777766554 55555555556899
Q ss_pred EEEecccChHH---HHhhc-cCCCeeecCCCCC---ceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHH
Q 014006 154 LITSATLDGEK---VSKFF-SNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDI 226 (432)
Q Consensus 154 i~~SAT~~~~~---~~~~~-~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~ 226 (432)
++||||++... +..++ .++..+....... .+...+.... ........+..+......+++||||++++++
T Consensus 182 ~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~---~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~ 258 (434)
T PRK11192 182 LLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRAD---DLEHKTALLCHLLKQPEVTRSIVFVRTRERV 258 (434)
T ss_pred EEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeC---CHHHHHHHHHHHHhcCCCCeEEEEeCChHHH
Confidence 99999997643 33333 2333333322111 1111111111 1223344444445455678999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceee
Q 014006 227 EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY 306 (432)
Q Consensus 227 ~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~ 306 (432)
+.++..|.. .++.+..+||+|++++|..+++.|++|.++|||||+++++|||+|++++||++|+|.
T Consensus 259 ~~l~~~L~~----------~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~---- 324 (434)
T PRK11192 259 HELAGWLRK----------AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPR---- 324 (434)
T ss_pred HHHHHHHHh----------CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCC----
Confidence 999999987 478899999999999999999999999999999999999999999999999988765
Q ss_pred cCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 307 NPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 307 ~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
|...|+||+||+||. ..|.++.+++..+...
T Consensus 325 --------------s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 325 --------------SADTYLHRIGRTGRAGRKGTAISLVEAHDHLL 356 (434)
T ss_pred --------------CHHHHhhcccccccCCCCceEEEEecHHHHHH
Confidence 777999999999999 6899999998776543
No 24
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.1e-46 Score=369.84 Aligned_cols=311 Identities=17% Similarity=0.150 Sum_probs=224.3
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhc-------CCCCCcEEEecccchhhhHHHHHHHHHHhC--
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRH-------GYTKSGIIGVTQPRRVAAVSVARRVAQELG-- 74 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~-------~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~-- 74 (432)
.+++|.++++.+.+|++++++|||||||| +++|.+.... ....+.++++++||++|+.|+.+.+.....
T Consensus 144 ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~ 223 (518)
T PLN00206 144 PTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGL 223 (518)
T ss_pred CCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC
Confidence 35789999999999999999999999999 3444333211 112456899999999999998877654432
Q ss_pred -CccCCeeeeeeeecc--cCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCC
Q 014006 75 -VRLGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (432)
Q Consensus 75 -~~~~~~~g~~~~~~~--~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~ 150 (432)
.......|+...... ......+|+++|||+|.+++.... .+.++++||+|||| ++++.++... +..+....+.
T Consensus 224 ~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad-~ml~~gf~~~-i~~i~~~l~~- 300 (518)
T PLN00206 224 PFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVD-CMLERGFRDQ-VMQIFQALSQ- 300 (518)
T ss_pred CceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHH-HHhhcchHHH-HHHHHHhCCC-
Confidence 222222332211111 123568999999999999886544 78999999999999 6777776555 4455555554
Q ss_pred cEEEEEecccChHH--HHhhcc-CCCeeecCCCCCc---eeEEeCCCCCcchHHHHHHHHHHHHhc--CCCCCEEEEeCC
Q 014006 151 LKILITSATLDGEK--VSKFFS-NCPTLNVPGKLYP---VEILHSKERPTSYLESALKTAIDIHVR--EPEGDVLIFMTG 222 (432)
Q Consensus 151 ~~ii~~SAT~~~~~--~~~~~~-~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvF~~t 222 (432)
.|++++|||++.+. +...+. +...+.+.....+ +........... ....+..+... ...+++||||+|
T Consensus 301 ~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~----k~~~l~~~l~~~~~~~~~~iVFv~s 376 (518)
T PLN00206 301 PQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQ----KKQKLFDILKSKQHFKPPAVVFVSS 376 (518)
T ss_pred CcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchh----HHHHHHHHHHhhcccCCCEEEEcCC
Confidence 89999999998753 444443 3333433322111 111111111111 11122222221 224689999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCccc
Q 014006 223 QDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVK 302 (432)
Q Consensus 223 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~ 302 (432)
+..++.++..|... .++.+..+||++++++|..+++.|++|+.+|||||+++++|||+|+|++||++|+|.
T Consensus 377 ~~~a~~l~~~L~~~---------~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~ 447 (518)
T PLN00206 377 RLGADLLANAITVV---------TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPN 447 (518)
T ss_pred chhHHHHHHHHhhc---------cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCC
Confidence 99999999998763 477899999999999999999999999999999999999999999999999988765
Q ss_pred ceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchh
Q 014006 303 QRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (432)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (432)
|..+|+||+|||||. ..|.++.++++++..
T Consensus 448 ------------------s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~ 478 (518)
T PLN00206 448 ------------------TIKEYIHQIGRASRMGEKGTAIVFVNEEDRN 478 (518)
T ss_pred ------------------CHHHHHHhccccccCCCCeEEEEEEchhHHH
Confidence 778999999999999 689999999877643
No 25
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.7e-46 Score=370.90 Aligned_cols=310 Identities=17% Similarity=0.189 Sum_probs=228.9
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcC--------CCCCcEEEecccchhhhHHHHHHHHHHhC--
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG--------YTKSGIIGVTQPRRVAAVSVARRVAQELG-- 74 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~--------~~~~~~vl~~~P~~~l~~q~~~~~~~~~~-- 74 (432)
.++.|.++++.+.+|++++++|||||||| +++.+++.... ...+.+++|++|+++|+.|+++.+.++..
T Consensus 32 ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~ 111 (572)
T PRK04537 32 CTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL 111 (572)
T ss_pred CCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccC
Confidence 46789999999999999999999999999 44444443221 11246899999999999999988755432
Q ss_pred -CccCCeeeeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC--CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC
Q 014006 75 -VRLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (432)
Q Consensus 75 -~~~~~~~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~--~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~ 149 (432)
..+...+|...... .......+|+|+||++|++++.... .+.++++||||||| ++++.++... +..++...+.
T Consensus 112 ~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh-~lld~gf~~~-i~~il~~lp~ 189 (572)
T PRK04537 112 GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD-RMFDLGFIKD-IRFLLRRMPE 189 (572)
T ss_pred CceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH-HHhhcchHHH-HHHHHHhccc
Confidence 23333333211111 1123467999999999999886543 67889999999999 6677666655 4555555543
Q ss_pred --CcEEEEEecccChHH---HHhhccCCCeeecCCCCC---ceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeC
Q 014006 150 --KLKILITSATLDGEK---VSKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMT 221 (432)
Q Consensus 150 --~~~ii~~SAT~~~~~---~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~ 221 (432)
..|+++||||++... ...++.+...+.+..... .+...+.... .......+..+.......++||||+
T Consensus 190 ~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~----~~~k~~~L~~ll~~~~~~k~LVF~n 265 (572)
T PRK04537 190 RGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPA----DEEKQTLLLGLLSRSEGARTMVFVN 265 (572)
T ss_pred ccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecC----HHHHHHHHHHHHhcccCCcEEEEeC
Confidence 579999999998754 335555444443332211 1111111111 1223334444444556779999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcc
Q 014006 222 GQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYV 301 (432)
Q Consensus 222 t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~ 301 (432)
|++.++.+++.|.+ .++.+..+||+|++++|.++++.|++|+++|||||+++++|||+|+|++||++|+|
T Consensus 266 t~~~ae~l~~~L~~----------~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P 335 (572)
T PRK04537 266 TKAFVERVARTLER----------HGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLP 335 (572)
T ss_pred CHHHHHHHHHHHHH----------cCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCC
Confidence 99999999999987 37789999999999999999999999999999999999999999999999998876
Q ss_pred cceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccch
Q 014006 302 KQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (432)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~ 349 (432)
. +..+|+||+||+||. ..|.++.|+++.+.
T Consensus 336 ~------------------s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 336 F------------------DAEDYVHRIGRTARLGEEGDAISFACERYA 366 (572)
T ss_pred C------------------CHHHHhhhhcccccCCCCceEEEEecHHHH
Confidence 5 778999999999999 78999999977644
No 26
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-46 Score=318.86 Aligned_cols=312 Identities=18% Similarity=0.239 Sum_probs=243.6
Q ss_pred hhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCC-CCCcEEEecccchhhhHHHHHHHHH---HhCCccCCee
Q 014006 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQ---ELGVRLGEEV 81 (432)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~-~~~~~vl~~~P~~~l~~q~~~~~~~---~~~~~~~~~~ 81 (432)
...|+.++..|.+|++++.+|..|+||| ++...++..... .+...++++.|||+|+.|+.+.+.. ..+..+...+
T Consensus 51 S~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~haci 130 (400)
T KOG0328|consen 51 SAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACI 130 (400)
T ss_pred hHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEe
Confidence 3568888999999999999999999999 544444443332 3346899999999999999877633 3445555555
Q ss_pred eeeeeecc--cCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q 014006 82 GYAIRFED--RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (432)
Q Consensus 82 g~~~~~~~--~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SA 158 (432)
|+..-.++ ...-..+++.+|||+.++++.... .-..+.++|+||||+ +++.++-.. +-.+.+..|++.|++++||
T Consensus 131 gg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe-mL~kgfk~Q-iydiyr~lp~~~Qvv~~SA 208 (400)
T KOG0328|consen 131 GGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE-MLNKGFKEQ-IYDIYRYLPPGAQVVLVSA 208 (400)
T ss_pred cCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH-HHHhhHHHH-HHHHHHhCCCCceEEEEec
Confidence 53322222 223567899999999999996554 778899999999994 666655544 6777788887899999999
Q ss_pred ccChHHH---HhhccCCCeeecCCCCCce---eEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHH
Q 014006 159 TLDGEKV---SKFFSNCPTLNVPGKLYPV---EILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (432)
Q Consensus 159 T~~~~~~---~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~ 232 (432)
|+|.+.+ .+|+.++..+.+.....+. +.+|......++ .++.+.+++....-.+++|||||++.+..+.+.
T Consensus 209 Tlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Eew---KfdtLcdLYd~LtItQavIFcnTk~kVdwLtek 285 (400)
T KOG0328|consen 209 TLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEW---KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEK 285 (400)
T ss_pred cCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhh---hHhHHHHHhhhhehheEEEEecccchhhHHHHH
Confidence 9998763 4666666666655544443 345555444444 344455555455556999999999999999999
Q ss_pred HHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCC
Q 014006 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGM 312 (432)
Q Consensus 233 L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~ 312 (432)
+++ .++.+...||+|++++|.+++.+|+.|+.+||++||+.+||+|+|.|++|||||+|.
T Consensus 286 m~~----------~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~---------- 345 (400)
T KOG0328|consen 286 MRE----------ANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPN---------- 345 (400)
T ss_pred HHh----------hCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCc----------
Confidence 988 488899999999999999999999999999999999999999999999999999876
Q ss_pred ccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 313 YSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 313 ~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
..+.|+||+||+||. +.|.++.++..++...
T Consensus 346 --------nre~YIHRIGRSGRFGRkGvainFVk~~d~~~ 377 (400)
T KOG0328|consen 346 --------NRELYIHRIGRSGRFGRKGVAINFVKSDDLRI 377 (400)
T ss_pred --------cHHHHhhhhccccccCCcceEEEEecHHHHHH
Confidence 456999999999999 7899999998887654
No 27
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.6e-45 Score=373.99 Aligned_cols=320 Identities=18% Similarity=0.155 Sum_probs=222.6
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHh--CCccCCee
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL--GVRLGEEV 81 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~--~~~~~~~~ 81 (432)
..+++|.++++.+.+|+++++++||||||| +++.+++......++.+++++.|+++|+.|+.+.+.+.. +..+....
T Consensus 36 ~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~ 115 (742)
T TIGR03817 36 RPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRPATYD 115 (742)
T ss_pred cCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEe
Confidence 468999999999999999999999999999 444444444433456799999999999999999986653 22222222
Q ss_pred eeeeeecc-cCCCCceEEEcCHHHHHHHHhcC-----CCCCCCcEEEEeCCCcCCCCH--HHHHHHHHHHH---hhhcCC
Q 014006 82 GYAIRFED-RTSERTLIKYLTDGVLLREILSN-----PDLSPYSVIILDEAHERSLNT--DILLGLVKRLV---NLRASK 150 (432)
Q Consensus 82 g~~~~~~~-~~~~~~~i~v~T~~~l~~~l~~~-----~~l~~~~~vViDE~h~~~~~~--~~~~~~l~~~~---~~~~~~ 150 (432)
|.....+. ....+++|+++||+++...++.. ..++++++|||||||. +.+. ..+..+++++. ...+.+
T Consensus 116 Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~-~~g~fg~~~~~il~rL~ri~~~~g~~ 194 (742)
T TIGR03817 116 GDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS-YRGVFGSHVALVLRRLRRLCARYGAS 194 (742)
T ss_pred CCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh-ccCccHHHHHHHHHHHHHHHHhcCCC
Confidence 32211111 12345899999999997654322 2478999999999994 3321 12233344433 333456
Q ss_pred cEEEEEecccCh-HHHHhhccCCCeeecCCCCCc---eeEEeCCCC------------CcchHHHHHHHHHHHHhcCCCC
Q 014006 151 LKILITSATLDG-EKVSKFFSNCPTLNVPGKLYP---VEILHSKER------------PTSYLESALKTAIDIHVREPEG 214 (432)
Q Consensus 151 ~~ii~~SAT~~~-~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 214 (432)
.|++++|||++. ..+.+++.+.++..+.....+ ....+.... ...........+..+.. .+.
T Consensus 195 ~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~--~~~ 272 (742)
T TIGR03817 195 PVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA--EGA 272 (742)
T ss_pred CEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHH--CCC
Confidence 899999999954 334444433344333322111 111111111 00111122233333332 357
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEE
Q 014006 215 DVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVY 294 (432)
Q Consensus 215 ~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~ 294 (432)
++||||+|++.++.++..|.+.+..... ..+..+..|||++++++|.+++++|++|++++|||||++++|||++++++
T Consensus 273 ~~IVF~~sr~~ae~l~~~l~~~l~~~~~--~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~ 350 (742)
T TIGR03817 273 RTLTFVRSRRGAELVAAIARRLLGEVDP--DLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDA 350 (742)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhcc--ccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccE
Confidence 9999999999999999999876443221 13567889999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCcc
Q 014006 295 VIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (432)
Q Consensus 295 VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~ 347 (432)
||++|+|. +.++|+||+|||||. +.|.++.+.+.+
T Consensus 351 VI~~~~P~------------------s~~~y~qRiGRaGR~G~~g~ai~v~~~~ 386 (742)
T TIGR03817 351 VVIAGFPG------------------TRASLWQQAGRAGRRGQGALVVLVARDD 386 (742)
T ss_pred EEEeCCCC------------------CHHHHHHhccccCCCCCCcEEEEEeCCC
Confidence 99999876 778999999999999 679999888643
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-45 Score=363.29 Aligned_cols=310 Identities=19% Similarity=0.228 Sum_probs=226.4
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCCC--------CCcEEEecccchhhhHHHHHHHHHHh---
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYT--------KSGIIGVTQPRRVAAVSVARRVAQEL--- 73 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~~--------~~~~vl~~~P~~~l~~q~~~~~~~~~--- 73 (432)
.+++|.++++.+.+|++++++|||||||| +++.+++...... +..++++++||++|+.|+++.+....
T Consensus 110 ~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~ 189 (475)
T PRK01297 110 CTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYT 189 (475)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhccC
Confidence 57899999999999999999999999999 4443444332111 24689999999999999998876543
Q ss_pred CCccCCeeeeeeee---cccCCCCceEEEcCHHHHHHHHhcC-CCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC
Q 014006 74 GVRLGEEVGYAIRF---EDRTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (432)
Q Consensus 74 ~~~~~~~~g~~~~~---~~~~~~~~~i~v~T~~~l~~~l~~~-~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~ 149 (432)
+..+...+|..... .......++|+|+||++|+.+.... ..++++++|||||+| +..+.++... ++.+....+.
T Consensus 190 ~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah-~l~~~~~~~~-l~~i~~~~~~ 267 (475)
T PRK01297 190 GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEAD-RMLDMGFIPQ-VRQIIRQTPR 267 (475)
T ss_pred CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHH-HHHhcccHHH-HHHHHHhCCC
Confidence 33333333321111 1112346799999999998877544 378999999999999 5566555444 4555554432
Q ss_pred --CcEEEEEecccChHH---HHhhccCCCeeecCCCCC---ceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeC
Q 014006 150 --KLKILITSATLDGEK---VSKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMT 221 (432)
Q Consensus 150 --~~~ii~~SAT~~~~~---~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~ 221 (432)
..|++++|||++.+. ...|+.++..+.+..... .+...+...... .....+..+......+++||||+
T Consensus 268 ~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~k~~~l~~ll~~~~~~~~IVF~~ 343 (475)
T PRK01297 268 KEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGS----DKYKLLYNLVTQNPWERVMVFAN 343 (475)
T ss_pred CCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecch----hHHHHHHHHHHhcCCCeEEEEeC
Confidence 469999999997643 345555554444433211 111111111111 12223334444455679999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcc
Q 014006 222 GQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYV 301 (432)
Q Consensus 222 t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~ 301 (432)
++++++.++..|.+ .++.+..+||+++.++|.++++.|++|+++|||||+++++|||+|++++||++|+|
T Consensus 344 s~~~~~~l~~~L~~----------~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P 413 (475)
T PRK01297 344 RKDEVRRIEERLVK----------DGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLP 413 (475)
T ss_pred CHHHHHHHHHHHHH----------cCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCC
Confidence 99999999999976 46788999999999999999999999999999999999999999999999999986
Q ss_pred cceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccch
Q 014006 302 KQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (432)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~ 349 (432)
. |..+|+||+|||||. +.|.++.++++++.
T Consensus 414 ~------------------s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~ 444 (475)
T PRK01297 414 E------------------DPDDYVHRIGRTGRAGASGVSISFAGEDDA 444 (475)
T ss_pred C------------------CHHHHHHhhCccCCCCCCceEEEEecHHHH
Confidence 5 778999999999999 68999999987643
No 29
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.4e-45 Score=335.02 Aligned_cols=312 Identities=18% Similarity=0.177 Sum_probs=237.7
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhc----CCCCCcEEEecccchhhhHHHHHHHHHHhCCc---
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRH----GYTKSGIIGVTQPRRVAAVSVARRVAQELGVR--- 76 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~----~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~--- 76 (432)
+.+.|+..+..+.+|+++++.|.|||||| .++|.+-... ....+..+++++|||+||.|++....+.+...
T Consensus 105 MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~ 184 (543)
T KOG0342|consen 105 MTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESI 184 (543)
T ss_pred hhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCc
Confidence 56789999999999999999999999999 5566554433 22345689999999999999998876665444
Q ss_pred -cCCeeeeeeee--cccCCCCceEEEcCHHHHHHHHhcCC--CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCc
Q 014006 77 -LGEEVGYAIRF--EDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (432)
Q Consensus 77 -~~~~~g~~~~~--~~~~~~~~~i~v~T~~~l~~~l~~~~--~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~ 151 (432)
++..+|+.... .......++|+|+|||+|++++.+.+ ...++.++|+|||| |.++.+|..+ ++.+....|++.
T Consensus 185 ~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD-rlLd~GF~~d-i~~Ii~~lpk~r 262 (543)
T KOG0342|consen 185 TVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD-RLLDIGFEED-VEQIIKILPKQR 262 (543)
T ss_pred ceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch-hhhhcccHHH-HHHHHHhccccc
Confidence 44444432221 12223589999999999999998765 67777899999999 9999999988 777778888889
Q ss_pred EEEEEecccChHH--HHhhcc--CCCeeecCCCC-----CceeEEeCCCCCcchHHHHHHHHHHHHhcCCC-CCEEEEeC
Q 014006 152 KILITSATLDGEK--VSKFFS--NCPTLNVPGKL-----YPVEILHSKERPTSYLESALKTAIDIHVREPE-GDVLIFMT 221 (432)
Q Consensus 152 ~ii~~SAT~~~~~--~~~~~~--~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lvF~~ 221 (432)
|.++||||.+.++ +.+..- ++..+.+.... ..++.-|...+.... +..++...+.... .+++|||+
T Consensus 263 qt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~----f~ll~~~LKk~~~~~KiiVF~s 338 (543)
T KOG0342|consen 263 QTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSR----FSLLYTFLKKNIKRYKIIVFFS 338 (543)
T ss_pred eeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccch----HHHHHHHHHHhcCCceEEEEec
Confidence 9999999998764 333221 23333333211 112222222222222 2233333333333 79999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcc
Q 014006 222 GQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYV 301 (432)
Q Consensus 222 t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~ 301 (432)
|...+..++..|.. ..+.|..+||++++..|..++.+|++-+.-||||||+++||+|+|+|++||++|.|
T Consensus 339 T~~~vk~~~~lL~~----------~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P 408 (543)
T KOG0342|consen 339 TCMSVKFHAELLNY----------IDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPP 408 (543)
T ss_pred hhhHHHHHHHHHhh----------cCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCC
Confidence 99999999999985 58889999999999999999999999999999999999999999999999999987
Q ss_pred cceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 302 KQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
. ...+|+||+||+||. +.|.++.+..+.+...
T Consensus 409 ~------------------d~~~YIHRvGRTaR~gk~G~alL~l~p~El~F 441 (543)
T KOG0342|consen 409 S------------------DPEQYIHRVGRTAREGKEGKALLLLAPWELGF 441 (543)
T ss_pred C------------------CHHHHHHHhccccccCCCceEEEEeChhHHHH
Confidence 6 556999999999999 6899999998776543
No 30
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-46 Score=342.03 Aligned_cols=310 Identities=22% Similarity=0.272 Sum_probs=240.9
Q ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCCCC----CcEEEecccchhhhHHHHHH---HHHHhCCccCC
Q 014006 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTK----SGIIGVTQPRRVAAVSVARR---VAQELGVRLGE 79 (432)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~~~----~~~vl~~~P~~~l~~q~~~~---~~~~~~~~~~~ 79 (432)
+.|.+.++..+-|++++.+|-|||||| +++.+++..+.+.+ ..+|++++|||+|+.|++.. ++++..+.++.
T Consensus 206 pIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L 285 (691)
T KOG0338|consen 206 PIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGL 285 (691)
T ss_pred chhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeee
Confidence 467888888889999999999999999 66666776654433 34899999999999998765 57777888888
Q ss_pred eeeee-eee-cccCCCCceEEEcCHHHHHHHHhcCC--CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEE
Q 014006 80 EVGYA-IRF-EDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (432)
Q Consensus 80 ~~g~~-~~~-~~~~~~~~~i~v~T~~~l~~~l~~~~--~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~ 155 (432)
.+|+- .+. +......++|+++|||+|.+++.+++ .+.++.++|+|||| |+++.+|... ++.+.+.++++.|.++
T Consensus 286 ~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-RMLeegFade-mnEii~lcpk~RQTmL 363 (691)
T KOG0338|consen 286 AVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-RMLEEGFADE-MNEIIRLCPKNRQTML 363 (691)
T ss_pred eecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-HHHHHHHHHH-HHHHHHhcccccccee
Confidence 88742 222 23345789999999999999998887 79999999999999 9999888776 8888888888899999
Q ss_pred EecccChHH--HHhh-ccCCCeeecCCCC---CceeEEeCCCC-Ccch-HHHHHHHHHHHHhcCCCCCEEEEeCCHHHHH
Q 014006 156 TSATLDGEK--VSKF-FSNCPTLNVPGKL---YPVEILHSKER-PTSY-LESALKTAIDIHVREPEGDVLIFMTGQDDIE 227 (432)
Q Consensus 156 ~SAT~~~~~--~~~~-~~~~~~i~~~~~~---~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~ 227 (432)
||||++.+. +... ++.+..+.++... ..+...|.... ..+- -+..+ ..+....-...++||+.|++.|.
T Consensus 364 FSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l---~~l~~rtf~~~~ivFv~tKk~AH 440 (691)
T KOG0338|consen 364 FSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAML---ASLITRTFQDRTIVFVRTKKQAH 440 (691)
T ss_pred ehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHH---HHHHHHhcccceEEEEehHHHHH
Confidence 999998753 4443 3334444444321 11111222111 1111 11121 11222223568999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeec
Q 014006 228 KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN 307 (432)
Q Consensus 228 ~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~ 307 (432)
++.-.|.- .++.+.-+||+|++++|.+.++.|++++++||||||+++||+||++|..||||.+|+
T Consensus 441 Rl~IllGL----------lgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~----- 505 (691)
T KOG0338|consen 441 RLRILLGL----------LGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPK----- 505 (691)
T ss_pred HHHHHHHH----------hhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCch-----
Confidence 99877754 588888999999999999999999999999999999999999999999999988766
Q ss_pred CCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchh
Q 014006 308 PSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (432)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (432)
+...|+||+||+.|+ +.|.++.|+.+.+..
T Consensus 506 -------------t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRk 536 (691)
T KOG0338|consen 506 -------------TIEHYLHRVGRTARAGRAGRSVTLVGESDRK 536 (691)
T ss_pred -------------hHHHHHHHhhhhhhcccCcceEEEeccccHH
Confidence 888999999999999 789999999887654
No 31
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.7e-45 Score=355.65 Aligned_cols=313 Identities=16% Similarity=0.194 Sum_probs=227.8
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcC-CCCCcEEEecccchhhhHHHHHHHHHHhC---CccCCe
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELG---VRLGEE 80 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~-~~~~~~vl~~~P~~~l~~q~~~~~~~~~~---~~~~~~ 80 (432)
.+++|.++++.+.++++++++|||||||| +++.+++.... ...+.++++++|+++|+.|+.+.+..... ..+...
T Consensus 51 ~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~ 130 (401)
T PTZ00424 51 PSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHAC 130 (401)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEE
Confidence 46789999999999999999999999999 33333333332 23456899999999999999877655432 222222
Q ss_pred eeeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 81 VGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 81 ~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
.|.....+ .......+|+++||+++.+.+.... .+.++++|||||+| +..+.++... +..+....+.+.|++++|
T Consensus 131 ~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah-~~~~~~~~~~-~~~i~~~~~~~~~~i~~S 208 (401)
T PTZ00424 131 VGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD-EMLSRGFKGQ-IYDVFKKLPPDVQVALFS 208 (401)
T ss_pred ECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH-HHHhcchHHH-HHHHHhhCCCCcEEEEEE
Confidence 33211111 1122457899999999998886654 78999999999999 4555454443 444555555569999999
Q ss_pred cccChHH---HHhhccCCCeeecCCCCC---ceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHH
Q 014006 158 ATLDGEK---VSKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVS 231 (432)
Q Consensus 158 AT~~~~~---~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~ 231 (432)
||++.+. ...++.++..+.+..... .+...+.......+ ....+..........++||||+|++.++.++.
T Consensus 209 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~ 285 (401)
T PTZ00424 209 ATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEW---KFDTLCDLYETLTITQAIIYCNTRRKVDYLTK 285 (401)
T ss_pred ecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHH---HHHHHHHHHHhcCCCeEEEEecCcHHHHHHHH
Confidence 9998753 334554444333332211 12222222222222 22333334444556789999999999999999
Q ss_pred HHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCC
Q 014006 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (432)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~ 311 (432)
.|.+ .++.+..+||+++.++|..+++.|++|+++|||||+++++|+|+|++++||++|+|.
T Consensus 286 ~l~~----------~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~--------- 346 (401)
T PTZ00424 286 KMHE----------RDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPA--------- 346 (401)
T ss_pred HHHH----------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCC---------
Confidence 9976 377899999999999999999999999999999999999999999999999988754
Q ss_pred CccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 312 ~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
|..+|+||+||+||. ..|.|+.++++++...
T Consensus 347 ---------s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~ 378 (401)
T PTZ00424 347 ---------SPENYIHRIGRSGRFGRKGVAINFVTPDDIEQ 378 (401)
T ss_pred ---------CHHHEeecccccccCCCCceEEEEEcHHHHHH
Confidence 778999999999999 6899999998877654
No 32
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.3e-45 Score=339.49 Aligned_cols=308 Identities=19% Similarity=0.237 Sum_probs=240.7
Q ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCHH-HH-HHHHHhhc---------CCCCCcEEEecccchhhhHHHHHH---HHHHh
Q 014006 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQ-LSQILHRH---------GYTKSGIIGVTQPRRVAAVSVARR---VAQEL 73 (432)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT-~~-~~~~~~~~---------~~~~~~~vl~~~P~~~l~~q~~~~---~~~~~ 73 (432)
+.|..++....+++++|..|.|||||| .+ +|.+.... ....|+..+++.|||+|+.|+... |.+.+
T Consensus 270 pIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~l 349 (673)
T KOG0333|consen 270 PIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPL 349 (673)
T ss_pred hHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccc
Confidence 567788888999999999999999999 44 34333322 223577899999999999999776 45555
Q ss_pred CCccCCeeeeeeeecc--cCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc--
Q 014006 74 GVRLGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-- 148 (432)
Q Consensus 74 ~~~~~~~~g~~~~~~~--~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~-- 148 (432)
+..+...+|+....+. +.+..+.|+++|||+|.+.+-+.- .+++..+||+|||+ +++|++|-.++.+.+-. .|
T Consensus 350 g~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldead-rmiDmgfE~dv~~iL~~-mPss 427 (673)
T KOG0333|consen 350 GIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEAD-RMIDMGFEPDVQKILEQ-MPSS 427 (673)
T ss_pred cceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchh-hhhcccccHHHHHHHHh-CCcc
Confidence 6666666774333333 456789999999999999885443 78999999999999 89999987765444332 21
Q ss_pred -----------------------CCcEEEEEecccChHH---HHhhccCCCeeecCCC--CCce-eEEeCCCCCcchHHH
Q 014006 149 -----------------------SKLKILITSATLDGEK---VSKFFSNCPTLNVPGK--LYPV-EILHSKERPTSYLES 199 (432)
Q Consensus 149 -----------------------~~~~ii~~SAT~~~~~---~~~~~~~~~~i~~~~~--~~~~-~~~~~~~~~~~~~~~ 199 (432)
.-.|.++||||+++.. ...||.++.++.+... ..|. +........ +.
T Consensus 428 n~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~e----d~ 503 (673)
T KOG0333|consen 428 NAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSE----DE 503 (673)
T ss_pred ccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecc----hH
Confidence 0168999999998743 6688888877776542 2222 111111111 12
Q ss_pred HHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEe
Q 014006 200 ALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVS 279 (432)
Q Consensus 200 ~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilva 279 (432)
..+.+..+.......++|||+|+++.|+.+++.|.+ .++.+..+||+-++++|..+++.|++|...|+||
T Consensus 504 k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK----------~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVa 573 (673)
T KOG0333|consen 504 KRKKLIEILESNFDPPIIIFVNTKKGADALAKILEK----------AGYKVTTLHGGKSQEQRENALADFREGTGDILVA 573 (673)
T ss_pred HHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhh----------ccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 244555555555677999999999999999999998 4899999999999999999999999999999999
Q ss_pred ecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccch
Q 014006 280 TNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (432)
Q Consensus 280 T~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~ 349 (432)
||+++||||||||.+||||++.+ |...|.||+||+||+ +.|.++.|+++++-
T Consensus 574 TDvAgRGIDIpnVSlVinydmak------------------sieDYtHRIGRTgRAGk~GtaiSflt~~dt 626 (673)
T KOG0333|consen 574 TDVAGRGIDIPNVSLVINYDMAK------------------SIEDYTHRIGRTGRAGKSGTAISFLTPADT 626 (673)
T ss_pred ecccccCCCCCccceeeecchhh------------------hHHHHHHHhccccccccCceeEEEeccchh
Confidence 99999999999999999999877 888999999999999 67999999998873
No 33
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-45 Score=334.28 Aligned_cols=327 Identities=19% Similarity=0.201 Sum_probs=252.7
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhc----CCCCC--cEEEecccchhhhHHHHHHHHH----HhC
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH----GYTKS--GIIGVTQPRRVAAVSVARRVAQ----ELG 74 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~----~~~~~--~~vl~~~P~~~l~~q~~~~~~~----~~~ 74 (432)
+.++|.+.++.+..++++++.|+|||||| +++.+++... ...+. .-.+++.|||+|+.|+.+.... ..+
T Consensus 29 mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~ 108 (567)
T KOG0345|consen 29 MTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPN 108 (567)
T ss_pred cCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhc
Confidence 34689999999999999999999999999 6665565543 11222 3678999999999999877533 244
Q ss_pred CccCCeeeeeeeeccc---CCCCceEEEcCHHHHHHHHhcCC---CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc
Q 014006 75 VRLGEEVGYAIRFEDR---TSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (432)
Q Consensus 75 ~~~~~~~g~~~~~~~~---~~~~~~i~v~T~~~l~~~l~~~~---~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~ 148 (432)
..+...+|+..-.++. ....++|+|+|||+|.+++.... .+..++++|+|||| |.++++|... +..++...|
T Consensus 109 l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmgFe~~-~n~ILs~LP 186 (567)
T KOG0345|consen 109 LNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMGFEAS-VNTILSFLP 186 (567)
T ss_pred cceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhcccHHHH-HHHHHHhcc
Confidence 5566667753222222 24678999999999999997633 45599999999999 9999999888 888889999
Q ss_pred CCcEEEEEecccChHH---HHhhccCCCeeecCCCC---Cc--eeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEe
Q 014006 149 SKLKILITSATLDGEK---VSKFFSNCPTLNVPGKL---YP--VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFM 220 (432)
Q Consensus 149 ~~~~ii~~SAT~~~~~---~~~~~~~~~~i~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~ 220 (432)
++.+.-+||||.+.+. ....+.|+..+.+.... .| +...|..... ......++++..+...+++|||+
T Consensus 187 KQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a----~eK~~~lv~~L~~~~~kK~iVFF 262 (567)
T KOG0345|consen 187 KQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA----DEKLSQLVHLLNNNKDKKCIVFF 262 (567)
T ss_pred cccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecH----HHHHHHHHHHHhccccccEEEEe
Confidence 9899999999997643 34455666666665433 23 4444443332 33455666666677888999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCc
Q 014006 221 TGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (432)
Q Consensus 221 ~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~ 300 (432)
+|...++..+..+... .....++.+||.|.+.+|..++++|++....+++|||+++||+|||+|++||++|.
T Consensus 263 ~TCasVeYf~~~~~~~--------l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~Dp 334 (567)
T KOG0345|consen 263 PTCASVEYFGKLFSRL--------LKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDP 334 (567)
T ss_pred cCcchHHHHHHHHHHH--------hCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCC
Confidence 9999999999999876 25778999999999999999999999988899999999999999999999999998
Q ss_pred ccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCc--cchhhcCCCCCCCccccC
Q 014006 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPS--TVYHDEFLDVTVPEIQRS 364 (432)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~--~~~~~~~~~~~~~~i~~~ 364 (432)
|+ ..++|+||+||+||. +.|.++.+..+ .+|...|.....|++.+.
T Consensus 335 P~------------------~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~ 383 (567)
T KOG0345|consen 335 PK------------------DPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERI 383 (567)
T ss_pred CC------------------ChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhh
Confidence 76 556999999999999 67888777644 445554555555655544
No 34
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.5e-44 Score=372.35 Aligned_cols=406 Identities=16% Similarity=0.139 Sum_probs=264.8
Q ss_pred hhhhHHHHHHH-HhcCCEEEEEcCCCCCHHHHH-HHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHH--hCCccCCee
Q 014006 6 ILQYEETIVET-VEQNPVVVVIGETGSGKSTQL-SQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQE--LGVRLGEEV 81 (432)
Q Consensus 6 ~~~~q~~i~~~-i~~~~~~ii~apTGsGKT~~~-~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~--~~~~~~~~~ 81 (432)
.+++|.++++. +.+|++++++||||||||..+ .+++... ...+.++++++|+++|+.|+++++.+. ++..++...
T Consensus 24 l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l-~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~ 102 (720)
T PRK00254 24 LYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKL-LREGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTT 102 (720)
T ss_pred CCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHH-HhcCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 57899999985 889999999999999999433 3333322 224568999999999999999988653 234444444
Q ss_pred eeeeeecccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 82 g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
|... ........++|+++||+++..++.... +++++++||+||+| ...+.+.. ..+..++.....+.|+|++|||+
T Consensus 103 Gd~~-~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H-~l~~~~rg-~~le~il~~l~~~~qiI~lSATl 179 (720)
T PRK00254 103 GDYD-STDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIH-LIGSYDRG-ATLEMILTHMLGRAQILGLSATV 179 (720)
T ss_pred CCCC-CchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcC-ccCCccch-HHHHHHHHhcCcCCcEEEEEccC
Confidence 4211 112223467999999999988776543 78999999999999 44443332 22444444444568999999999
Q ss_pred -ChHHHHhhccCCCeeecCCCCCceeE--EeCC-----CCC-cchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHH
Q 014006 161 -DGEKVSKFFSNCPTLNVPGKLYPVEI--LHSK-----ERP-TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVS 231 (432)
Q Consensus 161 -~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~ 231 (432)
+.+.+++|++. ..+....++.+... .+.. ... ..+.......+.... ..++++||||+|++.|+.++.
T Consensus 180 ~n~~~la~wl~~-~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~vLVF~~sr~~~~~~a~ 256 (720)
T PRK00254 180 GNAEELAEWLNA-ELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAV--KKGKGALVFVNTRRSAEKEAL 256 (720)
T ss_pred CCHHHHHHHhCC-ccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHH--HhCCCEEEEEcChHHHHHHHH
Confidence 56779999854 33333444444421 1111 110 011122222233322 246799999999999999998
Q ss_pred HHHHHHhhcc----------------CC-------CCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccc
Q 014006 232 KLEDKIRSLD----------------EG-------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLT 288 (432)
Q Consensus 232 ~L~~~~~~~~----------------~~-------~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gid 288 (432)
.|.+.....- .. .....++.+|||+|++++|..+++.|++|.++|||||+++++|+|
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvn 336 (720)
T PRK00254 257 ELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGIN 336 (720)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcC
Confidence 8865422100 00 001346999999999999999999999999999999999999999
Q ss_pred cCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC---CCCeEEEecCccc----hhhcCCCCCCCcc
Q 014006 289 VDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPSTV----YHDEFLDVTVPEI 361 (432)
Q Consensus 289 i~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~---~~G~~~~l~~~~~----~~~~~~~~~~~~i 361 (432)
+|++++||... ..|+ .. .....+..+|+||+|||||. ..|.++.+.+..+ +.. +.. ..|+-
T Consensus 337 ipa~~vVI~~~----~~~~-~~-----~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~-~~~-~~pe~ 404 (720)
T PRK00254 337 LPAFRVIIRDT----KRYS-NF-----GWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMER-YIF-GKPEK 404 (720)
T ss_pred CCceEEEECCc----eEcC-CC-----CceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHH-HHh-CCchh
Confidence 99999999633 2232 11 12344677999999999997 4699999986543 222 211 11211
Q ss_pred c------cCCchHHHHHHhhCCC-CCC----cc--ccccCCCCCC----HHHHHHHHHHHHHccCCCCC--C--CCCHHH
Q 014006 362 Q------RSSLAGSVLYLKSLDL-SDI----NV--LKFDFLDPPS----SESLEDALKQLYLIDAIDEN--G--SITSIG 420 (432)
Q Consensus 362 ~------~~~l~~~~l~l~~~~~-~~~----~~--~~~~~~~~p~----~~~l~~~~~~L~~~g~i~~~--~--~~t~lG 420 (432)
. .+.+...++.....+. .+. .. ..|-|...|. .+.++++++.|.+.|+|+.+ + .+|++|
T Consensus 405 l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG 484 (720)
T PRK00254 405 LFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLPLG 484 (720)
T ss_pred hhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeChHH
Confidence 1 1223344444444332 220 00 1111211232 34678899999999999643 2 589999
Q ss_pred HHhhcCCCCC
Q 014006 421 RTMAGTSFFA 430 (432)
Q Consensus 421 ~~~~~l~~~~ 430 (432)
++++.++++|
T Consensus 485 ~~~s~~~i~~ 494 (720)
T PRK00254 485 IRTSQLYIDP 494 (720)
T ss_pred HHHHHHhCCH
Confidence 9999999986
No 35
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=7.4e-45 Score=336.18 Aligned_cols=314 Identities=18% Similarity=0.224 Sum_probs=254.7
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhc---CC--CCCcEEEecccchhhhHHHHHHH---HHHhCCc
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH---GY--TKSGIIGVTQPRRVAAVSVARRV---AQELGVR 76 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~---~~--~~~~~vl~~~P~~~l~~q~~~~~---~~~~~~~ 76 (432)
+.+.|.+.+...++|++++-.|.|||||| +++.+.+..+ .| ..|.-++++.|||+||.|++..+ .+..+.+
T Consensus 92 ~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fS 171 (758)
T KOG0343|consen 92 MTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFS 171 (758)
T ss_pred HHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccc
Confidence 45789999999999999999999999999 5444444332 33 34668999999999999998875 5566778
Q ss_pred cCCeeeee-eeecccCCCCceEEEcCHHHHHHHHhcCC--CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEE
Q 014006 77 LGEEVGYA-IRFEDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (432)
Q Consensus 77 ~~~~~g~~-~~~~~~~~~~~~i~v~T~~~l~~~l~~~~--~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~i 153 (432)
.|..+|+. ..++...-...+|+|||||+|+.++-..+ ...++.++|+|||| |+++++|-.. +..++...|...|.
T Consensus 172 aGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R~LDMGFk~t-L~~Ii~~lP~~RQT 249 (758)
T KOG0343|consen 172 AGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-RMLDMGFKKT-LNAIIENLPKKRQT 249 (758)
T ss_pred cceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-HHHHHhHHHH-HHHHHHhCChhhee
Confidence 88888853 34444445789999999999999998776 56789999999999 9999999877 78888888888999
Q ss_pred EEEecccCh--HHHHhh-ccCCCeeecCCC-----CCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHH
Q 014006 154 LITSATLDG--EKVSKF-FSNCPTLNVPGK-----LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (432)
Q Consensus 154 i~~SAT~~~--~~~~~~-~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~ 225 (432)
++||||... ..++++ +.++..+.+... +..+...|... ..+..+..++....++...++|||++|.++
T Consensus 250 LLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v----~l~~Ki~~L~sFI~shlk~K~iVF~SscKq 325 (758)
T KOG0343|consen 250 LLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIV----PLEDKIDMLWSFIKSHLKKKSIVFLSSCKQ 325 (758)
T ss_pred eeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEE----ehhhHHHHHHHHHHhccccceEEEEehhhH
Confidence 999999854 346655 456666655422 11222222221 234567777777778888899999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCccccee
Q 014006 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ 305 (432)
Q Consensus 226 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~ 305 (432)
+..++..+.+. .+++.+..+||+|++..|..++.+|-..+--||+|||+++||+|+|.|++||++|.
T Consensus 326 vkf~~e~F~rl--------rpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DC----- 392 (758)
T KOG0343|consen 326 VKFLYEAFCRL--------RPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDC----- 392 (758)
T ss_pred HHHHHHHHHhc--------CCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecC-----
Confidence 99999999876 47999999999999999999999999988999999999999999999999999875
Q ss_pred ecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 306 YNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 306 ~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
|....+|+||+||+.|. ..|.++.+.++.+.+.
T Consensus 393 -------------Pedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~ 426 (758)
T KOG0343|consen 393 -------------PEDVDTYIHRVGRTARYKERGESLLMLTPSEEEA 426 (758)
T ss_pred -------------chhHHHHHHHhhhhhcccCCCceEEEEcchhHHH
Confidence 55888999999999999 7899999998877433
No 36
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-44 Score=317.84 Aligned_cols=313 Identities=20% Similarity=0.249 Sum_probs=238.9
Q ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCCCC-CcEEEecccchhhhHHHHHHHH---HHhCCccCCeee
Q 014006 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTK-SGIIGVTQPRRVAAVSVARRVA---QELGVRLGEEVG 82 (432)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~~~-~~~vl~~~P~~~l~~q~~~~~~---~~~~~~~~~~~g 82 (432)
+.|+..++.|.+|++++-+|.|||||| .++.+++..+...+ +.-.+++.|||+|+.|++++|. +..+.++...+|
T Consensus 32 piQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivG 111 (442)
T KOG0340|consen 32 PIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVG 111 (442)
T ss_pred chHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEc
Confidence 578999999999999999999999999 66667777665544 4578899999999999999873 344455555556
Q ss_pred eeee--ecccCCCCceEEEcCHHHHHHHHhcCC-----CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEE
Q 014006 83 YAIR--FEDRTSERTLIKYLTDGVLLREILSNP-----DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (432)
Q Consensus 83 ~~~~--~~~~~~~~~~i~v~T~~~l~~~l~~~~-----~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~ 155 (432)
+... .......+++++++|||++..++.++. .+.++.++|+|||| +.++.+|-.. ++.+....|...|.++
T Consensus 112 G~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rvL~~~f~d~-L~~i~e~lP~~RQtLl 189 (442)
T KOG0340|consen 112 GTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RVLAGCFPDI-LEGIEECLPKPRQTLL 189 (442)
T ss_pred cHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hhhccchhhH-HhhhhccCCCccceEE
Confidence 4322 223345789999999999999997763 68899999999999 8888877665 7778888887679999
Q ss_pred EecccChHHHHhhccCCC------eeecCCCCCceeEEeCCC--CCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHH
Q 014006 156 TSATLDGEKVSKFFSNCP------TLNVPGKLYPVEILHSKE--RPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIE 227 (432)
Q Consensus 156 ~SAT~~~~~~~~~~~~~~------~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~ 227 (432)
||||++.. +...++-+. .++.......++..+... ...+..+..+..++....+++.+.++||+++..+|+
T Consensus 190 fSATitd~-i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ 268 (442)
T KOG0340|consen 190 FSATITDT-IKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQ 268 (442)
T ss_pred EEeehhhH-HHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHH
Confidence 99999765 333332111 111111111111111111 011112233333444444557889999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeec
Q 014006 228 KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN 307 (432)
Q Consensus 228 ~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~ 307 (432)
.++..|+. ..+.+..+||.|++.+|...+.+|+.+..+||||||+++||+|||.|..|||+++|+.+
T Consensus 269 ~l~~~l~~----------le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P--- 335 (442)
T KOG0340|consen 269 LLSMTLKN----------LEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDP--- 335 (442)
T ss_pred HHHHHHhh----------hceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCH---
Confidence 99999987 58999999999999999999999999999999999999999999999999999988744
Q ss_pred CCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 308 PSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
..|+||.||+.|+ +.|.++.++++.+.+.
T Consensus 336 ---------------~~yiHRvGRtARAGR~G~aiSivt~rDv~l 365 (442)
T KOG0340|consen 336 ---------------KDYIHRVGRTARAGRKGMAISIVTQRDVEL 365 (442)
T ss_pred ---------------HHHHHhhcchhcccCCcceEEEechhhHHH
Confidence 4999999999999 7899999999877654
No 37
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-45 Score=315.60 Aligned_cols=311 Identities=19% Similarity=0.238 Sum_probs=244.0
Q ss_pred hhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcC-CCCCcEEEecccchhhhHHHHH---HHHHHhCCccCCee
Q 014006 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG-YTKSGIIGVTQPRRVAAVSVAR---RVAQELGVRLGEEV 81 (432)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~-~~~~~~vl~~~P~~~l~~q~~~---~~~~~~~~~~~~~~ 81 (432)
.+.|++.++....|++++..|.+|+||| +++.+.+.... .......++++|+|+||.|..+ ++++..+..+..++
T Consensus 109 SPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvtt 188 (459)
T KOG0326|consen 109 SPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTT 188 (459)
T ss_pred CCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEec
Confidence 4678999999999999999999999999 44444544443 3344578999999999987654 45566666666667
Q ss_pred eeeeeecccC--CCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q 014006 82 GYAIRFEDRT--SERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (432)
Q Consensus 82 g~~~~~~~~~--~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SA 158 (432)
|+....++.. ....+++++|||+++++..... .+++..++|+|||| ..++.+|... +..++...|+..|++++||
T Consensus 189 GGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD-KlLs~~F~~~-~e~li~~lP~~rQillySA 266 (459)
T KOG0326|consen 189 GGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD-KLLSVDFQPI-VEKLISFLPKERQILLYSA 266 (459)
T ss_pred CCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh-hhhchhhhhH-HHHHHHhCCccceeeEEec
Confidence 7554444333 4678999999999999997765 89999999999999 7888888765 7888888898899999999
Q ss_pred ccChHH---HHhhccCCCeeecCCCC--CceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHH
Q 014006 159 TLDGEK---VSKFFSNCPTLNVPGKL--YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKL 233 (432)
Q Consensus 159 T~~~~~---~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L 233 (432)
|.|... ..+++.++..+...... ..+..+|-....... -..++.++. .-.-.+.+|||||.+.+|.+|+.+
T Consensus 267 TFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qK-vhCLntLfs---kLqINQsIIFCNS~~rVELLAkKI 342 (459)
T KOG0326|consen 267 TFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQK-VHCLNTLFS---KLQINQSIIFCNSTNRVELLAKKI 342 (459)
T ss_pred ccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhh-hhhHHHHHH---HhcccceEEEeccchHhHHHHHHH
Confidence 998643 55677676666654432 223333322211111 112223322 223458999999999999999999
Q ss_pred HHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCc
Q 014006 234 EDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMY 313 (432)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~ 313 (432)
.+ .++.+++.|+.|-+++|.+++++|++|..+.|||||.+.||||+++|++|||||+|+
T Consensus 343 Te----------lGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk----------- 401 (459)
T KOG0326|consen 343 TE----------LGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK----------- 401 (459)
T ss_pred Hh----------ccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC-----------
Confidence 87 599999999999999999999999999999999999999999999999999999988
Q ss_pred cceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 314 SLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 314 ~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
+.++|+||+||+||. ..|.++.|++-++...
T Consensus 402 -------~aEtYLHRIGRsGRFGhlGlAInLityedrf~ 433 (459)
T KOG0326|consen 402 -------NAETYLHRIGRSGRFGHLGLAINLITYEDRFN 433 (459)
T ss_pred -------CHHHHHHHccCCccCCCcceEEEEEehhhhhh
Confidence 667999999999999 6899999998776654
No 38
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.2e-43 Score=357.88 Aligned_cols=306 Identities=19% Similarity=0.169 Sum_probs=213.3
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeee
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~ 83 (432)
..+.|+++++++..|+++++++|||+||| +++|.+.. ++.++|+.|+++|+.++...+.. .+.......+.
T Consensus 461 FRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmqDQV~~L~~-~GI~Aa~L~s~ 533 (1195)
T PLN03137 461 FRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQIMNLLQ-ANIPAASLSAG 533 (1195)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHHHHHHHHHh-CCCeEEEEECC
Confidence 35789999999999999999999999999 45655432 35789999999999877666543 34443333331
Q ss_pred eeeecc------c--CCCCceEEEcCHHHHHH--HHhc----CCCCCCCcEEEEeCCCcCCCCH-HHHHHH--HHHHHhh
Q 014006 84 AIRFED------R--TSERTLIKYLTDGVLLR--EILS----NPDLSPYSVIILDEAHERSLNT-DILLGL--VKRLVNL 146 (432)
Q Consensus 84 ~~~~~~------~--~~~~~~i~v~T~~~l~~--~l~~----~~~l~~~~~vViDE~h~~~~~~-~~~~~~--l~~~~~~ 146 (432)
....+. . .....+|+|+|||++.. .+.. -.....+++||||||||..-+. +|...+ +..+...
T Consensus 534 ~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~ 613 (1195)
T PLN03137 534 MEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQK 613 (1195)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHh
Confidence 111111 0 12568999999999852 1211 1134568999999999733222 232222 2334444
Q ss_pred hcCCcEEEEEecccChHH---HHhhccCCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHh-cCCCCCEEEEeCC
Q 014006 147 RASKLKILITSATLDGEK---VSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHV-REPEGDVLIFMTG 222 (432)
Q Consensus 147 ~~~~~~ii~~SAT~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lvF~~t 222 (432)
.+. .+++++|||++... +.+.++....+.+..........|........ ....+..... ...++..||||+|
T Consensus 614 fp~-vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk---~le~L~~~I~~~~~~esgIIYC~S 689 (1195)
T PLN03137 614 FPN-IPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKK---CLEDIDKFIKENHFDECGIIYCLS 689 (1195)
T ss_pred CCC-CCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccchh---HHHHHHHHHHhcccCCCceeEeCc
Confidence 554 88999999998753 44444322222221111111222221111111 1122222222 2335689999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCccc
Q 014006 223 QDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVK 302 (432)
Q Consensus 223 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~ 302 (432)
+++++.++..|.. .++.+.+|||+|++++|..+++.|.+|+++|||||++++||||+|+|++|||+|+|+
T Consensus 690 Rke~E~LAe~L~~----------~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPk 759 (1195)
T PLN03137 690 RMDCEKVAERLQE----------FGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPK 759 (1195)
T ss_pred hhHHHHHHHHHHH----------CCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCC
Confidence 9999999999987 488899999999999999999999999999999999999999999999999999877
Q ss_pred ceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchh
Q 014006 303 QRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (432)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (432)
|.+.|+||+|||||. .+|.|+.+|+..++.
T Consensus 760 ------------------SiEsYyQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 760 ------------------SIEGYHQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred ------------------CHHHHHhhhcccCCCCCCceEEEEecHHHHH
Confidence 788999999999999 689999999877664
No 39
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.3e-42 Score=340.04 Aligned_cols=304 Identities=18% Similarity=0.153 Sum_probs=214.6
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeee
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~ 83 (432)
..++|.++++.+.+|+++++++||||||| +++|.+. .++.++++.|+++|+.|+.+++.. .+.......+.
T Consensus 12 ~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~l~~-~gi~~~~l~~~ 84 (470)
T TIGR00614 12 FRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQLKA-SGIPATFLNSS 84 (470)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHHHHH-cCCcEEEEeCC
Confidence 35789999999999999999999999999 3455443 135788999999999999888753 44443322221
Q ss_pred eeee------cccCCCCceEEEcCHHHHHHHH--hcCC-CCCCCcEEEEeCCCcCCCCH-HHHHH--HHHHHHhhhcCCc
Q 014006 84 AIRF------EDRTSERTLIKYLTDGVLLREI--LSNP-DLSPYSVIILDEAHERSLNT-DILLG--LVKRLVNLRASKL 151 (432)
Q Consensus 84 ~~~~------~~~~~~~~~i~v~T~~~l~~~l--~~~~-~l~~~~~vViDE~h~~~~~~-~~~~~--~l~~~~~~~~~~~ 151 (432)
.... ........+++|+||+++.... .... ...++++|||||||+..-+. ++... .+..+....+. .
T Consensus 85 ~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~-~ 163 (470)
T TIGR00614 85 QSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPN-V 163 (470)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCC-C
Confidence 1111 0112356799999999875321 1111 46789999999999633221 22222 23344444554 8
Q ss_pred EEEEEecccChHH---HHhhcc--CCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHh-cCCCCCEEEEeCCHHH
Q 014006 152 KILITSATLDGEK---VSKFFS--NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHV-REPEGDVLIFMTGQDD 225 (432)
Q Consensus 152 ~ii~~SAT~~~~~---~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lvF~~t~~~ 225 (432)
+++++|||++... +.++++ ++.++........+....... ..+.... +..... ...+..+||||+|+++
T Consensus 164 ~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~-~~~~~~~----l~~~l~~~~~~~~~IIF~~s~~~ 238 (470)
T TIGR00614 164 PIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRK-TPKILED----LLRFIRKEFKGKSGIIYCPSRKK 238 (470)
T ss_pred ceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeC-CccHHHH----HHHHHHHhcCCCceEEEECcHHH
Confidence 9999999998754 334432 233332222211121111111 1122222 222222 3345567999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCccccee
Q 014006 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ 305 (432)
Q Consensus 226 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~ 305 (432)
++.++..|.+ .++.+..+||+|++++|.++++.|++|..+|||||+++++|||+|+|++||++++|+
T Consensus 239 ~e~la~~L~~----------~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~--- 305 (470)
T TIGR00614 239 SEQVTASLQN----------LGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK--- 305 (470)
T ss_pred HHHHHHHHHh----------cCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC---
Confidence 9999999987 478899999999999999999999999999999999999999999999999999876
Q ss_pred ecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchh
Q 014006 306 YNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (432)
Q Consensus 306 ~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (432)
|.+.|+||+|||||. .+|.|+.+|+..+..
T Consensus 306 ---------------s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 306 ---------------SMESYYQESGRAGRDGLPSECHLFYAPADIN 336 (470)
T ss_pred ---------------CHHHHHhhhcCcCCCCCCceEEEEechhHHH
Confidence 778999999999999 689999999887664
No 40
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=3.7e-43 Score=326.57 Aligned_cols=383 Identities=20% Similarity=0.206 Sum_probs=275.7
Q ss_pred HHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhc-CCCCCcEEEecccchhhhHHHHHHHHHHh---CCccCCeeeeeeee-
Q 014006 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQEL---GVRLGEEVGYAIRF- 87 (432)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~-~~~~~~~vl~~~P~~~l~~q~~~~~~~~~---~~~~~~~~g~~~~~- 87 (432)
+-.-+.+|+|++++++|+||||... -++... ....+++.++++|..+||+|.++.|.+.+ +..+...+|.+-..
T Consensus 225 Ve~GLLeG~nllVVSaTasGKTLIg-ElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~ 303 (830)
T COG1202 225 VEAGLLEGENLLVVSATASGKTLIG-ELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKT 303 (830)
T ss_pred hhhccccCCceEEEeccCCCcchHH-HhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcc
Confidence 4445789999999999999998433 233322 22457899999999999999999986654 34444555532111
Q ss_pred -----cccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHH----HHHHHHHHHHhhhcCCcEEEEEec
Q 014006 88 -----EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTD----ILLGLVKRLVNLRASKLKILITSA 158 (432)
Q Consensus 88 -----~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~----~~~~~l~~~~~~~~~~~~ii~~SA 158 (432)
......+++|+|+|++-+-.+++....+.+++.|||||+| +++.+ .+-.++.++....|. .|+|.+||
T Consensus 304 ~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiH--tL~deERG~RLdGLI~RLr~l~~~-AQ~i~LSA 380 (830)
T COG1202 304 REEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIH--TLEDEERGPRLDGLIGRLRYLFPG-AQFIYLSA 380 (830)
T ss_pred cCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeee--eccchhcccchhhHHHHHHHhCCC-CeEEEEEe
Confidence 1233467999999999998888888899999999999999 44432 366778888888875 99999999
Q ss_pred cc-ChHHHHhhccCCCeeecCCCCCceeEEeCCCCCcch----HHHHHHHHHHHH-hcCCCCCEEEEeCCHHHHHHHHHH
Q 014006 159 TL-DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSY----LESALKTAIDIH-VREPEGDVLIFMTGQDDIEKLVSK 232 (432)
Q Consensus 159 T~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~lvF~~t~~~~~~~~~~ 232 (432)
|+ |++.+++.+ +...+..+.++.|++.+..-...... +....+.-+... ...-.|++|||.+|++.|+.+++.
T Consensus 381 TVgNp~elA~~l-~a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~ 459 (830)
T COG1202 381 TVGNPEELAKKL-GAKLVLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADA 459 (830)
T ss_pred ecCChHHHHHHh-CCeeEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHH
Confidence 99 778899998 68888899999999876544332222 222222222211 233468999999999999999999
Q ss_pred HHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCC
Q 014006 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGM 312 (432)
Q Consensus 233 L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~ 312 (432)
|.. .++.+.+||+||+..+|+.++..|.++.+.++|+|.+++.|+|+|+-.+|..+
T Consensus 460 L~~----------kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEs-------------- 515 (830)
T COG1202 460 LTG----------KGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFES-------------- 515 (830)
T ss_pred hhc----------CCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHH--------------
Confidence 987 38899999999999999999999999999999999999999999976666652
Q ss_pred ccceEeeecHhhHHHhhcccCCC---CCCeEEEecCcc-chhhcCCCCC----------CCc--ccc---CCchHHHHHH
Q 014006 313 YSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPST-VYHDEFLDVT----------VPE--IQR---SSLAGSVLYL 373 (432)
Q Consensus 313 ~~~~~~~~s~~~~~qr~GRaGR~---~~G~~~~l~~~~-~~~~~~~~~~----------~~~--i~~---~~l~~~~l~l 373 (432)
.-|...|.|..+|.||.|||||. ..|++|.+..+. .|...|.+.. .|+ +.. .+-.+-+|.
T Consensus 516 LaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA- 594 (830)
T COG1202 516 LAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA- 594 (830)
T ss_pred HHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH-
Confidence 34667899999999999999999 579999998544 3333222211 111 111 111122332
Q ss_pred hhCCCCC--C---ccccccCCCCCCHHHHHHHHHHHHHccCCCCCC---CCCHHHHHhhcCCCC
Q 014006 374 KSLDLSD--I---NVLKFDFLDPPSSESLEDALKQLYLIDAIDENG---SITSIGRTMAGTSFF 429 (432)
Q Consensus 374 ~~~~~~~--~---~~~~~~~~~~p~~~~l~~~~~~L~~~g~i~~~~---~~t~lG~~~~~l~~~ 429 (432)
+.+..+ . ++....+-. .-..+.++..|++.|+|+.+| ++|+.|++++..=+.
T Consensus 595 -~~~v~~s~~~i~~v~~~~~g~---~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl~ 654 (830)
T COG1202 595 -SAGVTNSLSVIERVNSLMLGA---AFDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFLG 654 (830)
T ss_pred -HhhhcCcHHHHhhcChhhccc---cCCHHHHHHHHHhcCCeeccCCEeeeccccceeEEeecC
Confidence 222222 0 011111111 123467899999999999887 699999998865443
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.2e-41 Score=343.29 Aligned_cols=303 Identities=17% Similarity=0.198 Sum_probs=214.4
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeee
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~ 83 (432)
.++.|+++++.+.+|+++++++||||||| +++|.+.. .+.+++++|+++|+.|+.+.+.. .+.......+.
T Consensus 26 ~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv~~l~~-~gi~~~~~~s~ 98 (607)
T PRK11057 26 FRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQVDQLLA-NGVAAACLNST 98 (607)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHHHHHHH-cCCcEEEEcCC
Confidence 35789999999999999999999999999 34554432 34688999999999999888754 34433222221
Q ss_pred eeee------cccCCCCceEEEcCHHHHHHHH-hcCCCCCCCcEEEEeCCCcCCCCH-HHH--HHHHHHHHhhhcCCcEE
Q 014006 84 AIRF------EDRTSERTLIKYLTDGVLLREI-LSNPDLSPYSVIILDEAHERSLNT-DIL--LGLVKRLVNLRASKLKI 153 (432)
Q Consensus 84 ~~~~------~~~~~~~~~i~v~T~~~l~~~l-~~~~~l~~~~~vViDE~h~~~~~~-~~~--~~~l~~~~~~~~~~~~i 153 (432)
.... ........+++|+||+++.... .......++++|||||||+..-+. ++. ...+..+....+. .++
T Consensus 99 ~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~-~~~ 177 (607)
T PRK11057 99 QTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPT-LPF 177 (607)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCC-CcE
Confidence 1110 1112345789999999987432 222234579999999999633221 121 1224455555554 899
Q ss_pred EEEecccChHH---HHhhcc-CCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHH
Q 014006 154 LITSATLDGEK---VSKFFS-NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (432)
Q Consensus 154 i~~SAT~~~~~---~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~ 229 (432)
+++|||++... +...+. ..+.+.......+ ...+........ ...+........++++||||+|+++|+.+
T Consensus 178 v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~-nl~~~v~~~~~~----~~~l~~~l~~~~~~~~IIFc~tr~~~e~l 252 (607)
T PRK11057 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYTLVEKFKP----LDQLMRYVQEQRGKSGIIYCNSRAKVEDT 252 (607)
T ss_pred EEEecCCChhHHHHHHHHhCCCCeEEEECCCCCC-cceeeeeeccch----HHHHHHHHHhcCCCCEEEEECcHHHHHHH
Confidence 99999998754 333332 2222222211111 111111111111 22233333445677999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCC
Q 014006 230 VSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPS 309 (432)
Q Consensus 230 ~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~ 309 (432)
+..|.+ .++.+..+||+|++++|.++++.|++|..+|||||+++++|||+|+|++|||+|+|+
T Consensus 253 a~~L~~----------~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~------- 315 (607)
T PRK11057 253 AARLQS----------RGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPR------- 315 (607)
T ss_pred HHHHHh----------CCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCC-------
Confidence 999987 478899999999999999999999999999999999999999999999999998865
Q ss_pred CCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccch
Q 014006 310 SGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (432)
Q Consensus 310 ~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~ 349 (432)
|.++|+||+|||||. .+|.|+.+|+..+.
T Consensus 316 -----------s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~ 345 (607)
T PRK11057 316 -----------NIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (607)
T ss_pred -----------CHHHHHHHhhhccCCCCCceEEEEeCHHHH
Confidence 778999999999999 68999999988764
No 42
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-42 Score=302.95 Aligned_cols=317 Identities=19% Similarity=0.194 Sum_probs=246.1
Q ss_pred hhHHHHHHHHh--cCCEEEEEcCCCCCHH-HHHHHHHhhcCC-CCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeee
Q 014006 8 QYEETIVETVE--QNPVVVVIGETGSGKS-TQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (432)
Q Consensus 8 ~~q~~i~~~i~--~~~~~ii~apTGsGKT-~~~~~~~~~~~~-~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~ 83 (432)
..|+.+++.+. ..+++|.++..|+||| +++..++..... ......+|+.|+|+||.|..+.+.+ .|...+....|
T Consensus 115 kIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~e-MGKf~~ita~y 193 (477)
T KOG0332|consen 115 KIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEE-MGKFTELTASY 193 (477)
T ss_pred hHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHH-hcCceeeeEEE
Confidence 56777888776 4679999999999999 555556555433 3345788999999999999887644 45444666667
Q ss_pred eeeecccCC---CCceEEEcCHHHHHHHHhc--CCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q 014006 84 AIRFEDRTS---ERTLIKYLTDGVLLREILS--NPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (432)
Q Consensus 84 ~~~~~~~~~---~~~~i~v~T~~~l~~~l~~--~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SA 158 (432)
.++...... -..+|++.|||.+.+++.. .-.++.+.++|+|||+ .+++..-+.+.--++....|++.|++++||
T Consensus 194 air~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD-~Mi~tqG~~D~S~rI~~~lP~~~QllLFSA 272 (477)
T KOG0332|consen 194 AIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD-VMIDTQGFQDQSIRIMRSLPRNQQLLLFSA 272 (477)
T ss_pred EecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchh-hhhhcccccccchhhhhhcCCcceEEeeec
Confidence 666653333 3478999999999999865 3378999999999999 677776555555666677777799999999
Q ss_pred ccChHH---HHhhccCCCeeecCCC---CCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHH
Q 014006 159 TLDGEK---VSKFFSNCPTLNVPGK---LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (432)
Q Consensus 159 T~~~~~---~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~ 232 (432)
|..... ..+...+++.+.+..+ ..+++.+|......+. ....+..++..-.-|+.+|||.|++.|..++..
T Consensus 273 Tf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~---K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~ 349 (477)
T KOG0332|consen 273 TFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDD---KYQALVNLYGLLTIGQSIIFCHTKATAMWLYEE 349 (477)
T ss_pred hhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhh---HHHHHHHHHhhhhhhheEEEEeehhhHHHHHHH
Confidence 997643 4456677777766553 4556666655544433 344444455445568999999999999999999
Q ss_pred HHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCC
Q 014006 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGM 312 (432)
Q Consensus 233 L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~ 312 (432)
+.. .|+.+..+||+|.-++|..+++.|+.|..+|||+|++++||||++.|++|||||+|-... .
T Consensus 350 m~~----------~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~--~---- 413 (477)
T KOG0332|consen 350 MRA----------EGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYT--G---- 413 (477)
T ss_pred HHh----------cCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccC--C----
Confidence 988 489999999999999999999999999999999999999999999999999999985222 1
Q ss_pred ccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 313 YSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 313 ~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
--+++.|+||+||+||. +.|.++.|+..++-.+
T Consensus 414 ------~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~ 447 (477)
T KOG0332|consen 414 ------EPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMN 447 (477)
T ss_pred ------CCCHHHHHHHhcccccccccceEEEeecccCcHH
Confidence 13788999999999999 7899999986654433
No 43
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3.5e-41 Score=340.98 Aligned_cols=408 Identities=22% Similarity=0.265 Sum_probs=268.4
Q ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHH--HHhCCccCCeeeeee
Q 014006 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA--QELGVRLGEEVGYAI 85 (432)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~--~~~~~~~~~~~g~~~ 85 (432)
++|.++...+.+++|++|++|||||||.++...+.......+.++++++|+++||.|.++++. +.+|.+++..+|. .
T Consensus 35 ~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD-~ 113 (766)
T COG1204 35 PQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGD-Y 113 (766)
T ss_pred HHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCC-c
Confidence 345555556667899999999999999554444443333336799999999999999999997 6788888777772 2
Q ss_pred eecccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHH----HHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 86 RFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTD----ILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 86 ~~~~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~----~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
........+++|+|+|||.+-..+++.. ++.++++|||||+|. +..+ .+..++.+.....+. .|++++|||+
T Consensus 114 ~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~--l~d~~RG~~lE~iv~r~~~~~~~-~rivgLSATl 190 (766)
T COG1204 114 DLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHL--LGDRTRGPVLESIVARMRRLNEL-IRIVGLSATL 190 (766)
T ss_pred ccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeee--cCCcccCceehhHHHHHHhhCcc-eEEEEEeeec
Confidence 2222334779999999999998887766 789999999999994 3333 355556666655544 8999999999
Q ss_pred C-hHHHHhhccCCCeeecCCCCCce--------eEEeCCCCC----cchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHH
Q 014006 161 D-GEKVSKFFSNCPTLNVPGKLYPV--------EILHSKERP----TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIE 227 (432)
Q Consensus 161 ~-~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~ 227 (432)
+ ...+++|++.... ....++.+. ......... ..........+.... ..++++||||+|++.+.
T Consensus 191 pN~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~ 267 (766)
T COG1204 191 PNAEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESL--AEGGQVLVFVHSRKEAE 267 (766)
T ss_pred CCHHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHH--hcCCeEEEEEecCchHH
Confidence 5 4779999965433 333322221 111111111 112223333333332 56789999999999999
Q ss_pred HHHHHHHHHHhhc---------c--CC----------------CCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEee
Q 014006 228 KLVSKLEDKIRSL---------D--EG----------------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST 280 (432)
Q Consensus 228 ~~~~~L~~~~~~~---------~--~~----------------~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT 280 (432)
..++.+....... . .. .+...++++||+||+.++|..+++.|+.|+++|||||
T Consensus 268 ~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~T 347 (766)
T COG1204 268 KTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVST 347 (766)
T ss_pred HHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEec
Confidence 9999998532210 0 00 1123468899999999999999999999999999999
Q ss_pred cCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC---CCCeEEEecCccchhh---cCC
Q 014006 281 NIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPSTVYHD---EFL 354 (432)
Q Consensus 281 ~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~---~~G~~~~l~~~~~~~~---~~~ 354 (432)
++++.|+|.|.-++||- | ...|++..| ...++..+++|++|||||. .-|..+.+.+..+... ...
T Consensus 348 pTLA~GVNLPA~~VIIk-~---~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~ 418 (766)
T COG1204 348 PTLAAGVNLPARTVIIK-D---TRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELY 418 (766)
T ss_pred hHHhhhcCCcceEEEEe-e---eEEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHh
Confidence 99999999996666663 3 345666333 4677999999999999999 3467776663322221 122
Q ss_pred CCCCCccccCCc------hHHHHHHhhCCCCC--Cccccc---cCCCC------CCHHHHHHHHHHHHHcc-CCCCCC--
Q 014006 355 DVTVPEIQRSSL------AGSVLYLKSLDLSD--INVLKF---DFLDP------PSSESLEDALKQLYLID-AIDENG-- 414 (432)
Q Consensus 355 ~~~~~~i~~~~l------~~~~l~l~~~~~~~--~~~~~~---~~~~~------p~~~~l~~~~~~L~~~g-~i~~~~-- 414 (432)
....|+...+.| ...++.+.+.+-.- .....| .|..+ -....+..++..|.+.+ .++.+.
T Consensus 419 ~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~ 498 (766)
T COG1204 419 IQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWEA 498 (766)
T ss_pred hccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeeccccc
Confidence 333333321111 11111111111000 000000 00111 13456788999999997 555432
Q ss_pred -CCCHHHHHhhcCCCCCC
Q 014006 415 -SITSIGRTMAGTSFFAL 431 (432)
Q Consensus 415 -~~t~lG~~~~~l~~~~~ 431 (432)
..|++|+.++++.++|.
T Consensus 499 ~~ate~g~~~s~~yi~~~ 516 (766)
T COG1204 499 LHATELGKLVSRLYIDPE 516 (766)
T ss_pred cchhHHHHHhhhccCCHH
Confidence 78999999999999874
No 44
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4.6e-41 Score=350.51 Aligned_cols=313 Identities=20% Similarity=0.216 Sum_probs=213.6
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhcC------CCCCcEEEecccchhhhHHHHHHHHH------
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHG------YTKSGIIGVTQPRRVAAVSVARRVAQ------ 71 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~~------~~~~~~vl~~~P~~~l~~q~~~~~~~------ 71 (432)
.+++|.++++.+.+|++++++|||||||| ++++.+..... ...+.+++++.|+++|++|+++++.+
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999 33333322111 12356899999999999999886532
Q ss_pred -Hh---CCc-----cCCeeeeeeeecc--cCCCCceEEEcCHHHHHHHHhcCC---CCCCCcEEEEeCCCcCCCCH---H
Q 014006 72 -EL---GVR-----LGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNT---D 134 (432)
Q Consensus 72 -~~---~~~-----~~~~~g~~~~~~~--~~~~~~~i~v~T~~~l~~~l~~~~---~l~~~~~vViDE~h~~~~~~---~ 134 (432)
.. +.. ++...|.....+. .....++|+++||+++..++.+.. .+.++++|||||+|+ ..+. .
T Consensus 113 ~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~-l~~~~RG~ 191 (876)
T PRK13767 113 EIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHS-LAENKRGV 191 (876)
T ss_pred HHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhh-hccCccHH
Confidence 11 222 2222232111111 122467999999999976664332 578999999999994 4432 2
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEecccCh-HHHHhhccCC-------CeeecCC---CCCceeEEeCC-----CCCcchHH
Q 014006 135 ILLGLVKRLVNLRASKLKILITSATLDG-EKVSKFFSNC-------PTLNVPG---KLYPVEILHSK-----ERPTSYLE 198 (432)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~ii~~SAT~~~-~~~~~~~~~~-------~~i~~~~---~~~~~~~~~~~-----~~~~~~~~ 198 (432)
.+...+.++....+...|+|++|||+++ +.+++|+... ++..+.. +.......... ........
T Consensus 192 ~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~ 271 (876)
T PRK13767 192 HLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISE 271 (876)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHH
Confidence 3444456666555446899999999954 6678887542 1111111 11222211110 00111112
Q ss_pred HHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEE
Q 014006 199 SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIV 278 (432)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilv 278 (432)
.....+.... ...+++||||||++.|+.++..|.+..... ..+..+.+|||+|++++|..+++.|++|.++|||
T Consensus 272 ~l~~~L~~~i--~~~~~~LVF~nTr~~ae~la~~L~~~~~~~----~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLV 345 (876)
T PRK13767 272 ALYETLHELI--KEHRTTLIFTNTRSGAERVLYNLRKRFPEE----YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVV 345 (876)
T ss_pred HHHHHHHHHH--hcCCCEEEEeCCHHHHHHHHHHHHHhchhh----ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 2223333332 235799999999999999999998753211 1246789999999999999999999999999999
Q ss_pred eecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-C---CCeEEEe
Q 014006 279 STNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-R---PGKCYRL 343 (432)
Q Consensus 279 aT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~---~G~~~~l 343 (432)
||+++++|||+|++++||++|.|+ |.++|+||+|||||. + .|.++..
T Consensus 346 aTs~Le~GIDip~Vd~VI~~~~P~------------------sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 346 SSTSLELGIDIGYIDLVVLLGSPK------------------SVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred ECChHHhcCCCCCCcEEEEeCCCC------------------CHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 999999999999999999988765 778999999999997 2 3666654
No 45
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.2e-42 Score=319.20 Aligned_cols=308 Identities=17% Similarity=0.142 Sum_probs=221.8
Q ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhc-CC--------C--CCcEEEecccchhhhHHHHHHHHHHhCC
Q 014006 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH-GY--------T--KSGIIGVTQPRRVAAVSVARRVAQELGV 75 (432)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~-~~--------~--~~~~vl~~~P~~~l~~q~~~~~~~~~~~ 75 (432)
++|.-.++.+..|++++++|+|||||| .++.+++... .. . ..+.++++.|||+|+.|++.+..++...
T Consensus 99 pvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~ 178 (482)
T KOG0335|consen 99 PVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYL 178 (482)
T ss_pred cceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhccc
Confidence 466777889999999999999999999 4444444332 11 1 2368999999999999999987666543
Q ss_pred ccC---Ceeeeeee--ecccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCC-HHHHHHHHHHHHhhhc
Q 014006 76 RLG---EEVGYAIR--FEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLN-TDILLGLVKRLVNLRA 148 (432)
Q Consensus 76 ~~~---~~~g~~~~--~~~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~-~~~~~~~l~~~~~~~~ 148 (432)
... ...|.... ........++|+++|||+|.+++-... .+.+++++|+|||| +++| ++|... ++++.....
T Consensus 179 s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~-Ir~iv~~~~ 256 (482)
T KOG0335|consen 179 SGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQ-IRKIVEQLG 256 (482)
T ss_pred ccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchH-Hhhhhcccccc-HHHHhcccC
Confidence 322 22221110 112234679999999999999996555 89999999999999 9999 777666 666655442
Q ss_pred ----CCcEEEEEecccChHH--HH-hhccC-CCeeecC---CCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCC---
Q 014006 149 ----SKLKILITSATLDGEK--VS-KFFSN-CPTLNVP---GKLYPVEILHSKERPTSYLESALKTAIDIHVREPEG--- 214 (432)
Q Consensus 149 ----~~~~ii~~SAT~~~~~--~~-~~~~~-~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 214 (432)
++.|.++||||.|.+. ++ .|+.+ ...+.+. ...-.+..........+.....++.+.........+
T Consensus 257 ~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~ 336 (482)
T KOG0335|consen 257 MPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPK 336 (482)
T ss_pred CCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcc
Confidence 3689999999998754 33 33333 2222222 111111111111111121122222211111011233
Q ss_pred --CEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCe
Q 014006 215 --DVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGV 292 (432)
Q Consensus 215 --~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v 292 (432)
.++|||.|++.|..++.+|.. .++....+||..++.+|.+.++.|++|+..++|||++++||+|+|+|
T Consensus 337 ~e~tlvFvEt~~~~d~l~~~l~~----------~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V 406 (482)
T KOG0335|consen 337 WEKTLVFVETKRGADELAAFLSS----------NGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNV 406 (482)
T ss_pred cceEEEEeeccchhhHHHHHHhc----------CCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCC
Confidence 899999999999999999987 58888999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecC
Q 014006 293 VYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYP 345 (432)
Q Consensus 293 ~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~ 345 (432)
++||+|++|. +..+|+||+||+||. ..|.+..|+.
T Consensus 407 ~hVInyDmP~------------------d~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 407 KHVINYDMPA------------------DIDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred ceeEEeecCc------------------chhhHHHhccccccCCCCceeEEEec
Confidence 9999999877 455999999999999 5799999997
No 46
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-41 Score=312.06 Aligned_cols=343 Identities=18% Similarity=0.186 Sum_probs=239.6
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhc------CCCCCcEEEecccchhhhHHHHHHHHHHhCCcc
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRH------GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRL 77 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~------~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~ 77 (432)
..+.|.+.++.+.+|++++|.++|||||| +++|.+-... ....|.-+++++|||+||.|++..+.+......
T Consensus 160 pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~h 239 (708)
T KOG0348|consen 160 PTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFH 239 (708)
T ss_pred cchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCce
Confidence 35678899999999999999999999999 4555443322 224567899999999999999998877665322
Q ss_pred CCeeeeeeeecccC------CCCceEEEcCHHHHHHHHhcCC--CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhh--
Q 014006 78 GEEVGYAIRFEDRT------SERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-- 147 (432)
Q Consensus 78 ~~~~g~~~~~~~~~------~~~~~i~v~T~~~l~~~l~~~~--~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~-- 147 (432)
-..-|+-...+.+. ..+.+|+++|||+|++++.+.. .+++++++|+||+| +.++.+|-.. +..++...
T Consensus 240 WIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaD-rlleLGfekd-it~Il~~v~~ 317 (708)
T KOG0348|consen 240 WIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEAD-RLLELGFEKD-ITQILKAVHS 317 (708)
T ss_pred EEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchh-HHHhccchhh-HHHHHHHHhh
Confidence 22223333333333 3678999999999999997765 78899999999999 8888888555 22222221
Q ss_pred -----------cCCcEEEEEecccChHH--HHhh-ccCCCeeecCCCC-------------C---------------cee
Q 014006 148 -----------ASKLKILITSATLDGEK--VSKF-FSNCPTLNVPGKL-------------Y---------------PVE 185 (432)
Q Consensus 148 -----------~~~~~ii~~SAT~~~~~--~~~~-~~~~~~i~~~~~~-------------~---------------~~~ 185 (432)
|...|-+++|||++..+ +++. +.++..+..+... . .+.
T Consensus 318 ~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~ 397 (708)
T KOG0348|consen 318 IQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLL 397 (708)
T ss_pred ccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhh
Confidence 12367899999997643 4433 2333333311100 0 001
Q ss_pred EEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhc----cC--------CCCCCeEEEEe
Q 014006 186 ILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL----DE--------GSCMDAVILPL 253 (432)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~----~~--------~~~~~~~~~~~ 253 (432)
..|...+..-.+-.....+..........+++||+++.+.++--+..+......- +. ....+..++-+
T Consensus 398 qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rL 477 (708)
T KOG0348|consen 398 QRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRL 477 (708)
T ss_pred hceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEe
Confidence 1222222233334444555555656666799999999999999999888765431 10 01235568899
Q ss_pred cCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccC
Q 014006 254 HGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG 333 (432)
Q Consensus 254 h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaG 333 (432)
||+|++++|..+++.|......||+|||+++||+|+|+|++||+|+-|. +.++|+||+||+.
T Consensus 478 HGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~------------------s~adylHRvGRTA 539 (708)
T KOG0348|consen 478 HGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPF------------------STADYLHRVGRTA 539 (708)
T ss_pred cCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCC------------------CHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999977544 8889999999999
Q ss_pred CC-CCCeEEEecC--ccchhhcCCCCCCCccccCCchHH
Q 014006 334 RT-RPGKCYRLYP--STVYHDEFLDVTVPEIQRSSLAGS 369 (432)
Q Consensus 334 R~-~~G~~~~l~~--~~~~~~~~~~~~~~~i~~~~l~~~ 369 (432)
|. +.|.++.+.. +.+|.+ ......+.+.+.++..+
T Consensus 540 RaG~kG~alLfL~P~Eaey~~-~l~~~~~~l~q~~~~~~ 577 (708)
T KOG0348|consen 540 RAGEKGEALLFLLPSEAEYVN-YLKKHHIMLLQFDMEIL 577 (708)
T ss_pred hccCCCceEEEecccHHHHHH-HHHhhcchhhccchhhh
Confidence 99 6788877664 445555 33333333555555443
No 47
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=9e-41 Score=338.09 Aligned_cols=301 Identities=19% Similarity=0.204 Sum_probs=213.9
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeee
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~ 83 (432)
..+.|+++++++.+|+++++++|||+||| +++|.++. ++.++++.|+++|+.|+.+.+.. ++..+....+
T Consensus 14 fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~-~gi~~~~~~s- 85 (591)
T TIGR01389 14 FRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRA-AGVAAAYLNS- 85 (591)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHH-cCCcEEEEeC-
Confidence 35689999999999999999999999999 44554431 34678889999999999888755 4544332222
Q ss_pred eeeec-------ccCCCCceEEEcCHHHHHHHH-hcCCCCCCCcEEEEeCCCcCCCCH-HHHH--HHHHHHHhhhcCCcE
Q 014006 84 AIRFE-------DRTSERTLIKYLTDGVLLREI-LSNPDLSPYSVIILDEAHERSLNT-DILL--GLVKRLVNLRASKLK 152 (432)
Q Consensus 84 ~~~~~-------~~~~~~~~i~v~T~~~l~~~l-~~~~~l~~~~~vViDE~h~~~~~~-~~~~--~~l~~~~~~~~~~~~ 152 (432)
..... .......+++++||+++.... .......++++|||||||+...+. ++.. ..+..+....+. .+
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~-~~ 164 (591)
T TIGR01389 86 TLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQ-VP 164 (591)
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCC-CC
Confidence 11111 112356789999999986433 222245789999999999743222 2221 123444444554 56
Q ss_pred EEEEecccChHH---HHhhccC--CCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHH
Q 014006 153 ILITSATLDGEK---VSKFFSN--CPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIE 227 (432)
Q Consensus 153 ii~~SAT~~~~~---~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~ 227 (432)
++++|||++... +..+++- +..+...... ....+........ ...+........++++||||+|+++++
T Consensus 165 vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r--~nl~~~v~~~~~~----~~~l~~~l~~~~~~~~IIf~~sr~~~e 238 (591)
T TIGR01389 165 RIALTATADAETRQDIRELLRLADANEFITSFDR--PNLRFSVVKKNNK----QKFLLDYLKKHRGQSGIIYASSRKKVE 238 (591)
T ss_pred EEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCC--CCcEEEEEeCCCH----HHHHHHHHHhcCCCCEEEEECcHHHHH
Confidence 999999998754 4555532 2222211111 1111111111111 122333333344679999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeec
Q 014006 228 KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN 307 (432)
Q Consensus 228 ~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~ 307 (432)
.++..|.. .++.+..+||+|+.++|..+++.|.+|.++|||||+++++|||+|+|++||++++|+
T Consensus 239 ~la~~L~~----------~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~----- 303 (591)
T TIGR01389 239 ELAERLES----------QGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPG----- 303 (591)
T ss_pred HHHHHHHh----------CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCC-----
Confidence 99999976 478889999999999999999999999999999999999999999999999998766
Q ss_pred CCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccch
Q 014006 308 PSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (432)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~ 349 (432)
|.++|+||+|||||. .+|.|+.+|+..+.
T Consensus 304 -------------s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~ 333 (591)
T TIGR01389 304 -------------NLESYYQEAGRAGRDGLPAEAILLYSPADI 333 (591)
T ss_pred -------------CHHHHhhhhccccCCCCCceEEEecCHHHH
Confidence 778999999999999 58999999987764
No 48
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-42 Score=305.87 Aligned_cols=311 Identities=20% Similarity=0.216 Sum_probs=236.2
Q ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhcC------CCCCcEEEecccchhhhHHHHHHHHHHh--CCcc
Q 014006 8 QYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHG------YTKSGIIGVTQPRRVAAVSVARRVAQEL--GVRL 77 (432)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~~------~~~~~~vl~~~P~~~l~~q~~~~~~~~~--~~~~ 77 (432)
+.|.++++.+++|.+++.+|.||+||| .++|.++.... ...+..++++.||++|+.|+.-...+.. +...
T Consensus 245 PIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ks 324 (629)
T KOG0336|consen 245 PIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKS 324 (629)
T ss_pred cchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcce
Confidence 345667888999999999999999999 45554444322 2345689999999999999977764432 3333
Q ss_pred CCeeeeeeeecc--cCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEE
Q 014006 78 GEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (432)
Q Consensus 78 ~~~~g~~~~~~~--~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii 154 (432)
....|.+.+.+. ....+..|+++|||+|.++.+.+. .+..+.++|+|||| +++|++|-.++-+.++..+|+ .|++
T Consensus 325 vc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRPD-Rqtv 402 (629)
T KOG0336|consen 325 VCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRPD-RQTV 402 (629)
T ss_pred EEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCCc-ceee
Confidence 333443433332 234678999999999999988776 89999999999999 999999999877888888886 9999
Q ss_pred EEecccChHH---HHhhccCCCeeecCCC----CCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHH
Q 014006 155 ITSATLDGEK---VSKFFSNCPTLNVPGK----LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIE 227 (432)
Q Consensus 155 ~~SAT~~~~~---~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~ 227 (432)
+.|||.|..+ ...|++++-++.+..- ...++..+......+.+ ........ ......++||||.++..|.
T Consensus 403 mTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~-~~~~~f~~--~ms~ndKvIiFv~~K~~AD 479 (629)
T KOG0336|consen 403 MTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKL-EIVQFFVA--NMSSNDKVIIFVSRKVMAD 479 (629)
T ss_pred eecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHH-HHHHHHHH--hcCCCceEEEEEechhhhh
Confidence 9999998754 4567765544443321 12233333222222222 11111111 1345669999999999998
Q ss_pred HHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeec
Q 014006 228 KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN 307 (432)
Q Consensus 228 ~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~ 307 (432)
.+...+.- .++..-.+||+-.+.+|+..++.|+.|..+||||||+++||+|+++|++|+|||+|.
T Consensus 480 ~LSSd~~l----------~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~----- 544 (629)
T KOG0336|consen 480 HLSSDFCL----------KGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPR----- 544 (629)
T ss_pred hccchhhh----------cccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCc-----
Confidence 88877654 478888899999999999999999999999999999999999999999999999977
Q ss_pred CCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 308 PSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
..+.|+||+||+||+ +.|..+.+++..++..
T Consensus 545 -------------nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~ 576 (629)
T KOG0336|consen 545 -------------NIEEYVHRVGRTGRAGRTGTSISFLTRNDWSM 576 (629)
T ss_pred -------------cHHHHHHHhcccccCCCCcceEEEEehhhHHH
Confidence 667999999999999 7899999999888754
No 49
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=6e-40 Score=327.67 Aligned_cols=368 Identities=21% Similarity=0.226 Sum_probs=259.0
Q ss_pred hhhHHHHHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhcCC-----CCCcEEEecccchhhhHHHHHHH---HHHhCCc
Q 014006 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGY-----TKSGIIGVTQPRRVAAVSVARRV---AQELGVR 76 (432)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~~~-----~~~~~vl~~~P~~~l~~q~~~~~---~~~~~~~ 76 (432)
.+.|.++++.+.+|++++|.|||||||| +++|.+...... ..+..++|+.|.|+|.+++.+++ .+.+|..
T Consensus 24 t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~ 103 (814)
T COG1201 24 TPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIE 103 (814)
T ss_pred CHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCc
Confidence 4689999999999999999999999999 566655444332 23468999999999999999886 4567777
Q ss_pred cCCeeeeeeeeccc--CCCCceEEEcCHHHHHHHHhcCC---CCCCCcEEEEeCCCcCCCCHH--H-HHHHHHHHHhhhc
Q 014006 77 LGEEVGYAIRFEDR--TSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNTD--I-LLGLVKRLVNLRA 148 (432)
Q Consensus 77 ~~~~~g~~~~~~~~--~~~~~~i~v~T~~~l~~~l~~~~---~l~~~~~vViDE~h~~~~~~~--~-~~~~l~~~~~~~~ 148 (432)
+...+|.....+.+ ....++|++.|||.|.-++.+.. .+.++++|||||+|+ ..+.+ . +.-.+.++....+
T Consensus 104 v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe-l~~sKRG~~Lsl~LeRL~~l~~ 182 (814)
T COG1201 104 VAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA-LAESKRGVQLALSLERLRELAG 182 (814)
T ss_pred cceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhh-hhccccchhhhhhHHHHHhhCc
Confidence 77777755444433 34678999999999987775533 799999999999996 22222 2 3333667766666
Q ss_pred CCcEEEEEeccc-ChHHHHhhccCC----CeeecCC-CCCceeEEeCCCCC---cchHHHHHHHHHHHHhcCCCCCEEEE
Q 014006 149 SKLKILITSATL-DGEKVSKFFSNC----PTLNVPG-KLYPVEILHSKERP---TSYLESALKTAIDIHVREPEGDVLIF 219 (432)
Q Consensus 149 ~~~~ii~~SAT~-~~~~~~~~~~~~----~~i~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~lvF 219 (432)
+.|.|++|||+ +++.+++|+.+. .++.+.. +...+++....... ..........+..+.+. ...+|||
T Consensus 183 -~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~--~~ttLIF 259 (814)
T COG1201 183 -DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKK--HRTTLIF 259 (814)
T ss_pred -ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhh--cCcEEEE
Confidence 69999999999 667799999754 3444443 33444443322221 12223344455554433 3499999
Q ss_pred eCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCC
Q 014006 220 MTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCG 299 (432)
Q Consensus 220 ~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~ 299 (432)
+|||..++.++..|++. ....+..|||+++.++|..++++|++|..+++|||+.+|.|||+.+|+.||+++
T Consensus 260 ~NTR~~aE~l~~~L~~~---------~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~ 330 (814)
T COG1201 260 TNTRSGAERLAFRLKKL---------GPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLG 330 (814)
T ss_pred EeChHHHHHHHHHHHHh---------cCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeC
Confidence 99999999999999985 347899999999999999999999999999999999999999999999999988
Q ss_pred cccceeecCCCCCccceEeeecHhhHHHhhcccCCC--CCCeEEEecCc-cchhhc--------CCCCCCCccccCCchH
Q 014006 300 YVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT--RPGKCYRLYPS-TVYHDE--------FLDVTVPEIQRSSLAG 368 (432)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~--~~G~~~~l~~~-~~~~~~--------~~~~~~~~i~~~~l~~ 368 (432)
-|+ +.+.+.||+||+|+. +..+.+.+... .+...+ --....+++..-.|+-
T Consensus 331 SP~------------------sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDV 392 (814)
T COG1201 331 SPK------------------SVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDV 392 (814)
T ss_pred CcH------------------HHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhH
Confidence 655 888999999999998 33444444333 111110 1122244555555554
Q ss_pred HHHHHhhCCCCC-Ccc--------ccccCCCCCCHHHHHHHHHHHHH
Q 014006 369 SVLYLKSLDLSD-INV--------LKFDFLDPPSSESLEDALKQLYL 406 (432)
Q Consensus 369 ~~l~l~~~~~~~-~~~--------~~~~~~~~p~~~~l~~~~~~L~~ 406 (432)
+.-++..+-+.. ..+ ...+|-+ -+.+.+++.++.|..
T Consensus 393 Laq~ivg~~~~~~~~~~~~y~~vrraypy~~-L~~e~f~~v~~~l~~ 438 (814)
T COG1201 393 LAQQIVGMALEKVWEVEEAYRVVRRAYPYAD-LSREDFRLVLRYLAG 438 (814)
T ss_pred HHHHHHHHHhhCcCCHHHHHHHHHhcccccc-CCHHHHHHHHHHHhh
Confidence 444443332211 001 0112322 246778888888888
No 50
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.9e-40 Score=319.96 Aligned_cols=301 Identities=19% Similarity=0.174 Sum_probs=219.4
Q ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeee
Q 014006 8 QYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAI 85 (432)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~ 85 (432)
.-|+++++.+.+++++++..|||+||| +++|.++. .+.++++.|..+|..++.+.+.+ .|.......+.-.
T Consensus 20 ~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~l~~-~Gi~A~~lnS~l~ 92 (590)
T COG0514 20 PGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQLEA-AGIRAAYLNSTLS 92 (590)
T ss_pred CCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHHHHH-cCceeehhhcccC
Confidence 458999999999999999999999999 78888776 34789999999999988887633 3433322222111
Q ss_pred eec------ccCCCCceEEEcCHHHHHHHHh-cCCCCCCCcEEEEeCCCc-----CCCCHHHHHHHHHHHHhhhcCCcEE
Q 014006 86 RFE------DRTSERTLIKYLTDGVLLREIL-SNPDLSPYSVIILDEAHE-----RSLNTDILLGLVKRLVNLRASKLKI 153 (432)
Q Consensus 86 ~~~------~~~~~~~~i~v~T~~~l~~~l~-~~~~l~~~~~vViDE~h~-----~~~~~~~~~~~l~~~~~~~~~~~~i 153 (432)
..+ .......+++|.+||++..-.. ....-.+++++||||||| +.|.+++.. +..+....+ ++++
T Consensus 93 ~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~--lg~l~~~~~-~~p~ 169 (590)
T COG0514 93 REERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRR--LGRLRAGLP-NPPV 169 (590)
T ss_pred HHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHH--HHHHHhhCC-CCCE
Confidence 111 1123457999999998863321 111356789999999999 345555544 566666666 4899
Q ss_pred EEEecccChHH---HHhhcc-C-CCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHH
Q 014006 154 LITSATLDGEK---VSKFFS-N-CPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEK 228 (432)
Q Consensus 154 i~~SAT~~~~~---~~~~~~-~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~ 228 (432)
+++|||.++.. +...+. + +.++....... ++.|......+...+.. .+.. ......+..||||.||+.++.
T Consensus 170 ~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRp--Ni~~~v~~~~~~~~q~~-fi~~-~~~~~~~~GIIYc~sRk~~E~ 245 (590)
T COG0514 170 LALTATATPRVRDDIREQLGLQDANIFRGSFDRP--NLALKVVEKGEPSDQLA-FLAT-VLPQLSKSGIIYCLTRKKVEE 245 (590)
T ss_pred EEEeCCCChHHHHHHHHHhcCCCcceEEecCCCc--hhhhhhhhcccHHHHHH-HHHh-hccccCCCeEEEEeeHHhHHH
Confidence 99999998764 333332 2 22332222111 12221111111111111 1111 224556689999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecC
Q 014006 229 LVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNP 308 (432)
Q Consensus 229 ~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~ 308 (432)
++++|.+ .++.+..|||||+.++|..+.++|.++..+|+|||.+++||||.|||++|||+++|+
T Consensus 246 ia~~L~~----------~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~------ 309 (590)
T COG0514 246 LAEWLRK----------NGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPG------ 309 (590)
T ss_pred HHHHHHH----------CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCC------
Confidence 9999998 489999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchh
Q 014006 309 SSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (432)
Q Consensus 309 ~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (432)
|.++|.|.+|||||. .+..|+.||++.+..
T Consensus 310 ------------s~EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 310 ------------SIESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred ------------CHHHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 888999999999999 789999999988754
No 51
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-40 Score=301.13 Aligned_cols=309 Identities=18% Similarity=0.207 Sum_probs=231.3
Q ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhc-------CCCCCcEEEecccchhhhHHHHHHHHHHh---C--
Q 014006 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH-------GYTKSGIIGVTQPRRVAAVSVARRVAQEL---G-- 74 (432)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~-------~~~~~~~vl~~~P~~~l~~q~~~~~~~~~---~-- 74 (432)
-.|+.+++.+.+|++++..|.|||||| +++.+++..+ ....+...++++||++|+.|++..+.+.. +
T Consensus 44 lIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~ 123 (569)
T KOG0346|consen 44 LIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKD 123 (569)
T ss_pred hhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHh
Confidence 368888999999999999999999999 4444444432 12346689999999999999998764432 2
Q ss_pred CccCCeeeeeee---ecccCCCCceEEEcCHHHHHHHHhcCC--CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC
Q 014006 75 VRLGEEVGYAIR---FEDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (432)
Q Consensus 75 ~~~~~~~g~~~~---~~~~~~~~~~i~v~T~~~l~~~l~~~~--~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~ 149 (432)
.+.. .+..+.. ......+.++|+|+||+.+++++..+. .+..++++|+|||| ..+..+|-.+ ++.+....|+
T Consensus 124 lr~~-nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEAD-LllsfGYeed-lk~l~~~LPr 200 (569)
T KOG0346|consen 124 LRAI-NLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEAD-LLLSFGYEED-LKKLRSHLPR 200 (569)
T ss_pred hhhh-hhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhh-hhhhcccHHH-HHHHHHhCCc
Confidence 1111 1110111 112234779999999999999997765 78899999999999 5677777776 7888888888
Q ss_pred CcEEEEEecccChHH--HHhhccC-CCeeecCCCCCc----eeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 014006 150 KLKILITSATLDGEK--VSKFFSN-CPTLNVPGKLYP----VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTG 222 (432)
Q Consensus 150 ~~~ii~~SAT~~~~~--~~~~~~~-~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t 222 (432)
..|.++||||++.+. +++.+.+ +.++.......+ +..++......+.+. .+..++ ...--.|++|||+||
T Consensus 201 ~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfl-llyall--KL~LI~gKsliFVNt 277 (569)
T KOG0346|consen 201 IYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFL-LLYALL--KLRLIRGKSLIFVNT 277 (569)
T ss_pred hhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHH-HHHHHH--HHHHhcCceEEEEec
Confidence 899999999997654 6666654 444455443332 222333222222111 111111 123447899999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecC--------------------
Q 014006 223 QDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI-------------------- 282 (432)
Q Consensus 223 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~-------------------- 282 (432)
.+.+.++.-.|++ .++..+.++|.||.+.|..+++.|..|.++|+||||.
T Consensus 278 Idr~YrLkLfLeq----------FGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~ 347 (569)
T KOG0346|consen 278 IDRCYRLKLFLEQ----------FGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNP 347 (569)
T ss_pred hhhhHHHHHHHHH----------hCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCC
Confidence 9999999999988 4888999999999999999999999999999999992
Q ss_pred ---------------cccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCc
Q 014006 283 ---------------AETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPS 346 (432)
Q Consensus 283 ---------------~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~ 346 (432)
.+||||+.+|..|+|||+|. +..+|+||+||++|. .+|.+..++.+
T Consensus 348 kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~------------------t~~sYIHRvGRTaRg~n~GtalSfv~P 409 (569)
T KOG0346|consen 348 KNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPE------------------TVTSYIHRVGRTARGNNKGTALSFVSP 409 (569)
T ss_pred CCccccccccCchhchhccccchheeeeeecCCCC------------------chHHHHHhccccccCCCCCceEEEecc
Confidence 27999999999999999977 666999999999999 78999999877
Q ss_pred cchh
Q 014006 347 TVYH 350 (432)
Q Consensus 347 ~~~~ 350 (432)
.+..
T Consensus 410 ~e~~ 413 (569)
T KOG0346|consen 410 KEEF 413 (569)
T ss_pred hHHh
Confidence 6554
No 52
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-40 Score=304.06 Aligned_cols=310 Identities=22% Similarity=0.275 Sum_probs=236.8
Q ss_pred hhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhh------cCCCCCcEEEecccchhhhHHHHHHH---HHHhCCc
Q 014006 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHR------HGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVR 76 (432)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~------~~~~~~~~vl~~~P~~~l~~q~~~~~---~~~~~~~ 76 (432)
++.|..+++....|++++-.|-|||||| +++.+++.. +....+...++++|||+|+.|++... .+-+++.
T Consensus 247 tpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~ 326 (731)
T KOG0339|consen 247 TPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLR 326 (731)
T ss_pred CcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccce
Confidence 4568888999999999999999999999 444444332 23356778999999999999997654 4445666
Q ss_pred cCCeeeeeeeecccC--CCCceEEEcCHHHHHHHH-hcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEE
Q 014006 77 LGEEVGYAIRFEDRT--SERTLIKYLTDGVLLREI-LSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (432)
Q Consensus 77 ~~~~~g~~~~~~~~~--~~~~~i~v~T~~~l~~~l-~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~i 153 (432)
+....|+....+... ...+.|+|||||+|+++. +....+.+++++|+||++ |+++++|..+ ++.+......+.|.
T Consensus 327 ~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~q-VrSI~~hirpdrQt 404 (731)
T KOG0339|consen 327 VVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQ-VRSIKQHIRPDRQT 404 (731)
T ss_pred EEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHH-HHHHHhhcCCcceE
Confidence 666666555554333 367999999999999998 555699999999999999 9999999888 56665544445999
Q ss_pred EEEecccChHH---HHhhccCCCeeecCCC----CCce-eEEeCCCCCcchHHHHHHHHHH-HHhcCCCCCEEEEeCCHH
Q 014006 154 LITSATLDGEK---VSKFFSNCPTLNVPGK----LYPV-EILHSKERPTSYLESALKTAID-IHVREPEGDVLIFMTGQD 224 (432)
Q Consensus 154 i~~SAT~~~~~---~~~~~~~~~~i~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~lvF~~t~~ 224 (432)
++||||+.... ...++.++..+ +.+. ...+ +..+.-... +..+..+.. +......|++|+|+.-+.
T Consensus 405 llFsaTf~~kIe~lard~L~dpVrv-Vqg~vgean~dITQ~V~V~~s~----~~Kl~wl~~~L~~f~S~gkvlifVTKk~ 479 (731)
T KOG0339|consen 405 LLFSATFKKKIEKLARDILSDPVRV-VQGEVGEANEDITQTVSVCPSE----EKKLNWLLRHLVEFSSEGKVLIFVTKKA 479 (731)
T ss_pred EEeeccchHHHHHHHHHHhcCCeeE-EEeehhccccchhheeeeccCc----HHHHHHHHHHhhhhccCCcEEEEEeccC
Confidence 99999997643 44556543322 2211 0111 111111111 122222222 222355789999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccce
Q 014006 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR 304 (432)
Q Consensus 225 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~ 304 (432)
.+++++..|.- .++++..+||++.+.+|.+++.+|+.+...|+||||++++|+||+++..||++|+-+
T Consensus 480 ~~e~i~a~Lkl----------k~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ar-- 547 (731)
T KOG0339|consen 480 DAEEIAANLKL----------KGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFAR-- 547 (731)
T ss_pred CHHHHHHHhcc----------ccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccc--
Confidence 99999999976 489999999999999999999999999999999999999999999999999998765
Q ss_pred eecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 305 QYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 305 ~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
+...|.||+||+||. ..|.+|.|+++.+.+.
T Consensus 548 ----------------dIdththrigrtgRag~kGvayTlvTeKDa~f 579 (731)
T KOG0339|consen 548 ----------------DIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEF 579 (731)
T ss_pred ----------------hhHHHHHHhhhcccccccceeeEEechhhHHH
Confidence 667999999999999 6799999999987653
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.4e-39 Score=344.52 Aligned_cols=296 Identities=23% Similarity=0.216 Sum_probs=199.3
Q ss_pred EEcCCCCCHH--HHHHHHHhhcCC----------CCCcEEEecccchhhhHHHHHHHHHH---------------hCCcc
Q 014006 25 VIGETGSGKS--TQLSQILHRHGY----------TKSGIIGVTQPRRVAAVSVARRVAQE---------------LGVRL 77 (432)
Q Consensus 25 i~apTGsGKT--~~~~~~~~~~~~----------~~~~~vl~~~P~~~l~~q~~~~~~~~---------------~~~~~ 77 (432)
|+|||||||| ++++.+...... ..+.+++|+.|+++|++|+.+++... .+..+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 4799999999 444444332211 23568999999999999999887531 12333
Q ss_pred CCeeeeeeeecc--cCCCCceEEEcCHHHHHHHHhcC--CCCCCCcEEEEeCCCcCCCCHH---HHHHHHHHHHhhhcCC
Q 014006 78 GEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTD---ILLGLVKRLVNLRASK 150 (432)
Q Consensus 78 ~~~~g~~~~~~~--~~~~~~~i~v~T~~~l~~~l~~~--~~l~~~~~vViDE~h~~~~~~~---~~~~~l~~~~~~~~~~ 150 (432)
+..+|.....+. .....++|+++|||+|..++.+. ..++++++|||||+|+ ..+.+ .+...+.++....+.+
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~-L~g~kRG~~Lel~LeRL~~l~~~~ 159 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHA-VAGSKRGAHLALSLERLDALLHTS 159 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHH-hcccccccHHHHHHHHHHHhCCCC
Confidence 334442222221 12346899999999998877543 3789999999999994 44432 2444567776666666
Q ss_pred cEEEEEecccC-hHHHHhhccCC-Ceeec-CC--CCCceeEEeCCCCCc------------------chH-HHHHHHHHH
Q 014006 151 LKILITSATLD-GEKVSKFFSNC-PTLNV-PG--KLYPVEILHSKERPT------------------SYL-ESALKTAID 206 (432)
Q Consensus 151 ~~ii~~SAT~~-~~~~~~~~~~~-~~i~~-~~--~~~~~~~~~~~~~~~------------------~~~-~~~~~~~~~ 206 (432)
.|+|++|||++ .+.+++|+... ++..+ .. +..+++......... ..+ ......+..
T Consensus 160 ~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~ 239 (1490)
T PRK09751 160 AQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILD 239 (1490)
T ss_pred CeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHH
Confidence 89999999994 46788998643 22112 11 223333221111000 000 011111222
Q ss_pred HHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhcc-C---------------C-------CCCCeEEEEecCCCCHHHHh
Q 014006 207 IHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLD-E---------------G-------SCMDAVILPLHGSLPPEMQV 263 (432)
Q Consensus 207 ~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~-~---------------~-------~~~~~~~~~~h~~l~~~~r~ 263 (432)
.. ...+++||||||++.|+.++..|++...... . + ......+..|||+|++++|.
T Consensus 240 ~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 240 EV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 11 2357999999999999999999987532100 0 0 00123477899999999999
Q ss_pred ccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC--CCeEE
Q 014006 264 RVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR--PGKCY 341 (432)
Q Consensus 264 ~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~--~G~~~ 341 (432)
.+++.|++|++++||||+++++|||+++|++||++|.|. |.++|+||+|||||.. .+.++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~------------------sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPL------------------SVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCC------------------CHHHHHHHhCCCCCCCCCccEEE
Confidence 999999999999999999999999999999999988755 8889999999999983 34444
No 54
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.1e-40 Score=296.52 Aligned_cols=306 Identities=19% Similarity=0.214 Sum_probs=226.8
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhc--------CCCCCcEEEecccchhhhHHHHHHHHHHhC-----
Q 014006 10 EETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRH--------GYTKSGIIGVTQPRRVAAVSVARRVAQELG----- 74 (432)
Q Consensus 10 q~~i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~--------~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~----- 74 (432)
|-+=++.+..|++.|-.|-|||||| +.+|.++..+ ....|..-++++|.|+||.|.+.-+.+++.
T Consensus 197 QvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~ 276 (610)
T KOG0341|consen 197 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEA 276 (610)
T ss_pred eecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhc
Confidence 3334667789999999999999999 4455554432 235677889999999999999876544332
Q ss_pred ----CccCCeeeeee-eec-ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhh
Q 014006 75 ----VRLGEEVGYAI-RFE-DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (432)
Q Consensus 75 ----~~~~~~~g~~~-~~~-~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~ 147 (432)
.+....+|+.. +.. .......+|+|+|||+|.+++.... .+.-.+++++|||| |++|++|-.+ ++.++..+
T Consensus 277 g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEAD-RmiDmGFEdd-ir~iF~~F 354 (610)
T KOG0341|consen 277 GYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEAD-RMIDMGFEDD-IRTIFSFF 354 (610)
T ss_pred CChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHH-HHhhccchhh-HHHHHHHH
Confidence 23344444221 111 1224678999999999999997655 78888999999999 9999999887 78888877
Q ss_pred cCCcEEEEEecccChHHHHhhccC----CCeeecCCCC-CceeEEeCCCCCcchHHHHHH--HHHHHHhcCCCCCEEEEe
Q 014006 148 ASKLKILITSATLDGEKVSKFFSN----CPTLNVPGKL-YPVEILHSKERPTSYLESALK--TAIDIHVREPEGDVLIFM 220 (432)
Q Consensus 148 ~~~~~ii~~SAT~~~~~~~~~~~~----~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lvF~ 220 (432)
+...|.++||||+|.. ++.|... +..+.+.... ...++ ....+|+....+ .++... .....++||||
T Consensus 355 K~QRQTLLFSATMP~K-IQ~FAkSALVKPvtvNVGRAGAAsldV----iQevEyVkqEaKiVylLeCL-QKT~PpVLIFa 428 (610)
T KOG0341|consen 355 KGQRQTLLFSATMPKK-IQNFAKSALVKPVTVNVGRAGAASLDV----IQEVEYVKQEAKIVYLLECL-QKTSPPVLIFA 428 (610)
T ss_pred hhhhheeeeeccccHH-HHHHHHhhcccceEEecccccccchhH----HHHHHHHHhhhhhhhHHHHh-ccCCCceEEEe
Confidence 7779999999999865 4444332 2222222110 01110 011223322222 222222 33456999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCc
Q 014006 221 TGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (432)
Q Consensus 221 ~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~ 300 (432)
..+.++..++.+|-- .++.++.+|||-.+++|...++.|+.|+.+||||||+++.|+|+|++.+|||||+
T Consensus 429 EkK~DVD~IhEYLLl----------KGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDM 498 (610)
T KOG0341|consen 429 EKKADVDDIHEYLLL----------KGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDM 498 (610)
T ss_pred ccccChHHHHHHHHH----------ccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCC
Confidence 999999999999865 4899999999999999999999999999999999999999999999999999998
Q ss_pred ccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
|. ..++|+||+||+||. ..|.+-.++++...+.
T Consensus 499 P~------------------eIENYVHRIGRTGRsg~~GiATTfINK~~~es 532 (610)
T KOG0341|consen 499 PE------------------EIENYVHRIGRTGRSGKTGIATTFINKNQEES 532 (610)
T ss_pred hH------------------HHHHHHHHhcccCCCCCcceeeeeecccchHH
Confidence 65 667999999999999 6799999998775544
No 55
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=1.1e-39 Score=316.03 Aligned_cols=423 Identities=35% Similarity=0.545 Sum_probs=358.2
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCC----CCcEEEecccchhhhHHHHHHHHHHhCCccC
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYT----KSGIIGVTQPRRVAAVSVARRVAQELGVRLG 78 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~----~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~ 78 (432)
+||+..+.+++++++.+++.++|.+.||+|||+.+.+.++..-.. ....+.+.+|++..+..++++++++.+..++
T Consensus 376 ~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g 455 (1282)
T KOG0921|consen 376 ELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVG 455 (1282)
T ss_pred hCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhc
Confidence 699999999999999999999999999999998887777654221 1236788999999999999999999999999
Q ss_pred CeeeeeeeecccCC-CCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 79 EEVGYAIRFEDRTS-ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 79 ~~~g~~~~~~~~~~-~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
.++||.+++++... +...|.+||-|.+++.+.+. +..++++++||.|++..+.++++-+++.+....+. .++++||
T Consensus 456 ~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g--lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~d-l~v~lms 532 (1282)
T KOG0921|consen 456 ETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG--LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRD-LRVVLMS 532 (1282)
T ss_pred ccccccccccccccccccceeeeccchhhhhhhhc--ccccccccchhhhhhccchHHHHHHHHhhhccchh-hhhhhhh
Confidence 99999999987775 56788899999999888654 57789999999999999999999999999887775 9999999
Q ss_pred cccChHHHHhhccCCCeeecCCCCCceeEEeCCCC----------------------Cc---c-------------h---
Q 014006 158 ATLDGEKVSKFFSNCPTLNVPGKLYPVEILHSKER----------------------PT---S-------------Y--- 196 (432)
Q Consensus 158 AT~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------------------~~---~-------------~--- 196 (432)
||++.+.+..||...+.+.+.++.+|++.++...- .. + +
T Consensus 533 atIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~ 612 (1282)
T KOG0921|consen 533 ATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNES 612 (1282)
T ss_pred cccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcch
Confidence 99999999999999888888887777654331110 00 0 0
Q ss_pred -------------HHHHHHH-HHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHH
Q 014006 197 -------------LESALKT-AIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQ 262 (432)
Q Consensus 197 -------------~~~~~~~-~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r 262 (432)
.....+. +..+....-.+-++||.+..+.+..+..++......- ....+.+++.|+.++..++
T Consensus 613 ~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg---~~~~y~ilp~Hsq~~~~eq 689 (1282)
T KOG0921|consen 613 TRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFG---QANKYEILPLHSQLTSQEQ 689 (1282)
T ss_pred hhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhc---cchhcccccchhhcccHhh
Confidence 0011111 1222234456899999999999999999876642211 1246778999999999999
Q ss_pred hccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCCCeEEE
Q 014006 263 VRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYR 342 (432)
Q Consensus 263 ~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~ 342 (432)
.++++....|..++|++|++++..+++.++.+|||.+..+...|.+.+.+......|.|+-+..||.||+||.++|.|++
T Consensus 690 rkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~ 769 (1282)
T KOG0921|consen 690 RKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFH 769 (1282)
T ss_pred hhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccchhhcCCCCCCCccccCCchHHHHHHhhCCCCCCccccccCCCCCCHHHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 014006 343 LYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSSESLEDALKQLYLIDAIDENGSITSIGRT 422 (432)
Q Consensus 343 l~~~~~~~~~~~~~~~~~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~L~~~g~i~~~~~~t~lG~~ 422 (432)
+.+...|+. +..+..+++.+..+.+..+..+.+.+..+.....--+.||+.+++..+-..|.+++++|.++.+|++|+.
T Consensus 770 lcs~arF~~-l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~ 848 (1282)
T KOG0921|consen 770 LCSRARFEA-LEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRM 848 (1282)
T ss_pred ccHHHHHHH-HHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhh
Confidence 999999998 9999999999999999999888877766223334667899999999999999999999999999999999
Q ss_pred hhcCCCCCCC
Q 014006 423 MAGTSFFALP 432 (432)
Q Consensus 423 ~~~l~~~~~~ 432 (432)
++++|+.|++
T Consensus 849 la~l~iep~~ 858 (1282)
T KOG0921|consen 849 LARLPIEPRI 858 (1282)
T ss_pred hhhccCcccc
Confidence 9999998863
No 56
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-39 Score=297.00 Aligned_cols=316 Identities=19% Similarity=0.196 Sum_probs=215.4
Q ss_pred hhhhHHHHHHHHh---------cCCEEEEEcCCCCCHH-HHHHHHHhhcCC--CCCcEEEecccchhhhHHHHHHHHHHh
Q 014006 6 ILQYEETIVETVE---------QNPVVVVIGETGSGKS-TQLSQILHRHGY--TKSGIIGVTQPRRVAAVSVARRVAQEL 73 (432)
Q Consensus 6 ~~~~q~~i~~~i~---------~~~~~ii~apTGsGKT-~~~~~~~~~~~~--~~~~~vl~~~P~~~l~~q~~~~~~~~~ 73 (432)
.++.|.+++.++. ..++++|.|||||||| .++.++...+.. ....++++++|+++|+.|+++.+.+..
T Consensus 160 ~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~ 239 (620)
T KOG0350|consen 160 LFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLN 239 (620)
T ss_pred ccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhc
Confidence 3566777777763 3678999999999999 454455554432 234589999999999999999886554
Q ss_pred CCccCCeeeeeeeeccc-----------CCCCceEEEcCHHHHHHHHhcCC--CCCCCcEEEEeCCCcCCCCHHHHHHHH
Q 014006 74 GVRLGEEVGYAIRFEDR-----------TSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLV 140 (432)
Q Consensus 74 ~~~~~~~~g~~~~~~~~-----------~~~~~~i~v~T~~~l~~~l~~~~--~l~~~~~vViDE~h~~~~~~~~~~~~l 140 (432)
...|..++......+. ...+.+|+|+|||+|.+++.+.+ .+.+++++|||||| |+++..|.. |+
T Consensus 240 -~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rll~qsfQ~-Wl 316 (620)
T KOG0350|consen 240 -SGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RLLDQSFQE-WL 316 (620)
T ss_pred -cCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-HHHHHHHHH-HH
Confidence 3334444422221110 11245999999999999997554 89999999999999 887766522 22
Q ss_pred HHHHhhhc----------------------------------CCcEEEEEeccc--ChHHHHhhccCCC-eeecCCC---
Q 014006 141 KRLVNLRA----------------------------------SKLKILITSATL--DGEKVSKFFSNCP-TLNVPGK--- 180 (432)
Q Consensus 141 ~~~~~~~~----------------------------------~~~~ii~~SAT~--~~~~~~~~~~~~~-~i~~~~~--- 180 (432)
..+..... ...+.+.+|||+ ++..++++--+.| .+.+...
T Consensus 317 ~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ 396 (620)
T KOG0350|consen 317 DTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIG 396 (620)
T ss_pred HHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccce
Confidence 22211110 012356677776 3344555433333 3333321
Q ss_pred CC--ceeEEeCCCC-CcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCC
Q 014006 181 LY--PVEILHSKER-PTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSL 257 (432)
Q Consensus 181 ~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l 257 (432)
.| |....+.... ...+ .-..++......+..++|+|+++.+.+.+++..|.-.+.+ .+.++-.|.|++
T Consensus 397 ryslp~~l~~~~vv~~~~~---kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~------~~~~~s~~t~~l 467 (620)
T KOG0350|consen 397 RYSLPSSLSHRLVVTEPKF---KPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS------DNFKVSEFTGQL 467 (620)
T ss_pred eeecChhhhhceeeccccc---chHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhcc------ccchhhhhhhhh
Confidence 01 1000000000 0001 0112333333456679999999999999999999844433 456677799999
Q ss_pred CHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-C
Q 014006 258 PPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-R 336 (432)
Q Consensus 258 ~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~ 336 (432)
+...|.+.++.|..|.+++|||+|+++||||+.+|+.||||+.|. +.-+|+||+||+||+ +
T Consensus 468 ~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~------------------~~ktyVHR~GRTARAgq 529 (620)
T KOG0350|consen 468 NGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPA------------------SDKTYVHRAGRTARAGQ 529 (620)
T ss_pred hHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCc------------------hhhHHHHhhcccccccC
Confidence 999999999999999999999999999999999999999988654 667999999999999 7
Q ss_pred CCeEEEecCccchhh
Q 014006 337 PGKCYRLYPSTVYHD 351 (432)
Q Consensus 337 ~G~~~~l~~~~~~~~ 351 (432)
.|.||.+.++.+...
T Consensus 530 ~G~a~tll~~~~~r~ 544 (620)
T KOG0350|consen 530 DGYAITLLDKHEKRL 544 (620)
T ss_pred CceEEEeeccccchH
Confidence 899999997766543
No 57
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.4e-38 Score=299.28 Aligned_cols=313 Identities=16% Similarity=0.184 Sum_probs=252.0
Q ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHh-hcCCCCCcEEEecccchhhhHHHHHHHHH----HhCCccCCee
Q 014006 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILH-RHGYTKSGIIGVTQPRRVAAVSVARRVAQ----ELGVRLGEEV 81 (432)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~-~~~~~~~~~vl~~~P~~~l~~q~~~~~~~----~~~~~~~~~~ 81 (432)
+.|.++++.+..+-++||+|..|+||| .+....+. .........++++.|||+++.|+...+.+ +.|..+...+
T Consensus 50 kiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfI 129 (980)
T KOG4284|consen 50 KIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFI 129 (980)
T ss_pred chhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEe
Confidence 578889999999999999999999999 22211222 22233456889999999999999888754 3456777777
Q ss_pred eeeeeec-ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 82 GYAIRFE-DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 82 g~~~~~~-~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
|+..... ......++|+++|||++..+.-.+. ..+.++++|+|||| ..++.+.+.+.+..+....|...|++++|||
T Consensus 130 GGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD-kL~~t~sfq~~In~ii~slP~~rQv~a~SAT 208 (980)
T KOG4284|consen 130 GGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD-KLMDTESFQDDINIIINSLPQIRQVAAFSAT 208 (980)
T ss_pred cCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH-hhhchhhHHHHHHHHHHhcchhheeeEEecc
Confidence 7654333 3334678999999999999885554 88999999999999 6888888888899999999988999999999
Q ss_pred cChH---HHHhhccCCCeeecCCCC---CceeEEeCCCCC----cchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHH
Q 014006 160 LDGE---KVSKFFSNCPTLNVPGKL---YPVEILHSKERP----TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (432)
Q Consensus 160 ~~~~---~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~ 229 (432)
.|.. .+.+|+.++..+....+. +.++.++..... .+.+...+..+-+++..-+-.++||||+....|+.+
T Consensus 209 Yp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~ 288 (980)
T KOG4284|consen 209 YPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPI 288 (980)
T ss_pred CchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHH
Confidence 9864 488999988888877643 333333333222 234455666666777677778999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCC
Q 014006 230 VSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPS 309 (432)
Q Consensus 230 ~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~ 309 (432)
+.+|.. .|+.+.++.|.|++.+|..+++.++.-..+|||+||..+||||-++|+.|||.|-|
T Consensus 289 a~~L~s----------sG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p-------- 350 (980)
T KOG4284|consen 289 ATHLKS----------SGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAP-------- 350 (980)
T ss_pred HHHhhc----------cCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCC--------
Confidence 999987 59999999999999999999999999999999999999999999999999997754
Q ss_pred CCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccch
Q 014006 310 SGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (432)
Q Consensus 310 ~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~ 349 (432)
.+-.+|.||+|||||. ..|.++.++.....
T Consensus 351 ----------~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 351 ----------ADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred ----------cchHHHHHHhhhcccccccceeEEEeccchh
Confidence 3667999999999999 57999988855433
No 58
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.2e-37 Score=321.60 Aligned_cols=298 Identities=19% Similarity=0.204 Sum_probs=209.0
Q ss_pred hhhhHHHHHHHHhcC------CEEEEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCC---
Q 014006 6 ILQYEETIVETVEQN------PVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV--- 75 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~------~~~ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~--- 75 (432)
..+.|.++++.+.++ .+.+++|||||||| +++.+++... ..+.++++++||++||.|+++.+.+.++.
T Consensus 452 ~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al--~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i 529 (926)
T TIGR00580 452 ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAV--LDGKQVAVLVPTTLLAQQHFETFKERFANFPV 529 (926)
T ss_pred CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHH--HhCCeEEEEeCcHHHHHHHHHHHHHHhccCCc
Confidence 467899999998874 68999999999999 3333333222 23578999999999999999998776542
Q ss_pred ccCCeeeeeeeecc------cCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC
Q 014006 76 RLGEEVGYAIRFED------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (432)
Q Consensus 76 ~~~~~~g~~~~~~~------~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~ 149 (432)
.+....|.....+. ....+.+|+|+||.. +.....+.+++++||||+| + +.... +..+...+.
T Consensus 530 ~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~~~v~f~~L~llVIDEah-r-fgv~~-----~~~L~~~~~ 598 (926)
T TIGR00580 530 TIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQKDVKFKDLGLLIIDEEQ-R-FGVKQ-----KEKLKELRT 598 (926)
T ss_pred EEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hhCCCCcccCCEEEeeccc-c-cchhH-----HHHHHhcCC
Confidence 22222221111111 112468999999942 2334478899999999999 3 22221 222233344
Q ss_pred CcEEEEEecccChHHHHhhcc---CCCeeecCC-CCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHH
Q 014006 150 KLKILITSATLDGEKVSKFFS---NCPTLNVPG-KLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (432)
Q Consensus 150 ~~~ii~~SAT~~~~~~~~~~~---~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~ 225 (432)
+.++++||||+.+..+...+. +...+.... ...++...+..... .. ....+... ...+++++||||++++
T Consensus 599 ~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~~---i~~~i~~e--l~~g~qv~if~n~i~~ 672 (926)
T TIGR00580 599 SVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDP-EL---VREAIRRE--LLRGGQVFYVHNRIES 672 (926)
T ss_pred CCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCH-HH---HHHHHHHH--HHcCCeEEEEECCcHH
Confidence 589999999987776544322 233333322 23455554432211 11 11111111 1346799999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCccccee
Q 014006 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ 305 (432)
Q Consensus 226 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~ 305 (432)
++.+++.|.+. .++..+..+||+|++++|.+++++|++|+.+|||||+++++|||+|++++||..+.+.
T Consensus 673 ~e~l~~~L~~~--------~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~--- 741 (926)
T TIGR00580 673 IEKLATQLREL--------VPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADK--- 741 (926)
T ss_pred HHHHHHHHHHh--------CCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCC---
Confidence 99999999875 2577899999999999999999999999999999999999999999999999765432
Q ss_pred ecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCcc
Q 014006 306 YNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (432)
Q Consensus 306 ~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~ 347 (432)
.+.++|.||+||+||. +.|.||.++++.
T Consensus 742 --------------~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 742 --------------FGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred --------------CCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 1345889999999999 789999998654
No 59
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-39 Score=298.74 Aligned_cols=310 Identities=21% Similarity=0.263 Sum_probs=218.5
Q ss_pred hhHHHHHHHHhcC-CEEEEEcCCCCCHH-HHHHHHHhhcCC------------CCCc--EEEecccchhhhHHHHHHH--
Q 014006 8 QYEETIVETVEQN-PVVVVIGETGSGKS-TQLSQILHRHGY------------TKSG--IIGVTQPRRVAAVSVARRV-- 69 (432)
Q Consensus 8 ~~q~~i~~~i~~~-~~~ii~apTGsGKT-~~~~~~~~~~~~------------~~~~--~vl~~~P~~~l~~q~~~~~-- 69 (432)
+.|...+++...| .+++-.|.|||||| ++..+++..... .... ..+++.|||+||.|+.+.+
T Consensus 206 ~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~a 285 (731)
T KOG0347|consen 206 EIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKA 285 (731)
T ss_pred cchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHH
Confidence 3566666666666 79999999999999 665555552211 1122 4899999999999998876
Q ss_pred -HHHhCCccCCeeeeee--eecccCCCCceEEEcCHHHHHHHHhcCC----CCCCCcEEEEeCCCcCCCCHHHHHHHHHH
Q 014006 70 -AQELGVRLGEEVGYAI--RFEDRTSERTLIKYLTDGVLLREILSNP----DLSPYSVIILDEAHERSLNTDILLGLVKR 142 (432)
Q Consensus 70 -~~~~~~~~~~~~g~~~--~~~~~~~~~~~i~v~T~~~l~~~l~~~~----~l~~~~~vViDE~h~~~~~~~~~~~~l~~ 142 (432)
+...++.+...+|+-. ..+...+..++|+|+|||+|+.++..+. .+.+++++|+||+| |++..+++.+ +..
T Consensus 286 i~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaD-RmvekghF~E-ls~ 363 (731)
T KOG0347|consen 286 IAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEAD-RMVEKGHFEE-LSK 363 (731)
T ss_pred hccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHH-HHhhhccHHH-HHH
Confidence 3445566666666321 1223334689999999999999986543 68899999999999 9998887666 333
Q ss_pred HHhhh-----cCCcEEEEEecccChHHHHhh---cc--------CCC------eeecCCCCCceeEEeCCCCCcchHHHH
Q 014006 143 LVNLR-----ASKLKILITSATLDGEKVSKF---FS--------NCP------TLNVPGKLYPVEILHSKERPTSYLESA 200 (432)
Q Consensus 143 ~~~~~-----~~~~~ii~~SAT~~~~~~~~~---~~--------~~~------~i~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (432)
++... ....|.+.||||++-...+.. .. +.+ .+.+.+. | +++... +........
T Consensus 364 lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~k--p-kiiD~t-~q~~ta~~l 439 (731)
T KOG0347|consen 364 LLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGK--P-KIIDLT-PQSATASTL 439 (731)
T ss_pred HHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCC--C-eeEecC-cchhHHHHH
Confidence 33322 235799999999863221100 00 000 0111111 1 111111 111111122
Q ss_pred HHHHHHH-----------HhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCC
Q 014006 201 LKTAIDI-----------HVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP 269 (432)
Q Consensus 201 ~~~~~~~-----------~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f 269 (432)
.+..+.. +...-+|++|||||+.+.+.+++-.|.. .++..+++|+.|.+.+|.+.+++|
T Consensus 440 ~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~----------L~i~p~~LHA~M~QKqRLknLEkF 509 (731)
T KOG0347|consen 440 TESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNN----------LDIPPLPLHASMIQKQRLKNLEKF 509 (731)
T ss_pred HHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhh----------cCCCCchhhHHHHHHHHHHhHHHH
Confidence 2222111 1134579999999999999999999987 588899999999999999999999
Q ss_pred CCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccc
Q 014006 270 PPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (432)
Q Consensus 270 ~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~ 348 (432)
++....||||||+++||+|||+|.+||||-.|+ +.+.|+||.||+.|+ ..|..+.|+.+.+
T Consensus 510 ~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPr------------------tseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 510 KQSPSGVLIATDVAARGLDIPGVQHVIHYQVPR------------------TSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred hcCCCeEEEeehhhhccCCCCCcceEEEeecCC------------------ccceeEecccccccccCCCeEEEEeChHH
Confidence 999999999999999999999999999988776 556899999999999 7899999998876
Q ss_pred hhh
Q 014006 349 YHD 351 (432)
Q Consensus 349 ~~~ 351 (432)
...
T Consensus 572 ~~~ 574 (731)
T KOG0347|consen 572 VGP 574 (731)
T ss_pred hHH
Confidence 543
No 60
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=5.1e-37 Score=312.97 Aligned_cols=299 Identities=16% Similarity=0.203 Sum_probs=208.9
Q ss_pred CchhhhHHHHHHHHhcC------CEEEEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHh---
Q 014006 4 LPILQYEETIVETVEQN------PVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL--- 73 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~------~~~ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~--- 73 (432)
+.+.+.|+++++.+.++ .+.+++|||||||| +++.+++... ..+.++++++||++||.|+++.+.+.+
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~--~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~ 337 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAI--EAGYQAALMAPTEILAEQHYENLKKLLEPL 337 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 45788999999998876 37899999999999 3433343332 346789999999999999999987665
Q ss_pred CCccCCeeeeeeeec------ccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhh
Q 014006 74 GVRLGEEVGYAIRFE------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (432)
Q Consensus 74 ~~~~~~~~g~~~~~~------~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~ 147 (432)
+.+++..+|.....+ ....+..+|+++||+.+.. ...+.+++++||||+| +. ...... .+.. .
T Consensus 338 ~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~H-rf-g~~qr~----~l~~-~ 406 (681)
T PRK10917 338 GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQH-RF-GVEQRL----ALRE-K 406 (681)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechh-hh-hHHHHH----HHHh-c
Confidence 345555555322111 1123468999999987642 2357899999999999 32 222221 2222 2
Q ss_pred cCCcEEEEEecccChHHHH-hhccCCCeeecC---CCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCH
Q 014006 148 ASKLKILITSATLDGEKVS-KFFSNCPTLNVP---GKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQ 223 (432)
Q Consensus 148 ~~~~~ii~~SAT~~~~~~~-~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~ 223 (432)
....++++||||+.+..+. ..+++..+..+. ....++...+...... ......+.... ..+++++||||+.
T Consensus 407 ~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~~--~~g~q~~v~~~~i 481 (681)
T PRK10917 407 GENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRR---DEVYERIREEI--AKGRQAYVVCPLI 481 (681)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccH---HHHHHHHHHHH--HcCCcEEEEEccc
Confidence 3347899999998776543 233333322222 2233454444332222 22223332222 4567999999964
Q ss_pred --------HHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEE
Q 014006 224 --------DDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYV 295 (432)
Q Consensus 224 --------~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~V 295 (432)
..++.+++.|.+.+ ++..+..+||+|++++|.+++++|++|+.+|||||+++++|+|+|++++|
T Consensus 482 e~s~~l~~~~~~~~~~~L~~~~--------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~V 553 (681)
T PRK10917 482 EESEKLDLQSAEETYEELQEAF--------PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVM 553 (681)
T ss_pred ccccchhHHHHHHHHHHHHHHC--------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEE
Confidence 45566677776641 35789999999999999999999999999999999999999999999999
Q ss_pred EeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecC
Q 014006 296 IDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYP 345 (432)
Q Consensus 296 I~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~ 345 (432)
|+++.++ .+.+++.||+||+||. .+|.||.+++
T Consensus 554 Ii~~~~r-----------------~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 554 VIENAER-----------------FGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred EEeCCCC-----------------CCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9876543 1346888999999999 6899999985
No 61
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-38 Score=295.24 Aligned_cols=334 Identities=16% Similarity=0.177 Sum_probs=234.9
Q ss_pred hHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhc-CC-----CCCcEEEecccchhhhHHHHHHHHHHh--CCccCC
Q 014006 9 YEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH-GY-----TKSGIIGVTQPRRVAAVSVARRVAQEL--GVRLGE 79 (432)
Q Consensus 9 ~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~-~~-----~~~~~vl~~~P~~~l~~q~~~~~~~~~--~~~~~~ 79 (432)
.|..++..+..+++++.+|||||||| .+..+++..+ .. ..|.+++++.|+++|+.|+++.+.+.. ......
T Consensus 162 iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~ 241 (593)
T KOG0344|consen 162 IQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLR 241 (593)
T ss_pred ccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchh
Confidence 35578999999999999999999999 3333344333 11 335689999999999999999876554 111111
Q ss_pred eeeeeee--ec----ccCCCCceEEEcCHHHHHHHHhcCC---CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhh-hcC
Q 014006 80 EVGYAIR--FE----DRTSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNTDILLGLVKRLVNL-RAS 149 (432)
Q Consensus 80 ~~g~~~~--~~----~~~~~~~~i~v~T~~~l~~~l~~~~---~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~-~~~ 149 (432)
..+.... .. .......++++.||-++...+...+ .++.+.++|+||+| +.++...+...+..+... ..+
T Consensus 242 a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Qla~I~sac~s~ 320 (593)
T KOG0344|consen 242 AAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQLADIYSACQSP 320 (593)
T ss_pred hhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhHHHHHHHHHHHhcCc
Confidence 1111111 11 1112467899999999888886654 79999999999999 778874444445555553 344
Q ss_pred CcEEEEEecccChH--HHHhhc-cCCCeeecCCCCCce-----eEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeC
Q 014006 150 KLKILITSATLDGE--KVSKFF-SNCPTLNVPGKLYPV-----EILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMT 221 (432)
Q Consensus 150 ~~~ii~~SAT~~~~--~~~~~~-~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~ 221 (432)
.+.+-+||||.+.. ++.... .+...+.+..+.... +..|..... ..+-.+.+.....-..++|||+.
T Consensus 321 ~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~-----~K~lA~rq~v~~g~~PP~lIfVQ 395 (593)
T KOG0344|consen 321 DIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEK-----GKLLALRQLVASGFKPPVLIFVQ 395 (593)
T ss_pred chhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecch-----hHHHHHHHHHhccCCCCeEEEEe
Confidence 57888999999764 233222 233333333321111 111111111 11222333333445669999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcc
Q 014006 222 GQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYV 301 (432)
Q Consensus 222 t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~ 301 (432)
+.+.|.++...|.. ..++++...||..++.+|.+++++|+.|+++|++||++++||+|+.+|+.|||+|+|
T Consensus 396 s~eRak~L~~~L~~---------~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 396 SKERAKQLFEELEI---------YDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFP 466 (593)
T ss_pred cHHHHHHHHHHhhh---------ccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCC
Confidence 99999999999963 368899999999999999999999999999999999999999999999999999987
Q ss_pred cceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhhcCCCCCCCccccCCchHHHHHHhh
Q 014006 302 KQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKS 375 (432)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~l~l~~ 375 (432)
. |..+|+||+||+||+ +.|.+|.+|++++....-.....-+..-+++.++.+.++.
T Consensus 467 ~------------------s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~m~~~k 523 (593)
T KOG0344|consen 467 Q------------------SDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKIMGIKK 523 (593)
T ss_pred c------------------hhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHHHHhhhh
Confidence 6 666999999999999 7899999999987765212222222345678888887765
No 62
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.4e-37 Score=324.82 Aligned_cols=298 Identities=18% Similarity=0.180 Sum_probs=206.2
Q ss_pred chhhhHHHHHHHHhcC------CEEEEEcCCCCCHHHH-HHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCC--
Q 014006 5 PILQYEETIVETVEQN------PVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV-- 75 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~------~~~ii~apTGsGKT~~-~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~-- 75 (432)
...+.|.++++.+.++ .+.+++|+||||||.+ +.++.... ..+.++++++||++||.|+++.+.+.++.
T Consensus 600 ~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~--~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~ 677 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV--ENHKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 (1147)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHhhccCC
Confidence 4567899999998886 7899999999999933 22222211 34679999999999999999998776542
Q ss_pred -ccCCeeeeeeeeccc------CCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc
Q 014006 76 -RLGEEVGYAIRFEDR------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (432)
Q Consensus 76 -~~~~~~g~~~~~~~~------~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~ 148 (432)
.+....|.....+.. .....+|+|+||+.+ .....+.+++++||||+| +. .... ... +...+
T Consensus 678 v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~~v~~~~L~lLVIDEah-rf-G~~~----~e~-lk~l~ 746 (1147)
T PRK10689 678 VRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QSDVKWKDLGLLIVDEEH-RF-GVRH----KER-IKAMR 746 (1147)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hCCCCHhhCCEEEEechh-hc-chhH----HHH-HHhcC
Confidence 222222321111111 124679999999643 233367899999999999 33 2221 122 23334
Q ss_pred CCcEEEEEecccChHHHH---hhccCCCeeecCCC-CCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 014006 149 SKLKILITSATLDGEKVS---KFFSNCPTLNVPGK-LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (432)
Q Consensus 149 ~~~~ii~~SAT~~~~~~~---~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~ 224 (432)
.+.|+++||||+.++.+. ..+.+...+..+.. ..++.............. .+.... ..+++++||||+++
T Consensus 747 ~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~----~il~el--~r~gqv~vf~n~i~ 820 (1147)
T PRK10689 747 ADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVRE----AILREI--LRGGQVYYLYNDVE 820 (1147)
T ss_pred CCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHH----HHHHHH--hcCCeEEEEECCHH
Confidence 568999999998776543 23334555544332 234444332211111111 111111 23679999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccce
Q 014006 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR 304 (432)
Q Consensus 225 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~ 304 (432)
.++.+++.|.+. .++..+..+||+|++++|.+++++|++|+.+|||||+++++|+|+|++++||..+-.
T Consensus 821 ~ie~la~~L~~~--------~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad--- 889 (1147)
T PRK10689 821 NIQKAAERLAEL--------VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD--- 889 (1147)
T ss_pred HHHHHHHHHHHh--------CCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCC---
Confidence 999999999875 246788999999999999999999999999999999999999999999999931100
Q ss_pred eecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCc
Q 014006 305 QYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPS 346 (432)
Q Consensus 305 ~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~ 346 (432)
..+.++|+||+||+||. +.|.||.+++.
T Consensus 890 --------------~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 890 --------------HFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred --------------CCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 01335799999999999 78999998854
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.5e-36 Score=289.04 Aligned_cols=291 Identities=21% Similarity=0.224 Sum_probs=186.4
Q ss_pred EEEEEcCCCCCHHHH-HHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeee-----------ecc
Q 014006 22 VVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIR-----------FED 89 (432)
Q Consensus 22 ~~ii~apTGsGKT~~-~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~-----------~~~ 89 (432)
+++++||||||||.+ +.+++.......+.+++++.|+++++.|+++++.+.++...+...|.... ...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 478999999999943 33333333334456999999999999999999988887655433331110 000
Q ss_pred ------c---CCCCceEEEcCHHHHHHHHhcCC-----C--CCCCcEEEEeCCCcCCCCHHH--HHHHHHHHHhhhcCCc
Q 014006 90 ------R---TSERTLIKYLTDGVLLREILSNP-----D--LSPYSVIILDEAHERSLNTDI--LLGLVKRLVNLRASKL 151 (432)
Q Consensus 90 ------~---~~~~~~i~v~T~~~l~~~l~~~~-----~--l~~~~~vViDE~h~~~~~~~~--~~~~l~~~~~~~~~~~ 151 (432)
. ......|+++||+++...+.... . .-..++||+||+| ...+... +..+++.+ ...+.
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h-~~~~~~~~~l~~~l~~l---~~~~~ 156 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVH-FYDEYTLALILAVLEVL---KDNDV 156 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCC-CCCHHHHHHHHHHHHHH---HHcCC
Confidence 0 01235799999999988776521 1 1123799999999 4444322 22222222 23358
Q ss_pred EEEEEecccChHHHHhhccCCCeeecCC--CCCc---eeEEeC--CCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 014006 152 KILITSATLDGEKVSKFFSNCPTLNVPG--KLYP---VEILHS--KERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (432)
Q Consensus 152 ~ii~~SAT~~~~~~~~~~~~~~~i~~~~--~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~ 224 (432)
|+++||||++. .+.+++.......... ...+ ...+.. ...........+..+... ...++++||||+|++
T Consensus 157 ~~i~~SATlp~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lVf~~t~~ 233 (358)
T TIGR01587 157 PILLMSATLPK-FLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEF--IKKGGKIAIIVNTVD 233 (358)
T ss_pred CEEEEecCchH-HHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHH--hhCCCeEEEEECCHH
Confidence 99999999984 4566554322111110 0000 000000 000000001122222221 234679999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhcc----CCCCCCCccEEEEeecCcccccccCCeEEEEeCCc
Q 014006 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRV----FSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (432)
Q Consensus 225 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~----~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~ 300 (432)
+|+.++..|.+.. ....+..+||++++.+|.++ ++.|++|..+|||||+++++|+|++ +++||++..
T Consensus 234 ~~~~~~~~L~~~~--------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~ 304 (358)
T TIGR01587 234 RAQEFYQQLKENA--------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELA 304 (358)
T ss_pred HHHHHHHHHHhhc--------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCC
Confidence 9999999998751 33468999999999999764 8899999999999999999999997 778886432
Q ss_pred ccceeecCCCCCccceEeeecHhhHHHhhcccCCCC--C---CeEEEecCccc
Q 014006 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR--P---GKCYRLYPSTV 348 (432)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~--~---G~~~~l~~~~~ 348 (432)
+..+|+||+||+||.+ . |.+|.+....+
T Consensus 305 --------------------~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 305 --------------------PIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred --------------------CHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 4568999999999973 2 36777664443
No 64
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.3e-36 Score=279.24 Aligned_cols=324 Identities=19% Similarity=0.201 Sum_probs=222.5
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHh-hcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeee
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILH-RHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~-~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g 82 (432)
+.-..||..+......+ |++|+.|||=|||+.+...+. .+.+.++ +++++.||+-|+.|.+..+.+.++.+......
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ 91 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAA 91 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCChhheee
Confidence 45567898888887776 778889999999965554444 4444555 99999999999999999999999987654432
Q ss_pred e--eeeec--ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 83 Y--AIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 83 ~--~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
. .++.+ .....+.+|+|+||..+.+-+..+. .+.++.++|+|||| |.....-.-.+.+..++... ++.++++|
T Consensus 92 ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k-~~~ilgLT 169 (542)
T COG1111 92 LTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAK-NPLILGLT 169 (542)
T ss_pred ecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhcc-CceEEEEe
Confidence 1 22222 1223678999999999998887665 89999999999999 77766556665666666554 48999999
Q ss_pred cccCh--HHHHhhccCCCe--e--ecCCC----C--CceeEEeCCC---------------------------------C
Q 014006 158 ATLDG--EKVSKFFSNCPT--L--NVPGK----L--YPVEILHSKE---------------------------------R 192 (432)
Q Consensus 158 AT~~~--~~~~~~~~~~~~--i--~~~~~----~--~~~~~~~~~~---------------------------------~ 192 (432)
||+.+ +.+++...|..+ + ..+.. + ...+..+... .
T Consensus 170 ASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~ 249 (542)
T COG1111 170 ASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSS 249 (542)
T ss_pred cCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccC
Confidence 99843 445544432111 1 11100 0 0000000000 0
Q ss_pred ------------------Cc-c---------------------------------h------------------------
Q 014006 193 ------------------PT-S---------------------------------Y------------------------ 196 (432)
Q Consensus 193 ------------------~~-~---------------------------------~------------------------ 196 (432)
.. + |
T Consensus 250 ~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~ 329 (542)
T COG1111 250 PVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPY 329 (542)
T ss_pred cccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChh
Confidence 00 0 0
Q ss_pred --------------------HHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCC
Q 014006 197 --------------------LESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGS 256 (432)
Q Consensus 197 --------------------~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~ 256 (432)
++.....+........+.++|||++-|+.|+.+.+.|.+...+.... ..|-...-...|
T Consensus 330 ~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~r-FiGQa~r~~~~G 408 (542)
T COG1111 330 FKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVR-FIGQASREGDKG 408 (542)
T ss_pred hHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeE-Eeeccccccccc
Confidence 00111112222223445699999999999999999998863221000 000000112368
Q ss_pred CCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC
Q 014006 257 LPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR 336 (432)
Q Consensus 257 l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~ 336 (432)
|++.++.++++.|++|..+|||||+++|.|+|||+++.||-|+-.. |..-++||.||+||.+
T Consensus 409 MsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvp------------------SeIR~IQR~GRTGR~r 470 (542)
T COG1111 409 MSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVP------------------SEIRSIQRKGRTGRKR 470 (542)
T ss_pred cCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCc------------------HHHHHHHhhCccccCC
Confidence 9999999999999999999999999999999999999999755322 6778999999999999
Q ss_pred CCeEEEecCccchh
Q 014006 337 PGKCYRLYPSTVYH 350 (432)
Q Consensus 337 ~G~~~~l~~~~~~~ 350 (432)
+|.+|.|+++...+
T Consensus 471 ~Grv~vLvt~gtrd 484 (542)
T COG1111 471 KGRVVVLVTEGTRD 484 (542)
T ss_pred CCeEEEEEecCchH
Confidence 99999999888443
No 65
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.8e-36 Score=303.12 Aligned_cols=301 Identities=16% Similarity=0.143 Sum_probs=191.4
Q ss_pred hhhhHHHHHHHHhcCC-EEEEEcCCCCCHHHHHHHHHhhc-CCC-CCcEEEecccchhhhHHHHHHHHHHhC--------
Q 014006 6 ILQYEETIVETVEQNP-VVVVIGETGSGKSTQLSQILHRH-GYT-KSGIIGVTQPRRVAAVSVARRVAQELG-------- 74 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~-~~ii~apTGsGKT~~~~~~~~~~-~~~-~~~~vl~~~P~~~l~~q~~~~~~~~~~-------- 74 (432)
-+++|+++++.+..|+ ++++.+|||||||..+..++... ... ...++++++|+|+|+.|+++.+.+...
T Consensus 16 PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~ 95 (844)
T TIGR02621 16 PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEV 95 (844)
T ss_pred CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchh
Confidence 5789999999999998 67778999999994332222222 111 223666788999999999988644332
Q ss_pred ------------------CccCCeeeeeeeec--ccCCCCceEEEcCHHHHHHHHhcC-------------CCCCCCcEE
Q 014006 75 ------------------VRLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSN-------------PDLSPYSVI 121 (432)
Q Consensus 75 ------------------~~~~~~~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~-------------~~l~~~~~v 121 (432)
.++...+|+..... ......++|+|+|+..+.+..+.. ..+.+++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~L 175 (844)
T TIGR02621 96 EAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALI 175 (844)
T ss_pred hhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccceEE
Confidence 22222334211111 112356799999976554333210 026889999
Q ss_pred EEeCCCcCCCCHHHHHHHHHHHHhhh--cC---CcEEEEEecccChHH--HH-hhccCCCeeecCCCCCcee--EEeCCC
Q 014006 122 ILDEAHERSLNTDILLGLVKRLVNLR--AS---KLKILITSATLDGEK--VS-KFFSNCPTLNVPGKLYPVE--ILHSKE 191 (432)
Q Consensus 122 ViDE~h~~~~~~~~~~~~l~~~~~~~--~~---~~~ii~~SAT~~~~~--~~-~~~~~~~~i~~~~~~~~~~--~~~~~~ 191 (432)
|+|||| +++++... ++.+.... +. +.|+++||||++.+. +. .+..+...+.+..+....+ ..+...
T Consensus 176 VLDEAD---Ld~gF~~~-l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v 251 (844)
T TIGR02621 176 VHDEAH---LEPAFQEL-LKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPP 251 (844)
T ss_pred EEehhh---hccccHHH-HHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEEec
Confidence 999999 34454443 45555432 22 269999999997643 33 3333333333322211110 112111
Q ss_pred CCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHh-----ccC
Q 014006 192 RPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQV-----RVF 266 (432)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~-----~~~ 266 (432)
.........+..+.... ...++++||||||+++|+.+++.|.+. ++ ..+||+|++.+|. +++
T Consensus 252 ~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~----------g~--~lLHG~m~q~dR~~~~~~~il 318 (844)
T TIGR02621 252 SDEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKE----------KF--ELLTGTLRGAERDDLVKKEIF 318 (844)
T ss_pred ChHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhc----------CC--eEeeCCCCHHHHhhHHHHHHH
Confidence 11112222333332222 345679999999999999999999763 33 7899999999999 778
Q ss_pred CCCCC----Cc-------cEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC
Q 014006 267 SPPPP----NC-------RRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT 335 (432)
Q Consensus 267 ~~f~~----g~-------~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~ 335 (432)
+.|++ |. .+|||||+++|+|+||+. ++||+... +.++|+||+||+||.
T Consensus 319 ~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~a--------------------P~esyIQRiGRtgR~ 377 (844)
T TIGR02621 319 NRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLA--------------------PFESMQQRFGRVNRF 377 (844)
T ss_pred HHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCC--------------------CHHHHHHHhcccCCC
Confidence 88876 43 689999999999999996 77776321 347999999999998
Q ss_pred CC--CeEEEec
Q 014006 336 RP--GKCYRLY 344 (432)
Q Consensus 336 ~~--G~~~~l~ 344 (432)
+. |..+.++
T Consensus 378 G~~~~~~i~vv 388 (844)
T TIGR02621 378 GELQACQIAVV 388 (844)
T ss_pred CCCCCceEEEE
Confidence 32 3334444
No 66
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.6e-36 Score=305.96 Aligned_cols=299 Identities=16% Similarity=0.184 Sum_probs=205.3
Q ss_pred CchhhhHHHHHHHHhcC------CEEEEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhC--
Q 014006 4 LPILQYEETIVETVEQN------PVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG-- 74 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~------~~~ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~-- 74 (432)
+.+.+.|+++++.+.++ .+.+++|||||||| .++.+++... ..+.++++++||++|+.|+++.+.+.++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~--~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~ 311 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAI--EAGYQVALMAPTEILAEQHYNSLRNLLAPL 311 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEECCHHHHHHHHHHHHHHHhccc
Confidence 34678899999988765 26799999999999 3333333322 2466899999999999999999877664
Q ss_pred -CccCCeeeeeeeec------ccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhh
Q 014006 75 -VRLGEEVGYAIRFE------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (432)
Q Consensus 75 -~~~~~~~g~~~~~~------~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~ 147 (432)
..+...+|.....+ .......+|+++|++.+.. ...+.+++++||||+| + +....... +....
T Consensus 312 gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH-~-fg~~qr~~----l~~~~ 381 (630)
T TIGR00643 312 GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQH-R-FGVEQRKK----LREKG 381 (630)
T ss_pred CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechh-h-ccHHHHHH----HHHhc
Confidence 45554455322111 1123467999999987642 3357889999999999 3 32222222 22222
Q ss_pred c--CCcEEEEEecccChHHHHh-hccCCCeee---cCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeC
Q 014006 148 A--SKLKILITSATLDGEKVSK-FFSNCPTLN---VPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMT 221 (432)
Q Consensus 148 ~--~~~~ii~~SAT~~~~~~~~-~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~ 221 (432)
. ...++++||||+.+..+.. .++...... .+....++...+..... .......+.... ..+++++|||+
T Consensus 382 ~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~---~~~~~~~i~~~l--~~g~q~~v~~~ 456 (630)
T TIGR00643 382 QGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDE---KDIVYEFIEEEI--AKGRQAYVVYP 456 (630)
T ss_pred ccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcch---HHHHHHHHHHHH--HhCCcEEEEEc
Confidence 1 1478999999986665442 222222211 22223445444433221 122222222221 34679999999
Q ss_pred CH--------HHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeE
Q 014006 222 GQ--------DDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVV 293 (432)
Q Consensus 222 t~--------~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~ 293 (432)
.. ..++.+++.|.+. .++..+..+||+|++++|.+++++|++|+.+|||||+++++|||+|+++
T Consensus 457 ~i~~s~~~~~~~a~~~~~~L~~~--------~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~ 528 (630)
T TIGR00643 457 LIEESEKLDLKAAEALYERLKKA--------FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNAT 528 (630)
T ss_pred cccccccchHHHHHHHHHHHHhh--------CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCc
Confidence 76 4566667777654 2467899999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEec
Q 014006 294 YVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLY 344 (432)
Q Consensus 294 ~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~ 344 (432)
+||+++.++ .+.+++.||+||+||. .+|.|+.++
T Consensus 529 ~VIi~~~~r-----------------~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 529 VMVIEDAER-----------------FGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred EEEEeCCCc-----------------CCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 999876543 1456889999999998 689999998
No 67
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=4.2e-35 Score=286.15 Aligned_cols=323 Identities=20% Similarity=0.280 Sum_probs=213.2
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHH-hhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCe-
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQIL-HRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE- 80 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~-~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~- 80 (432)
++++..||+++.+..+ ++|++|++|||+|||..+..++ ....+.++.++++++|++-|+.|+...+.. ++.....+
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~-~~~~~~~T~ 137 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSI-YLIPYSVTG 137 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhh-ccCccccee
Confidence 6899999999999999 9999999999999994444343 344666778999999999999998855533 33331111
Q ss_pred -eeeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC--CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEE
Q 014006 81 -VGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (432)
Q Consensus 81 -~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~--~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~ 155 (432)
.|...... .......++.|+||..+.+.+.+.. .++.+.++|||||| +.......-.+.+..+.....+.|+++
T Consensus 138 ~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~~qILg 216 (746)
T KOG0354|consen 138 QLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQGNQILG 216 (746)
T ss_pred eccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhccccEEE
Confidence 11111111 1112467999999999998886543 47889999999999 666555555556666655444459999
Q ss_pred EecccCh--HHHHhhccCCCe-eec-------------C-CCCCceeE--------------------------------
Q 014006 156 TSATLDG--EKVSKFFSNCPT-LNV-------------P-GKLYPVEI-------------------------------- 186 (432)
Q Consensus 156 ~SAT~~~--~~~~~~~~~~~~-i~~-------------~-~~~~~~~~-------------------------------- 186 (432)
+|||+.. +.+..+..+... +.+ . ....|++.
T Consensus 217 LTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~ 296 (746)
T KOG0354|consen 217 LTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISD 296 (746)
T ss_pred EecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcccccc
Confidence 9999853 223332211000 000 0 00000000
Q ss_pred ---EeCC---------------CCC-------------------------------------------------------
Q 014006 187 ---LHSK---------------ERP------------------------------------------------------- 193 (432)
Q Consensus 187 ---~~~~---------------~~~------------------------------------------------------- 193 (432)
.|.. ...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~ 376 (746)
T KOG0354|consen 297 KSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNF 376 (746)
T ss_pred ccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHH
Confidence 0000 000
Q ss_pred -----------------cchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHh-hccCCCCCCeEEEEecC
Q 014006 194 -----------------TSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIR-SLDEGSCMDAVILPLHG 255 (432)
Q Consensus 194 -----------------~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~-~~~~~~~~~~~~~~~h~ 255 (432)
...++...+.+.+.....+..++|||+.+|+.|..+..+|.+... .+......|-.-..-..
T Consensus 377 ~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~ 456 (746)
T KOG0354|consen 377 TENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQST 456 (746)
T ss_pred HHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecccccccc
Confidence 000111222233333445567999999999999999999985211 11111001111111124
Q ss_pred CCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC
Q 014006 256 SLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT 335 (432)
Q Consensus 256 ~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~ 335 (432)
+|++.++.+++++|++|.++|||||+++|.|+||+.++.||-||+.. +....+||+|| ||+
T Consensus 457 gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~s------------------npIrmIQrrGR-gRa 517 (746)
T KOG0354|consen 457 GMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSS------------------NPIRMVQRRGR-GRA 517 (746)
T ss_pred ccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCc------------------cHHHHHHHhcc-ccc
Confidence 89999999999999999999999999999999999999999987644 55688999999 999
Q ss_pred CCCeEEEecCcc
Q 014006 336 RPGKCYRLYPST 347 (432)
Q Consensus 336 ~~G~~~~l~~~~ 347 (432)
+.|+|+.|++..
T Consensus 518 ~ns~~vll~t~~ 529 (746)
T KOG0354|consen 518 RNSKCVLLTTGS 529 (746)
T ss_pred cCCeEEEEEcch
Confidence 999999999844
No 68
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-36 Score=267.13 Aligned_cols=308 Identities=19% Similarity=0.255 Sum_probs=233.8
Q ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCC-CCCcEEEecccchhhhHHHHHHHH---HHhCCccCCeee
Q 014006 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVA---QELGVRLGEEVG 82 (432)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~-~~~~~vl~~~P~~~l~~q~~~~~~---~~~~~~~~~~~g 82 (432)
..|+.++..+-.|.++.+++++|+||| ++...++..... .....++++.|+++|+.|..+... ...+..+...+|
T Consensus 51 aIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~ig 130 (397)
T KOG0327|consen 51 AIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIG 130 (397)
T ss_pred HHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecC
Confidence 345566666778999999999999999 655555555332 344578999999999999986542 233344555555
Q ss_pred eeeee-cc--cCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q 014006 83 YAIRF-ED--RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (432)
Q Consensus 83 ~~~~~-~~--~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SA 158 (432)
..... +. .......|++.|||+...++.... ....+.++|+||+++ ++..++... +..+.+..|.+.|++++||
T Consensus 131 g~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE-mLs~gfkdq-I~~if~~lp~~vQv~l~SA 208 (397)
T KOG0327|consen 131 GTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE-MLSRGFKDQ-IYDIFQELPSDVQVVLLSA 208 (397)
T ss_pred cccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh-hhccchHHH-HHHHHHHcCcchhheeecc
Confidence 43332 22 223458999999999999986554 566799999999995 566666555 7788888888899999999
Q ss_pred ccChHH--H-HhhccCCCeeecCCCCC---ceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHH
Q 014006 159 TLDGEK--V-SKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (432)
Q Consensus 159 T~~~~~--~-~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~ 232 (432)
|++.+. + .+|..++..+.+..... ..+.+|....+.. ++..+.+++. .-.+.+|||||++.+..+...
T Consensus 209 T~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~----k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~ 282 (397)
T KOG0327|consen 209 TMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE----KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDK 282 (397)
T ss_pred cCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc----cccHHHHHHH--hhhcceEEecchhhHHHHHHH
Confidence 999865 3 35555555554443221 2223333333333 4455555554 456999999999999999999
Q ss_pred HHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCC
Q 014006 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGM 312 (432)
Q Consensus 233 L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~ 312 (432)
|.. .+..+...|+.|.+.+|..++..|+.|..+|||+|+.+++|+|+-++..||++++|.
T Consensus 283 L~~----------~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~---------- 342 (397)
T KOG0327|consen 283 LRA----------HGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPA---------- 342 (397)
T ss_pred Hhh----------CCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecccc----------
Confidence 955 588999999999999999999999999999999999999999999999999988865
Q ss_pred ccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 313 YSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 313 ~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
.+++|+||+||+||. .+|.++.++++.+...
T Consensus 343 --------~~~~yihR~gr~gr~grkg~~in~v~~~d~~~ 374 (397)
T KOG0327|consen 343 --------RKENYIHRIGRAGRFGRKGVAINFVTEEDVRD 374 (397)
T ss_pred --------chhhhhhhcccccccCCCceeeeeehHhhHHH
Confidence 556999999999999 7999999998876654
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=3.9e-34 Score=271.08 Aligned_cols=284 Identities=16% Similarity=0.202 Sum_probs=180.4
Q ss_pred hHHHHHHHHhcCC--EEEEEcCCCCCHHHH-HHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhC-------CccC
Q 014006 9 YEETIVETVEQNP--VVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG-------VRLG 78 (432)
Q Consensus 9 ~q~~i~~~i~~~~--~~ii~apTGsGKT~~-~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~-------~~~~ 78 (432)
||.++++++.+++ ++++.||||||||.+ +.+++. .+.+++++.|+++|+.|+++++.+.+. ..+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~-----~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~ 75 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH-----GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLL 75 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH-----cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence 6899999998886 488899999999933 222222 234678999999999999999877652 1111
Q ss_pred Ceeeeeee----ec------------------ccCCCCceEEEcCHHHHHHHHhc---CC------CCCCCcEEEEeCCC
Q 014006 79 EEVGYAIR----FE------------------DRTSERTLIKYLTDGVLLREILS---NP------DLSPYSVIILDEAH 127 (432)
Q Consensus 79 ~~~g~~~~----~~------------------~~~~~~~~i~v~T~~~l~~~l~~---~~------~l~~~~~vViDE~h 127 (432)
...|.... .. ......+.|+++||+.+..++.. .. .+.++++||+||+|
T Consensus 76 ~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H 155 (357)
T TIGR03158 76 HVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFH 155 (357)
T ss_pred EecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccc
Confidence 12221000 00 00123567888889888765432 11 26889999999999
Q ss_pred cCCCCHH-HHH---HHHHHHHhhhcCCcEEEEEecccChHHHH---hhc-cCCCeeecCCCC------------------
Q 014006 128 ERSLNTD-ILL---GLVKRLVNLRASKLKILITSATLDGEKVS---KFF-SNCPTLNVPGKL------------------ 181 (432)
Q Consensus 128 ~~~~~~~-~~~---~~l~~~~~~~~~~~~ii~~SAT~~~~~~~---~~~-~~~~~i~~~~~~------------------ 181 (432)
+...+.. .+. .... +........++++||||+++.... ... .+.++..+.+..
T Consensus 156 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 156 LYDAKQLVGMLFLLAYMQ-LIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred ccCcccchhhhhhhHHHH-HHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 6432221 111 2122 222222347999999999875322 220 123444444440
Q ss_pred ----CceeEEeCCCC--CcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecC
Q 014006 182 ----YPVEILHSKER--PTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHG 255 (432)
Q Consensus 182 ----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~ 255 (432)
.+++..+.... ....+....+.+........++++||||||++.++.++..|++. ..+..+..+||
T Consensus 235 ~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~--------~~~~~~~~l~g 306 (357)
T TIGR03158 235 RPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQ--------GLGDDIGRITG 306 (357)
T ss_pred ceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhh--------CCCceEEeeec
Confidence 02332222211 11112222233333333345679999999999999999999874 12457888999
Q ss_pred CCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccC
Q 014006 256 SLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG 333 (432)
Q Consensus 256 ~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaG 333 (432)
.+++++|.++. +.+|||||+++++|+|++++ +||. + |.+.++|+||+||+|
T Consensus 307 ~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi~-~-------------------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 307 FAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLIF-S-------------------ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEEE-C-------------------CCCHHHHhhhcccCC
Confidence 99999997653 67899999999999999987 4552 2 236789999999998
No 70
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.2e-36 Score=297.56 Aligned_cols=312 Identities=21% Similarity=0.269 Sum_probs=226.7
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HH-HHHHHhhc-----CCCCCcEEEecccchhhhHHHHHHHHHHh---C
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQ-LSQILHRH-----GYTKSGIIGVTQPRRVAAVSVARRVAQEL---G 74 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~-~~~~~~~~-----~~~~~~~vl~~~P~~~l~~q~~~~~~~~~---~ 74 (432)
+..+.|.++|++|..|+++|.+|.|||||| .+ +|.+.... ....|+..+++.|||+|+.|+.+.+.++. +
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ 466 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLG 466 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcC
Confidence 345678899999999999999999999999 44 55442221 12347789999999999999998865443 4
Q ss_pred CccCCeeeeeeeeccc--CCCCceEEEcCHHHHHHHHhcCC----CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc
Q 014006 75 VRLGEEVGYAIRFEDR--TSERTLIKYLTDGVLLREILSNP----DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (432)
Q Consensus 75 ~~~~~~~g~~~~~~~~--~~~~~~i~v~T~~~l~~~l~~~~----~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~ 148 (432)
..+...+|.....+.. ....+.|+|||||+..+.+..+. .+.++.++|+|||| |+++++|.-.....+...++
T Consensus 467 ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaD-rmfdmgfePq~~~Ii~nlrp 545 (997)
T KOG0334|consen 467 IRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEAD-RMFDMGFEPQITRILQNLRP 545 (997)
T ss_pred ceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhh-hhheeccCcccchHHhhcch
Confidence 4444444432222211 12458999999999999985443 56666699999999 99998886655553333444
Q ss_pred CCcEEEEEecccChHH--HHhhccCCCe-eecCCCCC---ceeEEeCCCC-CcchHHHHHHHHHHHHhcCCCCCEEEEeC
Q 014006 149 SKLKILITSATLDGEK--VSKFFSNCPT-LNVPGKLY---PVEILHSKER-PTSYLESALKTAIDIHVREPEGDVLIFMT 221 (432)
Q Consensus 149 ~~~~ii~~SAT~~~~~--~~~~~~~~~~-i~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lvF~~ 221 (432)
..|.+++|||++... ++.-....|+ +.+.++.. .+...+.... ..+.+...... +......+++||||.
T Consensus 546 -drQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eL---l~e~~e~~~tiiFv~ 621 (997)
T KOG0334|consen 546 -DRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLEL---LGERYEDGKTIIFVD 621 (997)
T ss_pred -hhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHH---HHHHhhcCCEEEEEc
Confidence 599999999998752 3322222332 33433321 1111111111 12222222222 222344789999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcc
Q 014006 222 GQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYV 301 (432)
Q Consensus 222 t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~ 301 (432)
....|..+.+.|.+ .++.+..+||+.++.+|..+++.|++|..++||||+++++|+|++++.+||||++|
T Consensus 622 ~qe~~d~l~~~L~~----------ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~p 691 (997)
T KOG0334|consen 622 KQEKADALLRDLQK----------AGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFP 691 (997)
T ss_pred CchHHHHHHHHHHh----------cCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccc
Confidence 99999999999986 48888889999999999999999999999999999999999999999999999987
Q ss_pred cceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccch
Q 014006 302 KQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (432)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~ 349 (432)
. -++.|+||.||+||. +.|.||.+.++++.
T Consensus 692 n------------------h~edyvhR~gRTgragrkg~AvtFi~p~q~ 722 (997)
T KOG0334|consen 692 N------------------HYEDYVHRVGRTGRAGRKGAAVTFITPDQL 722 (997)
T ss_pred h------------------hHHHHHHHhcccccCCccceeEEEeChHHh
Confidence 6 556799999999999 67999999988443
No 71
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=285.73 Aligned_cols=332 Identities=17% Similarity=0.196 Sum_probs=227.1
Q ss_pred hhhHHHHHHHH-hcCCEEEEEcCCCCCHHHHHH-HHHhhcC--------CCCCcEEEecccchhhhHHHHHHHHHHhC--
Q 014006 7 LQYEETIVETV-EQNPVVVVIGETGSGKSTQLS-QILHRHG--------YTKSGIIGVTQPRRVAAVSVARRVAQELG-- 74 (432)
Q Consensus 7 ~~~q~~i~~~i-~~~~~~ii~apTGsGKT~~~~-~~~~~~~--------~~~~~~vl~~~P~~~l~~q~~~~~~~~~~-- 74 (432)
.+.|-++++.. ..+.|.+|+||||||||.++. .++.... ...+-++++++|.++||.++++.+.+.++
T Consensus 112 N~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~ 191 (1230)
T KOG0952|consen 112 NRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL 191 (1230)
T ss_pred HHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc
Confidence 45677777764 568899999999999993332 3332221 12456999999999999999999977663
Q ss_pred -CccCCeeeeeeeecccCCCCceEEEcCHHHHHHHHhc----CCCCCCCcEEEEeCCCcCCC-CHHHHHHHHHHHHhh--
Q 014006 75 -VRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILS----NPDLSPYSVIILDEAHERSL-NTDILLGLVKRLVNL-- 146 (432)
Q Consensus 75 -~~~~~~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~----~~~l~~~~~vViDE~h~~~~-~~~~~~~~l~~~~~~-- 146 (432)
..+...+|.. ......-.+++|++.|||..--.-+. ...++.+++|||||+|...- ....++.++.+.++.
T Consensus 192 gi~v~ELTGD~-ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ve 270 (1230)
T KOG0952|consen 192 GISVRELTGDT-QLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVE 270 (1230)
T ss_pred cceEEEecCcc-hhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHH
Confidence 5555555622 22222246799999999976422221 12688899999999995222 222355555555532
Q ss_pred -hcCCcEEEEEecccCh-HHHHhhccC---CCeeecCC--CCCceeEEeCCCCCc-------chHHHHHHHHHHHHhcCC
Q 014006 147 -RASKLKILITSATLDG-EKVSKFFSN---CPTLNVPG--KLYPVEILHSKERPT-------SYLESALKTAIDIHVREP 212 (432)
Q Consensus 147 -~~~~~~ii~~SAT~~~-~~~~~~~~~---~~~i~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 212 (432)
....+++|++|||+|. ++++.|++- ..++.+++ ++.|....+...... ..-+.....+.+.. ..
T Consensus 271 ssqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~--~~ 348 (1230)
T KOG0952|consen 271 SSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL--QE 348 (1230)
T ss_pred hhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH--Hc
Confidence 2235899999999966 789999975 34455555 445554443222111 11112222333332 45
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhhccCCC-------------CCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEe
Q 014006 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGS-------------CMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVS 279 (432)
Q Consensus 213 ~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~-------------~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilva 279 (432)
+.+++|||++++++.+.|+.|.+.....+..+ +...+...||+||..++|..++..|..|.++|++|
T Consensus 349 g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~c 428 (1230)
T KOG0952|consen 349 GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCC 428 (1230)
T ss_pred CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEe
Confidence 77999999999999999999987654322210 11245778999999999999999999999999999
Q ss_pred ecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC---CCCeEEEecCccch
Q 014006 280 TNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPSTVY 349 (432)
Q Consensus 280 T~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~---~~G~~~~l~~~~~~ 349 (432)
|.+++.|+++|+-.++| - .+..||+..|... -.+..+.+|..|||||. ..|..+.+-+.+..
T Consensus 429 TaTLAwGVNLPA~aViI-K---GT~~ydsskg~f~----dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl 493 (1230)
T KOG0952|consen 429 TATLAWGVNLPAYAVII-K---GTQVYDSSKGSFV----DLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKL 493 (1230)
T ss_pred cceeeeccCCcceEEEe-c---CCcccccccCcee----eehHHHHHHHHhccCCCCCCCCceEEEEecccHH
Confidence 99999999999665555 3 3567887775332 22556788999999999 46888877665544
No 72
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=4.7e-34 Score=293.19 Aligned_cols=325 Identities=22% Similarity=0.204 Sum_probs=227.2
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCcc-----C
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRL-----G 78 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~-----~ 78 (432)
.+|+||.++++.+.+|++++|++||||||| +++.+++......+..+++++.|+++|++++.+++.+...... +
T Consensus 70 ~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~ 149 (851)
T COG1205 70 RLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFG 149 (851)
T ss_pred cccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceee
Confidence 489999999999999999999999999999 7777777777666677999999999999999999876553222 2
Q ss_pred Ceeeeeeeecc--cCCCCceEEEcCHHHHHHHHhcCC-----CCCCCcEEEEeCCCc-CCCCHHHHHHHHHHHHhhh---
Q 014006 79 EEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP-----DLSPYSVIILDEAHE-RSLNTDILLGLVKRLVNLR--- 147 (432)
Q Consensus 79 ~~~g~~~~~~~--~~~~~~~i~v~T~~~l~~~l~~~~-----~l~~~~~vViDE~h~-~~~~~~~~~~~l~~~~~~~--- 147 (432)
...|.....+. .....++|++++|.+|..+++... .+.++++||+||+|- +..-...+.-+++++....
T Consensus 150 ~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~ 229 (851)
T COG1205 150 RYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRY 229 (851)
T ss_pred eecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhcc
Confidence 22232211111 124679999999999988665432 578899999999995 2233333444556655543
Q ss_pred cCCcEEEEEeccc-ChH-HHHhhccCCCeeecCCCCCce--eEEeCCCCCc--------chHHHHHHHHHHHHhcCCCCC
Q 014006 148 ASKLKILITSATL-DGE-KVSKFFSNCPTLNVPGKLYPV--EILHSKERPT--------SYLESALKTAIDIHVREPEGD 215 (432)
Q Consensus 148 ~~~~~ii~~SAT~-~~~-~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 215 (432)
+...|+|++|||+ ++. ..+++++..-...+.+...|- .......+.. .........+.... -..+-+
T Consensus 230 ~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~-~~~~~~ 308 (851)
T COG1205 230 GSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALL-VRNGIQ 308 (851)
T ss_pred CCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHH-HHcCce
Confidence 3468999999999 443 355555432222143332222 2222111100 00111111111111 234569
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEE
Q 014006 216 VLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYV 295 (432)
Q Consensus 216 ~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~V 295 (432)
+|+|+.+++.++.++..........+ . .....+..++|++..++|.+++..|+.|+..++++|++++.||||.+++.|
T Consensus 309 tL~F~~sr~~~e~~~~~~~~~~~~~~-~-~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldav 386 (851)
T COG1205 309 TLVFFRSRKQVELLYLSPRRRLVREG-G-KLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAV 386 (851)
T ss_pred EEEEEehhhhhhhhhhchhHHHhhcc-h-hhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhH
Confidence 99999999999999866655544332 1 134568899999999999999999999999999999999999999999999
Q ss_pred EeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC-CCeEEEecCccch
Q 014006 296 IDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR-PGKCYRLYPSTVY 349 (432)
Q Consensus 296 I~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~-~G~~~~l~~~~~~ 349 (432)
|.+|+|. .|..+++||+|||||.. .+..+.....+..
T Consensus 387 i~~g~P~-----------------~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~ 424 (851)
T COG1205 387 IAYGYPG-----------------VSVLSFRQRAGRAGRRGQESLVLVVLRSDPL 424 (851)
T ss_pred hhcCCCC-----------------chHHHHHHhhhhccCCCCCceEEEEeCCCcc
Confidence 9988764 26679999999999994 6666666554433
No 73
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.1e-33 Score=279.80 Aligned_cols=296 Identities=13% Similarity=0.049 Sum_probs=197.8
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeee
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~ 83 (432)
...+++|.+++..+..+++.++++|||+|||..+..+..........++++++|+++|+.|..+++.+..........+.
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 56778999999888888889999999999995544343222222334899999999999999999877654322211111
Q ss_pred eeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChH
Q 014006 84 AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGE 163 (432)
Q Consensus 84 ~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~ 163 (432)
. .........+|+|+|++++.+... ..+.++++||+|||| +..... + ..++...++..++++||||+...
T Consensus 193 ~--~g~~~~~~~~I~VaT~qsl~~~~~--~~~~~~~~iIvDEaH-~~~~~~-~----~~il~~~~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 193 Y--SGTAKDTDAPIVVSTWQSAVKQPK--EWFDQFGMVIVDECH-LFTGKS-L----TSIITKLDNCKFKFGLTGSLRDG 262 (501)
T ss_pred e--cCcccCCCCCEEEeeHHHHhhchh--hhccccCEEEEEchh-cccchh-H----HHHHHhhhccceEEEEeccCCCc
Confidence 0 011122457899999999875432 257899999999999 454432 2 33333343446899999999542
Q ss_pred H-----HHhhccCCCeeecC-------CCCCceeEE--eCCCC--------CcchH------------HHHHHHHHHHHh
Q 014006 164 K-----VSKFFSNCPTLNVP-------GKLYPVEIL--HSKER--------PTSYL------------ESALKTAIDIHV 209 (432)
Q Consensus 164 ~-----~~~~~~~~~~i~~~-------~~~~~~~~~--~~~~~--------~~~~~------------~~~~~~~~~~~~ 209 (432)
. +..+++. ....+. +...+.... ..... ...+. ...+..+....
T Consensus 263 ~~~~~~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~- 340 (501)
T PHA02558 263 KANILQYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKL- 340 (501)
T ss_pred cccHHHHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHH-
Confidence 2 2234432 111110 111111110 10000 00010 01111111111
Q ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEee-cCcccccc
Q 014006 210 REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST-NIAETSLT 288 (432)
Q Consensus 210 ~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT-~~~~~Gid 288 (432)
...+++++||+++.++++.+++.|.+. +..+..+||+++.++|..+++.|++|+..||||| +++++|+|
T Consensus 341 ~~~~~~~lV~~~~~~h~~~L~~~L~~~----------g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~D 410 (501)
T PHA02558 341 AKKGENTFVMFKYVEHGKPLYEMLKKV----------YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGIS 410 (501)
T ss_pred HhcCCCEEEEEEEHHHHHHHHHHHHHc----------CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccc
Confidence 234578999999999999999999873 6789999999999999999999999999999998 89999999
Q ss_pred cCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCCCe
Q 014006 289 VDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGK 339 (432)
Q Consensus 289 i~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~ 339 (432)
+|++++||....+ -|...|+||+||+||..+|+
T Consensus 411 ip~ld~vIl~~p~------------------~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 411 IKNLHHVIFAHPS------------------KSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccEEEEecCC------------------cchhhhhhhhhccccCCCCC
Confidence 9999999975433 36778999999999996554
No 74
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=5.7e-34 Score=290.53 Aligned_cols=304 Identities=19% Similarity=0.188 Sum_probs=221.8
Q ss_pred hhhHHHHHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeee
Q 014006 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (432)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~ 84 (432)
.+.|.+++.+++.|+++.+..|||+||| +++|+++. ++..+++.|..+|..++...+ ...++......+..
T Consensus 266 R~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv~~L-~~~~I~a~~L~s~q 338 (941)
T KOG0351|consen 266 RPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQVTHL-SKKGIPACFLSSIQ 338 (941)
T ss_pred ChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHHHhh-hhcCcceeeccccc
Confidence 3568889999999999999999999999 77777654 338899999999999988877 33344333222211
Q ss_pred ee------ecccCC--CCceEEEcCHHHHHHHHh---cCCCCCC---CcEEEEeCCCc-----CCCCHHHHHHHHHHHHh
Q 014006 85 IR------FEDRTS--ERTLIKYLTDGVLLREIL---SNPDLSP---YSVIILDEAHE-----RSLNTDILLGLVKRLVN 145 (432)
Q Consensus 85 ~~------~~~~~~--~~~~i~v~T~~~l~~~l~---~~~~l~~---~~~vViDE~h~-----~~~~~~~~~~~l~~~~~ 145 (432)
.. ++.... ...+|+|.|||.+...-. ....+.. +..+||||||| +.|..+|.. +..+..
T Consensus 339 ~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~--l~~l~~ 416 (941)
T KOG0351|consen 339 TAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKR--LGLLRI 416 (941)
T ss_pred cHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHH--HHHHHh
Confidence 11 111112 368999999998753321 1113333 88999999999 445555543 444444
Q ss_pred hhcCCcEEEEEecccChHHHHhh---cc--CCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEe
Q 014006 146 LRASKLKILITSATLDGEKVSKF---FS--NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFM 220 (432)
Q Consensus 146 ~~~~~~~ii~~SAT~~~~~~~~~---~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~ 220 (432)
..+. +.+|++|||.+...-.+. ++ ++.++.................. ...............+.+.+||+|
T Consensus 417 ~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~---~~~~~~~~~~~~~~~~~~s~IIYC 492 (941)
T KOG0351|consen 417 RFPG-VPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTD---KDALLDILEESKLRHPDQSGIIYC 492 (941)
T ss_pred hCCC-CCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccC---ccchHHHHHHhhhcCCCCCeEEEe
Confidence 5554 899999999987653333 32 34444333322222222222121 112223333334456778999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCc
Q 014006 221 TGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (432)
Q Consensus 221 ~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~ 300 (432)
.++.+|+.++..|.+. ++.+..||+||+..+|..|.++|-.++++|+|||=++++|||.|||+.|||+++
T Consensus 493 ~sr~~ce~vs~~L~~~----------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~l 562 (941)
T KOG0351|consen 493 LSRKECEQVSAVLRSL----------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSL 562 (941)
T ss_pred CCcchHHHHHHHHHHh----------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCC
Confidence 9999999999999984 678889999999999999999999999999999999999999999999999999
Q ss_pred ccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
|+ |.+.|.|.+|||||. .+..|..+|.-.++..
T Consensus 563 Pk------------------s~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 563 PK------------------SFEGYYQEAGRAGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred ch------------------hHHHHHHhccccCcCCCcceeEEecchhHHHH
Confidence 88 888999999999999 6899999998877655
No 75
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-34 Score=258.21 Aligned_cols=310 Identities=20% Similarity=0.180 Sum_probs=227.6
Q ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCC--CCCcEEEecccchhhhHHHHHHHH---HHhCCccCCee
Q 014006 8 QYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGY--TKSGIIGVTQPRRVAAVSVARRVA---QELGVRLGEEV 81 (432)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~--~~~~~vl~~~P~~~l~~q~~~~~~---~~~~~~~~~~~ 81 (432)
++|.+-++.++++++++-.|.|||||| .++.+++..+.. ..+.+.+++.|+++|+.|..+.++ +..+.+....+
T Consensus 46 piqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ 125 (529)
T KOG0337|consen 46 PIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLV 125 (529)
T ss_pred chhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhc
Confidence 467778899999999999999999999 444444443322 346699999999999999877653 33345555566
Q ss_pred eeeeeecccC--CCCceEEEcCHHHHHHHHhcC-CCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q 014006 82 GYAIRFEDRT--SERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (432)
Q Consensus 82 g~~~~~~~~~--~~~~~i~v~T~~~l~~~l~~~-~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SA 158 (432)
|+....+... ..+++|+++|||++..+...- ..++.+.+||+||+| +.+.++|... +..++...+...|.++|||
T Consensus 126 ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfemgfqeq-l~e~l~rl~~~~QTllfSa 203 (529)
T KOG0337|consen 126 GGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEMGFQEQ-LHEILSRLPESRQTLLFSA 203 (529)
T ss_pred ccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhhhhHHH-HHHHHHhCCCcceEEEEec
Confidence 7544333332 467999999999998776433 378999999999999 8999988887 6777777777789999999
Q ss_pred ccChHH--HHh-hccCCCeeecCC--CCC-ceeEEeCCCCCcchHHHHHHHHHHHHh-cCCCCCEEEEeCCHHHHHHHHH
Q 014006 159 TLDGEK--VSK-FFSNCPTLNVPG--KLY-PVEILHSKERPTSYLESALKTAIDIHV-REPEGDVLIFMTGQDDIEKLVS 231 (432)
Q Consensus 159 T~~~~~--~~~-~~~~~~~i~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lvF~~t~~~~~~~~~ 231 (432)
|+|... +++ -+.++..+..+- +.. .++..+...... .....+..+.. .-.+.+++||++|+..++.+..
T Consensus 204 tlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a----~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ 279 (529)
T KOG0337|consen 204 TLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKA----EKEAALLSILGGRIKDKQTIVFVATKHHVEYVRG 279 (529)
T ss_pred cCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccH----HHHHHHHHHHhccccccceeEEecccchHHHHHH
Confidence 998652 222 222333333221 111 111111111111 12222222222 2224589999999999999999
Q ss_pred HHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCC
Q 014006 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (432)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~ 311 (432)
.|.+ .++.+..++|.|+++-|..-..+|+.++..++|.||+++||+|||-.+-|||+++|...
T Consensus 280 ll~~----------~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~------- 342 (529)
T KOG0337|consen 280 LLRD----------FGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDD------- 342 (529)
T ss_pred HHHh----------cCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCC-------
Confidence 9987 48888889999999999999999999999999999999999999999999999987533
Q ss_pred CccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 312 ~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
..|+||.||+.|. +.|.+|.++...+...
T Consensus 343 -----------klFvhRVgr~aragrtg~aYs~V~~~~~~y 372 (529)
T KOG0337|consen 343 -----------KLFVHRVGRVARAGRTGRAYSLVASTDDPY 372 (529)
T ss_pred -----------ceEEEEecchhhccccceEEEEEecccchh
Confidence 2677999999999 5899999987665433
No 76
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=3.9e-33 Score=294.83 Aligned_cols=292 Identities=14% Similarity=0.070 Sum_probs=193.2
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCC---ccCCee
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV---RLGEEV 81 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~---~~~~~~ 81 (432)
..+++|.+.++.+..|++++++||||||||+++..++.... ..+.++++++||++|+.|+++++.+.... .+....
T Consensus 80 ~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~-~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~ 158 (1176)
T PRK09401 80 KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLA-KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILY 158 (1176)
T ss_pred CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEE
Confidence 46889999999999999999999999999955433333222 34679999999999999999998665432 222222
Q ss_pred eeee-ee-c------ccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCC-----------HHHHHHHHHH
Q 014006 82 GYAI-RF-E------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLN-----------TDILLGLVKR 142 (432)
Q Consensus 82 g~~~-~~-~------~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~-----------~~~~~~~l~~ 142 (432)
|.+. .. + .......+|+|+||++|.+.+. .....+++++|||||| ++++ .+|....+..
T Consensus 159 g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD-~~L~~~k~id~~l~~lGF~~~~i~~ 236 (1176)
T PRK09401 159 YHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVD-AVLKSSKNIDKLLYLLGFSEEDIEK 236 (1176)
T ss_pred ccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChH-HhhhcccchhhHHHhCCCCHHHHHH
Confidence 2111 00 0 0012458999999999998765 2244569999999999 4553 2221122222
Q ss_pred HHhhh------------------------cCCcEEEEEecccChHHHH-hhccCCCeeecCCCC---CceeEEeCCCCCc
Q 014006 143 LVNLR------------------------ASKLKILITSATLDGEKVS-KFFSNCPTLNVPGKL---YPVEILHSKERPT 194 (432)
Q Consensus 143 ~~~~~------------------------~~~~~ii~~SAT~~~~~~~-~~~~~~~~i~~~~~~---~~~~~~~~~~~~~ 194 (432)
+.... ++..|++++|||+++..+. .++.+.-.+.+.... ..+...|....
T Consensus 237 i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~-- 314 (1176)
T PRK09401 237 AMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIVDE-- 314 (1176)
T ss_pred HHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEEEcc--
Confidence 22211 1257999999999865332 233332223332221 12222232211
Q ss_pred chHHHHHHHHHHHHhcCCCCCEEEEeCCHHH---HHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCC
Q 014006 195 SYLESALKTAIDIHVREPEGDVLIFMTGQDD---IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP 271 (432)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~ 271 (432)
+. ...+..+... .+.++||||++++. |+.++..|.. .++.+..+||+| + . .+++|++
T Consensus 315 ~k----~~~L~~ll~~-l~~~~LIFv~t~~~~~~ae~l~~~L~~----------~gi~v~~~hg~l---~-~-~l~~F~~ 374 (1176)
T PRK09401 315 DS----VEKLVELVKR-LGDGGLIFVPSDKGKEYAEELAEYLED----------LGINAELAISGF---E-R-KFEKFEE 374 (1176)
T ss_pred cH----HHHHHHHHHh-cCCCEEEEEecccChHHHHHHHHHHHH----------CCCcEEEEeCcH---H-H-HHHHHHC
Confidence 11 1122222222 23589999999777 9999999987 488999999999 2 2 3499999
Q ss_pred CccEEEEe----ecCcccccccCC-eEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccC
Q 014006 272 NCRRFIVS----TNIAETSLTVDG-VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG 333 (432)
Q Consensus 272 g~~~ilva----T~~~~~Gidi~~-v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaG 333 (432)
|+.+|||| ||+++||||+|+ |++||++|.|+...- .-....+.||.||+-
T Consensus 375 G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~------------~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 375 GEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFS------------LEEELAPPFLLLRLL 429 (1176)
T ss_pred CCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEe------------ccccccCHHHHHHHH
Confidence 99999999 699999999999 899999999985430 112235679999985
No 77
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=4.6e-33 Score=250.88 Aligned_cols=305 Identities=18% Similarity=0.177 Sum_probs=212.9
Q ss_pred hhHHHHHHH-HhcCCEEEEEcCCCCCHH--HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeee
Q 014006 8 QYEETIVET-VEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (432)
Q Consensus 8 ~~q~~i~~~-i~~~~~~ii~apTGsGKT--~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~ 84 (432)
..|+.++.. +..++++.++.|||+||| +++|.++. ++..+++.|..+|..++...+.+. ..++.......
T Consensus 23 ~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------~gITIV~SPLiALIkDQiDHL~~L-KVp~~SLNSKl 95 (641)
T KOG0352|consen 23 RLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------GGITIVISPLIALIKDQIDHLKRL-KVPCESLNSKL 95 (641)
T ss_pred hHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------CCeEEEehHHHHHHHHHHHHHHhc-CCchhHhcchh
Confidence 456666665 566789999999999999 67777654 347889999999999888776332 22222111100
Q ss_pred ee--------ecccCCCCceEEEcCHHHHH-----HHHhcCCCCCCCcEEEEeCCCc-----CCCCHHHHHHHHHHHHhh
Q 014006 85 IR--------FEDRTSERTLIKYLTDGVLL-----REILSNPDLSPYSVIILDEAHE-----RSLNTDILLGLVKRLVNL 146 (432)
Q Consensus 85 ~~--------~~~~~~~~~~i~v~T~~~l~-----~~l~~~~~l~~~~~vViDE~h~-----~~~~~~~~~~~l~~~~~~ 146 (432)
.. .-....+...++|.||++-. ..+..-..-..++++|+||||| +.+.+|++. +..+...
T Consensus 96 St~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~--LG~LRS~ 173 (641)
T KOG0352|consen 96 STVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLT--LGSLRSV 173 (641)
T ss_pred hHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhh--hhhHHhh
Confidence 00 01223466789999999643 2222112345688999999999 667777765 5666666
Q ss_pred hcCCcEEEEEecccChHHHHhhcc----CCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHh-------------
Q 014006 147 RASKLKILITSATLDGEKVSKFFS----NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHV------------- 209 (432)
Q Consensus 147 ~~~~~~ii~~SAT~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 209 (432)
.+. ..-++++||.+.++-.+.+. .-|+-.+....+.-..+|. ..-.+.+.+.+..+.+...
T Consensus 174 ~~~-vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD-~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~ 251 (641)
T KOG0352|consen 174 CPG-VPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYD-NHMKSFITDCLTVLADFSSSNLGKHEKASQNK 251 (641)
T ss_pred CCC-CceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHH-HHHHHHhhhHhHhHHHHHHHhcCChhhhhcCC
Confidence 664 88999999998865443332 2222222222222222211 1111222222222222211
Q ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCccccccc
Q 014006 210 REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV 289 (432)
Q Consensus 210 ~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi 289 (432)
....|..||||.|+++|++++-.|.. .+++...||+||...+|.++.+++.+|++-||+||..+++|+|.
T Consensus 252 K~~~GCGIVYCRTR~~cEq~AI~l~~----------~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDK 321 (641)
T KOG0352|consen 252 KTFTGCGIVYCRTRNECEQVAIMLEI----------AGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDK 321 (641)
T ss_pred CCcCcceEEEeccHHHHHHHHHHhhh----------cCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCC
Confidence 12246899999999999999999976 58999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 290 ~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
|+|++|||++.++ +.+-|.|..|||||. .+..|-..|++++...
T Consensus 322 p~VRFViHW~~~q------------------n~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 322 PDVRFVIHWSPSQ------------------NLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred cceeEEEecCchh------------------hhHHHHHhccccccCCCccceeeeecccchHH
Confidence 9999999988765 788999999999999 6788888888887765
No 78
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=3.5e-32 Score=284.68 Aligned_cols=317 Identities=20% Similarity=0.256 Sum_probs=209.7
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCc---cCC
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR---LGE 79 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~---~~~ 79 (432)
.++...||.++...+..+ ++++++|||+|||.++..++.......+.++++++|+++|+.|+.+.+.+.++.. +..
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~ 91 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVV 91 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEE
Confidence 467789999999988777 7889999999999433323222223456799999999999999999988877652 222
Q ss_pred eeeeeeeec-ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 80 EVGYAIRFE-DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 80 ~~g~~~~~~-~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
..|.....+ .......+|+++||+.+...+.... .+.++++||||||| +.........+.+......+ ..++++||
T Consensus 92 ~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH-~~~~~~~~~~i~~~~~~~~~-~~~il~lT 169 (773)
T PRK13766 92 FTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH-RAVGNYAYVYIAERYHEDAK-NPLVLGLT 169 (773)
T ss_pred EeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc-cccccccHHHHHHHHHhcCC-CCEEEEEE
Confidence 222111111 1112457899999999988775544 68899999999999 44433333333444433333 47899999
Q ss_pred cccCh--HHHHhhccCC--CeeecCCCC----------CceeEEeC----------------------------------
Q 014006 158 ATLDG--EKVSKFFSNC--PTLNVPGKL----------YPVEILHS---------------------------------- 189 (432)
Q Consensus 158 AT~~~--~~~~~~~~~~--~~i~~~~~~----------~~~~~~~~---------------------------------- 189 (432)
||+.. +.+...+.+. ..+.+.... ..+.....
T Consensus 170 aTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~ 249 (773)
T PRK13766 170 ASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSIS 249 (773)
T ss_pred cCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 99832 2222222110 000000000 00000000
Q ss_pred --------------------CCCCcc------------------------------h-----------------------
Q 014006 190 --------------------KERPTS------------------------------Y----------------------- 196 (432)
Q Consensus 190 --------------------~~~~~~------------------------------~----------------------- 196 (432)
...... +
T Consensus 250 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~ 329 (773)
T PRK13766 250 PDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVED 329 (773)
T ss_pred CCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhC
Confidence 000000 0
Q ss_pred -------------------HHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCC-
Q 014006 197 -------------------LESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGS- 256 (432)
Q Consensus 197 -------------------~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~- 256 (432)
+....+.+..+.....++++||||++++.++.+++.|.. .++.+..+||.
T Consensus 330 ~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~----------~~~~~~~~~g~~ 399 (773)
T PRK13766 330 PRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEK----------EGIKAVRFVGQA 399 (773)
T ss_pred HHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHh----------CCCceEEEEccc
Confidence 000000111111124667999999999999999999965 35666777765
Q ss_pred -------CCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhh
Q 014006 257 -------LPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRV 329 (432)
Q Consensus 257 -------l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~ 329 (432)
|++.+|.++++.|++|..+|||||+++++|+|+|++++||+|+.+. +...|+||+
T Consensus 400 ~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~------------------s~~r~iQR~ 461 (773)
T PRK13766 400 SKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVP------------------SEIRSIQRK 461 (773)
T ss_pred cccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCC------------------CHHHHHHHh
Confidence 9999999999999999999999999999999999999999977533 667899999
Q ss_pred cccCCCCCCeEEEecCccchh
Q 014006 330 GRAGRTRPGKCYRLYPSTVYH 350 (432)
Q Consensus 330 GRaGR~~~G~~~~l~~~~~~~ 350 (432)
||+||.++|.+|.|+.++..+
T Consensus 462 GR~gR~~~~~v~~l~~~~t~e 482 (773)
T PRK13766 462 GRTGRQEEGRVVVLIAKGTRD 482 (773)
T ss_pred cccCcCCCCEEEEEEeCCChH
Confidence 999999999999999765543
No 79
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4.4e-33 Score=272.38 Aligned_cols=326 Identities=14% Similarity=0.158 Sum_probs=238.2
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeee
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g 82 (432)
.+.+..+|.+++.++++|..+++.|+|.+|||..+...+.. ....+.+.+++.|.++|.+|.++.|++.|+. +|..+|
T Consensus 295 pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAial-aq~h~TR~iYTSPIKALSNQKfRDFk~tF~D-vgLlTG 372 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIAL-AQKHMTRTIYTSPIKALSNQKFRDFKETFGD-VGLLTG 372 (1248)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHH-HHhhccceEecchhhhhccchHHHHHHhccc-cceeec
Confidence 46788999999999999999999999999999655433332 2334679999999999999999999988863 445555
Q ss_pred eeeeecccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccC
Q 014006 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (432)
Q Consensus 83 ~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~ 161 (432)
+.+.++.+.++++|++.|.+++..+. .++++.+||+||+| -++.-....++..++-..|+.+++|++|||+|
T Consensus 373 -----DvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVH--YiND~eRGvVWEEViIMlP~HV~~IlLSATVP 445 (1248)
T KOG0947|consen 373 -----DVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH--YINDVERGVVWEEVIIMLPRHVNFILLSATVP 445 (1248)
T ss_pred -----ceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeee--ecccccccccceeeeeeccccceEEEEeccCC
Confidence 66778999999999999999997665 88999999999999 34444444456777777788899999999995
Q ss_pred h-HHHHhhccC-----CCeeecCCCCCceeEEeCCCCCc--------chH------------------------------
Q 014006 162 G-EKVSKFFSN-----CPTLNVPGKLYPVEILHSKERPT--------SYL------------------------------ 197 (432)
Q Consensus 162 ~-~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~--------~~~------------------------------ 197 (432)
. .+++.|.+. ..++....++.|.+.+....... .++
T Consensus 446 N~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rg 525 (1248)
T KOG0947|consen 446 NTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRG 525 (1248)
T ss_pred ChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccccccccccc
Confidence 4 679999974 23445556777766543211000 000
Q ss_pred -----------------------HH---HHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHh-------------
Q 014006 198 -----------------------ES---ALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIR------------- 238 (432)
Q Consensus 198 -----------------------~~---~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~------------- 238 (432)
.. .+-.++.......--|++|||=|++.|++.++.|...-.
T Consensus 526 s~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl 605 (1248)
T KOG0947|consen 526 SQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFL 605 (1248)
T ss_pred ccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHH
Confidence 00 011122222233345899999999999999999964311
Q ss_pred -----hccCC-----------CCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCccc
Q 014006 239 -----SLDEG-----------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVK 302 (432)
Q Consensus 239 -----~~~~~-----------~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~ 302 (432)
.++.. +...-+++.||||+-+--+.-++..|..|-++||+||.++++|+|+|.-++|+++=. |
T Consensus 606 ~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~-K 684 (1248)
T KOG0947|consen 606 SKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLR-K 684 (1248)
T ss_pred HHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehh-h
Confidence 11111 112235888999999999999999999999999999999999999998777776422 2
Q ss_pred ceeecCCCCCccceEeeecHhhHHHhhcccCCC---CCCeEEEecCcc
Q 014006 303 QRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPST 347 (432)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~---~~G~~~~l~~~~ 347 (432)
.|... ..-...-+|.||+|||||. ..|.++.+....
T Consensus 685 ---hDG~e------fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 685 ---HDGNE------FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred ---ccCcc------eeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 22221 2234566999999999999 469888887544
No 80
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.8e-32 Score=276.46 Aligned_cols=327 Identities=16% Similarity=0.176 Sum_probs=241.4
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCc---cCC
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR---LGE 79 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~---~~~ 79 (432)
.+.++.+|++.+..+.+|+.++++||||||||.+....+... ...+.+++++.|.++|.+|.++.+...++.. +|.
T Consensus 117 ~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~a-l~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL 195 (1041)
T COG4581 117 PFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALA-LRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGL 195 (1041)
T ss_pred CCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHH-HHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhccc
Confidence 367899999999999999999999999999995444333322 2345579999999999999999998888754 455
Q ss_pred eeeeeeeecccCCCCceEEEcCHHHHHHHHhcC-CCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q 014006 80 EVGYAIRFEDRTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (432)
Q Consensus 80 ~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~-~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SA 158 (432)
.+| +...++.+.++++|.+.|.+++..+ ..+.++..||+||+| .+-+.+. ...+...+-..|+.+++|+|||
T Consensus 196 ~TG-----Dv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvH-yi~D~eR-G~VWEE~Ii~lP~~v~~v~LSA 268 (1041)
T COG4581 196 MTG-----DVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVH-YIGDRER-GVVWEEVIILLPDHVRFVFLSA 268 (1041)
T ss_pred eec-----ceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeee-ecccccc-chhHHHHHHhcCCCCcEEEEeC
Confidence 555 5566788999999999999999776 489999999999999 3444433 3335666666777799999999
Q ss_pred cc-ChHHHHhhcc-----CCCeeecCCCCCceeEEeCCCCC--------cchHH----HHHH------------------
Q 014006 159 TL-DGEKVSKFFS-----NCPTLNVPGKLYPVEILHSKERP--------TSYLE----SALK------------------ 202 (432)
Q Consensus 159 T~-~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~----~~~~------------------ 202 (432)
|+ |+..++.|++ +..++..+.++.|...++..... .++.. .+..
T Consensus 269 Tv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 348 (1041)
T COG4581 269 TVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVG 348 (1041)
T ss_pred CCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccc
Confidence 99 5577999996 46677778888888776544311 10000 0000
Q ss_pred --------------------HHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHH-------------------HhhccCC
Q 014006 203 --------------------TAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDK-------------------IRSLDEG 243 (432)
Q Consensus 203 --------------------~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~-------------------~~~~~~~ 243 (432)
.+.........-++++|+=+++.|+..+..+... ...+...
T Consensus 349 ~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~e 428 (1041)
T COG4581 349 RYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEE 428 (1041)
T ss_pred cccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChh
Confidence 0111122233458999999999999999888621 1122221
Q ss_pred CC------------CCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCC
Q 014006 244 SC------------MDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (432)
Q Consensus 244 ~~------------~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~ 311 (432)
+. ..-+++.||+||-+..|..++..|..|.++|++||.+++.|+|+| .+.|+-+.+.| +|
T Consensus 429 d~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP-artvv~~~l~K---~d---- 500 (1041)
T COG4581 429 DRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP-ARTVVFTSLSK---FD---- 500 (1041)
T ss_pred hhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc-ccceeeeeeEE---ec----
Confidence 11 112366899999999999999999999999999999999999999 55555555544 33
Q ss_pred CccceEeeecHhhHHHhhcccCCC---CCCeEEEecCcc
Q 014006 312 MYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPST 347 (432)
Q Consensus 312 ~~~~~~~~~s~~~~~qr~GRaGR~---~~G~~~~l~~~~ 347 (432)
.-.-.|.+..+|.|+.|||||. ..|.++.+.++.
T Consensus 501 --G~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 501 --GNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred --CCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 2234688999999999999999 369999886443
No 81
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.8e-33 Score=268.93 Aligned_cols=327 Identities=14% Similarity=0.180 Sum_probs=241.9
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeee
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g 82 (432)
.+-+.++|...+..+.+++.++++|.|.+|||..+...+... .....+++++.|.++|.+|.++.+..+|+ .+|..+|
T Consensus 127 PF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~s-Lr~kQRVIYTSPIKALSNQKYREl~~EF~-DVGLMTG 204 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMS-LREKQRVIYTSPIKALSNQKYRELLEEFK-DVGLMTG 204 (1041)
T ss_pred CcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHH-HHhcCeEEeeChhhhhcchhHHHHHHHhc-ccceeec
Confidence 356789999999999999999999999999995544333322 12345999999999999999999988885 5677777
Q ss_pred eeeeecccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccC
Q 014006 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (432)
Q Consensus 83 ~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~ 161 (432)
+-..++.+.++|+|++.|.+++..+. .+..+.+||+||+| .+-|.+...- +..-+-..|++.+.+++|||+|
T Consensus 205 -----DVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH-YMRDkERGVV-WEETIIllP~~vr~VFLSATiP 277 (1041)
T KOG0948|consen 205 -----DVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH-YMRDKERGVV-WEETIILLPDNVRFVFLSATIP 277 (1041)
T ss_pred -----ceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeeh-hcccccccee-eeeeEEeccccceEEEEeccCC
Confidence 44557889999999999999997665 88999999999999 5666554433 3333345667799999999996
Q ss_pred h-HHHHhhcc-----CCCeeecCCCCCceeEEeCCC----------CCcchHHHHH------------------------
Q 014006 162 G-EKVSKFFS-----NCPTLNVPGKLYPVEILHSKE----------RPTSYLESAL------------------------ 201 (432)
Q Consensus 162 ~-~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~~------------------------ 201 (432)
. ..+++|.. -+.++..+.++.|++.+..+. .+..+-++.+
T Consensus 278 NA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~ 357 (1041)
T KOG0948|consen 278 NARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGR 357 (1041)
T ss_pred CHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccc
Confidence 6 56999985 367788888887776542221 1111111111
Q ss_pred --------------HHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhh------------------ccCCC-----
Q 014006 202 --------------KTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRS------------------LDEGS----- 244 (432)
Q Consensus 202 --------------~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~------------------~~~~~----- 244 (432)
..+..........++|||+-|+++|+..|-.+.+...+ ++..+
T Consensus 358 kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPq 437 (1041)
T KOG0948|consen 358 KGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQ 437 (1041)
T ss_pred cCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchH
Confidence 11111122334569999999999999999988654221 11110
Q ss_pred ------CCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEe
Q 014006 245 ------CMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVV 318 (432)
Q Consensus 245 ------~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~ 318 (432)
...-++..|||||-+--++-++-.|.+|-+++|+||.+++.|+|+|+-++|.- . .+.|| .-.-.
T Consensus 438 ie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT-~---~rKfD------G~~fR 507 (1041)
T KOG0948|consen 438 IENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT-A---VRKFD------GKKFR 507 (1041)
T ss_pred HHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe-e---ccccC------Cccee
Confidence 11224778999999999999999999999999999999999999997666653 1 12233 33457
Q ss_pred eecHhhHHHhhcccCCC---CCCeEEEecCccc
Q 014006 319 QISKVQANQRVGRAGRT---RPGKCYRLYPSTV 348 (432)
Q Consensus 319 ~~s~~~~~qr~GRaGR~---~~G~~~~l~~~~~ 348 (432)
|+|--+|+||.|||||. ..|.|+.++++.-
T Consensus 508 wissGEYIQMSGRAGRRG~DdrGivIlmiDekm 540 (1041)
T KOG0948|consen 508 WISSGEYIQMSGRAGRRGIDDRGIVILMIDEKM 540 (1041)
T ss_pred eecccceEEecccccccCCCCCceEEEEecCcC
Confidence 99999999999999999 4699999987653
No 82
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=4.2e-31 Score=264.55 Aligned_cols=320 Identities=18% Similarity=0.195 Sum_probs=218.6
Q ss_pred hhHHHHHHHHh-cCCEEEEEcCCCCCHH-HHHHHHHhhcCC---------CCCcEEEecccchhhhHHHHHHHHHHh---
Q 014006 8 QYEETIVETVE-QNPVVVVIGETGSGKS-TQLSQILHRHGY---------TKSGIIGVTQPRRVAAVSVARRVAQEL--- 73 (432)
Q Consensus 8 ~~q~~i~~~i~-~~~~~ii~apTGsGKT-~~~~~~~~~~~~---------~~~~~vl~~~P~~~l~~q~~~~~~~~~--- 73 (432)
..|-.+..+.. ...+++++||||+||| ..+..++..... ....+++++.|.++|++++...+++.+
T Consensus 312 rIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~ 391 (1674)
T KOG0951|consen 312 RIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPL 391 (1674)
T ss_pred HHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcccc
Confidence 44556666544 4569999999999999 444445544322 122388999999999999988776543
Q ss_pred CCccCCeeeeeeeecccCCCCceEEEcCHHHHHHHHhcCC---CCCCCcEEEEeCCCcCCCCHH-HHHHHHHHHHhh---
Q 014006 74 GVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNTD-ILLGLVKRLVNL--- 146 (432)
Q Consensus 74 ~~~~~~~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~---~l~~~~~vViDE~h~~~~~~~-~~~~~l~~~~~~--- 146 (432)
|++++...|. ..........++++++||+.---.-+++. ..+-++.+||||.|...-+.+ .+.++..+....
T Consensus 392 GI~V~ElTgD-~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses 470 (1674)
T KOG0951|consen 392 GITVLELTGD-SQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSES 470 (1674)
T ss_pred CcEEEEeccc-ccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhh
Confidence 4555555552 11122334678999999987643333322 455689999999994222222 344444444332
Q ss_pred hcCCcEEEEEecccCh-HHHHhhccCCC--eeec--CCCCCceeEEeCCCCCcchHH---HHHHHHHHH-HhcCCCCCEE
Q 014006 147 RASKLKILITSATLDG-EKVSKFFSNCP--TLNV--PGKLYPVEILHSKERPTSYLE---SALKTAIDI-HVREPEGDVL 217 (432)
Q Consensus 147 ~~~~~~ii~~SAT~~~-~~~~~~~~~~~--~i~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~l 217 (432)
...+.+++++|||+|. .+++.|+.-.+ ++.+ ..++.|++..|......+... ...+..++- ......+++|
T Consensus 471 ~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVL 550 (1674)
T KOG0951|consen 471 TEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVL 550 (1674)
T ss_pred cccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEE
Confidence 2346899999999965 66888775322 2223 457788887776554433322 222222221 2234457999
Q ss_pred EEeCCHHHHHHHHHHHHHHHh----------h-----------------ccCCCCCCeEEEEecCCCCHHHHhccCCCCC
Q 014006 218 IFMTGQDDIEKLVSKLEDKIR----------S-----------------LDEGSCMDAVILPLHGSLPPEMQVRVFSPPP 270 (432)
Q Consensus 218 vF~~t~~~~~~~~~~L~~~~~----------~-----------------~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~ 270 (432)
||+.+|+++-+.|+++++.+. . ..-.+...++++.||+||+..+|..+++.|+
T Consensus 551 VFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~ 630 (1674)
T KOG0951|consen 551 VFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFA 630 (1674)
T ss_pred EEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHh
Confidence 999999999999999985432 0 0001234567899999999999999999999
Q ss_pred CCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC
Q 014006 271 PNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR 336 (432)
Q Consensus 271 ~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~ 336 (432)
+|.++|+|+|.++++|+|+|+-+++|- ....|||+.|.- ...|..+.+||.|||||.+
T Consensus 631 ~g~iqvlvstatlawgvnlpahtViik----gtqvy~pekg~w----~elsp~dv~qmlgragrp~ 688 (1674)
T KOG0951|consen 631 DGHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYDPEKGRW----TELSPLDVMQMLGRAGRPQ 688 (1674)
T ss_pred cCceeEEEeehhhhhhcCCCcceEEec----CccccCcccCcc----ccCCHHHHHHHHhhcCCCc
Confidence 999999999999999999998888874 456899888632 2457888999999999993
No 83
>PRK14701 reverse gyrase; Provisional
Probab=99.97 E-value=6.4e-32 Score=291.30 Aligned_cols=310 Identities=13% Similarity=0.071 Sum_probs=199.4
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCC-----ccCC
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV-----RLGE 79 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~-----~~~~ 79 (432)
..++.|.+++..+.+|++++++||||||||++...+.... ...+.+++++.||++|+.|+++.+...... .+..
T Consensus 79 ~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~-~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~ 157 (1638)
T PRK14701 79 EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFL-ALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVY 157 (1638)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHH-HhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEE
Confidence 4578999999999999999999999999995322222222 124668999999999999999988664321 1111
Q ss_pred eeeeeeeecc------cCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCC-----------HHHHHHHHHH
Q 014006 80 EVGYAIRFED------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLN-----------TDILLGLVKR 142 (432)
Q Consensus 80 ~~g~~~~~~~------~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~-----------~~~~~~~l~~ 142 (432)
..|.....+. ......+|+|+||+++.+.+.... ..+++++||||||+ ++. .+|..++...
T Consensus 158 ~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~-~~~i~~iVVDEAD~-ml~~~knid~~L~llGF~~e~~~~ 235 (1638)
T PRK14701 158 YHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK-HLKFDFIFVDDVDA-FLKASKNIDRSLQLLGFYEEIIEK 235 (1638)
T ss_pred EeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh-hCCCCEEEEECcee-ccccccccchhhhcCCChHHHHHH
Confidence 1221111111 113458999999998887654322 26799999999995 432 2333332221
Q ss_pred ---H----------------------HhhhcCCcE-EEEEecccChH-HHHhhccCCCeeecCCCCC---ceeEEeCCCC
Q 014006 143 ---L----------------------VNLRASKLK-ILITSATLDGE-KVSKFFSNCPTLNVPGKLY---PVEILHSKER 192 (432)
Q Consensus 143 ---~----------------------~~~~~~~~~-ii~~SAT~~~~-~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~ 192 (432)
+ ....++..| ++++|||+++. ....++.+...+.+..... .+...|....
T Consensus 236 ~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~ 315 (1638)
T PRK14701 236 AWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGRSALRNIVDVYLNPE 315 (1638)
T ss_pred HHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCCCCCCCcEEEEEECC
Confidence 1 111233344 67799999863 4555665544454443321 1222222111
Q ss_pred CcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHH---HHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCC
Q 014006 193 PTSYLESALKTAIDIHVREPEGDVLIFMTGQDD---IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP 269 (432)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f 269 (432)
.... ..+..+.... +.++||||+|++. |+.++..|.+ .++.+..+||+ |..++++|
T Consensus 316 -~~~k----~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~----------~Gi~a~~~h~~-----R~~~l~~F 374 (1638)
T PRK14701 316 -KIIK----EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLE----------DGFKIELVSAK-----NKKGFDLF 374 (1638)
T ss_pred -HHHH----HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHH----------CCCeEEEecch-----HHHHHHHH
Confidence 1111 1233333222 4689999999886 4889999987 48999999985 88899999
Q ss_pred CCCccEEEEee----cCcccccccCC-eEEEEeCCccccee----ecCCCCCccceEeeecHhhHHHhhcccCCC-CCCe
Q 014006 270 PPNCRRFIVST----NIAETSLTVDG-VVYVIDCGYVKQRQ----YNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGK 339 (432)
Q Consensus 270 ~~g~~~ilvaT----~~~~~Gidi~~-v~~VI~~~~~~~~~----~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~ 339 (432)
++|+.+||||| ++++||||+|+ |++||++|+|+... |+...... .. .....++.||+||. .++.
T Consensus 375 ~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~--~~----~~~~~~~~~~a~~~g~~~~ 448 (1638)
T PRK14701 375 EEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRI--LG----LLSEILKIEEELKEGIPIE 448 (1638)
T ss_pred HcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhh--hc----chHHHHHhhhhcccCCcch
Confidence 99999999999 58999999999 99999999999442 22111110 00 12345678999998 4666
Q ss_pred EEEec
Q 014006 340 CYRLY 344 (432)
Q Consensus 340 ~~~l~ 344 (432)
++..+
T Consensus 449 ~~~~~ 453 (1638)
T PRK14701 449 GVLDV 453 (1638)
T ss_pred hHHHh
Confidence 65433
No 84
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.97 E-value=1.2e-30 Score=276.50 Aligned_cols=277 Identities=16% Similarity=0.134 Sum_probs=184.9
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhC---CccC--
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG---VRLG-- 78 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~---~~~~-- 78 (432)
...+++|.+.+..+..|++++++||||||||+++..++.... ..+.+++++.||++|+.|+++.+.+... ....
T Consensus 77 ~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~-~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i 155 (1171)
T TIGR01054 77 SEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLA-KKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNI 155 (1171)
T ss_pred CCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeee
Confidence 356889999999999999999999999999965443433322 2467899999999999999998866542 2211
Q ss_pred -Ceeeeeeeecc------cCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCC-----------HHHHHHHH
Q 014006 79 -EEVGYAIRFED------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLN-----------TDILLGLV 140 (432)
Q Consensus 79 -~~~g~~~~~~~------~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~-----------~~~~~~~l 140 (432)
..+|.....+. ......+|+|+||++|.+.+..-. .+++++|+|||| ++++ .+|..+.+
T Consensus 156 ~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~~~~~iVvDEaD-~~L~~~k~vd~il~llGF~~e~i 232 (1171)
T TIGR01054 156 GAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--PKFDFIFVDDVD-ALLKASKNVDKLLKLLGFSEELI 232 (1171)
T ss_pred eeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--CCCCEEEEeChH-hhhhccccHHHHHHHcCCCHHHH
Confidence 12232111111 122458999999999987765322 289999999999 5555 22222212
Q ss_pred HHH----------------------HhhhcCCcE--EEEEeccc-ChHHHHhhccCCCeeecCCCC---CceeEEeCCCC
Q 014006 141 KRL----------------------VNLRASKLK--ILITSATL-DGEKVSKFFSNCPTLNVPGKL---YPVEILHSKER 192 (432)
Q Consensus 141 ~~~----------------------~~~~~~~~~--ii~~SAT~-~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~ 192 (432)
..+ ....++..| ++++|||. +...-..++.+...+.+.... ..+...+....
T Consensus 233 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~~~~~~ 312 (1171)
T TIGR01054 233 EKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDVYVEDE 312 (1171)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccccccceEEEEEecc
Confidence 221 112233333 67789995 433222344443334433322 12223332211
Q ss_pred CcchHHHHHHHHHHHHhcCCCCCEEEEeCCH---HHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCC
Q 014006 193 PTSYLESALKTAIDIHVREPEGDVLIFMTGQ---DDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP 269 (432)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~---~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f 269 (432)
. ... .+..+... .+.++||||+|+ +.|+.++..|.+ .++.+..+||+++. .++++|
T Consensus 313 ~--~~~----~L~~ll~~-l~~~~IVFv~t~~~~~~a~~l~~~L~~----------~g~~a~~lhg~~~~----~~l~~F 371 (1171)
T TIGR01054 313 D--LKE----TLLEIVKK-LGTGGIVYVSIDYGKEKAEEIAEFLEN----------HGVKAVAYHATKPK----EDYEKF 371 (1171)
T ss_pred c--HHH----HHHHHHHH-cCCCEEEEEeccccHHHHHHHHHHHHh----------CCceEEEEeCCCCH----HHHHHH
Confidence 1 111 12222222 246899999999 999999999987 48899999999973 578999
Q ss_pred CCCccEEEEe----ecCcccccccCC-eEEEEeCCccccee
Q 014006 270 PPNCRRFIVS----TNIAETSLTVDG-VVYVIDCGYVKQRQ 305 (432)
Q Consensus 270 ~~g~~~ilva----T~~~~~Gidi~~-v~~VI~~~~~~~~~ 305 (432)
++|+.+|||| ||+++||||+|+ |++||++|.|+...
T Consensus 372 r~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 372 AEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFKV 412 (1171)
T ss_pred HcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEEE
Confidence 9999999999 499999999999 89999999998764
No 85
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=1.4e-29 Score=259.39 Aligned_cols=297 Identities=20% Similarity=0.182 Sum_probs=182.9
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhh-cCCCCCcEEEecccchhhhHHHHHHHHH----HhC-CccCC
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHR-HGYTKSGIIGVTQPRRVAAVSVARRVAQ----ELG-VRLGE 79 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~-~~~~~~~~vl~~~P~~~l~~q~~~~~~~----~~~-~~~~~ 79 (432)
-+++|+.+.+....+..++|.||||+|||..+..++.. .......++++..||++.++++++++.+ .++ ..+..
T Consensus 287 p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L 366 (878)
T PRK09694 287 PRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPNLIL 366 (878)
T ss_pred ChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEe
Confidence 46778877655455778999999999999332222222 2233446899999999999999999864 222 22333
Q ss_pred eeeeeeee---cc---------------------c--CC---CCceEEEcCHHHHHHHHhcCC--CCCCC----cEEEEe
Q 014006 80 EVGYAIRF---ED---------------------R--TS---ERTLIKYLTDGVLLREILSNP--DLSPY----SVIILD 124 (432)
Q Consensus 80 ~~g~~~~~---~~---------------------~--~~---~~~~i~v~T~~~l~~~l~~~~--~l~~~----~~vViD 124 (432)
.+|..... .. . .. --..++|+|..+++...+... .+..+ ++||||
T Consensus 367 ~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiD 446 (878)
T PRK09694 367 AHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVD 446 (878)
T ss_pred ecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEe
Confidence 33322100 00 0 00 126899999998886654432 22223 489999
Q ss_pred CCCcCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecccChHHHHhhc---cCC---------CeeecCC----CCC-----
Q 014006 125 EAHERSLNTDILLGLVKRLVNLR-ASKLKILITSATLDGEKVSKFF---SNC---------PTLNVPG----KLY----- 182 (432)
Q Consensus 125 E~h~~~~~~~~~~~~l~~~~~~~-~~~~~ii~~SAT~~~~~~~~~~---~~~---------~~i~~~~----~~~----- 182 (432)
|+| .++.. ...++..+++.. ..+.++|+||||+|....++++ +.. +.+.... ..+
T Consensus 447 EVH--AyD~y-m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~ 523 (878)
T PRK09694 447 EVH--AYDAY-MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAH 523 (878)
T ss_pred chh--hCCHH-HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecccc
Confidence 999 55553 333344443322 2357899999999875432222 211 1111100 000
Q ss_pred ------c--eeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEec
Q 014006 183 ------P--VEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLH 254 (432)
Q Consensus 183 ------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h 254 (432)
+ +................++.+.... ..++++||||||++.|+++++.|++... ....+..+|
T Consensus 524 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~-------~~~~v~llH 594 (878)
T PRK09694 524 PEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELNN-------TQVDIDLFH 594 (878)
T ss_pred ccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhCC-------CCceEEEEe
Confidence 0 0000000000011122333333222 3567999999999999999999986410 235789999
Q ss_pred CCCCHHHHh----ccCCCC-CCCc---cEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHH
Q 014006 255 GSLPPEMQV----RVFSPP-PPNC---RRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQAN 326 (432)
Q Consensus 255 ~~l~~~~r~----~~~~~f-~~g~---~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 326 (432)
|+++..+|. ++++.| ++|+ .+|||||+++|+|+|++ ++++|... .+..+++
T Consensus 595 srf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItdl--------------------aPidsLi 653 (878)
T PRK09694 595 ARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQL--------------------CPVDLLF 653 (878)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEECC--------------------CCHHHHH
Confidence 999999994 456677 5665 47999999999999996 78888522 2356999
Q ss_pred HhhcccCCC
Q 014006 327 QRVGRAGRT 335 (432)
Q Consensus 327 qr~GRaGR~ 335 (432)
||+||+||.
T Consensus 654 QRaGR~~R~ 662 (878)
T PRK09694 654 QRLGRLHRH 662 (878)
T ss_pred HHHhccCCC
Confidence 999999998
No 86
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.97 E-value=3.1e-29 Score=250.02 Aligned_cols=108 Identities=18% Similarity=0.119 Sum_probs=94.1
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccC
Q 014006 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (432)
Q Consensus 211 ~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~ 290 (432)
..+.++||||+|++.++.++..|.+ .++.+..+||.+.++++..+..++++| .|+||||+++||+||+
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~----------~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~ 489 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLR----------EGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIK 489 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHH----------CCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCC
Confidence 4567999999999999999999987 478888999999999998888888887 7999999999999999
Q ss_pred ---------CeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccch
Q 014006 291 ---------GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (432)
Q Consensus 291 ---------~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~ 349 (432)
++.+|++++.|. .... .||+|||||. .+|.++.+++.++.
T Consensus 490 l~~~v~~~GGL~vIit~~~ps------------------~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 490 LGKGVAELGGLAVIGTERMEN------------------SRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred CCccccccCCeEEEEecCCCC------------------cHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 999999987764 2223 8999999999 68999999876543
No 87
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.3e-29 Score=255.06 Aligned_cols=109 Identities=21% Similarity=0.185 Sum_probs=96.7
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCccccccc-
Q 014006 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV- 289 (432)
Q Consensus 211 ~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi- 289 (432)
..+.++||||+|++.++.++..|.+ .++.+..+||.+...++..+..++++| +|+||||+++||+||
T Consensus 426 ~~~~pvLIf~~t~~~se~l~~~L~~----------~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~ 493 (790)
T PRK09200 426 ETGRPVLIGTGSIEQSETFSKLLDE----------AGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIK 493 (790)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHH----------CCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCC
Confidence 3567999999999999999999987 488899999999999988888888777 799999999999999
Q ss_pred --CCeE-----EEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccch
Q 014006 290 --DGVV-----YVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (432)
Q Consensus 290 --~~v~-----~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~ 349 (432)
++|. +||++++|. |...|.||+||+||. .+|.++.+++.++.
T Consensus 494 l~~~V~~~GGL~VI~~d~p~------------------s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 494 LGEGVHELGGLAVIGTERME------------------SRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred cccccccccCcEEEeccCCC------------------CHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 6998 999998866 667999999999999 68999999876543
No 88
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.3e-29 Score=248.11 Aligned_cols=306 Identities=18% Similarity=0.106 Sum_probs=191.5
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHH---HhCCccCCee
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ---ELGVRLGEEV 81 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~---~~~~~~~~~~ 81 (432)
-+..|...+..+.+|+ |..+.||+||| +++.+++... ..+..+.++.|+++||.|.++.+.. .++.+++...
T Consensus 104 p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~a--l~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~ 179 (656)
T PRK12898 104 HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAA--LAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVV 179 (656)
T ss_pred CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHh--hcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 3577888888889998 88999999999 4443333332 3467899999999999999888754 4466666665
Q ss_pred eeeeeecccCCCCceEEEcCHHHH-HHHHhcC--------------------------CCCCCCcEEEEeCCCcCCCC--
Q 014006 82 GYAIRFEDRTSERTLIKYLTDGVL-LREILSN--------------------------PDLSPYSVIILDEAHERSLN-- 132 (432)
Q Consensus 82 g~~~~~~~~~~~~~~i~v~T~~~l-~~~l~~~--------------------------~~l~~~~~vViDE~h~~~~~-- 132 (432)
|.......+..-.++|+|+|...+ .+++..+ .....+.+.||||+|-..+|
T Consensus 180 gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDea 259 (656)
T PRK12898 180 EDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEA 259 (656)
T ss_pred CCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccceeeccC
Confidence 543222223335689999998766 2333221 12456788999998861111
Q ss_pred ---------------HHHHHHHHHHHHhhhcC--------C---------------------------------------
Q 014006 133 ---------------TDILLGLVKRLVNLRAS--------K--------------------------------------- 150 (432)
Q Consensus 133 ---------------~~~~~~~l~~~~~~~~~--------~--------------------------------------- 150 (432)
...+.. ...+...... +
T Consensus 260 rtpliis~~~~~~~~~~~y~~-~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al 338 (656)
T PRK12898 260 RTPLIISAPAKEADEAEVYRQ-ALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQAL 338 (656)
T ss_pred CCceEEECCCCCCchhHHHHH-HHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHH
Confidence 111111 1111110000 0
Q ss_pred ----------------------------------------------------------------------cEEEEEeccc
Q 014006 151 ----------------------------------------------------------------------LKILITSATL 160 (432)
Q Consensus 151 ----------------------------------------------------------------------~~ii~~SAT~ 160 (432)
.++-+||||.
T Consensus 339 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa 418 (656)
T PRK12898 339 SALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTA 418 (656)
T ss_pred HHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcC
Confidence 3445555555
Q ss_pred ChH--HHHhhccCCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHh--cCCCCCEEEEeCCHHHHHHHHHHHHHH
Q 014006 161 DGE--KVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHV--REPEGDVLIFMTGQDDIEKLVSKLEDK 236 (432)
Q Consensus 161 ~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lvF~~t~~~~~~~~~~L~~~ 236 (432)
... ++.+.++ ..++.++................ ........+..... ...+.++||||+|++.++.++..|.+
T Consensus 419 ~~~~~El~~~y~-l~vv~IPt~kp~~r~~~~~~v~~-t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~- 495 (656)
T PRK12898 419 REVAGELWSVYG-LPVVRIPTNRPSQRRHLPDEVFL-TAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLRE- 495 (656)
T ss_pred hHHHHHHHHHHC-CCeEEeCCCCCccceecCCEEEe-CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH-
Confidence 432 2333332 22333332111110000000000 01112222222221 12356899999999999999999987
Q ss_pred HhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccC---CeE-----EEEeCCcccceeecC
Q 014006 237 IRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD---GVV-----YVIDCGYVKQRQYNP 308 (432)
Q Consensus 237 ~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~---~v~-----~VI~~~~~~~~~~~~ 308 (432)
.++.+..+||.+...++..+..+++. ..|+||||+++||+||+ +|. +||++++|.
T Consensus 496 ---------~gi~~~~Lhg~~~~rE~~ii~~ag~~--g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~------ 558 (656)
T PRK12898 496 ---------AGLPHQVLNAKQDAEEAAIVARAGQR--GRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHD------ 558 (656)
T ss_pred ---------CCCCEEEeeCCcHHHHHHHHHHcCCC--CcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCC------
Confidence 48889999999776666555555444 46999999999999999 776 999998866
Q ss_pred CCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccc
Q 014006 309 SSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (432)
Q Consensus 309 ~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~ 348 (432)
|...|.||+||+||. .+|.++.+++.++
T Consensus 559 ------------s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 559 ------------SARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred ------------CHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 667899999999999 6899999998654
No 89
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=5.2e-29 Score=248.38 Aligned_cols=305 Identities=15% Similarity=0.114 Sum_probs=193.8
Q ss_pred CCchhhhHHHHHHHHhc-C--CEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCC
Q 014006 3 NLPILQYEETIVETVEQ-N--PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~-~--~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~ 79 (432)
...+++||++.++.+.. | +.-++++|||+|||.+...++... +.+++|++|+..++.|..+.+.+++......
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQ 328 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHHHHHHhcCCCCce
Confidence 35678999999998774 3 367889999999995544444333 3578999999999999999998876543322
Q ss_pred eeeeeeeecccCCCCceEEEcCHHHHHHHHhc---------CCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCC
Q 014006 80 EVGYAIRFEDRTSERTLIKYLTDGVLLREILS---------NPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (432)
Q Consensus 80 ~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~---------~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~ 150 (432)
...+.............|+++|+.++...... ...-..+++||+|||| +.. ...+..++.. ...
T Consensus 329 I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH-~lp-A~~fr~il~~----l~a- 401 (732)
T TIGR00603 329 ICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVH-VVP-AAMFRRVLTI----VQA- 401 (732)
T ss_pred EEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccc-ccc-HHHHHHHHHh----cCc-
Confidence 21111111111123468999999877532211 1112468899999999 443 3333322322 222
Q ss_pred cEEEEEecccChH--H---HHhhccCCCeeec-------CCCCCceeE--EeCCCCCcc---hH--------------HH
Q 014006 151 LKILITSATLDGE--K---VSKFFSNCPTLNV-------PGKLYPVEI--LHSKERPTS---YL--------------ES 199 (432)
Q Consensus 151 ~~ii~~SAT~~~~--~---~~~~~~~~~~i~~-------~~~~~~~~~--~~~~~~~~~---~~--------------~~ 199 (432)
...+++|||+..+ . +..++ ++.+... .+-..+++. .+.+-.... |+ ..
T Consensus 402 ~~RLGLTATP~ReD~~~~~L~~Li-GP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~ 480 (732)
T TIGR00603 402 HCKLGLTATLVREDDKITDLNFLI-GPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPN 480 (732)
T ss_pred CcEEEEeecCcccCCchhhhhhhc-CCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChH
Confidence 4579999999432 1 22223 3333332 122222221 111111100 00 01
Q ss_pred HHHHHHHHHh--cCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCC-ccEE
Q 014006 200 ALKTAIDIHV--REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRRF 276 (432)
Q Consensus 200 ~~~~~~~~~~--~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g-~~~i 276 (432)
.+..+..+.. ...+.++||||.+...++.+++.|. +..+||+++..+|.++++.|+.| .+++
T Consensus 481 K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~---------------~~~I~G~ts~~ER~~il~~Fr~~~~i~v 545 (732)
T TIGR00603 481 KFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG---------------KPFIYGPTSQQERMQILQNFQHNPKVNT 545 (732)
T ss_pred HHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC---------------CceEECCCCHHHHHHHHHHHHhCCCccE
Confidence 1111111221 1356799999999998888877662 23489999999999999999875 7899
Q ss_pred EEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCC-CeE-------EEecCccc
Q 014006 277 IVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRP-GKC-------YRLYPSTV 348 (432)
Q Consensus 277 lvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~-G~~-------~~l~~~~~ 348 (432)
||+|+++.+|||+|++++||+.+.+ +-|..+|+||+||++|.++ |.+ |.|++++.
T Consensus 546 Lv~SkVgdeGIDlP~a~vvI~~s~~-----------------~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 546 IFLSKVGDTSIDLPEANVLIQISSH-----------------YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred EEEecccccccCCCCCCEEEEeCCC-----------------CCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 9999999999999999999985532 1277899999999999954 343 88887765
Q ss_pred hhh
Q 014006 349 YHD 351 (432)
Q Consensus 349 ~~~ 351 (432)
.+.
T Consensus 609 ~E~ 611 (732)
T TIGR00603 609 QEM 611 (732)
T ss_pred hHH
Confidence 543
No 90
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=5e-29 Score=253.41 Aligned_cols=312 Identities=18% Similarity=0.196 Sum_probs=203.2
Q ss_pred CchhhhHHHHHHHHhcC---CEEEEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCC
Q 014006 4 LPILQYEETIVETVEQN---PVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~---~~~ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~ 79 (432)
..+++.|+++++.+.++ +++++.|+|||||| .++..+.... ..+.++++++|+++|+.|+++++.+.++..+..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l--~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~ 220 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVL--AQGKQALVLVPEIALTPQMLARFRARFGAPVAV 220 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEE
Confidence 45788999999999874 78999999999999 4443333322 236789999999999999999998888876655
Q ss_pred eeeeeeeec------ccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHH-----HHHHHHHHHhhhc
Q 014006 80 EVGYAIRFE------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI-----LLGLVKRLVNLRA 148 (432)
Q Consensus 80 ~~g~~~~~~------~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~-----~~~~l~~~~~~~~ 148 (432)
.+|.....+ .......+|+++|++.+. ..+.++++|||||+|...+.... ... +..... ..
T Consensus 221 ~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~-va~~ra-~~ 292 (679)
T PRK05580 221 LHSGLSDGERLDEWRKAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD-LAVVRA-KL 292 (679)
T ss_pred EECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCccccccCcCCCCcHHH-HHHHHh-hc
Confidence 555322211 112356799999997653 24688999999999964332221 112 112222 23
Q ss_pred CCcEEEEEecccChHHHHhhccC-CCeeecCCCC----Cc-eeEEeCCCC----C-cchHHHHHHHHHHHHhcCCCCCEE
Q 014006 149 SKLKILITSATLDGEKVSKFFSN-CPTLNVPGKL----YP-VEILHSKER----P-TSYLESALKTAIDIHVREPEGDVL 217 (432)
Q Consensus 149 ~~~~ii~~SAT~~~~~~~~~~~~-~~~i~~~~~~----~~-~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~l 217 (432)
.+.+++++|||++.+.+.....+ ...+....+. .| +........ . .......++.+.+.. ..++++|
T Consensus 293 ~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l--~~g~qvl 370 (679)
T PRK05580 293 ENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRL--ERGEQVL 370 (679)
T ss_pred cCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHH--HcCCeEE
Confidence 45899999999987766544322 2233333221 12 222221110 0 001122222222222 3456899
Q ss_pred EEeCCHH------------------------------------------------------------HHHHHHHHHHHHH
Q 014006 218 IFMTGQD------------------------------------------------------------DIEKLVSKLEDKI 237 (432)
Q Consensus 218 vF~~t~~------------------------------------------------------------~~~~~~~~L~~~~ 237 (432)
||+|++. .++++++.|.+.
T Consensus 371 l~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~- 449 (679)
T PRK05580 371 LFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAEL- 449 (679)
T ss_pred EEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHh-
Confidence 9988642 445555555554
Q ss_pred hhccCCCCCCeEEEEecCCCC--HHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEE--eCCccc-ceeecCCCCC
Q 014006 238 RSLDEGSCMDAVILPLHGSLP--PEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVI--DCGYVK-QRQYNPSSGM 312 (432)
Q Consensus 238 ~~~~~~~~~~~~~~~~h~~l~--~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI--~~~~~~-~~~~~~~~~~ 312 (432)
.++.++..+|+++. .+++++++++|++|+.+|||+|+++++|+|+|+|++|+ |.|.+- .+.|..
T Consensus 450 -------fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra---- 518 (679)
T PRK05580 450 -------FPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRA---- 518 (679)
T ss_pred -------CCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccch----
Confidence 35778899999986 46788999999999999999999999999999999884 555331 112221
Q ss_pred ccceEeeecHhhHHHhhcccCCC-CCCeEEEec
Q 014006 313 YSLDVVQISKVQANQRVGRAGRT-RPGKCYRLY 344 (432)
Q Consensus 313 ~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~ 344 (432)
.--....|.|++||+||. .+|.++..-
T Consensus 519 -----~Er~~~~l~q~~GRagR~~~~g~viiqT 546 (679)
T PRK05580 519 -----SERTFQLLTQVAGRAGRAEKPGEVLIQT 546 (679)
T ss_pred -----HHHHHHHHHHHHhhccCCCCCCEEEEEe
Confidence 112456899999999997 789988543
No 91
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.96 E-value=2.6e-28 Score=217.40 Aligned_cols=304 Identities=17% Similarity=0.173 Sum_probs=211.5
Q ss_pred hhhHHHHHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeee
Q 014006 7 LQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (432)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~ 84 (432)
.+.|.+.+++...+++.++..|||.||| +++|.++. .+-.+++.|...|..++.-.+. .+|+........+
T Consensus 96 rplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------dg~alvi~plislmedqil~lk-qlgi~as~lnans 168 (695)
T KOG0353|consen 96 RPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVICPLISLMEDQILQLK-QLGIDASMLNANS 168 (695)
T ss_pred ChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------CCceEeechhHHHHHHHHHHHH-HhCcchhhccCcc
Confidence 4678899999999999999999999999 77777754 3468899999999988776663 3444332222111
Q ss_pred eeec--------ccCCCCceEEEcCHHHHHHH------HhcCCCCCCCcEEEEeCCCc-----CCCCHHH-HHHHHHHHH
Q 014006 85 IRFE--------DRTSERTLIKYLTDGVLLRE------ILSNPDLSPYSVIILDEAHE-----RSLNTDI-LLGLVKRLV 144 (432)
Q Consensus 85 ~~~~--------~~~~~~~~i~v~T~~~l~~~------l~~~~~l~~~~~vViDE~h~-----~~~~~~~-~~~~l~~~~ 144 (432)
...+ ...++...++|.||+.+... +........+..+-|||+|| +.+.+++ .+.+++
T Consensus 169 ske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilk--- 245 (695)
T KOG0353|consen 169 SKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILK--- 245 (695)
T ss_pred cHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHH---
Confidence 1111 12345678999999987532 22223567788999999999 5556665 333333
Q ss_pred hhhcCCcEEEEEecccChHHH---HhhccCCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHH-hcCCCCCEEEEe
Q 014006 145 NLRASKLKILITSATLDGEKV---SKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIH-VREPEGDVLIFM 220 (432)
Q Consensus 145 ~~~~~~~~ii~~SAT~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lvF~ 220 (432)
+..+ +..+++++||.....+ ++.++-...+.+..........|........-+...+.+.... ....+...||||
T Consensus 246 rqf~-~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc 324 (695)
T KOG0353|consen 246 RQFK-GAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYC 324 (695)
T ss_pred HhCC-CCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEE
Confidence 3444 4889999999976543 3333211112211111111112211111111222333333322 234455789999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCc
Q 014006 221 TGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (432)
Q Consensus 221 ~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~ 300 (432)
-+++++++++..|+. .++....||+.|.+++|..+-+.+..|++.|+|||-++++|||.|+|++|||-.+
T Consensus 325 ~sq~d~ekva~alkn----------~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl 394 (695)
T KOG0353|consen 325 FSQKDCEKVAKALKN----------HGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSL 394 (695)
T ss_pred eccccHHHHHHHHHh----------cCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEeccc
Confidence 999999999999987 4888999999999999999999999999999999999999999999999999777
Q ss_pred ccceeecCCCCCccceEeeecHhhHHH-------------------------------------------hhcccCCC-C
Q 014006 301 VKQRQYNPSSGMYSLDVVQISKVQANQ-------------------------------------------RVGRAGRT-R 336 (432)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~s~~~~~q-------------------------------------------r~GRaGR~-~ 336 (432)
|+ |.++|.| ..|||||. .
T Consensus 395 ~k------------------sienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~ 456 (695)
T KOG0353|consen 395 PK------------------SIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDM 456 (695)
T ss_pred ch------------------hHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCC
Confidence 66 6677777 88999999 7
Q ss_pred CCeEEEecCccch
Q 014006 337 PGKCYRLYPSTVY 349 (432)
Q Consensus 337 ~G~~~~l~~~~~~ 349 (432)
+..|+..|.-.+.
T Consensus 457 ~a~cilyy~~~di 469 (695)
T KOG0353|consen 457 KADCILYYGFADI 469 (695)
T ss_pred cccEEEEechHHH
Confidence 8889988854443
No 92
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.3e-27 Score=210.40 Aligned_cols=292 Identities=21% Similarity=0.252 Sum_probs=197.9
Q ss_pred HHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhC-CccCCeeeeeeeecc
Q 014006 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG-VRLGEEVGYAIRFED 89 (432)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~-~~~~~~~g~~~~~~~ 89 (432)
+.+++.+.+.++.++.|-||+|||-++-+.+... ...|.++.+..|+...+.+++.++.+.|. ..+....|. +
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~a-l~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~-----S 180 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQA-LNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGD-----S 180 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHH-HhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecC-----C
Confidence 3466778899999999999999994433333222 24578999999999999999999988775 555555552 2
Q ss_pred cCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 90 RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 90 ~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
...-+..++|+|...|++.-. .++++||||+|.-.+..+-.+. -.+.+.+..+.-.|.+|||.+.+...+..
T Consensus 181 ~~~fr~plvVaTtHQLlrFk~------aFD~liIDEVDAFP~~~d~~L~--~Av~~ark~~g~~IylTATp~k~l~r~~~ 252 (441)
T COG4098 181 DSYFRAPLVVATTHQLLRFKQ------AFDLLIIDEVDAFPFSDDQSLQ--YAVKKARKKEGATIYLTATPTKKLERKIL 252 (441)
T ss_pred chhccccEEEEehHHHHHHHh------hccEEEEeccccccccCCHHHH--HHHHHhhcccCceEEEecCChHHHHHHhh
Confidence 222347899999998887643 4789999999975555554443 22223333446799999998765444443
Q ss_pred c-CCCeeecCC----CCCceeEEeCCCCCcchH-----HHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhh
Q 014006 170 S-NCPTLNVPG----KLYPVEILHSKERPTSYL-----ESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRS 239 (432)
Q Consensus 170 ~-~~~~i~~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~ 239 (432)
. +...+.++. ++.|+........-...+ ...+...+.. +...+.++|||+|+....++++..|+..+
T Consensus 253 ~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lek-q~~~~~P~liF~p~I~~~eq~a~~lk~~~-- 329 (441)
T COG4098 253 KGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEK-QRKTGRPVLIFFPEIETMEQVAAALKKKL-- 329 (441)
T ss_pred hCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHH-HHhcCCcEEEEecchHHHHHHHHHHHhhC--
Confidence 2 222344433 333332221111111111 1122222221 13345799999999999999999997753
Q ss_pred ccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEee
Q 014006 240 LDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQ 319 (432)
Q Consensus 240 ~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~ 319 (432)
+...++..||.- ..|.+..+.|++|+.++|++|+++|||+++|+|++.|-- ++ ...
T Consensus 330 ------~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlg---------ae-------h~v 385 (441)
T COG4098 330 ------PKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLG---------AE-------HRV 385 (441)
T ss_pred ------CccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEec---------CC-------ccc
Confidence 556677888753 568888999999999999999999999999999987731 11 112
Q ss_pred ecHhhHHHhhcccCCC--CC-CeEEEe
Q 014006 320 ISKVQANQRVGRAGRT--RP-GKCYRL 343 (432)
Q Consensus 320 ~s~~~~~qr~GRaGR~--~~-G~~~~l 343 (432)
-|.+..+|.+||+||. .| |.++.+
T Consensus 386 fTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 386 FTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred ccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 3788999999999999 33 665544
No 93
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.96 E-value=2.8e-28 Score=241.71 Aligned_cols=109 Identities=20% Similarity=0.176 Sum_probs=96.3
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccC
Q 014006 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (432)
Q Consensus 211 ~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~ 290 (432)
..+.++||||+|.+.++.+++.|.+. ++....+||. +.+|+..+.+|+.+...|+||||+++||+||+
T Consensus 403 ~~grpvLV~t~si~~se~ls~~L~~~----------gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~ 470 (745)
T TIGR00963 403 AKGQPVLVGTTSVEKSELLSNLLKER----------GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIK 470 (745)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHc----------CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCC
Confidence 45779999999999999999999884 7778889998 77888899999999999999999999999999
Q ss_pred C-------eEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccch
Q 014006 291 G-------VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (432)
Q Consensus 291 ~-------v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~ 349 (432)
. ..+||++++|. |...+.||+||+||. .+|.+..+++.++.
T Consensus 471 l~~V~~~GGl~VI~t~~p~------------------s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 471 LEEVKELGGLYVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred ccchhhcCCcEEEecCCCC------------------cHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 8 55999988765 777999999999999 68999888866543
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=2.3e-28 Score=240.00 Aligned_cols=292 Identities=16% Similarity=0.165 Sum_probs=186.7
Q ss_pred EEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeec------ccCCCCce
Q 014006 24 VVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFE------DRTSERTL 96 (432)
Q Consensus 24 ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~ 96 (432)
++.|||||||| .++..+.... ..+.+++++.|+++|+.|+++++.+.++..+....+.....+ .......+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l--~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~ 78 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL--ALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL 78 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC
Confidence 36799999999 4433332222 346789999999999999999998888766554444221111 11234678
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHH-----HHHHHHHHHhhhcCCcEEEEEecccChHHHHhhccC
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI-----LLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSN 171 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~-----~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~ 171 (432)
|+++|+..+. ..+.++++|||||.|+..+.... ... +..++... .+.++|++|||++.+.+.....+
T Consensus 79 IVVGTrsalf------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~-~a~~ra~~-~~~~vil~SATPsles~~~~~~g 150 (505)
T TIGR00595 79 VVIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARD-VAVYRAKK-FNCPVVLGSATPSLESYHNAKQK 150 (505)
T ss_pred EEECChHHHc------CcccCCCEEEEECCCccccccccCCCCcHHH-HHHHHHHh-cCCCEEEEeCCCCHHHHHHHhcC
Confidence 9999997653 24788999999999964433221 111 22222333 35899999999887766554432
Q ss_pred C-CeeecCC----CCCc-eeEEeCCCCC--cchHHHHHHHHHHHHhcCCCCCEEEEeCCHHH------------------
Q 014006 172 C-PTLNVPG----KLYP-VEILHSKERP--TSYLESALKTAIDIHVREPEGDVLIFMTGQDD------------------ 225 (432)
Q Consensus 172 ~-~~i~~~~----~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~------------------ 225 (432)
. ..+.... ...| ++........ .......++.+.+.. ..++++|||+|++.-
T Consensus 151 ~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l--~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C 228 (505)
T TIGR00595 151 AYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTL--AAGEQSILFLNRRGYSKNLLCRSCGYILCCPNC 228 (505)
T ss_pred CeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHH--HcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCC
Confidence 1 2222221 1122 2222221111 111122333333332 345799999888753
Q ss_pred ------------------------------------------HHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHH-
Q 014006 226 ------------------------------------------IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQ- 262 (432)
Q Consensus 226 ------------------------------------------~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r- 262 (432)
++++.+.|.+. .++..+..+|++++...+
T Consensus 229 ~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~--------fp~~~v~~~d~d~~~~~~~ 300 (505)
T TIGR00595 229 DVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKL--------FPGARIARIDSDTTSRKGA 300 (505)
T ss_pred CCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhh--------CCCCcEEEEecccccCccH
Confidence 46666667665 357789999999987665
Q ss_pred -hccCCCCCCCccEEEEeecCcccccccCCeEEEE--eCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCC
Q 014006 263 -VRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVI--DCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPG 338 (432)
Q Consensus 263 -~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI--~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G 338 (432)
.++++.|++|+.+|||+|+++++|+|+|+|++|+ |.|..- ...++...--....++|++|||||. .+|
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l--------~~pd~ra~E~~~~ll~q~~GRagR~~~~g 372 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGL--------HSPDFRAAERGFQLLTQVAGRAGRAEDPG 372 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccc--------cCcccchHHHHHHHHHHHHhccCCCCCCC
Confidence 8899999999999999999999999999999874 655311 0111111112456899999999997 679
Q ss_pred eEEEe
Q 014006 339 KCYRL 343 (432)
Q Consensus 339 ~~~~l 343 (432)
.++..
T Consensus 373 ~viiq 377 (505)
T TIGR00595 373 QVIIQ 377 (505)
T ss_pred EEEEE
Confidence 88843
No 95
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=1.8e-27 Score=229.70 Aligned_cols=304 Identities=15% Similarity=0.177 Sum_probs=211.3
Q ss_pred CchhhhHHHHHHHHhcCC------EEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHh---C
Q 014006 4 LPILQYEETIVETVEQNP------VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL---G 74 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~------~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~---~ 74 (432)
+.+...|+.++..|..+- +=+++|.-|||||..+...+ ......|..+...+||-.||.|.+..+.+.+ +
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~lam-l~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~ 339 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAM-LAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLG 339 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHH-HHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcC
Confidence 556778888888887532 45889999999993332222 2233557789999999999999999887665 4
Q ss_pred CccCCeeeeeeeec------ccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc
Q 014006 75 VRLGEEVGYAIRFE------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (432)
Q Consensus 75 ~~~~~~~g~~~~~~------~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~ 148 (432)
..++..+|...... ...++..+++|+|...+ ..+..+.++.++|+||=| |. .-..-..+.....
T Consensus 340 i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi----Qd~V~F~~LgLVIiDEQH-RF-----GV~QR~~L~~KG~ 409 (677)
T COG1200 340 IRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI----QDKVEFHNLGLVIIDEQH-RF-----GVHQRLALREKGE 409 (677)
T ss_pred CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh----hcceeecceeEEEEeccc-cc-----cHHHHHHHHHhCC
Confidence 55555555322221 22346789999998433 344478999999999999 42 1221122222222
Q ss_pred CCcEEEEEecccChHHHH-hhccCCCeee---cCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 014006 149 SKLKILITSATLDGEKVS-KFFSNCPTLN---VPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (432)
Q Consensus 149 ~~~~ii~~SAT~~~~~~~-~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~ 224 (432)
..+.++.||||+=+..++ ..|++..+-. .+....|+........... ..++.+..-+ ..+.++.|-||-.+
T Consensus 410 ~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~---~v~e~i~~ei--~~GrQaY~VcPLIe 484 (677)
T COG1200 410 QNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRP---EVYERIREEI--AKGRQAYVVCPLIE 484 (677)
T ss_pred CCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHH---HHHHHHHHHH--HcCCEEEEEecccc
Confidence 147899999999666644 4555544433 3444567777665544333 2333333222 35779999999665
Q ss_pred H--------HHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEE
Q 014006 225 D--------IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVI 296 (432)
Q Consensus 225 ~--------~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI 296 (432)
+ |+.++..|+.. .++.++..+||.|+.+++++++++|++|+.+|||||++.|-|||+||.++.|
T Consensus 485 ESE~l~l~~a~~~~~~L~~~--------~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMV 556 (677)
T COG1200 485 ESEKLELQAAEELYEELKSF--------LPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMV 556 (677)
T ss_pred ccccchhhhHHHHHHHHHHH--------cccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEE
Confidence 4 45556666643 3688899999999999999999999999999999999999999999999977
Q ss_pred eCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccc
Q 014006 297 DCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (432)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~ 348 (432)
-.+ ++ ..-.++..|-.||+||. .++.|+.++.+..
T Consensus 557 Ie~--------AE---------RFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 557 IEN--------AE---------RFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred Eec--------hh---------hhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 422 21 22456889999999999 7899999996544
No 96
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=1.1e-26 Score=225.66 Aligned_cols=287 Identities=17% Similarity=0.186 Sum_probs=195.7
Q ss_pred CCchhhhHHHHHHHHhc----CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCc--
Q 014006 3 NLPILQYEETIVETVEQ----NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR-- 76 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~----~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~-- 76 (432)
...++.+|+++++++.. ++..++++|||+|||.++..++..... .+++++|+++|+.|..+.+.+.++..
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~----~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~ 109 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR----STLVLVPTKELLDQWAEALKKFLLLNDE 109 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC----CEEEEECcHHHHHHHHHHHHHhcCCccc
Confidence 35688999999999988 889999999999999777666665532 39999999999999988887777654
Q ss_pred cCCeeeeeeeecccCCCCceEEEcCHHHHHHH-HhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcE-EE
Q 014006 77 LGEEVGYAIRFEDRTSERTLIKYLTDGVLLRE-ILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK-IL 154 (432)
Q Consensus 77 ~~~~~g~~~~~~~~~~~~~~i~v~T~~~l~~~-l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~-ii 154 (432)
.|..-|. .....+ ..|.|+|...+.+. .+.....+++++||+|||| +.... ....+...+.. .. ++
T Consensus 110 ~g~~~~~----~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~H-h~~a~-~~~~~~~~~~~-----~~~~L 177 (442)
T COG1061 110 IGIYGGG----EKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVH-HLPAP-SYRRILELLSA-----AYPRL 177 (442)
T ss_pred cceecCc----eeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccc-cCCcH-HHHHHHHhhhc-----cccee
Confidence 2322221 111112 57999999988775 2333344479999999999 44433 33333333332 33 89
Q ss_pred EEecccChHH------HHhhccCCCeeecC-------CCCCceeEEeCCCC--C---cch--------------------
Q 014006 155 ITSATLDGEK------VSKFFSNCPTLNVP-------GKLYPVEILHSKER--P---TSY-------------------- 196 (432)
Q Consensus 155 ~~SAT~~~~~------~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~--~---~~~-------------------- 196 (432)
++|||++..+ +..+++ +.+.... +...|......... . ..+
T Consensus 178 GLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (442)
T COG1061 178 GLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAE 256 (442)
T ss_pred eeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHH
Confidence 9999975321 222222 2222221 22222222111110 0 000
Q ss_pred ---------HHHHHHHHHHHHhcC-CCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccC
Q 014006 197 ---------LESALKTAIDIHVRE-PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVF 266 (432)
Q Consensus 197 ---------~~~~~~~~~~~~~~~-~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~ 266 (432)
.......+..+.... .+.+++||+.++.+++.++..+.. ++. +..+.+..+.++|..++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~----------~~~-~~~it~~t~~~eR~~il 325 (442)
T COG1061 257 NEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLA----------PGI-VEAITGETPKEEREAIL 325 (442)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcC----------CCc-eEEEECCCCHHHHHHHH
Confidence 001111222222222 466999999999999999999875 344 78899999999999999
Q ss_pred CCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC
Q 014006 267 SPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT 335 (432)
Q Consensus 267 ~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~ 335 (432)
+.|+.|.+++||++.++..|+|+|+++++|... ..-|...|.||+||.=|.
T Consensus 326 ~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~------------------~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 326 ERFRTGGIKVLVTVKVLDEGVDIPDADVLIILR------------------PTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HHHHcCCCCEEEEeeeccceecCCCCcEEEEeC------------------CCCcHHHHHHHhhhhccC
Confidence 999999999999999999999999999999632 244888999999999995
No 97
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=7.4e-28 Score=203.52 Aligned_cols=277 Identities=17% Similarity=0.168 Sum_probs=190.8
Q ss_pred hhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCCCCC-cEEEecccchhhhHHHHHHHHHHhCC----ccCCe
Q 014006 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKS-GIIGVTQPRRVAAVSVARRVAQELGV----RLGEE 80 (432)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~~~~-~~vl~~~P~~~l~~q~~~~~~~~~~~----~~~~~ 80 (432)
.+.|.+.++..--|-+++++|.+|-||| .++..-+.+..+..| ..+++.+.||+||-|+.+...++... .+...
T Consensus 66 sevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVF 145 (387)
T KOG0329|consen 66 SEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVF 145 (387)
T ss_pred hHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEE
Confidence 3567777776667889999999999999 555555555655444 47889999999999997765444332 23333
Q ss_pred eeee-eeec-ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 81 VGYA-IRFE-DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 81 ~g~~-~~~~-~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
.|+. ...+ .....-++|+++|||+++.+.++.. .+.++.++|+||+|...-..+...+ ...+.+..|...|++.+|
T Consensus 146 fGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRD-vQEifr~tp~~KQvmmfs 224 (387)
T KOG0329|consen 146 FGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRD-VQEIFRMTPHEKQVMMFS 224 (387)
T ss_pred EcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHH-HHHHhhcCcccceeeeee
Confidence 3321 1111 1122468999999999999987766 8999999999999943333444444 677777888889999999
Q ss_pred cccChHH---HHhhccCCCeeecCCC----CCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHH
Q 014006 158 ATLDGEK---VSKFFSNCPTLNVPGK----LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (432)
Q Consensus 158 AT~~~~~---~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~ 230 (432)
||++.+. ..+|+.++-.+.++.. .+....+|......+ ....+.++....+-.+++||+.|.....
T Consensus 225 atlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~e----KNrkl~dLLd~LeFNQVvIFvKsv~Rl~--- 297 (387)
T KOG0329|consen 225 ATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENE----KNRKLNDLLDVLEFNQVVIFVKSVQRLS--- 297 (387)
T ss_pred eecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhh----hhhhhhhhhhhhhhcceeEeeehhhhhh---
Confidence 9998753 6677776555544432 223333333222111 1122233333345579999998765411
Q ss_pred HHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCC
Q 014006 231 SKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSS 310 (432)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~ 310 (432)
| ..+ +|||++++||+||..|+.|+|||+|.
T Consensus 298 --------------------------------------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~-------- 327 (387)
T KOG0329|consen 298 --------------------------------------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPE-------- 327 (387)
T ss_pred --------------------------------------h---hhh-hHHhhhhccccCcccceeeeccCCCC--------
Confidence 1 112 79999999999999999999999876
Q ss_pred CCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 311 GMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 311 ~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
+..+|+||.|||||. ..|.++.+.+.+.-..
T Consensus 328 ----------~~DtYlHrv~rAgrfGtkglaitfvs~e~da~ 359 (387)
T KOG0329|consen 328 ----------DSDTYLHRVARAGRFGTKGLAITFVSDENDAK 359 (387)
T ss_pred ----------CchHHHHHhhhhhccccccceeehhcchhhHH
Confidence 555999999999999 6799999987665444
No 98
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=5.8e-27 Score=231.21 Aligned_cols=326 Identities=15% Similarity=0.169 Sum_probs=217.5
Q ss_pred chhhhHHHHHH--HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHH---hCCccCC
Q 014006 5 PILQYEETIVE--TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQE---LGVRLGE 79 (432)
Q Consensus 5 p~~~~q~~i~~--~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~---~~~~~~~ 79 (432)
.+|.-|.+-+. .++++++++..+||+.|||..+..++..........++.+.|..+.+.+....+..+ +|..+..
T Consensus 223 ~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~ 302 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEE 302 (1008)
T ss_pred HHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcchh
Confidence 35666666543 567999999999999999955554444433344567777888888777766665333 3333322
Q ss_pred eeeeeeeecc-cCCCCceEEEcCHHH---HHHHHhcCCCCCCCcEEEEeCCCcCCCCHHH---HHHHHHHHHh-hhcCCc
Q 014006 80 EVGYAIRFED-RTSERTLIKYLTDGV---LLREILSNPDLSPYSVIILDEAHERSLNTDI---LLGLVKRLVN-LRASKL 151 (432)
Q Consensus 80 ~~g~~~~~~~-~~~~~~~i~v~T~~~---l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~---~~~~l~~~~~-~~~~~~ 151 (432)
..| ++.. .......+.+||.|+ +.+.++....+..++.|||||.|. ..+.+. ++.++.+++- ......
T Consensus 303 y~g---~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhm-i~d~~rg~~lE~~l~k~~y~~~~~~~ 378 (1008)
T KOG0950|consen 303 YAG---RFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHM-IGDKGRGAILELLLAKILYENLETSV 378 (1008)
T ss_pred hcc---cCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeee-eeccccchHHHHHHHHHHHhccccce
Confidence 222 2221 223557899999885 556666667889999999999993 333322 4444444443 333347
Q ss_pred EEEEEecccCh-HHHHhhccCCCeeecCCCCCceeEEeCCCCCcch--HHHHHHHHHH----HH-------------hc-
Q 014006 152 KILITSATLDG-EKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSY--LESALKTAID----IH-------------VR- 210 (432)
Q Consensus 152 ~ii~~SAT~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~-------------~~- 210 (432)
|+|+||||++. ..++.|++ +.+.....++.|...+......... -...+..+.. .. ..
T Consensus 379 ~iIGMSATi~N~~lL~~~L~-A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~ 457 (1008)
T KOG0950|consen 379 QIIGMSATIPNNSLLQDWLD-AFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETA 457 (1008)
T ss_pred eEeeeecccCChHHHHHHhh-hhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhh
Confidence 89999999955 66888885 5555565666665544322111000 0011111110 00 01
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhhcc----------------------CC------CCCCeEEEEecCCCCHHHH
Q 014006 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLD----------------------EG------SCMDAVILPLHGSLPPEMQ 262 (432)
Q Consensus 211 ~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~----------------------~~------~~~~~~~~~~h~~l~~~~r 262 (432)
.++.++|||||+|+.|+.++..+.....+.. .. .....++++||+|++.++|
T Consensus 458 ~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER 537 (1008)
T KOG0950|consen 458 PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEER 537 (1008)
T ss_pred hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchH
Confidence 1234699999999999999987765433100 00 1234568999999999999
Q ss_pred hccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC---CCCe
Q 014006 263 VRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGK 339 (432)
Q Consensus 263 ~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~---~~G~ 339 (432)
+.++..|++|...|++||++++.|++.|..+++|-+-+ ......+..+|.||+|||||. ..|.
T Consensus 538 ~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~--------------~g~~~l~~~~YkQM~GRAGR~gidT~Gd 603 (1008)
T KOG0950|consen 538 EIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY--------------VGREFLTRLEYKQMVGRAGRTGIDTLGD 603 (1008)
T ss_pred HHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc--------------cccchhhhhhHHhhhhhhhhcccccCcc
Confidence 99999999999999999999999999999999986433 234556788999999999999 4699
Q ss_pred EEEecCccch
Q 014006 340 CYRLYPSTVY 349 (432)
Q Consensus 340 ~~~l~~~~~~ 349 (432)
++.++.+.+.
T Consensus 604 siLI~k~~e~ 613 (1008)
T KOG0950|consen 604 SILIIKSSEK 613 (1008)
T ss_pred eEEEeeccch
Confidence 9999977764
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.94 E-value=2.4e-25 Score=234.70 Aligned_cols=307 Identities=19% Similarity=0.247 Sum_probs=190.1
Q ss_pred CchhhhHHHHHHHHh----c-CCEEEEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCcc
Q 014006 4 LPILQYEETIVETVE----Q-NPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRL 77 (432)
Q Consensus 4 lp~~~~q~~i~~~i~----~-~~~~ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~ 77 (432)
+.+..+|.++++.+. + .+..+++++|||||| +.+..+..........++++++|+.+|+.|..+.+... +...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~-~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDT-KIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhc-cccc
Confidence 456789999887664 2 357888999999999 43333322222334569999999999999999887554 2211
Q ss_pred CC----eeeeeeeecccCCCCceEEEcCHHHHHHHHhcC------CCCCCCcEEEEeCCCcCCCCHH-------H-----
Q 014006 78 GE----EVGYAIRFEDRTSERTLIKYLTDGVLLREILSN------PDLSPYSVIILDEAHERSLNTD-------I----- 135 (432)
Q Consensus 78 ~~----~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~------~~l~~~~~vViDE~h~~~~~~~-------~----- 135 (432)
.. ..+.....+........|+|+|...+.+.+... ..+..+++||+|||| |....+ .
T Consensus 491 ~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 491 DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccchh
Confidence 11 111000011122345799999999887765321 256789999999999 764210 0
Q ss_pred --HHHHHHHHHhhhcCCcEEEEEecccChHHHHhhccCCCeeec-------CCCCC----ceeEEe---------CCC--
Q 014006 136 --LLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNV-------PGKLY----PVEILH---------SKE-- 191 (432)
Q Consensus 136 --~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~i~~-------~~~~~----~~~~~~---------~~~-- 191 (432)
.....+.++... +...|+||||+... -..+|+. ++... +|-.. |..... ...
T Consensus 570 ~~~~~~yr~iL~yF--dA~~IGLTATP~r~-t~~~FG~-pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~ 645 (1123)
T PRK11448 570 LDYVSKYRRVLDYF--DAVKIGLTATPALH-TTEIFGE-PVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEE 645 (1123)
T ss_pred hhHHHHHHHHHhhc--CccEEEEecCCccc-hhHHhCC-eeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccch
Confidence 122244455443 25689999998532 2344432 22110 01000 111000 000
Q ss_pred ---------------CCc--chH--------------HHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhc
Q 014006 192 ---------------RPT--SYL--------------ESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (432)
Q Consensus 192 ---------------~~~--~~~--------------~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~ 240 (432)
... .+. ....+.+........++++||||.++++|+.+++.|.+.+...
T Consensus 646 ~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~ 725 (1123)
T PRK11448 646 VEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKK 725 (1123)
T ss_pred hhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 000 000 0111222222223345799999999999999999998764322
Q ss_pred cCCCCCCeEEEEecCCCCHHHHhccCCCCCCCcc-EEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEee
Q 014006 241 DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR-RFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQ 319 (432)
Q Consensus 241 ~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~-~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~ 319 (432)
... .....+..+||+.+ ++.+++++|+++.. +|+|+++++.+|+|+|.|.+||....+
T Consensus 726 ~~~-~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpv------------------ 784 (1123)
T PRK11448 726 YGQ-VEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRV------------------ 784 (1123)
T ss_pred cCC-cCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCC------------------
Confidence 110 12234566888875 56779999999876 799999999999999999999975543
Q ss_pred ecHhhHHHhhcccCCCCC
Q 014006 320 ISKVQANQRVGRAGRTRP 337 (432)
Q Consensus 320 ~s~~~~~qr~GRaGR~~~ 337 (432)
-|...|+||+||+.|..+
T Consensus 785 kS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 785 RSRILYEQMLGRATRLCP 802 (1123)
T ss_pred CCHHHHHHHHhhhccCCc
Confidence 388899999999999865
No 100
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=2.8e-25 Score=226.03 Aligned_cols=296 Identities=20% Similarity=0.220 Sum_probs=216.5
Q ss_pred HHHHHHHH----hcCC--EEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeee
Q 014006 10 EETIVETV----EQNP--VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (432)
Q Consensus 10 q~~i~~~i----~~~~--~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~ 83 (432)
|..+++.+ .+++ +=+|||.-|-|||-.+...+.... ..|+.|.+++||-.||.|.++.|.+.|.- ....++.
T Consensus 599 Ql~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV-~~GKQVAvLVPTTlLA~QHy~tFkeRF~~-fPV~I~~ 676 (1139)
T COG1197 599 QLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV-MDGKQVAVLVPTTLLAQQHYETFKERFAG-FPVRIEV 676 (1139)
T ss_pred HHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh-cCCCeEEEEcccHHhHHHHHHHHHHHhcC-CCeeEEE
Confidence 44444444 3444 668999999999955544444332 45689999999999999999999776642 2223443
Q ss_pred eeeecc----------cCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEE
Q 014006 84 AIRFED----------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (432)
Q Consensus 84 ~~~~~~----------~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~i 153 (432)
-.++.. -..++.+|+|+|. +++..+..+.+++++||||-|.-++.. .+.+|.+ ..++-+
T Consensus 677 LSRF~s~kE~~~il~~la~G~vDIvIGTH----rLL~kdv~FkdLGLlIIDEEqRFGVk~---KEkLK~L----r~~VDv 745 (1139)
T COG1197 677 LSRFRSAKEQKEILKGLAEGKVDIVIGTH----RLLSKDVKFKDLGLLIIDEEQRFGVKH---KEKLKEL----RANVDV 745 (1139)
T ss_pred ecccCCHHHHHHHHHHHhcCCccEEEech----HhhCCCcEEecCCeEEEechhhcCccH---HHHHHHH----hccCcE
Confidence 333322 1246789999998 344556689999999999999222221 1223333 235889
Q ss_pred EEEecccChHHHHhhcc---CCCeeecCC-CCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHH
Q 014006 154 LITSATLDGEKVSKFFS---NCPTLNVPG-KLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (432)
Q Consensus 154 i~~SAT~~~~~~~~~~~---~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~ 229 (432)
+-||||+=+..+..-+. +..++..+. ..+|++.+..+....-.-++....+ ..+|++---.|..++++++
T Consensus 746 LTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl------~RgGQvfYv~NrV~~Ie~~ 819 (1139)
T COG1197 746 LTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILREL------LRGGQVFYVHNRVESIEKK 819 (1139)
T ss_pred EEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHH------hcCCEEEEEecchhhHHHH
Confidence 99999997777665543 345555554 5788888877655443333333333 4578999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCC
Q 014006 230 VSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPS 309 (432)
Q Consensus 230 ~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~ 309 (432)
+..|++. .+...+..-||.|+..+-++++.+|-+|+.+|||||.+.|.|||||+++.+|--+
T Consensus 820 ~~~L~~L--------VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~---------- 881 (1139)
T COG1197 820 AERLREL--------VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIER---------- 881 (1139)
T ss_pred HHHHHHh--------CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEec----------
Confidence 9999987 4788999999999999999999999999999999999999999999998877311
Q ss_pred CCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccch
Q 014006 310 SGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (432)
Q Consensus 310 ~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~ 349 (432)
....-.++..|-.||+||. ..|+||.++++...
T Consensus 882 -------AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~ 915 (1139)
T COG1197 882 -------ADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKA 915 (1139)
T ss_pred -------cccccHHHHHHhccccCCccceEEEEEeecCccc
Confidence 1122457899999999999 78999999976543
No 101
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.93 E-value=3.8e-24 Score=220.91 Aligned_cols=312 Identities=16% Similarity=0.172 Sum_probs=193.0
Q ss_pred CchhhhHHHHHHHHhc--CCEEEEEcCCCCCHHHHHHHHHhhcC-CCCCcEEEecccchhhhHHHHHHHHHHhCCccCCe
Q 014006 4 LPILQYEETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~--~~~~ii~apTGsGKT~~~~~~~~~~~-~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~ 80 (432)
.-+++||-.+...+.. ...+++.-+.|-|||..+..++.... .....++++++|. .|..|...++.+.++......
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~ 229 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLF 229 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEE
Confidence 4577899888776643 23578889999999955555544332 2334589999997 677788788877777543222
Q ss_pred eeeeee---ec-ccCCCCceEEEcCHHHHHHH--HhcCCCCCCCcEEEEeCCCcCCCC----HHHHHHHHHHHHhhhcCC
Q 014006 81 VGYAIR---FE-DRTSERTLIKYLTDGVLLRE--ILSNPDLSPYSVIILDEAHERSLN----TDILLGLVKRLVNLRASK 150 (432)
Q Consensus 81 ~g~~~~---~~-~~~~~~~~i~v~T~~~l~~~--l~~~~~l~~~~~vViDE~h~~~~~----~~~~~~~l~~~~~~~~~~ 150 (432)
.+.... .+ .......+++++|.+.+.+. ......-.++++||+||||. .-. .......++.+... .
T Consensus 230 ~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~-lk~~~~~~s~~y~~v~~La~~---~ 305 (956)
T PRK04914 230 DEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHH-LVWSEEAPSREYQVVEQLAEV---I 305 (956)
T ss_pred cCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhh-hccCCCCcCHHHHHHHHHhhc---c
Confidence 111000 00 01113467899999877641 11111234689999999994 321 11122223333322 2
Q ss_pred cEEEEEecccCh---HH-HH--------------hhc-----------------cCCCee-----------e---c----
Q 014006 151 LKILITSATLDG---EK-VS--------------KFF-----------------SNCPTL-----------N---V---- 177 (432)
Q Consensus 151 ~~ii~~SAT~~~---~~-~~--------------~~~-----------------~~~~~i-----------~---~---- 177 (432)
..++++|||+-. +. ++ .|. .+.+.- . .
T Consensus 306 ~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~ 385 (956)
T PRK04914 306 PGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLL 385 (956)
T ss_pred CCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHH
Confidence 458999999832 11 10 010 000000 0 0
Q ss_pred ---------------------------------CC----CCCceeEEeC-CC-CCcchHH--------------------
Q 014006 178 ---------------------------------PG----KLYPVEILHS-KE-RPTSYLE-------------------- 198 (432)
Q Consensus 178 ---------------------------------~~----~~~~~~~~~~-~~-~~~~~~~-------------------- 198 (432)
.. ..+|...... +. ....|..
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~ 465 (956)
T PRK04914 386 QAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIY 465 (956)
T ss_pred hhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHH
Confidence 00 0000000000 00 0001100
Q ss_pred -------------HHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhcc
Q 014006 199 -------------SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRV 265 (432)
Q Consensus 199 -------------~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~ 265 (432)
..+..+..+.....+.++||||++++.+..+++.|... .++.+..+||+|+..+|.++
T Consensus 466 ~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~---------~Gi~~~~ihG~~s~~eR~~~ 536 (956)
T PRK04914 466 QEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER---------EGIRAAVFHEGMSIIERDRA 536 (956)
T ss_pred HHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc---------cCeeEEEEECCCCHHHHHHH
Confidence 11223344444455679999999999999999999653 58899999999999999999
Q ss_pred CCCCCCC--ccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCe--E
Q 014006 266 FSPPPPN--CRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGK--C 340 (432)
Q Consensus 266 ~~~f~~g--~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~--~ 340 (432)
++.|+++ ..+|||||+++++|+|++.+++||+||+|. +...|.||+||+||. +.|. .
T Consensus 537 ~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~------------------nP~~~eQRIGR~~RiGQ~~~V~i 598 (956)
T PRK04914 537 AAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPF------------------NPDLLEQRIGRLDRIGQKHDIQI 598 (956)
T ss_pred HHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCC------------------CHHHHHHHhcccccCCCCceEEE
Confidence 9999974 599999999999999999999999999865 666999999999999 3343 4
Q ss_pred EEecCcc
Q 014006 341 YRLYPST 347 (432)
Q Consensus 341 ~~l~~~~ 347 (432)
|.++.++
T Consensus 599 ~~~~~~~ 605 (956)
T PRK04914 599 HVPYLEG 605 (956)
T ss_pred EEccCCC
Confidence 4555444
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.93 E-value=1.9e-24 Score=222.07 Aligned_cols=308 Identities=19% Similarity=0.161 Sum_probs=184.9
Q ss_pred hhhhHHHHHHHHhc---CC-EEEEEcCCCCCHHHHHHHHHhhc--C-CCCCcEEEecccchhhhHHHHHHHHHHhCCccC
Q 014006 6 ILQYEETIVETVEQ---NP-VVVVIGETGSGKSTQLSQILHRH--G-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLG 78 (432)
Q Consensus 6 ~~~~q~~i~~~i~~---~~-~~ii~apTGsGKT~~~~~~~~~~--~-~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~ 78 (432)
.++.|+.+++.+.. .. .+++.||||+|||.+...+.... . .....+++++.|++.+..++++++...++....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 45667777776653 34 78899999999994433333222 2 124669999999999999999998766553221
Q ss_pred --C-eeeeeeee----ccc------------CCCCceEEEcCHHHHHHHHhcCCCC-----CCCcEEEEeCCCcCCCCHH
Q 014006 79 --E-EVGYAIRF----EDR------------TSERTLIKYLTDGVLLREILSNPDL-----SPYSVIILDEAHERSLNTD 134 (432)
Q Consensus 79 --~-~~g~~~~~----~~~------------~~~~~~i~v~T~~~l~~~l~~~~~l-----~~~~~vViDE~h~~~~~~~ 134 (432)
. ..|..... ... ...-..+.++|+-............ -..+.+|+||+|. +..+
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~--~~~~ 353 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL--YADE 353 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh--hccc
Confidence 1 12211110 000 0011223334444443321111111 1246899999993 4333
Q ss_pred -HHHHHHHHHHhhhcCCcEEEEEecccChHH---HHhhccCCCeeecCCCCCceeEEe--CCCCCcchHHHH--HHHHHH
Q 014006 135 -ILLGLVKRLVNLRASKLKILITSATLDGEK---VSKFFSNCPTLNVPGKLYPVEILH--SKERPTSYLESA--LKTAID 206 (432)
Q Consensus 135 -~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~ 206 (432)
....++..+......+..+|+||||+|+.. +...+.....+.......+..... ......+..... ......
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 433 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELI 433 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcc
Confidence 333333333333334688999999999743 555554333322221111000000 000001111110 011111
Q ss_pred HHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCC----CCCccEEEEeecC
Q 014006 207 IHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP----PPNCRRFIVSTNI 282 (432)
Q Consensus 207 ~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f----~~g~~~ilvaT~~ 282 (432)
......+++++|-|||++.|.+++..|+.. +..+..+||.+...+|.+.++.+ +.+...|+|||++
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~----------~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQV 503 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEK----------GPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQV 503 (733)
T ss_pred hhhhccCCcEEEEEecHHHHHHHHHHHHhc----------CCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeE
Confidence 122355789999999999999999999985 22799999999999998887643 4567899999999
Q ss_pred cccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC---CCeEEEecCc
Q 014006 283 AETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPS 346 (432)
Q Consensus 283 ~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~---~G~~~~l~~~ 346 (432)
.|.|+|++ .+++| +.+.+..+.+||+||++|.+ +|..|.....
T Consensus 504 IEagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 504 IEAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred EEEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCceeEeecc
Confidence 99999998 66666 34567789999999999995 5666655433
No 103
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.91 E-value=4.2e-24 Score=193.55 Aligned_cols=271 Identities=21% Similarity=0.255 Sum_probs=179.8
Q ss_pred CCcEEEecccchhhhHHHHHHHHHHhCC------ccCCeeeeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC-CCCCC
Q 014006 48 KSGIIGVTQPRRVAAVSVARRVAQELGV------RLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPY 118 (432)
Q Consensus 48 ~~~~vl~~~P~~~l~~q~~~~~~~~~~~------~~~~~~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~ 118 (432)
.....+++.|.++++.|.+..+.++.-. +.-..+|.....+ .+....++|++.||+++.+.+.... .+.+.
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 3457899999999999999866443211 1112334221111 2234678999999999999987765 78899
Q ss_pred cEEEEeCCCcCCCC---HHHHHHHHHHHHhhhc--CCcEEEEEecccChHH---HH-hhccCCCeeecCCC-CCceeEEe
Q 014006 119 SVIILDEAHERSLN---TDILLGLVKRLVNLRA--SKLKILITSATLDGEK---VS-KFFSNCPTLNVPGK-LYPVEILH 188 (432)
Q Consensus 119 ~~vViDE~h~~~~~---~~~~~~~l~~~~~~~~--~~~~ii~~SAT~~~~~---~~-~~~~~~~~i~~~~~-~~~~~~~~ 188 (432)
+++|+||++. .+. .+++..+-..+-.... .+.|.+++|||+..-+ +. +.+.-+..+...+. ..|-..++
T Consensus 365 rFlvlDead~-lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 365 RFLVLDEADL-LLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred EEEEecchhh-hhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 9999999993 333 2333333333322222 2579999999986422 22 12211122222111 01111000
Q ss_pred -------------------------------CC-CCCcchHHHHHHHH-----HHHHhcCCCCCEEEEeCCHHHHHHHHH
Q 014006 189 -------------------------------SK-ERPTSYLESALKTA-----IDIHVREPEGDVLIFMTGQDDIEKLVS 231 (432)
Q Consensus 189 -------------------------------~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~lvF~~t~~~~~~~~~ 231 (432)
.+ ....+....+.+.+ ........-.+++|||.|+.+|..+-+
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 00 00111111121111 111123344699999999999999999
Q ss_pred HHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCC
Q 014006 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (432)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~ 311 (432)
.+.+.-. ..+.++++||+..+.+|++-++.|+.+..+.|||||+++||+||.++.++||--+|.
T Consensus 524 ~~~qkgg-------~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd--------- 587 (725)
T KOG0349|consen 524 MMNQKGG-------KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPD--------- 587 (725)
T ss_pred HHHHcCC-------ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCc---------
Confidence 9988522 468899999999999999999999999999999999999999999999999976665
Q ss_pred CccceEeeecHhhHHHhhcccCCC-CCCeEEEec
Q 014006 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLY 344 (432)
Q Consensus 312 ~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~ 344 (432)
.+.+|+||+||.||+ +-|.++.|+
T Consensus 588 ---------~k~nyvhrigrvgraermglaislv 612 (725)
T KOG0349|consen 588 ---------DKTNYVHRIGRVGRAERMGLAISLV 612 (725)
T ss_pred ---------ccchhhhhhhccchhhhcceeEEEe
Confidence 455999999999999 779999887
No 104
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=6.1e-23 Score=206.67 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=86.5
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccC
Q 014006 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (432)
Q Consensus 211 ~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~ 290 (432)
..+.|+||||+|++.++.+++.|.+ .++....+||.+.+.++..+.++|++|. |+||||+++||+||.
T Consensus 442 ~~g~PVLVgt~Sie~sE~ls~~L~~----------~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~ 509 (896)
T PRK13104 442 VRKQPVLVGTVSIEASEFLSQLLKK----------ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIV 509 (896)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHH----------cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCccee
Confidence 4577999999999999999999988 4888899999999999999999999994 999999999999986
Q ss_pred CeE----E-EEeCCcccc-----------------eeecCCCCCccceE-eeecHhhHHHhhcccCCC-CCCeEEEecC
Q 014006 291 GVV----Y-VIDCGYVKQ-----------------RQYNPSSGMYSLDV-VQISKVQANQRVGRAGRT-RPGKCYRLYP 345 (432)
Q Consensus 291 ~v~----~-VI~~~~~~~-----------------~~~~~~~~~~~~~~-~~~s~~~~~qr~GRaGR~-~~G~~~~l~~ 345 (432)
.. . +.+. +.. ...-...|++...+ .+.|.--=.|-.|||||. .||.+-.+.+
T Consensus 510 -Lggn~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lS 585 (896)
T PRK13104 510 -LGGSLAADLANL--PADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLS 585 (896)
T ss_pred -cCCchhhhhhcc--ccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEE
Confidence 11 0 0000 000 00001123333332 234444446999999999 6888766554
No 105
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=2.6e-22 Score=201.16 Aligned_cols=108 Identities=20% Similarity=0.208 Sum_probs=95.8
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCccccccc-
Q 014006 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV- 289 (432)
Q Consensus 211 ~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi- 289 (432)
..+.++||||+|+..++.++..|.+. ++....+||++...++..+.+++++|. |+||||+++||.||
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~----------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~ 505 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEA----------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIK 505 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHC----------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCC
Confidence 45779999999999999999999884 778889999999888999999888887 99999999999999
Q ss_pred --CCeE-----EEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccc
Q 014006 290 --DGVV-----YVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (432)
Q Consensus 290 --~~v~-----~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~ 348 (432)
++|. +||++.+|. |...+.||+|||||. .||.+..+++-++
T Consensus 506 l~~~V~~~GGLhVI~te~pe------------------s~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 506 LGPGVKELGGLAVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred CCcchhhhCCcEEEeeecCC------------------cHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 4899 999988755 777999999999999 7899988886553
No 106
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.90 E-value=1.7e-22 Score=199.13 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=109.9
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHh-hcCCCCCcEEEecccchhhhHHHHHHHHHHhCCc-c--CCee
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILH-RHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR-L--GEEV 81 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~-~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~-~--~~~~ 81 (432)
=.+-|.+.+..+..++.++|+|||.+|||++-+-.+. .........++++.|+++|++|+...+...+... . |...
T Consensus 512 Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl 591 (1330)
T KOG0949|consen 512 PDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSL 591 (1330)
T ss_pred CcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhh
Confidence 3567899999999999999999999999943332222 2233556799999999999999988876655321 1 1111
Q ss_pred -eeeeeecccCCCCceEEEcCHHHHHHHHhcC----CCCCCCcEEEEeCCCcCCC-CHHHHHHHHHHHHhhhcCCcEEEE
Q 014006 82 -GYAIRFEDRTSERTLIKYLTDGVLLREILSN----PDLSPYSVIILDEAHERSL-NTDILLGLVKRLVNLRASKLKILI 155 (432)
Q Consensus 82 -g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~----~~l~~~~~vViDE~h~~~~-~~~~~~~~l~~~~~~~~~~~~ii~ 155 (432)
|.-....+...-.++|.++-|+.+..++... .+..+++++|+||+|+.+- +.+.+. ..++... .+.+++
T Consensus 592 ~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~---Eqll~li--~CP~L~ 666 (1330)
T KOG0949|consen 592 LGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLW---EQLLLLI--PCPFLV 666 (1330)
T ss_pred HhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHH---HHHHHhc--CCCeeE
Confidence 1111111222347899999999999888764 3889999999999996332 222222 2222222 378999
Q ss_pred Eeccc-ChHHHHhhcc
Q 014006 156 TSATL-DGEKVSKFFS 170 (432)
Q Consensus 156 ~SAT~-~~~~~~~~~~ 170 (432)
+|||+ |++.+..|+.
T Consensus 667 LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 667 LSATIGNPNLFQKWLN 682 (1330)
T ss_pred EecccCCHHHHHHHHH
Confidence 99999 6677888874
No 107
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=2.8e-22 Score=201.76 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=87.2
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccC
Q 014006 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (432)
Q Consensus 211 ~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~ 290 (432)
..+.++||||+|++.++.++..|.+ .++....+||. +.+|+..+.+|+.+...|+||||+++||+||+
T Consensus 428 ~~grpVLIft~Si~~se~Ls~~L~~----------~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~ 495 (830)
T PRK12904 428 KKGQPVLVGTVSIEKSELLSKLLKK----------AGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIK 495 (830)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHH----------CCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCcc
Confidence 4567999999999999999999988 37888889995 77899999999999999999999999999997
Q ss_pred CeE----EEEeCCcc----------------cceeecCCCCCccceE-eeecHhhHHHhhcccCCC-CCCeEEEecCcc
Q 014006 291 GVV----YVIDCGYV----------------KQRQYNPSSGMYSLDV-VQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (432)
Q Consensus 291 ~v~----~VI~~~~~----------------~~~~~~~~~~~~~~~~-~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~ 347 (432)
.. +.....+. .....-...|++...+ .+.|.--=.|-.|||||. .||.+-.+.+=+
T Consensus 496 -LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSle 573 (830)
T PRK12904 496 -LGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLE 573 (830)
T ss_pred -CCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcC
Confidence 22 00000000 0000001123333332 244555556999999999 688876665433
No 108
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=5.1e-20 Score=185.16 Aligned_cols=78 Identities=15% Similarity=0.101 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEE
Q 014006 199 SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIV 278 (432)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilv 278 (432)
+.++.+...+ ..+.++||||+|.+.++.++..|... ++....+|+.++..++..+.+.|++|. |+|
T Consensus 437 Aii~ei~~~~--~~GrpVLV~t~sv~~se~ls~~L~~~----------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtI 502 (908)
T PRK13107 437 AIIKDIKDCR--ERGQPVLVGTVSIEQSELLARLMVKE----------KIPHEVLNAKFHEREAEIVAQAGRTGA--VTI 502 (908)
T ss_pred HHHHHHHHHH--HcCCCEEEEeCcHHHHHHHHHHHHHC----------CCCeEeccCcccHHHHHHHHhCCCCCc--EEE
Confidence 4444444444 44679999999999999999999884 788889999999999999999999998 999
Q ss_pred eecCcccccccC
Q 014006 279 STNIAETSLTVD 290 (432)
Q Consensus 279 aT~~~~~Gidi~ 290 (432)
|||+++||.||.
T Consensus 503 ATnmAGRGTDIk 514 (908)
T PRK13107 503 ATNMAGRGTDIV 514 (908)
T ss_pred ecCCcCCCccee
Confidence 999999999986
No 109
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.85 E-value=1.8e-20 Score=175.18 Aligned_cols=282 Identities=23% Similarity=0.262 Sum_probs=191.8
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEE
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 98 (432)
+.+.+.-+|||.||||+-+.+-+.. .++-++.-|.|.||.+++.++ ...|..+...+|....+.......++.+
T Consensus 190 ~RkIi~H~GPTNSGKTy~ALqrl~~-----aksGvycGPLrLLA~EV~~r~-na~gipCdL~TGeE~~~~~~~~~~a~hv 263 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRALQRLKS-----AKSGVYCGPLRLLAHEVYDRL-NALGIPCDLLTGEERRFVLDNGNPAQHV 263 (700)
T ss_pred hheEEEEeCCCCCchhHHHHHHHhh-----hccceecchHHHHHHHHHHHh-hhcCCCccccccceeeecCCCCCcccce
Confidence 3467788899999999554333332 346688889999999999997 5668899888886666555444445566
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhccCCCeeecC
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNCPTLNVP 178 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~i~~~ 178 (432)
-||-|+.- .-..+++.||||++ .+-|.....++-+.++....+.+.+.+==|-++ .+.+.+ ...
T Consensus 264 ScTVEM~s-------v~~~yeVAViDEIQ-mm~Dp~RGwAWTrALLGl~AdEiHLCGepsvld--lV~~i~------k~T 327 (700)
T KOG0953|consen 264 SCTVEMVS-------VNTPYEVAVIDEIQ-MMRDPSRGWAWTRALLGLAADEIHLCGEPSVLD--LVRKIL------KMT 327 (700)
T ss_pred EEEEEEee-------cCCceEEEEehhHH-hhcCcccchHHHHHHHhhhhhhhhccCCchHHH--HHHHHH------hhc
Confidence 66655432 33568899999999 567777777777777766555444444222222 122221 112
Q ss_pred CCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCC
Q 014006 179 GKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLP 258 (432)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~ 258 (432)
|....+..+ ....+....+ ....-..+-.+|.++|- =|++++..+...+.+. .+..++.++|+||
T Consensus 328 Gd~vev~~Y-eRl~pL~v~~----~~~~sl~nlk~GDCvV~-FSkk~I~~~k~kIE~~---------g~~k~aVIYGsLP 392 (700)
T KOG0953|consen 328 GDDVEVREY-ERLSPLVVEE----TALGSLSNLKPGDCVVA-FSKKDIFTVKKKIEKA---------GNHKCAVIYGSLP 392 (700)
T ss_pred CCeeEEEee-cccCcceehh----hhhhhhccCCCCCeEEE-eehhhHHHHHHHHHHh---------cCcceEEEecCCC
Confidence 222222211 1111111111 22222334557777773 4789999999999986 5666999999999
Q ss_pred HHHHhccCCCCCC--CccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC
Q 014006 259 PEMQVRVFSPPPP--NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR 336 (432)
Q Consensus 259 ~~~r~~~~~~f~~--g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~ 336 (432)
++.|.+--..|.+ +..+|+||||+.+||+|+. |+.||-+.+.| |+ .-...+++.++..|-+|||||.+
T Consensus 393 PeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~K---ys------g~e~~~it~sqikQIAGRAGRf~ 462 (700)
T KOG0953|consen 393 PETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIK---YS------GRETEDITVSQIKQIAGRAGRFG 462 (700)
T ss_pred CchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeeccc---CC------cccceeccHHHHHHHhhcccccc
Confidence 9999887777776 8899999999999999998 99998777655 22 23456789999999999999993
Q ss_pred ----CCeEEEecCcc
Q 014006 337 ----PGKCYRLYPST 347 (432)
Q Consensus 337 ----~G~~~~l~~~~ 347 (432)
.|.+-.|..++
T Consensus 463 s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 463 SKYPQGEVTTLHSED 477 (700)
T ss_pred cCCcCceEEEeeHhh
Confidence 58888777544
No 110
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.83 E-value=2.9e-19 Score=178.57 Aligned_cols=312 Identities=19% Similarity=0.200 Sum_probs=201.2
Q ss_pred CchhhhHHHHHHHHhcC----CEEEEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccC
Q 014006 4 LPILQYEETIVETVEQN----PVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLG 78 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~----~~~ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~ 78 (432)
+.+...|+.+.+.+... ...++.|.|||||| .++..+...+ .+|+.+++++|-.+|..|+..++...|+..++
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L--~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~ 274 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVL--AQGKQVLVLVPEIALTPQLLARFKARFGAKVA 274 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHH--HcCCEEEEEeccccchHHHHHHHHHHhCCChh
Confidence 46677888888888766 67899999999999 6666555544 35789999999999999999999999998887
Q ss_pred Ceeeeeeee------cccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHH-----HHHHHHHHHhhh
Q 014006 79 EEVGYAIRF------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI-----LLGLVKRLVNLR 147 (432)
Q Consensus 79 ~~~g~~~~~------~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~-----~~~~l~~~~~~~ 147 (432)
..++.-... .....+...|+++|-..+. .-+.++++|||||-|..++..+. ..+ +..++...
T Consensus 275 vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd-vA~~Ra~~ 347 (730)
T COG1198 275 VLHSGLSPGERYRVWRRARRGEARVVIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARD-VAVLRAKK 347 (730)
T ss_pred hhcccCChHHHHHHHHHHhcCCceEEEEechhhc------CchhhccEEEEeccccccccCCcCCCcCHHH-HHHHHHHH
Confidence 776532221 1223477899999864332 14788999999999974433222 122 22222222
Q ss_pred cCCcEEEEEecccChHHHHhhccC-CCeeecCCCC-----CceeEEeCCCCCcc----hHHHHHHHHHHHHhcCCCCCEE
Q 014006 148 ASKLKILITSATLDGEKVSKFFSN-CPTLNVPGKL-----YPVEILHSKERPTS----YLESALKTAIDIHVREPEGDVL 217 (432)
Q Consensus 148 ~~~~~ii~~SAT~~~~~~~~~~~~-~~~i~~~~~~-----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l 217 (432)
.+.++|+-|||++-+.+.+...+ ...+....+. ..+........... +-...++.+.... +.+.++|
T Consensus 348 -~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l--~~geQ~l 424 (730)
T COG1198 348 -ENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTL--ERGEQVL 424 (730)
T ss_pred -hCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHH--hcCCeEE
Confidence 35899999999987766555433 2233333321 12222222221111 1123333333322 3456888
Q ss_pred EEeCCHH------------------------------------------------------------HHHHHHHHHHHHH
Q 014006 218 IFMTGQD------------------------------------------------------------DIEKLVSKLEDKI 237 (432)
Q Consensus 218 vF~~t~~------------------------------------------------------------~~~~~~~~L~~~~ 237 (432)
+|+|.|. .++++.+.|.+.
T Consensus 425 lflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~- 503 (730)
T COG1198 425 LFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRL- 503 (730)
T ss_pred EEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHH-
Confidence 8888776 344444444443
Q ss_pred hhccCCCCCCeEEEEecCCCCHHH--HhccCCCCCCCccEEEEeecCcccccccCCeEEEE--eCCcccceeecCCCCCc
Q 014006 238 RSLDEGSCMDAVILPLHGSLPPEM--QVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVI--DCGYVKQRQYNPSSGMY 313 (432)
Q Consensus 238 ~~~~~~~~~~~~~~~~h~~l~~~~--r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI--~~~~~~~~~~~~~~~~~ 313 (432)
.++..++.+-++.+... -+..+..|.+|+.+|||-|.+++.|.|+|+++.|. |.|. .-+..
T Consensus 504 -------FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~--------~L~~~ 568 (730)
T COG1198 504 -------FPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADT--------GLGSP 568 (730)
T ss_pred -------CCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechh--------hhcCC
Confidence 34556666666554322 34567889999999999999999999999999875 4331 11122
Q ss_pred cceEeeecHhhHHHhhcccCCC-CCCeEEEe
Q 014006 314 SLDVVQISKVQANQRVGRAGRT-RPGKCYRL 343 (432)
Q Consensus 314 ~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l 343 (432)
++...--+...+.|-+|||||. .+|.++.-
T Consensus 569 DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQ 599 (730)
T COG1198 569 DFRASERTFQLLMQVAGRAGRAGKPGEVVIQ 599 (730)
T ss_pred CcchHHHHHHHHHHHHhhhccCCCCCeEEEE
Confidence 2333333566788999999999 78887754
No 111
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.82 E-value=4.9e-20 Score=157.15 Aligned_cols=156 Identities=23% Similarity=0.260 Sum_probs=106.1
Q ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCHHHHHH-HHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCC---ccCCeeee
Q 014006 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLS-QILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV---RLGEEVGY 83 (432)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~-~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~---~~~~~~g~ 83 (432)
++|.++++.+.+|+++++.||||+|||+.+. .++.........+++++.|+++++.|+.+++.+.+.. .+....|.
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGG 81 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTT
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccccccc
Confidence 5799999999999999999999999994433 3333232224459999999999999999999777764 12222221
Q ss_pred eeee-c--ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc--CCcEEEEEe
Q 014006 84 AIRF-E--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA--SKLKILITS 157 (432)
Q Consensus 84 ~~~~-~--~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~--~~~~ii~~S 157 (432)
.... + .....+++|+|+||+++.+.+.... .+.++++||+||+|+. .+..+. ..+..+..... .+.|++++|
T Consensus 82 ~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l-~~~~~~-~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 82 QSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHL-SDETFR-AMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp SCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHH-HHTTHH-HHHHHHHHHSHTTTTSEEEEEE
T ss_pred ccccccccccccccccccccCcchhhccccccccccccceeeccCccccc-ccccHH-HHHHHHHHHhcCCCCCcEEEEe
Confidence 1100 0 1112468999999999999887632 5666999999999942 221222 23444444331 248999999
Q ss_pred cccChHHHH
Q 014006 158 ATLDGEKVS 166 (432)
Q Consensus 158 AT~~~~~~~ 166 (432)
||++ ..++
T Consensus 160 AT~~-~~~~ 167 (169)
T PF00270_consen 160 ATLP-SNVE 167 (169)
T ss_dssp SSST-HHHH
T ss_pred eCCC-hhHh
Confidence 9998 5444
No 112
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.82 E-value=1.5e-19 Score=158.88 Aligned_cols=164 Identities=23% Similarity=0.221 Sum_probs=113.5
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCC---CCCcEEEecccchhhhHHHHHHHHHHhC---CccC
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGY---TKSGIIGVTQPRRVAAVSVARRVAQELG---VRLG 78 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~---~~~~~vl~~~P~~~l~~q~~~~~~~~~~---~~~~ 78 (432)
.+.+|.++++.+.+|+++++.+|||+||| .++.+++..... ..+.+++++.|+++|+.|+...+.+... ..+.
T Consensus 22 ~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~ 101 (203)
T cd00268 22 PTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVV 101 (203)
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEE
Confidence 68899999999999999999999999999 434444443332 2466899999999999999888766543 2222
Q ss_pred Ceeeeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEE
Q 014006 79 EEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (432)
Q Consensus 79 ~~~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~ 155 (432)
...|...... .....+.+|+++||+.+.+.+.... .+.+++++|+||+| ...+.++... +..+....+.+.|+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h-~~~~~~~~~~-~~~~~~~l~~~~~~~~ 179 (203)
T cd00268 102 VIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEAD-RMLDMGFEDQ-IREILKLLPKDRQTLL 179 (203)
T ss_pred EEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChH-HhhccChHHH-HHHHHHhCCcccEEEE
Confidence 2222111101 1112468999999999998886554 68899999999999 3444443333 4445555555699999
Q ss_pred EecccChHH---HHhhccC
Q 014006 156 TSATLDGEK---VSKFFSN 171 (432)
Q Consensus 156 ~SAT~~~~~---~~~~~~~ 171 (432)
+|||++... +..++.+
T Consensus 180 ~SAT~~~~~~~~~~~~~~~ 198 (203)
T cd00268 180 FSATMPKEVRDLARKFLRN 198 (203)
T ss_pred EeccCCHHHHHHHHHHCCC
Confidence 999998543 3445443
No 113
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.81 E-value=1.7e-18 Score=176.46 Aligned_cols=288 Identities=13% Similarity=0.053 Sum_probs=160.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhh-cCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeee-cccCCCCceEE
Q 014006 21 PVVVVIGETGSGKSTQLSQILHR-HGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF-EDRTSERTLIK 98 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~-~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~i~ 98 (432)
+..+++.+||||||..+..++.. .......++++++|+.+|..|..+.+.+...... ...+..... .........|+
T Consensus 264 ~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~-~~~~s~~~L~~~l~~~~~~ii 342 (667)
T TIGR00348 264 RGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKDCA-ERIESIAELKRLLEKDDGGII 342 (667)
T ss_pred ceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCCCC-cccCCHHHHHHHHhCCCCCEE
Confidence 57889999999999333223222 2234456999999999999999998866542111 111100000 01122346899
Q ss_pred EcCHHHHHHHHhcC--C-CCCCC-cEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChH---HHHhhcc-
Q 014006 99 YLTDGVLLREILSN--P-DLSPY-SVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGE---KVSKFFS- 170 (432)
Q Consensus 99 v~T~~~l~~~l~~~--~-~l~~~-~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~---~~~~~~~- 170 (432)
++|...+.+.+... . ....- -+||+|||| |.....+.. .+....|+ ...++||||+-.. .-...|+
T Consensus 343 vtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~~~----~l~~~~p~-a~~lGfTaTP~~~~d~~t~~~f~~ 416 (667)
T TIGR00348 343 ITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGELAK----NLKKALKN-ASFFGFTGTPIFKKDRDTSLTFAY 416 (667)
T ss_pred EEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHHHH----HHHhhCCC-CcEEEEeCCCcccccccccccccC
Confidence 99999987643221 1 11111 289999999 766554332 22234444 7899999998321 1111221
Q ss_pred --CCCeeecC-----CCCCceeEEeCCCCC------------------------cch---------------------HH
Q 014006 171 --NCPTLNVP-----GKLYPVEILHSKERP------------------------TSY---------------------LE 198 (432)
Q Consensus 171 --~~~~i~~~-----~~~~~~~~~~~~~~~------------------------~~~---------------------~~ 198 (432)
+..+.... ...+.+...|..... .+. +.
T Consensus 417 ~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 496 (667)
T TIGR00348 417 VFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLE 496 (667)
T ss_pred CCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHH
Confidence 11111100 011111111111000 000 01
Q ss_pred HHHHHHHHHHh---cCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHH---------------
Q 014006 199 SALKTAIDIHV---REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPE--------------- 260 (432)
Q Consensus 199 ~~~~~~~~~~~---~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~--------------- 260 (432)
.....+...+. ....++++|||.++..|..+++.|.+..... .+.....++++-+.+
T Consensus 497 ~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~-----~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~ 571 (667)
T TIGR00348 497 SIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK-----FEASAIVMTGKESDDAEIRDYNKHIRTKFD 571 (667)
T ss_pred HHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc-----cCCeeEEecCCccchhHHHHHHHHhccccc
Confidence 11111111111 1224799999999999999999987753221 012233444432221
Q ss_pred ------HHhccCCCCCC-CccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccC
Q 014006 261 ------MQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG 333 (432)
Q Consensus 261 ------~r~~~~~~f~~-g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaG 333 (432)
....++++|++ +..+|+|.++.+..|+|.|.+.+++-. .|+....++|.+||+-
T Consensus 572 ~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyld-------------------Kplk~h~LlQai~R~n 632 (667)
T TIGR00348 572 KSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLD-------------------KPLKYHGLLQAIARTN 632 (667)
T ss_pred cchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEe-------------------ccccccHHHHHHHHhc
Confidence 12356777865 678999999999999999999887731 1223346889999999
Q ss_pred CC-CCCe
Q 014006 334 RT-RPGK 339 (432)
Q Consensus 334 R~-~~G~ 339 (432)
|. .+|+
T Consensus 633 R~~~~~K 639 (667)
T TIGR00348 633 RIDGKDK 639 (667)
T ss_pred cccCCCC
Confidence 94 4443
No 114
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=4e-18 Score=171.93 Aligned_cols=121 Identities=16% Similarity=0.158 Sum_probs=87.8
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHH---hCCccCCee
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQE---LGVRLGEEV 81 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~---~~~~~~~~~ 81 (432)
+.++|.+++..+..++++++.++||+||| +++.+++..... +..+.++.|+++||.|.++.+... ++.+++..+
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~ 170 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLV 170 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh--cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 88999999999999999999999999999 444444433321 234778899999999998876543 455555555
Q ss_pred eeeeeecccCCCCceEEEcCHHHH-HHHHhcCC-CC-------CCCcEEEEeCCCc
Q 014006 82 GYAIRFEDRTSERTLIKYLTDGVL-LREILSNP-DL-------SPYSVIILDEAHE 128 (432)
Q Consensus 82 g~~~~~~~~~~~~~~i~v~T~~~l-~~~l~~~~-~l-------~~~~~vViDE~h~ 128 (432)
|..........-.++|+|+||+++ .+++.... .+ ..+.++||||||.
T Consensus 171 GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 171 SGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred CCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 532222222223589999999999 88887653 33 3568999999995
No 115
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=1.1e-19 Score=170.25 Aligned_cols=316 Identities=10% Similarity=0.020 Sum_probs=203.2
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHHHH--HHHHHhhcCCCCCcEEEecccchhhhHHHHHHH------HHHhC-Cc
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQ--LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV------AQELG-VR 76 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~--~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~------~~~~~-~~ 76 (432)
-+++|.+++..+.+|++.++.-.|.|||+++ ...+-.. ........++..|++++++...+.+ ...+. ..
T Consensus 287 ~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~ 365 (1034)
T KOG4150|consen 287 GIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQ-TLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAY 365 (1034)
T ss_pred hhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhh-hcCcccceecchhHHHHhhccCCceEEEEEehhhhhcce
Confidence 3678999999999999999999999999932 2222111 1233456778889998887654421 11111 11
Q ss_pred cCCeeeeeeee-cccCCCCceEEEcCHHHHHHHHhcCC-----CCCCCcEEEEeCCCcCCCCHHH-HHHHHHHHHhhh--
Q 014006 77 LGEEVGYAIRF-EDRTSERTLIKYLTDGVLLREILSNP-----DLSPYSVIILDEAHERSLNTDI-LLGLVKRLVNLR-- 147 (432)
Q Consensus 77 ~~~~~g~~~~~-~~~~~~~~~i~v~T~~~l~~~l~~~~-----~l~~~~~vViDE~h~~~~~~~~-~~~~l~~~~~~~-- 147 (432)
+...-|.+... ......+.+++|..|.+.....+.+. .+-...++++||+|...+-.+. ....++++....
T Consensus 366 V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~ 445 (1034)
T KOG4150|consen 366 VEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKG 445 (1034)
T ss_pred eecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHH
Confidence 11111111111 11123567899999988876665433 3445578999999964333332 333344444432
Q ss_pred ---cCCcEEEEEecccCh--HHHHhhcc--CCCeeecCCCCCceeE--EeCCCC-------CcchHHHHHHHHHHHHhcC
Q 014006 148 ---ASKLKILITSATLDG--EKVSKFFS--NCPTLNVPGKLYPVEI--LHSKER-------PTSYLESALKTAIDIHVRE 211 (432)
Q Consensus 148 ---~~~~~ii~~SAT~~~--~~~~~~~~--~~~~i~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~ 211 (432)
..+.|++-.|||+-. ...++.++ ....+..+|.+..-+. .+.+.. ..+++....+.+.+.. .
T Consensus 446 F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i--~ 523 (1034)
T KOG4150|consen 446 FEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMV--Q 523 (1034)
T ss_pred HHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHH--H
Confidence 236899999999944 33555554 3455666765544332 222211 1122223333333333 2
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCC
Q 014006 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG 291 (432)
Q Consensus 212 ~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~ 291 (432)
.+-++|.||++|+-|+.+-...++.+...... .--.+..|.||...++|++++.+.-.|+..-+|||+++|.||||..
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~--LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~ 601 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPH--LVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGH 601 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHH--HHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhcccccc
Confidence 35599999999999998776665543321110 1123456899999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEec
Q 014006 292 VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLY 344 (432)
Q Consensus 292 v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~ 344 (432)
.+.|+++|+|. |.++++|..|||||. .+..++.+.
T Consensus 602 LDAVl~~GFP~------------------S~aNl~QQ~GRAGRRNk~SLavyva 637 (1034)
T KOG4150|consen 602 LDAVLHLGFPG------------------SIANLWQQAGRAGRRNKPSLAVYVA 637 (1034)
T ss_pred ceeEEEccCch------------------hHHHHHHHhccccccCCCceEEEEE
Confidence 99999999876 889999999999999 566655444
No 116
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.79 E-value=1.8e-17 Score=162.96 Aligned_cols=294 Identities=16% Similarity=0.162 Sum_probs=174.6
Q ss_pred hhhhHHHHHH----HHhcCC-EEEEEcCCCCCHHHHHHHHHhhc-CCCCCcEEEecccchhhhHHHHHHHHHHhCCccCC
Q 014006 6 ILQYEETIVE----TVEQNP-VVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (432)
Q Consensus 6 ~~~~q~~i~~----~i~~~~-~~ii~apTGsGKT~~~~~~~~~~-~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~ 79 (432)
...+|..++. ++.+|+ -.++++.||+|||..+.+++..+ .....+++++++.+++|+.|.+..+...+......
T Consensus 166 ~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~ 245 (875)
T COG4096 166 PRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTKM 245 (875)
T ss_pred chHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCccce
Confidence 3456655554 444444 57888999999993333344333 33456799999999999999988776665322111
Q ss_pred eeeeeeeecccCCCCceEEEcCHHHHHHHHhcC-C-----CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEE
Q 014006 80 EVGYAIRFEDRTSERTLIKYLTDGVLLREILSN-P-----DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (432)
Q Consensus 80 ~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~-~-----~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~i 153 (432)
....+......++|.++|...+....... . ....+++||||||| |+....+- .++..... . .
T Consensus 246 ----n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-----~I~dYFdA-~-~ 313 (875)
T COG4096 246 ----NKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-----SILDYFDA-A-T 313 (875)
T ss_pred ----eeeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-----HHHHHHHH-H-H
Confidence 11111222335799999999888777544 1 34558999999999 76655443 33333322 2 3
Q ss_pred EEEecccChHH---HHhhccCCCeeec------------CCCCCceeEEeC----------------------CCCC---
Q 014006 154 LITSATLDGEK---VSKFFSNCPTLNV------------PGKLYPVEILHS----------------------KERP--- 193 (432)
Q Consensus 154 i~~SAT~~~~~---~~~~~~~~~~i~~------------~~~~~~~~~~~~----------------------~~~~--- 193 (432)
++++||+.... --.||.+.|+... +.+.+.+...+. ....
T Consensus 314 ~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~ 393 (875)
T COG4096 314 QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEA 393 (875)
T ss_pred HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccc
Confidence 44499985421 2345533222111 111111111000 0000
Q ss_pred ---------cchHHHHHHHHHHHHhc--CC--CCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHH
Q 014006 194 ---------TSYLESALKTAIDIHVR--EP--EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPE 260 (432)
Q Consensus 194 ---------~~~~~~~~~~~~~~~~~--~~--~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~ 260 (432)
....+.....+...... .. .+++||||.+..+|+.+...+....... .+--+..+.+.-...
T Consensus 394 ~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~-----~~~~a~~IT~d~~~~ 468 (875)
T COG4096 394 RDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEY-----NGRYAMKITGDAEQA 468 (875)
T ss_pred cccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccc-----cCceEEEEeccchhh
Confidence 00112233333333333 11 4699999999999999999999875442 223355555554333
Q ss_pred HHhccCCCC--CCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC
Q 014006 261 MQVRVFSPP--PPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR 336 (432)
Q Consensus 261 ~r~~~~~~f--~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~ 336 (432)
++ .++.| ++.-.+|.++.+++..|||+|.|..+|-.-. --|+.-|+||+||+-|..
T Consensus 469 q~--~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~------------------VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 469 QA--LIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRK------------------VRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred HH--HHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhh------------------hhhHHHHHHHhcCccccC
Confidence 22 23333 3445789999999999999999988885332 238889999999999983
No 117
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.79 E-value=7.9e-19 Score=176.93 Aligned_cols=114 Identities=18% Similarity=0.129 Sum_probs=100.2
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccC
Q 014006 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (432)
Q Consensus 211 ~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~ 290 (432)
..+.++||||+|++.++.+++.|.+. ++.+..+||+++..+|.++++.|++|...|+|||+.+++|+|+|
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~----------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKEL----------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLP 509 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhh----------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeC
Confidence 44679999999999999999999874 78899999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEecCcc
Q 014006 291 GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPST 347 (432)
Q Consensus 291 ~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~ 347 (432)
++++||+++-. ....|.+..+|+||+|||||..+|.++.+++..
T Consensus 510 ~v~lVvi~Dad-------------ifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 510 EVSLVAILDAD-------------KEGFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred CCcEEEEeCcc-------------cccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 99999986621 112244778999999999999999999998754
No 118
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.78 E-value=5.8e-17 Score=151.57 Aligned_cols=167 Identities=19% Similarity=0.126 Sum_probs=122.1
Q ss_pred CcEEEEEecccChHHHHhhccC--CCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHH
Q 014006 150 KLKILITSATLDGEKVSKFFSN--CPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIE 227 (432)
Q Consensus 150 ~~~ii~~SAT~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~ 227 (432)
..|+|..|||+...+++.--++ ..++.-.|-..|. +.. .+...-++..+..+.... ..+.++||-+=|++.|+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLlDP~-iev--Rp~~~QvdDL~~EI~~r~--~~~eRvLVTtLTKkmAE 460 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDPE-IEV--RPTKGQVDDLLSEIRKRV--AKNERVLVTTLTKKMAE 460 (663)
T ss_pred cCCEEEEECCCChHHHHhccCceeEEeecCCCCCCCc-eee--ecCCCcHHHHHHHHHHHH--hcCCeEEEEeehHHHHH
Confidence 3689999999977655543221 1112112222222 111 223334445555544433 33579999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeec
Q 014006 228 KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN 307 (432)
Q Consensus 228 ~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~ 307 (432)
.++++|.+ .++++.++||++..-+|.+++++++.|..+|||.-|.+-.|+|+|.|..|--.|--+.-.
T Consensus 461 dLT~Yl~e----------~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGF-- 528 (663)
T COG0556 461 DLTEYLKE----------LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGF-- 528 (663)
T ss_pred HHHHHHHh----------cCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCcccc--
Confidence 99999998 599999999999999999999999999999999999999999999999987443222111
Q ss_pred CCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEec
Q 014006 308 PSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLY 344 (432)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~ 344 (432)
.-|-.+.+|-+|||.|.-.|+++...
T Consensus 529 -----------LRse~SLIQtIGRAARN~~GkvIlYA 554 (663)
T COG0556 529 -----------LRSERSLIQTIGRAARNVNGKVILYA 554 (663)
T ss_pred -----------ccccchHHHHHHHHhhccCCeEEEEc
Confidence 22566889999999999999998765
No 119
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.75 E-value=9.5e-17 Score=160.45 Aligned_cols=272 Identities=17% Similarity=0.138 Sum_probs=176.7
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeee-
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG- 82 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g- 82 (432)
.+.|+.|.-=..-+..|+...+.||||.||||+...+....+ ..|++++++.||..|+.|.++++.++.....+..+-
T Consensus 81 ~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a-~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~ 159 (1187)
T COG1110 81 FRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA-KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLV 159 (1187)
T ss_pred CCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH-hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceee
Confidence 367888888778899999999999999999987765555443 345899999999999999999986654211111111
Q ss_pred -eeee--e-------cccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCc---CCCCHHHHHHHH---------
Q 014006 83 -YAIR--F-------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHE---RSLNTDILLGLV--------- 140 (432)
Q Consensus 83 -~~~~--~-------~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~---~~~~~~~~~~~l--------- 140 (432)
|... . +...+++.+|+++|...|...+-.-.. -+++++++|.+|. .+-+.|.++.++
T Consensus 160 ~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~ 238 (1187)
T COG1110 160 VYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIES 238 (1187)
T ss_pred eeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHH
Confidence 1111 0 122345789999999877655532212 4689999999996 111111111110
Q ss_pred --------------------HHHHh--------hhcCCcEEEEEecccChHH-----HHhhccCCCeeecCCC---CCce
Q 014006 141 --------------------KRLVN--------LRASKLKILITSATLDGEK-----VSKFFSNCPTLNVPGK---LYPV 184 (432)
Q Consensus 141 --------------------~~~~~--------~~~~~~~ii~~SAT~~~~~-----~~~~~~~~~~i~~~~~---~~~~ 184 (432)
+...+ ...+..++|..|||..+.. +...++ +.+... .-.+
T Consensus 239 a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg----FevG~~~~~LRNI 314 (1187)
T COG1110 239 AYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG----FEVGSGGEGLRNI 314 (1187)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----CccCccchhhhhe
Confidence 01100 0112368999999995532 444443 111111 1112
Q ss_pred eEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCC---HHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHH
Q 014006 185 EILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTG---QDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEM 261 (432)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t---~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~ 261 (432)
...|... +..++..+.+. .-+.-.|||++. ++.+++++..|++ .++++..+|++
T Consensus 315 vD~y~~~---~~~e~~~elvk-----~lG~GgLIfV~~d~G~e~aeel~e~Lr~----------~Gi~a~~~~a~----- 371 (1187)
T COG1110 315 VDIYVES---ESLEKVVELVK-----KLGDGGLIFVPIDYGREKAEELAEYLRS----------HGINAELIHAE----- 371 (1187)
T ss_pred eeeeccC---ccHHHHHHHHH-----HhCCCeEEEEEcHHhHHHHHHHHHHHHh----------cCceEEEeecc-----
Confidence 2222222 33333333222 224478999999 9999999999988 48999999973
Q ss_pred HhccCCCCCCCccEEEEee----cCcccccccC-CeEEEEeCCcccce
Q 014006 262 QVRVFSPPPPNCRRFIVST----NIAETSLTVD-GVVYVIDCGYVKQR 304 (432)
Q Consensus 262 r~~~~~~f~~g~~~ilvaT----~~~~~Gidi~-~v~~VI~~~~~~~~ 304 (432)
..+.++.|..|+++++|.+ .++-||+|+| -++++|-+|.|+..
T Consensus 372 ~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 372 KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 3678999999999999876 4789999999 46999999999654
No 120
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.74 E-value=1.2e-17 Score=169.79 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=100.4
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccC
Q 014006 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (432)
Q Consensus 211 ~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~ 290 (432)
..+.+++|||+|++.++.++..|.+ .++.+..+||+++..+|..+++.|++|...|+|||+++++|+|+|
T Consensus 444 ~~g~~viIf~~t~~~ae~L~~~L~~----------~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp 513 (652)
T PRK05298 444 AKGERVLVTTLTKRMAEDLTDYLKE----------LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIP 513 (652)
T ss_pred hCCCEEEEEeCCHHHHHHHHHHHhh----------cceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcccc
Confidence 3467899999999999999999987 488999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEecCc
Q 014006 291 GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPS 346 (432)
Q Consensus 291 ~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~ 346 (432)
++++||+++.+. ...|.+..+|+||+||+||...|.|+.+++.
T Consensus 514 ~v~lVii~d~ei-------------fG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 514 EVSLVAILDADK-------------EGFLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred CCcEEEEeCCcc-------------cccCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 999999877432 1123477899999999999999999999874
No 121
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.72 E-value=1.4e-15 Score=160.00 Aligned_cols=137 Identities=13% Similarity=0.160 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccE
Q 014006 196 YLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRR 275 (432)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ 275 (432)
+.......+..+.. ..+|++|||++|.+..+.++..|...... .++.+. ..+.. ..|.++++.|++++..
T Consensus 658 ~~~~ia~~i~~l~~-~~~g~~LVlftS~~~l~~v~~~L~~~~~~------~~~~~l--~q~~~-~~r~~ll~~F~~~~~~ 727 (850)
T TIGR01407 658 YAQEIASYIIEITA-ITSPKILVLFTSYEMLHMVYDMLNELPEF------EGYEVL--AQGIN-GSRAKIKKRFNNGEKA 727 (850)
T ss_pred HHHHHHHHHHHHHH-hcCCCEEEEeCCHHHHHHHHHHHhhhccc------cCceEE--ecCCC-ccHHHHHHHHHhCCCe
Confidence 44444455544443 34689999999999999999999753110 133332 23333 4788899999999999
Q ss_pred EEEeecCcccccccCCeE--EEEeCCcccceeecC-------------CCCCccceEeeecHhhHHHhhcccCCCC--CC
Q 014006 276 FIVSTNIAETSLTVDGVV--YVIDCGYVKQRQYNP-------------SSGMYSLDVVQISKVQANQRVGRAGRTR--PG 338 (432)
Q Consensus 276 ilvaT~~~~~Gidi~~v~--~VI~~~~~~~~~~~~-------------~~~~~~~~~~~~s~~~~~qr~GRaGR~~--~G 338 (432)
||++|+.+.+|||+|+.. .||-.++|..+--|| .+.++.+ .-|.....+.|-+||.=|.. .|
T Consensus 728 iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~-~lP~A~~~l~Qa~GRlIRs~~D~G 806 (850)
T TIGR01407 728 ILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDY-VLPMAIIRLRQALGRLIRRENDRG 806 (850)
T ss_pred EEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHh-hHHHHHHHHHHhhccccccCCceE
Confidence 999999999999998764 677788885431111 1111111 11335567889999999984 35
Q ss_pred eEEEe
Q 014006 339 KCYRL 343 (432)
Q Consensus 339 ~~~~l 343 (432)
..+.+
T Consensus 807 ~v~il 811 (850)
T TIGR01407 807 SIVIL 811 (850)
T ss_pred EEEEE
Confidence 54443
No 122
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.71 E-value=9.9e-16 Score=159.52 Aligned_cols=312 Identities=17% Similarity=0.106 Sum_probs=184.1
Q ss_pred chhhhHHHHHHHHh----cCCEEEEEcCCCCCHHHHHHHHHhhcC--CCCCcEEEecccchhhhHHHHHHHHHHhCC-cc
Q 014006 5 PILQYEETIVETVE----QNPVVVVIGETGSGKSTQLSQILHRHG--YTKSGIIGVTQPRRVAAVSVARRVAQELGV-RL 77 (432)
Q Consensus 5 p~~~~q~~i~~~i~----~~~~~ii~apTGsGKT~~~~~~~~~~~--~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~-~~ 77 (432)
.+.+||.+-+..+. .|.+.|+.-..|.|||.++..++.... ....+.++|++|...+ .+..+.+.+++.. .+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL-~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTL-GNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHH-HHHHHHHHHHCCCCce
Confidence 46889999888764 577788888999999955444443221 1223467888887544 5566666665532 12
Q ss_pred CCeeeeeeee-----cccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcE
Q 014006 78 GEEVGYAIRF-----EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (432)
Q Consensus 78 ~~~~g~~~~~-----~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (432)
....|..... ........+|+++|++.+.+....- .-.++++||+|||| +.-+...... ..+..... ..
T Consensus 248 ~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L-~k~~W~~VIvDEAH-rIKN~~Skls---kalr~L~a-~~ 321 (1033)
T PLN03142 248 VKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTAL-KRFSWRYIIIDEAH-RIKNENSLLS---KTMRLFST-NY 321 (1033)
T ss_pred EEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHh-ccCCCCEEEEcCcc-ccCCHHHHHH---HHHHHhhc-Cc
Confidence 1222211000 0011245789999999886543211 22357899999999 5555443222 22222222 34
Q ss_pred EEEEecccChHHH---------------------HhhccCCC-----------------e-eec-C---CCCCceeE---
Q 014006 153 ILITSATLDGEKV---------------------SKFFSNCP-----------------T-LNV-P---GKLYPVEI--- 186 (432)
Q Consensus 153 ii~~SAT~~~~~~---------------------~~~~~~~~-----------------~-i~~-~---~~~~~~~~--- 186 (432)
.+++|+|+-.+.+ ..||.... . +.. . ....|...
T Consensus 322 RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~i 401 (1033)
T PLN03142 322 RLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETI 401 (1033)
T ss_pred EEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEE
Confidence 6889999832211 12221100 0 000 0 00011111
Q ss_pred EeCCCCC--cchHH-----------------HH--------------------------------------HHHHHHHH-
Q 014006 187 LHSKERP--TSYLE-----------------SA--------------------------------------LKTAIDIH- 208 (432)
Q Consensus 187 ~~~~~~~--~~~~~-----------------~~--------------------------------------~~~~~~~~- 208 (432)
.+..-.. ..+.. .. +..+..+.
T Consensus 402 v~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~ 481 (1033)
T PLN03142 402 LKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLP 481 (1033)
T ss_pred EeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHH
Confidence 1100000 00000 00 00000000
Q ss_pred -hcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCC---ccEEEEeecCcc
Q 014006 209 -VREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN---CRRFIVSTNIAE 284 (432)
Q Consensus 209 -~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g---~~~ilvaT~~~~ 284 (432)
....+.++|||+........+.+.|.. .++....+||+++.++|..+++.|.+. ...+|++|.+.+
T Consensus 482 ~Lk~~g~KVLIFSQft~~LdiLed~L~~----------~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGG 551 (1033)
T PLN03142 482 KLKERDSRVLIFSQMTRLLDILEDYLMY----------RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGG 551 (1033)
T ss_pred HHHhcCCeEEeehhHHHHHHHHHHHHHH----------cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccc
Confidence 123456999999988888877777765 477888999999999999999999753 346789999999
Q ss_pred cccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCC---CeEEEecCccchhh
Q 014006 285 TSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRP---GKCYRLYPSTVYHD 351 (432)
Q Consensus 285 ~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~---G~~~~l~~~~~~~~ 351 (432)
.|||+...++||.+|.+ .+.....|++||+.|.+. =.+|+|+++...+.
T Consensus 552 lGINLt~Ad~VIiyD~d------------------WNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEE 603 (1033)
T PLN03142 552 LGINLATADIVILYDSD------------------WNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 603 (1033)
T ss_pred cCCchhhCCEEEEeCCC------------------CChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHH
Confidence 99999999999997642 366688899999999843 45788888776544
No 123
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.67 E-value=2.5e-15 Score=152.48 Aligned_cols=318 Identities=17% Similarity=0.158 Sum_probs=205.6
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCee---eeeeeecccCCCCc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV---GYAIRFEDRTSERT 95 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~ 95 (432)
.++++++.+|+|||||.++..++.. .....+++++.|..+.+..++..+.+.++...|..+ |+....+.+.....
T Consensus 1158 ~nd~v~vga~~gsgkt~~ae~a~l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~ 1235 (1674)
T KOG0951|consen 1158 TNDNVLVGAPNGSGKTACAELALLR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKG 1235 (1674)
T ss_pred ccceEEEecCCCCchhHHHHHHhcC--CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhhc
Confidence 5678999999999999887766554 456679999999999999999888777765554443 22333444555788
Q ss_pred eEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCC-CHHH---HHHHHHHHHhhhcCCcEEEEEeccc-ChHHHHhhcc
Q 014006 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSL-NTDI---LLGLVKRLVNLRASKLKILITSATL-DGEKVSKFFS 170 (432)
Q Consensus 96 ~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~-~~~~---~~~~l~~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~ 170 (432)
+++++||++.-.. . ..++++++|.||+|+.+- .... +-+ .+.+.....++++++++|..+ +...+ -.+.
T Consensus 1236 ~vii~tpe~~d~l-q---~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~-ig~s 1309 (1674)
T KOG0951|consen 1236 QVIISTPEQWDLL-Q---SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL-IGAS 1309 (1674)
T ss_pred ceEEechhHHHHH-h---hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh-cccc
Confidence 9999999987544 2 678899999999995321 1111 122 344444444568999999887 44445 2333
Q ss_pred CCCeeecC--CCCCceeEEeCCCCCcchHH---HHHHHHHHHH--hcCCCCCEEEEeCCHHHHHHHHHHHHHHHh-----
Q 014006 171 NCPTLNVP--GKLYPVEILHSKERPTSYLE---SALKTAIDIH--VREPEGDVLIFMTGQDDIEKLVSKLEDKIR----- 238 (432)
Q Consensus 171 ~~~~i~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~----- 238 (432)
...++.+. .++.|...+........+.. +..+..+... ....+++.+||+|+++.|..++..+-....
T Consensus 1310 ~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~ 1389 (1674)
T KOG0951|consen 1310 SSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPD 1389 (1674)
T ss_pred ccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHH
Confidence 34444443 35667666554443333322 1112111111 123567999999999999998876643221
Q ss_pred -----------hccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeec
Q 014006 239 -----------SLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN 307 (432)
Q Consensus 239 -----------~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~ 307 (432)
.+.+. ....+. |-+++..+...+-.-|..|.+.|+|...- ..|+-...--+||. ....||
T Consensus 1390 ~l~~~~e~~~~~l~e~--l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvm----gt~~yd 1460 (1674)
T KOG0951|consen 1390 YLLSELEECDETLRES--LKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVM----GTQYYD 1460 (1674)
T ss_pred HHHHHHhcchHhhhhc--cccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEe----cceeec
Confidence 11111 222233 88999988888888899999999887766 88888775555543 345677
Q ss_pred CCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEec--CccchhhcCCCCCCC
Q 014006 308 PSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLY--PSTVYHDEFLDVTVP 359 (432)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~--~~~~~~~~~~~~~~~ 359 (432)
.....+ ...+.+...|+.|+|.| .|.|+.+. +++.|...+...+.|
T Consensus 1461 g~e~~~----~~y~i~~ll~m~G~a~~--~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1461 GKEHSY----EDYPIAELLQMVGLASG--AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred cccccc----ccCchhHHHHHhhhhcC--CccEEEEecCchHHHHHHhccCcCc
Confidence 655332 23366789999999988 58888887 334444435444444
No 124
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.65 E-value=5.8e-16 Score=125.90 Aligned_cols=104 Identities=26% Similarity=0.344 Sum_probs=93.3
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCC
Q 014006 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG 291 (432)
Q Consensus 212 ~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~ 291 (432)
.++++||||++++.++.+++.|.+ ....+.++||+++.++|..+++.|.+|..+|+++|+++++|+|+|+
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~ 96 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK----------PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPN 96 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh----------cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhh
Confidence 467999999999999999999987 3677999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC-CCeEEEe
Q 014006 292 VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR-PGKCYRL 343 (432)
Q Consensus 292 v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~-~G~~~~l 343 (432)
+++||.++. +.+...+.|++||+||.+ .|.|+.+
T Consensus 97 ~~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 97 VSVVINYDL------------------PWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CCEEEEeCC------------------CCCHHHheecccccccCCCCceEEeC
Confidence 999998664 347779999999999994 7877653
No 125
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.64 E-value=7.3e-14 Score=142.58 Aligned_cols=97 Identities=19% Similarity=0.104 Sum_probs=72.6
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCC--------------------------
Q 014006 216 VLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPP-------------------------- 269 (432)
Q Consensus 216 ~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f-------------------------- 269 (432)
.||=+++.+.+-.+++.|....... ...+.+.+|||..+...|..+++..
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~----~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~ 834 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEE----KYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSP 834 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhcccc----CCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhccc
Confidence 4788888999999999887653221 2467788999999877776654321
Q ss_pred CCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCC
Q 014006 270 PPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRP 337 (432)
Q Consensus 270 ~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~ 337 (432)
..+...|+|||++.|.|+|++ .+++| ..+.+..+.+||+||.-|.+.
T Consensus 835 ~~~~~~i~v~Tqv~E~g~D~d-fd~~~--------------------~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 835 ALNHLFIVLATPVEEVGRDHD-YDWAI--------------------ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred ccCCCeEEEEeeeEEEEeccc-CCeee--------------------eccCcHHHHHHHhhccccccc
Confidence 125679999999999999998 45544 245678899999999999843
No 126
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=2.6e-15 Score=152.27 Aligned_cols=165 Identities=16% Similarity=0.146 Sum_probs=116.8
Q ss_pred cEEEEEecccChH--HHHhhccCCCeeecCCCCCceeEEeCCCC----CcchHHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 014006 151 LKILITSATLDGE--KVSKFFSNCPTLNVPGKLYPVEILHSKER----PTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (432)
Q Consensus 151 ~~ii~~SAT~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~ 224 (432)
.++-+||.|...+ ++.+.+ +..++.++... |+.....+.. ........++.+...+ ..+.++||||+|++
T Consensus 534 ~kLaGMTGTA~te~~Ef~~iY-~L~Vv~IPTnr-P~~R~D~~d~vy~t~~eK~~Ali~~I~~~~--~~grpVLIft~Sve 609 (1025)
T PRK12900 534 KKLAGMTGTAETEASEFFEIY-KLDVVVIPTNK-PIVRKDMDDLVYKTRREKYNAIVLKVEELQ--KKGQPVLVGTASVE 609 (1025)
T ss_pred hhhcccCCCChhHHHHHHHHh-CCcEEECCCCC-CcceecCCCeEecCHHHHHHHHHHHHHHHh--hCCCCEEEEeCcHH
Confidence 4578888888543 354544 56666666532 2222211111 1112223333332222 45679999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccC---CeEE-----EE
Q 014006 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD---GVVY-----VI 296 (432)
Q Consensus 225 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~---~v~~-----VI 296 (432)
.++.+++.|... ++....+|+ .+.+|+..+-.|+.+...|+||||+++||+||+ +|.. ||
T Consensus 610 ~sE~Ls~~L~~~----------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VI 677 (1025)
T PRK12900 610 VSETLSRMLRAK----------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFIL 677 (1025)
T ss_pred HHHHHHHHHHHc----------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceee
Confidence 999999999884 777788997 577888999999999999999999999999999 5533 36
Q ss_pred eCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccch
Q 014006 297 DCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (432)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~ 349 (432)
++..+ .|...|.||+|||||. .||.+..+++.++.
T Consensus 678 gterh------------------es~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 678 GSERH------------------ESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CCCCC------------------chHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 65543 3667899999999999 78999999877654
No 127
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.62 E-value=1.9e-16 Score=116.10 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=67.8
Q ss_pred CCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhH
Q 014006 246 MDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQA 325 (432)
Q Consensus 246 ~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 325 (432)
.++.+..+||+++.++|..+++.|.++..+|||||+++++|+|+|++++||+++.+. +..+|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~------------------~~~~~ 67 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPW------------------SPEEY 67 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSES------------------SHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCC------------------CHHHH
Confidence 588899999999999999999999999999999999999999999999999988643 88899
Q ss_pred HHhhcccCCC
Q 014006 326 NQRVGRAGRT 335 (432)
Q Consensus 326 ~qr~GRaGR~ 335 (432)
.|++||+||.
T Consensus 68 ~Q~~GR~~R~ 77 (78)
T PF00271_consen 68 IQRIGRAGRI 77 (78)
T ss_dssp HHHHTTSSTT
T ss_pred HHHhhcCCCC
Confidence 9999999996
No 128
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.61 E-value=1.4e-14 Score=126.58 Aligned_cols=157 Identities=26% Similarity=0.240 Sum_probs=106.7
Q ss_pred CchhhhHHHHHHHHhcC-CEEEEEcCCCCCHHH-HHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCee
Q 014006 4 LPILQYEETIVETVEQN-PVVVVIGETGSGKST-QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~-~~~ii~apTGsGKT~-~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~ 81 (432)
.+..++|.++++.+.+. +.+++.+|||||||+ ++..+..........+++++.|++.++.|..+++.+.+........
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVV 86 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEE
Confidence 45688999999999988 999999999999995 4444444443333568999999999999999888776643211111
Q ss_pred eeeeeec-----c-cCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEE
Q 014006 82 GYAIRFE-----D-RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (432)
Q Consensus 82 g~~~~~~-----~-~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii 154 (432)
....... . ......+++++|++.+.+.+.... ...+++++|+||+|. ...... ...+..+....+...+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~-~~~~~~-~~~~~~~~~~~~~~~~~v 164 (201)
T smart00487 87 GLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHR-LLDGGF-GDQLEKLLKLLPKNVQLL 164 (201)
T ss_pred EEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHH-HhcCCc-HHHHHHHHHhCCccceEE
Confidence 1100000 0 112223999999999998886654 677889999999994 222122 223444444444458999
Q ss_pred EEecccCh
Q 014006 155 ITSATLDG 162 (432)
Q Consensus 155 ~~SAT~~~ 162 (432)
++|||++.
T Consensus 165 ~~saT~~~ 172 (201)
T smart00487 165 LLSATPPE 172 (201)
T ss_pred EEecCCch
Confidence 99999954
No 129
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=1e-13 Score=137.09 Aligned_cols=116 Identities=22% Similarity=0.215 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEE
Q 014006 199 SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIV 278 (432)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilv 278 (432)
+.++.+...+ ..+.|+||.+.|.+..+.++..|.+. ++....+++.-...+-..|-++=+. -.|.|
T Consensus 415 Aii~ei~~~~--~~GrPVLVgt~sI~~SE~ls~~L~~~----------gI~h~vLNAk~~~~EA~IIa~AG~~--gaVTI 480 (764)
T PRK12326 415 AIVEHIAEVH--ETGQPVLVGTHDVAESEELAERLRAA----------GVPAVVLNAKNDAEEARIIAEAGKY--GAVTV 480 (764)
T ss_pred HHHHHHHHHH--HcCCCEEEEeCCHHHHHHHHHHHHhC----------CCcceeeccCchHhHHHHHHhcCCC--CcEEE
Confidence 3344444433 45779999999999999999999874 6666667776443333333332222 36899
Q ss_pred eecCcccccccCC---------------eEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEE
Q 014006 279 STNIAETSLTVDG---------------VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYR 342 (432)
Q Consensus 279 aT~~~~~Gidi~~---------------v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~ 342 (432)
||++++||.||.= =-+||-+..+ .|.--=.|-.|||||. .||.+-.
T Consensus 481 ATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerh------------------eSrRID~QLrGRaGRQGDpGss~f 542 (764)
T PRK12326 481 STQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRH------------------RSERLDNQLRGRAGRQGDPGSSVF 542 (764)
T ss_pred EecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCC------------------chHHHHHHHhcccccCCCCCceeE
Confidence 9999999999861 1245544332 3444556999999999 6888776
Q ss_pred ecCc
Q 014006 343 LYPS 346 (432)
Q Consensus 343 l~~~ 346 (432)
+.+=
T Consensus 543 ~lSl 546 (764)
T PRK12326 543 FVSL 546 (764)
T ss_pred EEEc
Confidence 6643
No 130
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.60 E-value=4.6e-13 Score=139.33 Aligned_cols=133 Identities=9% Similarity=0.088 Sum_probs=87.0
Q ss_pred chHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecC-CCCHHHHhccCCCCCCCc
Q 014006 195 SYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHG-SLPPEMQVRVFSPPPPNC 273 (432)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~-~l~~~~r~~~~~~f~~g~ 273 (432)
.|.+...+.+..+. ..+|++||+++|.+..+.++..|... ...+ ...| +.+ |.++.++|+++.
T Consensus 631 ~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~----------~~~~-l~Qg~~~~---~~~l~~~F~~~~ 694 (820)
T PRK07246 631 VYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW----------QVSH-LAQEKNGT---AYNIKKRFDRGE 694 (820)
T ss_pred HHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc----------CCcE-EEeCCCcc---HHHHHHHHHcCC
Confidence 34455555554544 45789999999999999999988652 2223 2323 222 445788898888
Q ss_pred cEEEEeecCcccccccC--CeEEEEeCCcccceeecCC----------CC--CccceEeeecHhhHHHhhcccCCCC--C
Q 014006 274 RRFIVSTNIAETSLTVD--GVVYVIDCGYVKQRQYNPS----------SG--MYSLDVVQISKVQANQRVGRAGRTR--P 337 (432)
Q Consensus 274 ~~ilvaT~~~~~Gidi~--~v~~VI~~~~~~~~~~~~~----------~~--~~~~~~~~~s~~~~~qr~GRaGR~~--~ 337 (432)
..||++|+.+..|||+| +...||-.++|-.+-.||. .| ...-..-|.....+.|-+||.=|.. .
T Consensus 695 ~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~ 774 (820)
T PRK07246 695 QQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQK 774 (820)
T ss_pred CeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCc
Confidence 89999999999999996 4566676787754322210 11 1111122444567889999999984 4
Q ss_pred CeEEEe
Q 014006 338 GKCYRL 343 (432)
Q Consensus 338 G~~~~l 343 (432)
|.++.+
T Consensus 775 Gvv~il 780 (820)
T PRK07246 775 SAVLIL 780 (820)
T ss_pred EEEEEE
Confidence 665544
No 131
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.57 E-value=1.4e-14 Score=134.55 Aligned_cols=300 Identities=16% Similarity=0.161 Sum_probs=182.9
Q ss_pred chhhhHHHHHHHHhcC---CEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCee
Q 014006 5 PILQYEETIVETVEQN---PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~---~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~ 81 (432)
-+.++|+.-+..+-.+ +.-||+.|.|+|||..-... ...-.++++++......+.|....+..+.........
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTA----a~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~ 377 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTA----ACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQIC 377 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeee----eeeecccEEEEecCccCHHHHHHHHHhhcccCccceE
Confidence 4678999999988654 35688899999999221111 1122456778877777788887777666655544444
Q ss_pred eeeeeecccCCCCceEEEcCHHHHHHHHhc---------CCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcE
Q 014006 82 GYAIRFEDRTSERTLIKYLTDGVLLREILS---------NPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (432)
Q Consensus 82 g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~---------~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (432)
.+..........++.|++.|+.++..--.. -..-...+++++||+| .+-...+..++..+....
T Consensus 378 rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVH--vvPA~MFRRVlsiv~aHc----- 450 (776)
T KOG1123|consen 378 RFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVH--VVPAKMFRRVLSIVQAHC----- 450 (776)
T ss_pred EeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhc--cchHHHHHHHHHHHHHHh-----
Confidence 333333333456788999998776422110 0123568899999999 566666666555554433
Q ss_pred EEEEecccChH--HHH--hhccCCCeeec-----CCCCCceeE----EeCCCCCc---ch-----------------HHH
Q 014006 153 ILITSATLDGE--KVS--KFFSNCPTLNV-----PGKLYPVEI----LHSKERPT---SY-----------------LES 199 (432)
Q Consensus 153 ii~~SAT~~~~--~~~--~~~~~~~~i~~-----~~~~~~~~~----~~~~~~~~---~~-----------------~~~ 199 (432)
-++++||+-.+ .+. +|+-++.+.+. ....+-.++ .+.+-... +| ...
T Consensus 451 KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFr 530 (776)
T KOG1123|consen 451 KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFR 530 (776)
T ss_pred hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhH
Confidence 48999998432 222 22222222221 111111111 11111100 00 112
Q ss_pred HHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCC-CccEEEE
Q 014006 200 ALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP-NCRRFIV 278 (432)
Q Consensus 200 ~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~-g~~~ilv 278 (432)
....++..+.. .+.++|||..+.-...+.+-.|.+ -+++|..++.+|.+|++.|+- ..++-|+
T Consensus 531 aCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K---------------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIF 594 (776)
T KOG1123|consen 531 ACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK---------------PFIYGPTSQNERMKILQNFQTNPKVNTIF 594 (776)
T ss_pred HHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC---------------ceEECCCchhHHHHHHHhcccCCccceEE
Confidence 33344444433 456999999877655555554433 248999999999999999985 4578888
Q ss_pred eecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCC-------CeEEEecCccc
Q 014006 279 STNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRP-------GKCYRLYPSTV 348 (432)
Q Consensus 279 aT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~-------G~~~~l~~~~~ 348 (432)
-.-+...+||+|..++.|+.. +..| |.-+=-||.||.-|++. ...|.|++++.
T Consensus 595 lSKVgDtSiDLPEAnvLIQIS--------SH~G---------SRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DT 654 (776)
T KOG1123|consen 595 LSKVGDTSIDLPEANVLIQIS--------SHGG---------SRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDT 654 (776)
T ss_pred EeeccCccccCCcccEEEEEc--------cccc---------chHHHHHHHHHHHHHhhcCccccceeeeeeeecch
Confidence 899999999999999999621 1111 44455699999988832 34677776554
No 132
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.57 E-value=4.2e-14 Score=116.22 Aligned_cols=136 Identities=33% Similarity=0.302 Sum_probs=88.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc-CCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeeccc------CCC
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDR------TSE 93 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~-~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~ 93 (432)
+++++.+|||+|||+.+...+... ......++++++|++.++.+....+...... ...+......... ...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 357899999999995544444433 2235678999999999999999888776642 2222222222211 145
Q ss_pred CceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 94 RTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 94 ~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
..+++++|++.+...+.... .....+++|+||+|. .............. .......+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~-~~~~~~~~~~~~~~-~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHR-LLNQGFGLLGLKIL-LKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHH-HhhcchHHHHHHHH-hhCCccceEEEEeccC
Confidence 78999999998887775443 566789999999993 22222222111122 2233458899999996
No 133
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.55 E-value=5.1e-14 Score=121.58 Aligned_cols=147 Identities=14% Similarity=0.076 Sum_probs=92.8
Q ss_pred CchhhhHHHHHHHHhc-------CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCc
Q 014006 4 LPILQYEETIVETVEQ-------NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR 76 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~-------~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~ 76 (432)
+.++++|++++..+.+ ++..++.+|||||||..+..++..... ++++++|+..++.|....+.......
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 4678999999998873 689999999999999554444443332 88999999999999998884443321
Q ss_pred cCCee--------e--------eeeeecccCCCCceEEEcCHHHHHHHHhcCC------------CCCCCcEEEEeCCCc
Q 014006 77 LGEEV--------G--------YAIRFEDRTSERTLIKYLTDGVLLREILSNP------------DLSPYSVIILDEAHE 128 (432)
Q Consensus 77 ~~~~~--------g--------~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~------------~l~~~~~vViDE~h~ 128 (432)
..... + .............++.+.|...+........ .....++||+||||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH- 156 (184)
T PF04851_consen 78 YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH- 156 (184)
T ss_dssp EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG-
T ss_pred hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh-
Confidence 11100 0 0000011123467899999998887764311 34467899999999
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEEecccC
Q 014006 129 RSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (432)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~ 161 (432)
+.........++. . ....+|+||||+.
T Consensus 157 ~~~~~~~~~~i~~-----~-~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSSYREIIE-----F-KAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHHHHHHHH-----S-SCCEEEEEESS-S
T ss_pred hcCCHHHHHHHHc-----C-CCCeEEEEEeCcc
Confidence 4433332333222 2 3478999999975
No 134
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.54 E-value=6.7e-14 Score=110.86 Aligned_cols=134 Identities=21% Similarity=0.306 Sum_probs=85.2
Q ss_pred hcCCEEEEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeec-ccCCCCc
Q 014006 18 EQNPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFE-DRTSERT 95 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~ 95 (432)
.+|+..++...+|+||| -.+|.++.+. ...+.+++++.|||.++.++++.+.. .. +.+..... .....+.
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~-i~~~~rvLvL~PTRvva~em~~aL~~---~~----~~~~t~~~~~~~~g~~ 73 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREA-IKRRLRVLVLAPTRVVAEEMYEALKG---LP----VRFHTNARMRTHFGSS 73 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHH-HHTT--EEEEESSHHHHHHHHHHTTT---SS----EEEESTTSS----SSS
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHH-HHccCeEEEecccHHHHHHHHHHHhc---CC----cccCceeeeccccCCC
Confidence 46778899999999999 4677666543 34577999999999999999887632 11 22111111 1234667
Q ss_pred eEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHH--HHHHHHHhhhcCCcEEEEEecccChH
Q 014006 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILL--GLVKRLVNLRASKLKILITSATLDGE 163 (432)
Q Consensus 96 ~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~--~~l~~~~~~~~~~~~ii~~SAT~~~~ 163 (432)
.|.++|.+.+...+.......++++||+||+| ..|...+. ..++..... ...++|+||||+|..
T Consensus 74 ~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH--~~Dp~sIA~rg~l~~~~~~--g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 74 IIDVMCHATYGHFLLNPCRLKNYDVIIMDECH--FTDPTSIAARGYLRELAES--GEAKVIFMTATPPGS 139 (148)
T ss_dssp SEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT----SHHHHHHHHHHHHHHHT--TS-EEEEEESS-TT-
T ss_pred cccccccHHHHHHhcCcccccCccEEEEeccc--cCCHHHHhhheeHHHhhhc--cCeeEEEEeCCCCCC
Confidence 88889999888888776688999999999999 45665543 333333222 236899999999864
No 135
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=2e-13 Score=138.20 Aligned_cols=104 Identities=18% Similarity=0.144 Sum_probs=66.6
Q ss_pred EEEEEcCCCCCHHH--HHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHh---CCccCCeeeeeeeecccCCCCce
Q 014006 22 VVVVIGETGSGKST--QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL---GVRLGEEVGYAIRFEDRTSERTL 96 (432)
Q Consensus 22 ~~ii~apTGsGKT~--~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~ 96 (432)
--|....||+|||. .++.++.. ..|..+-++.|+..||.+-+..+...+ |.+++...+.....+.+..=.++
T Consensus 97 G~iaEM~TGEGKTLvA~l~a~l~a---l~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~~d 173 (913)
T PRK13103 97 GKIAEMRTGEGKTLVGTLAVYLNA---LSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYAAD 173 (913)
T ss_pred CccccccCCCCChHHHHHHHHHHH---HcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhcCC
Confidence 34678999999993 33333222 346678888899999999988876655 44444433322222222223489
Q ss_pred EEEcCHHHH-HHHHhcCC-------CCCCCcEEEEeCCCc
Q 014006 97 IKYLTDGVL-LREILSNP-------DLSPYSVIILDEAHE 128 (432)
Q Consensus 97 i~v~T~~~l-~~~l~~~~-------~l~~~~~vViDE~h~ 128 (432)
|+|+|...+ .++|..+- ...++.++||||+|-
T Consensus 174 I~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDs 213 (913)
T PRK13103 174 ITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDS 213 (913)
T ss_pred EEEEcccccccchhhccceechhhhcccccceeEechhhh
Confidence 999998875 22332222 347899999999996
No 136
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=2.3e-12 Score=129.37 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCc-cEEE
Q 014006 199 SALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNC-RRFI 277 (432)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~-~~il 277 (432)
+.++.+...+ ..+.|+||.|.|.+..+.++..|.+. ++..-.+++.-...+-..|- ..|. -.|.
T Consensus 414 Aii~ei~~~~--~~gqPVLVgT~SIe~SE~ls~~L~~~----------gi~h~vLNAk~~e~EA~IIa---~AG~~GaVT 478 (925)
T PRK12903 414 AVVKEVKRVH--KKGQPILIGTAQVEDSETLHELLLEA----------NIPHTVLNAKQNAREAEIIA---KAGQKGAIT 478 (925)
T ss_pred HHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC----------CCCceeecccchhhHHHHHH---hCCCCCeEE
Confidence 3333444333 45679999999999999999999884 55555566653333333332 2343 4799
Q ss_pred EeecCcccccccCCeE--------EEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecC
Q 014006 278 VSTNIAETSLTVDGVV--------YVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYP 345 (432)
Q Consensus 278 vaT~~~~~Gidi~~v~--------~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~ 345 (432)
|||++++||.||.--. +||-+..+. |.--=.|-.|||||. .||.+-.+.+
T Consensus 479 IATNMAGRGTDI~Lg~~V~~~GGLhVIgTerhe------------------SrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 479 IATNMAGRGTDIKLSKEVLELGGLYVLGTDKAE------------------SRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred EecccccCCcCccCchhHHHcCCcEEEecccCc------------------hHHHHHHHhcccccCCCCCcceEEEe
Confidence 9999999999997222 677655433 332334999999999 6887655443
No 137
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.48 E-value=6.8e-12 Score=125.24 Aligned_cols=294 Identities=17% Similarity=0.132 Sum_probs=164.9
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCC-CCce
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTS-ERTL 96 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~ 96 (432)
..+...+|.||.|||||+.+..++......++.+++++.-++.++.+++.++.... .. ..+.|......... ...+
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~-l~--gFv~Y~d~~~~~i~~~~~~ 123 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAG-LS--GFVNYLDSDDYIIDGRPYD 123 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcC-CC--cceeeeccccccccccccC
Confidence 35567899999999999877777776544667899999999999999999885431 11 11222111111111 1234
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCc--CCCCH---HHHHHHHHHHHhhhcCCcEEEEEecccChHH---HHhh
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHE--RSLNT---DILLGLVKRLVNLRASKLKILITSATLDGEK---VSKF 168 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~--~~~~~---~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~---~~~~ 168 (432)
-+++.-++|.+.. ...+.++++|||||+-. ..+.. ......+..+.....+..++|+|-||++... ++..
T Consensus 124 rLivqIdSL~R~~--~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~ 201 (824)
T PF02399_consen 124 RLIVQIDSLHRLD--GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASC 201 (824)
T ss_pred eEEEEehhhhhcc--cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHh
Confidence 4445555665543 33678899999999863 00111 1122222223333333467999999998754 3333
Q ss_pred ccCCCeeecCCC----CC---------------------ceeEEeCCCCC-------------cchHHHHHHHHHHHHhc
Q 014006 169 FSNCPTLNVPGK----LY---------------------PVEILHSKERP-------------TSYLESALKTAIDIHVR 210 (432)
Q Consensus 169 ~~~~~~i~~~~~----~~---------------------~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 210 (432)
-++.++-.+... .+ +-+........ ......-...+..- -
T Consensus 202 Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~--L 279 (824)
T PF02399_consen 202 RPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLAR--L 279 (824)
T ss_pred CCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHH--H
Confidence 222222111100 00 00000000000 00001111112111 1
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccC
Q 014006 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (432)
Q Consensus 211 ~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~ 290 (432)
..++++-||++|...++-+++..... ...+..++|.-+.+ .+. . =++.+|++=|++...|+++.
T Consensus 280 ~~gknIcvfsSt~~~~~~v~~~~~~~----------~~~Vl~l~s~~~~~---dv~-~--W~~~~VviYT~~itvG~Sf~ 343 (824)
T PF02399_consen 280 NAGKNICVFSSTVSFAEIVARFCARF----------TKKVLVLNSTDKLE---DVE-S--WKKYDVVIYTPVITVGLSFE 343 (824)
T ss_pred hCCCcEEEEeChHHHHHHHHHHHHhc----------CCeEEEEcCCCCcc---ccc-c--ccceeEEEEeceEEEEeccc
Confidence 34668889999999999888888763 55677787765544 222 2 24589999999999999997
Q ss_pred CeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCcc
Q 014006 291 GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (432)
Q Consensus 291 ~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~ 347 (432)
...+=-.|++.+...+- -+..+..|++||. |. .....|..+...
T Consensus 344 ~~HF~~~f~yvk~~~~g------------pd~~s~~Q~lgRv-R~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 344 EKHFDSMFAYVKPMSYG------------PDMVSVYQMLGRV-RSLLDNEIYVYIDAS 388 (824)
T ss_pred hhhceEEEEEecCCCCC------------CcHHHHHHHHHHH-HhhccCeEEEEEecc
Confidence 54332222232211111 1344678999999 55 666666665443
No 138
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.45 E-value=8.1e-14 Score=103.12 Aligned_cols=72 Identities=31% Similarity=0.413 Sum_probs=66.3
Q ss_pred CCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhH
Q 014006 246 MDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQA 325 (432)
Q Consensus 246 ~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 325 (432)
.++.+..+||+++.++|..+++.|+++..+|+++|++++.|+|+++++.||.++. +.+..+|
T Consensus 10 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~------------------~~~~~~~ 71 (82)
T smart00490 10 LGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL------------------PWSPASY 71 (82)
T ss_pred CCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC------------------CCCHHHH
Confidence 3778999999999999999999999999999999999999999999999998775 3478899
Q ss_pred HHhhcccCCC
Q 014006 326 NQRVGRAGRT 335 (432)
Q Consensus 326 ~qr~GRaGR~ 335 (432)
.|++||+||.
T Consensus 72 ~Q~~gR~~R~ 81 (82)
T smart00490 72 IQRIGRAGRA 81 (82)
T ss_pred HHhhcccccC
Confidence 9999999996
No 139
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.45 E-value=2.5e-12 Score=129.79 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=70.0
Q ss_pred HHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHH---HHHhCCccCCeeeeeeee
Q 014006 13 IVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEVGYAIRF 87 (432)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~---~~~~~~~~~~~~g~~~~~ 87 (432)
++-.+.=++--+....||.||| +.+|.++..+ .|..|-++.+...||..-++.+ .+++|.++|...+.....
T Consensus 82 lig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL---~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~ 158 (870)
T CHL00122 82 LIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNAL---TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSE 158 (870)
T ss_pred hhhhHhhcCCccccccCCCCchHHHHHHHHHHHh---cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChH
Confidence 4444443455678999999999 3334443322 3566777778889988777665 566677766554422222
Q ss_pred cccCCCCceEEEcCHHHH-----HHHHhcCC---CCCCCcEEEEeCCCc
Q 014006 88 EDRTSERTLIKYLTDGVL-----LREILSNP---DLSPYSVIILDEAHE 128 (432)
Q Consensus 88 ~~~~~~~~~i~v~T~~~l-----~~~l~~~~---~l~~~~~vViDE~h~ 128 (432)
+.+..=.++|+|+|...+ .+.+..+. ....+.+.||||+|-
T Consensus 159 err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDS 207 (870)
T CHL00122 159 ERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDS 207 (870)
T ss_pred HHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchh
Confidence 222233579999998643 33332111 456788999999986
No 140
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.43 E-value=5.2e-11 Score=126.31 Aligned_cols=139 Identities=15% Similarity=0.206 Sum_probs=91.0
Q ss_pred chHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCcc
Q 014006 195 SYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR 274 (432)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~ 274 (432)
.+.....+.+..+. ...+|++|||++|.+..+.+++.|...... .++.+.. . +++...|.++++.|+++.-
T Consensus 735 ~~~~~la~~i~~l~-~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~------~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~ 805 (928)
T PRK08074 735 EYIEEVAAYIAKIA-KATKGRMLVLFTSYEMLKKTYYNLKNEEEL------EGYVLLA-Q-GVSSGSRARLTKQFQQFDK 805 (928)
T ss_pred HHHHHHHHHHHHHH-HhCCCCEEEEECCHHHHHHHHHHHhhcccc------cCceEEe-c-CCCCCCHHHHHHHHHhcCC
Confidence 34444555555543 345689999999999999999999764210 1222222 2 4443557788888998888
Q ss_pred EEEEeecCcccccccCC--eEEEEeCCcccceeec-------------CCCCCccceEeeecHhhHHHhhcccCCCC--C
Q 014006 275 RFIVSTNIAETSLTVDG--VVYVIDCGYVKQRQYN-------------PSSGMYSLDVVQISKVQANQRVGRAGRTR--P 337 (432)
Q Consensus 275 ~ilvaT~~~~~Gidi~~--v~~VI~~~~~~~~~~~-------------~~~~~~~~~~~~~s~~~~~qr~GRaGR~~--~ 337 (432)
.||++|..+..|||+|+ .++||-.++|-.+--| ..+.++.+ .-|.....+.|-+||.=|.. .
T Consensus 806 ~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~-~lP~A~~~lkQg~GRlIRs~~D~ 884 (928)
T PRK08074 806 AILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQEL-SLPQAVLRFKQGFGRLIRTETDR 884 (928)
T ss_pred eEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhh-hhHHHHHHHHhhhhhhcccCCce
Confidence 99999999999999996 4888888887532111 11112221 22445667889999999984 3
Q ss_pred CeEEEe
Q 014006 338 GKCYRL 343 (432)
Q Consensus 338 G~~~~l 343 (432)
|..+.|
T Consensus 885 G~v~il 890 (928)
T PRK08074 885 GTVFVL 890 (928)
T ss_pred EEEEEe
Confidence 554433
No 141
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.42 E-value=5.7e-12 Score=127.26 Aligned_cols=134 Identities=10% Similarity=-0.042 Sum_probs=84.8
Q ss_pred EEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhC-CccCCeeeeeeee------cccCCCCc
Q 014006 24 VVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG-VRLGEEVGYAIRF------EDRTSERT 95 (432)
Q Consensus 24 ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~-~~~~~~~g~~~~~------~~~~~~~~ 95 (432)
+..+-+||||| .++..+.... ..|+.++++.|...++.|+.+++.+.|+ ..+...++.-... .....+..
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l--~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~ 241 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATL--RAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQA 241 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHH--HcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 34444699999 4444443333 3467899999999999999999999887 4444333311111 12224567
Q ss_pred eEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHH-----HHHHHHHHHhhhcCCcEEEEEecccChHHHHh
Q 014006 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI-----LLGLVKRLVNLRASKLKILITSATLDGEKVSK 167 (432)
Q Consensus 96 ~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~-----~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~ 167 (432)
+|+++|-..+. .-+.++++|||||-|...+..+. ..+ +...+... .+..+|+.|||.+.+.+..
T Consensus 242 ~IViGtRSAvF------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRd-vA~~Ra~~-~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 242 RVVVGTRSAVF------APVEDLGLVAIWDDGDDLLAEPRAPYPHARE-VALLRAHQ-HGCALLIGGHARTAEAQAL 310 (665)
T ss_pred cEEEEcceeEE------eccCCCCEEEEEcCCchhhcCCCCCCccHHH-HHHHHHHH-cCCcEEEECCCCCHHHHHH
Confidence 89999864321 14788999999999963333221 122 22222222 3589999999998776543
No 142
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.39 E-value=6.5e-10 Score=111.17 Aligned_cols=134 Identities=14% Similarity=0.108 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCC----
Q 014006 196 YLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP---- 271 (432)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~---- 271 (432)
+.+.....+..+. ...+|.+||.+.|.+..+.++..|... ..+. +...|..+ .+...++.|+.
T Consensus 454 ~~~~~~~~~~~~~-~~~~G~~lvLfTS~~~~~~~~~~l~~~---------l~~~-~l~qg~~~--~~~~l~~~f~~~~~~ 520 (636)
T TIGR03117 454 WLENVSLSTAAIL-RKAQGGTLVLTTAFSHISAIGQLVELG---------IPAE-IVIQSEKN--RLASAEQQFLALYAN 520 (636)
T ss_pred HHHHHHHHHHHHH-HHcCCCEEEEechHHHHHHHHHHHHhh---------cCCC-EEEeCCCc--cHHHHHHHHHHhhcC
Confidence 3333444444443 345679999999999999999999764 2223 33455442 23345555654
Q ss_pred CccEEEEeecCccccccc----------CCeEEEEeCCcccceeecCC--------CCCccceEeeecHhhHHHhhcccC
Q 014006 272 NCRRFIVSTNIAETSLTV----------DGVVYVIDCGYVKQRQYNPS--------SGMYSLDVVQISKVQANQRVGRAG 333 (432)
Q Consensus 272 g~~~ilvaT~~~~~Gidi----------~~v~~VI~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~~qr~GRaG 333 (432)
|...||++|+.+-.|||+ +.++.||-.-+|-.+ -||- .|-......|.....+.|-+||.=
T Consensus 521 ~~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLI 599 (636)
T TIGR03117 521 GIQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLV 599 (636)
T ss_pred CCCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCcee
Confidence 578999999999999999 357888877777443 1221 111111223556667889999999
Q ss_pred CC--C--CCeEEEe
Q 014006 334 RT--R--PGKCYRL 343 (432)
Q Consensus 334 R~--~--~G~~~~l 343 (432)
|. - .|....|
T Consensus 600 R~~~D~~~G~i~il 613 (636)
T TIGR03117 600 RHPDMPQNRRIHML 613 (636)
T ss_pred ecCCCcCceEEEEE
Confidence 98 2 4655544
No 143
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=8.1e-11 Score=118.92 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=68.7
Q ss_pred HHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHH---HHHhCCccCCeeeeeeee
Q 014006 13 IVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEVGYAIRF 87 (432)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~---~~~~~~~~~~~~g~~~~~ 87 (432)
++-.+.=++--|....||-||| +.+|.++.. -.|..+-++.+...||..-++.+ .+++|.++|...+.....
T Consensus 91 liGgl~Lh~G~IAEM~TGEGKTL~atlpaylnA---L~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~ 167 (939)
T PRK12902 91 LIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNA---LTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPE 167 (939)
T ss_pred HHhhhhhcCCceeeecCCCChhHHHHHHHHHHh---hcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChH
Confidence 4443332344467999999999 233444322 23455666667777887666554 566677666544422222
Q ss_pred cccCCCCceEEEcCHHHH-----HHHHhcC---CCCCCCcEEEEeCCCc
Q 014006 88 EDRTSERTLIKYLTDGVL-----LREILSN---PDLSPYSVIILDEAHE 128 (432)
Q Consensus 88 ~~~~~~~~~i~v~T~~~l-----~~~l~~~---~~l~~~~~vViDE~h~ 128 (432)
+.+..=.++|+|+|+..+ .+.+..+ .....+.+.||||+|.
T Consensus 168 err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDS 216 (939)
T PRK12902 168 ERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDS 216 (939)
T ss_pred HHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccc
Confidence 233334689999998866 4444322 2567788999999986
No 144
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.29 E-value=2.1e-10 Score=112.21 Aligned_cols=313 Identities=18% Similarity=0.167 Sum_probs=177.9
Q ss_pred hhhhHHHHHH----HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCC--CCCcEEEecccchhhhHHHHHHHHHHhC-CccC
Q 014006 6 ILQYEETIVE----TVEQNPVVVVIGETGSGKSTQLSQILHRHGY--TKSGIIGVTQPRRVAAVSVARRVAQELG-VRLG 78 (432)
Q Consensus 6 ~~~~q~~i~~----~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~--~~~~~vl~~~P~~~l~~q~~~~~~~~~~-~~~~ 78 (432)
+..||-+=++ ....|-+.|+.-.-|=|||.+...++..... ...+--+|++|...|.+-. +.+.++.. ..+.
T Consensus 168 lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~-~Ef~rf~P~l~~~ 246 (971)
T KOG0385|consen 168 LRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWM-NEFKRFTPSLNVV 246 (971)
T ss_pred cchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHH-HHHHHhCCCcceE
Confidence 4455555333 3456778888889999999554444443322 2234567788987765443 44555543 3333
Q ss_pred Ceeeeeee-----ecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEE
Q 014006 79 EEVGYAIR-----FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (432)
Q Consensus 79 ~~~g~~~~-----~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~i 153 (432)
..+|.... .+.......+|+++|+++.++--. -..--+.+++|||||| |.-+....+. .+++.... ..-
T Consensus 247 ~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~-~lk~~~W~ylvIDEaH-RiKN~~s~L~---~~lr~f~~-~nr 320 (971)
T KOG0385|consen 247 VYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS-FLKKFNWRYLVIDEAH-RIKNEKSKLS---KILREFKT-DNR 320 (971)
T ss_pred EEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH-HHhcCCceEEEechhh-hhcchhhHHH---HHHHHhcc-cce
Confidence 33441100 011123478999999998764421 0022357899999999 8777665543 33333322 346
Q ss_pred EEEecccCh---------------------HHHHhhccCCCeee-----------------------cCCCCCceeE--E
Q 014006 154 LITSATLDG---------------------EKVSKFFSNCPTLN-----------------------VPGKLYPVEI--L 187 (432)
Q Consensus 154 i~~SAT~~~---------------------~~~~~~~~~~~~i~-----------------------~~~~~~~~~~--~ 187 (432)
+++|.|+=. +.+..||....... +.....|-.. .
T Consensus 321 LLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~i 400 (971)
T KOG0385|consen 321 LLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELII 400 (971)
T ss_pred eEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeE
Confidence 788888621 22344553210000 0000001000 0
Q ss_pred eCCCCC--cchH-------------------HH-----------------------------------------HHHHHH
Q 014006 188 HSKERP--TSYL-------------------ES-----------------------------------------ALKTAI 205 (432)
Q Consensus 188 ~~~~~~--~~~~-------------------~~-----------------------------------------~~~~~~ 205 (432)
|..-.. .++. .. .++.++
T Consensus 401 yvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL 480 (971)
T KOG0385|consen 401 YVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLL 480 (971)
T ss_pred eccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHH
Confidence 100000 0000 00 001111
Q ss_pred HHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCc---cEEEEeecC
Q 014006 206 DIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNC---RRFIVSTNI 282 (432)
Q Consensus 206 ~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~---~~ilvaT~~ 282 (432)
.- ....++++|||.. .-.+-+.|...+. ..++...-+-|.++.++|...++.|.... .-.+++|-+
T Consensus 481 ~~-Lk~~GhRVLIFSQ----mt~mLDILeDyc~------~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRA 549 (971)
T KOG0385|consen 481 PK-LKEQGHRVLIFSQ----MTRMLDILEDYCM------LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRA 549 (971)
T ss_pred HH-HHhCCCeEEEeHH----HHHHHHHHHHHHH------hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccc
Confidence 10 1345679999964 3334444544432 14777888999999999999999997654 345799999
Q ss_pred cccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEecCccchhh
Q 014006 283 AETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (432)
Q Consensus 283 ~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~~~~ 351 (432)
.+.|||+-..+.||-||- .++|+ .--+.++|+-|.|-..+=.+|+|+++...+.
T Consensus 550 GGLGINL~aADtVIlyDS----DWNPQ-----------~DLQAmDRaHRIGQ~K~V~V~RLitentVEe 603 (971)
T KOG0385|consen 550 GGLGINLTAADTVILYDS----DWNPQ-----------VDLQAMDRAHRIGQKKPVVVYRLITENTVEE 603 (971)
T ss_pred cccccccccccEEEEecC----CCCch-----------hhhHHHHHHHhhCCcCceEEEEEeccchHHH
Confidence 999999999999995431 12222 2237778888888888999999999887655
No 145
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.23 E-value=7.8e-09 Score=106.51 Aligned_cols=133 Identities=14% Similarity=0.160 Sum_probs=85.8
Q ss_pred chHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCC----
Q 014006 195 SYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPP---- 270 (432)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~---- 270 (432)
.+.....+.+..+.. .++.+|||++|.+..+.++..|... .+..+. .++.. .|.++++.|+
T Consensus 518 ~~~~~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~---------~~~~ll-~Q~~~---~~~~ll~~f~~~~~ 582 (697)
T PRK11747 518 AHTAEMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRD---------LRLMLL-VQGDQ---PRQRLLEKHKKRVD 582 (697)
T ss_pred HHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHh---------cCCcEE-EeCCc---hHHHHHHHHHHHhc
Confidence 455566666666665 4556899999999999999999753 122232 34432 3555664444
Q ss_pred CCccEEEEeecCcccccccCC--eEEEEeCCcccceeecCC-------------CCCccceEeeecHhhHHHhhcccCCC
Q 014006 271 PNCRRFIVSTNIAETSLTVDG--VVYVIDCGYVKQRQYNPS-------------SGMYSLDVVQISKVQANQRVGRAGRT 335 (432)
Q Consensus 271 ~g~~~ilvaT~~~~~Gidi~~--v~~VI~~~~~~~~~~~~~-------------~~~~~~~~~~~s~~~~~qr~GRaGR~ 335 (432)
.|...||++|..+..|||+|+ .++||-.++|-..--||. +.+.. ...|.....+.|-+||.=|.
T Consensus 583 ~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~-~~lP~A~~kl~Qg~GRlIRs 661 (697)
T PRK11747 583 EGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFME-ISVPDASFKLIQAVGRLIRS 661 (697)
T ss_pred cCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHH-HHHHHHHHHHHHHhcccccc
Confidence 567789999999999999986 788998888854211111 11111 11123445678999999998
Q ss_pred C--CCeEEEe
Q 014006 336 R--PGKCYRL 343 (432)
Q Consensus 336 ~--~G~~~~l 343 (432)
. .|..+.+
T Consensus 662 ~~D~G~i~il 671 (697)
T PRK11747 662 EQDRGRVTIL 671 (697)
T ss_pred CCceEEEEEE
Confidence 4 3554443
No 146
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.23 E-value=4.8e-13 Score=132.04 Aligned_cols=406 Identities=9% Similarity=-0.113 Sum_probs=261.3
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCC----CCCcEEEecccchhhhHHHHHHHHHHhCCccCC
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGY----TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~----~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~ 79 (432)
+|+..+.+.+++++.++.+.++...||||||++.+..+...-. ..-+.++...|++..|........-+++..++.
T Consensus 405 gk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvll 484 (1282)
T KOG0921|consen 405 GKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLL 484 (1282)
T ss_pred cchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeeccchhh
Confidence 5788899999999999999999999999999766655554311 122356667777776655544433333333333
Q ss_pred eeeeeeeecccC-CCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q 014006 80 EVGYAIRFEDRT-SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (432)
Q Consensus 80 ~~g~~~~~~~~~-~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SA 158 (432)
..++........ ..+..+..+|.+.++..+..+ +......+.||.|.+.++++++..++..+ +++.++++
T Consensus 485 r~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~-------p~~~~~gr 555 (1282)
T KOG0921|consen 485 RMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI-------PDVTVHGR 555 (1282)
T ss_pred hhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc-------cceeeccc
Confidence 344333333222 234455567777777666553 44567888999999999999988765554 67899999
Q ss_pred ccChHHHHhhccCCCeeecCCCCCceeEE------------------------------------eCCCCCcchHHHHHH
Q 014006 159 TLDGEKVSKFFSNCPTLNVPGKLYPVEIL------------------------------------HSKERPTSYLESALK 202 (432)
Q Consensus 159 T~~~~~~~~~~~~~~~i~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~ 202 (432)
|+|...+-.++-+.+...+++++++.+.. ..........++.+.
T Consensus 556 t~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~ 635 (1282)
T KOG0921|consen 556 TFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLN 635 (1282)
T ss_pred cccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHh
Confidence 99976533332233333333322221110 011123444444333
Q ss_pred HHHH------HHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEE
Q 014006 203 TAID------IHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRF 276 (432)
Q Consensus 203 ~~~~------~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~i 276 (432)
.+.. +..-..+...|+|++.+.........+.+.- ...+....+...|..+...+.+.+.+-...+.+..
T Consensus 636 ~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~----ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniae 711 (1282)
T KOG0921|consen 636 DIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYE----ILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAE 711 (1282)
T ss_pred hhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcc----cccchhhcccHhhhhccCcccccccccccccceee
Confidence 2221 1123456788999999888887777776541 11113445667888888888888888888899999
Q ss_pred EEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEecCccchhhcCCCC
Q 014006 277 IVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDV 356 (432)
Q Consensus 277 lvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~ 356 (432)
.-.|......+....+.+|++++-.+...+....-.......|.+.-.-.||.||++|...+.||.++....... |..+
T Consensus 712 tsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~e-m~r~ 790 (1282)
T KOG0921|consen 712 TSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAE-MFRT 790 (1282)
T ss_pred EeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHh-hhcC
Confidence 999998888888888999999988777766655555555566667767779999999999999999999888888 9999
Q ss_pred CCCccccCCchHHHHHHhhCCCCCCccccc--cCCCCCCHHHHHHHHHHHHHccCCCCCC--CCCHHHHHhhcCC
Q 014006 357 TVPEIQRSSLAGSVLYLKSLDLSDINVLKF--DFLDPPSSESLEDALKQLYLIDAIDENG--SITSIGRTMAGTS 427 (432)
Q Consensus 357 ~~~~i~~~~l~~~~l~l~~~~~~~~~~~~~--~~~~~p~~~~l~~~~~~L~~~g~i~~~~--~~t~lG~~~~~l~ 427 (432)
..+|+.......-++.++.+.... +..+ +...+|+..... +..|...+.+...| ..+..++..+..|
T Consensus 791 plhemalTikll~l~SI~~fl~ka--l~~~p~dav~e~e~~l~~--m~~ld~n~elt~lg~~la~l~iep~~~k~ 861 (1282)
T KOG0921|consen 791 PLHEIALTIKLLRLGSIGEFLGKA--LQPPPYDAVIEAEAVLRE--MGALDANDELTPLGRMLARLPIEPRIGKM 861 (1282)
T ss_pred ccHHHHhhHHHHHhhhHHHHHhhc--cCCCchhhccCchHHHHH--hhhhhccCcccchhhhhhhccCcccccce
Confidence 999998876655555555544433 3333 334444444333 33344444444444 3455555544444
No 147
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.15 E-value=4e-09 Score=109.45 Aligned_cols=137 Identities=11% Similarity=0.057 Sum_probs=83.7
Q ss_pred chHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHH--hhccCCCCCCeEEEEecCCCCHHHHhccCCCCCC-
Q 014006 195 SYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKI--RSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP- 271 (432)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~--~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~- 271 (432)
.+.....+.+..+.. ..+|.+|||+||....+.+++.+.+.. ..+. ....++.=..+. .++..+++.|+.
T Consensus 505 ~~~~~l~~~i~~~~~-~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~----~~k~i~~E~~~~--~~~~~~l~~f~~~ 577 (705)
T TIGR00604 505 SLVRNLGELLVEFSK-IIPDGIVVFFPSYSYLENIVSTWKEMGILENIE----KKKLIFVETKDA--QETSDALERYKQA 577 (705)
T ss_pred HHHHHHHHHHHHHhh-cCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHh----cCCCEEEeCCCc--chHHHHHHHHHHH
Confidence 344555555555543 346899999999999999998876521 0110 011222211221 466777777753
Q ss_pred ---CccEEEEee--cCcccccccCC--eEEEEeCCcccceeecCC--------------CCCccceEeeecHhhHHHhhc
Q 014006 272 ---NCRRFIVST--NIAETSLTVDG--VVYVIDCGYVKQRQYNPS--------------SGMYSLDVVQISKVQANQRVG 330 (432)
Q Consensus 272 ---g~~~ilvaT--~~~~~Gidi~~--v~~VI~~~~~~~~~~~~~--------------~~~~~~~~~~~s~~~~~qr~G 330 (432)
|.-.|++|+ ..++.|||+++ .+.||-.|+|.....++. .+... .......-...|-+|
T Consensus 578 ~~~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~~a~~~v~QaiG 656 (705)
T TIGR00604 578 VSEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQD-FYEFDAMRAVNQAIG 656 (705)
T ss_pred HhcCCceEEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHH-HHHHHHHHHHHHHhC
Confidence 455699999 88999999987 588988999974322211 11100 011123346779999
Q ss_pred ccCCCCCCe
Q 014006 331 RAGRTRPGK 339 (432)
Q Consensus 331 RaGR~~~G~ 339 (432)
|+=|.....
T Consensus 657 R~IR~~~D~ 665 (705)
T TIGR00604 657 RVIRHKDDY 665 (705)
T ss_pred ccccCcCce
Confidence 999995544
No 148
>COG4889 Predicted helicase [General function prediction only]
Probab=99.15 E-value=7.7e-11 Score=116.60 Aligned_cols=312 Identities=17% Similarity=0.160 Sum_probs=168.3
Q ss_pred hhhhHHHHHHHHhcC----CEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCC-e
Q 014006 6 ILQYEETIVETVEQN----PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE-E 80 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~----~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~-~ 80 (432)
..+||+.++++..++ ..-=+....|+|||+-...+..... ..++++++|...|..|..+.+........-. .
T Consensus 162 ~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala---~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~a 238 (1518)
T COG4889 162 PRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALA---AARILFLVPSISLLSQTLREWTAQKELDFRASA 238 (1518)
T ss_pred CChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHh---hhheEeecchHHHHHHHHHHHhhccCccceeEE
Confidence 467888888776542 1112235589999933333444332 2689999999999999999886543322110 1
Q ss_pred eeeeee----e------------------------cccCCCCceEEEcCHHHHHHHHhcC-CCCCCCcEEEEeCCCcCCC
Q 014006 81 VGYAIR----F------------------------EDRTSERTLIKYLTDGVLLREILSN-PDLSPYSVIILDEAHERSL 131 (432)
Q Consensus 81 ~g~~~~----~------------------------~~~~~~~~~i~v~T~~~l~~~l~~~-~~l~~~~~vViDE~h~~~~ 131 (432)
++.... . +.+...+--|+++|+..+...--.. .-+..+++||.|||| |..
T Consensus 239 VcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAH-RTt 317 (1518)
T COG4889 239 VCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAH-RTT 317 (1518)
T ss_pred EecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchh-ccc
Confidence 110000 0 0111234568889998887665333 368899999999999 654
Q ss_pred CHHHHHHHHHHHHhhhc----CCcEEEEEecccCh--HHHHhhccC--CCeeecCC----------------------CC
Q 014006 132 NTDILLGLVKRLVNLRA----SKLKILITSATLDG--EKVSKFFSN--CPTLNVPG----------------------KL 181 (432)
Q Consensus 132 ~~~~~~~~l~~~~~~~~----~~~~ii~~SAT~~~--~~~~~~~~~--~~~i~~~~----------------------~~ 181 (432)
...+.-.--..+.+... +..+.+-|+||+-. +..+.-..+ ..+...+. ..
T Consensus 318 Ga~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTD 397 (1518)
T COG4889 318 GATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTD 397 (1518)
T ss_pred cceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhcc
Confidence 33221111111111110 12456778888621 111111110 00000000 00
Q ss_pred CceeEEeC-------------CCCCcchHHHHHHHHHHHH----hc--------------CCCCCEEEEeCCHHHHHHHH
Q 014006 182 YPVEILHS-------------KERPTSYLESALKTAIDIH----VR--------------EPEGDVLIFMTGQDDIEKLV 230 (432)
Q Consensus 182 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~----~~--------------~~~~~~lvF~~t~~~~~~~~ 230 (432)
|.+-+.-. ..+...........+.-.+ .. .+-.+.+-||.+.+...+++
T Consensus 398 YKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~ 477 (1518)
T COG4889 398 YKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIA 477 (1518)
T ss_pred ceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHH
Confidence 11111100 0011011001111111111 00 01135688998887777777
Q ss_pred HHHHHHHh----hccCCCCCCeEEEEe--cCCCCHHHHhccC---CCCCCCccEEEEeecCcccccccCCeEEEEeCCcc
Q 014006 231 SKLEDKIR----SLDEGSCMDAVILPL--HGSLPPEMQVRVF---SPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYV 301 (432)
Q Consensus 231 ~~L~~~~~----~~~~~~~~~~~~~~~--h~~l~~~~r~~~~---~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~ 301 (432)
..+.+-.. .+... ..++.+.+- .|.|+..+|.... ..|.+++.+||=---+++.|||+|..+-||-+
T Consensus 478 ~sFe~Vve~Y~~Elk~d-~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf--- 553 (1518)
T COG4889 478 ESFETVVEAYDEELKKD-FKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFF--- 553 (1518)
T ss_pred HHHHHHHHHHHHHHHhc-CCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEe---
Confidence 66554321 11111 244555544 4788888885543 35788899999888999999999999999964
Q ss_pred cceeecCCCCCccceEeeecHhhHHHhhcccCCCCCCeE
Q 014006 302 KQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKC 340 (432)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~ 340 (432)
||++ |....+|-+||.-|..+|+-
T Consensus 554 -----~pr~----------smVDIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 554 -----DPRS----------SMVDIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred -----cCch----------hHHHHHHHHHHHHHhCcCCc
Confidence 4443 67788999999999976653
No 149
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.09 E-value=2.5e-08 Score=103.35 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=88.8
Q ss_pred chHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCcc
Q 014006 195 SYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR 274 (432)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~ 274 (432)
.+.......+..+.. ..++++|||++|.+..+.+++.+.... .......+|.-+.+ ..++.|+++.-
T Consensus 462 ~~~~~~~~~i~~~~~-~~~~~~lvlF~Sy~~l~~~~~~~~~~~---------~~~~v~~q~~~~~~---~~l~~f~~~~~ 528 (654)
T COG1199 462 ELLAKLAAYLREILK-ASPGGVLVLFPSYEYLKRVAERLKDER---------STLPVLTQGEDERE---ELLEKFKASGE 528 (654)
T ss_pred HHHHHHHHHHHHHHh-hcCCCEEEEeccHHHHHHHHHHHhhcC---------ccceeeecCCCcHH---HHHHHHHHhcC
Confidence 344455555555543 445699999999999999999998741 11234455555444 55556655443
Q ss_pred -EEEEeecCcccccccCCe--EEEEeCCcccceeec----------CCCC--CccceEeeecHhhHHHhhcccCCCC--C
Q 014006 275 -RFIVSTNIAETSLTVDGV--VYVIDCGYVKQRQYN----------PSSG--MYSLDVVQISKVQANQRVGRAGRTR--P 337 (432)
Q Consensus 275 -~ilvaT~~~~~Gidi~~v--~~VI~~~~~~~~~~~----------~~~~--~~~~~~~~~s~~~~~qr~GRaGR~~--~ 337 (432)
-++|+|..+..|||+++- +.||-.|+|-..--| ...| .......+.......|-+||+=|.. .
T Consensus 529 ~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~ 608 (654)
T COG1199 529 GLILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDR 608 (654)
T ss_pred CeEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCc
Confidence 899999999999999865 778888887653221 1111 1122334456667889999999983 3
Q ss_pred CeEEEe
Q 014006 338 GKCYRL 343 (432)
Q Consensus 338 G~~~~l 343 (432)
|.++.+
T Consensus 609 G~ivll 614 (654)
T COG1199 609 GVIVLL 614 (654)
T ss_pred eEEEEe
Confidence 665544
No 150
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.08 E-value=6.7e-08 Score=97.38 Aligned_cols=108 Identities=16% Similarity=0.163 Sum_probs=76.2
Q ss_pred EEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCc--cEE-EEeecCcccccccCCeE
Q 014006 217 LIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNC--RRF-IVSTNIAETSLTVDGVV 293 (432)
Q Consensus 217 lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~--~~i-lvaT~~~~~Gidi~~v~ 293 (432)
.|++..-.....+...+.+. .+..++.+||.++..+|+.+++.|.+.. .+| +.+|-+.+.||++=+.+
T Consensus 598 ~v~Isny~~tldl~e~~~~~---------~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAs 668 (776)
T KOG0390|consen 598 SVLISNYTQTLDLFEQLCRW---------RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGAS 668 (776)
T ss_pred EEEeccHHHHHHHHHHHHhh---------cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccc
Confidence 34445556666666666554 4889999999999999999999998643 244 67778889999998898
Q ss_pred EEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC---CCCeEEEecCccchhh
Q 014006 294 YVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 294 ~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~---~~G~~~~l~~~~~~~~ 351 (432)
.||.+|- .. ..+.=.|-++||-|. ++=..|+|++....+.
T Consensus 669 Rlil~D~--------dW----------NPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEE 711 (776)
T KOG0390|consen 669 RLILFDP--------DW----------NPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEE 711 (776)
T ss_pred eEEEeCC--------CC----------CchhHHHHHHHhccCCCcceEEEEEeecCCCchH
Confidence 8886542 11 222334666666666 4667788887665544
No 151
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.00 E-value=5.6e-09 Score=107.31 Aligned_cols=117 Identities=22% Similarity=0.271 Sum_probs=87.0
Q ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCC---ccEEEEeecCcccc
Q 014006 210 REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN---CRRFIVSTNIAETS 286 (432)
Q Consensus 210 ~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g---~~~ilvaT~~~~~G 286 (432)
...+++||||-.=+..-.-++++|... ++..--+-|++..+.|+.+++.|... ..-.|+||-+.+.|
T Consensus 696 k~~GHrVLIFSQMVRmLDIL~eYL~~r----------~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLG 765 (1373)
T KOG0384|consen 696 KEGGHRVLIFSQMVRMLDILAEYLSLR----------GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLG 765 (1373)
T ss_pred hcCCceEEEhHHHHHHHHHHHHHHHHc----------CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccc
Confidence 345679999998888777788888763 66666789999999999999999754 35678999999999
Q ss_pred cccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEecCccchhh
Q 014006 287 LTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (432)
Q Consensus 287 idi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~~~~ 351 (432)
||+-..+.||-||- .+||++-+ +.+-|+-|.|-...=.+|+|+|++.++.
T Consensus 766 INLatADTVIIFDS----DWNPQNDL-----------QAqARaHRIGQkk~VnVYRLVTk~TvEe 815 (1373)
T KOG0384|consen 766 INLATADTVIIFDS----DWNPQNDL-----------QAQARAHRIGQKKHVNVYRLVTKNTVEE 815 (1373)
T ss_pred ccccccceEEEeCC----CCCcchHH-----------HHHHHHHhhcccceEEEEEEecCCchHH
Confidence 99998888875441 23333211 3344444445445567999999998877
No 152
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.99 E-value=8.2e-08 Score=94.92 Aligned_cols=116 Identities=22% Similarity=0.343 Sum_probs=90.3
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCcc-E-EEEeecCccccccc
Q 014006 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR-R-FIVSTNIAETSLTV 289 (432)
Q Consensus 212 ~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~-~-ilvaT~~~~~Gidi 289 (432)
.+.++|+|..|+....-+-..|... .++..+-..|..+...|..++++|.++.. . .|++|-+-+.|+|+
T Consensus 545 qg~rvllFsqs~~mLdilE~fL~~~---------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNL 615 (923)
T KOG0387|consen 545 QGDRVLLFSQSRQMLDILESFLRRA---------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNL 615 (923)
T ss_pred CCCEEEEehhHHHHHHHHHHHHHhc---------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEeccccccccc
Confidence 3459999999999888887777752 58888999999999999999999997763 3 47899999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEecCccchhh
Q 014006 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (432)
Q Consensus 290 ~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~~~~ 351 (432)
-..+.||-|| +.+||. +-.+..-|+-|-|-.+.=.+|+|.+....+.
T Consensus 616 TgAnRVIIfD----PdWNPS-----------tD~QAreRawRiGQkkdV~VYRL~t~gTIEE 662 (923)
T KOG0387|consen 616 TGANRVIIFD----PDWNPS-----------TDNQARERAWRIGQKKDVVVYRLMTAGTIEE 662 (923)
T ss_pred ccCceEEEEC----CCCCCc-----------cchHHHHHHHhhcCccceEEEEEecCCcHHH
Confidence 9898888643 222222 2235667888887777788999998776544
No 153
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.96 E-value=6.7e-08 Score=90.63 Aligned_cols=277 Identities=16% Similarity=0.168 Sum_probs=154.7
Q ss_pred hhhHHH-HHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeee
Q 014006 7 LQYEET-IVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAI 85 (432)
Q Consensus 7 ~~~q~~-i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~ 85 (432)
.++|.+ +.-++.+|..+++.-.-|=|||.++..++..... .--+++++|-... -..++.+.++++.-.-..+ ..
T Consensus 200 lPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra--EwplliVcPAsvr-ftWa~al~r~lps~~pi~v--v~ 274 (689)
T KOG1000|consen 200 LPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA--EWPLLIVCPASVR-FTWAKALNRFLPSIHPIFV--VD 274 (689)
T ss_pred CchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh--cCcEEEEecHHHh-HHHHHHHHHhcccccceEE--Ee
Confidence 345555 6667889999999999999999776666554422 2356777775332 3334445555543222111 11
Q ss_pred eecccC---CCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccC-
Q 014006 86 RFEDRT---SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD- 161 (432)
Q Consensus 86 ~~~~~~---~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~- 161 (432)
..++.. -....|.+.+++++..+- .-..-..+++||+||.|. +...--.. .+.+......-.++|++|.|+.
T Consensus 275 ~~~D~~~~~~t~~~v~ivSye~ls~l~-~~l~~~~~~vvI~DEsH~--Lk~sktkr-~Ka~~dllk~akhvILLSGTPav 350 (689)
T KOG1000|consen 275 KSSDPLPDVCTSNTVAIVSYEQLSLLH-DILKKEKYRVVIFDESHM--LKDSKTKR-TKAATDLLKVAKHVILLSGTPAV 350 (689)
T ss_pred cccCCccccccCCeEEEEEHHHHHHHH-HHHhcccceEEEEechhh--hhccchhh-hhhhhhHHHHhhheEEecCCccc
Confidence 111111 123567788888764332 111334589999999993 22221111 3333333333357999999973
Q ss_pred ---hHH-----------------HHhhccCCCeeec----CC-------------------------CCCcee---EEeC
Q 014006 162 ---GEK-----------------VSKFFSNCPTLNV----PG-------------------------KLYPVE---ILHS 189 (432)
Q Consensus 162 ---~~~-----------------~~~~~~~~~~i~~----~~-------------------------~~~~~~---~~~~ 189 (432)
.+. ++.-+.+...+.. .+ ...|.+ +.+.
T Consensus 351 SRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~ 430 (689)
T KOG1000|consen 351 SRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYV 430 (689)
T ss_pred CCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEE
Confidence 221 1111111111100 00 001111 1111
Q ss_pred CC-CCcchH----H---------------------------HHHHHHHHHH------hcCCCCCEEEEeCCHHHHHHHHH
Q 014006 190 KE-RPTSYL----E---------------------------SALKTAIDIH------VREPEGDVLIFMTGQDDIEKLVS 231 (432)
Q Consensus 190 ~~-~~~~~~----~---------------------------~~~~~~~~~~------~~~~~~~~lvF~~t~~~~~~~~~ 231 (432)
.. ...... . ..+..+.+.. ...++.+.+||+.-....+.+..
T Consensus 431 ~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~ 510 (689)
T KOG1000|consen 431 SGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQV 510 (689)
T ss_pred cCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHH
Confidence 00 000000 0 0001111111 12345699999999988888888
Q ss_pred HHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCc-cEE-EEeecCcccccccCCeEEEEeCCccc
Q 014006 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNC-RRF-IVSTNIAETSLTVDGVVYVIDCGYVK 302 (432)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~-~~i-lvaT~~~~~Gidi~~v~~VI~~~~~~ 302 (432)
.+.+. ++...-+.|..++.+|...-+.|.... .+| +++-.+++.|+|+...+.||-..++.
T Consensus 511 ~~~~r----------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~w 573 (689)
T KOG1000|consen 511 EVNKR----------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHW 573 (689)
T ss_pred HHHHc----------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecC
Confidence 88774 777888899999999999999988543 444 67888999999999999999766544
No 154
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.88 E-value=5.7e-10 Score=112.79 Aligned_cols=232 Identities=16% Similarity=0.131 Sum_probs=141.4
Q ss_pred CCchhhhHHHHHHHHhcC----------------CEEEEEcCCCCCHHHHHHHH-HhhcCCCCCcEEEecccchhhhHHH
Q 014006 3 NLPILQYEETIVETVEQN----------------PVVVVIGETGSGKSTQLSQI-LHRHGYTKSGIIGVTQPRRVAAVSV 65 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~----------------~~~ii~apTGsGKT~~~~~~-~~~~~~~~~~~vl~~~P~~~l~~q~ 65 (432)
.+|....+...++.+.+. .+.++-+|||+|||..+... .......++.+++++.|.++++.+-
T Consensus 910 plp~~~L~~~~~e~~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker 989 (1230)
T KOG0952|consen 910 PLPSSALKNVVFEALYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKER 989 (1230)
T ss_pred CCcchhhccccHHHhhcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhccc
Confidence 455555555555555432 34677899999999443333 3333445678999999999999888
Q ss_pred HHHHHHHhCCccCCeeee---eeeecccCCCCceEEEcCHHHHHHHHh---cCCCCCCCcEEEEeCCCcCCCCHHHHHHH
Q 014006 66 ARRVAQELGVRLGEEVGY---AIRFEDRTSERTLIKYLTDGVLLREIL---SNPDLSPYSVIILDEAHERSLNTDILLGL 139 (432)
Q Consensus 66 ~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~i~v~T~~~l~~~l~---~~~~l~~~~~vViDE~h~~~~~~~~~~~~ 139 (432)
.+.+.+..... |..+.. .+..+-.....+++++.||+......+ ....+.+++.+|+||.|+..-+.+-.+.+
T Consensus 990 ~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ 1068 (1230)
T KOG0952|consen 990 SDDWSKRDELP-GIKVIELTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEV 1068 (1230)
T ss_pred ccchhhhcccC-CceeEeccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEE
Confidence 88776655433 333321 112222333568999999997665543 34488999999999999754443333322
Q ss_pred HHHH----HhhhcCCcEEEEEe-cccChHHHHhhccCCCeeec--CCCCCceeEEeCCCCCcchHH---HHHHHHHHHHh
Q 014006 140 VKRL----VNLRASKLKILITS-ATLDGEKVSKFFSNCPTLNV--PGKLYPVEILHSKERPTSYLE---SALKTAIDIHV 209 (432)
Q Consensus 140 l~~~----~~~~~~~~~ii~~S-AT~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 209 (432)
+..- ....++.++.+++| |-.+...+++|++-.+.... ..++.|.+.++...+...+.. ...+..++..+
T Consensus 1069 ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik 1148 (1230)
T KOG0952|consen 1069 IVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIK 1148 (1230)
T ss_pred EeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHh
Confidence 2111 11223346777766 44477889999986655333 446677777666555433322 22222333333
Q ss_pred c-CCCCCEEEEeCCHHHHHHHHHHHHH
Q 014006 210 R-EPEGDVLIFMTGQDDIEKLVSKLED 235 (432)
Q Consensus 210 ~-~~~~~~lvF~~t~~~~~~~~~~L~~ 235 (432)
. .+..++|||+.+++.....+..|-.
T Consensus 1149 ~~sp~~p~lifv~srrqtrlta~~li~ 1175 (1230)
T KOG0952|consen 1149 THSPIKPVLIFVSSRRQTRLTALDLIA 1175 (1230)
T ss_pred cCCCCCceEEEeecccccccchHhHHh
Confidence 3 4556999999998877666555543
No 155
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.68 E-value=8.1e-07 Score=94.35 Aligned_cols=133 Identities=17% Similarity=0.068 Sum_probs=81.9
Q ss_pred CCEEEEEcCCCCCHH-HHH--HHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCC-eeee-eeeecccCCCC
Q 014006 20 NPVVVVIGETGSGKS-TQL--SQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE-EVGY-AIRFEDRTSER 94 (432)
Q Consensus 20 ~~~~ii~apTGsGKT-~~~--~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~-~~g~-~~~~~~~~~~~ 94 (432)
++.-+|+=-|||||| |.+ ...+... ....++++++.++.|-.|+...+.......... .... ....+......
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~ 350 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGK 350 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCC
Confidence 345789999999999 332 3333333 556799999999999999998875543211110 0100 00001111234
Q ss_pred ceEEEcCHHHHHHHHhcCC---CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 95 TLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 95 ~~i~v~T~~~l~~~l~~~~---~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
..|+++|-..+-....... .-.+=-+||+|||| |+..+..... ++ ...++ ...++||.|+
T Consensus 351 ~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~~~~~-~~---~~~~~-a~~~gFTGTP 413 (962)
T COG0610 351 GKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGELAKL-LK---KALKK-AIFIGFTGTP 413 (962)
T ss_pred CcEEEEEecccchhhhcccccccCCCcEEEEEechh-hccccHHHHH-HH---HHhcc-ceEEEeeCCc
Confidence 6899999888776664431 22233479999999 8777655443 22 23333 7899999998
No 156
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.65 E-value=1.5e-06 Score=89.88 Aligned_cols=117 Identities=21% Similarity=0.290 Sum_probs=84.3
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCC-ccEEE-EeecCcccccccC
Q 014006 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRRFI-VSTNIAETSLTVD 290 (432)
Q Consensus 213 ~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g-~~~il-vaT~~~~~Gidi~ 290 (432)
++++||||.-+....-+.+.|.+.. .+.+.-.-+-|..++.+|.++.++|.++ .++|| ++|-+.+-|+|+-
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~-------mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLT 1412 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKY-------MPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLT 1412 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhh-------cCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccC
Confidence 4689999999999998888776642 2455555789999999999999999998 67775 7888999999999
Q ss_pred CeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEecCccchhh
Q 014006 291 GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (432)
Q Consensus 291 ~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~~~~ 351 (432)
+.+.||-.. . ..+-+.++ +.+-|+-|.|..+-=-+|+|+++...+.
T Consensus 1413 GADTVVFvE------H-DWNPMrDL--------QAMDRAHRIGQKrvVNVyRlItrGTLEE 1458 (1549)
T KOG0392|consen 1413 GADTVVFVE------H-DWNPMRDL--------QAMDRAHRIGQKRVVNVYRLITRGTLEE 1458 (1549)
T ss_pred CCceEEEEe------c-CCCchhhH--------HHHHHHHhhcCceeeeeeeehhcccHHH
Confidence 999998521 1 11112221 3334444444444455889998887665
No 157
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.56 E-value=1.4e-05 Score=76.59 Aligned_cols=232 Identities=16% Similarity=0.082 Sum_probs=145.3
Q ss_pred CceEEEcCHHHHHHHHhc----C---CCCCCCcEEEEeCCCc-CCCCHHHHHHHHHHHHhhhcC----------------
Q 014006 94 RTLIKYLTDGVLLREILS----N---PDLSPYSVIILDEAHE-RSLNTDILLGLVKRLVNLRAS---------------- 149 (432)
Q Consensus 94 ~~~i~v~T~~~l~~~l~~----~---~~l~~~~~vViDE~h~-~~~~~~~~~~~l~~~~~~~~~---------------- 149 (432)
.++|++|+|=-|...+-. . ..|+.+.++|+|.||. .+.+-+.+..+++.+- ..|+
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN-~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLN-LQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhc-cCCCCCCCCCHHHHHHHHHc
Confidence 489999999766655542 1 1799999999999993 2223334444444332 2221
Q ss_pred -----CcEEEEEecccChHH---HHhhccCC-Ceee----------cCCCCCceeEEeCCCCCcc---hHHHH----HHH
Q 014006 150 -----KLKILITSATLDGEK---VSKFFSNC-PTLN----------VPGKLYPVEILHSKERPTS---YLESA----LKT 203 (432)
Q Consensus 150 -----~~~ii~~SAT~~~~~---~~~~~~~~-~~i~----------~~~~~~~~~~~~~~~~~~~---~~~~~----~~~ 203 (432)
-.|.|++|+..+++. +.....|. -.+. +..-..++...+....... ..+.. .+.
T Consensus 210 g~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~ 289 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKK 289 (442)
T ss_pred CcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHH
Confidence 269999999988764 33322221 0111 1111223333333222111 11111 122
Q ss_pred HHHHHh-cCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecC
Q 014006 204 AIDIHV-REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI 282 (432)
Q Consensus 204 ~~~~~~-~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~ 282 (432)
++-... ....+.+|||+||--+=-.+-..|++ .++..+.+|--.+..+-.++-..|..|+.+||+-|-=
T Consensus 290 iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~----------~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER 359 (442)
T PF06862_consen 290 ILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKK----------ENISFVQISEYTSNSDISRARSQFFHGRKPILLYTER 359 (442)
T ss_pred HHHHhhhccCCCcEEEEecchhhhHHHHHHHHh----------cCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhH
Confidence 222233 55667999999999999999999886 3677777777777777777888899999999999963
Q ss_pred c--ccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCC--C--CCCeEEEecCccchhh
Q 014006 283 A--ETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGR--T--RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 283 ~--~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR--~--~~G~~~~l~~~~~~~~ 351 (432)
+ =+=..|.+++.||-|++|..+.|++ +++.+.+.... . ....|..||++-+...
T Consensus 360 ~HFfrRy~irGi~~viFY~~P~~p~fY~---------------El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~ 419 (442)
T PF06862_consen 360 FHFFRRYRIRGIRHVIFYGPPENPQFYS---------------ELLNMLDESSGGEVDAADATVTVLYSKYDALR 419 (442)
T ss_pred HhhhhhceecCCcEEEEECCCCChhHHH---------------HHHhhhcccccccccccCceEEEEecHhHHHH
Confidence 2 3345688899999999888776543 44444444432 1 4678999998776544
No 158
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.50 E-value=1.6e-07 Score=76.10 Aligned_cols=118 Identities=22% Similarity=0.393 Sum_probs=61.2
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhcCCC-----CCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCC
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYT-----KSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTS 92 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~~~~-----~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 92 (432)
.+++.++|.||+|+|||+++..+....... ....+.+..|...-.......+.+.++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 356788999999999998888887765321 22344444554444566677777766544322
Q ss_pred CCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q 014006 93 ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (432)
Q Consensus 93 ~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SA 158 (432)
-.+...+.+.+.....-....+|||||+|. ... ......++.+.. ..+.++|+++.
T Consensus 69 ------~~~~~~l~~~~~~~l~~~~~~~lviDe~~~-l~~-~~~l~~l~~l~~--~~~~~vvl~G~ 124 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDALDRRRVVLLVIDEADH-LFS-DEFLEFLRSLLN--ESNIKVVLVGT 124 (131)
T ss_dssp ------TS-HHHHHHHHHHHHHHCTEEEEEEETTHH-HHT-HHHHHHHHHHTC--SCBEEEEEEES
T ss_pred ------cCCHHHHHHHHHHHHHhcCCeEEEEeChHh-cCC-HHHHHHHHHHHh--CCCCeEEEEEC
Confidence 123444433332211111227999999993 214 333333455544 33466666653
No 159
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.50 E-value=1.8e-06 Score=89.11 Aligned_cols=161 Identities=19% Similarity=0.215 Sum_probs=99.4
Q ss_pred cEEEEEecccChH--HHHhhccCCCeeecCCCCCceeEEeCCC----CCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 014006 151 LKILITSATLDGE--KVSKFFSNCPTLNVPGKLYPVEILHSKE----RPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (432)
Q Consensus 151 ~~ii~~SAT~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~ 224 (432)
.++-+||.|...+ ++.+.+ +..++.++... |+....... .......+.++.+...+ ..+.|+||-+.|.+
T Consensus 564 ~kLsGMTGTA~tea~Ef~~IY-~L~Vv~IPTnr-P~~R~D~~D~vy~t~~eK~~Aii~ei~~~~--~~GrPVLVGT~SVe 639 (1112)
T PRK12901 564 HKLAGMTGTAETEAGEFWDIY-KLDVVVIPTNR-PIARKDKEDLVYKTKREKYNAVIEEITELS--EAGRPVLVGTTSVE 639 (1112)
T ss_pred chhcccCCCCHHHHHHHHHHh-CCCEEECCCCC-CcceecCCCeEecCHHHHHHHHHHHHHHHH--HCCCCEEEEeCcHH
Confidence 4578899888543 355555 56677776542 222111111 11222344555555554 45779999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccC--------CeEEEE
Q 014006 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD--------GVVYVI 296 (432)
Q Consensus 225 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~--------~v~~VI 296 (432)
..+.+++.|... ++..-.+++.....+-..|-++=+. -.|-|||++++||.||. +=-+||
T Consensus 640 ~SE~lS~~L~~~----------gI~H~VLNAK~h~~EAeIVA~AG~~--GaVTIATNMAGRGTDIkLg~~V~e~GGL~VI 707 (1112)
T PRK12901 640 ISELLSRMLKMR----------KIPHNVLNAKLHQKEAEIVAEAGQP--GTVTIATNMAGRGTDIKLSPEVKAAGGLAII 707 (1112)
T ss_pred HHHHHHHHHHHc----------CCcHHHhhccchhhHHHHHHhcCCC--CcEEEeccCcCCCcCcccchhhHHcCCCEEE
Confidence 999999999874 4443445554434444444333233 36889999999999996 223455
Q ss_pred eCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecC
Q 014006 297 DCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYP 345 (432)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~ 345 (432)
-+.. +.|.--=.|-.|||||. .||.+-.+++
T Consensus 708 gTer------------------heSrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 708 GTER------------------HESRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred EccC------------------CCcHHHHHHHhcccccCCCCCcceEEEE
Confidence 4333 33555556999999999 6888655553
No 160
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.49 E-value=6.9e-07 Score=83.35 Aligned_cols=135 Identities=17% Similarity=0.077 Sum_probs=70.1
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhh---cC-CCCCcEEEecccchhhhHHHHHHHHHHhCC---ccCCeeeee--eeec
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHR---HG-YTKSGIIGVTQPRRVAAVSVARRVAQELGV---RLGEEVGYA--IRFE 88 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~---~~-~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~---~~~~~~g~~--~~~~ 88 (432)
...+..++.-.+|+|||..+..++.. .. ......+++++|. .+..+....+.+.+.. .+....|.. ....
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLS 101 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTT
T ss_pred cCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcccccccccccccccccccccccc
Confidence 35567888889999999443333331 11 1122368999999 6667777777777632 111111111 0011
Q ss_pred ccCCCCceEEEcCHHHHH--------HHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 89 DRTSERTLIKYLTDGVLL--------REILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 89 ~~~~~~~~i~v~T~~~l~--------~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.......+++++|++.+. ..+. -.++++||+||+|. .-+..... .+.+.... ....+++|||+
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~----~~~~~~vIvDEaH~-~k~~~s~~--~~~l~~l~--~~~~~lLSgTP 172 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLK----QIKWDRVIVDEAHR-LKNKDSKR--YKALRKLR--ARYRWLLSGTP 172 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHH----TSEEEEEEETTGGG-GTTTTSHH--HHHHHCCC--ECEEEEE-SS-
T ss_pred ccccccceeeeccccccccccccccccccc----cccceeEEEecccc-cccccccc--cccccccc--cceEEeecccc
Confidence 223456889999999888 1111 13488999999993 32222211 22232222 36788999998
Q ss_pred Ch
Q 014006 161 DG 162 (432)
Q Consensus 161 ~~ 162 (432)
-.
T Consensus 173 ~~ 174 (299)
T PF00176_consen 173 IQ 174 (299)
T ss_dssp SS
T ss_pred cc
Confidence 33
No 161
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.46 E-value=4.5e-06 Score=78.12 Aligned_cols=129 Identities=28% Similarity=0.321 Sum_probs=90.0
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcC--CCCCcEEEecc-cchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHG--YTKSGIIGVTQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~--~~~~~~vl~~~-P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (432)
+++++.++||||.||||-+..++.... .......+++. -.|.-|.++.+..++.++.++
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------ 263 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------ 263 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce------------------
Confidence 378999999999999955444544443 22333445544 457888888888888887543
Q ss_pred eEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhcc
Q 014006 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS 170 (432)
Q Consensus 96 ~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~ 170 (432)
.++-+|..|...+. .+.+.++|.||=+- |+........-++.+.....+---.+.+|||...+++...+.
T Consensus 264 -~vv~~~~el~~ai~---~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 264 -EVVYSPKELAEAIE---ALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred -EEecCHHHHHHHHH---HhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHH
Confidence 34557777776664 45678999999999 666666655557777776654345788999998877666554
No 162
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.43 E-value=4.5e-06 Score=72.18 Aligned_cols=128 Identities=27% Similarity=0.356 Sum_probs=77.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEE-EecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEEE
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGII-GVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKY 99 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~v-l~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v 99 (432)
+.++++||||+||||.+..+.......+.... +..-..|.-+.++.+.+++.++..+... ....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~---------~~~~------ 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVA---------RTES------ 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEES---------STTS------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchh---------hcch------
Confidence 46788999999999766666655543433333 3344578888888899999887543110 0000
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHH
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKV 165 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~ 165 (432)
.|..+..........+++++|+||-+. +.........-++.+.......--++.+|||...+.+
T Consensus 67 -~~~~~~~~~l~~~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 67 -DPAEIAREALEKFRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp -CHHHHHHHHHHHHHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred -hhHHHHHHHHHHHhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 233333222211123468899999998 5655555455566766665444568889999976553
No 163
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.43 E-value=7.8e-07 Score=77.19 Aligned_cols=120 Identities=23% Similarity=0.301 Sum_probs=69.5
Q ss_pred hhhhHHHHHHHHhc-C-CEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeee
Q 014006 6 ILQYEETIVETVEQ-N-PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (432)
Q Consensus 6 ~~~~q~~i~~~i~~-~-~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~ 83 (432)
+.+-|.+++..+.. + +..++.|+.|||||+++..+...... .+.+++++.||...+..+.+.. +....
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~-~g~~v~~~apT~~Aa~~L~~~~----~~~a~----- 71 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEA-AGKRVIGLAPTNKAAKELREKT----GIEAQ----- 71 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHH-TT--EEEEESSHHHHHHHHHHH----TS-EE-----
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHh-CCCeEEEECCcHHHHHHHHHhh----Ccchh-----
Confidence 34668888888753 3 47889999999999777665544433 3578999999988887766542 21110
Q ss_pred eeeecccCCCCceEEEcCHHHHHHHHhc-----CCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 84 AIRFEDRTSERTLIKYLTDGVLLREILS-----NPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 84 ~~~~~~~~~~~~~i~v~T~~~l~~~l~~-----~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
|-..++..... ...+.+.+++||||+- +++...+..+++.+.. .+.++|++.
T Consensus 72 -----------------Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEas--mv~~~~~~~ll~~~~~---~~~klilvG 128 (196)
T PF13604_consen 72 -----------------TIHSFLYRIPNGDDEGRPELPKKDVLIVDEAS--MVDSRQLARLLRLAKK---SGAKLILVG 128 (196)
T ss_dssp -----------------EHHHHTTEECCEECCSSCC-TSTSEEEESSGG--G-BHHHHHHHHHHS-T----T-EEEEEE
T ss_pred -----------------hHHHHHhcCCcccccccccCCcccEEEEeccc--ccCHHHHHHHHHHHHh---cCCEEEEEC
Confidence 10000000000 0014566799999998 7777766665544433 246777776
No 164
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.42 E-value=3.8e-06 Score=85.38 Aligned_cols=111 Identities=22% Similarity=0.221 Sum_probs=65.5
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccC
Q 014006 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290 (432)
Q Consensus 211 ~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~ 290 (432)
..+.|+||-..+.+..+.+.+.|.+. ++.-..+.+.-...+-..+...=+.| .|-|||++++||-||.
T Consensus 427 ~~gqPvLvgT~sie~SE~ls~~L~~~----------~i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIk 494 (822)
T COG0653 427 EKGQPVLVGTVSIEKSELLSKLLRKA----------GIPHNVLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIK 494 (822)
T ss_pred hcCCCEEEcCcceecchhHHHHHHhc----------CCCceeeccccHHHHHHHHhhcCCCC--ccccccccccCCcccc
Confidence 45679999999999999999999864 33323333333334433443332333 5779999999999985
Q ss_pred CeE---EEEeCCcccceeecCCCCCccceEee-ecHhhHHHhhcccCCC-CCCeEEEec
Q 014006 291 GVV---YVIDCGYVKQRQYNPSSGMYSLDVVQ-ISKVQANQRVGRAGRT-RPGKCYRLY 344 (432)
Q Consensus 291 ~v~---~VI~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~qr~GRaGR~-~~G~~~~l~ 344 (432)
--. .|...| |.+.+.+.. .|.--=.|-.||+||. -||..-.++
T Consensus 495 Lg~~~~~V~~lG-----------GL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~l 542 (822)
T COG0653 495 LGGNPEFVMELG-----------GLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYL 542 (822)
T ss_pred cCCCHHHHHHhC-----------CcEEEecccchhhHHHHHhhcccccCCCcchhhhhh
Confidence 221 122211 112222111 1222223899999999 577765444
No 165
>PRK10536 hypothetical protein; Provisional
Probab=98.36 E-value=2.2e-06 Score=75.96 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=43.6
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcC-CCCCcEEEecccchh
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG-YTKSGIIGVTQPRRV 60 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~-~~~~~~vl~~~P~~~ 60 (432)
-|....|...+.++.+++.+++.||+|||||+++..+..... ...-.++++..|...
T Consensus 58 ~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 58 LARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ 115 (262)
T ss_pred cCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC
Confidence 477889999999999999999999999999977666555322 223456777777754
No 166
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.35 E-value=1.4e-05 Score=75.43 Aligned_cols=88 Identities=19% Similarity=0.203 Sum_probs=64.2
Q ss_pred CCeEEEEecCCCCHHHHhccCCCCCCCc-cE-EEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHh
Q 014006 246 MDAVILPLHGSLPPEMQVRVFSPPPPNC-RR-FIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKV 323 (432)
Q Consensus 246 ~~~~~~~~h~~l~~~~r~~~~~~f~~g~-~~-ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~ 323 (432)
.|+.++-+-|+|++..|...++.|++.. .+ .||+-.+.+..+|+-....|..-| .|...+
T Consensus 661 aGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD------------------PWWNpa 722 (791)
T KOG1002|consen 661 AGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD------------------PWWNPA 722 (791)
T ss_pred cCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec------------------ccccHH
Confidence 5899999999999999999999999764 33 467777777788888888888533 233333
Q ss_pred hHH---HhhcccCCCCCCeEEEecCccchhh
Q 014006 324 QAN---QRVGRAGRTRPGKCYRLYPSTVYHD 351 (432)
Q Consensus 324 ~~~---qr~GRaGR~~~G~~~~l~~~~~~~~ 351 (432)
--+ -|+-|.|..+|=++++++-++..+.
T Consensus 723 Ve~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~ 753 (791)
T KOG1002|consen 723 VEWQAQDRIHRIGQYRPVKVVRFCIENSIEE 753 (791)
T ss_pred HHhhhhhhHHhhcCccceeEEEeehhccHHH
Confidence 333 3555666668888998886665544
No 167
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.35 E-value=6.2e-06 Score=77.84 Aligned_cols=125 Identities=20% Similarity=0.264 Sum_probs=76.0
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCC-cEE-Eecc-cchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCC
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKS-GII-GVTQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSER 94 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~-~~v-l~~~-P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (432)
.+++++++.||||+||||.+..+........+ .++ ++.. ..+.-+.++.+.+++..+..+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~---------------- 198 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH---------------- 198 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE----------------
Confidence 45789999999999999887777665432222 233 3333 3466677777777777654321
Q ss_pred ceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHH
Q 014006 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKV 165 (432)
Q Consensus 95 ~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~ 165 (432)
.+.+++.+...+. .+.+.++|+||++- +......+...+..+.........++.+|||...+.+
T Consensus 199 ---~~~~~~~l~~~l~---~l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 199 ---AVKDGGDLQLALA---ELRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTL 262 (374)
T ss_pred ---ecCCcccHHHHHH---HhcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHH
Confidence 1123333333332 24567899999998 4444445555566654433322468889999866543
No 168
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.35 E-value=1.1e-05 Score=76.89 Aligned_cols=128 Identities=22% Similarity=0.254 Sum_probs=76.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcCC---CCCcEE--EecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCC
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHGY---TKSGII--GVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSER 94 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~~---~~~~~v--l~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (432)
+.+++++||||+||||.+..++..... ..+.++ +-+-+.|..+.++.+.+++..+..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv----------------- 236 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV----------------- 236 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce-----------------
Confidence 457899999999999766666554321 123333 3344667777777776666655432
Q ss_pred ceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecccChHHHHhhcc
Q 014006 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLDGEKVSKFFS 170 (432)
Q Consensus 95 ~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~-~~~~ii~~SAT~~~~~~~~~~~ 170 (432)
....++..+...+.. +.+.++|+||++. ++......+.-++.++.... ..-.++.+|||...+.+.+.+.
T Consensus 237 --~~~~~~~~l~~~L~~---~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 237 --KAIESFKDLKEEITQ---SKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred --EeeCcHHHHHHHHHH---hCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 011234455444432 3678999999999 55433222333455544332 2246788999998776665553
No 169
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.29 E-value=1e-05 Score=68.04 Aligned_cols=127 Identities=20% Similarity=0.193 Sum_probs=79.4
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCce
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (432)
+.+|+.+.+.||+||||||++..+........|...+--.+...... .+ ... ..+|+...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~--~~----~~~----~~i~~~~q---------- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASP--RD----ARR----AGIAMVYQ---------- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCH--HH----HHh----cCeEEEEe----------
Confidence 56899999999999999999998888766554433222222211100 00 000 11232111
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.|.. .+.+..+.
T Consensus 83 ---LS~G~~qrl~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~--~~~~~~~~ 149 (163)
T cd03216 83 ---LSVGERQMVEIARALARNARLLILDEPT-AALTPAEVERLFKVIRRLRAQGVAVIFISHR--LDEVFEIA 149 (163)
T ss_pred ---cCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--HHHHHHhC
Confidence 7888888777777778889999999998 7899888777666665543333455555543 33344443
No 170
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.29 E-value=1.9e-05 Score=74.13 Aligned_cols=122 Identities=17% Similarity=0.276 Sum_probs=70.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEE-Eec-ccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEE
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGII-GVT-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~v-l~~-~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 98 (432)
+.+.+.||||+||||.+..+...... .+.++ ++. -+.|..+.++.+.+++..+..+ +.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~-~GkkVglI~aDt~RiaAvEQLk~yae~lgipv-------------------~v 301 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-------------------IA 301 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHH-cCCcEEEEecCCcchHHHHHHHHHhhhcCCcE-------------------Ee
Confidence 57889999999999877777665542 33333 333 3556555555454444433211 11
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCC-CHHHHHHHHHHHHhhhcCCcEEEEEecccChHH
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSL-NTDILLGLVKRLVNLRASKLKILITSATLDGEK 164 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~-~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~ 164 (432)
..++..+.+.+..-....++++|+||-+- +.. +...+.. +..++........++.+|||.....
T Consensus 302 ~~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~E-L~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 302 VRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEE-MIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred cCCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHH-HHHHHhhcCCCeEEEEECCccChHH
Confidence 23677776655322222368999999997 444 3444444 4444443322244666999886544
No 171
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.29 E-value=1.6e-06 Score=76.67 Aligned_cols=150 Identities=22% Similarity=0.273 Sum_probs=89.4
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchh--------hhHHHHHHHHHHhCCccC--------Ce
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV--------AAVSVARRVAQELGVRLG--------EE 80 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~--------l~~q~~~~~~~~~~~~~~--------~~ 80 (432)
+.+|+.+.|.||+|+||||++..++....+..|...+.-.|.+. =+-|.. .+...+..++- ..
T Consensus 27 v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~-~~d~~fP~tV~d~V~~g~~~~ 105 (254)
T COG1121 27 VEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKS-SVDRSFPITVKDVVLLGRYGK 105 (254)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCccc-ccCCCCCcCHHHHHHccCccc
Confidence 56899999999999999999999999776655544433222100 011111 11111111110 01
Q ss_pred eeeeeee---c------------ccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 81 VGYAIRF---E------------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 81 ~g~~~~~---~------------~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
.|+-.+. + -..-.+..|--.+-|+..+.++.+...++.+++++||.- ..+|......+...+..
T Consensus 106 ~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~-~gvD~~~~~~i~~lL~~ 184 (254)
T COG1121 106 KGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPF-TGVDVAGQKEIYDLLKE 184 (254)
T ss_pred ccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCc-ccCCHHHHHHHHHHHHH
Confidence 1100000 0 000123556667899999999999899999999999987 68888887776665555
Q ss_pred hhcCCcEEEEEecccChHHHHhhcc
Q 014006 146 LRASKLKILITSATLDGEKVSKFFS 170 (432)
Q Consensus 146 ~~~~~~~ii~~SAT~~~~~~~~~~~ 170 (432)
.+..+.-+++.|. +-..+.++++
T Consensus 185 l~~eg~tIl~vtH--DL~~v~~~~D 207 (254)
T COG1121 185 LRQEGKTVLMVTH--DLGLVMAYFD 207 (254)
T ss_pred HHHCCCEEEEEeC--CcHHhHhhCC
Confidence 5554445555554 4445666653
No 172
>PF13245 AAA_19: Part of AAA domain
Probab=98.28 E-value=3.2e-06 Score=60.70 Aligned_cols=56 Identities=27% Similarity=0.357 Sum_probs=40.3
Q ss_pred HHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcC--CCCCcEEEecccchhhhHHHHHHH
Q 014006 14 VETVEQNPVVVVIGETGSGKS-TQLSQILHRHG--YTKSGIIGVTQPRRVAAVSVARRV 69 (432)
Q Consensus 14 ~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~--~~~~~~vl~~~P~~~l~~q~~~~~ 69 (432)
..++.++..++|.||.||||| +++..+..... ...+.+++++.|++..+.++.+++
T Consensus 4 ~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 4 RRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 335555677788999999999 44444433331 122679999999999999988877
No 173
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.25 E-value=5.5e-06 Score=70.52 Aligned_cols=130 Identities=22% Similarity=0.204 Sum_probs=77.2
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeeccc--CCCC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDR--TSER 94 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~ 94 (432)
+.+|+.+.+.||+||||||++..+........|...+--.+....... .+.+. +++....... ..-.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~---~~~~~--------i~~~~q~~~~~~~tv~ 93 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPN---ELGDH--------VGYLPQDDELFSGSIA 93 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHH---HHHhh--------eEEECCCCccccCcHH
Confidence 568999999999999999999988887665554333222221111111 11111 1111000000 0000
Q ss_pred ceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 95 ~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.++ .+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|.-+
T Consensus 94 ~~l--LS~G~~qrv~la~al~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 156 (173)
T cd03246 94 ENI--LSGGQRQRLGLARALYGNPRILVLDEPN-SHLDVEGERALNQAIAALKAAGATRIVIAHRP 156 (173)
T ss_pred HHC--cCHHHHHHHHHHHHHhcCCCEEEEECCc-cccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 111 6788888777777778899999999998 78888887776666655443345566665543
No 174
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.25 E-value=3e-06 Score=72.50 Aligned_cols=140 Identities=19% Similarity=0.216 Sum_probs=80.5
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecc---cCCC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED---RTSE 93 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~ 93 (432)
+.+|+.+.+.||+||||||++..+........|...+--.+..... +....+.+ .+++...... ...-
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~~--------~i~~~~q~~~~~~~~t~ 93 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLE-DELPPLRR--------RIGMVFQDFALFPHLTV 93 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc-hhHHHHhh--------cEEEEecCCccCCCCCH
Confidence 5689999999999999999999888776555443332222211110 00011111 1121111000 0011
Q ss_pred CceEEE-cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhh
Q 014006 94 RTLIKY-LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKF 168 (432)
Q Consensus 94 ~~~i~v-~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~ 168 (432)
..++.+ .+.|...+..+....+.+.+++++||.. ..+|......+.+.+...... +..+++.|. +.+.+.++
T Consensus 94 ~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH--~~~~~~~~ 167 (178)
T cd03229 94 LENIALGLSGGQQQRVALARALAMDPDVLLLDEPT-SALDPITRREVRALLKSLQAQLGITVVLVTH--DLDEAARL 167 (178)
T ss_pred HHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC--CHHHHHHh
Confidence 122323 7888888777777778889999999998 789988877766655554433 244555544 33444434
No 175
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.24 E-value=2.9e-05 Score=63.74 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=32.2
Q ss_pred hHHHHHHHHhc--CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecc
Q 014006 9 YEETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ 56 (432)
Q Consensus 9 ~q~~i~~~i~~--~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~ 56 (432)
..+++...+.. +..+++.||+|+|||+++..+....... +..++++.
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~ 54 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLN 54 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEe
Confidence 34455666655 7899999999999998888777665422 33444443
No 176
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.23 E-value=3.7e-06 Score=71.61 Aligned_cols=137 Identities=23% Similarity=0.273 Sum_probs=80.1
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeeccc---CCC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDR---TSE 93 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~ 93 (432)
+.+|+.+.|.||+||||||++..+........|...+--.+..... ..+.+ .+++....... ..-
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~~~--------~i~~~~q~~~~~~~~tv 90 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP----EEVKR--------RIGYLPEEPSLYENLTV 90 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch----Hhhhc--------cEEEEecCCccccCCcH
Confidence 5689999999999999999999888876555443332222221111 11111 12211110000 000
Q ss_pred CceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 94 ~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
..++. .+.|...+..+......+.+++++||.- ..+|......+.+.+.....++..+|+.|. +.+.+..+.
T Consensus 91 ~~~~~-LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiii~th--~~~~~~~~~ 162 (173)
T cd03230 91 RENLK-LSGGMKQRLALAQALLHDPELLILDEPT-SGLDPESRREFWELLRELKKEGKTILLSSH--ILEEAERLC 162 (173)
T ss_pred HHHhh-cCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEECC--CHHHHHHhC
Confidence 01111 6788877777766677889999999998 789998877766666655433344555543 444444443
No 177
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.23 E-value=3.2e-06 Score=70.91 Aligned_cols=139 Identities=17% Similarity=0.151 Sum_probs=79.6
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccc----------------------hhhhHHHHHHHHHHhC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR----------------------RVAAVSVARRVAQELG 74 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~----------------------~~l~~q~~~~~~~~~~ 74 (432)
+++|+.+-+.||+|+||||++..+...+.+.+|+..+.-..+ |..+.+....|+...+
T Consensus 25 ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~ 104 (245)
T COG4555 25 AEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNG 104 (245)
T ss_pred eccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhh
Confidence 468999999999999999999988888877777655543322 3344444444444443
Q ss_pred CccCCeeee----eeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCC
Q 014006 75 VRLGEEVGY----AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (432)
Q Consensus 75 ~~~~~~~g~----~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~ 150 (432)
..-...-.. ...++-..-.+.++-=.+.|+-.+.........+.+++|+||.- ..+|--....+.+.+.+....
T Consensus 105 l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~-sGLDi~~~r~~~dfi~q~k~e- 182 (245)
T COG4555 105 LSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPT-SGLDIRTRRKFHDFIKQLKNE- 182 (245)
T ss_pred hhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCC-CCccHHHHHHHHHHHHHhhcC-
Confidence 221100000 00000000001112123444444444445567888999999997 788887777755555555544
Q ss_pred cEEEEEe
Q 014006 151 LKILITS 157 (432)
Q Consensus 151 ~~ii~~S 157 (432)
-+.+++|
T Consensus 183 gr~viFS 189 (245)
T COG4555 183 GRAVIFS 189 (245)
T ss_pred CcEEEEe
Confidence 3445554
No 178
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.21 E-value=6.6e-06 Score=69.84 Aligned_cols=118 Identities=17% Similarity=0.163 Sum_probs=76.4
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCc
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (432)
.+.+|+.+.+.||+||||||++..+........| .+.+--- .+++... . .
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~----------------------~i~~~~q--~--~--- 70 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGD-NDEWDGI----------------------TPVYKPQ--Y--I--- 70 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCc-EEEECCE----------------------EEEEEcc--c--C---
Confidence 5678999999999999999999988877655444 3333210 1221110 0 0
Q ss_pred eEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCC-cEEEEEecccChHHHHhhc
Q 014006 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK-LKILITSATLDGEKVSKFF 169 (432)
Q Consensus 96 ~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~-~~ii~~SAT~~~~~~~~~~ 169 (432)
. .+.|+..+..+......+.+++++||.- ..+|......+.+.+....... .-+++.|. +.+.+..+.
T Consensus 71 ~---LSgGq~qrv~laral~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~~~~~~~~tiiivsH--~~~~~~~~~ 139 (177)
T cd03222 71 D---LSGGELQRVAIAAALLRNATFYLFDEPS-AYLDIEQRLNAARAIRRLSEEGKKTALVVEH--DLAVLDYLS 139 (177)
T ss_pred C---CCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHcCCCEEEEEEC--CHHHHHHhC
Confidence 0 6777777776666677888999999998 7889888777666665544332 44555544 334344443
No 179
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.21 E-value=1.5e-05 Score=65.50 Aligned_cols=103 Identities=22% Similarity=0.325 Sum_probs=69.8
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCce
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (432)
+.+|+.+.+.||+||||||++..+........| .+.+-- + ..+++...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~~--~-------------------~~i~~~~~---------- 70 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG-IVTWGS--T-------------------VKIGYFEQ---------- 70 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCce-EEEECC--e-------------------EEEEEEcc----------
Confidence 568899999999999999999988877655444 333321 0 12222111
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SA 158 (432)
.+.|...+..+......+.+++++||.- ..+|.+....+.+.+... +..+++.|.
T Consensus 71 ---lS~G~~~rv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~---~~til~~th 125 (144)
T cd03221 71 ---LSGGEKMRLALAKLLLENPNLLLLDEPT-NHLDLESIEALEEALKEY---PGTVILVSH 125 (144)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHc---CCEEEEEEC
Confidence 6788887777776678889999999998 788888777655554433 234455443
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.19 E-value=1.8e-06 Score=74.39 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=37.0
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhc-CCCCCcEEEecccchhh
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVA 61 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~-~~~~~~~vl~~~P~~~l 61 (432)
|....|...++++...+.+++.||.|||||+++....... ....-.+++++.|....
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 7788999999999999999999999999995554444332 22344588888887654
No 181
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.19 E-value=3.9e-05 Score=74.46 Aligned_cols=127 Identities=23% Similarity=0.303 Sum_probs=74.2
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcC-CCCCcEEE-e-cccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHG-YTKSGIIG-V-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~-~~~~~~vl-~-~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (432)
+++.+++.||||+||||.+..++.... ...+.++. + .-|.|..+.++...+++..+..+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------------------ 281 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV------------------ 281 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce------------------
Confidence 467899999999999977666655443 23333333 3 34556656566666666554322
Q ss_pred eEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh-hhcCCcEEEEEecccChHHHHhh
Q 014006 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN-LRASKLKILITSATLDGEKVSKF 168 (432)
Q Consensus 96 ~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~-~~~~~~~ii~~SAT~~~~~~~~~ 168 (432)
....++..+...+.. +.+.++|+||.+-....+...... +..++. .......++++|||.....+.+.
T Consensus 282 -~~~~~~~~l~~~l~~---~~~~DlVlIDt~G~~~~d~~~~~~-L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 282 -EVVYDPKELAKALEQ---LRDCDVILIDTAGRSQRDKRLIEE-LKALIEFSGEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred -EccCCHHhHHHHHHH---hCCCCEEEEeCCCCCCCCHHHHHH-HHHHHhccCCCCeEEEEEECCCCHHHHHHH
Confidence 111344445544432 346899999999733344444333 555554 22222457889999877665443
No 182
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.19 E-value=2.6e-05 Score=77.64 Aligned_cols=115 Identities=23% Similarity=0.296 Sum_probs=83.7
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCc-c-EEEEeecCccccccc
Q 014006 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNC-R-RFIVSTNIAETSLTV 289 (432)
Q Consensus 212 ~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~-~-~ilvaT~~~~~Gidi 289 (432)
.+.++|||-.=-..-.=+-..|.. .++...-+-|...-++|+.+++.|...+ + -.|++|-+.+-|||+
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~----------l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINL 845 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDT----------LGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINL 845 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHh----------cCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecc
Confidence 346899987533322222222332 4777888999999999999999998765 3 458999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEecCccchhh
Q 014006 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (432)
Q Consensus 290 ~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~~~~ 351 (432)
-..++||-+|. .|+|..- -+..-|+-|.|..+|=.+|+|+++...+.
T Consensus 846 t~An~VIihD~----dFNP~dD-----------~QAEDRcHRvGQtkpVtV~rLItk~TIEE 892 (941)
T KOG0389|consen 846 TCANTVIIHDI----DFNPYDD-----------KQAEDRCHRVGQTKPVTVYRLITKSTIEE 892 (941)
T ss_pred cccceEEEeec----CCCCccc-----------chhHHHHHhhCCcceeEEEEEEecCcHHH
Confidence 99999996664 3444331 14556777777778999999999887765
No 183
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.19 E-value=1.4e-05 Score=71.08 Aligned_cols=144 Identities=17% Similarity=0.231 Sum_probs=85.8
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhh-HHHHHHH---HHHhCCccCCee----eee--e-
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRV---AQELGVRLGEEV----GYA--I- 85 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~-~q~~~~~---~~~~~~~~~~~~----g~~--~- 85 (432)
+.+|+.+.|.||+||||||++..+.....+..|...+.-.+...+. .+.++.+ .+......+..+ ..+ .
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~ 104 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPH 104 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcc
Confidence 5689999999999999999999999888766665555554443322 2223322 222111111111 110 0
Q ss_pred -eecccCC-------------------CCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 86 -RFEDRTS-------------------ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 86 -~~~~~~~-------------------~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
....... ....+--.+-|...+.+......++..++++||.- ..+|......+++.+.+
T Consensus 105 ~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPT-s~LDi~~Q~evl~ll~~ 183 (258)
T COG1120 105 LGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPT-SHLDIAHQIEVLELLRD 183 (258)
T ss_pred cccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCc-cccCHHHHHHHHHHHHH
Confidence 0000000 01223345667777777777678889999999998 77888888887777766
Q ss_pred hhcC-CcEEEEEecccC
Q 014006 146 LRAS-KLKILITSATLD 161 (432)
Q Consensus 146 ~~~~-~~~ii~~SAT~~ 161 (432)
.... +.-+|+...-+|
T Consensus 184 l~~~~~~tvv~vlHDlN 200 (258)
T COG1120 184 LNREKGLTVVMVLHDLN 200 (258)
T ss_pred HHHhcCCEEEEEecCHH
Confidence 5532 344555554443
No 184
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.18 E-value=1.9e-05 Score=81.91 Aligned_cols=122 Identities=21% Similarity=0.236 Sum_probs=78.4
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCC-CcEEEecccchhhhHHHHHHHHHHhCCccCCeee
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTK-SGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~-~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g 82 (432)
..+.+-|.+++..+..++..+|.|+.|+|||+++..++....... ...++.+.||--.+..+. +..+...
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~----e~~g~~a----- 392 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLG----EVTGLTA----- 392 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHH----HhcCCcc-----
Confidence 456778999999999999999999999999988877766543322 157888899987775443 3222110
Q ss_pred eeeeecccCCCCceEEEcCHHHHHHHHh------cCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEE
Q 014006 83 YAIRFEDRTSERTLIKYLTDGVLLREIL------SNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (432)
Q Consensus 83 ~~~~~~~~~~~~~~i~v~T~~~l~~~l~------~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~ 156 (432)
.|-.+++.... ........++|||||++ |++...+..+++ ..+.+.++|++
T Consensus 393 -----------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaS--Mvd~~~~~~Ll~----~~~~~~rlilv 449 (720)
T TIGR01448 393 -----------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESS--MMDTWLALSLLA----ALPDHARLLLV 449 (720)
T ss_pred -----------------ccHHHHhhccCCccchhhhhccccCCEEEEeccc--cCCHHHHHHHHH----hCCCCCEEEEE
Confidence 11111111100 00112457899999999 788776655444 33456788887
Q ss_pred e
Q 014006 157 S 157 (432)
Q Consensus 157 S 157 (432)
.
T Consensus 450 G 450 (720)
T TIGR01448 450 G 450 (720)
T ss_pred C
Confidence 5
No 185
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.17 E-value=8.9e-06 Score=77.56 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=61.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc-CCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEEE
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKY 99 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~-~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v 99 (432)
+.++|.|..|||||.++..++... ....+..++++.+...+...+...+.+.. ........+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~-----------------~~~~~~~~~ 64 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKY-----------------NPKLKKSDF 64 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhc-----------------ccchhhhhh
Confidence 468999999999997777676665 23445677888888888877777665443 001112223
Q ss_pred cCHHHHHHHHh-cCCCCCCCcEEEEeCCCcCCCC
Q 014006 100 LTDGVLLREIL-SNPDLSPYSVIILDEAHERSLN 132 (432)
Q Consensus 100 ~T~~~l~~~l~-~~~~l~~~~~vViDE~h~~~~~ 132 (432)
..+..+..... ......++++||||||| +...
T Consensus 65 ~~~~~~i~~~~~~~~~~~~~DviivDEAq-rl~~ 97 (352)
T PF09848_consen 65 RKPTSFINNYSESDKEKNKYDVIIVDEAQ-RLRT 97 (352)
T ss_pred hhhHHHHhhcccccccCCcCCEEEEehhH-hhhh
Confidence 33444433332 33467889999999999 6555
No 186
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.16 E-value=1.1e-05 Score=67.53 Aligned_cols=117 Identities=23% Similarity=0.286 Sum_probs=71.3
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecc-cchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~-P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (432)
+.+|+.+.|.|++|+|||+++..+........+ .+.+-. +..... ...+.. .+++...
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G-~i~~~~~~~~~~~---~~~~~~--------~i~~~~q--------- 80 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSG-EILIDGKDIAKLP---LEELRR--------RIGYVPQ--------- 80 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEEcccCC---HHHHHh--------ceEEEee---------
Confidence 467899999999999999999988877654433 333221 111110 001111 1221111
Q ss_pred eEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 96 ~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
.+.|...+..+......+.+++++||.. ..+|......+.+.+......+..+++.|..
T Consensus 81 ----lS~G~~~r~~l~~~l~~~~~i~ilDEp~-~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~ 139 (157)
T cd00267 81 ----LSGGQRQRVALARALLLNPDLLLLDEPT-SGLDPASRERLLELLRELAEEGRTVIIVTHD 139 (157)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 6777766666655566678999999998 7888888776556555544333455555543
No 187
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.15 E-value=1.3e-05 Score=74.05 Aligned_cols=149 Identities=19% Similarity=0.197 Sum_probs=89.9
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEec-cc---------------------chhhhHHHHHHHHHHhC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-QP---------------------RRVAAVSVARRVAQELG 74 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~-~P---------------------~~~l~~q~~~~~~~~~~ 74 (432)
+.+|+.+.+.||+||||||++..++.......|...+.- .+ -...+.+..+.++...+
T Consensus 28 i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~ 107 (293)
T COG1131 28 VEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYG 107 (293)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhC
Confidence 567899999999999999999999887766544322221 11 12223444444444443
Q ss_pred CccC--C-eee---eeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc
Q 014006 75 VRLG--E-EVG---YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (432)
Q Consensus 75 ~~~~--~-~~g---~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~ 148 (432)
.... . .+- ....... ..+..+--.+.|+-.+..+....+.+.+++|+||.- ..+|......+.+.+.....
T Consensus 108 ~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt-~GLDp~~~~~~~~~l~~l~~ 184 (293)
T COG1131 108 LSKEEAEERIEELLELFGLED--KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT-SGLDPESRREIWELLRELAK 184 (293)
T ss_pred CChhHHHHHHHHHHHHcCCch--hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC-cCCCHHHHHHHHHHHHHHHh
Confidence 2210 0 000 0000000 012334446778877777777778889999999998 89999998887777766665
Q ss_pred CCcEEEEEecccChHHHHhhc
Q 014006 149 SKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 149 ~~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+-..|++| |...+.+...+
T Consensus 185 ~g~~tvlis-sH~l~e~~~~~ 204 (293)
T COG1131 185 EGGVTILLS-THILEEAEELC 204 (293)
T ss_pred CCCcEEEEe-CCcHHHHHHhC
Confidence 433566666 44444455543
No 188
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.14 E-value=1.2e-05 Score=68.91 Aligned_cols=128 Identities=20% Similarity=0.254 Sum_probs=76.2
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhh-hHHHHHHH------HHHhCCccCCeeeeeeeecc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRV------AQELGVRLGEEVGYAIRFED 89 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l-~~q~~~~~------~~~~~~~~~~~~g~~~~~~~ 89 (432)
+.+|+.+.+.||+||||||++..+........|...+--.+.... .......+ .+.++.. .
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~------------~ 89 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLA------------H 89 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCH------------h
Confidence 568999999999999999999988887655554333222222110 01111111 1111111 0
Q ss_pred cCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecc
Q 014006 90 RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSAT 159 (432)
Q Consensus 90 ~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT 159 (432)
. ....+.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+.....+ +..+|+.|..
T Consensus 90 ~--~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~-~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~ 157 (180)
T cd03214 90 L--ADRPFNELSGGERQRVLLARALAQEPPILLLDEPT-SHLDIAHQIELLELLRRLARERGKTVVMVLHD 157 (180)
T ss_pred H--hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 0 01123346788877777776677889999999998 788888766655555544332 3456665543
No 189
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.14 E-value=2e-05 Score=79.44 Aligned_cols=135 Identities=18% Similarity=0.237 Sum_probs=78.9
Q ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcC---CC-CCcEEEecccchhhhHHHHHHHHHHhCCccCCeeee
Q 014006 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG---YT-KSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (432)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~---~~-~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~ 83 (432)
..|.+++.....++.++|+|+.|+||||.+..++.... .. ...++.+..||--.+..+.+.+...... ....
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~-l~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKN-LAAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcc-cccc---
Confidence 35777888888899999999999999977666554321 11 1247899999988887777665443211 0000
Q ss_pred eeeecccCCCCceEEEcCHHHHHHHHh-------cCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEE
Q 014006 84 AIRFEDRTSERTLIKYLTDGVLLREIL-------SNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (432)
Q Consensus 84 ~~~~~~~~~~~~~i~v~T~~~l~~~l~-------~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~ 156 (432)
........+...|-.+++.... .......+++|||||+- |++...+..+++. .+.+.++|++
T Consensus 224 -----~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS--Mvd~~l~~~ll~a----l~~~~rlIlv 292 (586)
T TIGR01447 224 -----EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLLKA----LPPNTKLILL 292 (586)
T ss_pred -----hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc--cCCHHHHHHHHHh----cCCCCEEEEE
Confidence 0000000111223333322111 11123468999999997 7887765554443 3445788877
Q ss_pred e
Q 014006 157 S 157 (432)
Q Consensus 157 S 157 (432)
.
T Consensus 293 G 293 (586)
T TIGR01447 293 G 293 (586)
T ss_pred C
Confidence 5
No 190
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.13 E-value=2.3e-05 Score=66.58 Aligned_cols=128 Identities=22% Similarity=0.256 Sum_probs=74.6
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeeccc--CCCC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDR--TSER 94 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~ 94 (432)
+.+|+.+.+.||+||||||++..+........|...+--.+...... ..+.+. +++....... ..-.
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~---~~~~~~--------i~~~~~~~~~~~~t~~ 93 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDL---ESLRKN--------IAYVPQDPFLFSGTIR 93 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCH---HHHHhh--------EEEEcCCchhccchHH
Confidence 56899999999999999999999988776555543322222111110 111111 1111000000 0000
Q ss_pred ceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 95 ~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
.++ .+.|...+..+......+.+++++||.- ..+|......+.+.+.... .+..+++.|..
T Consensus 94 e~l--LS~G~~~rl~la~al~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~ 154 (171)
T cd03228 94 ENI--LSGGQRQRIAIARALLRDPPILILDEAT-SALDPETEALILEALRALA-KGKTVIVIAHR 154 (171)
T ss_pred HHh--hCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence 111 6777777776666677889999999998 7899888777555555543 23445555443
No 191
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.10 E-value=4.7e-05 Score=71.32 Aligned_cols=132 Identities=18% Similarity=0.202 Sum_probs=76.3
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEe-cccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCce
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~-~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (432)
.+++.+++.||||+||||.+..+.......+....++ .-|.|..+.++.+.+++..+..+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv------------------- 264 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL------------------- 264 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE-------------------
Confidence 3577899999999999977766665443222223333 34566666655555554433211
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
....+|..+...+.......+.++|+||=+- +.......+.-++.+........-++.+|||.....+.+.+
T Consensus 265 ~~~~dp~dL~~al~~l~~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 265 IVATSPAELEEAVQYMTYVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 1123577665554322234568999999997 44333333333555554433334466788888766555443
No 192
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.10 E-value=3.1e-05 Score=66.28 Aligned_cols=129 Identities=17% Similarity=0.158 Sum_probs=76.4
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecc--cCCCC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED--RTSER 94 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~ 94 (432)
+.+|+.+.+.||+||||||++..+........|...+--.+.... ...+.+. +++...... ...-.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~----~~~~~~~--------i~~~~q~~~~~~~tv~ 92 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL----EKALSSL--------ISVLNQRPYLFDTTLR 92 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH----HHHHHhh--------EEEEccCCeeecccHH
Confidence 568999999999999999999988887665554332222221111 1111111 111100000 00000
Q ss_pred ce-EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 95 TL-IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 95 ~~-i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
.+ ..-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+.... .+.-+|+.|.-
T Consensus 93 ~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~ 156 (178)
T cd03247 93 NNLGRRFSGGERQRLALARILLQDAPIVLLDEPT-VGLDPITERQLLSLIFEVL-KDKTLIWITHH 156 (178)
T ss_pred HhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence 01 3346778877777777778889999999998 7888888776666665543 33455555543
No 193
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.10 E-value=6.7e-06 Score=71.91 Aligned_cols=152 Identities=20% Similarity=0.223 Sum_probs=79.6
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcC---CCCCcEEEecccchhhhHHHHHHH---HHHhCCccCCeeeeeeeeccc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHG---YTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEVGYAIRFEDR 90 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~---~~~~~~vl~~~P~~~l~~q~~~~~---~~~~~~~~~~~~g~~~~~~~~ 90 (432)
+.+|+.+.|.||+||||||++..+..... ...|...+.-.+.........+.+ .+.........+.....+...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 109 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALR 109 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhh
Confidence 56899999999999999999998887765 334432222222211100000000 000000000000000000000
Q ss_pred CCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 91 TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 91 ~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
...+..+.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+..........++++.+-+.+.+.++.
T Consensus 110 ~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~ 187 (202)
T cd03233 110 CKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNST-RGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLF 187 (202)
T ss_pred hccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhC
Confidence 0012233346778777777766677889999999988 78888887776666655443212234444454444444443
No 194
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.09 E-value=2.7e-05 Score=78.67 Aligned_cols=135 Identities=17% Similarity=0.228 Sum_probs=78.2
Q ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcC---CCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeee
Q 014006 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG---YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (432)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~---~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~ 84 (432)
..|.+++.....++.++|+|++|+||||.+..++.... .....++.+..||.-.|..+.+.+...... .+.
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~-~~~----- 228 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQ-LPL----- 228 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhc-ccc-----
Confidence 35667777777889999999999999977666654431 123457888999988887777665432210 000
Q ss_pred eeecccCCCCceEEEcCHHHHHHHHhc-------CCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 85 IRFEDRTSERTLIKYLTDGVLLREILS-------NPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 85 ~~~~~~~~~~~~i~v~T~~~l~~~l~~-------~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
..........-..|-.+++..... ....-.+++|||||+- |++...+..+++. .+.+.++|++.
T Consensus 229 ---~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS--Mvd~~lm~~ll~a----l~~~~rlIlvG 299 (615)
T PRK10875 229 ---TDEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS--MVDLPMMARLIDA----LPPHARVIFLG 299 (615)
T ss_pred ---chhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh--cccHHHHHHHHHh----cccCCEEEEec
Confidence 000000000011222222211111 1123356899999997 7887666554443 44557888876
No 195
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=98.09 E-value=0.0023 Score=73.48 Aligned_cols=246 Identities=13% Similarity=0.146 Sum_probs=134.1
Q ss_pred CCchhhhHHHHHHHHhcC--CEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCe
Q 014006 3 NLPILQYEETIVETVEQN--PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~--~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~ 80 (432)
.+++.+-|.+++..+... +..+|+|+.|+|||+.+..+..... ..|.+|+.+.|+...+..+.+.. +......
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~-~~G~~V~~lAPTgrAA~~L~e~~----g~~A~Ti 501 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLAS-EQGYEIQIITAGSLSAQELRQKI----PRLASTF 501 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHh----cchhhhH
Confidence 467778888888887764 7999999999999988877765443 34678889999987766655432 2111000
Q ss_pred eeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc-
Q 014006 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT- 159 (432)
Q Consensus 81 ~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT- 159 (432)
..+ ....... ....|...++ .....+.+-++|||||+- +++...+..+++.... .+.++|++.=+
T Consensus 502 ~~~----l~~l~~~--~~~~tv~~fl---~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~~---~garvVlvGD~~ 567 (1960)
T TIGR02760 502 ITW----VKNLFND--DQDHTVQGLL---DKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAEQ---HNSKLILLNDSA 567 (1960)
T ss_pred HHH----HHhhccc--ccchhHHHhh---cccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHhh---cCCEEEEEcChh
Confidence 000 0000000 0011222222 122245678899999998 7888777776655432 25788887633
Q ss_pred -cCh----HHHHhhcc-CCCeeecCC---CCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHH
Q 014006 160 -LDG----EKVSKFFS-NCPTLNVPG---KLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (432)
Q Consensus 160 -~~~----~~~~~~~~-~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~ 230 (432)
+++ ..+..+.. +.+.+.... ...++ ....................+. ......+|+.++.++...+.
T Consensus 568 QL~sV~aG~~f~~L~~~gv~t~~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~--~~r~~tliv~~t~~dr~~Ln 643 (1960)
T TIGR02760 568 QRQGMSAGSAIDLLKEGGVTTYAWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLT--PDRQNSQVLATTHREQQDLT 643 (1960)
T ss_pred hcCccccchHHHHHHHCCCcEEEeecccccCcce--eeeccCchHHHHHHHHHHHhcc--cccCceEEEcCCcHHHHHHH
Confidence 122 33443322 233333222 11222 1111112122222222222221 23447999999999999999
Q ss_pred HHHHHHHhhccCCCCCCeEEEEec-CCCCHHHHhccCCCCCCC
Q 014006 231 SKLEDKIRSLDEGSCMDAVILPLH-GSLPPEMQVRVFSPPPPN 272 (432)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~~~~~h-~~l~~~~r~~~~~~f~~g 272 (432)
..++..+.....-...+..+..+. ..|+..++... ..|+.|
T Consensus 644 ~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 644 QIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred HHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 999988743332212344444443 35677776533 444443
No 196
>PRK14974 cell division protein FtsY; Provisional
Probab=98.06 E-value=7.5e-05 Score=69.85 Aligned_cols=124 Identities=19% Similarity=0.274 Sum_probs=69.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEE-ecc-cchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEE
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-VTQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl-~~~-P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 98 (432)
..++++|++|+||||.+..++..... .+.+++ +.. +.|..+.++.+.++..++..+.. + ....
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~-~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~-------~~g~----- 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKK-NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--H-------KYGA----- 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--c-------cCCC-----
Confidence 47889999999999877666654433 333443 333 34566666666666666643311 0 0000
Q ss_pred EcCHHH-HHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChH
Q 014006 99 YLTDGV-LLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGE 163 (432)
Q Consensus 99 v~T~~~-l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~ 163 (432)
.|.. +.+.+.. ....+.++|+||+++ +......++.-++.+.........++.++||...+
T Consensus 206 --dp~~v~~~ai~~-~~~~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 206 --DPAAVAYDAIEH-AKARGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred --CHHHHHHHHHHH-HHhCCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh
Confidence 1221 1121111 122457899999999 55433334444666665444446788889987543
No 197
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.05 E-value=4.8e-05 Score=61.90 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=28.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccch
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR 59 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~ 59 (432)
++.+++.||+|||||+++..++....... ..++++.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEE
Confidence 57889999999999999888877665433 2355554443
No 198
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.05 E-value=6.7e-06 Score=71.37 Aligned_cols=138 Identities=17% Similarity=0.162 Sum_probs=75.5
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhc--CCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRH--GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSER 94 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~--~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (432)
+.+|+.+.+.||+||||||++..+.... ....|...+--.+... .+..+.+.-.+ .......+.... ....-.
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~--~~~~~~i~~~~-q~~~~~~~~t~~--~~i~~~ 106 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK--RSFRKIIGYVP-QDDILHPTLTVR--ETLMFA 106 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch--HhhhheEEEcc-CcccCCCCCcHH--HHHHHH
Confidence 5689999999999999999999888876 5444433322222111 01000000000 000000000000 000000
Q ss_pred ceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 95 ~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
..+.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|.-+
T Consensus 107 ~~~~~LS~G~~qrv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 171 (194)
T cd03213 107 AKLRGLSGGERKRVSIALELVSNPSLLFLDEPT-SGLDSSSALQVMSLLRRLADTGRTIICSIHQP 171 (194)
T ss_pred HHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 001145777777776666677889999999998 78998887776666655443334556655543
No 199
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.02 E-value=3.8e-05 Score=66.82 Aligned_cols=142 Identities=20% Similarity=0.240 Sum_probs=80.6
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchh--hhHHHHHHH---HHHhC--------CccCCeeee
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV--AAVSVARRV---AQELG--------VRLGEEVGY 83 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~--l~~q~~~~~---~~~~~--------~~~~~~~g~ 83 (432)
++.|+..+|.||+||||||++..+.....+..+...++-.+... ...++-+++ ...+. ..-....|+
T Consensus 54 V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~ 133 (257)
T COG1119 54 VNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGF 133 (257)
T ss_pred ecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecc
Confidence 56889999999999999999998888776665555555444221 112222221 00100 000111121
Q ss_pred eeee--cc-cC-------------------CCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHH
Q 014006 84 AIRF--ED-RT-------------------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (432)
Q Consensus 84 ~~~~--~~-~~-------------------~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~ 141 (432)
.... .. .. ..+...-..+-|...+.+..+..+.+..++|+||.- ..+|......+++
T Consensus 134 ~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~-~GLDl~~re~ll~ 212 (257)
T COG1119 134 FASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPA-QGLDLIAREQLLN 212 (257)
T ss_pred cccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcc-ccCChHHHHHHHH
Confidence 1000 00 00 011222234556666666666678889999999987 6788777766666
Q ss_pred HHHhhhc--CCcEEEEEecc
Q 014006 142 RLVNLRA--SKLKILITSAT 159 (432)
Q Consensus 142 ~~~~~~~--~~~~ii~~SAT 159 (432)
.+..... ...++|+.|.-
T Consensus 213 ~l~~~~~~~~~~~ll~VtHh 232 (257)
T COG1119 213 RLEELAASPGAPALLFVTHH 232 (257)
T ss_pred HHHHHhcCCCCceEEEEEcc
Confidence 6655432 25778888754
No 200
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.01 E-value=1.6e-05 Score=68.32 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=79.6
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeee------ccc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF------EDR 90 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~------~~~ 90 (432)
+.+|+.+.+.||+||||||++..+........|...+--.+....... ....+ .+++.... ...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~--~~~~~--------~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPR--DAIRA--------GIAYVPEDRKREGLVLD 92 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHH--HHHhC--------CeEEecCCcccCcccCC
Confidence 568999999999999999999988887765555333322222111100 00000 11111000 000
Q ss_pred CCCCceEEE---cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHh
Q 014006 91 TSERTLIKY---LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSK 167 (432)
Q Consensus 91 ~~~~~~i~v---~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~ 167 (432)
.....++.+ .+.|+..+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|. +.+.+.+
T Consensus 93 ~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh--~~~~~~~ 169 (182)
T cd03215 93 LSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPT-RGVDVGAKAEIYRLIRELADAGKAVLLISS--ELDELLG 169 (182)
T ss_pred CcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeC--CHHHHHH
Confidence 000001111 6778777777777778899999999998 788988877766666554333345555544 3334444
Q ss_pred hc
Q 014006 168 FF 169 (432)
Q Consensus 168 ~~ 169 (432)
+.
T Consensus 170 ~~ 171 (182)
T cd03215 170 LC 171 (182)
T ss_pred hC
Confidence 43
No 201
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.00 E-value=1.5e-05 Score=71.42 Aligned_cols=66 Identities=18% Similarity=0.319 Sum_probs=51.4
Q ss_pred hhhhHHHHHHHHhcCCE-EEEEcCCCCCHHHHHHHHHhhc-------CCCCCcEEEecccchhhhHHHHHHHHH
Q 014006 6 ILQYEETIVETVEQNPV-VVVIGETGSGKSTQLSQILHRH-------GYTKSGIIGVTQPRRVAAVSVARRVAQ 71 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~-~ii~apTGsGKT~~~~~~~~~~-------~~~~~~~vl~~~P~~~l~~q~~~~~~~ 71 (432)
+.+.|.+++..+..... .+|.||+|||||+.+..++... ....+.+++++.|+...+.++..++.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 56789999999988887 9999999999996655555544 245677999999999999999988866
No 202
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.97 E-value=2e-05 Score=76.51 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=47.4
Q ss_pred hhhhHHHHHHHHhcC-CEEEEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHH
Q 014006 6 ILQYEETIVETVEQN-PVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV 69 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~-~~~ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~ 69 (432)
+.+.|.+++...... ...+|.||+|+||| |+...+.... .++.+|++..|+.+.+..+.+++
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlv--k~~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLV--KQKKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHH--HcCCeEEEEcCchHHHHHHHHHh
Confidence 457788888877766 67789999999999 5555444433 34679999999999988887763
No 203
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=0.00017 Score=69.30 Aligned_cols=128 Identities=21% Similarity=0.244 Sum_probs=76.4
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhcCC--C-CCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCC
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRHGY--T-KSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSER 94 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~~~--~-~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (432)
..|+.+.++||||+||||++..+...... . ....++..-..|.-+.++...+++.++....
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~---------------- 252 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR---------------- 252 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee----------------
Confidence 45778999999999999887766654311 1 1222333444566677777777777654321
Q ss_pred ceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhh
Q 014006 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (432)
Q Consensus 95 ~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~ 168 (432)
.+.++..+...+. .+.+.+.++||.+- +......+...++.+.........++.+|||...+.+.+.
T Consensus 253 ---~v~~~~dl~~al~---~l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~ 319 (420)
T PRK14721 253 ---SIKDIADLQLMLH---ELRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV 319 (420)
T ss_pred ---cCCCHHHHHHHHH---HhcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH
Confidence 1122333333332 25678899999986 4443344555566664433332467889999877655443
No 204
>PRK04296 thymidine kinase; Provisional
Probab=97.96 E-value=4.3e-05 Score=65.96 Aligned_cols=109 Identities=20% Similarity=0.240 Sum_probs=58.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccc---hhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCce
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR---RVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~---~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (432)
|...++.||+|+|||+.+..++..... .+.+++++.|. +..... +...++.... .
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~-~g~~v~i~k~~~d~~~~~~~----i~~~lg~~~~-----------------~ 59 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE-RGMKVLVFKPAIDDRYGEGK----VVSRIGLSRE-----------------A 59 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH-cCCeEEEEeccccccccCCc----EecCCCCccc-----------------c
Confidence 557789999999999887777665543 35577766552 221111 1111111100 0
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
+.+.....+.+.+.. .-.++++|||||+| .++.+.+..+++.+ .+.+..+++..
T Consensus 60 ~~~~~~~~~~~~~~~--~~~~~dvviIDEaq--~l~~~~v~~l~~~l---~~~g~~vi~tg 113 (190)
T PRK04296 60 IPVSSDTDIFELIEE--EGEKIDCVLIDEAQ--FLDKEQVVQLAEVL---DDLGIPVICYG 113 (190)
T ss_pred eEeCChHHHHHHHHh--hCCCCCEEEEEccc--cCCHHHHHHHHHHH---HHcCCeEEEEe
Confidence 122345555555543 34578999999998 45554444433333 23334455443
No 205
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.95 E-value=0.00014 Score=75.65 Aligned_cols=68 Identities=16% Similarity=0.097 Sum_probs=49.0
Q ss_pred CCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccCh
Q 014006 93 ERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (432)
Q Consensus 93 ~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~ 162 (432)
....|+++||..+..-++.+. .+.+++.+|||||| +... .+....+-++.+...+..-+.+|||.+..
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ah-r~~~-~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRAD-RIIE-SSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecc-cccc-cccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 345799999998887766554 89999999999999 5543 34444444555444444779999999853
No 206
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.95 E-value=0.00012 Score=62.06 Aligned_cols=124 Identities=22% Similarity=0.225 Sum_probs=70.7
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccc------hhhhHHHHHHHHHHhCCccCCeeeeeeeeccc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR------RVAAVSVARRVAQELGVRLGEEVGYAIRFEDR 90 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~------~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~ 90 (432)
+.+|+.+.+.||+||||||++..++. ..+...+.-... .....| ..+.+.++... .
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q--~~~l~~~~L~~------------~ 79 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQ--LQFLIDVGLGY------------L 79 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhH--HHHHHHcCCCc------------c
Confidence 56899999999999999999887642 112211111100 000111 11222222110 0
Q ss_pred CCCCceEEEcCHHHHHHHHhcCCCCCC--CcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 91 TSERTLIKYLTDGVLLREILSNPDLSP--YSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 91 ~~~~~~i~v~T~~~l~~~l~~~~~l~~--~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.....+.-.+.|...+..+....+.+ .+++++||.- ..+|......+.+.+......+.-+|+.|..+
T Consensus 80 -~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~ 149 (176)
T cd03238 80 -TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPS-TGLHQQDINQLLEVIKGLIDLGNTVILIEHNL 149 (176)
T ss_pred -ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 01112223567777766666666777 8999999998 78888887776666655443345566665544
No 207
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.94 E-value=1.1e-05 Score=70.14 Aligned_cols=142 Identities=17% Similarity=0.056 Sum_probs=72.0
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhh----------------HHHHHHHHHHhCCc-cCC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA----------------VSVARRVAQELGVR-LGE 79 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~----------------~q~~~~~~~~~~~~-~~~ 79 (432)
+.+|+.+.+.|++||||||++..++.......|...+--.+..... ..+.+.+.-..... ...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~ 102 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAE 102 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccHH
Confidence 4689999999999999999999888876554443222111110000 00000000000000 000
Q ss_pred eeeee-eeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q 014006 80 EVGYA-IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (432)
Q Consensus 80 ~~g~~-~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SA 158 (432)
.+... ....-....+..+--.+.|...+..+....+.+.+++++||.. ..+|......+.+.+......+.-+++.|.
T Consensus 103 ~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 181 (195)
T PRK13541 103 TLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVE-TNLSKENRDLLNNLIVMKANSGGIVLLSSH 181 (195)
T ss_pred HHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 00000 0000000001122234666666666666667788999999998 789988876655555433223344555554
Q ss_pred c
Q 014006 159 T 159 (432)
Q Consensus 159 T 159 (432)
-
T Consensus 182 ~ 182 (195)
T PRK13541 182 L 182 (195)
T ss_pred C
Confidence 3
No 208
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.94 E-value=5.6e-05 Score=78.83 Aligned_cols=47 Identities=15% Similarity=0.069 Sum_probs=35.3
Q ss_pred CEEEEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHHHHH
Q 014006 21 PVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVAR 67 (432)
Q Consensus 21 ~~~ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~ 67 (432)
.++.+.++|||||| +++..+.......+-.+.++++|+.+.-..+.+
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~ 107 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRN 107 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 47899999999999 666666665555556789999999776555543
No 209
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.94 E-value=6.1e-05 Score=64.23 Aligned_cols=145 Identities=21% Similarity=0.281 Sum_probs=83.3
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccc--hhhhHHHHHH---HHHHhCCccCCeeeeeeee---
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR--RVAAVSVARR---VAQELGVRLGEEVGYAIRF--- 87 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~--~~l~~q~~~~---~~~~~~~~~~~~~g~~~~~--- 87 (432)
.+.+|+.++|+||.||||||++.-+........|...+--... +.-..++-++ +.+.|+.....++......
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 4678999999999999999999887776555554433322111 1111111111 1233332222222110000
Q ss_pred --------ccc---------C--CCCceE--EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhh
Q 014006 88 --------EDR---------T--SERTLI--KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (432)
Q Consensus 88 --------~~~---------~--~~~~~i--~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~ 146 (432)
+.. . ..+.+- .-.+-|+-.+..+.+...-+..++.+||.- ..+|++...+++.-+...
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPT-SALDPElv~EVL~vm~~L 182 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPT-SALDPELVGEVLDVMKDL 182 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCc-ccCCHHHHHHHHHHHHHH
Confidence 000 0 000000 013455666666666667788999999998 789999999988888777
Q ss_pred hcCCcEEEEEecccC
Q 014006 147 RASKLKILITSATLD 161 (432)
Q Consensus 147 ~~~~~~ii~~SAT~~ 161 (432)
...+.-.++.|.-+.
T Consensus 183 A~eGmTMivVTHEM~ 197 (240)
T COG1126 183 AEEGMTMIIVTHEMG 197 (240)
T ss_pred HHcCCeEEEEechhH
Confidence 766667777776553
No 210
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.93 E-value=8.4e-05 Score=62.74 Aligned_cols=117 Identities=17% Similarity=0.182 Sum_probs=71.1
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEE-------EecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-------GVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED 89 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~v-------l~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~ 89 (432)
+.+|+.+.+.||+||||||++..+........|... .++.+...+. ...+.+.... +
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~---~~tv~~nl~~------~------- 87 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP---LGTLREQLIY------P------- 87 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccc---cccHHHHhhc------c-------
Confidence 568999999999999999999988887655444221 1111111100 0001111000 0
Q ss_pred cCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 90 RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 90 ~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
...-.+.|...+..+....+.+.+++++||.- ..+|.+....+.+.+... +..+|+.|.-
T Consensus 88 ------~~~~LS~G~~~rv~laral~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~---~~tiiivsh~ 147 (166)
T cd03223 88 ------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT-SALDEESEDRLYQLLKEL---GITVISVGHR 147 (166)
T ss_pred ------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc-cccCHHHHHHHHHHHHHh---CCEEEEEeCC
Confidence 11235677777777666677889999999987 788888777655555433 2446665554
No 211
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.93 E-value=3.9e-05 Score=67.24 Aligned_cols=142 Identities=16% Similarity=0.139 Sum_probs=74.7
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHH-------------------HHHHHH---HHhC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS-------------------VARRVA---QELG 74 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q-------------------~~~~~~---~~~~ 74 (432)
+.+|+.+.+.||+||||||++..+........|...+--.+....... +.+.+. ...+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~ 103 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG 103 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC
Confidence 568999999999999999999988887655444322211111100000 000000 0000
Q ss_pred CccCCeee-eeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEE
Q 014006 75 VRLGEEVG-YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (432)
Q Consensus 75 ~~~~~~~g-~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~i 153 (432)
......+. .-....-....+..+.-.+.|...+..+....+.+.+++++||.. ..+|......+.+.+......+..+
T Consensus 104 ~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~ti 182 (204)
T PRK13538 104 PGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF-TAIDKQGVARLEALLAQHAEQGGMV 182 (204)
T ss_pred ccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 00000000 000000000011223335667666666666678889999999998 7899888777666555543333556
Q ss_pred EEEecc
Q 014006 154 LITSAT 159 (432)
Q Consensus 154 i~~SAT 159 (432)
|+.|.-
T Consensus 183 ii~sh~ 188 (204)
T PRK13538 183 ILTTHQ 188 (204)
T ss_pred EEEecC
Confidence 666543
No 212
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.93 E-value=4.9e-05 Score=66.23 Aligned_cols=59 Identities=27% Similarity=0.171 Sum_probs=41.6
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
.+.|...+..+....+.+.+++++||.. ..+|......+.+.+......+..+|+.|.-
T Consensus 128 LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~ 186 (198)
T TIGR01189 128 LSAGQQRRLALARLWLSRAPLWILDEPT-TALDKAGVALLAGLLRAHLARGGIVLLTTHQ 186 (198)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 5667766666666678889999999998 7888888777666665543334556666653
No 213
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.93 E-value=0.00015 Score=75.53 Aligned_cols=122 Identities=20% Similarity=0.199 Sum_probs=78.9
Q ss_pred CchhhhHHHHHHHHhc-CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeee
Q 014006 4 LPILQYEETIVETVEQ-NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~-~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g 82 (432)
+.+..-|.+++..+.. ++.++|+|+.|+|||+++..+..... ..+..++.+.||-..+..+.+ ..+...
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~-~~g~~V~~~ApTg~Aa~~L~~----~~g~~a----- 420 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWE-AAGYRVIGAALSGKAAEGLQA----ESGIES----- 420 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHH-hCCCeEEEEeCcHHHHHHHHh----ccCCce-----
Confidence 4567888888888876 57899999999999988877765433 236688889999766654432 222110
Q ss_pred eeeeecccCCCCceEEEcCHHHHHHHHhc-CCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 83 YAIRFEDRTSERTLIKYLTDGVLLREILS-NPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 83 ~~~~~~~~~~~~~~i~v~T~~~l~~~l~~-~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
.|-.++...+.. ...+.+.++|||||+- +++...+..+++.... .+.++|++.
T Consensus 421 -----------------~Ti~~~~~~~~~~~~~~~~~~llIvDEas--Mv~~~~~~~Ll~~~~~---~~~kliLVG 474 (744)
T TIGR02768 421 -----------------RTLASLEYAWANGRDLLSDKDVLVIDEAG--MVGSRQMARVLKEAEE---AGAKVVLVG 474 (744)
T ss_pred -----------------eeHHHHHhhhccCcccCCCCcEEEEECcc--cCCHHHHHHHHHHHHh---cCCEEEEEC
Confidence 122222111111 2246688999999998 7887776665554332 246777776
No 214
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.93 E-value=1.4e-05 Score=70.87 Aligned_cols=150 Identities=22% Similarity=0.219 Sum_probs=76.6
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchh--hhHHHHHHH--------HHHhCCccCCeeeeeee
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV--AAVSVARRV--------AQELGVRLGEEVGYAIR 86 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~--l~~q~~~~~--------~~~~~~~~~~~~g~~~~ 86 (432)
+.+|+.+.+.|+|||||||++..+........|...+--.|+.. ...++.+++ .+.+..++...+.++..
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~ 106 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLE 106 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchh
Confidence 56789999999999999999998888776665544333333321 111111111 00111111000000000
Q ss_pred ecccC-------------------CCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhh
Q 014006 87 FEDRT-------------------SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (432)
Q Consensus 87 ~~~~~-------------------~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~ 147 (432)
..... ..+...--.+-|...+..+......+..++|+||.- .++|..-...+++.+....
T Consensus 107 n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPt-a~LD~~~~~~l~~~l~~L~ 185 (235)
T COG1122 107 NLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPT-AGLDPKGRRELLELLKKLK 185 (235)
T ss_pred hcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCC-CCCCHHHHHHHHHHHHHHH
Confidence 00000 001111222333333333333345568899999998 7899988888777776655
Q ss_pred cC-CcEEEEEecccChHHHHhhc
Q 014006 148 AS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 148 ~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
.. +.-+|+. |.+-+.+..+.
T Consensus 186 ~~~~~tii~~--tHd~~~~~~~a 206 (235)
T COG1122 186 EEGGKTIIIV--THDLELVLEYA 206 (235)
T ss_pred hcCCCeEEEE--eCcHHHHHhhC
Confidence 43 2334444 54555555544
No 215
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.92 E-value=1.8e-05 Score=68.61 Aligned_cols=133 Identities=22% Similarity=0.218 Sum_probs=72.7
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcC--CCCCcEEEe-cccchhhhHHHHHHHHHHhCCccC---Ceeeeeeeeccc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHG--YTKSGIIGV-TQPRRVAAVSVARRVAQELGVRLG---EEVGYAIRFEDR 90 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~--~~~~~~vl~-~~P~~~l~~q~~~~~~~~~~~~~~---~~~g~~~~~~~~ 90 (432)
+.+|+.+.+.||+||||||++..+..... ...| .+.+ -.+.. ..+.+..+.... ...+......-.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G-~i~~~g~~~~-------~~~~~~i~~~~q~~~~~~~~tv~~~l~ 101 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITG-EILINGRPLD-------KNFQRSTGYVEQQDVHSPNLTVREALR 101 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcce-EEEECCEehH-------HHhhhceEEecccCccccCCcHHHHHH
Confidence 56899999999999999999998876532 2333 3332 11111 111111000000 000000000000
Q ss_pred CCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 91 TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 91 ~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.....+ -.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|.-+
T Consensus 102 ~~~~~~--~LSgGe~qrv~la~al~~~p~vlllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~ 168 (192)
T cd03232 102 FSALLR--GLSVEQRKRLTIGVELAAKPSILFLDEPT-SGLDSQAAYNIVRFLKKLADSGQAILCTIHQP 168 (192)
T ss_pred HHHHHh--cCCHHHhHHHHHHHHHhcCCcEEEEeCCC-cCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 000000 35667666666666677889999999998 78998887776666655443345566666543
No 216
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.92 E-value=4.9e-05 Score=72.74 Aligned_cols=119 Identities=23% Similarity=0.333 Sum_probs=76.0
Q ss_pred hhhhHHHHHHHH------hcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHH--HHHHHHHhCCcc
Q 014006 6 ILQYEETIVETV------EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSV--ARRVAQELGVRL 77 (432)
Q Consensus 6 ~~~~q~~i~~~i------~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~--~~~~~~~~~~~~ 77 (432)
+.+-|+++++.+ .++.++.+.|+-|+|||+++..+...... .+..++++.||-..|..+ ...+-..+++..
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~-~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~ 80 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS-RGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPI 80 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc-ccceEEEecchHHHHHhccCCcchHHhcCccc
Confidence 456788888888 88999999999999999988877765543 466899999998887666 223334444332
Q ss_pred CCeeeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 78 GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 78 ~~~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
... ....+ .+.... .....+.+.+++||||+= ++....+..+-+.+..
T Consensus 81 ~~~------------~~~~~---~~~~~~---~~~~~l~~~~~lIiDEis--m~~~~~l~~i~~~lr~ 128 (364)
T PF05970_consen 81 NNN------------EKSQC---KISKNS---RLRERLRKADVLIIDEIS--MVSADMLDAIDRRLRD 128 (364)
T ss_pred ccc------------ccccc---cccccc---hhhhhhhhheeeeccccc--chhHHHHHHHHHhhhh
Confidence 211 00000 110000 011256788999999996 7777766654444433
No 217
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.90 E-value=5e-05 Score=66.32 Aligned_cols=143 Identities=19% Similarity=0.170 Sum_probs=76.5
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHH---HHHhCCccCCeee----ee----e
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEVG----YA----I 85 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~---~~~~~~~~~~~~g----~~----~ 85 (432)
+.+|+.+.+.||+||||||++..+........|...+--.+.........+.+ .+........++. .. .
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~ 103 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSP 103 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCc
Confidence 56899999999999999999998888765554432221222111000000100 0000000000000 00 0
Q ss_pred ---eec------c-cCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEE
Q 014006 86 ---RFE------D-RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (432)
Q Consensus 86 ---~~~------~-~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~ 155 (432)
... . ....+..+.-.+.|...+..+......+.+++++||.- ..+|......+.+.+......+..+|+
T Consensus 104 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii 182 (200)
T PRK13540 104 GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL-VALDELSLLTIITKIQEHRAKGGAVLL 182 (200)
T ss_pred chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC-cccCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 000 0 00001122235677776666666677888999999998 788888877766666554333456666
Q ss_pred Eeccc
Q 014006 156 TSATL 160 (432)
Q Consensus 156 ~SAT~ 160 (432)
.|...
T Consensus 183 ~sh~~ 187 (200)
T PRK13540 183 TSHQD 187 (200)
T ss_pred EeCCc
Confidence 66554
No 218
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.90 E-value=2.7e-05 Score=78.82 Aligned_cols=138 Identities=19% Similarity=0.202 Sum_probs=81.2
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHH-HH---HH---HhCCccCCeeeeee---e
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVAR-RV---AQ---ELGVRLGEEVGYAI---R 86 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~-~~---~~---~~~~~~~~~~g~~~---~ 86 (432)
+.+|+.+.++||+||||||++..++....+..|...+--.+.+.. .+..+ .+ .+ .++.++...+.++. .
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~ 436 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDAT 436 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCC
Confidence 568999999999999999999999887776666544444444443 22211 11 00 00000000000000 0
Q ss_pred ec------------c---cCCCCceE------EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 87 FE------------D---RTSERTLI------KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 87 ~~------------~---~~~~~~~i------~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
.+ + ....+.+- .-.+.|...+..+.+..+.+.+++|+||+- ..+|.+....+.+.+..
T Consensus 437 ~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~T-SaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 437 DEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPT-EHLDAGTESELLEDLLA 515 (529)
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHH
Confidence 00 0 00001111 125678888887777788999999999998 78999888887777766
Q ss_pred hhcCCcEEEEEe
Q 014006 146 LRASKLKILITS 157 (432)
Q Consensus 146 ~~~~~~~ii~~S 157 (432)
..++ .-+|..|
T Consensus 516 ~~~~-~TvIiIt 526 (529)
T TIGR02868 516 ALSG-KTVVVIT 526 (529)
T ss_pred hcCC-CEEEEEe
Confidence 5443 4455554
No 219
>PRK08181 transposase; Validated
Probab=97.87 E-value=0.00023 Score=64.55 Aligned_cols=119 Identities=13% Similarity=0.140 Sum_probs=65.3
Q ss_pred HHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCC
Q 014006 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSER 94 (432)
Q Consensus 15 ~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (432)
+.+.+++++++.||+|+|||.++..+...... .+..++++. ...+..++.. ... .
T Consensus 101 ~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~-~g~~v~f~~-~~~L~~~l~~----a~~-----------------~-- 155 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLAAAIGLALIE-NGWRVLFTR-TTDLVQKLQV----ARR-----------------E-- 155 (269)
T ss_pred HHHhcCceEEEEecCCCcHHHHHHHHHHHHHH-cCCceeeee-HHHHHHHHHH----HHh-----------------C--
Confidence 35568899999999999999777666554432 345666553 2233333321 100 0
Q ss_pred ceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhccC
Q 014006 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSN 171 (432)
Q Consensus 95 ~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~ 171 (432)
.+...++.. +.+++++||||++....+ +.....+-.++..+..+.. +++|.-.+...+...|++
T Consensus 156 -----~~~~~~l~~------l~~~dLLIIDDlg~~~~~-~~~~~~Lf~lin~R~~~~s-~IiTSN~~~~~w~~~~~D 219 (269)
T PRK08181 156 -----LQLESAIAK------LDKFDLLILDDLAYVTKD-QAETSVLFELISARYERRS-ILITANQPFGEWNRVFPD 219 (269)
T ss_pred -----CcHHHHHHH------HhcCCEEEEeccccccCC-HHHHHHHHHHHHHHHhCCC-EEEEcCCCHHHHHHhcCC
Confidence 122223222 346789999999843333 3333334444444333333 455556666666666643
No 220
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=4.6e-05 Score=76.00 Aligned_cols=131 Identities=25% Similarity=0.258 Sum_probs=82.9
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHH-H---HH---HhCCccCCeeeeeeeec
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR-V---AQ---ELGVRLGEEVGYAIRFE 88 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~-~---~~---~~~~~~~~~~g~~~~~~ 88 (432)
.+..|+.+.++||.||||||++..+.....+..|...+--.|.+.+--...++ + .+ .|+-++..++.|+....
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~ 569 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNA 569 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCC
Confidence 46789999999999999999999888888877777777788887765444432 1 11 12222223333332210
Q ss_pred c------------------cCCCCceEEE------cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHH
Q 014006 89 D------------------RTSERTLIKY------LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (432)
Q Consensus 89 ~------------------~~~~~~~i~v------~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~ 144 (432)
. ....+.+-.| .+-|+-.+..+.+..+.+..++|+|||- ..+|.+.-..+-+.+-
T Consensus 570 t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEAT-SALDaeSE~lVq~aL~ 648 (716)
T KOG0058|consen 570 TDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEAT-SALDAESEYLVQEALD 648 (716)
T ss_pred CHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechh-hhcchhhHHHHHHHHH
Confidence 0 0011222333 3556667777777788999999999998 6788777555333333
Q ss_pred hhh
Q 014006 145 NLR 147 (432)
Q Consensus 145 ~~~ 147 (432)
+..
T Consensus 649 ~~~ 651 (716)
T KOG0058|consen 649 RLM 651 (716)
T ss_pred Hhh
Confidence 333
No 221
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=0.0002 Score=70.11 Aligned_cols=127 Identities=20% Similarity=0.314 Sum_probs=69.5
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCC-CCcEE-Ee-cccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYT-KSGII-GV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSE 93 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~-~~~~v-l~-~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 93 (432)
+.+|+.++++||||+||||++..+....... .+.++ ++ .-+.+..+.++.+...+.++..+ .
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v----~----------- 411 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV----H----------- 411 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCcee----E-----------
Confidence 4568899999999999998776666543222 12333 33 33445555544443333322111 0
Q ss_pred CceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHh
Q 014006 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSK 167 (432)
Q Consensus 94 ~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~ 167 (432)
...+++.+...+. .+.+.++|+||.+- +..........+..+..... ...+++++++.....+.+
T Consensus 412 ----~a~d~~~L~~aL~---~l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~-~a~lLVLpAtss~~Dl~e 476 (559)
T PRK12727 412 ----EADSAESLLDLLE---RLRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQ-VTSLLVLPANAHFSDLDE 476 (559)
T ss_pred ----ecCcHHHHHHHHH---HhccCCEEEecCCC-cchhhHHHHHHHHHHHHhhc-CCcEEEEECCCChhHHHH
Confidence 1123445554443 23568999999998 43333333333444433333 256788888876544443
No 222
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.86 E-value=7e-05 Score=65.41 Aligned_cols=141 Identities=20% Similarity=0.205 Sum_probs=74.0
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHH---HHHhCC----ccCCeeeee--eee
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGV----RLGEEVGYA--IRF 87 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~---~~~~~~----~~~~~~g~~--~~~ 87 (432)
+.+|+.+.+.|++||||||++..+........|...+.-.+.........+.+ .+.... ++....... ...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 102 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHS 102 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccccc
Confidence 56899999999999999999998887765544432222111110000000000 000000 000000000 000
Q ss_pred ccc-----------CCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEE
Q 014006 88 EDR-----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (432)
Q Consensus 88 ~~~-----------~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~ 156 (432)
+.. ...+..+.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.
T Consensus 103 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiii~ 181 (201)
T cd03231 103 DEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT-TALDKAGVARFAEAMAGHCARGGMVVLT 181 (201)
T ss_pred HHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 000 0011223335677776666666677888999999998 7899888777666665543333445555
Q ss_pred ec
Q 014006 157 SA 158 (432)
Q Consensus 157 SA 158 (432)
|.
T Consensus 182 sH 183 (201)
T cd03231 182 TH 183 (201)
T ss_pred ec
Confidence 44
No 223
>PRK06526 transposase; Provisional
Probab=97.86 E-value=0.00011 Score=66.16 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=28.1
Q ss_pred HHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEec
Q 014006 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (432)
Q Consensus 15 ~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~ 55 (432)
+.+..++++++.||+|+|||.++..+..... ..+.++++.
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~-~~g~~v~f~ 132 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRAC-QAGHRVLFA 132 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHH-HCCCchhhh
Confidence 4456788999999999999977766655443 234455554
No 224
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.85 E-value=0.00021 Score=62.30 Aligned_cols=136 Identities=21% Similarity=0.188 Sum_probs=77.4
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhc--CCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeee--------
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRH--GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIR-------- 86 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~--~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~-------- 86 (432)
+.+|+.+.+.|++||||||++..+.... ....|...+.-.+......+. +... .+++...
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~--~~~~--------~i~~v~q~~~~~~~~ 92 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE--RARL--------GIFLAFQYPPEIPGV 92 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHH--HhhC--------cEEEeecChhhccCc
Confidence 5689999999999999999999888763 333343333233332221111 0000 0111000
Q ss_pred -ecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHH
Q 014006 87 -FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKV 165 (432)
Q Consensus 87 -~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~ 165 (432)
..... .....-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|. +.+..
T Consensus 93 ~~~~~l--~~~~~~LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~L~~~~~~~~tiii~sh--~~~~~ 167 (200)
T cd03217 93 KNADFL--RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPD-SGLDIDALRLVAEVINKLREEGKSVLIITH--YQRLL 167 (200)
T ss_pred cHHHHH--hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHCCCEEEEEec--CHHHH
Confidence 00000 0011236778777777777778889999999998 788888877766666554433344555444 33344
Q ss_pred Hh
Q 014006 166 SK 167 (432)
Q Consensus 166 ~~ 167 (432)
.+
T Consensus 168 ~~ 169 (200)
T cd03217 168 DY 169 (200)
T ss_pred HH
Confidence 44
No 225
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.84 E-value=0.00017 Score=63.82 Aligned_cols=68 Identities=13% Similarity=0.245 Sum_probs=45.3
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.|. +.+.+..+.
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~vsH--~~~~~~~~~ 205 (216)
T TIGR00960 138 QLSGGEQQRVAIARAIVHKPPLLLADEPT-GNLDPELSRDIMRLFEEFNRRGTTVLVATH--DINLVETYR 205 (216)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHhC
Confidence 35667777776666678889999999998 789988877766666554333344555554 444444443
No 226
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.84 E-value=0.00011 Score=64.83 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=45.1
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|. +.+.+..+.
T Consensus 137 ~LS~G~~qrl~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~tH--~~~~~~~~~ 204 (214)
T TIGR02673 137 QLSGGEQQRVAIARAIVNSPPLLLADEPT-GNLDPDLSERILDLLKRLNKRGTTVIVATH--DLSLVDRVA 204 (214)
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHhc
Confidence 35677777666666667888999999998 789998877766666554333345555554 434444443
No 227
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.84 E-value=6.9e-05 Score=66.68 Aligned_cols=150 Identities=19% Similarity=0.166 Sum_probs=78.1
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcE--------------EEecccchhhh--HHHHHHHH---HHhCCcc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI--------------IGVTQPRRVAA--VSVARRVA---QELGVRL 77 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~--------------vl~~~P~~~l~--~q~~~~~~---~~~~~~~ 77 (432)
+.+|+.+.|.||+||||||++..+........|.. +.++.+...+- ....+.+. ...+...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~ 102 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPD 102 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCH
Confidence 56899999999999999999998887765443321 11111110000 01111110 1111000
Q ss_pred CCeeeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 78 GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 78 ~~~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
......-....-.......+.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|
T Consensus 103 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~L~~~~~~~~tiii~s 181 (223)
T TIGR03740 103 SRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT-NGLDPIGIQELRELIRSFPEQGITVILSS 181 (223)
T ss_pred HHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 00000000000000011222335777777776666677889999999998 78998887776666655433334455554
Q ss_pred cccChHHHHhhc
Q 014006 158 ATLDGEKVSKFF 169 (432)
Q Consensus 158 AT~~~~~~~~~~ 169 (432)
. +.+.+..+.
T Consensus 182 H--~~~~~~~~~ 191 (223)
T TIGR03740 182 H--ILSEVQQLA 191 (223)
T ss_pred C--CHHHHHHhc
Confidence 4 444444443
No 228
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.83 E-value=7.7e-05 Score=65.49 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=42.0
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|.-.
T Consensus 127 ~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 187 (207)
T PRK13539 127 YLSAGQKRRVALARLLVSNRPIWILDEPT-AALDAAAVALFAELIRAHLAQGGIVIAATHIP 187 (207)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35677776666666677889999999998 78998887776665554433335566665543
No 229
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.83 E-value=0.00024 Score=61.69 Aligned_cols=142 Identities=23% Similarity=0.315 Sum_probs=85.3
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhC-----------CccCCeeeeee
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG-----------VRLGEEVGYAI 85 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~-----------~~~~~~~g~~~ 85 (432)
+.+|+.+.|.||.|||||+++..++....+..|...+.-.....+...-...+.+..| .++..++++..
T Consensus 31 V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafpl 110 (263)
T COG1127 31 VPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPL 110 (263)
T ss_pred ecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheeh
Confidence 5689999999999999999999999999888887777777766665543333433333 22333333322
Q ss_pred eecccCCC----------------CceEEE-----cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCC---HHHHHHHHH
Q 014006 86 RFEDRTSE----------------RTLIKY-----LTDGVLLREILSNPDLSPYSVIILDEAHERSLN---TDILLGLVK 141 (432)
Q Consensus 86 ~~~~~~~~----------------~~~i~v-----~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~---~~~~~~~l~ 141 (432)
+....... +..+.- .+-|+..+..+.+....+..++++||.. ..+| +..+..+++
T Consensus 111 re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPt-sGLDPI~a~~~~~LI~ 189 (263)
T COG1127 111 REHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPT-SGLDPISAGVIDELIR 189 (263)
T ss_pred HhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCC-CCCCcchHHHHHHHHH
Confidence 22111110 000000 2334444444444445567899999987 4554 445666666
Q ss_pred HHHhhhcCCcEEEEEecccC
Q 014006 142 RLVNLRASKLKILITSATLD 161 (432)
Q Consensus 142 ~~~~~~~~~~~ii~~SAT~~ 161 (432)
.+.... +.-+++.|.-++
T Consensus 190 ~L~~~l--g~T~i~VTHDl~ 207 (263)
T COG1127 190 ELNDAL--GLTVIMVTHDLD 207 (263)
T ss_pred HHHHhh--CCEEEEEECChH
Confidence 666554 356677766554
No 230
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.82 E-value=0.00011 Score=64.45 Aligned_cols=149 Identities=17% Similarity=0.152 Sum_probs=77.0
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccc--------------h---hh-hHHHHHHHHHHhCCccC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR--------------R---VA-AVSVARRVAQELGVRLG 78 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~--------------~---~l-~~q~~~~~~~~~~~~~~ 78 (432)
+.+|+.+.|.||+||||||++..+........|...+--.+. . .+ ...+.+.+.-.... .+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~-~~ 101 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKE-LD 101 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhh-cC
Confidence 568999999999999999999988887654444222111111 0 00 00011111000000 00
Q ss_pred Ce---eee-eeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEE
Q 014006 79 EE---VGY-AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (432)
Q Consensus 79 ~~---~g~-~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii 154 (432)
.. +.. -....-....+..+--.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii 180 (205)
T cd03226 102 AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT-SGLDYKNMERVGELIRELAAQGKAVI 180 (205)
T ss_pred ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 00 000 00000000011223345677777666666667788999999998 78998887776665555433334455
Q ss_pred EEecccChHHHHhhc
Q 014006 155 ITSATLDGEKVSKFF 169 (432)
Q Consensus 155 ~~SAT~~~~~~~~~~ 169 (432)
+.|. +.+.+..+.
T Consensus 181 ~~sH--~~~~~~~~~ 193 (205)
T cd03226 181 VITH--DYEFLAKVC 193 (205)
T ss_pred EEeC--CHHHHHHhC
Confidence 5554 333344443
No 231
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.81 E-value=4.9e-05 Score=70.12 Aligned_cols=65 Identities=6% Similarity=0.043 Sum_probs=44.8
Q ss_pred hhhhHHH----HHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhcCCC---CCcEEEecccchhhhHHHHHHHH
Q 014006 6 ILQYEET----IVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYT---KSGIIGVTQPRRVAAVSVARRVA 70 (432)
Q Consensus 6 ~~~~q~~----i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~~~~---~~~~vl~~~P~~~l~~q~~~~~~ 70 (432)
-++.|.+ +.+.+.+|+++++.||||+||| ++++.+....... .+.++++..+|..+..+....+.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 3677777 6667788999999999999999 4444433322211 12378888899888766655543
No 232
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.81 E-value=4.9e-05 Score=70.12 Aligned_cols=65 Identities=6% Similarity=0.043 Sum_probs=44.8
Q ss_pred hhhhHHH----HHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhcCCC---CCcEEEecccchhhhHHHHHHHH
Q 014006 6 ILQYEET----IVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYT---KSGIIGVTQPRRVAAVSVARRVA 70 (432)
Q Consensus 6 ~~~~q~~----i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~~~~---~~~~vl~~~P~~~l~~q~~~~~~ 70 (432)
-++.|.+ +.+.+.+|+++++.||||+||| ++++.+....... .+.++++..+|..+..+....+.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 3677777 6667788999999999999999 4444433322211 12378888899888766655543
No 233
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.81 E-value=9.7e-05 Score=66.60 Aligned_cols=136 Identities=13% Similarity=0.165 Sum_probs=76.1
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCc------EEEecccch-----hhhHHHHHHHHHHhCCc------cCC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG------IIGVTQPRR-----VAAVSVARRVAQELGVR------LGE 79 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~------~vl~~~P~~-----~l~~q~~~~~~~~~~~~------~~~ 79 (432)
+.+|+.+.|.||+||||||++..+........|. .+.++.... ..+.+............ ...
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~ 101 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAK 101 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHH
Confidence 4578999999999999999999888876554432 222221110 01112111110000000 000
Q ss_pred eeeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEec
Q 014006 80 EVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSA 158 (432)
Q Consensus 80 ~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SA 158 (432)
..| .. ...+..+--.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +.-+|+.|.
T Consensus 102 ~l~----l~--~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 174 (246)
T cd03237 102 PLQ----IE--QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPS-AYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174 (246)
T ss_pred HcC----CH--HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 000 00 0011233346788888777777778889999999998 788888877766655554332 344555554
Q ss_pred c
Q 014006 159 T 159 (432)
Q Consensus 159 T 159 (432)
-
T Consensus 175 d 175 (246)
T cd03237 175 D 175 (246)
T ss_pred C
Confidence 3
No 234
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.81 E-value=0.00051 Score=62.27 Aligned_cols=125 Identities=17% Similarity=0.269 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEE-ec-ccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceE
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-VT-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl-~~-~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 97 (432)
++.+.+.|++|+|||+++..+...... .+.++. +. -+.+..+.++.+..++..+. .+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~-~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~--------------------~~ 133 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTVQQLQDYVKTIGF--------------------EV 133 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHHhhhcCc--------------------eE
Confidence 478899999999999877766655432 233333 32 24443333332323222221 11
Q ss_pred EE-cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCC-CCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHh
Q 014006 98 KY-LTDGVLLREILSNPDLSPYSVIILDEAHERS-LNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSK 167 (432)
Q Consensus 98 ~v-~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~-~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~ 167 (432)
.. .++..+...+..-....++++++||.+- +. .+...+.+ +..+.........++.+|||...+...+
T Consensus 134 ~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~G-r~~~~~~~l~e-l~~~~~~~~~~~~~LVl~a~~~~~d~~~ 203 (270)
T PRK06731 134 IAVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEE-MIETMGQVEPDYICLTLSASMKSKDMIE 203 (270)
T ss_pred EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCcCCHHHHHH-HHHHHhhhCCCeEEEEEcCccCHHHHHH
Confidence 11 2455555444221123568999999997 44 34555555 4444443323245778999986655433
No 235
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.80 E-value=6.2e-05 Score=70.20 Aligned_cols=150 Identities=19% Similarity=0.176 Sum_probs=79.1
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHH---HHHhCCccCCee-----------e
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEV-----------G 82 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~---~~~~~~~~~~~~-----------g 82 (432)
+.+|+.+.+.||+||||||++..+........|...+.-.+......+..+.+ .+........++ |
T Consensus 16 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 95 (302)
T TIGR01188 16 VREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYG 95 (302)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcC
Confidence 56899999999999999999998888765554432221111100000000000 000000000000 0
Q ss_pred eeee------------ecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCC
Q 014006 83 YAIR------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (432)
Q Consensus 83 ~~~~------------~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~ 150 (432)
.... ..-....+..+--.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+......+
T Consensus 96 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~~~~~g 174 (302)
T TIGR01188 96 LPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT-TGLDPRTRRAIWDYIRALKEEG 174 (302)
T ss_pred CCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCC
Confidence 0000 00000012233345677777766666678889999999998 7899988777666665544333
Q ss_pred cEEEEEecccChHHHHhhc
Q 014006 151 LKILITSATLDGEKVSKFF 169 (432)
Q Consensus 151 ~~ii~~SAT~~~~~~~~~~ 169 (432)
.-+|+.|.- .+.+.++.
T Consensus 175 ~tvi~~sH~--~~~~~~~~ 191 (302)
T TIGR01188 175 VTILLTTHY--MEEADKLC 191 (302)
T ss_pred CEEEEECCC--HHHHHHhC
Confidence 455555543 33344443
No 236
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.80 E-value=5.6e-05 Score=70.52 Aligned_cols=142 Identities=20% Similarity=0.186 Sum_probs=77.3
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchh----------------------hhHHHHHHHHHHhC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV----------------------AAVSVARRVAQELG 74 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~----------------------l~~q~~~~~~~~~~ 74 (432)
+.+|+.+.+.||+||||||++..+........|...+.-.+... -+.+....++...+
T Consensus 30 i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (306)
T PRK13537 30 VQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG 109 (306)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC
Confidence 56899999999999999999999988766554432221111110 01111111111111
Q ss_pred CccCC---ee-eeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCC
Q 014006 75 VRLGE---EV-GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (432)
Q Consensus 75 ~~~~~---~~-g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~ 150 (432)
..... .+ ..-....-....+..+--.+.|+..+..+....+.+.+++++||.- ..+|......+...+......+
T Consensus 110 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt-~gLD~~~~~~l~~~l~~l~~~g 188 (306)
T PRK13537 110 LSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT-TGLDPQARHLMWERLRSLLARG 188 (306)
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCC
Confidence 00000 00 0000000000112233346777777777666678889999999998 7899988777666665544333
Q ss_pred cEEEEEecc
Q 014006 151 LKILITSAT 159 (432)
Q Consensus 151 ~~ii~~SAT 159 (432)
..+++.|.-
T Consensus 189 ~till~sH~ 197 (306)
T PRK13537 189 KTILLTTHF 197 (306)
T ss_pred CEEEEECCC
Confidence 445555443
No 237
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.79 E-value=2.8e-05 Score=68.46 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=43.9
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhh
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~ 168 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+.-+++.|. +.+.+..+
T Consensus 128 ~LS~G~~qrl~la~al~~~p~~lllDEP~-~~LD~~~~~~~~~~l~~~~~~~~tii~~sH--~~~~~~~~ 194 (210)
T cd03269 128 ELSKGNQQKVQFIAAVIHDPELLILDEPF-SGLDPVNVELLKDVIRELARAGKTVILSTH--QMELVEEL 194 (210)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEECC--CHHHHHHh
Confidence 35677777666666677788999999998 789988877766666554433344555444 43434443
No 238
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.79 E-value=0.00018 Score=64.53 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=45.2
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +.-+|+.|. +.+.+..+.
T Consensus 140 ~LS~G~~qrv~la~al~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH--~~~~~~~~~ 208 (233)
T cd03258 140 QLSGGQKQRVGIARALANNPKVLLCDEAT-SALDPETTQSILALLRDINRELGLTIVLITH--EMEVVKRIC 208 (233)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCC-CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHhC
Confidence 35677777776666677889999999998 789988877766666554332 344555554 444444444
No 239
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.79 E-value=0.00044 Score=61.48 Aligned_cols=68 Identities=21% Similarity=0.209 Sum_probs=45.9
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+.....++..+|+.|.- .+.+.++.
T Consensus 113 ~LS~G~~qrv~laral~~~p~llilDEP~-~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~--~~~~~~~~ 180 (223)
T TIGR03771 113 ELSGGQRQRVLVARALATRPSVLLLDEPF-TGLDMPTQELLTELFIELAGAGTAILMTTHD--LAQAMATC 180 (223)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC--HHHHHHhC
Confidence 35677777766666678889999999998 7888888777666665544334456666554 33344443
No 240
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.79 E-value=0.00011 Score=64.07 Aligned_cols=149 Identities=19% Similarity=0.211 Sum_probs=80.8
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHH--------HHHhCCccCCee-------
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV--------AQELGVRLGEEV------- 81 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~--------~~~~~~~~~~~~------- 81 (432)
+.+|+.+.|.||+||||||++..+-....+..|...+.-.....+-......+ .+.++.-...++
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lp 107 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELP 107 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhH
Confidence 57899999999999999999987777666655444443322222221111111 122221111111
Q ss_pred ----eeeeee-c-------cc--CC---CCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHH
Q 014006 82 ----GYAIRF-E-------DR--TS---ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (432)
Q Consensus 82 ----g~~~~~-~-------~~--~~---~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~ 144 (432)
+..... . .. .. .+...--.+-|.-.+....+....+..+|+.||.- -.+|.+.-..++..+.
T Consensus 108 l~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPT-gnLD~~t~~~V~~ll~ 186 (226)
T COG1136 108 LLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPT-GNLDSKTAKEVLELLR 186 (226)
T ss_pred HHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCcc-ccCChHHHHHHHHHHH
Confidence 000000 0 00 00 00112234666667777766678889999999987 5788887777666666
Q ss_pred hhhcC-CcEEEEEecccChHHHHhhc
Q 014006 145 NLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 145 ~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
..... +.-+|+. |.++. ++.+.
T Consensus 187 ~~~~~~g~tii~V--THd~~-lA~~~ 209 (226)
T COG1136 187 ELNKERGKTIIMV--THDPE-LAKYA 209 (226)
T ss_pred HHHHhcCCEEEEE--cCCHH-HHHhC
Confidence 65433 2344444 55544 44443
No 241
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=97.78 E-value=1.7e-05 Score=59.75 Aligned_cols=31 Identities=39% Similarity=0.665 Sum_probs=29.7
Q ss_pred HHHHHHHccCCCCCCCCCHHHHHhhcCCCCC
Q 014006 400 ALKQLYLIDAIDENGSITSIGRTMAGTSFFA 430 (432)
Q Consensus 400 ~~~~L~~~g~i~~~~~~t~lG~~~~~l~~~~ 430 (432)
|++.|..+||||.+|++|++|+.|++||++|
T Consensus 2 A~~~L~~LgAld~~~~lT~lG~~m~~lPl~P 32 (92)
T smart00847 2 ALELLYELGALDDDGRLTPLGRKMAELPLDP 32 (92)
T ss_pred HHHHHHHCCCcCCCCCcCHHHHHHHHCCCCh
Confidence 7899999999999999999999999999987
No 242
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=97.78 E-value=1.5e-05 Score=61.17 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=26.0
Q ss_pred HHHHHHHHccCCCCCCCCCHHHHHhhcCCCCC
Q 014006 399 DALKQLYLIDAIDENGSITSIGRTMAGTSFFA 430 (432)
Q Consensus 399 ~~~~~L~~~g~i~~~~~~t~lG~~~~~l~~~~ 430 (432)
+|++.|+.+|+||++|++|++|+.|++||++|
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p 32 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDP 32 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-H
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCch
Confidence 47899999999999999999999999999986
No 243
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.77 E-value=7.2e-05 Score=67.71 Aligned_cols=150 Identities=20% Similarity=0.251 Sum_probs=78.1
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCc-------EEEecccchhhhHHHHHHHHHHhCCccCCeee---eee-
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-------IIGVTQPRRVAAVSVARRVAQELGVRLGEEVG---YAI- 85 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~-------~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g---~~~- 85 (432)
+.+|+.+.|.||+||||||++..+........|. .+.++.....+.......+........+.... ...
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 106 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALK 106 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHH
Confidence 5689999999999999999999888776544332 12222111111000000011110000000000 000
Q ss_pred eecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHH
Q 014006 86 RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEK 164 (432)
Q Consensus 86 ~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~ 164 (432)
...-.......+.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|. +.+.
T Consensus 107 ~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH--~~~~ 183 (251)
T PRK09544 107 RVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPT-QGVDVNGQVALYDLIDQLRRELDCAVLMVSH--DLHL 183 (251)
T ss_pred HcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHhcCCEEEEEec--CHHH
Confidence 000000011233446777777777666677888999999998 789988877766555544332 345555554 4344
Q ss_pred HHhhc
Q 014006 165 VSKFF 169 (432)
Q Consensus 165 ~~~~~ 169 (432)
+.++.
T Consensus 184 i~~~~ 188 (251)
T PRK09544 184 VMAKT 188 (251)
T ss_pred HHHhC
Confidence 44444
No 244
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.76 E-value=0.0002 Score=64.83 Aligned_cols=139 Identities=17% Similarity=0.080 Sum_probs=78.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEEEc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKYL 100 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~ 100 (432)
.-.++-=.||.||--++..++...-..+..+.+++...-.|-.+..+.+...-........-..........-+..|+++
T Consensus 63 ~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~~~~~~~~~~~~~GvlF~ 142 (303)
T PF13872_consen 63 AGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGADNIPVHPLNKFKYGDIIRLKEGVLFS 142 (303)
T ss_pred cEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCCCcccceechhhccCcCCCCCCCccch
Confidence 34555568999999555555554433444567877777788777777665433221111110011111112235579999
Q ss_pred CHHHHHHHHhcC----CC-------C--CCCcEEEEeCCCcCCCCHH-------HHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 101 TDGVLLREILSN----PD-------L--SPYSVIILDEAHERSLNTD-------ILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 101 T~~~l~~~l~~~----~~-------l--~~~~~vViDE~h~~~~~~~-------~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
|+..|....... .. + .-=.+||+||+|. .-+.. -.......+....|+ .+++-+|||-
T Consensus 143 TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~-akn~~~~~~~~sk~g~avl~LQ~~LP~-ARvvY~SATg 220 (303)
T PF13872_consen 143 TYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHK-AKNLSSGSKKPSKTGIAVLELQNRLPN-ARVVYASATG 220 (303)
T ss_pred hHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchh-cCCCCccCccccHHHHHHHHHHHhCCC-CcEEEecccc
Confidence 998877664221 11 1 1124999999995 32221 122224455566665 8899999997
Q ss_pred C
Q 014006 161 D 161 (432)
Q Consensus 161 ~ 161 (432)
-
T Consensus 221 a 221 (303)
T PF13872_consen 221 A 221 (303)
T ss_pred c
Confidence 3
No 245
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.76 E-value=0.00015 Score=63.94 Aligned_cols=141 Identities=21% Similarity=0.162 Sum_probs=74.1
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEE---------------Eecccchhhh--HHHHHHHH---HHhCCc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII---------------GVTQPRRVAA--VSVARRVA---QELGVR 76 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~v---------------l~~~P~~~l~--~q~~~~~~---~~~~~~ 76 (432)
+.+|+.+.+.||+||||||++..+........|... .++.....+. ....+.+. ...+..
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~ 113 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRR 113 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCc
Confidence 568999999999999999999988887654443221 1111110000 00111110 000000
Q ss_pred cCCeee-eeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEE
Q 014006 77 LGEEVG-YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (432)
Q Consensus 77 ~~~~~g-~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~ 155 (432)
...... ......-....+..+.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+
T Consensus 114 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tiii 192 (214)
T PRK13543 114 AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY-ANLDLEGITLVNRMISAHLRGGGAALV 192 (214)
T ss_pred HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 000000 000000000012233446777777777666678889999999998 788888877655555444333345555
Q ss_pred Eec
Q 014006 156 TSA 158 (432)
Q Consensus 156 ~SA 158 (432)
.|.
T Consensus 193 ~sH 195 (214)
T PRK13543 193 TTH 195 (214)
T ss_pred Eec
Confidence 544
No 246
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.76 E-value=0.00076 Score=60.29 Aligned_cols=115 Identities=16% Similarity=0.254 Sum_probs=65.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEEEc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKYL 100 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~ 100 (432)
..+++.|++|+|||.++..++..... .+..++++. +.++...+...+. . .. .
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~-~g~~v~~it-----~~~l~~~l~~~~~-~---------------~~------~ 151 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL-RGKSVLIIT-----VADIMSAMKDTFS-N---------------SE------T 151 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEE-----HHHHHHHHHHHHh-h---------------cc------c
Confidence 47899999999999877777665543 345666552 2233333322221 0 00 1
Q ss_pred CHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhcc
Q 014006 101 TDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS 170 (432)
Q Consensus 101 T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~ 170 (432)
+.+.+++. +.+++++||||++.. ...++...++..++..+-.+.+-+++|.-++.+.+.+.++
T Consensus 152 ~~~~~l~~------l~~~dlLvIDDig~~-~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g 214 (244)
T PRK07952 152 SEEQLLND------LSNVDLLVIDEIGVQ-TESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLG 214 (244)
T ss_pred cHHHHHHH------hccCCEEEEeCCCCC-CCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhC
Confidence 23333332 456889999999953 3556666666666665533223344444666666666554
No 247
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.76 E-value=0.00037 Score=74.00 Aligned_cols=122 Identities=19% Similarity=0.179 Sum_probs=77.5
Q ss_pred CchhhhHHHHHHHHhc-CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeee
Q 014006 4 LPILQYEETIVETVEQ-NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~-~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g 82 (432)
+.+..-|.+++..+.. ++.++++|+.|+||||++..+..... ..+.+++.+.||-..+..+.. ..+..
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e-~~G~~V~~~ApTGkAA~~L~e----~tGi~------ 413 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWE-AAGYEVRGAALSGIAAENLEG----GSGIA------ 413 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEecCcHHHHHHHhh----ccCcc------
Confidence 4577888889988877 45789999999999987765544322 236688889999776644432 11110
Q ss_pred eeeeecccCCCCceEEEcCHHHHHHHHh-cCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 83 YAIRFEDRTSERTLIKYLTDGVLLREIL-SNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 83 ~~~~~~~~~~~~~~i~v~T~~~l~~~l~-~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
-.|-..++..+. ....+...++|||||+- |++...+..+++... +.+.++|++.
T Consensus 414 ----------------a~TI~sll~~~~~~~~~l~~~~vlIVDEAS--Mv~~~~m~~LL~~a~---~~garvVLVG 468 (988)
T PRK13889 414 ----------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAG--MVGTRQLERVLSHAA---DAGAKVVLVG 468 (988)
T ss_pred ----------------hhhHHHHHhhhcccccccccCcEEEEECcc--cCCHHHHHHHHHhhh---hCCCEEEEEC
Confidence 012222221111 12246677899999998 788776666555433 2357788876
No 248
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.75 E-value=0.00031 Score=62.46 Aligned_cols=141 Identities=22% Similarity=0.261 Sum_probs=81.7
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhh-hHHHHHHHHHHhCCccCCeeeeeeeecccCCCCc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l-~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (432)
+.+|+.+.++|++||||||+...++.......|...+--.+...+ .....+++.+.+. .+|..-....++..
T Consensus 36 i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~-~Vgl~~~~~~ryPh------ 108 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLE-KVGLPEEFLYRYPH------ 108 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHH-HhCCCHHHhhcCCc------
Confidence 568999999999999999999988887776655444433332111 1112222222221 11100000000000
Q ss_pred eEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecccChHHHHhhccC
Q 014006 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLDGEKVSKFFSN 171 (432)
Q Consensus 96 ~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~-~~~~ii~~SAT~~~~~~~~~~~~ 171 (432)
-.+.|+..+..+.+...-+.+++|.||.- .++|......++..+..... .+.-.+++|.-+. +.+++.+
T Consensus 109 ---elSGGQrQRi~IARALal~P~liV~DEpv-SaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~---vv~~isd 178 (268)
T COG4608 109 ---ELSGGQRQRIGIARALALNPKLIVADEPV-SALDVSVQAQILNLLKDLQEELGLTYLFISHDLS---VVRYISD 178 (268)
T ss_pred ---ccCchhhhhHHHHHHHhhCCcEEEecCch-hhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH---hhhhhcc
Confidence 12455666666666667788999999998 78888765555544444322 1567888887665 4455544
No 249
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.75 E-value=0.00044 Score=60.99 Aligned_cols=69 Identities=12% Similarity=0.208 Sum_probs=45.4
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
.-.+.|...+..+......+.+++++||.- ..+|......+.+.+......+..+|+.|. +.+.+.++.
T Consensus 134 ~~LS~G~~qrv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh--~~~~~~~~~ 202 (213)
T cd03262 134 AQLSGGQQQRVAIARALAMNPKVMLFDEPT-SALDPELVGEVLDVMKDLAEEGMTMVVVTH--EMGFAREVA 202 (213)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHhC
Confidence 345677776666666677889999999998 789988877766665554433345666554 444444443
No 250
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.75 E-value=0.00017 Score=62.84 Aligned_cols=106 Identities=19% Similarity=0.165 Sum_probs=66.3
Q ss_pred CCchhhhHHHHHHHHhc---CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCC
Q 014006 3 NLPILQYEETIVETVEQ---NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~---~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~ 79 (432)
++=+.+.|.++...+.+ |++.+.+.-.|.|||+.+.+++......+..-+.+++|. +|..|..+.+.+.++..++.
T Consensus 21 ~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk-~Ll~q~~~~L~~~lg~l~~r 99 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPK-ALLEQMRQMLRSRLGGLLNR 99 (229)
T ss_pred CceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCH-HHHHHHHHHHHHHHHHHhCC
Confidence 56678889998888765 578999999999999555555544433444455556664 46667666665555433333
Q ss_pred eeeeeeeecccC-----------------CCCceEEEcCHHHHHHHHh
Q 014006 80 EVGYAIRFEDRT-----------------SERTLIKYLTDGVLLREIL 110 (432)
Q Consensus 80 ~~g~~~~~~~~~-----------------~~~~~i~v~T~~~l~~~l~ 110 (432)
.+- ...++... .....|+++||+.++...+
T Consensus 100 ~i~-~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L 146 (229)
T PF12340_consen 100 RIY-HLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKL 146 (229)
T ss_pred eeE-EecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHH
Confidence 332 22222211 1245688999998775543
No 251
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.75 E-value=0.0001 Score=64.85 Aligned_cols=67 Identities=22% Similarity=0.270 Sum_probs=42.5
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+. |.+.+.+..+.
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~--tH~~~~~~~~~ 193 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPT-NGLDPDGIKELRELILSLRDQGITVLIS--SHLLSEIQKVA 193 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEE--cCCHHHHHHhc
Confidence 4556655555555567788999999998 7899888777666555544333444444 44544444443
No 252
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.0004 Score=71.24 Aligned_cols=125 Identities=19% Similarity=0.249 Sum_probs=78.1
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCC-cEE-Eecc-cchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKS-GII-GVTQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~-~~v-l~~~-P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (432)
.++.+.++||||+||||.+..+........+ .++ ++.. +.|.-+.++.+.+++..+..+.
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~----------------- 246 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH----------------- 246 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc-----------------
Confidence 3678899999999999777767665532333 344 3333 3455566666666666654321
Q ss_pred eEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHH
Q 014006 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVS 166 (432)
Q Consensus 96 ~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~ 166 (432)
.+.+|..+...+. .+.+.++|+||=+- |+.....+...+..+.......-.++.+|||...+.+.
T Consensus 247 --~~~~~~~l~~al~---~~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 247 --AVKDAADLRFALA---ALGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred --ccCCHHHHHHHHH---HhcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 1225766665554 34567899999998 55444445555666654443335688899998655433
No 253
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.74 E-value=0.00012 Score=69.13 Aligned_cols=150 Identities=20% Similarity=0.183 Sum_probs=81.5
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccch----------------------hhhHHHHHHHHHHhC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR----------------------VAAVSVARRVAQELG 74 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~----------------------~l~~q~~~~~~~~~~ 74 (432)
+.+|+.+.+.||+|+||||++..+........|...+.-.+.. ..+.+....+....+
T Consensus 64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~ 143 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG 143 (340)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC
Confidence 5689999999999999999999998876654443222211110 001111111111111
Q ss_pred CccCC---ee-eeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCC
Q 014006 75 VRLGE---EV-GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (432)
Q Consensus 75 ~~~~~---~~-g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~ 150 (432)
..... .. .....+.-....+..+--.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+......+
T Consensus 144 ~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt-~gLD~~~r~~l~~~l~~l~~~g 222 (340)
T PRK13536 144 MSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT-TGLDPHARHLIWERLRSLLARG 222 (340)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCC
Confidence 00000 00 0000000000012233446777777777666677889999999998 7899988877666666554333
Q ss_pred cEEEEEecccChHHHHhhc
Q 014006 151 LKILITSATLDGEKVSKFF 169 (432)
Q Consensus 151 ~~ii~~SAT~~~~~~~~~~ 169 (432)
.-+|+.|. +.+.+.++.
T Consensus 223 ~tilisSH--~l~e~~~~~ 239 (340)
T PRK13536 223 KTILLTTH--FMEEAERLC 239 (340)
T ss_pred CEEEEECC--CHHHHHHhC
Confidence 44555444 434444444
No 254
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.73 E-value=0.00025 Score=62.79 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=42.3
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc-CCcEEEEEeccc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~-~~~~ii~~SAT~ 160 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+.+.+..... .+.-+|+.|..+
T Consensus 141 LS~G~~qrv~la~al~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 201 (218)
T cd03255 141 LSGGQQQRVAIARALANDPKIILADEPT-GNLDSETGKEVMELLRELNKEAGTTIVVVTHDP 201 (218)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 5667766666666678889999999998 78998887776666655443 235566666544
No 255
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.73 E-value=1.4e-05 Score=67.37 Aligned_cols=124 Identities=13% Similarity=0.157 Sum_probs=75.3
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeec--Ccccccc
Q 014006 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTN--IAETSLT 288 (432)
Q Consensus 211 ~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~--~~~~Gid 288 (432)
..++.+|||+||.+..+.+...+...... .++.+..- ...++..+++.|+++.-.|++|+. .+..|||
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~------~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD 76 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEE------KGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGID 76 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-------ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS-
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhccc------ccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeec
Confidence 45689999999999999999988764210 12223222 245677788888989999999998 9999999
Q ss_pred cCC--eEEEEeCCcccceeecCCC------------CCccceEeeecHhhHHHhhcccCCCCCCeEEEec
Q 014006 289 VDG--VVYVIDCGYVKQRQYNPSS------------GMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLY 344 (432)
Q Consensus 289 i~~--v~~VI~~~~~~~~~~~~~~------------~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~ 344 (432)
+++ .+.||-.|+|....-|+.. ........+...-...|-+||+=|.....+..++
T Consensus 77 ~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l 146 (167)
T PF13307_consen 77 FPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIIL 146 (167)
T ss_dssp -ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEE
T ss_pred CCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEE
Confidence 996 7889999998644322210 0011112233445677999999999654444443
No 256
>PRK10908 cell division protein FtsE; Provisional
Probab=97.72 E-value=0.00027 Score=62.80 Aligned_cols=61 Identities=15% Similarity=0.292 Sum_probs=40.7
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|..+
T Consensus 137 ~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 197 (222)
T PRK10908 137 QLSGGEQQRVGIARAVVNKPAVLLADEPT-GNLDDALSEGILRLFEEFNRVGVTVLMATHDI 197 (222)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35566666666655567788999999998 78888876666555555433335566655543
No 257
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00059 Score=65.15 Aligned_cols=122 Identities=21% Similarity=0.230 Sum_probs=70.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEE-e-cccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceE
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-V-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl-~-~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 97 (432)
+..++++||||+||||.+..++.......+.++. + .-+.|..+.++.++.++..+....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~------------------- 283 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY------------------- 283 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCee-------------------
Confidence 4568899999999998887777544223333443 3 345677777776766665543210
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCC-CCHHHHHHHHHHHHhhh---cCCcEEEEEecccChHHHH
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERS-LNTDILLGLVKRLVNLR---ASKLKILITSATLDGEKVS 166 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~-~~~~~~~~~l~~~~~~~---~~~~~ii~~SAT~~~~~~~ 166 (432)
.......+...+. -.+.++|+||=+- +. .+...+.. +..+.... ...-.++.+|||...+.+.
T Consensus 284 ~~~~~~~l~~~l~----~~~~D~VLIDTaG-r~~rd~~~l~e-L~~~~~~~~~~~~~e~~LVLsAt~~~~~~~ 350 (432)
T PRK12724 284 PVKDIKKFKETLA----RDGSELILIDTAG-YSHRNLEQLER-MQSFYSCFGEKDSVENLLVLSSTSSYHHTL 350 (432)
T ss_pred ehHHHHHHHHHHH----hCCCCEEEEeCCC-CCccCHHHHHH-HHHHHHhhcCCCCCeEEEEEeCCCCHHHHH
Confidence 0011223333332 2568999999877 44 34444444 44444432 1124678899999765433
No 258
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.72 E-value=0.0003 Score=59.88 Aligned_cols=121 Identities=16% Similarity=0.201 Sum_probs=59.0
Q ss_pred HHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCC
Q 014006 14 VETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSE 93 (432)
Q Consensus 14 ~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 93 (432)
.+.+.+++++++.||+|+|||.++..+...... .+..++++. ...|. ..+..... ..
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~~-~~~L~----~~l~~~~~-----------------~~ 97 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFIT-ASDLL----DELKQSRS-----------------DG 97 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEE-HHHHH----HHHHCCHC-----------------CT
T ss_pred CCCcccCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEee-cCcee----cccccccc-----------------cc
Confidence 344567899999999999999777666654433 455666653 22333 32211000 00
Q ss_pred CceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhccCC
Q 014006 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSNC 172 (432)
Q Consensus 94 ~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~ 172 (432)
+.+.+.+. +.+++++||||.-. ....+.....+-.++..+-.+..+|+ |.-++.+.+.+.+++.
T Consensus 98 -------~~~~~~~~------l~~~dlLilDDlG~-~~~~~~~~~~l~~ii~~R~~~~~tIi-TSN~~~~~l~~~~~d~ 161 (178)
T PF01695_consen 98 -------SYEELLKR------LKRVDLLILDDLGY-EPLSEWEAELLFEIIDERYERKPTII-TSNLSPSELEEVLGDR 161 (178)
T ss_dssp -------THCHHHHH------HHTSSCEEEETCTS-S---HHHHHCTHHHHHHHHHT-EEEE-EESS-HHHHHT-----
T ss_pred -------chhhhcCc------cccccEecccccce-eeecccccccchhhhhHhhcccCeEe-eCCCchhhHhhccccc
Confidence 12223333 23578999999873 22234444444555554433345555 4456777788887643
No 259
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.72 E-value=0.0008 Score=61.68 Aligned_cols=54 Identities=28% Similarity=0.444 Sum_probs=32.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhC
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG 74 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~ 74 (432)
...+++.||+|+|||+++..+....... ...+..+.+...-..+....+...++
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~~~~~~~~~~~~~~~~l~~i~~~lG 96 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RVVAAKLVNTRVDAEDLLRMVAADFG 96 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-CeEEeeeeCCCCCHHHHHHHHHHHcC
Confidence 3478999999999999998887665422 22222333333333455555555544
No 260
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.72 E-value=0.00092 Score=62.38 Aligned_cols=128 Identities=20% Similarity=0.306 Sum_probs=69.3
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEeccc-chhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceE
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP-RRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P-~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 97 (432)
.++.+.++||+|+||||.+..++......++...++... .+..+.++...++...+... +. . ....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~---~~-----~-~~~~---- 179 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPV---IA-----Q-KEGA---- 179 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceE---EE-----e-CCCC----
Confidence 356888999999999988777776655433334444333 46655555555555544221 00 0 0001
Q ss_pred EEcCHHHH-HHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhh------cCCcEEEEEecccChHH
Q 014006 98 KYLTDGVL-LREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR------ASKLKILITSATLDGEK 164 (432)
Q Consensus 98 ~v~T~~~l-~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~------~~~~~ii~~SAT~~~~~ 164 (432)
.|... ...+. .....++++||||=+- +....+.++..++.+.+.. ...-.++.++||...+.
T Consensus 180 ---dpa~~v~~~l~-~~~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~ 248 (318)
T PRK10416 180 ---DPASVAFDAIQ-AAKARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNA 248 (318)
T ss_pred ---CHHHHHHHHHH-HHHhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHH
Confidence 12111 11111 1123678999999998 5544444333455544321 12246788999975543
No 261
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00033 Score=67.65 Aligned_cols=142 Identities=20% Similarity=0.174 Sum_probs=85.8
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeee---------
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF--------- 87 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~--------- 87 (432)
+.+|+.+.|.|+|||||||++..+......++|...+--.|.+.+-.+-.++--.....++....| +.+.
T Consensus 361 l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~~A 439 (573)
T COG4987 361 LAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANPDA 439 (573)
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCCCC
Confidence 578999999999999999999988887777777766666666666554222111111111111111 0000
Q ss_pred --------------ccc---CCCCceEEE------cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHH
Q 014006 88 --------------EDR---TSERTLIKY------LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (432)
Q Consensus 88 --------------~~~---~~~~~~i~v------~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~ 144 (432)
++. ..++-+-.+ .+-|...++.+.+..+++-.++++||.- -.+|..--.+++..+.
T Consensus 440 sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPT-egLD~~TE~~vL~ll~ 518 (573)
T COG4987 440 SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPT-EGLDPITERQVLALLF 518 (573)
T ss_pred CHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCc-ccCChhhHHHHHHHHH
Confidence 000 000000000 2344555555555567788999999998 5889888888888887
Q ss_pred hhhcCCcEEEEEecccC
Q 014006 145 NLRASKLKILITSATLD 161 (432)
Q Consensus 145 ~~~~~~~~ii~~SAT~~ 161 (432)
..... .-+++.|.-+.
T Consensus 519 ~~~~~-kTll~vTHrL~ 534 (573)
T COG4987 519 EHAEG-KTLLMVTHRLR 534 (573)
T ss_pred HHhcC-CeEEEEecccc
Confidence 77653 56777776653
No 262
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.70 E-value=0.0002 Score=63.66 Aligned_cols=149 Identities=17% Similarity=0.140 Sum_probs=77.4
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEE------------ecccchhhhHHHHHHHHHHhCCccCC---ee
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG------------VTQPRRVAAVSVARRVAQELGVRLGE---EV 81 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl------------~~~P~~~l~~q~~~~~~~~~~~~~~~---~~ 81 (432)
+.+|+.+.|.||+||||||++..+........|...+ ...|.. .+.+.........+..... ..
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~ 123 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPEL-TGRENIYLNGRLLGLSRKEIDEKI 123 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCC-cHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4588999999999999999999888876544432211 111110 1111111000101100000 00
Q ss_pred eeee-eecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 82 GYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 82 g~~~-~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.... ...-.......+.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|.
T Consensus 124 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~-~gLD~~~~~~~~~~l~~~~~~~~tiii~sH-- 200 (224)
T cd03220 124 DEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVL-AVGDAAFQEKCQRRLRELLKQGKTVILVSH-- 200 (224)
T ss_pred HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeC--
Confidence 0000 000000011223345677777766666677889999999998 789988776666655554333345555544
Q ss_pred ChHHHHhhc
Q 014006 161 DGEKVSKFF 169 (432)
Q Consensus 161 ~~~~~~~~~ 169 (432)
+.+.+..+.
T Consensus 201 ~~~~~~~~~ 209 (224)
T cd03220 201 DPSSIKRLC 209 (224)
T ss_pred CHHHHHHhC
Confidence 334444443
No 263
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.70 E-value=5.2e-05 Score=66.57 Aligned_cols=61 Identities=23% Similarity=0.230 Sum_probs=42.5
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|.-+
T Consensus 134 ~lS~G~~qr~~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 194 (206)
T TIGR03608 134 ELSGGEQQRVALARAILKDPPLILADEPT-GSLDPKNRDEVLDLLLELNDEGKTIIIVTHDP 194 (206)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCc-CCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 35677776666666677889999999998 78898887776666555433335566665543
No 264
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.70 E-value=0.00016 Score=63.76 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=42.4
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSAT 159 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT 159 (432)
-.+.|+..+..+......+.+++++||.. ..+|......+.+.+...... +..+|+.|..
T Consensus 128 ~LS~G~~qrl~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~ 188 (213)
T TIGR01277 128 QLSGGQRQRVALARCLVRPNPILLLDEPF-SALDPLLREEMLALVKQLCSERQRTLLMVTHH 188 (213)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 35677777776666667788999999998 789998877766666654432 3556665544
No 265
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.70 E-value=0.00022 Score=61.70 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=42.0
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|.-
T Consensus 127 ~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~tili~sH~ 186 (190)
T TIGR01166 127 CLSGGEKKRVAIAGAVAMRPDVLLLDEPT-AGLDPAGREQMLAILRRLRAEGMTVVISTHD 186 (190)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 35666666666665567788999999998 7899888777666665544334566666654
No 266
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.69 E-value=0.00027 Score=62.43 Aligned_cols=66 Identities=17% Similarity=0.277 Sum_probs=42.7
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhh
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~ 168 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.|. +.+.+..+
T Consensus 137 LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~tiiivtH--~~~~~~~~ 202 (214)
T cd03292 137 LSGGEQQRVAIARAIVNSPTILIADEPT-GNLDPDTTWEIMNLLKKINKAGTTVVVATH--AKELVDTT 202 (214)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHh
Confidence 5566666666666667888999999998 788988877766666554333344555444 33334444
No 267
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.69 E-value=0.00019 Score=65.37 Aligned_cols=142 Identities=16% Similarity=0.095 Sum_probs=76.1
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEE-----ecccchhhh--HHHHHHHHH---HhCCccCCeeee---
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-----VTQPRRVAA--VSVARRVAQ---ELGVRLGEEVGY--- 83 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl-----~~~P~~~l~--~q~~~~~~~---~~~~~~~~~~g~--- 83 (432)
+.+|+.+.+.||+||||||++..++.......|...+ +......+. ..+.+.+.. ..+.........
T Consensus 47 i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 126 (264)
T PRK13546 47 AYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPK 126 (264)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5688999999999999999999998876554442211 110000000 011111110 001000000000
Q ss_pred ee-eecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 84 AI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 84 ~~-~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
.. ...-.......+.-.+.|...+..+....+.+.+++++||.- ..+|......++..+......+..+|+.|.-
T Consensus 127 ~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt-~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~ 202 (264)
T PRK13546 127 IIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEAL-SVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN 202 (264)
T ss_pred HHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCcc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 00 000000012234446788888777776677889999999998 7888887666555554443334556666554
No 268
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.69 E-value=0.00016 Score=63.69 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=45.5
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhh
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~ 168 (432)
--.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.|. +.+.+..+
T Consensus 133 ~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH--~~~~~~~~ 200 (211)
T cd03225 133 FTLSGGQKQRVAIAGVLAMDPDILLLDEPT-AGLDPAGRRELLELLKKLKAEGKTIIIVTH--DLDLLLEL 200 (211)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHh
Confidence 345677777666666677888999999998 789988877766666555433345555554 33444443
No 269
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.67 E-value=9.2e-05 Score=65.60 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=43.0
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|. +.+.+..+.
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~tH--~~~~~~~~~ 203 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPT-TGLDVMATRALREFIRQLRALGKCILFSTH--IMQEVERLC 203 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHhc
Confidence 4566666665555567888999999998 789988877766666554333344555544 433444443
No 270
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00027 Score=69.07 Aligned_cols=142 Identities=22% Similarity=0.215 Sum_probs=85.8
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeee---eeeee-----
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG---YAIRF----- 87 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g---~~~~~----- 87 (432)
.+..|+.+.++|++||||||++..++.......|...+--.|.+.+..+..++=....+...-...| .+...
T Consensus 343 t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~ 422 (559)
T COG4988 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDA 422 (559)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcC
Confidence 4568999999999999999999999988876666555555666655543322210111100000000 00000
Q ss_pred --c------------cc--CCCCceEEE------cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 88 --E------------DR--TSERTLIKY------LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 88 --~------------~~--~~~~~~i~v------~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
+ +. ....-+-.+ .+.|.-.+..+.+..+++-+++++||+- -++|.+.-..+++.+.+
T Consensus 423 s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpT-A~LD~etE~~i~~~l~~ 501 (559)
T COG4988 423 SDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPT-AHLDAETEQIILQALQE 501 (559)
T ss_pred CHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCc-cCCCHhHHHHHHHHHHH
Confidence 0 00 001112111 4788888888888889999999999987 56888877776777766
Q ss_pred hhcCCcEEEEEecc
Q 014006 146 LRASKLKILITSAT 159 (432)
Q Consensus 146 ~~~~~~~ii~~SAT 159 (432)
.... .-+++.|.-
T Consensus 502 l~~~-ktvl~itHr 514 (559)
T COG4988 502 LAKQ-KTVLVITHR 514 (559)
T ss_pred HHhC-CeEEEEEcC
Confidence 6543 445555543
No 271
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.67 E-value=0.00033 Score=60.97 Aligned_cols=139 Identities=23% Similarity=0.311 Sum_probs=79.2
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHH--HHH---------------------HHHHh
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSV--ARR---------------------VAQEL 73 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~--~~~---------------------~~~~~ 73 (432)
+.+|+.+-|.|+.||||||++..++.......|...+--.|........ ++. +.+-+
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl 109 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPL 109 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhh
Confidence 4689999999999999999999888877665554433332221110000 000 00000
Q ss_pred CC-----------ccCCeeeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHH
Q 014006 74 GV-----------RLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (432)
Q Consensus 74 ~~-----------~~~~~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~ 142 (432)
.. ..-..+|-...+ ....++ -.+-|.+.+....+....+.+++|+||+- .++|......+++.
T Consensus 110 ~~~~~~~~~~~i~~~L~~VgL~~~~---l~R~P~--eLSGGQ~QRiaIARAL~~~PklLIlDEpt-SaLD~siQa~Ilnl 183 (252)
T COG1124 110 RPHGLSKSQQRIAELLDQVGLPPSF---LDRRPH--ELSGGQRQRIAIARALIPEPKLLILDEPT-SALDVSVQAQILNL 183 (252)
T ss_pred ccCCccHHHHHHHHHHHHcCCCHHH---HhcCch--hcChhHHHHHHHHHHhccCCCEEEecCch-hhhcHHHHHHHHHH
Confidence 00 000000100000 000011 14677777777777777889999999998 78898887777766
Q ss_pred HHhhhcC-CcEEEEEecccC
Q 014006 143 LVNLRAS-KLKILITSATLD 161 (432)
Q Consensus 143 ~~~~~~~-~~~ii~~SAT~~ 161 (432)
+...... +.-+++.|.-+.
T Consensus 184 L~~l~~~~~lt~l~IsHdl~ 203 (252)
T COG1124 184 LLELKKERGLTYLFISHDLA 203 (252)
T ss_pred HHHHHHhcCceEEEEeCcHH
Confidence 6654432 356777776543
No 272
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.67 E-value=0.00066 Score=61.63 Aligned_cols=117 Identities=20% Similarity=0.261 Sum_probs=67.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcCCCC------CcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCC
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHGYTK------SGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSER 94 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~~~~------~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (432)
.+++|+|+||-|||+++..+...+.... -..+++-.|...-....+..+-..++........
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~------------ 129 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDR------------ 129 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCC------------
Confidence 4899999999999998888876653321 1255566677777777777777776654321110
Q ss_pred ceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHH-----HHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 95 TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI-----LLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 95 ~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~-----~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
+.-. ......++. --+++++||||+|. .+.... ++..+|.+.+.. ++.+|++. |.
T Consensus 130 --~~~~-~~~~~~llr----~~~vrmLIIDE~H~-lLaGs~~~qr~~Ln~LK~L~NeL--~ipiV~vG-t~ 189 (302)
T PF05621_consen 130 --VAKL-EQQVLRLLR----RLGVRMLIIDEFHN-LLAGSYRKQREFLNALKFLGNEL--QIPIVGVG-TR 189 (302)
T ss_pred --HHHH-HHHHHHHHH----HcCCcEEEeechHH-HhcccHHHHHHHHHHHHHHhhcc--CCCeEEec-cH
Confidence 0000 011122222 24688999999993 333322 444455554333 35566653 53
No 273
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.67 E-value=0.00058 Score=60.22 Aligned_cols=60 Identities=20% Similarity=0.311 Sum_probs=40.9
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
-.+.|...+..+......+.+++++||.- ..+|......+.+.+......+..+|+.|.-
T Consensus 132 ~LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~ 191 (213)
T cd03235 132 ELSGGQQQRVLLARALVQDPDLLLLDEPF-AGVDPKTQEDIYELLRELRREGMTILVVTHD 191 (213)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 35666666666655567788999999998 7899888777666665544333455555543
No 274
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.67 E-value=0.00011 Score=65.25 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=45.2
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+.....+ +..+|+.|. +.+.+..+.
T Consensus 131 ~LS~G~~qr~~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH--~~~~~~~~~ 199 (220)
T cd03265 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPT-IGLDPQTRAHVWEYIEKLKEEFGMTILLTTH--YMEEAEQLC 199 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCc-cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC--CHHHHHHhC
Confidence 35677777766666678889999999998 789988877766666554432 345555554 444444443
No 275
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.66 E-value=0.00027 Score=63.35 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=44.9
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +.-+|+.|. +.+.+..+.
T Consensus 136 ~LSgG~~qrv~ia~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH--~~~~~~~~~ 204 (235)
T cd03261 136 ELSGGMKKRVALARALALDPELLLYDEPT-AGLDPIASGVIDDLIRSLKKELGLTSIMVTH--DLDTAFAIA 204 (235)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHhcCcEEEEEec--CHHHHHHhc
Confidence 35677777776666677889999999998 789988877766666554332 345555554 433444443
No 276
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.65 E-value=0.00021 Score=65.86 Aligned_cols=143 Identities=21% Similarity=0.161 Sum_probs=76.8
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhh-hHHHHHHH---H-----HHhCCccCCee------
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-AVSVARRV---A-----QELGVRLGEEV------ 81 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l-~~q~~~~~---~-----~~~~~~~~~~~------ 81 (432)
+.+|+.+.|.||+|+||||++..+........|...+--.+.... ..+..+.+ . ..+..++...+
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~ 109 (279)
T PRK13635 30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLEN 109 (279)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhh
Confidence 568999999999999999999988887665544332222111000 00000000 0 00000000000
Q ss_pred -eeeee-----e-------cccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc
Q 014006 82 -GYAIR-----F-------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (432)
Q Consensus 82 -g~~~~-----~-------~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~ 148 (432)
+.... . .-.......+--.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+.....
T Consensus 110 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13635 110 IGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEAT-SMLDPRGRREVLETVRQLKE 188 (279)
T ss_pred CCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHH
Confidence 00000 0 0000011223345677777776666677889999999998 78999887776666655443
Q ss_pred C-CcEEEEEeccc
Q 014006 149 S-KLKILITSATL 160 (432)
Q Consensus 149 ~-~~~ii~~SAT~ 160 (432)
. +..+|+.|.-+
T Consensus 189 ~~~~tilivsH~~ 201 (279)
T PRK13635 189 QKGITVLSITHDL 201 (279)
T ss_pred cCCCEEEEEecCH
Confidence 2 34566655443
No 277
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.65 E-value=0.0014 Score=57.27 Aligned_cols=148 Identities=20% Similarity=0.176 Sum_probs=84.3
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEe--cccchhh---------hHHHHHHHHHHhCCcc-------C
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV--TQPRRVA---------AVSVARRVAQELGVRL-------G 78 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~--~~P~~~l---------~~q~~~~~~~~~~~~~-------~ 78 (432)
+.+|+.+-+.|++||||||++..+.....+..|...+- +.|.-++ ..+...-....+|..- .
T Consensus 50 i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~ 129 (249)
T COG1134 50 IYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVD 129 (249)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHH
Confidence 35688899999999999999998888777666543221 2222111 1111111112221110 0
Q ss_pred CeeeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q 014006 79 EEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (432)
Q Consensus 79 ~~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SA 158 (432)
..+-++.. .+ --...+---+.|+..++..+-..-.+.+++++||+= --.|..|...-.+++.....++.-+|+.|.
T Consensus 130 eIieFaEL-G~--fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvl-avGD~~F~~K~~~rl~e~~~~~~tiv~VSH 205 (249)
T COG1134 130 EIIEFAEL-GD--FIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVL-AVGDAAFQEKCLERLNELVEKNKTIVLVSH 205 (249)
T ss_pred HHHHHHHH-HH--HhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhh-hcCCHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 00000000 00 011233345678888888777677789999999996 567777776666666666444455666665
Q ss_pred ccChHHHHhhcc
Q 014006 159 TLDGEKVSKFFS 170 (432)
Q Consensus 159 T~~~~~~~~~~~ 170 (432)
+...+++|.+
T Consensus 206 --d~~~I~~~Cd 215 (249)
T COG1134 206 --DLGAIKQYCD 215 (249)
T ss_pred --CHHHHHHhcC
Confidence 4455666653
No 278
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=0.00013 Score=64.75 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=45.3
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +.-+|+.|. +.+.+..+.
T Consensus 131 ~LSgG~~qrl~la~al~~~p~lllLDEPt-~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH--~~~~~~~~~ 199 (220)
T cd03293 131 QLSGGMRQRVALARALAVDPDVLLLDEPF-SALDALTREQLQEELLDIWRETGKTVLLVTH--DIDEAVFLA 199 (220)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEECCCC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEec--CHHHHHHhC
Confidence 46777777777666677788999999998 789988877766666554322 344555544 333344443
No 279
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.64 E-value=0.00015 Score=74.36 Aligned_cols=141 Identities=18% Similarity=0.157 Sum_probs=80.3
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHH-H---HH---HhCCccCCeeeee---ee
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR-V---AQ---ELGVRLGEEVGYA---IR 86 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~-~---~~---~~~~~~~~~~g~~---~~ 86 (432)
+.+|+.+.|+||+||||||++..++... +..|...+--.+.+....+..++ + .+ .++.++-....++ ..
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~ 451 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDAS 451 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCC
Confidence 4689999999999999999999888877 55443333333333322221111 0 00 0000000000000 00
Q ss_pred ec---------------ccCCCCceE------EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 87 FE---------------DRTSERTLI------KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 87 ~~---------------~~~~~~~~i------~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
.+ .....+.+- .-.+.|...+..+.+..+.+.+++|+||+- ..+|.+....+.+.+..
T Consensus 452 ~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~T-SaLD~~te~~i~~~l~~ 530 (588)
T PRK11174 452 DEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPT-ASLDAHSEQLVMQALNA 530 (588)
T ss_pred HHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHH
Confidence 00 000000111 125678888777777788899999999998 78999888887776665
Q ss_pred hhcCCcEEEEEeccc
Q 014006 146 LRASKLKILITSATL 160 (432)
Q Consensus 146 ~~~~~~~ii~~SAT~ 160 (432)
..+ +.-+|+.|.-+
T Consensus 531 ~~~-~~TvIiItHrl 544 (588)
T PRK11174 531 ASR-RQTTLMVTHQL 544 (588)
T ss_pred HhC-CCEEEEEecCh
Confidence 544 35566666554
No 280
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.64 E-value=0.0003 Score=63.26 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=41.7
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
-.+.|...+..+......+.+++++||.- ..+|......+.+.+.... .+..+|+.|.-
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~ 197 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEAT-SALDAESEKLVQEALDRAM-KGRTTIVIAHR 197 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence 45777777776666677888999999998 7899888777666665544 34555555543
No 281
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.64 E-value=0.00042 Score=61.78 Aligned_cols=62 Identities=21% Similarity=0.265 Sum_probs=43.5
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
+.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+..... +..+|+.|..+
T Consensus 148 ~~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~ 209 (226)
T cd03248 148 GSQLSGGQKQRVAIARALIRNPQVLILDEAT-SALDAESEQQVQQALYDWPE-RRTVLVIAHRL 209 (226)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHcC-CCEEEEEECCH
Confidence 3345777777777766678889999999998 78998887776666655433 35566665443
No 282
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.64 E-value=0.0004 Score=62.63 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=43.7
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|.- .+.+.++.
T Consensus 145 ~LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~--~~~~~~~~ 213 (243)
T TIGR02315 145 QLSGGQQQRVAIARALAQQPDLILADEPI-ASLDPKTSKQVMDYLKRINKEDGITVIINLHQ--VDLAKKYA 213 (243)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC--HHHHHHhc
Confidence 35666666666666667888999999998 788888877666555554332 3445555543 33344443
No 283
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.64 E-value=0.00011 Score=65.88 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=43.9
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc-CCcEEEEEeccc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~-~~~~ii~~SAT~ 160 (432)
.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+..... .+..+|+.|..+
T Consensus 131 ~~LS~G~~qrl~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 193 (236)
T TIGR03864 131 RELNGGHRRRVEIARALLHRPALLLLDEPT-VGLDPASRAAIVAHVRALCRDQGLSVLWATHLV 193 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 346777777777766677889999999998 78999887776666655432 235566665544
No 284
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=0.00025 Score=63.55 Aligned_cols=61 Identities=23% Similarity=0.227 Sum_probs=43.0
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.-.+.|...+..+......+.+++++||.- ..+|......+.+.+..... +..+|+.|..+
T Consensus 137 ~~LS~G~~qrv~la~al~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~ 197 (234)
T cd03251 137 VKLSGGQRQRIAIARALLKDPPILILDEAT-SALDTESERLVQAALERLMK-NRTTFVIAHRL 197 (234)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEecCH
Confidence 345677777776666677888999999998 78999887776666655443 45566655443
No 285
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.63 E-value=0.00017 Score=64.01 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=43.5
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|. +.+.+..+.
T Consensus 133 LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tiii~sH--~~~~~~~~~ 199 (222)
T cd03224 133 LSGGEQQMLAIARALMSRPKLLLLDEPS-EGLAPKIVEEIFEAIRELRDEGVTILLVEQ--NARFALEIA 199 (222)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHhc
Confidence 4566666665555567788999999998 789988877766666554433345555554 334444444
No 286
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.63 E-value=0.00021 Score=66.60 Aligned_cols=149 Identities=18% Similarity=0.191 Sum_probs=79.7
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhh----------------------hHHHHHHHHHHhC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA----------------------AVSVARRVAQELG 74 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l----------------------~~q~~~~~~~~~~ 74 (432)
+.+|+.+.+.||+|+||||++..+........|...+.-.+.... +.+.....+..++
T Consensus 25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~ 104 (301)
T TIGR03522 25 AQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG 104 (301)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC
Confidence 468899999999999999999988887655544322211111000 1111110111111
Q ss_pred CccC---Ceeeee-eeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCC
Q 014006 75 VRLG---EEVGYA-IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (432)
Q Consensus 75 ~~~~---~~~g~~-~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~ 150 (432)
.... ...... ..+.-....+..+--.+.|+..+..+....+.+..++++||.- ..+|......+.+.+.... .+
T Consensus 105 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt-~gLD~~~~~~l~~~l~~~~-~~ 182 (301)
T TIGR03522 105 MKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT-TGLDPNQLVEIRNVIKNIG-KD 182 (301)
T ss_pred CCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHhc-CC
Confidence 0000 000000 0000000012233446778777777777778899999999998 7899888777666555543 34
Q ss_pred cEEEEEecccChHHHHhhc
Q 014006 151 LKILITSATLDGEKVSKFF 169 (432)
Q Consensus 151 ~~ii~~SAT~~~~~~~~~~ 169 (432)
..+++.|.- .+.+.++.
T Consensus 183 ~tiii~sH~--l~~~~~~~ 199 (301)
T TIGR03522 183 KTIILSTHI--MQEVEAIC 199 (301)
T ss_pred CEEEEEcCC--HHHHHHhC
Confidence 445555543 33444443
No 287
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=0.00032 Score=63.00 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=42.8
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
-.+.|...+..+......+.+++++||.- ..+|......+.+.+..... +..+|+.|...
T Consensus 137 ~LS~G~~~rl~la~aL~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~ 196 (236)
T cd03253 137 KLSGGEKQRVAIARAILKNPPILLLDEAT-SALDTHTEREIQAALRDVSK-GRTTIVIAHRL 196 (236)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH
Confidence 45677777777766678889999999998 78998887776666655443 45566655443
No 288
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.62 E-value=0.0003 Score=62.99 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=44.3
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.|.. .+.+..+.
T Consensus 133 ~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~--~~~~~~~~ 200 (232)
T cd03218 133 SLSGGERRRVEIARALATNPKFLLLDEPF-AGVDPIAVQDIQKIIKILKDRGIGVLITDHN--VRETLSIT 200 (232)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--HHHHHHhC
Confidence 35667666666666677888999999998 7899888777655555443333445555543 33444444
No 289
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.61 E-value=0.0001 Score=66.43 Aligned_cols=123 Identities=15% Similarity=0.065 Sum_probs=66.4
Q ss_pred hhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHH---HHHhCCccCCeeee
Q 014006 7 LQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEVGY 83 (432)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~---~~~~~~~~~~~~g~ 83 (432)
+..|--..-.+.+|+ ++...||=|||..+...+.... -.|..|=++.....||..-++.+ .+.+|.+++.....
T Consensus 79 ~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~A-L~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~ 155 (266)
T PF07517_consen 79 YDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNA-LQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSD 155 (266)
T ss_dssp -HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHH-TTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETT
T ss_pred cHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHH-HhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccc
Confidence 344433333445566 7899999999933222222222 23455555556667776655554 45556555544432
Q ss_pred eeeecccCCCCceEEEcCHHHHHH-HHhcCC-------CCCCCcEEEEeCCCcCCCC
Q 014006 84 AIRFEDRTSERTLIKYLTDGVLLR-EILSNP-------DLSPYSVIILDEAHERSLN 132 (432)
Q Consensus 84 ~~~~~~~~~~~~~i~v~T~~~l~~-~l~~~~-------~l~~~~~vViDE~h~~~~~ 132 (432)
....+.+..=.++|+|+|...+.. .+.... ....+.++||||+|...+|
T Consensus 156 ~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~LiD 212 (266)
T PF07517_consen 156 MSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILID 212 (266)
T ss_dssp TEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTTT
T ss_pred cCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEEe
Confidence 211111112246899999987753 333221 3578899999999953333
No 290
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=0.00025 Score=65.37 Aligned_cols=143 Identities=22% Similarity=0.254 Sum_probs=78.1
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhh-HHHHHHHH---H-----HhCCccCCee------
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVA---Q-----ELGVRLGEEV------ 81 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~-~q~~~~~~---~-----~~~~~~~~~~------ 81 (432)
+.+|+.+.|.||+||||||++..+........|...+--.+..... .+..+.+. + ....++...+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~ 109 (279)
T PRK13650 30 VKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLEN 109 (279)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHh
Confidence 5689999999999999999999888876555543322222211000 00000000 0 0000000000
Q ss_pred -eeeeee-----c-------ccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc
Q 014006 82 -GYAIRF-----E-------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA 148 (432)
Q Consensus 82 -g~~~~~-----~-------~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~ 148 (432)
|..... . -....+..+.-.+.|...+..+......+.+++++||.- ..+|......+++.+.....
T Consensus 110 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt-~~LD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13650 110 KGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEAT-SMLDPEGRLELIKTIKGIRD 188 (279)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHH
Confidence 000000 0 000011223345677777777666677889999999998 78898887776666655543
Q ss_pred C-CcEEEEEeccc
Q 014006 149 S-KLKILITSATL 160 (432)
Q Consensus 149 ~-~~~ii~~SAT~ 160 (432)
. +..+|+.|.-+
T Consensus 189 ~~g~tilivtH~~ 201 (279)
T PRK13650 189 DYQMTVISITHDL 201 (279)
T ss_pred hcCCEEEEEecCH
Confidence 2 45666666554
No 291
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=0.00015 Score=64.76 Aligned_cols=61 Identities=21% Similarity=0.212 Sum_probs=43.3
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.-.+.|...+..+......+.+++++||.- ..+|......+.+.+.... .+..+|+.|..+
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~ 198 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEAT-SNIDTETEKLIQEALEKLM-KGRTSIIIAHRL 198 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHhc-CCCEEEEEecCH
Confidence 346777777777777678889999999998 7899888777666655543 345566665443
No 292
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.61 E-value=0.00045 Score=61.68 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=40.9
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSAT 159 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT 159 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|.-
T Consensus 146 ~LS~Ge~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 206 (228)
T PRK10584 146 QLSGGEQQRVALARAFNGRPDVLFADEPT-GNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206 (228)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 35667666666666667888999999998 789988877766655554332 3455665544
No 293
>PRK08116 hypothetical protein; Validated
Probab=97.61 E-value=0.00034 Score=63.74 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=59.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEEE
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKY 99 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v 99 (432)
+..+++.|++|+|||.++..++...... +..++++. ...+. ..+...++.. ..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~-~~~ll----~~i~~~~~~~---------------~~------ 166 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVN-FPQLL----NRIKSTYKSS---------------GK------ 166 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEE-HHHHH----HHHHHHHhcc---------------cc------
Confidence 3459999999999998877776655333 44555553 22222 2332222100 00
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~-~~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+...+.+. +.+.++|||||++. .-..++....+-.++..+- .+.++|+.| ..+++.+...+
T Consensus 167 ~~~~~~~~~------l~~~dlLviDDlg~-e~~t~~~~~~l~~iin~r~~~~~~~IiTs-N~~~~eL~~~~ 229 (268)
T PRK08116 167 EDENEIIRS------LVNADLLILDDLGA-ERDTEWAREKVYNIIDSRYRKGLPTIVTT-NLSLEELKNQY 229 (268)
T ss_pred ccHHHHHHH------hcCCCEEEEecccC-CCCCHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHHHHHH
Confidence 012222222 35678999999973 2233444444445555432 234455544 55555554433
No 294
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=0.00015 Score=65.32 Aligned_cols=69 Identities=13% Similarity=0.203 Sum_probs=45.0
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|. +.+.+..+.
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH--~~~~~~~~~ 212 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPV-ASLDPASSRQVMDLLKRINREEGITVIVSLH--QVDLAREYA 212 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC--CHHHHHHhC
Confidence 335667766666666667788999999998 789988877766666554332 345555554 333444443
No 295
>PRK06893 DNA replication initiation factor; Validated
Probab=97.61 E-value=0.00052 Score=61.20 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+..+++.||+|+|||.++..+....
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3457899999999998877776554
No 296
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.60 E-value=0.0011 Score=64.97 Aligned_cols=126 Identities=19% Similarity=0.260 Sum_probs=71.8
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCC-cEE-Ee-cccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKS-GII-GV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~-~~v-l~-~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (432)
.++.+.++||||+||||.+..+........+ .++ ++ .-+.|..+.++.+.+++.++..... .
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~--~------------- 319 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA--V------------- 319 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec--c-------------
Confidence 4678999999999999877777665533322 233 33 3455777777777777777643210 0
Q ss_pred eEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHh
Q 014006 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSK 167 (432)
Q Consensus 96 ~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~ 167 (432)
-++..+...+ ..+.+.++++||.+- +..........+..+.........++.++||.....+.+
T Consensus 320 ----~~~~Dl~~aL---~~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~ 383 (484)
T PRK06995 320 ----KDAADLRLAL---SELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNE 383 (484)
T ss_pred ----CCchhHHHHH---HhccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHH
Confidence 0111111112 145567899999987 443333333333333322212136788899987665443
No 297
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.60 E-value=0.00027 Score=72.19 Aligned_cols=142 Identities=19% Similarity=0.225 Sum_probs=81.0
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHH-H---H---HHhCCccCCeeeee---ee
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR-V---A---QELGVRLGEEVGYA---IR 86 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~-~---~---~~~~~~~~~~~g~~---~~ 86 (432)
+.+|+.+.++||+||||||++..+........|...+--.+.+....+..++ + . ..++.++.....+. ..
T Consensus 363 i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~ 442 (574)
T PRK11160 363 IKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNAS 442 (574)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccC
Confidence 5689999999999999999999998877666654444333333322211111 0 0 00000000000000 00
Q ss_pred e------------ccc--CCCC------ceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhh
Q 014006 87 F------------EDR--TSER------TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (432)
Q Consensus 87 ~------------~~~--~~~~------~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~ 146 (432)
. +.. ...+ ..-.-.+.|...+..+.+..+.+.+++|+||+- ..+|.+....+.+.+...
T Consensus 443 ~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~t-s~lD~~t~~~i~~~l~~~ 521 (574)
T PRK11160 443 DEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPT-EGLDAETERQILELLAEH 521 (574)
T ss_pred HHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHH
Confidence 0 000 0000 011225678877777777788899999999998 789988877766666655
Q ss_pred hcCCcEEEEEeccc
Q 014006 147 RASKLKILITSATL 160 (432)
Q Consensus 147 ~~~~~~ii~~SAT~ 160 (432)
.+ +.-+|..|.-+
T Consensus 522 ~~-~~tviiitHr~ 534 (574)
T PRK11160 522 AQ-NKTVLMITHRL 534 (574)
T ss_pred cC-CCEEEEEecCh
Confidence 43 35556655543
No 298
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.60 E-value=0.00019 Score=64.71 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=42.0
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSAT 159 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT 159 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +.-+|+.|..
T Consensus 135 ~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~ 195 (242)
T cd03295 135 ELSGGQQQRVGVARALAADPPLLLMDEPF-GALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 35677777777666678889999999998 788888877766666554432 3445555544
No 299
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.60 E-value=0.00087 Score=60.51 Aligned_cols=122 Identities=18% Similarity=0.194 Sum_probs=69.4
Q ss_pred HHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccC
Q 014006 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRT 91 (432)
Q Consensus 12 ~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~ 91 (432)
...+.+.+++++++.||+|+|||.++.++..... ..|.+++++ ++.++..++...+.. |
T Consensus 97 ~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~-~~~el~~~Lk~~~~~----------~--------- 155 (254)
T COG1484 97 SLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFI-TAPDLLSKLKAAFDE----------G--------- 155 (254)
T ss_pred HHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEE-EHHHHHHHHHHHHhc----------C---------
Confidence 3444566889999999999999988777777666 445666665 444555544432211 1
Q ss_pred CCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhcc
Q 014006 92 SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS 170 (432)
Q Consensus 92 ~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~ 170 (432)
...+.|.+. +.+++++||||.--...+....-.+...+...... ... ++|.-.+...+...|+
T Consensus 156 --------~~~~~l~~~------l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~-~~~-~~tsN~~~~~~~~~~~ 218 (254)
T COG1484 156 --------RLEEKLLRE------LKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYES-RSL-IITSNLSFGEWDELFG 218 (254)
T ss_pred --------chHHHHHHH------hhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhh-ccc-eeecCCChHHHHhhcc
Confidence 113344432 45688999999874223322222222222222221 223 6665666666666664
No 300
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.60 E-value=0.00011 Score=75.34 Aligned_cols=142 Identities=20% Similarity=0.233 Sum_probs=80.8
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHH-H---HH---HhCCccCCeeeee---ee
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR-V---AQ---ELGVRLGEEVGYA---IR 86 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~-~---~~---~~~~~~~~~~g~~---~~ 86 (432)
+.+|+.+.|.|++||||||++..++....+..|...+--.+......+..++ + .+ .++.++-....+. ..
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~ 437 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDAT 437 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCC
Confidence 4589999999999999999999888877665554333222322222111111 0 00 0000000000000 00
Q ss_pred e------------c---ccCCCCceE------EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 87 F------------E---DRTSERTLI------KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 87 ~------------~---~~~~~~~~i------~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
. + .....+-+. .-.+.|...+..+.+..+++.+++|+||+- ..+|.+....+.+.+..
T Consensus 438 d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpt-s~LD~~t~~~i~~~l~~ 516 (588)
T PRK13657 438 DEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEAT-SALDVETEAKVKAALDE 516 (588)
T ss_pred HHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHH
Confidence 0 0 000000111 125778888887777788899999999998 78999888887777766
Q ss_pred hhcCCcEEEEEeccc
Q 014006 146 LRASKLKILITSATL 160 (432)
Q Consensus 146 ~~~~~~~ii~~SAT~ 160 (432)
..+ +.-+|+.|.-+
T Consensus 517 ~~~-~~tvIiitHr~ 530 (588)
T PRK13657 517 LMK-GRTTFIIAHRL 530 (588)
T ss_pred Hhc-CCEEEEEEecH
Confidence 543 35566666543
No 301
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.59 E-value=0.0013 Score=60.02 Aligned_cols=126 Identities=19% Similarity=0.303 Sum_probs=69.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEE-ec-ccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceE
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-VT-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl-~~-~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 97 (432)
.+.++++||+|+||||.+..++..... .+.+++ +. -+.|..+.++.+.+.+..+..+ +. . ....
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~-~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~---~~-----~-~~~~---- 137 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKK-QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDV---IK-----Q-KEGA---- 137 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEE---Ee-----C-CCCC----
Confidence 357888899999999766666554433 344444 33 3456666666666666655221 00 0 0000
Q ss_pred EEcCHHHH-HHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc------CCcEEEEEecccChHH
Q 014006 98 KYLTDGVL-LREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA------SKLKILITSATLDGEK 164 (432)
Q Consensus 98 ~v~T~~~l-~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~------~~~~ii~~SAT~~~~~ 164 (432)
.|... ...+. .....++++|+||=+- +......+..-++.+....+ ..-.++.++||...+.
T Consensus 138 ---dp~~~~~~~l~-~~~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~ 206 (272)
T TIGR00064 138 ---DPAAVAFDAIQ-KAKARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNA 206 (272)
T ss_pred ---CHHHHHHHHHH-HHHHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHH
Confidence 12221 11111 1123568999999998 55433444444555554332 3356888999875543
No 302
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.59 E-value=0.00028 Score=62.56 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=44.4
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+..... +..+|+.| .+.+.+..+.
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tii~~s--H~~~~~~~~~ 199 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPT-SGLDPASRRAIWDLILEVRK-GRSIILTT--HSMDEAEALC 199 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCC-CCCCHHHHHHHHHHHHHHhc-CCEEEEEc--CCHHHHHHhc
Confidence 35667766666666677889999999998 78998887776666655543 33444444 3444444444
No 303
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=0.00017 Score=66.23 Aligned_cols=63 Identities=19% Similarity=0.168 Sum_probs=43.7
Q ss_pred eEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 96 ~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
.+--.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.|.-
T Consensus 133 ~~~~LS~G~~qrv~laral~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~l~~~g~til~~tH~ 195 (274)
T PRK13644 133 SPKTLSGGQGQCVALAGILTMEPECLIFDEVT-SMLDPDSGIAVLERIKKLHEKGKTIVYITHN 195 (274)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 33446778777777766678889999999998 7899888777666665544333455555443
No 304
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.58 E-value=0.00011 Score=66.11 Aligned_cols=59 Identities=15% Similarity=0.295 Sum_probs=40.3
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
.+.|...+..+....+.+.+++++||.. ..+|......+.+.+......+..+|+.|.-
T Consensus 137 LS~G~~qrv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 195 (240)
T PRK09493 137 LSGGQQQRVAIARALAVKPKLMLFDEPT-SALDPELRHEVLKVMQDLAEEGMTMVIVTHE 195 (240)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4566666666555567788999999998 7899888777666555543333455655554
No 305
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.58 E-value=0.00017 Score=67.33 Aligned_cols=68 Identities=25% Similarity=0.276 Sum_probs=45.2
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.|. +.+.+.++.
T Consensus 135 ~LSgG~~qrv~la~al~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~~~~~g~til~~sH--~~~~~~~~~ 202 (303)
T TIGR01288 135 LLSGGMKRRLTLARALINDPQLLILDEPT-TGLDPHARHLIWERLRSLLARGKTILLTTH--FMEEAERLC 202 (303)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCCCEEEEECC--CHHHHHHhC
Confidence 35677777776666677889999999998 789988877766666554433344555544 444444443
No 306
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.58 E-value=0.00025 Score=63.62 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=44.0
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.|. +.+.+..+.
T Consensus 144 LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~vsH--~~~~~~~~~ 210 (236)
T cd03219 144 LSYGQQRRLEIARALATDPKLLLLDEPA-AGLNPEETEELAELIRELRERGITVLLVEH--DMDVVMSLA 210 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEec--CHHHHHHhC
Confidence 5666666666666667788999999998 789988877766666554433345555554 333444443
No 307
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.58 E-value=0.00056 Score=60.73 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=41.4
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEeccc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~ 160 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +.-+|+.|.-+
T Consensus 141 ~LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~ 202 (221)
T TIGR02211 141 ELSGGERQRVAIARALVNQPSLVLADEPT-GNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL 202 (221)
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 35666666666666667888999999998 789988877766666554332 34556655443
No 308
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=0.00028 Score=62.12 Aligned_cols=68 Identities=21% Similarity=0.342 Sum_probs=44.8
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +.-+|+.|. +.+.+..+.
T Consensus 128 ~LS~G~~qrv~ia~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH--~~~~~~~~~ 196 (211)
T cd03298 128 ELSGGERQRVALARVLVRDKPVLLLDEPF-AALDPALRAEMLDLVLDLHAETKMTVLMVTH--QPEDAKRLA 196 (211)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEec--CHHHHHhhh
Confidence 45677766666666667889999999998 789988877766666554322 344555544 444444443
No 309
>PRK08727 hypothetical protein; Validated
Probab=97.58 E-value=0.00054 Score=61.26 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=23.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEec
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~ 55 (432)
+.+++.||+|+|||.++..+..... ..+.++.++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~-~~~~~~~y~ 75 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAE-QAGRSSAYL 75 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEE
Confidence 4689999999999977766655433 234456655
No 310
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.58 E-value=0.00032 Score=71.90 Aligned_cols=142 Identities=21% Similarity=0.261 Sum_probs=82.5
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHH-HH---HHH---hCCccCCeeeeee----
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVAR-RV---AQE---LGVRLGEEVGYAI---- 85 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~-~~---~~~---~~~~~~~~~g~~~---- 85 (432)
+.+|+.+.|+|++||||||++..++....+..|...+--.|...+..+..+ .+ .+. ++.++...+.+..
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~ 445 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQY 445 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCC
Confidence 468999999999999999999999888776655444433444333222111 11 000 0000000000000
Q ss_pred ee------------c---ccCCCCceE------EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHH
Q 014006 86 RF------------E---DRTSERTLI------KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (432)
Q Consensus 86 ~~------------~---~~~~~~~~i------~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~ 144 (432)
.. + .....+-+. .-.+.|...+..+.+..+++.+++|+||+- ..+|.+....+.+.+.
T Consensus 446 ~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEpt-saLD~~t~~~i~~~l~ 524 (582)
T PRK11176 446 SREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT-SALDTESERAIQAALD 524 (582)
T ss_pred CHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcc-ccCCHHHHHHHHHHHH
Confidence 00 0 000001111 125778888777777778889999999998 7889888777666666
Q ss_pred hhhcCCcEEEEEeccc
Q 014006 145 NLRASKLKILITSATL 160 (432)
Q Consensus 145 ~~~~~~~~ii~~SAT~ 160 (432)
...+ +.-+|+.|.-+
T Consensus 525 ~~~~-~~tvI~VtHr~ 539 (582)
T PRK11176 525 ELQK-NRTSLVIAHRL 539 (582)
T ss_pred HHhC-CCEEEEEecch
Confidence 5543 36677777654
No 311
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=0.00097 Score=59.67 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=43.1
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSAT 159 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT 159 (432)
.-.+.|...+..+....+.+.+++++||.. ..+|......+.+.+...... +..+|+.|--
T Consensus 129 ~~lS~G~~qrl~laral~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~ 190 (232)
T cd03300 129 SQLSGGQQQRVAIARALVNEPKVLLLDEPL-GALDLKLRKDMQLELKRLQKELGITFVFVTHD 190 (232)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 345677777777666677889999999999 789998877766666554432 3556666544
No 312
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=0.00021 Score=63.05 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=45.1
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|. +.+.+.++.
T Consensus 130 ~LSgG~~qrl~la~al~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH--~~~~~~~~~ 198 (213)
T cd03259 130 ELSGGQQQRVALARALAREPSLLLLDEPL-SALDAKLREELREELKELQRELGITTIYVTH--DQEEALALA 198 (213)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEec--CHHHHHHhc
Confidence 35677777777666677889999999998 789988877766666554332 344555444 434444443
No 313
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.57 E-value=0.00034 Score=61.71 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=45.8
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
--.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +.-+|+.|. +.+.+..+.
T Consensus 129 ~~LS~G~~qr~~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH--~~~~~~~~~ 198 (213)
T cd03301 129 KQLSGGQRQRVALGRAIVREPKVFLMDEPL-SNLDAKLRVQMRAELKRLQQRLGTTTIYVTH--DQVEAMTMA 198 (213)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHhc
Confidence 346777777776666667788999999998 789998877766666554432 345555554 334444443
No 314
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.56 E-value=0.0006 Score=60.78 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=21.2
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.++.+++.||+|+|||+++..+....
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999998887776544
No 315
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.56 E-value=0.00021 Score=72.23 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=33.5
Q ss_pred EEEEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHH
Q 014006 22 VVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVS 64 (432)
Q Consensus 22 ~~ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q 64 (432)
++=|.+.||+||| +++..+...+.+.+-.+.++++|+.+.-.-
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeG 119 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEG 119 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhh
Confidence 6778899999999 777777776666666788899998765443
No 316
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.56 E-value=0.00032 Score=71.19 Aligned_cols=143 Identities=17% Similarity=0.139 Sum_probs=79.0
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHH-H---HH---HhCCccCCee--ee-eee
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR-V---AQ---ELGVRLGEEV--GY-AIR 86 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~-~---~~---~~~~~~~~~~--g~-~~~ 86 (432)
+.+|+.+.+.||+||||||++..+.....+..|...+--.+.+.......++ + .+ .+..++...+ +. ...
T Consensus 341 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~ 420 (544)
T TIGR01842 341 LQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENAD 420 (544)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCC
Confidence 5689999999999999999999888877665554332222222211111000 0 00 0000000000 00 000
Q ss_pred ec----------------c-----cCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 87 FE----------------D-----RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 87 ~~----------------~-----~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
.+ . ...-.....-.+.|...+..+.+..+.+.+++|+||+- ..+|......+.+.+..
T Consensus 421 ~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpt-s~LD~~~~~~i~~~l~~ 499 (544)
T TIGR01842 421 PEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPN-SNLDEEGEQALANAIKA 499 (544)
T ss_pred HHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cccCHHHHHHHHHHHHH
Confidence 00 0 00000112235778888888777788899999999998 78888877776666655
Q ss_pred hhcCCcEEEEEeccc
Q 014006 146 LRASKLKILITSATL 160 (432)
Q Consensus 146 ~~~~~~~ii~~SAT~ 160 (432)
....+..+|+.|.-+
T Consensus 500 ~~~~~~tvi~ith~~ 514 (544)
T TIGR01842 500 LKARGITVVVITHRP 514 (544)
T ss_pred HhhCCCEEEEEeCCH
Confidence 432335566666554
No 317
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.0004 Score=66.50 Aligned_cols=318 Identities=14% Similarity=0.081 Sum_probs=171.8
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHH-------HHHHHHHhhc----------C------------------CC
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKS-------TQLSQILHRH----------G------------------YT 47 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT-------~~~~~~~~~~----------~------------------~~ 47 (432)
+.|+.+.|.+++....+-++++. |++|-|. +++-.+.... . .-
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y--~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~ 291 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLY--PTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGF 291 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhcc--ccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCC
Confidence 68999999999999999998754 6665444 2222221110 0 01
Q ss_pred CCcEEEecccchhhhHHHHHHHHHH-hCCccCCee--------e-eee------eec-----------ccCC--------
Q 014006 48 KSGIIGVTQPRRVAAVSVARRVAQE-LGVRLGEEV--------G-YAI------RFE-----------DRTS-------- 92 (432)
Q Consensus 48 ~~~~vl~~~P~~~l~~q~~~~~~~~-~~~~~~~~~--------g-~~~------~~~-----------~~~~-------- 92 (432)
...+|++++|+|+.|..+...+... .|..-+... | |+. ... ....
T Consensus 292 tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ 371 (698)
T KOG2340|consen 292 TRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLA 371 (698)
T ss_pred CCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHH
Confidence 1358999999999999998887665 333221110 0 110 000 0000
Q ss_pred ------------CCceEEEcCHHHHHHHHhc--CC-----CCCCCcEEEEeCCCcCCCCHHH--HHHHHHHHHhhhcCC-
Q 014006 93 ------------ERTLIKYLTDGVLLREILS--NP-----DLSPYSVIILDEAHERSLNTDI--LLGLVKRLVNLRASK- 150 (432)
Q Consensus 93 ------------~~~~i~v~T~~~l~~~l~~--~~-----~l~~~~~vViDE~h~~~~~~~~--~~~~l~~~~~~~~~~- 150 (432)
-.++|+||+|=-|...+-+ +. .++.+.++|||-+| .++...+ ++.+...+- ..|.+
T Consensus 372 ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~-~~l~QNwEhl~~ifdHLn-~~P~k~ 449 (698)
T KOG2340|consen 372 FTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQAD-IMLMQNWEHLLHIFDHLN-LQPSKQ 449 (698)
T ss_pred HHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHH-HHHHhhHHHHHHHHHHhh-cCcccc
Confidence 1479999999665544431 11 68899999999999 2322222 232222221 12211
Q ss_pred --------------------cEEEEEecccChHH---HHhhccC-------CCeeec---CCCCCceeEEeCCCCC---c
Q 014006 151 --------------------LKILITSATLDGEK---VSKFFSN-------CPTLNV---PGKLYPVEILHSKERP---T 194 (432)
Q Consensus 151 --------------------~~ii~~SAT~~~~~---~~~~~~~-------~~~i~~---~~~~~~~~~~~~~~~~---~ 194 (432)
.|.+++|+-..+.. +..+..| .+++.. ..-.+|+...++.... .
T Consensus 450 h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~ 529 (698)
T KOG2340|consen 450 HDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSII 529 (698)
T ss_pred cCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcc
Confidence 46677776554331 2222211 111110 1111222222221111 1
Q ss_pred chHHHHHHH----HHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCC
Q 014006 195 SYLESALKT----AIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPP 270 (432)
Q Consensus 195 ~~~~~~~~~----~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~ 270 (432)
...+..++. ++-.+.......+||+.|+--+--++-.++++. .+....+|---+.+.-.++-+-|-
T Consensus 530 ~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e----------~i~F~~i~EYssk~~vsRAR~lF~ 599 (698)
T KOG2340|consen 530 ETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKE----------EISFVMINEYSSKSKVSRARELFF 599 (698)
T ss_pred cCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhh----------hcchHHHhhhhhHhhhhHHHHHHH
Confidence 111112211 111112233457899999999888888888875 222222221111222223334467
Q ss_pred CCccEEEEeecCc--ccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC-----CCeEEEe
Q 014006 271 PNCRRFIVSTNIA--ETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR-----PGKCYRL 343 (432)
Q Consensus 271 ~g~~~ilvaT~~~--~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~-----~G~~~~l 343 (432)
.|...+++-|.=+ -+--+|.+|+-||.|+.|..+. =+++.+.+.+|+--.+ .-.|-.|
T Consensus 600 qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~---------------FYsEiinm~~k~~~~gn~d~d~~t~~il 664 (698)
T KOG2340|consen 600 QGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPH---------------FYSEIINMSDKTTSQGNTDLDIFTVRIL 664 (698)
T ss_pred hcCceEEEEehhhhhhhhheecceeeEEEecCCCCcH---------------HHHHHHhhhhhhhccCCccccceEEEEE
Confidence 7889999998643 4567899999999988777655 4457888888874332 2457778
Q ss_pred cCccch
Q 014006 344 YPSTVY 349 (432)
Q Consensus 344 ~~~~~~ 349 (432)
|++-+.
T Consensus 665 ytKyD~ 670 (698)
T KOG2340|consen 665 YTKYDR 670 (698)
T ss_pred eechhh
Confidence 876554
No 318
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.56 E-value=0.00025 Score=74.20 Aligned_cols=142 Identities=19% Similarity=0.212 Sum_probs=81.6
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHH-H---H---HHhCCccCCeeeee---ee
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR-V---A---QELGVRLGEEVGYA---IR 86 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~-~---~---~~~~~~~~~~~g~~---~~ 86 (432)
+.+|+.+.|+|++||||||++..++.......|...+--.|.+....+..++ + . ..++.++.....+. ..
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~ 567 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYAD 567 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCC
Confidence 5679999999999999999999888877666554443333433322211111 0 0 00000000000000 00
Q ss_pred ------------ec---ccCCCCceE------EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 87 ------------FE---DRTSERTLI------KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 87 ------------~~---~~~~~~~~i------~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
.+ .....+-+- .-.+.|+..+..+.+..+.+.+++|+||+- ..+|......+.+.+..
T Consensus 568 ~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~T-s~LD~~te~~i~~~l~~ 646 (694)
T TIGR03375 568 DEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPT-SAMDNRSEERFKDRLKR 646 (694)
T ss_pred HHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHH
Confidence 00 000000111 125788888887777788899999999998 78999888877777666
Q ss_pred hhcCCcEEEEEeccc
Q 014006 146 LRASKLKILITSATL 160 (432)
Q Consensus 146 ~~~~~~~ii~~SAT~ 160 (432)
..+ +..+|..|.-+
T Consensus 647 ~~~-~~T~iiItHrl 660 (694)
T TIGR03375 647 WLA-GKTLVLVTHRT 660 (694)
T ss_pred HhC-CCEEEEEecCH
Confidence 554 35566666544
No 319
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.56 E-value=0.0012 Score=60.56 Aligned_cols=67 Identities=22% Similarity=0.312 Sum_probs=43.7
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|. +.+.+..+.
T Consensus 143 LSgG~~qrv~laraL~~~p~llllDEPt-~~LD~~~~~~l~~~L~~~~~~g~tviivsH--~~~~~~~~~ 209 (272)
T PRK15056 143 LSGGQKKRVFLARAIAQQGQVILLDEPF-TGVDVKTEARIISLLRELRDEGKTMLVSTH--NLGSVTEFC 209 (272)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeC--CHHHHHHhC
Confidence 5666666666655567788999999998 789988877766665554433345555554 434444443
No 320
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=0.00017 Score=66.79 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=46.4
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
+--.+.|...+..+....+.+.+++++||.- ..+|......+++.+......+..+|+.|. +.+.+..+.
T Consensus 142 ~~~LSgGqkqrvaiA~aL~~~p~illLDEPt-~gLD~~~~~~l~~~l~~l~~~g~til~vtH--d~~~~~~~~ 211 (288)
T PRK13643 142 PFELSGGQMRRVAIAGILAMEPEVLVLDEPT-AGLDPKARIEMMQLFESIHQSGQTVVLVTH--LMDDVADYA 211 (288)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEEec--CHHHHHHhC
Confidence 3446777777777766677888999999998 789988877766655444333345555554 444444444
No 321
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.54 E-value=0.0003 Score=62.65 Aligned_cols=63 Identities=17% Similarity=0.113 Sum_probs=43.8
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEeccc
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~ 160 (432)
+.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+.....+ +..+|+.|...
T Consensus 135 ~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~ 198 (225)
T PRK10247 135 IAELSGGEKQRISLIRNLQFMPKVLLLDEIT-SALDESNKHNVNEIIHRYVREQNIAVLWVTHDK 198 (225)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCh
Confidence 4446777777777666678889999999997 788888877655555554322 35667766544
No 322
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.0002 Score=67.13 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=43.3
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|..+
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPt-sgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~ 236 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPT-AGLDPKGEHEMMQLILDAKANNKTVFVITHTM 236 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 35677777777666678889999999998 78999887776666655433345566665544
No 323
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.54 E-value=0.00039 Score=65.71 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=45.6
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|+..+..+......+.+++++||+- ..+|......+++.+.....+ +..+|+.|. +.+.+.++.
T Consensus 141 LSgGqkQRV~IARAL~~~P~iLLlDEPt-s~LD~~t~~~i~~lL~~l~~~~g~tiiliTH--~~~~v~~~~ 208 (343)
T TIGR02314 141 LSGGQKQRVAIARALASNPKVLLCDEAT-SALDPATTQSILELLKEINRRLGLTILLITH--EMDVVKRIC 208 (343)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC--CHHHHHHhC
Confidence 4666666666666667888999999998 789998877766666554432 355666554 444455554
No 324
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.54 E-value=0.00036 Score=62.70 Aligned_cols=61 Identities=18% Similarity=0.277 Sum_probs=42.6
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+..... +..+|+.|..+
T Consensus 137 ~~LSgG~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~ 197 (237)
T cd03252 137 AGLSGGQRQRIAIARALIHNPRILIFDEAT-SALDYESEHAIMRNMHDICA-GRTVIIIAHRL 197 (237)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH
Confidence 345667666666666667788999999998 78999888876666665543 45556655443
No 325
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.54 E-value=0.00034 Score=61.68 Aligned_cols=149 Identities=13% Similarity=0.094 Sum_probs=74.8
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEE-Eecc--cc--------hhhhHHHHHHHHHHhCCccCCeeeeee
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-GVTQ--PR--------RVAAVSVARRVAQELGVRLGEEVGYAI 85 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~v-l~~~--P~--------~~l~~q~~~~~~~~~~~~~~~~~g~~~ 85 (432)
+.+|+.+.+.||+||||||++..++.......|... +.-. +. ..-+.+....+....+...........
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~ 89 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCY 89 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 568999999999999999999988887655555432 1110 00 000111111111111100000000000
Q ss_pred eecc-cCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHH
Q 014006 86 RFED-RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEK 164 (432)
Q Consensus 86 ~~~~-~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~ 164 (432)
.... ....+..+--.+.|+..+..+....+.+..++++||.- ..+|......+...+...... .-+|+. |.+...
T Consensus 90 ~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~-~~lD~~~~~~~~~~l~~~~~~-~~ii~v--sH~~~~ 165 (213)
T PRK15177 90 QLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKL-YTGDNATQLRMQAALACQLQQ-KGLIVL--THNPRL 165 (213)
T ss_pred HHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCC-ccCCHHHHHHHHHHHHHHhhC-CcEEEE--ECCHHH
Confidence 0000 00011233345777777766666677889999999975 456777666555545443322 234444 444444
Q ss_pred HHhhc
Q 014006 165 VSKFF 169 (432)
Q Consensus 165 ~~~~~ 169 (432)
+..+.
T Consensus 166 ~~~~~ 170 (213)
T PRK15177 166 IKEHC 170 (213)
T ss_pred HHHhc
Confidence 44443
No 326
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=0.00025 Score=63.81 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=42.1
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEeccc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~ 160 (432)
-.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+...... +.-+|+.|.-+
T Consensus 136 ~LS~G~~qrl~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~ 197 (239)
T cd03296 136 QLSGGQRQRVALARALAVEPKVLLLDEPF-GALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ 197 (239)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 35677777776666677788999999998 789988877766666554332 34555655543
No 327
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.53 E-value=0.0012 Score=70.54 Aligned_cols=122 Identities=19% Similarity=0.207 Sum_probs=79.5
Q ss_pred CchhhhHHHHHHHHh-cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeee
Q 014006 4 LPILQYEETIVETVE-QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (432)
Q Consensus 4 lp~~~~q~~i~~~i~-~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g 82 (432)
+.+..-|.+++..+. .++..+|+|+-|+||||++..+..... ..+.+++.+.|+--.+..+. +..|...
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e-~~G~~V~g~ApTgkAA~~L~----e~~Gi~a----- 449 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWE-AAGYRVVGGALAGKAAEGLE----KEAGIQS----- 449 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEEcCcHHHHHHHH----HhhCCCe-----
Confidence 457788888888774 577899999999999988877655332 34568888899877665543 3333211
Q ss_pred eeeeecccCCCCceEEEcCHHHHH-HHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 83 YAIRFEDRTSERTLIKYLTDGVLL-REILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 83 ~~~~~~~~~~~~~~i~v~T~~~l~-~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
.|-..++ ..-.....+..-++|||||+. |++...+..+++.+.. .+.++|++.
T Consensus 450 -----------------~TIas~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~~---~garvVLVG 503 (1102)
T PRK13826 450 -----------------RTLSSWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAVTR---AGAKLVLVG 503 (1102)
T ss_pred -----------------eeHHHHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHHHh---cCCEEEEEC
Confidence 1111211 110112245667899999998 8888877776655532 247788776
No 328
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.53 E-value=0.0013 Score=57.46 Aligned_cols=139 Identities=15% Similarity=0.171 Sum_probs=75.8
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcE-----EEecccchhhh-HHHHHHH--------------HHHhCCc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----IGVTQPRRVAA-VSVARRV--------------AQELGVR 76 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~-----vl~~~P~~~l~-~q~~~~~--------------~~~~~~~ 76 (432)
+.+|+.+.|.||+||||||++..+........|.. +.++.....+. ..+.+.+ .+..+.
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l- 106 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACAL- 106 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCc-
Confidence 56899999999999999999998888766555432 23322111110 0011110 000000
Q ss_pred cCCeeeeee-eecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh-hhcCCcEEE
Q 014006 77 LGEEVGYAI-RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN-LRASKLKIL 154 (432)
Q Consensus 77 ~~~~~g~~~-~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~-~~~~~~~ii 154 (432)
...+.... ..+.. ......-.+.|...+..+......+.+++++||.- ..+|.+....+...++. ....+.-+|
T Consensus 107 -~~~~~~~~~~~~~~--~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~ll~~~~~~~~tvi 182 (204)
T cd03250 107 -EPDLEILPDGDLTE--IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPL-SAVDAHVGRHIFENCILGLLLNNKTRI 182 (204)
T ss_pred -HHHHHhccCcccce--ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHHhccCCCEEE
Confidence 00000000 00000 01112235778877777777778889999999998 78888877766664443 222234556
Q ss_pred EEeccc
Q 014006 155 ITSATL 160 (432)
Q Consensus 155 ~~SAT~ 160 (432)
+.|..+
T Consensus 183 ~~sh~~ 188 (204)
T cd03250 183 LVTHQL 188 (204)
T ss_pred EEeCCH
Confidence 665543
No 329
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.53 E-value=0.0018 Score=57.62 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=42.2
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|.-
T Consensus 148 ~~LS~G~~qrl~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~ 208 (224)
T TIGR02324 148 ATFSGGEQQRVNIARGFIADYPILLLDEPT-ASLDAANRQVVVELIAEAKARGAALIGIFHD 208 (224)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 335677766666666667788999999998 7888888777666665544334556666554
No 330
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.53 E-value=0.00065 Score=59.60 Aligned_cols=142 Identities=18% Similarity=0.110 Sum_probs=74.9
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhH-HHHHHH---HHH---hCCccCCeeeee--eee
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRV---AQE---LGVRLGEEVGYA--IRF 87 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~-q~~~~~---~~~---~~~~~~~~~g~~--~~~ 87 (432)
+.+|+.+.|.||+||||||++..+........|...+--.+...... +..+.+ .+. +..++....... ...
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~ 110 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSD 110 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCCCH
Confidence 46899999999999999999998887765544433222111110000 000000 000 000000000000 000
Q ss_pred c---ccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 88 E---DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 88 ~---~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
. ..........-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+..... +.-+|+.|..+
T Consensus 111 ~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~th~~ 184 (207)
T cd03369 111 EEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEAT-ASIDYATDALIQKTIREEFT-NSTILTIAHRL 184 (207)
T ss_pred HHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH
Confidence 0 000011223345677776666666667888999999998 78888887765555555432 35566655543
No 331
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=0.00033 Score=64.39 Aligned_cols=68 Identities=19% Similarity=0.171 Sum_probs=45.5
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.|. +.+.+.++.
T Consensus 138 ~LSgG~~qrv~laraL~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~g~tili~tH--~~~~~~~~~ 205 (274)
T PRK13647 138 HLSYGQKKRVAIAGVLAMDPDVIVLDEPM-AYLDPRGQETLMEILDRLHNQGKTVIVATH--DVDLAAEWA 205 (274)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHhC
Confidence 35677777666666677889999999998 788888877766666554433355555554 444444444
No 332
>PRK06921 hypothetical protein; Provisional
Probab=97.52 E-value=0.0025 Score=58.03 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=27.9
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ 56 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~ 56 (432)
.+.++++.|++|+|||.++..++.......+..++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 46789999999999998887777655433255666654
No 333
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.52 E-value=0.00037 Score=62.72 Aligned_cols=153 Identities=19% Similarity=0.225 Sum_probs=81.9
Q ss_pred HHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEeccc---chhhhHHHHHH-------HHHHhCCccCCeee
Q 014006 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP---RRVAAVSVARR-------VAQELGVRLGEEVG 82 (432)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P---~~~l~~q~~~~-------~~~~~~~~~~~~~g 82 (432)
+--.|.+|+.+.+.||+||||||++..|+.......|...+--.+ ...+. ...++ .+-+...++..++.
T Consensus 21 i~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~-~~~R~VGfvFQ~YALF~HmtVa~NIA 99 (345)
T COG1118 21 ISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA-VRDRKVGFVFQHYALFPHMTVADNIA 99 (345)
T ss_pred ceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc-hhhcceeEEEechhhcccchHHhhhh
Confidence 333467999999999999999999998888776665544433321 11111 11111 12222334444444
Q ss_pred eeeeecccCCCCceE---------------------EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHH
Q 014006 83 YAIRFEDRTSERTLI---------------------KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVK 141 (432)
Q Consensus 83 ~~~~~~~~~~~~~~i---------------------~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~ 141 (432)
++.+......+...+ .=.+.|+-.+..+.+.......++.+||.- ..+|......+-+
T Consensus 100 FGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf-~ALDa~vr~~lr~ 178 (345)
T COG1118 100 FGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPF-GALDAKVRKELRR 178 (345)
T ss_pred hcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCc-hhhhHHHHHHHHH
Confidence 333222111110000 012334444444444455677899999987 7888887666444
Q ss_pred HHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 142 RLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 142 ~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
++.+.... +.-.++.|. +.++..+..
T Consensus 179 wLr~~~~~~~~ttvfVTH--D~eea~~la 205 (345)
T COG1118 179 WLRKLHDRLGVTTVFVTH--DQEEALELA 205 (345)
T ss_pred HHHHHHHhhCceEEEEeC--CHHHHHhhc
Confidence 44443332 455666654 544444443
No 334
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.52 E-value=0.00037 Score=71.12 Aligned_cols=140 Identities=21% Similarity=0.218 Sum_probs=78.4
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHH---------------HHHHhCCccCCe-
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR---------------VAQELGVRLGEE- 80 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~---------------~~~~~~~~~~~~- 80 (432)
+.+|+.+.|.||+||||||++..+.....+..|...+--.|......+..+. +.+.. ..+..
T Consensus 338 i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni--~~~~~~ 415 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNI--ALGRPD 415 (569)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHH--hcCCCC
Confidence 5689999999999999999999888877665554333333332221111110 00000 00000
Q ss_pred eee--------eeeec---ccCCCCce------EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHH
Q 014006 81 VGY--------AIRFE---DRTSERTL------IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (432)
Q Consensus 81 ~g~--------~~~~~---~~~~~~~~------i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~ 143 (432)
... ....+ .....+.+ -.-.+.|...+..+.+..+.+.+++++||+- ..+|......+.+.+
T Consensus 416 ~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt-s~LD~~~~~~i~~~l 494 (569)
T PRK10789 416 ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL-SAVDGRTEHQILHNL 494 (569)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc-ccCCHHHHHHHHHHH
Confidence 000 00000 00000001 1125677777777777788899999999998 789998877777766
Q ss_pred HhhhcCCcEEEEEeccc
Q 014006 144 VNLRASKLKILITSATL 160 (432)
Q Consensus 144 ~~~~~~~~~ii~~SAT~ 160 (432)
....+ +.-+|+.|.-+
T Consensus 495 ~~~~~-~~tii~itH~~ 510 (569)
T PRK10789 495 RQWGE-GRTVIISAHRL 510 (569)
T ss_pred HHHhC-CCEEEEEecch
Confidence 65543 34555555433
No 335
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00055 Score=57.13 Aligned_cols=138 Identities=20% Similarity=0.191 Sum_probs=76.6
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeee----eeeeec----
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG----YAIRFE---- 88 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g----~~~~~~---- 88 (432)
+..|+.+.|.||+|+|||+++..+.....+..|..-+--.|......+..+. .-++|...|...- ....+.
T Consensus 25 l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~-l~yLGH~~giK~eLTa~ENL~F~~~~~ 103 (209)
T COG4133 25 LNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQA-LLYLGHQPGIKTELTALENLHFWQRFH 103 (209)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHH-HHHhhccccccchhhHHHHHHHHHHHh
Confidence 5688999999999999999999888877655543333335544333322111 1122211111100 000000
Q ss_pred ----------------ccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcE
Q 014006 89 ----------------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (432)
Q Consensus 89 ----------------~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (432)
-.-..+..+-..+.|+-.+..+.+-+++.-.+-|+||.- ..+|..-... +..+....-..-=
T Consensus 104 ~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~-taLDk~g~a~-l~~l~~~H~~~GG 181 (209)
T COG4133 104 GSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPF-TALDKEGVAL-LTALMAAHAAQGG 181 (209)
T ss_pred CCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcc-cccCHHHHHH-HHHHHHHHhcCCC
Confidence 000123445557788887777777788889999999987 5677655443 3333332222123
Q ss_pred EEEEe
Q 014006 153 ILITS 157 (432)
Q Consensus 153 ii~~S 157 (432)
+|++|
T Consensus 182 iVllt 186 (209)
T COG4133 182 IVLLT 186 (209)
T ss_pred EEEEe
Confidence 55554
No 336
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.51 E-value=0.00024 Score=63.70 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=44.8
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +.-+|+.| .+.+.+..+.
T Consensus 153 ~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiiivs--H~~~~~~~~~ 221 (236)
T cd03267 153 QLSLGQRMRAEIAAALLHEPEILFLDEPT-IGLDVVAQENIRNFLKEYNRERGTTVLLTS--HYMKDIEALA 221 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCC-CCCCHHHHHHHHHHHHHHHhcCCCEEEEEe--cCHHHHHHhC
Confidence 35677776666666677788999999998 789998888766666654332 23444444 3444444443
No 337
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00025 Score=64.41 Aligned_cols=144 Identities=18% Similarity=0.204 Sum_probs=75.1
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEE-------------ecccchhhh--HHHHHHHHHHhCC----c-
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-------------VTQPRRVAA--VSVARRVAQELGV----R- 76 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl-------------~~~P~~~l~--~q~~~~~~~~~~~----~- 76 (432)
+.+|+.+.|.||+||||||++..+........|...+ ++.....+. ..+.+.+.-.... .
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~ 114 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAA 114 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHH
Confidence 5689999999999999999999888776544432211 111000000 0000000000000 0
Q ss_pred --cCCeeeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc-CCcEE
Q 014006 77 --LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKI 153 (432)
Q Consensus 77 --~~~~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~-~~~~i 153 (432)
.-...|. .. ..+..+--.+.|...+..+....+.+.+++++||.- ..+|......+.+.+..... .+..+
T Consensus 115 ~~~l~~~gl----~~--~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~~~~~tv 187 (257)
T PRK11247 115 LQALAAVGL----AD--RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL-GALDALTRIEMQDLIESLWQQHGFTV 187 (257)
T ss_pred HHHHHHcCC----hh--HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 0000000 00 001222335666666666666567788999999998 78888887766555554432 23455
Q ss_pred EEEecccChHHHHhhc
Q 014006 154 LITSATLDGEKVSKFF 169 (432)
Q Consensus 154 i~~SAT~~~~~~~~~~ 169 (432)
|+.|. +.+.+..+.
T Consensus 188 iivsH--d~~~~~~~~ 201 (257)
T PRK11247 188 LLVTH--DVSEAVAMA 201 (257)
T ss_pred EEEeC--CHHHHHHhC
Confidence 55554 333344443
No 338
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.51 E-value=0.0004 Score=70.30 Aligned_cols=142 Identities=22% Similarity=0.204 Sum_probs=82.0
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHH-HH---HH---HhCCccCCeeeee---ee
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVAR-RV---AQ---ELGVRLGEEVGYA---IR 86 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~-~~---~~---~~~~~~~~~~g~~---~~ 86 (432)
+.+|+.+.++||+||||||++..+........|...+--.|.+..-.+-.+ .+ .+ .++.++.....+. ..
T Consensus 345 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~ 424 (529)
T TIGR02857 345 VPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDAS 424 (529)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCC
Confidence 568999999999999999999999887766655444444444333221111 11 00 0000000000000 00
Q ss_pred ec---------------ccCCCCc------eEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 87 FE---------------DRTSERT------LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 87 ~~---------------~~~~~~~------~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
.+ .....+- .-.-.+.|...+....+..+++.+++++||+- ..+|.+....+.+.+..
T Consensus 425 ~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~t-s~lD~~~~~~i~~~l~~ 503 (529)
T TIGR02857 425 DAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPT-AHLDAETEALVTEALRA 503 (529)
T ss_pred HHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcc-cccCHHHHHHHHHHHHH
Confidence 00 0000000 11125677777777777788899999999998 78999888887777766
Q ss_pred hhcCCcEEEEEeccc
Q 014006 146 LRASKLKILITSATL 160 (432)
Q Consensus 146 ~~~~~~~ii~~SAT~ 160 (432)
..+ +.-+|..|.-+
T Consensus 504 ~~~-~~t~i~itH~~ 517 (529)
T TIGR02857 504 LAQ-GRTVLLVTHRL 517 (529)
T ss_pred hcC-CCEEEEEecCH
Confidence 543 35566666544
No 339
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.50 E-value=0.00037 Score=61.81 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=42.6
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc-CCcEEEEEeccc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~-~~~~ii~~SAT~ 160 (432)
.+.|...+..+......+.+++++||.. ..+|......+...+..... .+..+|+.|.-+
T Consensus 142 lS~G~~qrv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~ 202 (220)
T TIGR02982 142 LSGGQKQRVAIARALVHRPKLVLADEPT-AALDSKSGRDVVELMQKLAREQGCTILIVTHDN 202 (220)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 5677776666666677889999999998 78999887776666555443 235666666554
No 340
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.00047 Score=65.42 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=44.3
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+...... +.-+|+.|. +.+.+.++.
T Consensus 141 LSgGq~qRv~lAraL~~~p~iLlLDEPt-s~LD~~~~~~l~~~L~~l~~~~g~tiilvtH--~~~~i~~~~ 208 (343)
T PRK11153 141 LSGGQKQRVAIARALASNPKVLLCDEAT-SALDPATTRSILELLKDINRELGLTIVLITH--EMDVVKRIC 208 (343)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC--CHHHHHHhC
Confidence 5667766666666667788999999998 789988877766666554332 344555554 434444444
No 341
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.00029 Score=63.07 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=44.9
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.. ..+|......+.+.+...... +..+|+.|. +.+.+..+.
T Consensus 129 ~LS~G~~qrv~laral~~~p~lllLDEP~-~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH--~~~~~~~~~ 197 (232)
T PRK10771 129 QLSGGQRQRVALARCLVREQPILLLDEPF-SALDPALRQEMLTLVSQVCQERQLTLLMVSH--SLEDAARIA 197 (232)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEEC--CHHHHHHhC
Confidence 45677777666666677889999999998 789998877766666554332 344555443 444444444
No 342
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.50 E-value=0.0011 Score=60.70 Aligned_cols=69 Identities=20% Similarity=0.200 Sum_probs=46.1
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
--.+.|+..+..+....+.+..++++||.- ..+|......+.+.+...... +.-+|+.|. +.+.+..+.
T Consensus 148 ~~LS~G~~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tviivsH--~~~~~~~~~ 217 (267)
T PRK15112 148 HMLAPGQKQRLGLARALILRPKVIIADEAL-ASLDMSMRSQLINLMLELQEKQGISYIYVTQ--HLGMMKHIS 217 (267)
T ss_pred hhcCHHHHHHHHHHHHHHhCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHcCcEEEEEeC--CHHHHHHhc
Confidence 346778777777766677889999999998 789988877766666554332 344555444 444454444
No 343
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.50 E-value=0.00011 Score=66.09 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=46.3
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
.-.+.|+..+..+......+.+++++||.- ..+|......+.+.+.....+ +..+|+.|.- .+.+.++.
T Consensus 129 ~~lS~G~~qrl~laral~~~p~llllDEP~-~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~--~~~~~~~~ 198 (237)
T TIGR00968 129 NQLSGGQRQRVALARALAVEPQVLLLDEPF-GALDAKVRKELRSWLRKLHDEVHVTTVFVTHD--QEEAMEVA 198 (237)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC--HHHHHhhc
Confidence 345777777777666677888999999998 789998877766666654432 3456665543 33344443
No 344
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00044 Score=62.85 Aligned_cols=70 Identities=19% Similarity=0.260 Sum_probs=45.6
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
+.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|. +.+.+.++.
T Consensus 136 ~~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~l~~~~~tiii~tH--~~~~~~~~~ 205 (255)
T PRK11231 136 LTDLSGGQRQRAFLAMVLAQDTPVVLLDEPT-TYLDINHQVELMRLMRELNTQGKTVVTVLH--DLNQASRYC 205 (255)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEEC--CHHHHHHhc
Confidence 3445677777776666677888999999998 788888877766655544333345555554 333444443
No 345
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.49 E-value=0.0003 Score=61.11 Aligned_cols=143 Identities=20% Similarity=0.210 Sum_probs=73.5
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhh-------------------hHHHHHHHHHHhCCcc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA-------------------AVSVARRVAQELGVRL 77 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l-------------------~~q~~~~~~~~~~~~~ 77 (432)
+.+|+.+-+.||+|+||||.+..++.......|...+.-.|...- +.++...++..-|..-
T Consensus 25 v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~ 104 (300)
T COG4152 25 VPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPK 104 (300)
T ss_pred ecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcH
Confidence 568899999999999999988888888877666555544443222 2223333333322211
Q ss_pred CCee---e-eeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEE
Q 014006 78 GEEV---G-YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (432)
Q Consensus 78 ~~~~---g-~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~i 153 (432)
.... . |-.+++-.......|--.+-|.-...-.-...+++..++|+||.- ..+|+-....+-+.+...+..+.-+
T Consensus 105 ~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPF-SGLDPVN~elLk~~I~~lk~~GatI 183 (300)
T COG4152 105 AEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPF-SGLDPVNVELLKDAIFELKEEGATI 183 (300)
T ss_pred HHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCc-cCCChhhHHHHHHHHHHHHhcCCEE
Confidence 0000 0 000000000011112122222111111111146678899999988 6777766665444555555555555
Q ss_pred EEEeccc
Q 014006 154 LITSATL 160 (432)
Q Consensus 154 i~~SAT~ 160 (432)
|+.|.-+
T Consensus 184 ifSsH~M 190 (300)
T COG4152 184 IFSSHRM 190 (300)
T ss_pred EEecchH
Confidence 5555544
No 346
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.49 E-value=0.00042 Score=70.92 Aligned_cols=142 Identities=19% Similarity=0.232 Sum_probs=78.5
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHH-HH---HHH---hCCccCCeeeee---ee
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVAR-RV---AQE---LGVRLGEEVGYA---IR 86 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~-~~---~~~---~~~~~~~~~g~~---~~ 86 (432)
+.+|+.+.|.||+||||||++..++.......|...+--.+......+..+ .+ .+. +..++-....+. ..
T Consensus 358 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~ 437 (585)
T TIGR01192 358 AKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGAT 437 (585)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCC
Confidence 568999999999999999999988887766555433322232221111111 00 000 000000000000 00
Q ss_pred ------------ecc---cCCC------CceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 87 ------------FED---RTSE------RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 87 ------------~~~---~~~~------~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
.+. .... .....-.+.|...+..+.+..+.+.+++|+||+- ..+|.+....+.+.+..
T Consensus 438 ~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpt-s~LD~~~~~~i~~~l~~ 516 (585)
T TIGR01192 438 DEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEAT-SALDVETEARVKNAIDA 516 (585)
T ss_pred HHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc-cCCCHHHHHHHHHHHHH
Confidence 000 0000 0111225678877777777788899999999998 78999887776666655
Q ss_pred hhcCCcEEEEEeccc
Q 014006 146 LRASKLKILITSATL 160 (432)
Q Consensus 146 ~~~~~~~ii~~SAT~ 160 (432)
..+ +.-+|+.|.-+
T Consensus 517 ~~~-~~tvI~isH~~ 530 (585)
T TIGR01192 517 LRK-NRTTFIIAHRL 530 (585)
T ss_pred HhC-CCEEEEEEcCh
Confidence 543 35566665543
No 347
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.49 E-value=0.00032 Score=62.71 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=43.0
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|.. .+.+..+.
T Consensus 132 LS~G~~qrv~la~al~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~--~~~~~~~~ 199 (230)
T TIGR03410 132 LSGGQQQQLAIARALVTRPKLLLLDEPT-EGIQPSIIKDIGRVIRRLRAEGGMAILLVEQY--LDFARELA 199 (230)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCC--HHHHHHhC
Confidence 4556555555555567788999999998 789998877766666554432 3455555544 33344443
No 348
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.49 E-value=0.00057 Score=69.82 Aligned_cols=142 Identities=23% Similarity=0.239 Sum_probs=80.8
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHH-HH---H---HhCCccCCeeeeeeee--
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR-VA---Q---ELGVRLGEEVGYAIRF-- 87 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~-~~---~---~~~~~~~~~~g~~~~~-- 87 (432)
+.+|+.+.++|||||||||++..+........|...+--.+.+.....-.++ ++ + .++.++...+.++...
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at 431 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDAT 431 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCC
Confidence 6789999999999999999999888877665544333244444333222221 11 0 1111111111111000
Q ss_pred -c---------------ccCCCCceEEE------cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 88 -E---------------DRTSERTLIKY------LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 88 -~---------------~~~~~~~~i~v------~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
+ .....+.+-.+ .+.|+-.+....+..+.+..++|+|||. ..+|...-..+.+.+..
T Consensus 432 ~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaT-SalD~~tE~~I~~~l~~ 510 (567)
T COG1132 432 DEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEAT-SALDTETEALIQDALKK 510 (567)
T ss_pred HHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccc-cccCHHhHHHHHHHHHH
Confidence 0 00011122222 4567777777777778888999999999 78898887776676665
Q ss_pred hhcCCcEEEEEeccc
Q 014006 146 LRASKLKILITSATL 160 (432)
Q Consensus 146 ~~~~~~~ii~~SAT~ 160 (432)
..++ ..++..+.-+
T Consensus 511 l~~~-rT~iiIaHRl 524 (567)
T COG1132 511 LLKG-RTTLIIAHRL 524 (567)
T ss_pred HhcC-CEEEEEeccH
Confidence 4433 3445455443
No 349
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.49 E-value=0.00031 Score=63.25 Aligned_cols=60 Identities=23% Similarity=0.294 Sum_probs=40.0
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
-.+.|...+..+......+.+++++||.- ..+|......+.+.+......+..+|+.|..
T Consensus 137 ~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~ 196 (241)
T PRK10895 137 SLSGGERRRVEIARALAANPKFILLDEPF-AGVDPISVIDIKRIIEHLRDSGLGVLITDHN 196 (241)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEEcC
Confidence 35666666666666667888999999998 7888887766555554443333455555543
No 350
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00037 Score=63.88 Aligned_cols=62 Identities=26% Similarity=0.299 Sum_probs=43.2
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEeccc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~ 160 (432)
.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|..+
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~ 203 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLALNPSVIILDEAT-SMLDPDARQNLLDLVRKVKSEHNITIISITHDL 203 (269)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 346777777777666678889999999998 789998877766666554332 34556655543
No 351
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.0017 Score=54.68 Aligned_cols=149 Identities=20% Similarity=0.278 Sum_probs=79.3
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEE-----EecccchhhhHHHHHHHHHHhC----CccCCeeeeeee
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII-----GVTQPRRVAAVSVARRVAQELG----VRLGEEVGYAIR 86 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~v-----l~~~P~~~l~~q~~~~~~~~~~----~~~~~~~g~~~~ 86 (432)
.+.+|+.+.+.||+|+||||++..+........|... +--.|+++||..+. -+.+.-. .++-..++++--
T Consensus 23 ~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS-ILkQ~N~i~~rlTV~dLv~FGRf 101 (252)
T COG4604 23 DIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS-ILKQENHINSRLTVRDLVGFGRF 101 (252)
T ss_pred eecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH-HHHhhchhhheeEHHHHhhcCCC
Confidence 3568999999999999999998877776666555432 23457777775542 1222111 122222322111
Q ss_pred ecc--cCCC-Cce-----EEE-------------cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHH--
Q 014006 87 FED--RTSE-RTL-----IKY-------------LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL-- 143 (432)
Q Consensus 87 ~~~--~~~~-~~~-----i~v-------------~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~-- 143 (432)
..+ +... ... +-| .+.|+..+.+..-...++-++|.+||.= ..+|+..-.++.+.+
T Consensus 102 PYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPL-NNLDmkHsv~iMk~Lrr 180 (252)
T COG4604 102 PYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPL-NNLDMKHSVQIMKILRR 180 (252)
T ss_pred cccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcc-cccchHHHHHHHHHHHH
Confidence 111 1110 000 111 2223333333333356778999999986 678888755554444
Q ss_pred -HhhhcCCcEEEEEecccChHHHHhhccC
Q 014006 144 -VNLRASKLKILITSATLDGEKVSKFFSN 171 (432)
Q Consensus 144 -~~~~~~~~~ii~~SAT~~~~~~~~~~~~ 171 (432)
..... .-+++.=..+| ++.++.+
T Consensus 181 la~el~--KtiviVlHDIN---fAS~YsD 204 (252)
T COG4604 181 LADELG--KTIVVVLHDIN---FASCYSD 204 (252)
T ss_pred HHHHhC--CeEEEEEeccc---HHHhhhh
Confidence 44443 34555545555 5555543
No 352
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.48 E-value=0.00075 Score=56.47 Aligned_cols=150 Identities=21% Similarity=0.238 Sum_probs=78.3
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHH-------HHhCC----ccCCee---
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA-------QELGV----RLGEEV--- 81 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~-------~~~~~----~~~~~~--- 81 (432)
.+..|+.+.++||.|+||||++..+......+.|...+.-...--+.....-.+. +.+.. ++...+
T Consensus 24 ~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 24 HIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred eecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 3568999999999999999999988887766665444332221111000000010 00000 000000
Q ss_pred ----eeeeeec--------cc--CCCCceE--EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 82 ----GYAIRFE--------DR--TSERTLI--KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 82 ----g~~~~~~--------~~--~~~~~~i--~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
|.....- +. ...+.+. ...+.|.-.+........++..+++-||.- -.+|++.-..+++-+..
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPT-GNLDp~~s~~im~lfee 182 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPT-GNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCC-CCCChHHHHHHHHHHHH
Confidence 1000000 00 0000000 112344444555555567888999999998 67899987776666655
Q ss_pred hhcCCcEEEEEecccChHHHHhh
Q 014006 146 LRASKLKILITSATLDGEKVSKF 168 (432)
Q Consensus 146 ~~~~~~~ii~~SAT~~~~~~~~~ 168 (432)
....+.-+++ ||.+.+.+.++
T Consensus 183 inr~GtTVl~--ATHd~~lv~~~ 203 (223)
T COG2884 183 INRLGTTVLM--ATHDLELVNRM 203 (223)
T ss_pred HhhcCcEEEE--EeccHHHHHhc
Confidence 5433333333 67776666555
No 353
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.48 E-value=0.00017 Score=68.53 Aligned_cols=61 Identities=25% Similarity=0.333 Sum_probs=43.8
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccC
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~ 161 (432)
.+.|+..+..+......+.+++++||.- ..+|......+.+.+...... +..+|+.|..++
T Consensus 130 LSGGq~QRV~lARAL~~~p~iLLlDEP~-saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ 191 (363)
T TIGR01186 130 LSGGMQQRVGLARALAAEPDILLMDEAF-SALDPLIRDSMQDELKKLQATLQKTIVFITHDLD 191 (363)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 5677777777666677889999999998 789998877766666655432 345666665443
No 354
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.48 E-value=0.00047 Score=62.16 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=46.0
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
+.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+..... +..+|+.|.- .+.+.++.
T Consensus 141 ~~~LS~Ge~qrv~laral~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~--~~~~~~~~ 209 (242)
T TIGR03411 141 AGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV-AGMTDEETEKTAELLKSLAG-KHSVVVVEHD--MEFVRSIA 209 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc-cCCCHHHHHHHHHHHHHHhc-CCEEEEEECC--HHHHHHhC
Confidence 3345677777777666677889999999998 78999887776666555443 3455555543 33344443
No 355
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=0.0019 Score=59.85 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=47.2
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
+--.+.|+..+..+......+.+++++||.- ..+|......+++.+...... +..+|+.|. +.+.+..+.
T Consensus 143 ~~~LSgGq~qrv~lAraL~~~P~llllDEPt-~~LD~~~~~~l~~~L~~l~~~~g~tviiitH--d~~~~~~~~ 213 (290)
T PRK13634 143 PFELSGGQMRRVAIAGVLAMEPEVLVLDEPT-AGLDPKGRKEMMEMFYKLHKEKGLTTVLVTH--SMEDAARYA 213 (290)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC--CHHHHHHhC
Confidence 4446777777777766677889999999998 789998877766666554332 345555554 444455554
No 356
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=0.00049 Score=63.50 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=44.3
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEeccc
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~ 160 (432)
.--.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|.-+
T Consensus 141 ~~~LS~G~~qrv~laral~~~P~llllDEPt-~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~ 204 (282)
T PRK13640 141 PANLSGGQKQRVAIAGILAVEPKIIILDEST-SMLDPAGKEQILKLIRKLKKKNNLTVISITHDI 204 (282)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 3446677777777666678889999999998 789988877766666554332 35666666544
No 357
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=0.00022 Score=64.33 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=42.6
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.|. +.+.+.++.
T Consensus 141 ~LS~G~~qrv~laral~~~p~llilDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~sh--~~~~~~~~~ 208 (242)
T PRK11124 141 HLSGGQQQRVAIARALMMEPQVLLFDEPT-AALDPEITAQIVSIIRELAETGITQVIVTH--EVEVARKTA 208 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCC-CcCCHHHHHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHhc
Confidence 35566666666666667788999999998 788888877655555544332344454444 433444443
No 358
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.47 E-value=0.00063 Score=62.32 Aligned_cols=68 Identities=19% Similarity=0.182 Sum_probs=44.9
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|.- .+.+..+.
T Consensus 143 ~LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~--~~~~~~~~ 211 (269)
T PRK11831 143 ELSGGMARRAALARAIALEPDLIMFDEPF-VGQDPITMGVLVKLISELNSALGVTCVVVSHD--VPEVLSIA 211 (269)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC--HHHHHHhh
Confidence 35677766666666667788999999998 789988877766666554332 3456666553 33344443
No 359
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.47 E-value=0.0011 Score=64.49 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++|.||+|+|||+++..++...
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999998887777654
No 360
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.47 E-value=0.00052 Score=70.34 Aligned_cols=59 Identities=24% Similarity=0.266 Sum_probs=43.7
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.+.|...+..+.+..+++.+++++||+- ..+|......+.+.+....+ +..+|..|.-+
T Consensus 477 LSgGq~Qrl~laRal~~~~~ililDEpt-s~lD~~~~~~i~~~l~~~~~-~~t~IiitH~~ 535 (576)
T TIGR02204 477 LSGGQRQRIAIARAILKDAPILLLDEAT-SALDAESEQLVQQALETLMK-GRTTLIIAHRL 535 (576)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCcc-cccCHHHHHHHHHHHHHHhC-CCEEEEEecch
Confidence 5677777777777778889999999998 78888887766666665544 35666666554
No 361
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.46 E-value=0.00057 Score=61.05 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=45.1
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+......+.+++++||.- ..+|......+.+.+.....+ +.-+|+.|.- .+.+..+.
T Consensus 114 ~LSgG~~qrv~la~al~~~p~lllLDEPt-~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~--~~~~~~~~ 182 (230)
T TIGR01184 114 QLSGGMKQRVAIARALSIRPKVLLLDEPF-GALDALTRGNLQEELMQIWEEHRVTVLMVTHD--VDEALLLS 182 (230)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCC-cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC--HHHHHHhc
Confidence 35677777666666667788999999998 789988877766666554332 3445555544 33344443
No 362
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=0.00038 Score=62.55 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=43.1
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.| .+.+.+.++.
T Consensus 138 LS~G~~qrl~la~al~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~~~tiii~s--H~~~~~~~~~ 204 (237)
T PRK11614 138 MSGGEQQMLAIGRALMSQPRLLLLDEPS-LGLAPIIIQQIFDTIEQLREQGMTIFLVE--QNANQALKLA 204 (237)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEcCcc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEe--CcHHHHHhhC
Confidence 4566655555555567788999999998 78998887776666655443334455544 3444455544
No 363
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.46 E-value=0.0003 Score=67.77 Aligned_cols=143 Identities=20% Similarity=0.230 Sum_probs=76.1
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhh-HHHHHHH---HHHh----CCccCCee--e----
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRV---AQEL----GVRLGEEV--G---- 82 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~-~q~~~~~---~~~~----~~~~~~~~--g---- 82 (432)
+.+|+.+.+.||+||||||++..+........|...+.-.+...+. .+..+++ .+.. ..++...+ |
T Consensus 26 i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~ 105 (402)
T PRK09536 26 VREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPH 105 (402)
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchh
Confidence 4689999999999999999999988876655443333222211110 1111111 0000 00000000 0
Q ss_pred ---ee---eeeccc-----------CCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 83 ---YA---IRFEDR-----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 83 ---~~---~~~~~~-----------~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
+. ...... ...+..+--.+.|...+..+....+.+..++++||.- ..+|......+++.+..
T Consensus 106 ~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPt-sgLD~~~~~~l~~lL~~ 184 (402)
T PRK09536 106 RSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPT-ASLDINHQVRTLELVRR 184 (402)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHH
Confidence 00 000000 0011223335677777777666678889999999998 78888876665555554
Q ss_pred hhcCCcEEEEEeccc
Q 014006 146 LRASKLKILITSATL 160 (432)
Q Consensus 146 ~~~~~~~ii~~SAT~ 160 (432)
....+.-+|+.|.-+
T Consensus 185 l~~~g~TIIivsHdl 199 (402)
T PRK09536 185 LVDDGKTAVAAIHDL 199 (402)
T ss_pred HHhcCCEEEEEECCH
Confidence 433334555555443
No 364
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.46 E-value=0.00033 Score=60.34 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=28.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHH
Q 014006 23 VVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV 69 (432)
Q Consensus 23 ~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~ 69 (432)
++|.||+|+|||+++..++..... .+..++++. +.+...++.+++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-~g~~v~~~s-~e~~~~~~~~~~ 46 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVT-LEESPEELIENA 46 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-CCCcEEEEE-CCCCHHHHHHHH
Confidence 688999999999887777665443 344555553 234445554444
No 365
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.0016 Score=57.13 Aligned_cols=144 Identities=20% Similarity=0.229 Sum_probs=75.2
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecc----c--chhhhHHHHHHH---HHHhCCccCCeeeeeee
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ----P--RRVAAVSVARRV---AQELGVRLGEEVGYAIR 86 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~----P--~~~l~~q~~~~~---~~~~~~~~~~~~g~~~~ 86 (432)
.+.+|+.+.+.||+||||||++..+........|...+--. | .+..+-|.+.-+ .-.-+...+........
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~ 104 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSK 104 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccch
Confidence 46789999999999999999999998877665553322221 1 111222211100 00000000100000000
Q ss_pred ---------------ecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-C
Q 014006 87 ---------------FEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-K 150 (432)
Q Consensus 87 ---------------~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~ 150 (432)
.....+..+ --.+-|+-.+..+......+..++.+||.- -.+|.-....+-..++....+ +
T Consensus 105 ~e~~~~a~~~L~~VgL~~~~~~~P--~qLSGGMrQRVaiARAL~~~P~lLLlDEPF-gALDalTR~~lq~~l~~lw~~~~ 181 (248)
T COG1116 105 AEARERAKELLELVGLAGFEDKYP--HQLSGGMRQRVAIARALATRPKLLLLDEPF-GALDALTREELQDELLRLWEETR 181 (248)
T ss_pred HhHHHHHHHHHHHcCCcchhhcCc--cccChHHHHHHHHHHHHhcCCCEEEEcCCc-chhhHHHHHHHHHHHHHHHHhhC
Confidence 000000001 114667777777777778889999999987 556665544444444443322 3
Q ss_pred cEEEEEecccCh
Q 014006 151 LKILITSATLDG 162 (432)
Q Consensus 151 ~~ii~~SAT~~~ 162 (432)
.-+++.|..++.
T Consensus 182 ~TvllVTHdi~E 193 (248)
T COG1116 182 KTVLLVTHDVDE 193 (248)
T ss_pred CEEEEEeCCHHH
Confidence 556777665543
No 366
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=0.002 Score=59.57 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=46.4
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecccChHHHHhhc
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~-~~~~ii~~SAT~~~~~~~~~~ 169 (432)
+--.+.|...+..+......+.+++++||.- ..+|......+...+..... .+..+|+.|.- .+.+..+.
T Consensus 143 ~~~LSgGq~qrv~laraL~~~p~illlDEPt-~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~--~~~~~~~~ 213 (286)
T PRK13646 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPT-AGLDPQSKRQVMRLLKSLQTDENKTIILVSHD--MNEVARYA 213 (286)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC--HHHHHHhC
Confidence 4446777777777766677888999999998 78888887776555554432 23556665544 33344443
No 367
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.45 E-value=0.0021 Score=58.47 Aligned_cols=69 Identities=12% Similarity=0.172 Sum_probs=46.0
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
--.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|. +.+.+..+.
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~l~~~g~tiiivsH--~~~~~~~~~ 219 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPT-SALDPELVGEVLRIMQQLAEEGKTMVVVTH--EMGFARHVS 219 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEeC--CHHHHHHhc
Confidence 345677777666666677889999999998 789988877766655544333455666655 444444443
No 368
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.45 E-value=0.0003 Score=71.98 Aligned_cols=142 Identities=21% Similarity=0.229 Sum_probs=80.8
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHH-HH---HH---HhCCccCCeeeeee--ee
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVAR-RV---AQ---ELGVRLGEEVGYAI--RF 87 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~-~~---~~---~~~~~~~~~~g~~~--~~ 87 (432)
+.+|+.+.|.|++||||||++..++.......|...+--.+....-..-.+ .+ .+ .+..++-..+.+.. ..
T Consensus 355 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~ 434 (571)
T TIGR02203 355 IEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQA 434 (571)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCC
Confidence 568999999999999999999999887766555433332222221111111 00 00 00000000000000 00
Q ss_pred --------------c---ccCCCCceE------EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHH
Q 014006 88 --------------E---DRTSERTLI------KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (432)
Q Consensus 88 --------------~---~~~~~~~~i------~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~ 144 (432)
+ .....+-+- .-.+.|...+..+.+..+.+.+++++||+- ..+|.+....+.+.+.
T Consensus 435 ~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpt-s~LD~~~~~~i~~~L~ 513 (571)
T TIGR02203 435 DRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEAT-SALDNESERLVQAALE 513 (571)
T ss_pred CHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHH
Confidence 0 000000111 125788888888777788899999999998 7899988888777776
Q ss_pred hhhcCCcEEEEEeccc
Q 014006 145 NLRASKLKILITSATL 160 (432)
Q Consensus 145 ~~~~~~~~ii~~SAT~ 160 (432)
...+. .-+|..|...
T Consensus 514 ~~~~~-~tiIiitH~~ 528 (571)
T TIGR02203 514 RLMQG-RTTLVIAHRL 528 (571)
T ss_pred HHhCC-CEEEEEehhh
Confidence 65443 5566666543
No 369
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.00065 Score=62.24 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=45.1
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +.-+|+.|. +.+.+..+.
T Consensus 160 ~LS~Gq~qrv~lAral~~~p~illLDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH--~~~~~~~~~ 228 (269)
T cd03294 160 ELSGGMQQRVGLARALAVDPDILLMDEAF-SALDPLIRREMQDELLRLQAELQKTIVFITH--DLDEALRLG 228 (269)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC--CHHHHHHhc
Confidence 35777777776666677888999999998 789988877766666554332 344555544 333344443
No 370
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.45 E-value=0.0011 Score=56.54 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=39.8
Q ss_pred cCHHHHHHHHhcCC----CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 100 LTDGVLLREILSNP----DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 100 ~T~~~l~~~l~~~~----~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
.+.|+..+..+... .+.+.+++++||.. ..+|......+.+.+......+.++|+.|.-
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~-~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEID-AALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 66776555544332 24678999999999 7899888777666665544334677777654
No 371
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.45 E-value=0.00032 Score=58.15 Aligned_cols=142 Identities=18% Similarity=0.275 Sum_probs=75.3
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEe------cccchhhhHHHHHH--HHHHhCCccCCeeeeeeeec
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV------TQPRRVAAVSVARR--VAQELGVRLGEEVGYAIRFE 88 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~------~~P~~~l~~q~~~~--~~~~~~~~~~~~~g~~~~~~ 88 (432)
+..|+.+.|.||.||||||++..+.....+..|...+- ..|..--+.-++++ +.. ...+...+|.+.+..
T Consensus 22 v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFa--HLtV~qNigLGl~P~ 99 (231)
T COG3840 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFA--HLTVAQNIGLGLSPG 99 (231)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccch--hhhhhhhhcccCCcc
Confidence 56789999999999999999999988776555543332 22322211111111 111 111222222211111
Q ss_pred ccCCC--C-------ceEE----------EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC
Q 014006 89 DRTSE--R-------TLIK----------YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (432)
Q Consensus 89 ~~~~~--~-------~~i~----------v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~ 149 (432)
-+.+. + .++- -.+-|.-.+..+.+..+.+--++.+||.- ..+|+....+++.-+......
T Consensus 100 LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPF-sALdP~LR~eMl~Lv~~l~~E 178 (231)
T COG3840 100 LKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPF-SALDPALRAEMLALVSQLCDE 178 (231)
T ss_pred cccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCch-hhcCHHHHHHHHHHHHHHHHh
Confidence 11000 0 0000 02233334444444456666799999998 789999877776666554433
Q ss_pred -CcEEEEEecccC
Q 014006 150 -KLKILITSATLD 161 (432)
Q Consensus 150 -~~~ii~~SAT~~ 161 (432)
+.-+++.|.+++
T Consensus 179 ~~~TllmVTH~~~ 191 (231)
T COG3840 179 RKMTLLMVTHHPE 191 (231)
T ss_pred hCCEEEEEeCCHH
Confidence 345666666553
No 372
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=0.00076 Score=60.41 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=41.2
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc-CCcEEEEEeccc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~-~~~~ii~~SAT~ 160 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+.+.+..... .+..+|+.|..+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~ 206 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPT-GNLDARNADSIFQLLGELNRLQGTAFLVVTHDL 206 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4566666666655567788999999998 78998887776666655433 235566666543
No 373
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.44 E-value=0.0014 Score=64.58 Aligned_cols=143 Identities=17% Similarity=0.124 Sum_probs=78.3
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEeccc----------chhhhHHHHHHHHHHhCCcc---------
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP----------RRVAAVSVARRVAQELGVRL--------- 77 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P----------~~~l~~q~~~~~~~~~~~~~--------- 77 (432)
+..|+.+.|.||+||||||++..++.......|...+--.+ ....+.+.........+...
T Consensus 47 I~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~e 126 (549)
T PRK13545 47 VPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPE 126 (549)
T ss_pred EeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHH
Confidence 56899999999999999999999988765544432211100 00001111000000000000
Q ss_pred -CCeeeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEE
Q 014006 78 -GEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (432)
Q Consensus 78 -~~~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~ 156 (432)
....|. . ......+.-.+.|...+..+....+.+.+++++||.- ..+|......+++.+......+.-+|+.
T Consensus 127 lLe~lgL----~--~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPT-sgLD~~sr~~LlelL~el~~~G~TIIIV 199 (549)
T PRK13545 127 IIEFADI----G--KFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEAL-SVGDQTFTKKCLDKMNEFKEQGKTIFFI 199 (549)
T ss_pred HHHHcCC----h--hHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 000000 0 0011233446788877777776677889999999998 7888887766666555443333455555
Q ss_pred ecccChHHHHhh
Q 014006 157 SATLDGEKVSKF 168 (432)
Q Consensus 157 SAT~~~~~~~~~ 168 (432)
|.- .+.+..+
T Consensus 200 SHd--l~~i~~l 209 (549)
T PRK13545 200 SHS--LSQVKSF 209 (549)
T ss_pred ECC--HHHHHHh
Confidence 543 3344444
No 374
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.44 E-value=0.00061 Score=61.35 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=44.5
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|. +.+.+..+.
T Consensus 131 ~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH--~~~~~~~~~ 199 (241)
T PRK14250 131 NLSGGEAQRVSIARTLANNPEVLLLDEPT-SALDPTSTEIIEELIVKLKNKMNLTVIWITH--NMEQAKRIG 199 (241)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEec--cHHHHHHhC
Confidence 35677777776666667888999999998 788888777655555554332 345566554 433444443
No 375
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.002 Score=59.60 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=47.0
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
+.-.+.|+..+..+......+.+++++||.- ..+|......+.+.+...... +..+|+.|. +.+.+..+.
T Consensus 142 ~~~LSgGq~qrv~iAraL~~~P~llllDEPt-~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtH--d~~~~~~~~ 212 (287)
T PRK13637 142 PFELSGGQKRRVAIAGVVAMEPKILILDEPT-AGLDPKGRDEILNKIKELHKEYNMTIILVSH--SMEDVAKLA 212 (287)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCc-cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC--CHHHHHHhC
Confidence 4446788887777777778889999999998 789988877766555544332 344555544 444444444
No 376
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.0018 Score=59.74 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=45.6
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
+--.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.|. +.+.+..+.
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~tiiivsH--~~~~~~~~~ 212 (280)
T PRK13649 143 PFELSGGQMRRVAIAGILAMEPKILVLDEPT-AGLDPKGRKELMTLFKKLHQSGMTIVLVTH--LMDDVANYA 212 (280)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEec--cHHHHHHhC
Confidence 3345677777776666677788999999998 789988877766666554333344555544 444444443
No 377
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00062 Score=61.81 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=45.0
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~-~~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+.+.+..... .+..+|+.|. +.+.+..+.
T Consensus 129 LSgGq~qrl~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~L~~~~~~~g~tviivsH--~~~~~~~~~ 196 (255)
T PRK11248 129 LSGGQRQRVGIARALAANPQLLLLDEPF-GALDAFTREQMQTLLLKLWQETGKQVLLITH--DIEEAVFMA 196 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC--CHHHHHHhC
Confidence 5677777776666667888999999998 78999887776666655422 2345565554 444444444
No 378
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.44 E-value=0.00042 Score=61.54 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=40.7
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+..... +..+|+.|..
T Consensus 139 ~LS~G~~qr~~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~ 197 (221)
T cd03244 139 NLSVGQRQLLCLARALLRKSKILVLDEAT-ASVDPETDALIQKTIREAFK-DCTVLTIAHR 197 (221)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEeCC
Confidence 35666666666666677888999999998 78888887776565555433 3555655543
No 379
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.44 E-value=0.00048 Score=70.79 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=44.5
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.+.|...+..+.+..+.+.+++++||+- ..+|.+....+.+.+....+. .-+|..|.-+
T Consensus 477 LSGGqrQRialARaLl~~~~illlDEpt-s~LD~~t~~~i~~~l~~~~~~-~tvIivtHr~ 535 (592)
T PRK10790 477 LSVGQKQLLALARVLVQTPQILILDEAT-ANIDSGTEQAIQQALAAVREH-TTLVVIAHRL 535 (592)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHhCC-CEEEEEecch
Confidence 5678888887777778889999999998 789988877766666655443 5666666544
No 380
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.44 E-value=0.00076 Score=60.09 Aligned_cols=62 Identities=26% Similarity=0.240 Sum_probs=41.6
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+..+|+.|..+
T Consensus 142 ~~LS~G~~qrl~laral~~~p~illlDEP~-~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~ 203 (226)
T cd03234 142 KGISGGERRRVSIAVQLLWDPKVLILDEPT-SGLDSFTALNLVSTLSQLARRNRIVILTIHQP 203 (226)
T ss_pred cCcCHHHHHHHHHHHHHHhCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 345667666666665567788999999998 78998887776665555433334555555543
No 381
>PF13173 AAA_14: AAA domain
Probab=97.43 E-value=0.0015 Score=52.41 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=22.9
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
+++.+++.||.|+||||++..++....
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 367899999999999999988876654
No 382
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.43 E-value=0.0014 Score=54.69 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=24.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEeccc
Q 014006 23 VVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (432)
Q Consensus 23 ~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P 57 (432)
+++.|++|+|||+++..++..... .+..++++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~ 35 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDI 35 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEEC
Confidence 578999999999888888776644 3455555543
No 383
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.00043 Score=63.51 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=42.6
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEeccc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~ 160 (432)
.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|..+
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEP~-~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 203 (271)
T PRK13632 141 QNLSGGQKQRVAIASVLALNPEIIIFDEST-SMLDPKGKREIKKIMVDLRKTRKKTLISITHDM 203 (271)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCcEEEEEEech
Confidence 345677777776666677888999999998 789988877766666554432 24455555544
No 384
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.0009 Score=64.49 Aligned_cols=61 Identities=26% Similarity=0.301 Sum_probs=42.9
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc-CCcEEEEEeccc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATL 160 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~-~~~~ii~~SAT~ 160 (432)
-.+.|+..+..+......+.+++++||.- ..+|......+.+.+..... .+.-+|+.|..+
T Consensus 164 ~LSgGq~QRv~LArAL~~~P~iLLLDEPt-s~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~ 225 (400)
T PRK10070 164 ELSGGMRQRVGLARALAINPDILLMDEAF-SALDPLIRTEMQDELVKLQAKHQRTIVFISHDL 225 (400)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCC-ccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH
Confidence 45777777777666677888999999998 78999887776666655432 234566655543
No 385
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.42 E-value=0.00061 Score=62.51 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=45.5
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
+.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.|. +.+.+..+.
T Consensus 134 ~~~LSgG~~qrl~laraL~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~g~tii~vtH--~~~~~~~~~ 203 (271)
T PRK13638 134 IQCLSHGQKKRVAIAGALVLQARYLLLDEPT-AGLDPAGRTQMIAIIRRIVAQGNHVIISSH--DIDLIYEIS 203 (271)
T ss_pred chhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHhC
Confidence 3345677777776666677889999999998 789988877766655554333344555554 333444443
No 386
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.42 E-value=0.00046 Score=63.66 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=44.1
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecccC
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLD 161 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~-~~~~ii~~SAT~~ 161 (432)
+.-.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+..... .+.-+|+.|..++
T Consensus 142 ~~~LS~G~~qrv~laral~~~p~llllDEPt-~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~ 206 (280)
T PRK13633 142 PHLLSGGQKQRVAIAGILAMRPECIIFDEPT-AMLDPSGRREVVNTIKELNKKYGITIILITHYME 206 (280)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 3345677777766666677888999999998 78999887776666555432 2355666665443
No 387
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.42 E-value=0.0012 Score=59.14 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=25.1
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEec
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~ 55 (432)
.+..+++.||+|+|||.++..+...... .+.++.++
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~-~~~~v~y~ 79 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQ-RGRAVGYV 79 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEE
Confidence 3468999999999999877766654332 24555555
No 388
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.42 E-value=0.0027 Score=58.93 Aligned_cols=113 Identities=13% Similarity=0.173 Sum_probs=63.0
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEE-ecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceE
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-VTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl-~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 97 (432)
.++.+++.||+|+|||.++..+...... .+..+. +..| .+..+ +...++.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~-~g~~v~~~~~~--~l~~~----lk~~~~~---------------------- 205 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAK-KGVSSTLLHFP--EFIRE----LKNSISD---------------------- 205 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCEEEEEHH--HHHHH----HHHHHhc----------------------
Confidence 3568999999999999887777766553 333343 3333 23333 3222210
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecccChHHHHhhc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~-~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+....++ .+.+++++||||...-....-....++..++..+ ..+..+++ |.-++.+.+.+.|
T Consensus 206 --~~~~~~l~------~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~-TSNl~~~el~~~~ 269 (306)
T PRK08939 206 --GSVKEKID------AVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFF-TSNFDFDELEHHL 269 (306)
T ss_pred --CcHHHHHH------HhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEE-ECCCCHHHHHHHH
Confidence 01122222 2457889999999843333322335566665544 23344444 4466766676666
No 389
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.42 E-value=0.00063 Score=60.67 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=45.5
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... ..+|+.|. +.+.+..+.
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~-~tii~~sH--~~~~~~~~~ 207 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEVLLLDEPT-SALDPISTAKIEELIAELKKE-YTIVIVTH--NMQQAARVA 207 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhhC-cEEEEEec--cHHHHHHhC
Confidence 345677777766666677788999999998 789998877766666655443 34555444 444444443
No 390
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.41 E-value=0.00046 Score=62.72 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=40.8
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSAT 159 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT 159 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|..
T Consensus 154 LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~ 213 (255)
T PRK11300 154 LAYGQQRRLEIARCMVTQPEILMLDEPA-AGLNPKETKELDELIAELRNEHNVTVLLIEHD 213 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCc-cCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 4566666666666667889999999998 789988877766666554432 3455665543
No 391
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=97.41 E-value=0.00069 Score=68.90 Aligned_cols=143 Identities=17% Similarity=0.136 Sum_probs=80.0
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHH-HH---HH---HhCCccCCeeeeeeee--
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVAR-RV---AQ---ELGVRLGEEVGYAIRF-- 87 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~-~~---~~---~~~~~~~~~~g~~~~~-- 87 (432)
+.+|+.+.++||+||||||++..+........|...+--.+.+....+..+ .+ .+ .+..............
T Consensus 365 i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~ 444 (555)
T TIGR01194 365 IAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDN 444 (555)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHH
Confidence 568999999999999999999988887766555444333333332211111 10 00 0110010000000000
Q ss_pred ----------cccC---CCC-ceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhh-hcCCcE
Q 014006 88 ----------EDRT---SER-TLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL-RASKLK 152 (432)
Q Consensus 88 ----------~~~~---~~~-~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~-~~~~~~ 152 (432)
+... ..+ ....-.+.|...+..+.+..+.+.+++|+||+- ..+|......+.+.+... ...+.-
T Consensus 445 ~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~t-s~LD~~~~~~i~~~l~~~~~~~~~t 523 (555)
T TIGR01194 445 AQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWA-ADQDPAFKRFFYEELLPDLKRQGKT 523 (555)
T ss_pred HHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 0000 000 001335678777777777788899999999998 789988877766665432 222356
Q ss_pred EEEEeccc
Q 014006 153 ILITSATL 160 (432)
Q Consensus 153 ii~~SAT~ 160 (432)
+|+.|.-+
T Consensus 524 iiiisH~~ 531 (555)
T TIGR01194 524 IIIISHDD 531 (555)
T ss_pred EEEEeccH
Confidence 66666543
No 392
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.41 E-value=0.0017 Score=59.74 Aligned_cols=141 Identities=16% Similarity=0.161 Sum_probs=75.4
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcE-----EEecccchhhh-HHHHHHHHHHhCCccCC--------eee
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----IGVTQPRRVAA-VSVARRVAQELGVRLGE--------EVG 82 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~-----vl~~~P~~~l~-~q~~~~~~~~~~~~~~~--------~~g 82 (432)
+..|+.+.+.||+||||||++..+........|.. +.++.....+. ..+.+.+. ++..... ..+
T Consensus 60 i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~--~~~~~~~~~~~~~l~~~~ 137 (282)
T cd03291 60 IEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENII--FGVSYDEYRYKSVVKACQ 137 (282)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhh--cccccCHHHHHHHHHHhC
Confidence 56899999999999999999998888765554432 22221111110 00111110 0000000 000
Q ss_pred eeeeecccC-----CCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 83 YAIRFEDRT-----SERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 83 ~~~~~~~~~-----~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
......... .......-.+.|...+..+....+.+.+++++||.- ..+|......+++.++.....+..+|+.|
T Consensus 138 l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt-~gLD~~~~~~l~~~ll~~~~~~~tIiiis 216 (282)
T cd03291 138 LEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF-GYLDVFTEKEIFESCVCKLMANKTRILVT 216 (282)
T ss_pred CHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCC-ccCCHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence 000000000 000112346788888887777778889999999998 78888876665554433222235566655
Q ss_pred ccc
Q 014006 158 ATL 160 (432)
Q Consensus 158 AT~ 160 (432)
..+
T Consensus 217 H~~ 219 (282)
T cd03291 217 SKM 219 (282)
T ss_pred CCh
Confidence 443
No 393
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.41 E-value=0.00024 Score=64.44 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=43.3
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|...+..+......+.+++++||.- ..+|......+.+.+......+..+|+.| .+.+.+.++.
T Consensus 145 LS~Gq~qrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~tvi~~t--H~~~~~~~~~ 211 (250)
T PRK11264 145 LSGGQQQRVAIARALAMRPEVILFDEPT-SALDPELVGEVLNTIRQLAQEKRTMVIVT--HEMSFARDVA 211 (250)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHhcCCEEEEEe--CCHHHHHHhc
Confidence 4666666666666667788999999998 78998887776665555443334455544 3444444444
No 394
>PRK12377 putative replication protein; Provisional
Probab=97.41 E-value=0.0033 Score=56.39 Aligned_cols=113 Identities=18% Similarity=0.209 Sum_probs=60.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEEE
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKY 99 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v 99 (432)
..++++.||+|+|||.++..+...... .+..++++ +...+..++.. .+.. +
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~-~g~~v~~i-~~~~l~~~l~~----~~~~------~----------------- 151 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLA-KGRSVIVV-TVPDVMSRLHE----SYDN------G----------------- 151 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCeEEE-EHHHHHHHHHH----HHhc------c-----------------
Confidence 468999999999999877777665543 34444444 22333333322 1110 0
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+...+++ .+.++++|||||++. .....+....+-.++..+-. ...+|+.| -++.+.+.+.+
T Consensus 152 ~~~~~~l~------~l~~~dLLiIDDlg~-~~~s~~~~~~l~~ii~~R~~~~~ptiitS-Nl~~~~l~~~~ 214 (248)
T PRK12377 152 QSGEKFLQ------ELCKVDLLVLDEIGI-QRETKNEQVVLNQIIDRRTASMRSVGMLT-NLNHEAMSTLL 214 (248)
T ss_pred chHHHHHH------HhcCCCEEEEcCCCC-CCCCHHHHHHHHHHHHHHHhcCCCEEEEc-CCCHHHHHHHh
Confidence 01112222 246789999999973 33344445556656555433 24555554 44444444433
No 395
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.41 E-value=0.00035 Score=73.32 Aligned_cols=139 Identities=22% Similarity=0.270 Sum_probs=79.0
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHH---------------HHHHhCCccCC--
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR---------------VAQELGVRLGE-- 79 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~---------------~~~~~~~~~~~-- 79 (432)
+.+|+.+.|+||+||||||++..++....+..|...+--.|.+..-.+..++ +.+.. ..+.
T Consensus 497 i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi--~l~~~~ 574 (708)
T TIGR01193 497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENL--LLGAKE 574 (708)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHH--hccCCC
Confidence 4679999999999999999999888877666554433333333222111111 00000 0000
Q ss_pred eeeee--------eeec---ccCCCCceEEE------cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHH
Q 014006 80 EVGYA--------IRFE---DRTSERTLIKY------LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (432)
Q Consensus 80 ~~g~~--------~~~~---~~~~~~~~i~v------~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~ 142 (432)
..... ...+ .....+.+-.+ .+.|...+..+.+..+.+.+++++||+- ..+|......+.+.
T Consensus 575 ~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~T-s~LD~~te~~i~~~ 653 (708)
T TIGR01193 575 NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDEST-SNLDTITEKKIVNN 653 (708)
T ss_pred CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCcc-ccCCHHHHHHHHHH
Confidence 00000 0000 00000111111 4788888888877788899999999998 78888887776666
Q ss_pred HHhhhcCCcEEEEEeccc
Q 014006 143 LVNLRASKLKILITSATL 160 (432)
Q Consensus 143 ~~~~~~~~~~ii~~SAT~ 160 (432)
+... + +.-+|..|.-+
T Consensus 654 L~~~-~-~~T~IiitHr~ 669 (708)
T TIGR01193 654 LLNL-Q-DKTIIFVAHRL 669 (708)
T ss_pred HHHh-c-CCEEEEEecch
Confidence 6553 2 34455555544
No 396
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.40 E-value=0.00025 Score=74.08 Aligned_cols=139 Identities=19% Similarity=0.227 Sum_probs=78.5
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHH-H---HH---HhCCccCCeeeee--eee
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR-V---AQ---ELGVRLGEEVGYA--IRF 87 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~-~---~~---~~~~~~~~~~g~~--~~~ 87 (432)
+.+|+.+.|+|++||||||++..++....+..|...+--.+.+..-.+..++ + .+ .+.-++-..+... ...
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~ 555 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTL 555 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCH
Confidence 5689999999999999999999998887766554433333333322211111 0 00 0000000000000 000
Q ss_pred ------------c---ccCCCCceE------EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhh
Q 014006 88 ------------E---DRTSERTLI------KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (432)
Q Consensus 88 ------------~---~~~~~~~~i------~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~ 146 (432)
+ .....+.+- .-.+.|+-.+..+.+..+.+.+++++||+- ..+|......+.+.+...
T Consensus 556 e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpT-S~LD~~te~~i~~~L~~~ 634 (686)
T TIGR03797 556 DEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEAT-SALDNRTQAIVSESLERL 634 (686)
T ss_pred HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHh
Confidence 0 000000011 125788888887777788899999999998 789998877776766554
Q ss_pred hcCCcEEEEEecc
Q 014006 147 RASKLKILITSAT 159 (432)
Q Consensus 147 ~~~~~~ii~~SAT 159 (432)
+.-+|..|.-
T Consensus 635 ---~~T~IiItHr 644 (686)
T TIGR03797 635 ---KVTRIVIAHR 644 (686)
T ss_pred ---CCeEEEEecC
Confidence 2345555543
No 397
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0024 Score=60.51 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=31.6
Q ss_pred HHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 107 REILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 107 ~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
+.+...+......++||||+| .++......+++.+.. .+.+..+|++|
T Consensus 131 ~~l~~~~~~g~~rVviIDeAd--~l~~~aanaLLk~LEE-pp~~~~fiLit 178 (351)
T PRK09112 131 HFLSQTSGDGNWRIVIIDPAD--DMNRNAANAILKTLEE-PPARALFILIS 178 (351)
T ss_pred HHhhhccccCCceEEEEEchh--hcCHHHHHHHHHHHhc-CCCCceEEEEE
Confidence 333333456788999999999 5667777776676654 33445666665
No 398
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=0.00041 Score=61.26 Aligned_cols=61 Identities=18% Similarity=0.331 Sum_probs=41.0
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSAT 159 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT 159 (432)
.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|.-
T Consensus 130 ~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 191 (214)
T cd03297 130 AQLSGGEKQRVALARALAAQPELLLLDEPF-SALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191 (214)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHHcCcEEEEEecC
Confidence 335667666666666667788999999998 789988877766655554332 3445555543
No 399
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=97.40 E-value=0.0002 Score=60.22 Aligned_cols=118 Identities=22% Similarity=0.265 Sum_probs=54.5
Q ss_pred EEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeee-------cccCCCCce
Q 014006 24 VVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF-------EDRTSERTL 96 (432)
Q Consensus 24 ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~~~~~ 96 (432)
++.|+-|-|||+.+-..+.........+++++.|..+.+..+.+.+.+.+.. .|+.... .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKA-----LGYKEEKKKRIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC-------------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccc-----cccccccccccccccccccccce
Confidence 5789999999988776665554444468999999999888877655333221 1111000 001123567
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccCh
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~ 162 (432)
+.|..|..+... -.+.+++|||||= ++.... ++.++.. ...++||.|+..
T Consensus 76 i~f~~Pd~l~~~------~~~~DlliVDEAA--aIp~p~----L~~ll~~----~~~vv~stTi~G 125 (177)
T PF05127_consen 76 IEFVAPDELLAE------KPQADLLIVDEAA--AIPLPL----LKQLLRR----FPRVVFSTTIHG 125 (177)
T ss_dssp --B--HHHHCCT----------SCEEECTGG--GS-HHH----HHHHHCC----SSEEEEEEEBSS
T ss_pred EEEECCHHHHhC------cCCCCEEEEechh--cCCHHH----HHHHHhh----CCEEEEEeeccc
Confidence 888888766422 2245899999996 444433 4444332 234566667743
No 400
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.39 E-value=0.00059 Score=62.83 Aligned_cols=64 Identities=20% Similarity=0.241 Sum_probs=44.7
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccC
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLD 161 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~ 161 (432)
+.-.+.|...+..+......+.+++++||.- ..+|......+.+.+...... +..+|+.|.-++
T Consensus 138 ~~~LS~G~~qrv~lAraL~~~p~llllDEPt-~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~ 202 (277)
T PRK13642 138 PARLSGGQKQRVAVAGIIALRPEIIILDEST-SMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD 202 (277)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3345677777776666677788999999998 789998877766666554332 456677665543
No 401
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.39 E-value=0.0023 Score=57.99 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=29.3
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCc
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG 50 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~ 50 (432)
.+.+|+.+.|.||+||||||++..+........|.
T Consensus 22 ~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~ 56 (255)
T cd03236 22 VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGK 56 (255)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCce
Confidence 36789999999999999999999888877655543
No 402
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.39 E-value=0.0012 Score=60.01 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=41.9
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSAT 159 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT 159 (432)
--.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|..
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt-~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~ 200 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPT-TDLDVVAQARILDLLESIVQKRALGMLLVTHD 200 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCC-cccCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 345778777777766677888999999998 788888766655555544322 3455665553
No 403
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00048 Score=61.75 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=42.6
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSAT 159 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT 159 (432)
-.+.|...+..+....+.+.+++++||.. ..+|......+.+.+...... +..+|+.|.-
T Consensus 129 ~LS~G~~qrl~laral~~~p~llllDEPt-~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~ 189 (235)
T cd03299 129 TLSGGEQQRVAIARALVVNPKILLLDEPF-SALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189 (235)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEECCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 35677777777666677888999999998 789988877766666554332 3556666553
No 404
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.0022 Score=61.15 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=45.5
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|+..+..+......+.+++++||.- ..+|......+.+.+...... +..+|+.|. +.+.+..+.
T Consensus 134 ~LSgGq~QRvalARAL~~~P~llLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tii~vTH--d~~ea~~l~ 202 (356)
T PRK11650 134 ELSGGQRQRVAMGRAIVREPAVFLFDEPL-SNLDAKLRVQMRLEIQRLHRRLKTTSLYVTH--DQVEAMTLA 202 (356)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC--CHHHHHHhC
Confidence 35677777777777778899999999998 788988877665555544332 345666554 444344433
No 405
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.38 E-value=0.00065 Score=61.80 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=44.8
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
+.-.+.|...+..+......+.+++++||.- ..+|......+.+.+......+..+|+.|..+ +.+..+.
T Consensus 135 ~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~--~~~~~~~ 204 (256)
T TIGR03873 135 MSTLSGGERQRVHVARALAQEPKLLLLDEPT-NHLDVRAQLETLALVRELAATGVTVVAALHDL--NLAASYC 204 (256)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCcc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH--HHHHHhC
Confidence 3345677766666666667788999999998 78888877765555554433334566665543 3344443
No 406
>PRK09183 transposase/IS protein; Provisional
Probab=97.38 E-value=0.0016 Score=59.18 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=28.3
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEec
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~ 55 (432)
+.++.++++.||+|+|||+++..+..... ..+..+.++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~~G~~v~~~ 136 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVRFT 136 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEE
Confidence 67889999999999999988777754433 235566665
No 407
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.38 E-value=0.0019 Score=60.46 Aligned_cols=116 Identities=18% Similarity=0.173 Sum_probs=61.8
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEE
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 98 (432)
.++++++.||||+|||.++..++.... ..+..|+++. ...+..++... .+. . ..
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~-~~g~~V~y~t-~~~l~~~l~~~---~~~--------------~--~~----- 235 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELL-DRGKSVIYRT-ADELIEILREI---RFN--------------N--DK----- 235 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEE-HHHHHHHHHHH---Hhc--------------c--ch-----
Confidence 468999999999999977776665543 2355666653 22333222210 000 0 00
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.... .. .+.+++++|||+.+ .....++....+-.++..+-...+-+++|..++++.+...+
T Consensus 236 -~~~~~-~~------~l~~~DLLIIDDlG-~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~ 297 (329)
T PRK06835 236 -ELEEV-YD------LLINCDLLIIDDLG-TEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTY 297 (329)
T ss_pred -hHHHH-HH------HhccCCEEEEeccC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 00101 11 24567899999998 34444454444555555443222335555566665554443
No 408
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.38 E-value=0.00078 Score=60.20 Aligned_cols=70 Identities=24% Similarity=0.220 Sum_probs=45.2
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
+.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+.....+ +.-+|+.|. +.+.+..+.
T Consensus 123 ~~~LS~G~~qrv~laral~~~p~vllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH--~~~~~~~~~ 193 (230)
T TIGR02770 123 PFQLSGGMLQRVMIALALLLEPPFLIADEPT-TDLDVVNQARVLKLLRELRQLFGTGILLITH--DLGVVARIA 193 (230)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCc-cccCHHHHHHHHHHHHHHHHhcCCEEEEEeC--CHHHHHHhC
Confidence 3346677777666666667788999999998 789988877766666554432 344555444 444444444
No 409
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.38 E-value=5.4e-05 Score=70.21 Aligned_cols=144 Identities=19% Similarity=0.215 Sum_probs=74.4
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEe------cccch---hhhHHHHHHHHHHhCCccCCeeeeeee
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV------TQPRR---VAAVSVARRVAQELGVRLGEEVGYAIR 86 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~------~~P~~---~l~~q~~~~~~~~~~~~~~~~~g~~~~ 86 (432)
.+.+|+.+++.||+||||||++..++.....+.|...+- +.|.+ +.+-|.+. -+-..++...+++..+
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yA---LyPhmtV~~Niaf~Lk 101 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYA---LYPHMTVYENIAFGLK 101 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCcc---ccCCCcHHHHhhhhhh
Confidence 367899999999999999999999988766554422111 11110 01111000 0000001011111100
Q ss_pred eccc-------------------CCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhh
Q 014006 87 FEDR-------------------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (432)
Q Consensus 87 ~~~~-------------------~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~ 147 (432)
.... ..-+..-.-.+-|+-.+..+.+....+.+++.+||.= ..+|......+-..+.+..
T Consensus 102 ~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPl-SnLDa~lR~~mr~ei~~lh 180 (338)
T COG3839 102 LRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPL-SNLDAKLRVLMRSEIKKLH 180 (338)
T ss_pred hCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCch-hHhhHHHHHHHHHHHHHHH
Confidence 0000 0000111124556666666666678889999999986 6688877666555554433
Q ss_pred cCCcEEEEEecccChHH
Q 014006 148 ASKLKILITSATLDGEK 164 (432)
Q Consensus 148 ~~~~~ii~~SAT~~~~~ 164 (432)
. ...+-.+-.|.+..+
T Consensus 181 ~-~l~~T~IYVTHDq~E 196 (338)
T COG3839 181 E-RLGTTTIYVTHDQVE 196 (338)
T ss_pred H-hcCCcEEEEcCCHHH
Confidence 2 244444445666543
No 410
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.00053 Score=63.10 Aligned_cols=70 Identities=17% Similarity=0.216 Sum_probs=45.3
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
+.-.+.|...+..+......+.+++|+||.- ..+|......+.+.+...... +.-+|+.|. +.+.+.++.
T Consensus 135 ~~~LS~Gq~qrl~laraL~~~p~llilDEPt-~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH--~~~~~~~~~ 205 (277)
T PRK13652 135 PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPT-AGLDPQGVKELIDFLNDLPETYGMTVIFSTH--QLDLVPEMA 205 (277)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEec--CHHHHHHhC
Confidence 3446777777777766677889999999998 788888777655555544332 344555444 444444444
No 411
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.38 E-value=0.0009 Score=68.00 Aligned_cols=142 Identities=18% Similarity=0.139 Sum_probs=77.9
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHH-HHHH---H---HHhCCccCCeeeeeee---
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSV-ARRV---A---QELGVRLGEEVGYAIR--- 86 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~-~~~~---~---~~~~~~~~~~~g~~~~--- 86 (432)
+.+|+.+.++||+||||||++..++....+..|...+--.+.+....+. .+.+ . ..++...... +....
T Consensus 346 i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n-~~~~~~~~ 424 (547)
T PRK10522 346 IKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE-GKPANPAL 424 (547)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc-cCchHHHH
Confidence 4689999999999999999999888877655554333223322211110 0000 0 0000000000 00000
Q ss_pred ---------ecccCC-CCc--eEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc-CCcEE
Q 014006 87 ---------FEDRTS-ERT--LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKI 153 (432)
Q Consensus 87 ---------~~~~~~-~~~--~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~-~~~~i 153 (432)
...... ... +=.-.+.|...+..+.+..+++.+++++||+- ..+|......+.+.+..... .+.-+
T Consensus 425 ~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~t-s~LD~~~~~~i~~~l~~~~~~~~~tv 503 (547)
T PRK10522 425 VEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWA-ADQDPHFRREFYQVLLPLLQEMGKTI 503 (547)
T ss_pred HHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 000000 000 00124678887777777788899999999998 78898887766666654332 23556
Q ss_pred EEEeccc
Q 014006 154 LITSATL 160 (432)
Q Consensus 154 i~~SAT~ 160 (432)
|+.|.-+
T Consensus 504 i~itH~~ 510 (547)
T PRK10522 504 FAISHDD 510 (547)
T ss_pred EEEEech
Confidence 6666643
No 412
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.37 E-value=0.0025 Score=59.36 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=44.1
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+......+.+++++||.- ..+|......+++.+......+.-+|+.|. +.+.+..+.
T Consensus 165 ~LSgGqkqrvalA~aL~~~P~lLlLDEPt-~~LD~~~~~~l~~~l~~l~~~g~tiiivtH--d~~~~~~~a 232 (305)
T PRK13651 165 ELSGGQKRRVALAGILAMEPDFLVFDEPT-AGLDPQGVKEILEIFDNLNKQGKTIILVTH--DLDNVLEWT 232 (305)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEee--CHHHHHHhC
Confidence 35566666666666667788999999998 788888777666665554433345555554 434444444
No 413
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.37 E-value=0.0007 Score=70.96 Aligned_cols=140 Identities=22% Similarity=0.207 Sum_probs=77.6
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHH-HHH---HH---HhCCccCCeeeeee---e
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVA-RRV---AQ---ELGVRLGEEVGYAI---R 86 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~-~~~---~~---~~~~~~~~~~g~~~---~ 86 (432)
+.+|+.+.|+||+||||||++..+........|...+--.|.+..-.+-. +.+ .+ .++.++.....+.. .
T Consensus 504 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~ 583 (711)
T TIGR00958 504 LHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTP 583 (711)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCC
Confidence 56899999999999999999999988877666644444445443322111 111 00 00000000000000 0
Q ss_pred ec---------------ccCCCCce------EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 87 FE---------------DRTSERTL------IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 87 ~~---------------~~~~~~~~------i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
.+ .....+-+ -.-.+.|.-.+..+.+..+++.+++|+||+- ..+|.+....+.+ . .
T Consensus 584 ~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpT-SaLD~~te~~i~~-~-~ 660 (711)
T TIGR00958 584 DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEAT-SALDAECEQLLQE-S-R 660 (711)
T ss_pred HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccc-cccCHHHHHHHHH-h-h
Confidence 00 00000001 1125678877777777778899999999998 6788877555444 2 2
Q ss_pred hhcCCcEEEEEeccc
Q 014006 146 LRASKLKILITSATL 160 (432)
Q Consensus 146 ~~~~~~~ii~~SAT~ 160 (432)
.. ++.-+|..|.-+
T Consensus 661 ~~-~~~TvIiItHrl 674 (711)
T TIGR00958 661 SR-ASRTVLLIAHRL 674 (711)
T ss_pred cc-CCCeEEEEeccH
Confidence 22 235566666554
No 414
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.0048 Score=51.99 Aligned_cols=140 Identities=23% Similarity=0.259 Sum_probs=76.5
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCc--------------EEEecc-----cchhhhHHHHHHHHHHhCCc
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG--------------IIGVTQ-----PRRVAAVSVARRVAQELGVR 76 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~--------------~vl~~~-----P~~~l~~q~~~~~~~~~~~~ 76 (432)
.+..|+.+++.||+||||||++..+.....+..|. +-++.+ |..-....++=-+ +..|..
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL-~l~Gi~ 105 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGL-QLRGIE 105 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHH-HhcCCC
Confidence 46789999999999999999999888766544332 222222 2222211111000 111100
Q ss_pred ----------cCCeeeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhh
Q 014006 77 ----------LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (432)
Q Consensus 77 ----------~~~~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~ 146 (432)
.-..+|- ....+..|.-.+-|+-.+.-......-+.+++.+||.- -.+|.-....+-..++..
T Consensus 106 k~~R~~~a~q~l~~VgL------~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPf-gAlDa~tRe~mQelLldl 178 (259)
T COG4525 106 KAQRREIAHQMLALVGL------EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPF-GALDALTREQMQELLLDL 178 (259)
T ss_pred HHHHHHHHHHHHHHhCc------ccccccceEeecchHHHHHHHHHHhhcCcceEeecCch-hhHHHHHHHHHHHHHHHH
Confidence 0011110 01123455666777777766666666788999999976 345544433332222221
Q ss_pred -hcCCcEEEEEecccChH
Q 014006 147 -RASKLKILITSATLDGE 163 (432)
Q Consensus 147 -~~~~~~ii~~SAT~~~~ 163 (432)
...+.++++.|..+...
T Consensus 179 w~~tgk~~lliTH~ieEA 196 (259)
T COG4525 179 WQETGKQVLLITHDIEEA 196 (259)
T ss_pred HHHhCCeEEEEeccHHHH
Confidence 12357888888776543
No 415
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.36 E-value=0.00051 Score=72.13 Aligned_cols=140 Identities=20% Similarity=0.152 Sum_probs=78.8
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHH-H---H---HHhCCccCCeeeee---ee
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR-V---A---QELGVRLGEEVGYA---IR 86 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~-~---~---~~~~~~~~~~~g~~---~~ 86 (432)
+.+|+.+.|+|++||||||++..++....+..|...+--.+.+.+..+-.++ + . ..++.++-..+... ..
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~ 581 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIP 581 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCC
Confidence 5689999999999999999999898887766654433333333222111111 0 0 00000000000000 00
Q ss_pred e------------c---ccCCCCceEE------EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 87 F------------E---DRTSERTLIK------YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 87 ~------------~---~~~~~~~~i~------v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
. + .....+.+-. -.+.|+..+..+.+..+.+.+++++||+- ..+|......+.+.+..
T Consensus 582 ~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEpt-S~LD~~te~~i~~~l~~ 660 (710)
T TIGR03796 582 DADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEAT-SALDPETEKIIDDNLRR 660 (710)
T ss_pred HHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECcc-ccCCHHHHHHHHHHHHh
Confidence 0 0 0000011111 25678877777777788899999999998 78898887776666654
Q ss_pred hhcCCcEEEEEeccc
Q 014006 146 LRASKLKILITSATL 160 (432)
Q Consensus 146 ~~~~~~~ii~~SAT~ 160 (432)
. +.-+|+.|.-+
T Consensus 661 -~--~~T~IiitHrl 672 (710)
T TIGR03796 661 -R--GCTCIIVAHRL 672 (710)
T ss_pred -c--CCEEEEEecCH
Confidence 2 34556655443
No 416
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.00055 Score=60.30 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=43.6
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+......+.+++++||.- ..+|......+.+.+..... +.-+|+.| .+.+.+..+.
T Consensus 130 ~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tii~vs--H~~~~~~~~~ 196 (211)
T cd03264 130 SLSGGMRRRVGIAQALVGDPSILIVDEPT-AGLDPEERIRFRNLLSELGE-DRIVILST--HIVEDVESLC 196 (211)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHhC-CCEEEEEc--CCHHHHHHhC
Confidence 35677776666666677889999999998 78888887776655555443 34444444 3444444443
No 417
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.36 E-value=0.0013 Score=58.74 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=44.6
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|.- .+.+..+.
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~--~~~~~~~~ 213 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPT-SALDVSVQAQILDLLKKLQEELGLTLLFITHD--LGVVAKIA 213 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC--HHHHHHhc
Confidence 35677777766666677888999999998 788888877766666554432 3455555543 33344443
No 418
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.36 E-value=0.0012 Score=61.06 Aligned_cols=71 Identities=23% Similarity=0.261 Sum_probs=46.3
Q ss_pred eEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 96 ~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+--.+.|...+..+....+.+.+++|+||.- ..+|......+.+.+...... +.-+++.|. +.+.+..+.
T Consensus 138 ~~~~LS~G~~qrl~laraL~~~p~lLilDEPt-~gLD~~~~~~l~~~l~~l~~~~g~tillvsH--~~~~~~~~~ 209 (283)
T PRK13636 138 PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPT-AGLDPMGVSEIMKLLVEMQKELGLTIIIATH--DIDIVPLYC 209 (283)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhCCCEEEEEec--CHHHHHHhC
Confidence 34446777777777666677889999999998 788988877655555544332 344555544 444444444
No 419
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.36 E-value=0.002 Score=61.28 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=44.7
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhh
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKF 168 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~ 168 (432)
-.+.|+..+..+......+.+++++||.- ..+|......+...+...... +..+|+.|. +.+....+
T Consensus 134 ~LSgGq~QRvaLARaL~~~P~llLLDEP~-s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTH--d~~ea~~l 201 (353)
T TIGR03265 134 QLSGGQQQRVALARALATSPGLLLLDEPL-SALDARVREHLRTEIRQLQRRLGVTTIMVTH--DQEEALSM 201 (353)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcC--CHHHHHHh
Confidence 35677777777766677889999999998 789988877766555554332 345565554 44443333
No 420
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.35 E-value=0.00094 Score=61.47 Aligned_cols=86 Identities=27% Similarity=0.341 Sum_probs=51.2
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCC-CCcEE-E-ecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYT-KSGII-G-VTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~-~~~~v-l-~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (432)
.+++++++||||+||||.+..++...... ++.++ + -.-|.+..+.++...+++..+..+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~----------------- 255 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK----------------- 255 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee-----------------
Confidence 45688999999999997777666655432 22333 3 3445566666655556555443221
Q ss_pred eEEEcCHHHHHHHHhcCCCCCCCcEEEEeCC
Q 014006 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEA 126 (432)
Q Consensus 96 ~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~ 126 (432)
...++..+...+. .+.+.++|+||.+
T Consensus 256 --~~~~~~~l~~~l~---~~~~~d~vliDt~ 281 (282)
T TIGR03499 256 --VARDPKELRKALD---RLRDKDLILIDTA 281 (282)
T ss_pred --ccCCHHHHHHHHH---HccCCCEEEEeCC
Confidence 1124555554443 2356899999975
No 421
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.35 E-value=0.00057 Score=62.83 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=45.5
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+...+......+.-+|+.|.- .+.+..+.
T Consensus 137 ~LS~Gq~qrv~laral~~~p~llllDEPt-~gLD~~~~~~l~~~l~~l~~~~~til~vtH~--~~~~~~~~ 204 (275)
T PRK13639 137 HLSGGQKKRVAIAGILAMKPEIIVLDEPT-SGLDPMGASQIMKLLYDLNKEGITIIISTHD--VDLVPVYA 204 (275)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEecC--HHHHHHhC
Confidence 35677777777666678889999999998 7899888777666665544333456665544 33344443
No 422
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.35 E-value=0.00094 Score=68.81 Aligned_cols=143 Identities=21% Similarity=0.225 Sum_probs=84.0
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHH-H---H---HHhCCccCCeeeeee---e
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR-V---A---QELGVRLGEEVGYAI---R 86 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~-~---~---~~~~~~~~~~~g~~~---~ 86 (432)
+..|+.+.|+|+.||||||++..+.....+..|..-+--.+...+.....++ + . ..+.-++-.....+. .
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~ 575 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEAT 575 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCC
Confidence 5689999999999999999999888877766654444444433332222221 0 0 000000000000000 0
Q ss_pred ec---------------ccCCCCceEEE------cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 87 FE---------------DRTSERTLIKY------LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 87 ~~---------------~~~~~~~~i~v------~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
.+ .....+.+-.+ .+.|+-.+..+.+..+.+.+++++||+- ..+|...-..+...+.+
T Consensus 576 ~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaT-SaLD~~sE~~I~~~L~~ 654 (709)
T COG2274 576 DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEAT-SALDPETEAIILQNLLQ 654 (709)
T ss_pred HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcc-cccCHhHHHHHHHHHHH
Confidence 00 00001111122 4677878888888889999999999998 78898887777777766
Q ss_pred hhcCCcEEEEEecccC
Q 014006 146 LRASKLKILITSATLD 161 (432)
Q Consensus 146 ~~~~~~~ii~~SAT~~ 161 (432)
.... .-+|+.+.-++
T Consensus 655 ~~~~-~T~I~IaHRl~ 669 (709)
T COG2274 655 ILQG-RTVIIIAHRLS 669 (709)
T ss_pred HhcC-CeEEEEEccch
Confidence 6543 55677665443
No 423
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.35 E-value=0.00048 Score=63.79 Aligned_cols=50 Identities=24% Similarity=0.328 Sum_probs=38.1
Q ss_pred HHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCC-CCCcEEEecccchhh
Q 014006 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGY-TKSGIIGVTQPRRVA 61 (432)
Q Consensus 12 ~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~-~~~~~vl~~~P~~~l 61 (432)
.+...+..+.+++|+|+|||||||++..++..... .+..+++.+....++
T Consensus 124 ~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 124 VLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 34555677889999999999999999888876543 235678888777665
No 424
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.35 E-value=0.001 Score=60.93 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=42.7
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+.... .+..+|+.|.-+
T Consensus 139 LS~G~~qrl~LaRall~~p~illlDEpt-s~LD~~~~~~l~~~l~~~~-~~~tii~isH~~ 197 (275)
T cd03289 139 LSHGHKQLMCLARSVLSKAKILLLDEPS-AHLDPITYQVIRKTLKQAF-ADCTVILSEHRI 197 (275)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcc-ccCCHHHHHHHHHHHHHhc-CCCEEEEEECCH
Confidence 6778877777777778889999999998 7888888776555555443 235566666544
No 425
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.35 E-value=0.00049 Score=61.05 Aligned_cols=60 Identities=20% Similarity=0.234 Sum_probs=42.1
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+..... +..+|+.|.-+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~ 199 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPT-SAMDMNSEERLKERLRQLLG-DKTLIIITHRP 199 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH
Confidence 45677777776666667788999999998 78998888776666655543 34455555443
No 426
>PRK05642 DNA replication initiation factor; Validated
Probab=97.35 E-value=0.00077 Score=60.26 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=24.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ 56 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~ 56 (432)
..+++.||+|+|||.++..+..... ..+.+++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~-~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE-QRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEee
Confidence 5688999999999977776654332 2245666653
No 427
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.35 E-value=0.00094 Score=61.15 Aligned_cols=60 Identities=25% Similarity=0.306 Sum_probs=40.8
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSAT 159 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT 159 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|.-
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt-~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~ 211 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAV-SNLDLVLQAGVIRLLKKLQQQFGTACLFITHD 211 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCC-cccCHHHHHHHHHHHHHHHHHcCcEEEEEECC
Confidence 35677777666666677888999999998 788888766655555544322 3456666544
No 428
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00077 Score=63.44 Aligned_cols=60 Identities=17% Similarity=0.280 Sum_probs=43.3
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEeccc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~ 160 (432)
.+.|+..+..+....+.+.+++|+||.- ..+|......+++.+...... +.-+|+.|.-+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPt-s~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl 215 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPV-SALDVSVQAQVLNLMMDLQQELGLSYVFISHDL 215 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCC-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 5677777777666677888999999998 789988877766666654432 45666666543
No 429
>PF05729 NACHT: NACHT domain
Probab=97.34 E-value=0.0013 Score=55.10 Aligned_cols=58 Identities=22% Similarity=0.296 Sum_probs=34.7
Q ss_pred EEEEeCCCcCCCCHH-----HHHHHHHHHHhh-hcCCcEEEEEecccChHHHHhhccCCCeeec
Q 014006 120 VIILDEAHERSLNTD-----ILLGLVKRLVNL-RASKLKILITSATLDGEKVSKFFSNCPTLNV 177 (432)
Q Consensus 120 ~vViDE~h~~~~~~~-----~~~~~l~~~~~~-~~~~~~ii~~SAT~~~~~~~~~~~~~~~i~~ 177 (432)
++|+|=+|+...... ....++..++.. .+.+.++++.|.+-....+...+.....+.+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l 147 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILEL 147 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEE
Confidence 599999887443222 244556555554 3445888888766555557777755534433
No 430
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.34 E-value=0.0027 Score=57.85 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=44.2
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +.-+|+.|. +.+.+..+.
T Consensus 150 ~~LS~Gq~qrl~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tii~isH--~~~~~~~~~ 219 (258)
T PRK11701 150 TTFSGGMQQRLQIARNLVTHPRLVFMDEPT-GGLDVSVQARLLDLLRGLVRELGLAVVIVTH--DLAVARLLA 219 (258)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC--CHHHHHHhc
Confidence 335677766666666667788999999998 788988877766666554332 344555544 444444443
No 431
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.34 E-value=0.0041 Score=60.48 Aligned_cols=121 Identities=22% Similarity=0.332 Sum_probs=65.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEE-e-cccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEE
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-V-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl-~-~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 98 (432)
..++++|++|+||||.+..++..... .+.++. + .-+.|..+.++.+.+++..+..+ .+ . ...
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~-~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~---~~-------~-~~~---- 159 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKK-KGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF---YG-------D-PDN---- 159 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE---Ee-------c-CCc----
Confidence 46888999999999776666554432 233433 3 33445556666666666554331 11 0 000
Q ss_pred EcCHHH-HHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccCh
Q 014006 99 YLTDGV-LLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (432)
Q Consensus 99 v~T~~~-l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~ 162 (432)
..|.. +.+.+.. +...++||||.+-....+...+.+ ++.+........-++.++||...
T Consensus 160 -~d~~~i~~~al~~---~~~~DvVIIDTAGr~~~d~~lm~E-l~~l~~~~~pdevlLVvda~~gq 219 (437)
T PRK00771 160 -KDAVEIAKEGLEK---FKKADVIIVDTAGRHALEEDLIEE-MKEIKEAVKPDEVLLVIDATIGQ 219 (437)
T ss_pred -cCHHHHHHHHHHH---hhcCCEEEEECCCcccchHHHHHH-HHHHHHHhcccceeEEEeccccH
Confidence 11222 2222221 122489999999622344444433 56655544334567778888754
No 432
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.0018 Score=63.19 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=23.2
Q ss_pred HHHhcCC---EEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 15 ETVEQNP---VVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 15 ~~i~~~~---~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
..+..++ .+++.||.|+|||+++..++....
T Consensus 32 ~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 32 NALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred HHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3455554 379999999999988887776553
No 433
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.34 E-value=0.00038 Score=65.26 Aligned_cols=66 Identities=23% Similarity=0.180 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCC--CCCcEEEecccchhhhHHHHHHHHHHhC
Q 014006 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGY--TKSGIIGVTQPRRVAAVSVARRVAQELG 74 (432)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~--~~~~~vl~~~P~~~l~~q~~~~~~~~~~ 74 (432)
.+-|.+++.. .++.++|.|..||||| +++..++..... ....+++++.+|+.++.++..++...++
T Consensus 2 ~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 2 TDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp -HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 4568888887 7788889999999999 455444433221 3455899999999999999998877553
No 434
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.33 E-value=0.0037 Score=57.26 Aligned_cols=132 Identities=19% Similarity=0.261 Sum_probs=82.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEe-cc-cchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEE
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~-~~-P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 98 (432)
..++++|-+|+||||-+..++..+.. .+.++++ .. -.|+.|.++.+.|++..|..+... . ..
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~-~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~--------~-~G------ 203 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQ-QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG--------K-EG------ 203 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHH-CCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc--------C-CC------
Confidence 36788899999999776666665543 3445544 33 358999999999988877554221 0 11
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCc------EEEEEecccChHH--HHhhcc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL------KILITSATLDGEK--VSKFFS 170 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~------~ii~~SAT~~~~~--~~~~~~ 170 (432)
+.|..+.--......-+++++|++|=|- |+-...-++.-++++.+-..+.. -++.+=||...+. -++.|.
T Consensus 204 -~DpAaVafDAi~~Akar~~DvvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~ 281 (340)
T COG0552 204 -ADPAAVAFDAIQAAKARGIDVVLIDTAG-RLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFN 281 (340)
T ss_pred -CCcHHHHHHHHHHHHHcCCCEEEEeCcc-cccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHH
Confidence 1133222112222245789999999999 88777777777887777543322 3555589985543 334453
No 435
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.33 E-value=0.00074 Score=61.76 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=40.4
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEeccc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~ 160 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|.-+
T Consensus 148 LSgG~~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~ 208 (265)
T PRK10575 148 LSGGERQRAWIAMLVAQDSRCLLLDEPT-SALDIAHQVDVLALVHRLSQERGLTVIAVLHDI 208 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 4666666666655567788999999998 788988877655555554322 34566665543
No 436
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.33 E-value=0.00053 Score=70.41 Aligned_cols=113 Identities=19% Similarity=0.121 Sum_probs=76.2
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCC---ccEEEEeecCccccc
Q 014006 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN---CRRFIVSTNIAETSL 287 (432)
Q Consensus 211 ~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g---~~~ilvaT~~~~~Gi 287 (432)
..++.+|.|+.-..-..-+-.+|.- .++.-.-+-|....++|-..++.|... -...|.+|-+.+.|+
T Consensus 724 atgHRVLlF~qMTrlmdimEdyL~~----------~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstragglgl 793 (1157)
T KOG0386|consen 724 ATGHRVLLFSQMTRLMDILEDYLQI----------REYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGL 793 (1157)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHhh----------hhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeeccccccc
Confidence 4567889998655444444444433 244555677888889998887777644 356789999999999
Q ss_pred ccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC---CCCeEEEecCccchhh
Q 014006 288 TVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 288 di~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~---~~G~~~~l~~~~~~~~ 351 (432)
|....+.||-||- .. .+-...|+.-||.|. +.-.++++.+-..++.
T Consensus 794 NlQtadtviifds--------dw----------np~~d~qaqdrahrigq~~evRv~rl~tv~sveE 842 (1157)
T KOG0386|consen 794 NLQTADTVIIFDS--------DW----------NPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEE 842 (1157)
T ss_pred chhhcceEEEecC--------CC----------CchhHHHHHHHHHHhhchhheeeeeeehhhHHHH
Confidence 9998888875441 11 223556777777666 4566788877666554
No 437
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.33 E-value=0.00068 Score=61.99 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=45.5
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
+--.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|. +.+.+.++.
T Consensus 141 ~~~LS~Gq~qrv~laral~~~p~llllDEPt-~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH--~~~~~~~~~ 211 (265)
T PRK10253 141 VDTLSGGQRQRAWIAMVLAQETAIMLLDEPT-TWLDISHQIDLLELLSELNREKGYTLAAVLH--DLNQACRYA 211 (265)
T ss_pred cccCChHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC--CHHHHHHhC
Confidence 3345666666666666667888999999998 788988877766666554332 345565554 433444444
No 438
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.33 E-value=0.00087 Score=61.01 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=39.5
Q ss_pred EEEcCHHHHHHHHhcCCCC------CCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecc
Q 014006 97 IKYLTDGVLLREILSNPDL------SPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKLKILITSAT 159 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l------~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~-~~~~~ii~~SAT 159 (432)
+.-.+.|...+..+....+ .+.+++++||.- ..+|......+.+.+.... ..+.-+|+.|..
T Consensus 132 ~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 200 (258)
T PRK13548 132 YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPT-SALDLAHQHHVLRLARQLAHERGLAVIVVLHD 200 (258)
T ss_pred cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 3345666666555555444 478999999998 7888888776655555543 223455665543
No 439
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.33 E-value=0.0019 Score=61.27 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=25.7
Q ss_pred HHHHHHHhcCC--EEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 11 ETIVETVEQNP--VVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 11 ~~i~~~i~~~~--~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
+.+...+..++ .+++.||+|+|||+++..+.....
T Consensus 25 ~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 25 ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 33444555666 799999999999988877766543
No 440
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.0024 Score=61.19 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=42.1
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSAT 159 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT 159 (432)
-.+.|+..+..+......+.+++++||.- ..+|......+...+...... +..+|+.|.-
T Consensus 133 ~LSgGq~QRvaLAraL~~~P~lLLLDEPt-s~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd 193 (369)
T PRK11000 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPL-SNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193 (369)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 46777777777777778889999999997 788888877665555544332 3456665543
No 441
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.32 E-value=0.00023 Score=64.62 Aligned_cols=60 Identities=17% Similarity=0.319 Sum_probs=41.7
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEeccc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~ 160 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|..+
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 207 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVT-SALDPELVGEVLNVIRRLASEHDLTMLLVTHEM 207 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 5666666666665567788999999998 788888877766666554432 45667766644
No 442
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.32 E-value=0.003 Score=64.53 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=27.7
Q ss_pred CCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 113 PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 113 ~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
+.-.+.+++||||+| ++...-...++|.+. ..+.+.++|+.+
T Consensus 115 P~~gr~KVIIIDEah--~LT~~A~NALLKtLE-EPP~~v~FILaT 156 (830)
T PRK07003 115 PVDARFKVYMIDEVH--MLTNHAFNAMLKTLE-EPPPHVKFILAT 156 (830)
T ss_pred cccCCceEEEEeChh--hCCHHHHHHHHHHHH-hcCCCeEEEEEE
Confidence 344678999999999 566666677666544 333345555554
No 443
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.30 E-value=0.00085 Score=66.75 Aligned_cols=135 Identities=18% Similarity=0.223 Sum_probs=79.2
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCc-------EEEecc-----cchhhhHHHH----------HHHHHHh-
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-------IIGVTQ-----PRRVAAVSVA----------RRVAQEL- 73 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~-------~vl~~~-----P~~~l~~q~~----------~~~~~~~- 73 (432)
+..|+.++|.||+|+|||+++..+...-.+..|. .++++. |...|..+++ +.+.+.+
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~ 495 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLH 495 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHH
Confidence 5689999999999999999999998876554433 234432 2222221110 0000100
Q ss_pred CCccCCeeeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEE
Q 014006 74 GVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI 153 (432)
Q Consensus 74 ~~~~~~~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~i 153 (432)
....+...+. .+ ...+.+ .+.++|.-.+....+..+.+.+++|+|||- ..+|.+....+...+....|. .-+
T Consensus 496 ~vgL~~L~~r---l~--~~~~W~-~vLS~GEqQRlafARilL~kP~~v~LDEAT-sALDe~~e~~l~q~l~~~lp~-~tv 567 (604)
T COG4178 496 KVGLGDLAER---LD--EEDRWD-RVLSGGEQQRLAFARLLLHKPKWVFLDEAT-SALDEETEDRLYQLLKEELPD-ATV 567 (604)
T ss_pred HcCcHHHHHH---Hh--ccCcHh-hhcChhHHHHHHHHHHHHcCCCEEEEecch-hccChHHHHHHHHHHHhhCCC-CEE
Confidence 0001111110 00 001111 246788777777777778889999999998 678888877777777766665 555
Q ss_pred EEEecc
Q 014006 154 LITSAT 159 (432)
Q Consensus 154 i~~SAT 159 (432)
|-.+..
T Consensus 568 ISV~Hr 573 (604)
T COG4178 568 ISVGHR 573 (604)
T ss_pred EEeccc
Confidence 555543
No 444
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.30 E-value=0.0025 Score=52.24 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=32.2
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEeccc
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P 57 (432)
++..|+...|.||.|||||+++..++.......|....=-.|
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~ 66 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGED 66 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcc
Confidence 356789999999999999999998888777665544433334
No 445
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.30 E-value=0.00036 Score=63.10 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=44.8
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
.-.+.|...+..+......+.+++++||.- ..+|......+.+.+..... +.-+|+.|. +.+.+..+.
T Consensus 143 ~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~-~~tiiivsH--~~~~~~~~~ 210 (247)
T TIGR00972 143 LGLSGGQQQRLCIARALAVEPEVLLLDEPT-SALDPIATGKIEELIQELKK-KYTIVIVTH--NMQQAARIS 210 (247)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHh-cCeEEEEec--CHHHHHHhC
Confidence 346777777777766677889999999998 78898887776565555433 234444443 444444443
No 446
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.30 E-value=0.00061 Score=68.52 Aligned_cols=68 Identities=19% Similarity=0.122 Sum_probs=44.5
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.|. +.+.+..+.
T Consensus 140 ~LSgG~~qrv~la~aL~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiiivtH--d~~~~~~~~ 207 (510)
T PRK15439 140 SLEVADRQIVEILRGLMRDSRILILDEPT-ASLTPAETERLFSRIRELLAQGVGIVFISH--KLPEIRQLA 207 (510)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHhC
Confidence 35677776666666667789999999988 788988877766665554333344555544 444444443
No 447
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.30 E-value=0.0012 Score=62.35 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=43.7
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEeccc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~ 160 (432)
-.+.|+..+..+....+.+.+++|+||.- ..+|......+++.+...... +.-+|+.|.-+
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPt-s~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl 222 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPV-SALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL 222 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 35677777777666677888999999998 789988877766666554432 45666666544
No 448
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.00028 Score=67.20 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=44.2
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|. +.+.+..+.
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPt-s~LD~~~~~~l~~~L~~l~~~~g~tii~vTH--d~~~~~~~~ 196 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPL-ASLDLPRKRELLPYLERLAREINIPILYVSH--SLDEILRLA 196 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcCCeEEEEec--CHHHHHHhC
Confidence 45677776666666667788999999998 788888877665555544332 344555554 434444443
No 449
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.29 E-value=0.0028 Score=60.68 Aligned_cols=66 Identities=18% Similarity=0.294 Sum_probs=44.4
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhh
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKF 168 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~ 168 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+...+...... +..+|+.|. +.+....+
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~-s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTH--d~~ea~~l 211 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESL-SALDYKLRKQMQNELKALQRKLGITFVFVTH--DQEEALTM 211 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHHhcCCEEEEEeC--CHHHHHHh
Confidence 4677777777666677889999999998 789988877766655554432 355666554 44443333
No 450
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.29 E-value=0.0036 Score=57.92 Aligned_cols=70 Identities=11% Similarity=0.187 Sum_probs=45.4
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
+--.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.|. +.+.+..+.
T Consensus 143 ~~~LSgGq~qrl~laral~~~p~lLlLDEPt-~gLD~~~~~~l~~~l~~l~~~g~tvlivsH--~~~~~~~~~ 212 (287)
T PRK13641 143 PFELSGGQMRRVAIAGVMAYEPEILCLDEPA-AGLDPEGRKEMMQLFKDYQKAGHTVILVTH--NMDDVAEYA 212 (287)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeC--CHHHHHHhC
Confidence 3346677777777766677788999999998 788888777655555544333344555443 444444443
No 451
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.29 E-value=0.0028 Score=60.17 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=44.4
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhh
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKF 168 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~ 168 (432)
-.+.|...+..+......+.+++++||.- ..+|......+...+.....+ +..+|+.|. +.+....+
T Consensus 136 ~LSgGq~QRVaLARaL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tii~vTH--d~~e~~~l 203 (351)
T PRK11432 136 QISGGQQQRVALARALILKPKVLLFDEPL-SNLDANLRRSMREKIRELQQQFNITSLYVTH--DQSEAFAV 203 (351)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcC--CHHHHHHh
Confidence 35777777777777677889999999997 788988877765555544332 345555544 44433333
No 452
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.28 E-value=0.0028 Score=56.43 Aligned_cols=51 Identities=8% Similarity=0.202 Sum_probs=32.3
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHH
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV 69 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~ 69 (432)
+..|..+++.|++|+|||+++..++..... ++.+++++. +.+-..+..+.+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi~-~e~~~~~~~~~~ 71 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVS-TQLTTTEFIKQM 71 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEe-CCCCHHHHHHHH
Confidence 567889999999999999886666554322 344555554 333333444433
No 453
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.28 E-value=0.002 Score=58.53 Aligned_cols=60 Identities=17% Similarity=0.272 Sum_probs=41.5
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSAT 159 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT 159 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|..
T Consensus 148 ~LSgG~~qrv~laral~~~p~vlllDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~ 208 (253)
T TIGR02323 148 AFSGGMQQRLQIARNLVTRPRLVFMDEPT-GGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD 208 (253)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 35667766666666678889999999997 788888877766665554322 3556666543
No 454
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.27 E-value=0.003 Score=60.24 Aligned_cols=67 Identities=21% Similarity=0.325 Sum_probs=45.1
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC--CcEEEEEecccChHHHHhh
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS--KLKILITSATLDGEKVSKF 168 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~--~~~ii~~SAT~~~~~~~~~ 168 (432)
-.+.|+..+..+......+.+++++||.- ..+|......+...+...... +..+|+.|. +.+....+
T Consensus 137 ~LSgGq~QRvaLARAL~~~P~llLLDEP~-s~LD~~~r~~l~~~l~~l~~~~~g~til~vTH--d~~ea~~l 205 (362)
T TIGR03258 137 QLSGGMQQRIAIARAIAIEPDVLLLDEPL-SALDANIRANMREEIAALHEELPELTILCVTH--DQDDALTL 205 (362)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCcc-ccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeC--CHHHHHHh
Confidence 45677777777766678889999999998 789988877766666554432 245555544 44444333
No 455
>PRK10867 signal recognition particle protein; Provisional
Probab=97.27 E-value=0.0033 Score=60.95 Aligned_cols=123 Identities=19% Similarity=0.257 Sum_probs=66.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEE-e-cccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEE
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-V-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl-~-~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 98 (432)
..++++|++|+||||.+..++.......+.+++ + .-+.|..+.++.+.+++..+..+. . . ..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~---~--~----~~------- 164 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF---P--S----GD------- 164 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE---e--c----CC-------
Confidence 467889999999997766665544333233333 3 445677666666666665543321 0 0 00
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCC-CCHHHHHHHHHHHHhhhcCCcEEEEEecccC
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERS-LNTDILLGLVKRLVNLRASKLKILITSATLD 161 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~-~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~ 161 (432)
-..|..+...........++++||||=+- +. .+...... +..+.......--++.++|+..
T Consensus 165 ~~dp~~i~~~a~~~a~~~~~DvVIIDTaG-rl~~d~~lm~e-L~~i~~~v~p~evllVlda~~g 226 (433)
T PRK10867 165 GQDPVDIAKAALEEAKENGYDVVIVDTAG-RLHIDEELMDE-LKAIKAAVNPDEILLVVDAMTG 226 (433)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcccCHHHHHH-HHHHHHhhCCCeEEEEEecccH
Confidence 02344444322221123468899999987 44 34444333 4444443322234677778764
No 456
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.26 E-value=0.0018 Score=59.74 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=41.1
Q ss_pred CchhhhHHHHHHHHhcCC--EEEEEcCCCCCHHHHH--HHHHhhcCCCCCcEEEecccchhhh
Q 014006 4 LPILQYEETIVETVEQNP--VVVVIGETGSGKSTQL--SQILHRHGYTKSGIIGVTQPRRVAA 62 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~--~~ii~apTGsGKT~~~--~~~~~~~~~~~~~~vl~~~P~~~l~ 62 (432)
-|....|.-+++.+...+ .+.+.|+-|||||.++ ..+..-.......++++..|+....
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG 289 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG 289 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc
Confidence 467788999999998765 5777899999999443 3332222333445888888886654
No 457
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.26 E-value=0.0049 Score=51.55 Aligned_cols=147 Identities=25% Similarity=0.363 Sum_probs=79.4
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCC--CCcE-E-EecccchhhhHHHHHHHHHHhCCccC
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYT--KSGI-I-GVTQPRRVAAVSVARRVAQELGVRLG 78 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~--~~~~-v-l~~~P~~~l~~q~~~~~~~~~~~~~~ 78 (432)
+||..++.++-++ -....++|+|.+||||||++..+....... ++.+ . --+.++-+...+..+ +-+.-+..
T Consensus 22 slPa~r~l~~~Le--F~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k-~~~~~k~~-- 96 (233)
T COG3910 22 SLPAFRHLEERLE--FRAPITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAK-LHKRKKPP-- 96 (233)
T ss_pred cchHHHhhhhhcc--ccCceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHH-HhhcCCCC--
Confidence 5677777666222 356789999999999999999887655332 2222 0 011111111111111 11111111
Q ss_pred CeeeeeeeecccC---------C-----CCceEEEcC-HHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHH
Q 014006 79 EEVGYAIRFEDRT---------S-----ERTLIKYLT-DGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRL 143 (432)
Q Consensus 79 ~~~g~~~~~~~~~---------~-----~~~~i~v~T-~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~ 143 (432)
.|+-.+.+..- . ...++--.+ -+.+++.+.+ .+.+-++.|+||.- ..+.+...++++..+
T Consensus 97 --~g~FlRAEs~yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~--rf~~~GiYiLDEPE-a~LSp~RQlella~l 171 (233)
T COG3910 97 --IGFFLRAESFYNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHN--RFNGQGIYILDEPE-AALSPSRQLELLAIL 171 (233)
T ss_pred --cceEEehhHHHHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHH--HhccCceEEecCcc-ccCCHHHHHHHHHHH
Confidence 22222211100 0 011111111 2233333322 35677899999987 788999999988888
Q ss_pred HhhhcCCcEEEEEecc
Q 014006 144 VNLRASKLKILITSAT 159 (432)
Q Consensus 144 ~~~~~~~~~ii~~SAT 159 (432)
......+.|+|+.|..
T Consensus 172 ~~la~sGaQ~IiATHS 187 (233)
T COG3910 172 RDLADSGAQIIIATHS 187 (233)
T ss_pred HHHHhcCCeEEEEecC
Confidence 8877778999986654
No 458
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.25 E-value=0.0034 Score=55.86 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=21.3
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+..+++.||+|+|||+++..+....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999998887776554
No 459
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.004 Score=62.08 Aligned_cols=42 Identities=26% Similarity=0.479 Sum_probs=28.5
Q ss_pred CCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 113 PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 113 ~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
+.-.+++++||||+| ++..+....+++.+ ...|....+|+.+
T Consensus 115 p~~~~~kV~iIDE~~--~ls~~a~naLLk~L-Eepp~~~~fIlat 156 (509)
T PRK14958 115 PTKGRFKVYLIDEVH--MLSGHSFNALLKTL-EEPPSHVKFILAT 156 (509)
T ss_pred cccCCcEEEEEEChH--hcCHHHHHHHHHHH-hccCCCeEEEEEE
Confidence 445678999999999 66666677766644 4444446666654
No 460
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.25 E-value=0.00096 Score=60.46 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=42.1
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
.-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+..... +..+|+.|..
T Consensus 145 ~~LSgG~~qrv~laral~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~ 204 (250)
T PRK14247 145 GKLSGGQQQRLCIARALAFQPEVLLADEPT-ANLDPENTAKIESLFLELKK-DMTIVLVTHF 204 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 346777777777766677889999999998 78888887776666655433 3455555543
No 461
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.24 E-value=0.00042 Score=68.10 Aligned_cols=65 Identities=22% Similarity=0.368 Sum_probs=53.9
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHH
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA 70 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~ 70 (432)
+.+.|..+.++++++...+|+||+|+|||.....+........+..+++..|.-..+.|++.++-
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh 475 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIH 475 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHH
Confidence 67889999999999999999999999999444445544444456789999999999999998863
No 462
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.24 E-value=0.00071 Score=69.35 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=50.9
Q ss_pred chhhhHHHHHHHHhcC-CEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHH
Q 014006 5 PILQYEETIVETVEQN-PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ 71 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~-~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~ 71 (432)
.+.+.|.+++..+... ..++|.||+|+|||+.+..++.... ..+.+++++.|+...+.++.+++.+
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-KRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 3577788888877665 7899999999999965555544432 2355899999999999999888865
No 463
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.0052 Score=57.52 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=23.2
Q ss_pred HHHhcCC--EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 15 ETVEQNP--VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 15 ~~i~~~~--~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+..++ +.|+.||+|+||||++..+....
T Consensus 41 r~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~ 72 (436)
T COG2256 41 RAVEAGHLHSMILWGPPGTGKTTLARLIAGTT 72 (436)
T ss_pred HHHhcCCCceeEEECCCCCCHHHHHHHHHHhh
Confidence 4455554 67999999999999988776643
No 464
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.23 E-value=0.00069 Score=63.01 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=37.4
Q ss_pred HHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCC-CCCcEEEecccchhhh
Q 014006 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRHGY-TKSGIIGVTQPRRVAA 62 (432)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~-~~~~~vl~~~P~~~l~ 62 (432)
+..++..+.+++|+|+|||||||++..++..... .++.+++.+....|+.
T Consensus 137 L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 137 IRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccc
Confidence 4556777889999999999999999887765532 2345777777777753
No 465
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.23 E-value=0.00091 Score=63.99 Aligned_cols=60 Identities=25% Similarity=0.323 Sum_probs=42.6
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEeccc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~ 160 (432)
.+.|+..+..+......+.+++++||.- ..+|......+.+.+...... +.-+|+.|.-+
T Consensus 165 LSgGq~QRV~LARALa~~P~ILLlDEPt-s~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl 225 (382)
T TIGR03415 165 LSGGMQQRVGLARAFAMDADILLMDEPF-SALDPLIRTQLQDELLELQAKLNKTIIFVSHDL 225 (382)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCC-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 5666666666666667888999999998 789998888777766665432 34566665543
No 466
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.22 E-value=0.0011 Score=69.41 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=79.5
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHH---------------HHHHhCCccCCe-
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR---------------VAQELGVRLGEE- 80 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~---------------~~~~~~~~~~~~- 80 (432)
+.+|+.+.++|++||||||++..+........|...+--.+.+..-.+..++ +.+.........
T Consensus 480 i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~ 559 (694)
T TIGR01846 480 IKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAP 559 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCC
Confidence 5689999999999999999999888877665554433333332221111110 001000000000
Q ss_pred ----------eeeeeeecccCCCCceE------EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHH
Q 014006 81 ----------VGYAIRFEDRTSERTLI------KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (432)
Q Consensus 81 ----------~g~~~~~~~~~~~~~~i------~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~ 144 (432)
.|-. ..-.....+.+- .-.+.|...+..+.+..+.+.+++++||+- ..+|......+.+.+.
T Consensus 560 ~~~i~~a~~~~~l~-~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpt-s~LD~~~~~~i~~~l~ 637 (694)
T TIGR01846 560 FEHVIHAAKLAGAH-DFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEAT-SALDYESEALIMRNMR 637 (694)
T ss_pred HHHHHHHHHHcChH-HHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCC-cCCCHHHHHHHHHHHH
Confidence 0000 000000000111 125677777777777778899999999998 7899888777777766
Q ss_pred hhhcCCcEEEEEeccc
Q 014006 145 NLRASKLKILITSATL 160 (432)
Q Consensus 145 ~~~~~~~~ii~~SAT~ 160 (432)
...+ +..+|..|.-+
T Consensus 638 ~~~~-~~t~i~itH~~ 652 (694)
T TIGR01846 638 EICR-GRTVIIIAHRL 652 (694)
T ss_pred HHhC-CCEEEEEeCCh
Confidence 5543 35566665543
No 467
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.0028 Score=57.34 Aligned_cols=143 Identities=18% Similarity=0.259 Sum_probs=77.3
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhh---hHHHHH-H---HHHHhCCccCCee----eee
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA---AVSVAR-R---VAQELGVRLGEEV----GYA 84 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l---~~q~~~-~---~~~~~~~~~~~~~----g~~ 84 (432)
.+..|+.+-|.|..|+||||++..+.....++.|...+.-.....+ .....+ + +.+.|+.....++ .+.
T Consensus 28 ~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~P 107 (339)
T COG1135 28 EIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP 107 (339)
T ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhh
Confidence 4678999999999999999999988777666666544443221111 111111 1 1233332222222 111
Q ss_pred eeecccCCC--C------------ceEE-----EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHH---HHHHHHH
Q 014006 85 IRFEDRTSE--R------------TLIK-----YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI---LLGLVKR 142 (432)
Q Consensus 85 ~~~~~~~~~--~------------~~i~-----v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~---~~~~l~~ 142 (432)
......... . .+-. =.+-|+-.+....+....+.+++..|||- ..+|+.. .+++++.
T Consensus 108 Leiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaT-SALDP~TT~sIL~LL~~ 186 (339)
T COG1135 108 LELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEAT-SALDPETTQSILELLKD 186 (339)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCcc-ccCChHHHHHHHHHHHH
Confidence 110000000 0 0000 02233334444444456788899999998 7788876 4444555
Q ss_pred HHhhhcCCcEEEEEecccC
Q 014006 143 LVNLRASKLKILITSATLD 161 (432)
Q Consensus 143 ~~~~~~~~~~ii~~SAT~~ 161 (432)
+-+.. +.-+++.|..++
T Consensus 187 In~~l--glTIvlITHEm~ 203 (339)
T COG1135 187 INREL--GLTIVLITHEME 203 (339)
T ss_pred HHHHc--CCEEEEEechHH
Confidence 54444 577888887764
No 468
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.22 E-value=0.0057 Score=63.75 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=27.0
Q ss_pred CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEE
Q 014006 114 DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (432)
Q Consensus 114 ~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~ 156 (432)
.-.+..++||||+| ++..+.+..+++.+-. .+...++|+.
T Consensus 116 ~~gk~KViIIDEAh--~LT~eAqNALLKtLEE-PP~~vrFILa 155 (944)
T PRK14949 116 SRGRFKVYLIDEVH--MLSRSSFNALLKTLEE-PPEHVKFLLA 155 (944)
T ss_pred hcCCcEEEEEechH--hcCHHHHHHHHHHHhc-cCCCeEEEEE
Confidence 34678999999999 5667777776665543 3333555554
No 469
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.21 E-value=0.00035 Score=66.67 Aligned_cols=66 Identities=23% Similarity=0.284 Sum_probs=43.7
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhh
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKF 168 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~ 168 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+...... +..+|+.|. +.+.+..+
T Consensus 132 LSgGqkqRvalAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~L~~l~~~~g~tiiivtH--~~~~~~~~ 198 (354)
T TIGR02142 132 LSGGEKQRVAIGRALLSSPRLLLMDEPL-AALDDPRKYEILPYLERLHAEFGIPILYVSH--SLQEVLRL 198 (354)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCC-cCCCHHHHHHHHHHHHHHHHhcCCEEEEEec--CHHHHHHh
Confidence 4666666666666667788999999998 789998877766666554432 344555554 43334433
No 470
>PLN03232 ABC transporter C family member; Provisional
Probab=97.21 E-value=0.0013 Score=74.33 Aligned_cols=142 Identities=20% Similarity=0.176 Sum_probs=78.7
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHH-HH---H---HhC------CccCCeeee
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR-VA---Q---ELG------VRLGEEVGY 83 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~-~~---~---~~~------~~~~~~~g~ 83 (432)
+.+|+.+.|+|+|||||||++..++.......|...+--.+.+....+..++ ++ + .+. ...+.....
T Consensus 1259 I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sd 1338 (1495)
T PLN03232 1259 VSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHND 1338 (1495)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCH
Confidence 5689999999999999999999888877766665544445544433222221 10 0 000 000000000
Q ss_pred e--------eeec---ccCCCCceEE------EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhh
Q 014006 84 A--------IRFE---DRTSERTLIK------YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNL 146 (432)
Q Consensus 84 ~--------~~~~---~~~~~~~~i~------v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~ 146 (432)
. .... .....+-+-. -.+.|+-.+..+.+..+++.+++|+|||- ..+|.+.-..+.+.+...
T Consensus 1339 eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEAT-SaLD~~Te~~Iq~~L~~~ 1417 (1495)
T PLN03232 1339 ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEAT-ASVDVRTDSLIQRTIREE 1417 (1495)
T ss_pred HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHHHHHH
Confidence 0 0000 0000011111 14567666666666677888999999998 678887766655555554
Q ss_pred hcCCcEEEEEeccc
Q 014006 147 RASKLKILITSATL 160 (432)
Q Consensus 147 ~~~~~~ii~~SAT~ 160 (432)
.+ +.-+|..+.-+
T Consensus 1418 ~~-~~TvI~IAHRl 1430 (1495)
T PLN03232 1418 FK-SCTMLVIAHRL 1430 (1495)
T ss_pred cC-CCEEEEEeCCH
Confidence 43 35566666544
No 471
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21 E-value=0.0049 Score=61.13 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=22.5
Q ss_pred HhcCC---EEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 17 VEQNP---VVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 17 i~~~~---~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
+.+++ .+++.||.|+|||+++..+.....
T Consensus 37 i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 37 ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred HHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 45554 689999999999988877766553
No 472
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.20 E-value=0.00098 Score=60.10 Aligned_cols=66 Identities=21% Similarity=0.223 Sum_probs=44.6
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhh
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~ 168 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.|. +.+.+..+
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH--~~~~~~~~ 210 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEID-SGLDIDALKIVAEGINRLREPDRSFLIITH--YQRLLNYI 210 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHCCcEEEEEEe--cHHHHHhh
Confidence 6777777777666677888999999998 789988877766666554433344555444 44444444
No 473
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.19 E-value=0.0022 Score=58.68 Aligned_cols=68 Identities=24% Similarity=0.246 Sum_probs=43.3
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+...... +.-+|+.|. +.+.+..+.
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH--~~~~~~~~~ 218 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAV-SNLDMVLQAVILELLRKLQQAFGTAYLFITH--DLRLVQSFC 218 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC--CHHHHHHHh
Confidence 35667666666666667788999999997 788888766655555554332 344555554 333344433
No 474
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.19 E-value=0.0051 Score=58.57 Aligned_cols=68 Identities=22% Similarity=0.267 Sum_probs=44.7
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
-.+.|+..+..+......+.+++++||.- ..+|......+.+.+...... +..+|+. |.+.+.+..+.
T Consensus 136 ~LSgGq~QRvalArAL~~~P~llLLDEP~-s~LD~~~r~~l~~~L~~l~~~~g~tii~v--THd~~ea~~~~ 204 (353)
T PRK10851 136 QLSGGQKQRVALARALAVEPQILLLDEPF-GALDAQVRKELRRWLRQLHEELKFTSVFV--THDQEEAMEVA 204 (353)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHHhcCCEEEEE--eCCHHHHHHhC
Confidence 35677777777666677889999999998 789988877765555554332 2445554 44544444443
No 475
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.19 E-value=0.0002 Score=66.84 Aligned_cols=146 Identities=20% Similarity=0.263 Sum_probs=78.2
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEe------cccchhhhHHHHHHHHHHhCCccCCeeeeeeeecc
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV------TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED 89 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~------~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~ 89 (432)
.+.+|+.+.+.||.||||||++..++.....+.|...+- +.|-+--..-+++..+-+-..++..+++|+.+...
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~ 106 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK 106 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC
Confidence 367899999999999999999999988776665533221 22211111111111111112233333333322110
Q ss_pred cCC--------------------CCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC
Q 014006 90 RTS--------------------ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (432)
Q Consensus 90 ~~~--------------------~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~ 149 (432)
... ......=.+-|+-.+..+.+....+..++.+||.= ..+|......+-..+.....+
T Consensus 107 ~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPl-SaLD~kLR~~mr~Elk~lq~~ 185 (352)
T COG3842 107 KLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPL-SALDAKLREQMRKELKELQRE 185 (352)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcc-cchhHHHHHHHHHHHHHHHHh
Confidence 000 00111113455666666666677888999999987 678888766655555443322
Q ss_pred -CcEEEEEecccChHH
Q 014006 150 -KLKILITSATLDGEK 164 (432)
Q Consensus 150 -~~~ii~~SAT~~~~~ 164 (432)
+.-+|.. |.+.++
T Consensus 186 ~giT~i~V--THDqeE 199 (352)
T COG3842 186 LGITFVYV--THDQEE 199 (352)
T ss_pred cCCeEEEE--ECCHHH
Confidence 3445554 445443
No 476
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.19 E-value=0.0018 Score=58.92 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=40.7
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
-.+.|...+..+....+.+.+++++||.- ..+|......+.+.+.... .+..+|+.|..+
T Consensus 156 ~LS~G~~qrl~laral~~~p~llllDEPt-~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~ 215 (257)
T cd03288 156 NFSVGQRQLFCLARAFVRKSSILIMDEAT-ASIDMATENILQKVVMTAF-ADRTVVTIAHRV 215 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHhc-CCCEEEEEecCh
Confidence 35677777777766677889999999998 7888887666555554432 235555555443
No 477
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.18 E-value=0.0034 Score=61.67 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=25.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcCC-CCCcEEEeccc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHGY-TKSGIIGVTQP 57 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~~-~~~~~vl~~~P 57 (432)
+.+++.|++|+|||.++..+...... .++.+++++..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~ 179 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG 179 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 45889999999999877766554322 34567776644
No 478
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0014 Score=56.56 Aligned_cols=43 Identities=28% Similarity=0.324 Sum_probs=33.3
Q ss_pred CCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q 014006 115 LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (432)
Q Consensus 115 l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SA 158 (432)
+-+.++.|+||.| ..+|-+.+..+-+-+...+..+.-+++.|.
T Consensus 160 ~lePkl~ILDE~D-SGLDIdalk~V~~~i~~lr~~~~~~liITH 202 (251)
T COG0396 160 LLEPKLAILDEPD-SGLDIDALKIVAEGINALREEGRGVLIITH 202 (251)
T ss_pred hcCCCEEEecCCC-cCccHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 4467899999999 899999988877777666666566677654
No 479
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.00057 Score=58.26 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=47.5
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChH----HHHhhccCCCee
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGE----KVSKFFSNCPTL 175 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~----~~~~~~~~~~~i 175 (432)
.+-|+-.++...+...-+.+++.+||.- ..+|+-.-.. ++.+....+++.-+|..|..+... +...||-...++
T Consensus 150 LSGGQQQRLcIARalAv~PeVlLmDEPt-SALDPIsT~k-IEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~Lv 227 (253)
T COG1117 150 LSGGQQQRLCIARALAVKPEVLLMDEPT-SALDPISTLK-IEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELV 227 (253)
T ss_pred CChhHHHHHHHHHHHhcCCcEEEecCcc-cccCchhHHH-HHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEE
Confidence 4556666666655556678899999986 6777766555 333333333457888888776432 233455455555
Q ss_pred ecC
Q 014006 176 NVP 178 (432)
Q Consensus 176 ~~~ 178 (432)
+..
T Consensus 228 E~g 230 (253)
T COG1117 228 EFG 230 (253)
T ss_pred EEc
Confidence 544
No 480
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.17 E-value=0.00071 Score=54.39 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhhc
Q 014006 23 VVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 23 ~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+++.||+|+|||+++..++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5789999999999988887765
No 481
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.17 E-value=0.0074 Score=61.21 Aligned_cols=48 Identities=27% Similarity=0.413 Sum_probs=30.8
Q ss_pred HHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 107 REILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 107 ~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
..+...+...+.+++||||+| .+...-...+++.+. ..+....+|+.+
T Consensus 122 e~~~~~P~~a~~KVvIIDEad--~Ls~~a~naLLKtLE-ePp~~~~fIl~t 169 (598)
T PRK09111 122 ESVRYRPVSARYKVYIIDEVH--MLSTAAFNALLKTLE-EPPPHVKFIFAT 169 (598)
T ss_pred HHHHhchhcCCcEEEEEEChH--hCCHHHHHHHHHHHH-hCCCCeEEEEEe
Confidence 333445577889999999999 555555666555543 334446666655
No 482
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.17 E-value=0.0024 Score=56.86 Aligned_cols=34 Identities=26% Similarity=0.516 Sum_probs=26.4
Q ss_pred HHHHHHHhc--CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 11 ETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 11 ~~i~~~i~~--~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+++.+.+.. ++.++|.||.|+|||+++..++...
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 445555555 4789999999999999888777765
No 483
>PLN03130 ABC transporter C family member; Provisional
Probab=97.17 E-value=0.0014 Score=74.34 Aligned_cols=143 Identities=18% Similarity=0.156 Sum_probs=78.5
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHH-HH---H---HhC------CccCCeee
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR-VA---Q---ELG------VRLGEEVG 82 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~-~~---~---~~~------~~~~~~~g 82 (432)
.+..|+.+.|+|+|||||||++..+........|...+--.+.+.+..+..++ ++ + .|. ...+....
T Consensus 1261 ~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~t 1340 (1622)
T PLN03130 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHN 1340 (1622)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCC
Confidence 35689999999999999999999888877666655444444444332222111 10 0 000 00000000
Q ss_pred ee--------eeec---ccCCCCceE------EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 83 YA--------IRFE---DRTSERTLI------KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 83 ~~--------~~~~---~~~~~~~~i------~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
.. .... .....+-+- .-.+.|+-.+..+.+..+.+.+++|+|||- ..+|.+.-..+.+.+.+
T Consensus 1341 deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEAT-SaLD~~Te~~Iq~~I~~ 1419 (1622)
T PLN03130 1341 DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEAT-AAVDVRTDALIQKTIRE 1419 (1622)
T ss_pred HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCC-CCCCHHHHHHHHHHHHH
Confidence 00 0000 000001111 114567666666666677888999999998 67888876665566655
Q ss_pred hhcCCcEEEEEeccc
Q 014006 146 LRASKLKILITSATL 160 (432)
Q Consensus 146 ~~~~~~~ii~~SAT~ 160 (432)
..+ +.-+|..+.-+
T Consensus 1420 ~~~-~~TvI~IAHRL 1433 (1622)
T PLN03130 1420 EFK-SCTMLIIAHRL 1433 (1622)
T ss_pred HCC-CCEEEEEeCCh
Confidence 544 35566665544
No 484
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.17 E-value=0.0035 Score=58.94 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=22.4
Q ss_pred HHHHHHhcCC---EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 12 TIVETVEQNP---VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 12 ~i~~~i~~~~---~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+...+.+++ .+++.||+|+|||+++..+....
T Consensus 32 ~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 32 TFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3444455553 45558999999998887776543
No 485
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.17 E-value=0.0035 Score=56.17 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=33.0
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHH
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV 69 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~ 69 (432)
+..|..+++.|++|||||+++.+++..... .+.+++++.- .+-..++.+++
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~-e~~~~~~~~~~ 72 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITT-ENTSKSYLKQM 72 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEc-CCCHHHHHHHH
Confidence 446789999999999999888887665433 3556655532 22334444443
No 486
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.16 E-value=0.0021 Score=64.37 Aligned_cols=150 Identities=18% Similarity=0.212 Sum_probs=78.3
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhh-HHHHHHHHHHhCC-c----------cCCeeeee
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA-VSVARRVAQELGV-R----------LGEEVGYA 84 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~-~q~~~~~~~~~~~-~----------~~~~~g~~ 84 (432)
+.+|+.+.+.||+||||||++..+........|...+...+..... ....+.+.-.+.. . .+..+...
T Consensus 26 i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 105 (490)
T PRK10938 26 LNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEI 105 (490)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHh
Confidence 5689999999999999999999888876555443322222111000 0111111000000 0 00000000
Q ss_pred eee----ccc-----------CCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC
Q 014006 85 IRF----EDR-----------TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS 149 (432)
Q Consensus 85 ~~~----~~~-----------~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~ 149 (432)
... ... ...+..+--.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......
T Consensus 106 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~ 184 (490)
T PRK10938 106 IQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPF-DGLDVASRQQLAELLASLHQS 184 (490)
T ss_pred cccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHhc
Confidence 000 000 0011223345666666666655567788999999998 788888877766666554433
Q ss_pred CcEEEEEecccChHHHHhhc
Q 014006 150 KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 150 ~~~ii~~SAT~~~~~~~~~~ 169 (432)
+.-+|+.|. +.+.+.++.
T Consensus 185 g~tvii~tH--~~~~~~~~~ 202 (490)
T PRK10938 185 GITLVLVLN--RFDEIPDFV 202 (490)
T ss_pred CCeEEEEeC--CHHHHHhhC
Confidence 345555554 444444443
No 487
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.16 E-value=0.0016 Score=57.69 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=42.3
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHH-HHhhh-cCCcEEEEEeccc
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR-LVNLR-ASKLKILITSATL 160 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~-~~~~~-~~~~~ii~~SAT~ 160 (432)
+.-.+.|...+..+....+.+.+++++||.- ..+|......+++. ++... ..+..+|+.|.-.
T Consensus 138 ~~~LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~ 202 (218)
T cd03290 138 GINLSGGQRQRICVARALYQNTNIVFLDDPF-SALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKL 202 (218)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc-cccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCCh
Confidence 3446778777777777778889999999998 78888876665552 33322 2234566666544
No 488
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.16 E-value=0.0034 Score=56.77 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=41.5
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.|.-
T Consensus 146 LS~G~~qrv~laral~~~p~illLDEPt-~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~ 204 (248)
T PRK09580 146 FSGGEKKRNDILQMAVLEPELCILDESD-SGLDIDALKIVADGVNSLRDGKRSFIIVTHY 204 (248)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 6778777777777778889999999998 7888888777655554443333455555543
No 489
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.16 E-value=0.0037 Score=65.63 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=28.1
Q ss_pred CCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 112 NPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 112 ~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
.+...+++++||||+| .+...-...+++.+. ..+....+|+.+
T Consensus 115 ~p~~~~~KV~IIDEad--~lt~~a~NaLLK~LE-EpP~~~~fIl~t 157 (824)
T PRK07764 115 APAESRYKIFIIDEAH--MVTPQGFNALLKIVE-EPPEHLKFIFAT 157 (824)
T ss_pred chhcCCceEEEEechh--hcCHHHHHHHHHHHh-CCCCCeEEEEEe
Confidence 3455788999999999 556666666555544 344445666655
No 490
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.16 E-value=0.002 Score=54.10 Aligned_cols=45 Identities=22% Similarity=0.280 Sum_probs=30.8
Q ss_pred CCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChH
Q 014006 116 SPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGE 163 (432)
Q Consensus 116 ~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~ 163 (432)
.+.+++++||.- +..|......+...+.....++.++++. |...+
T Consensus 98 ~~~~llllDEp~-~gld~~~~~~l~~~l~~~~~~~~~vii~--TH~~~ 142 (162)
T cd03227 98 KPRPLYILDEID-RGLDPRDGQALAEAILEHLVKGAQVIVI--THLPE 142 (162)
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEE--cCCHH
Confidence 477999999998 7888888777666666554333455554 54444
No 491
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0057 Score=61.62 Aligned_cols=42 Identities=21% Similarity=0.453 Sum_probs=28.9
Q ss_pred CCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 113 PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 113 ~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
+...+++++||||+| ++.......++|.+. ..+.+..+|+.|
T Consensus 120 P~~gr~KViIIDEah--~Ls~~AaNALLKTLE-EPP~~v~FILaT 161 (700)
T PRK12323 120 PTAGRFKVYMIDEVH--MLTNHAFNAMLKTLE-EPPEHVKFILAT 161 (700)
T ss_pred hhcCCceEEEEEChH--hcCHHHHHHHHHhhc-cCCCCceEEEEe
Confidence 356678999999999 566666777666543 344446666665
No 492
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.15 E-value=0.0034 Score=62.03 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=25.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcCCC-CCcEEEecc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHGYT-KSGIIGVTQ 56 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~~~-~~~~vl~~~ 56 (432)
+.+++.||+|+|||.++..+....... .+.+++++.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 468999999999998777666554322 245666663
No 493
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.15 E-value=0.001 Score=60.42 Aligned_cols=60 Identities=22% Similarity=0.250 Sum_probs=43.2
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.|..+
T Consensus 152 LSgG~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~ 211 (252)
T CHL00131 152 FSGGEKKRNEILQMALLDSELAILDETD-SGLDIDALKIIAEGINKLMTSENSIILITHYQ 211 (252)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 6778777777766677889999999998 78998887776666655443345566666543
No 494
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0062 Score=58.37 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=22.3
Q ss_pred HHHhcCC---EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 15 ETVEQNP---VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 15 ~~i~~~~---~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+..++ .+++.||.|+|||+++..++...
T Consensus 30 ~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 30 NGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred HHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 3444543 46899999999998888777654
No 495
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.14 E-value=0.0049 Score=62.66 Aligned_cols=42 Identities=26% Similarity=0.519 Sum_probs=27.9
Q ss_pred CCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 113 PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 113 ~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
+...+.+++||||+| .+.......+++.+.. .+....+|+.+
T Consensus 115 P~~gk~KVIIIDEad--~Ls~~A~NALLKtLEE-Pp~~v~fILaT 156 (709)
T PRK08691 115 PTAGKYKVYIIDEVH--MLSKSAFNAMLKTLEE-PPEHVKFILAT 156 (709)
T ss_pred hhhCCcEEEEEECcc--ccCHHHHHHHHHHHHh-CCCCcEEEEEe
Confidence 356788999999999 5666556665555543 33446666655
No 496
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.14 E-value=0.0066 Score=58.60 Aligned_cols=123 Identities=17% Similarity=0.192 Sum_probs=65.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEE-e-cccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEE
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-V-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl-~-~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 98 (432)
..+.++|++|+||||.+..++...... +.+++ + .-+.|..+.++.+.+++..+..+. + ....
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~---~-------~~~~----- 164 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRK-GFKPCLVCADTFRAGAFDQLKQNATKARIPFY---G-------SYTE----- 164 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEcCcccchhHHHHHHHHhhccCCeEE---e-------ecCC-----
Confidence 467899999999997766665544322 33333 3 345576666666655555443221 0 0000
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccC
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~ 161 (432)
..|..+.........-.++++||||=+- |.-....+..-+..+.........++.++||..
T Consensus 165 -~dp~~i~~~~l~~~~~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G 225 (429)
T TIGR01425 165 -SDPVKIASEGVEKFKKENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG 225 (429)
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEeccccC
Confidence 0121221111111011468999999998 444333344445555554433356777888874
No 497
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=97.14 E-value=0.00082 Score=61.70 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=40.0
Q ss_pred hHHHHHHH-HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHH
Q 014006 9 YEETIVET-VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVS 64 (432)
Q Consensus 9 ~q~~i~~~-i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q 64 (432)
-+.+++.. +....+++++|.|||||||++..++....... +++++..+.+|..+
T Consensus 161 ~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~e--RvItiEDtaELql~ 215 (355)
T COG4962 161 RAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDE--RVITIEDTAELQLA 215 (355)
T ss_pred HHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcc--cEEEEeehhhhccC
Confidence 34444444 44555999999999999999999888775544 88999888776433
No 498
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.14 E-value=0.00084 Score=61.30 Aligned_cols=61 Identities=18% Similarity=0.264 Sum_probs=41.7
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEeccc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~ 160 (432)
-.+.|...+..+......+.+++++||.- ..+|......+.+.+...... +..+|+.|..+
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~ 213 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPI-ASLDPESARIVMDTLRDINQNDGITVVVTLHQV 213 (262)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEecCcc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 35666666666665567788999999998 789988877766665554322 35566666544
No 499
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.14 E-value=0.0022 Score=58.81 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=39.6
Q ss_pred EcCHHHHHHHHhcCCCC---------CCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEeccc
Q 014006 99 YLTDGVLLREILSNPDL---------SPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l---------~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~ 160 (432)
-.+.|...+..+..... .+.+++++||.- ..+|......+.+.+...... +..+|+.|..+
T Consensus 145 ~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~ 215 (272)
T PRK13547 145 TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT-AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP 215 (272)
T ss_pred cCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCcc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 34566655555544444 478999999998 788888877766666554432 34566665543
No 500
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.14 E-value=0.00083 Score=63.20 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=36.0
Q ss_pred HHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhh
Q 014006 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA 62 (432)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~ 62 (432)
+..++..+.+++|+|||||||||++..++..... ..+++.+..+.++.
T Consensus 155 l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~~--~~rivtiEd~~El~ 202 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPP--QERLITIEDTLELV 202 (344)
T ss_pred HHHHHHcCCeEEEECCCCccHHHHHHHHHcccCC--CCCEEEECCCcccc
Confidence 3345667899999999999999999888776543 34666777776653
Done!