Query 014006
Match_columns 432
No_of_seqs 269 out of 3036
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 03:47:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 1.1E-71 3.9E-76 575.5 43.9 425 3-430 92-524 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 6.6E-54 2.3E-58 445.4 17.9 412 5-430 30-509 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 4.2E-53 1.4E-57 438.0 21.3 409 5-430 25-490 (702)
4 2zj8_A DNA helicase, putative 100.0 1.2E-51 4.3E-56 428.2 14.3 410 5-430 23-493 (720)
5 2db3_A ATP-dependent RNA helic 100.0 9.2E-46 3.1E-50 361.9 25.6 307 6-347 79-407 (434)
6 3fht_A ATP-dependent RNA helic 100.0 2.2E-45 7.5E-50 357.8 23.4 318 5-348 47-380 (412)
7 3pey_A ATP-dependent RNA helic 100.0 1E-44 3.5E-49 351.0 23.9 317 5-349 27-358 (395)
8 2j0s_A ATP-dependent RNA helic 100.0 3.9E-45 1.3E-49 356.0 17.7 313 6-351 60-387 (410)
9 3eiq_A Eukaryotic initiation f 100.0 1.6E-45 5.6E-50 359.0 15.0 315 4-351 61-391 (414)
10 3fmp_B ATP-dependent RNA helic 100.0 1.6E-45 5.5E-50 365.6 14.5 317 6-349 115-448 (479)
11 1s2m_A Putative ATP-dependent 100.0 9.5E-44 3.2E-48 345.0 26.6 312 6-351 44-369 (400)
12 3l9o_A ATP-dependent RNA helic 100.0 9.9E-45 3.4E-49 386.6 20.0 327 3-348 182-598 (1108)
13 2v1x_A ATP-dependent DNA helic 100.0 3.9E-44 1.3E-48 360.4 21.9 307 6-350 45-377 (591)
14 1xti_A Probable ATP-dependent 100.0 1.1E-43 3.7E-48 343.5 23.9 310 6-349 31-359 (391)
15 2i4i_A ATP-dependent RNA helic 100.0 3.3E-44 1.1E-48 350.1 19.0 313 5-351 37-387 (417)
16 4f92_B U5 small nuclear ribonu 100.0 1.3E-43 4.5E-48 390.2 23.5 416 7-430 928-1425(1724)
17 1hv8_A Putative ATP-dependent 100.0 5.2E-43 1.8E-47 335.6 24.2 311 5-351 28-349 (367)
18 4f92_B U5 small nuclear ribonu 100.0 2.6E-43 8.7E-48 388.0 24.6 416 6-430 80-594 (1724)
19 3i5x_A ATP-dependent RNA helic 100.0 4E-43 1.4E-47 355.4 20.5 319 6-350 95-452 (563)
20 3o8b_A HCV NS3 protease/helica 100.0 3.3E-43 1.1E-47 351.5 19.3 298 3-351 215-518 (666)
21 3sqw_A ATP-dependent RNA helic 100.0 6.6E-43 2.3E-47 354.1 20.1 318 6-350 44-401 (579)
22 1fuu_A Yeast initiation factor 100.0 2.9E-44 9.9E-49 347.8 9.5 314 5-351 43-370 (394)
23 3fho_A ATP-dependent RNA helic 100.0 1.4E-43 4.7E-48 353.0 13.6 316 6-347 142-470 (508)
24 2xgj_A ATP-dependent RNA helic 100.0 2.5E-42 8.5E-47 365.2 21.4 324 4-347 85-499 (1010)
25 4a4z_A Antiviral helicase SKI2 100.0 2.4E-43 8.2E-48 373.0 12.1 324 3-345 37-490 (997)
26 1oyw_A RECQ helicase, ATP-depe 100.0 1.5E-42 5E-47 345.7 16.9 302 6-349 26-345 (523)
27 2z0m_A 337AA long hypothetical 100.0 2.3E-42 8E-47 327.2 17.3 297 5-345 16-321 (337)
28 4a2p_A RIG-I, retinoic acid in 100.0 2.2E-41 7.4E-46 342.4 22.2 330 1-351 3-512 (556)
29 2ykg_A Probable ATP-dependent 100.0 9.7E-42 3.3E-46 353.8 17.0 320 4-349 12-518 (696)
30 2jlq_A Serine protease subunit 100.0 1.6E-41 5.6E-46 332.7 17.0 290 13-346 11-310 (451)
31 2whx_A Serine protease/ntpase/ 100.0 9.8E-41 3.4E-45 336.7 20.5 297 3-345 172-476 (618)
32 3oiy_A Reverse gyrase helicase 100.0 2.7E-41 9.3E-46 329.1 15.8 300 4-347 20-365 (414)
33 3tbk_A RIG-I helicase domain; 100.0 9E-41 3.1E-45 337.7 19.6 329 2-351 1-511 (555)
34 2z83_A Helicase/nucleoside tri 100.0 2.6E-40 9E-45 324.6 20.8 292 13-347 14-313 (459)
35 1wp9_A ATP-dependent RNA helic 100.0 2.2E-39 7.7E-44 321.9 20.8 317 4-351 8-479 (494)
36 4a2q_A RIG-I, retinoic acid in 100.0 2.3E-39 8E-44 339.3 21.1 327 4-351 247-753 (797)
37 1yks_A Genome polyprotein [con 100.0 7.1E-39 2.4E-43 312.6 21.5 286 16-345 4-297 (440)
38 3rc3_A ATP-dependent RNA helic 100.0 1E-39 3.5E-44 330.2 14.4 315 17-376 152-475 (677)
39 4gl2_A Interferon-induced heli 100.0 2.1E-40 7.3E-45 343.9 7.1 318 3-344 5-516 (699)
40 2v6i_A RNA helicase; membrane, 100.0 2E-38 6.7E-43 308.9 20.2 281 19-344 1-288 (431)
41 4a2w_A RIG-I, retinoic acid in 100.0 5.4E-38 1.9E-42 332.3 23.3 325 4-349 247-751 (936)
42 2wv9_A Flavivirin protease NS2 100.0 4.6E-38 1.6E-42 319.1 19.0 292 12-345 227-531 (673)
43 4ddu_A Reverse gyrase; topoiso 100.0 2.9E-37 9.8E-42 329.2 15.7 270 5-302 78-388 (1104)
44 1gm5_A RECG; helicase, replica 100.0 1.4E-37 4.9E-42 319.2 9.7 299 4-345 367-695 (780)
45 2eyq_A TRCF, transcription-rep 100.0 1.3E-35 4.3E-40 318.5 22.0 300 6-348 604-923 (1151)
46 1gku_B Reverse gyrase, TOP-RG; 100.0 6.4E-37 2.2E-41 326.7 7.8 264 8-301 59-352 (1054)
47 1tf5_A Preprotein translocase 100.0 3E-35 1E-39 296.6 18.9 307 6-348 84-546 (844)
48 2fwr_A DNA repair protein RAD2 100.0 8.2E-36 2.8E-40 295.3 12.3 294 4-351 92-458 (472)
49 2oca_A DAR protein, ATP-depend 100.0 1.7E-35 5.7E-40 296.0 10.2 302 5-345 113-453 (510)
50 2fsf_A Preprotein translocase 100.0 5E-34 1.7E-38 286.9 18.3 307 6-348 75-584 (853)
51 1nkt_A Preprotein translocase 100.0 9.6E-33 3.3E-37 277.9 20.4 306 6-348 112-618 (922)
52 3h1t_A Type I site-specific re 100.0 4.2E-33 1.4E-37 283.1 16.4 301 4-337 177-545 (590)
53 3dmq_A RNA polymerase-associat 100.0 2.7E-30 9.2E-35 273.9 13.8 314 3-348 151-616 (968)
54 3llm_A ATP-dependent RNA helic 100.0 3.5E-28 1.2E-32 217.5 17.7 172 3-177 59-235 (235)
55 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.8E-27 6.2E-32 250.5 21.1 313 5-345 271-707 (1038)
56 1z63_A Helicase of the SNF2/RA 100.0 4E-28 1.4E-32 241.9 14.4 309 5-351 37-457 (500)
57 3eaq_A Heat resistant RNA depe 100.0 7.8E-29 2.7E-33 217.7 7.3 172 202-404 20-211 (212)
58 3jux_A Protein translocase sub 99.9 1.2E-25 4E-30 221.9 21.7 165 151-348 410-588 (822)
59 3i32_A Heat resistant RNA depe 99.9 8.1E-28 2.8E-32 220.9 5.7 174 205-409 20-213 (300)
60 1c4o_A DNA nucleotide excision 99.9 7.9E-25 2.7E-29 223.0 24.6 168 150-348 380-551 (664)
61 1z3i_X Similar to RAD54-like; 99.9 3.1E-23 1.1E-27 211.5 23.2 113 211-351 414-532 (644)
62 3mwy_W Chromo domain-containin 99.9 8.8E-24 3E-28 220.8 17.3 313 4-351 235-688 (800)
63 3iuy_A Probable ATP-dependent 99.9 1.4E-23 4.6E-28 187.0 12.8 168 5-174 42-225 (228)
64 2rb4_A ATP-dependent RNA helic 99.9 8.4E-24 2.9E-28 180.1 10.9 129 200-350 21-150 (175)
65 2d7d_A Uvrabc system protein B 99.9 1E-23 3.6E-28 214.7 13.2 168 150-348 386-557 (661)
66 3fmo_B ATP-dependent RNA helic 99.9 3.1E-23 1.1E-27 191.9 14.9 171 6-177 115-297 (300)
67 1qde_A EIF4A, translation init 99.9 4.4E-23 1.5E-27 183.2 14.6 174 5-180 36-219 (224)
68 2hjv_A ATP-dependent RNA helic 99.9 9.8E-24 3.4E-28 177.4 9.8 118 206-351 28-146 (163)
69 1q0u_A Bstdead; DEAD protein, 99.9 1.7E-23 5.9E-28 185.1 11.1 172 5-178 26-212 (219)
70 1vec_A ATP-dependent RNA helic 99.9 4.2E-23 1.4E-27 180.8 13.3 166 5-172 25-202 (206)
71 2oxc_A Probable ATP-dependent 99.9 1.7E-23 5.9E-28 186.5 10.6 170 6-176 47-227 (230)
72 1fuk_A Eukaryotic initiation f 99.9 1.4E-23 4.9E-28 176.8 8.6 120 204-351 21-141 (165)
73 1t5i_A C_terminal domain of A 99.9 1.9E-23 6.4E-28 177.2 8.8 119 202-348 20-139 (172)
74 3fe2_A Probable ATP-dependent 99.9 2.5E-23 8.4E-28 187.0 10.1 171 6-178 52-238 (242)
75 3dkp_A Probable ATP-dependent 99.9 1.2E-22 4E-27 183.0 14.0 173 6-179 52-242 (245)
76 3ber_A Probable ATP-dependent 99.9 5.7E-23 2E-27 185.2 11.5 170 5-176 65-246 (249)
77 1t6n_A Probable ATP-dependent 99.9 1.5E-22 5.3E-27 179.1 13.6 168 6-175 37-218 (220)
78 3bor_A Human initiation factor 99.9 1E-22 3.6E-27 182.2 12.3 169 6-176 53-233 (237)
79 2pl3_A Probable ATP-dependent 99.9 1E-22 3.5E-27 182.3 11.2 172 5-178 47-233 (236)
80 2p6n_A ATP-dependent RNA helic 99.9 7.7E-23 2.6E-27 176.1 9.4 117 202-347 44-161 (191)
81 2gxq_A Heat resistant RNA depe 99.9 1.7E-22 5.9E-27 177.0 11.8 170 5-176 23-204 (207)
82 2jgn_A DBX, DDX3, ATP-dependen 99.9 7E-23 2.4E-27 175.6 8.8 112 212-351 45-157 (185)
83 3ly5_A ATP-dependent RNA helic 99.9 5.6E-23 1.9E-27 186.7 8.0 157 6-164 77-246 (262)
84 2yjt_D ATP-dependent RNA helic 99.8 1.5E-23 5.2E-28 177.5 0.0 120 204-351 21-141 (170)
85 1wrb_A DJVLGB; RNA helicase, D 99.9 1.7E-21 5.7E-26 176.3 11.6 171 6-178 46-240 (253)
86 2ipc_A Preprotein translocase 99.8 1.7E-19 5.7E-24 181.6 16.8 117 7-128 81-213 (997)
87 2vl7_A XPD; helicase, unknown 99.8 6.8E-20 2.3E-24 183.1 10.1 126 200-343 372-518 (540)
88 3b6e_A Interferon-induced heli 99.8 6.1E-20 2.1E-24 161.8 7.4 156 3-159 31-216 (216)
89 1rif_A DAR protein, DNA helica 99.7 7.4E-18 2.5E-22 154.7 9.1 150 4-162 112-264 (282)
90 2fz4_A DNA repair protein RAD2 99.7 1.2E-16 4.2E-21 142.3 12.5 139 4-163 92-231 (237)
91 3crv_A XPD/RAD3 related DNA he 99.7 1.7E-14 5.8E-19 144.5 26.8 308 4-337 2-520 (551)
92 1z5z_A Helicase of the SNF2/RA 99.6 1.6E-15 5.4E-20 137.4 5.3 113 212-351 111-228 (271)
93 4a15_A XPD helicase, ATP-depen 99.4 8E-12 2.7E-16 126.2 15.0 126 198-343 434-581 (620)
94 1w36_D RECD, exodeoxyribonucle 98.7 3.5E-08 1.2E-12 99.6 10.5 140 8-158 152-297 (608)
95 3e1s_A Exodeoxyribonuclease V, 98.4 1E-06 3.5E-11 88.0 9.4 126 4-157 188-313 (574)
96 3upu_A ATP-dependent DNA helic 98.2 1.9E-06 6.4E-11 84.1 8.2 64 6-69 26-94 (459)
97 3ec2_A DNA replication protein 98.2 4.6E-06 1.6E-10 70.3 8.6 27 19-45 37-63 (180)
98 2kjq_A DNAA-related protein; s 98.0 1.3E-05 4.4E-10 65.2 6.8 27 19-45 35-61 (149)
99 2b8t_A Thymidine kinase; deoxy 97.9 5.9E-05 2E-09 65.4 10.1 115 18-158 10-124 (223)
100 4g1u_C Hemin import ATP-bindin 97.8 1.6E-05 5.5E-10 71.3 5.4 150 17-169 34-215 (266)
101 2pcj_A ABC transporter, lipopr 97.8 4.6E-05 1.6E-09 66.5 8.1 59 100-159 141-199 (224)
102 1fnn_A CDC6P, cell division co 97.8 0.00019 6.6E-09 68.1 12.4 119 22-160 46-169 (389)
103 3te6_A Regulatory protein SIR3 97.7 0.00034 1.1E-08 64.1 12.8 123 19-161 44-174 (318)
104 2w0m_A SSO2452; RECA, SSPF, un 97.7 7.5E-05 2.6E-09 65.4 8.3 40 16-55 19-58 (235)
105 3tui_C Methionine import ATP-b 97.7 3.9E-05 1.3E-09 71.5 6.5 67 100-169 164-231 (366)
106 3n70_A Transport activator; si 97.7 0.00044 1.5E-08 55.7 11.3 37 8-44 12-48 (145)
107 3gfo_A Cobalt import ATP-bindi 97.7 2.4E-05 8.3E-10 70.4 4.1 61 100-161 144-205 (275)
108 3tif_A Uncharacterized ABC tra 97.7 6.9E-05 2.4E-09 65.9 6.9 60 100-160 146-206 (235)
109 1vpl_A ABC transporter, ATP-bi 97.7 5.4E-05 1.8E-09 67.4 6.0 67 100-169 147-213 (256)
110 1sgw_A Putative ABC transporte 97.6 4.9E-05 1.7E-09 65.7 5.4 140 17-160 32-193 (214)
111 3co5_A Putative two-component 97.6 0.00029 1E-08 56.6 9.4 34 8-41 15-48 (143)
112 3kl4_A SRP54, signal recogniti 97.6 0.00037 1.3E-08 66.5 11.4 125 20-161 97-224 (433)
113 2o0j_A Terminase, DNA packagin 97.6 0.0018 6.3E-08 60.8 15.9 70 4-73 162-232 (385)
114 1xx6_A Thymidine kinase; NESG, 97.6 0.00018 6.3E-09 60.8 8.2 41 18-59 6-46 (191)
115 2w58_A DNAI, primosome compone 97.6 0.00016 5.6E-09 61.8 7.9 25 21-45 55-79 (202)
116 2ff7_A Alpha-hemolysin translo 97.6 3.3E-05 1.1E-09 68.5 3.5 59 100-160 146-204 (247)
117 2orw_A Thymidine kinase; TMTK, 97.6 0.00012 4.1E-09 61.7 6.8 40 19-59 2-41 (184)
118 2olj_A Amino acid ABC transpor 97.6 5.6E-05 1.9E-09 67.5 4.9 67 100-169 160-226 (263)
119 2nq2_C Hypothetical ABC transp 97.6 0.00023 7.9E-09 63.2 8.7 136 17-169 28-196 (253)
120 2ixe_A Antigen peptide transpo 97.5 5.7E-05 1.9E-09 67.9 4.5 58 100-158 157-215 (271)
121 1ji0_A ABC transporter; ATP bi 97.5 5E-05 1.7E-09 67.0 3.9 67 100-169 140-206 (240)
122 2px0_A Flagellar biosynthesis 97.5 0.00076 2.6E-08 61.4 11.7 128 19-169 104-233 (296)
123 3nh6_A ATP-binding cassette SU 97.5 1.9E-05 6.5E-10 72.1 1.0 62 100-165 191-252 (306)
124 1njg_A DNA polymerase III subu 97.5 0.0011 3.6E-08 58.1 11.9 34 11-44 33-69 (250)
125 2yz2_A Putative ABC transporte 97.5 0.00083 2.8E-08 60.1 11.2 60 100-160 139-198 (266)
126 1cr0_A DNA primase/helicase; R 97.5 0.00073 2.5E-08 61.6 11.0 45 10-54 25-69 (296)
127 3cpe_A Terminase, DNA packagin 97.5 0.0027 9.2E-08 63.8 16.0 71 4-74 162-233 (592)
128 1g6h_A High-affinity branched- 97.4 5E-05 1.7E-09 67.8 2.9 61 100-161 154-214 (257)
129 3dm5_A SRP54, signal recogniti 97.4 0.00097 3.3E-08 63.7 11.9 125 20-161 100-225 (443)
130 2gk6_A Regulator of nonsense t 97.4 0.00018 6.2E-09 72.8 7.0 66 6-71 181-246 (624)
131 2v1u_A Cell division control p 97.4 0.0005 1.7E-08 65.0 9.4 26 19-44 43-68 (387)
132 2chg_A Replication factor C sm 97.4 0.0032 1.1E-07 54.1 13.9 33 11-43 27-61 (226)
133 2qi9_C Vitamin B12 import ATP- 97.4 6.2E-05 2.1E-09 66.7 2.8 31 17-47 23-53 (249)
134 3b5x_A Lipid A export ATP-bind 97.4 0.00021 7.1E-09 71.8 6.8 141 17-159 366-538 (582)
135 4b3f_X DNA-binding protein smu 97.4 0.00022 7.7E-09 72.5 7.1 65 6-71 190-255 (646)
136 3fvq_A Fe(3+) IONS import ATP- 97.4 0.00075 2.6E-08 62.8 10.0 67 100-169 139-206 (359)
137 2cvh_A DNA repair and recombin 97.4 0.00055 1.9E-08 59.2 8.5 27 16-42 16-42 (220)
138 3rlf_A Maltose/maltodextrin im 97.3 0.00049 1.7E-08 64.5 8.2 66 100-168 134-200 (381)
139 2ehv_A Hypothetical protein PH 97.3 0.00025 8.7E-09 62.7 6.1 26 16-41 26-51 (251)
140 1l8q_A Chromosomal replication 97.3 0.0014 5E-08 60.4 11.3 35 20-55 37-71 (324)
141 1b0u_A Histidine permease; ABC 97.3 0.00017 5.7E-09 64.5 4.7 67 100-169 154-220 (262)
142 3bos_A Putative DNA replicatio 97.3 0.0011 3.7E-08 58.1 10.0 26 19-44 51-76 (242)
143 1mv5_A LMRA, multidrug resista 97.3 0.00032 1.1E-08 62.0 6.4 34 17-50 25-58 (243)
144 2pze_A Cystic fibrosis transme 97.3 0.00018 6.3E-09 62.9 4.7 138 17-158 31-188 (229)
145 1z47_A CYSA, putative ABC-tran 97.3 0.00088 3E-08 62.3 9.6 67 100-169 146-213 (355)
146 2cbz_A Multidrug resistance-as 97.3 0.0002 7E-09 62.9 4.9 141 17-161 28-190 (237)
147 3vkw_A Replicase large subunit 97.3 0.00056 1.9E-08 65.1 8.1 105 20-157 161-267 (446)
148 2it1_A 362AA long hypothetical 97.3 0.0011 3.7E-08 61.9 9.6 66 100-168 134-200 (362)
149 1ojl_A Transcriptional regulat 97.3 0.0013 4.4E-08 60.1 10.0 33 13-45 18-50 (304)
150 2wjy_A Regulator of nonsense t 97.3 0.00037 1.3E-08 72.2 7.0 66 6-71 357-422 (800)
151 3qf4_A ABC transporter, ATP-bi 97.3 0.0012 4E-08 66.3 10.5 138 17-159 366-537 (587)
152 1vma_A Cell division protein F 97.3 0.0023 8E-08 58.3 11.6 126 19-161 103-235 (306)
153 2bjv_A PSP operon transcriptio 97.2 0.0031 1E-07 56.3 12.2 31 15-45 24-54 (265)
154 2ihy_A ABC transporter, ATP-bi 97.2 0.00064 2.2E-08 61.3 7.5 59 100-159 162-222 (279)
155 2xzl_A ATP-dependent helicase 97.2 0.00028 9.5E-09 73.2 5.7 66 6-71 361-426 (802)
156 2qgz_A Helicase loader, putati 97.2 0.00029 1E-08 64.6 5.2 26 20-45 152-177 (308)
157 1a5t_A Delta prime, HOLB; zinc 97.2 0.0015 5.1E-08 60.7 9.9 39 6-44 3-48 (334)
158 2yyz_A Sugar ABC transporter, 97.2 0.0011 3.7E-08 61.8 8.9 66 100-168 134-200 (359)
159 2qby_A CDC6 homolog 1, cell di 97.2 0.00047 1.6E-08 65.2 6.6 25 20-44 45-69 (386)
160 2r6a_A DNAB helicase, replicat 97.2 0.00057 2E-08 66.3 7.3 43 13-55 196-238 (454)
161 4gp7_A Metallophosphoesterase; 97.2 0.00014 4.7E-09 60.6 2.4 23 17-39 6-28 (171)
162 3d31_A Sulfate/molybdate ABC t 97.2 0.00061 2.1E-08 63.3 7.0 66 100-168 128-194 (348)
163 4a74_A DNA repair and recombin 97.2 0.00077 2.6E-08 58.7 7.3 30 16-45 21-50 (231)
164 3qf4_B Uncharacterized ABC tra 97.2 0.00016 5.6E-09 72.7 3.2 140 17-161 378-551 (598)
165 2pjz_A Hypothetical protein ST 97.2 0.00039 1.3E-08 62.1 5.3 56 100-159 129-184 (263)
166 2zpa_A Uncharacterized protein 97.2 0.0012 4.2E-08 66.0 9.3 111 8-162 178-290 (671)
167 2d2e_A SUFC protein; ABC-ATPas 97.2 8.4E-05 2.9E-09 66.0 0.9 60 100-160 144-203 (250)
168 3e70_C DPA, signal recognition 97.1 0.0017 5.9E-08 59.8 9.7 126 19-162 128-255 (328)
169 1sxj_E Activator 1 40 kDa subu 97.1 0.0035 1.2E-07 58.5 11.6 43 115-160 132-174 (354)
170 2j9r_A Thymidine kinase; TK1, 97.1 0.00057 2E-08 58.3 5.5 41 19-60 27-67 (214)
171 2qby_B CDC6 homolog 3, cell di 97.1 0.0007 2.4E-08 64.1 6.8 25 20-44 45-69 (384)
172 2ghi_A Transport protein; mult 97.1 0.00017 5.8E-09 64.4 2.3 58 100-159 156-213 (260)
173 3b60_A Lipid A export ATP-bind 97.1 0.00017 6E-09 72.3 2.6 59 100-160 481-539 (582)
174 2onk_A Molybdate/tungstate ABC 97.1 0.0013 4.4E-08 57.9 7.8 67 100-169 127-194 (240)
175 1v43_A Sugar-binding transport 97.1 0.001 3.5E-08 62.3 7.5 33 17-49 34-66 (372)
176 1w4r_A Thymidine kinase; type 97.1 0.00063 2.1E-08 57.1 5.4 39 19-58 19-57 (195)
177 1g29_1 MALK, maltose transport 97.1 0.0019 6.5E-08 60.6 9.3 66 100-168 140-206 (372)
178 2zu0_C Probable ATP-dependent 97.1 0.0014 4.6E-08 58.7 7.9 59 100-159 165-223 (267)
179 1n0w_A DNA repair protein RAD5 97.1 0.0014 4.9E-08 57.5 8.0 28 16-43 20-47 (243)
180 1nlf_A Regulatory protein REPA 97.0 0.0015 5E-08 59.0 8.1 29 16-44 26-54 (279)
181 2z4s_A Chromosomal replication 97.0 0.0047 1.6E-07 59.6 12.0 25 20-44 130-154 (440)
182 3u61_B DNA polymerase accessor 97.0 0.0094 3.2E-07 54.8 13.3 32 13-44 38-72 (324)
183 1jr3_A DNA polymerase III subu 97.0 0.0045 1.6E-07 58.1 11.3 34 12-45 27-63 (373)
184 1ls1_A Signal recognition part 97.0 0.0058 2E-07 55.4 11.4 126 19-161 97-223 (295)
185 2orv_A Thymidine kinase; TP4A 97.0 0.0019 6.4E-08 55.7 7.6 41 19-60 18-58 (234)
186 2q6t_A DNAB replication FORK h 97.0 0.0015 5.2E-08 63.1 7.9 62 13-75 193-255 (444)
187 2bbs_A Cystic fibrosis transme 97.0 0.00076 2.6E-08 61.1 5.4 60 99-159 159-218 (290)
188 4a82_A Cystic fibrosis transme 96.9 0.00017 5.9E-09 72.3 1.0 57 100-158 478-534 (578)
189 3j16_B RLI1P; ribosome recycli 96.9 0.0018 6.2E-08 64.8 8.2 66 100-168 222-287 (608)
190 4f4c_A Multidrug resistance pr 96.9 0.0003 1E-08 77.2 2.8 139 17-160 1102-1276(1321)
191 1sxj_D Activator 1 41 kDa subu 96.9 0.0015 5.2E-08 60.9 7.3 35 10-44 46-82 (353)
192 2yl4_A ATP-binding cassette SU 96.9 0.00023 7.8E-09 71.7 1.6 58 100-159 484-541 (595)
193 3ozx_A RNAse L inhibitor; ATP 96.9 0.0012 4E-08 65.3 6.6 146 17-169 291-453 (538)
194 1oxx_K GLCV, glucose, ABC tran 96.9 0.0017 5.8E-08 60.5 7.3 67 100-169 141-208 (353)
195 1yqt_A RNAse L inhibitor; ATP- 96.9 0.003 1E-07 62.5 9.2 66 100-168 159-224 (538)
196 2yhs_A FTSY, cell division pro 96.9 0.0086 3E-07 57.8 11.9 39 19-57 292-330 (503)
197 1iqp_A RFCS; clamp loader, ext 96.9 0.0047 1.6E-07 56.8 9.9 32 12-43 36-69 (327)
198 3eie_A Vacuolar protein sortin 96.9 0.0032 1.1E-07 58.1 8.7 25 20-44 51-75 (322)
199 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.0028 9.4E-08 58.5 7.9 25 20-44 45-69 (322)
200 1yqt_A RNAse L inhibitor; ATP- 96.8 0.0021 7E-08 63.7 7.3 144 17-169 309-469 (538)
201 4aby_A DNA repair protein RECN 96.8 0.0048 1.6E-07 59.0 9.8 58 100-159 296-355 (415)
202 1ye8_A Protein THEP1, hypothet 96.8 0.0087 3E-07 49.8 10.1 23 22-44 2-24 (178)
203 1sxj_A Activator 1 95 kDa subu 96.8 0.0064 2.2E-07 60.0 10.7 25 20-44 77-101 (516)
204 4f4c_A Multidrug resistance pr 96.8 0.0013 4.4E-08 72.2 6.1 131 17-158 441-611 (1321)
205 1w5s_A Origin recognition comp 96.8 0.0021 7.2E-08 61.3 6.9 26 19-44 49-76 (412)
206 4a1f_A DNAB helicase, replicat 96.7 0.0017 5.8E-08 59.9 5.9 56 12-69 38-93 (338)
207 3bk7_A ABC transporter ATP-bin 96.7 0.0057 2E-07 61.3 10.1 144 17-169 379-539 (607)
208 1sxj_C Activator 1 40 kDa subu 96.7 0.0082 2.8E-07 55.7 10.7 32 13-44 37-70 (340)
209 3syl_A Protein CBBX; photosynt 96.7 0.0065 2.2E-07 55.4 9.8 25 20-44 67-91 (309)
210 1pzn_A RAD51, DNA repair and r 96.7 0.0019 6.3E-08 60.3 6.1 28 17-44 128-155 (349)
211 3h4m_A Proteasome-activating n 96.7 0.0022 7.6E-08 57.9 6.5 27 18-44 49-75 (285)
212 3k1j_A LON protease, ATP-depen 96.7 0.026 8.9E-07 56.8 14.8 38 11-48 51-88 (604)
213 3pfi_A Holliday junction ATP-d 96.7 0.0088 3E-07 55.4 10.6 24 21-44 56-79 (338)
214 1hqc_A RUVB; extended AAA-ATPa 96.7 0.012 4.1E-07 54.0 11.4 25 20-44 38-62 (324)
215 3e2i_A Thymidine kinase; Zn-bi 96.7 0.0016 5.5E-08 55.5 4.9 42 18-60 26-67 (219)
216 3j16_B RLI1P; ribosome recycli 96.7 0.015 5.1E-07 58.2 12.6 144 19-168 377-534 (608)
217 3vfd_A Spastin; ATPase, microt 96.7 0.0055 1.9E-07 58.1 9.0 25 20-44 148-172 (389)
218 4fcw_A Chaperone protein CLPB; 96.7 0.0075 2.6E-07 55.0 9.6 26 21-46 48-73 (311)
219 1d2n_A N-ethylmaleimide-sensit 96.6 0.0083 2.9E-07 53.7 9.7 25 20-44 64-88 (272)
220 3b85_A Phosphate starvation-in 96.6 0.00096 3.3E-08 57.3 3.2 42 7-49 9-50 (208)
221 2qp9_X Vacuolar protein sortin 96.6 0.0034 1.2E-07 58.7 7.0 25 20-44 84-108 (355)
222 3bk7_A ABC transporter ATP-bin 96.6 0.0047 1.6E-07 61.9 8.3 66 100-168 229-294 (607)
223 2eyu_A Twitching motility prot 96.6 0.00094 3.2E-08 59.5 3.0 41 17-57 22-63 (261)
224 2qen_A Walker-type ATPase; unk 96.6 0.0099 3.4E-07 55.1 10.2 34 11-44 22-55 (350)
225 3b9p_A CG5977-PA, isoform A; A 96.6 0.011 3.7E-07 53.7 10.2 26 19-44 53-78 (297)
226 3gd7_A Fusion complex of cysti 96.6 0.0011 3.7E-08 62.6 3.4 57 100-158 156-212 (390)
227 3lfu_A DNA helicase II; SF1 he 96.6 0.0021 7.3E-08 65.4 5.8 69 5-75 9-80 (647)
228 3ozx_A RNAse L inhibitor; ATP 96.6 0.0022 7.5E-08 63.3 5.6 59 100-160 139-197 (538)
229 1p9r_A General secretion pathw 96.5 0.0028 9.7E-08 60.4 5.9 40 18-57 165-204 (418)
230 2gza_A Type IV secretion syste 96.5 0.0028 9.4E-08 59.4 5.7 36 13-48 168-203 (361)
231 3pvs_A Replication-associated 96.5 0.0051 1.8E-07 59.3 7.6 32 13-44 41-74 (447)
232 2gno_A DNA polymerase III, gam 96.5 0.02 6.9E-07 52.1 11.1 50 105-157 70-119 (305)
233 2oap_1 GSPE-2, type II secreti 96.5 0.0031 1.1E-07 61.8 5.9 35 13-47 253-287 (511)
234 3lda_A DNA repair protein RAD5 96.4 0.0061 2.1E-07 57.7 7.5 26 17-42 175-200 (400)
235 1j8m_F SRP54, signal recogniti 96.4 0.019 6.6E-07 52.0 10.5 124 20-160 98-224 (297)
236 3jvv_A Twitching mobility prot 96.4 0.0025 8.6E-08 59.4 4.6 39 17-55 120-158 (356)
237 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0028 9.5E-08 58.6 4.8 37 13-49 164-200 (330)
238 1sxj_B Activator 1 37 kDa subu 96.4 0.013 4.3E-07 53.7 9.1 32 12-43 32-65 (323)
239 2zr9_A Protein RECA, recombina 96.3 0.023 7.8E-07 52.8 10.5 38 17-55 58-95 (349)
240 3uk6_A RUVB-like 2; hexameric 96.3 0.0062 2.1E-07 57.1 6.6 26 20-45 70-95 (368)
241 3g5u_A MCG1178, multidrug resi 96.2 0.0027 9.1E-08 69.6 4.4 34 17-50 413-446 (1284)
242 3hr8_A Protein RECA; alpha and 96.2 0.027 9.2E-07 52.3 10.2 40 17-57 58-97 (356)
243 3b9q_A Chloroplast SRP recepto 96.2 0.0071 2.4E-07 55.0 6.1 53 19-71 99-152 (302)
244 1znw_A Guanylate kinase, GMP k 96.1 0.004 1.4E-07 53.3 4.0 30 15-44 15-44 (207)
245 2chq_A Replication factor C sm 96.1 0.0048 1.6E-07 56.5 4.7 23 22-44 40-62 (319)
246 1zu4_A FTSY; GTPase, signal re 96.1 0.073 2.5E-06 48.7 12.4 39 19-57 104-142 (320)
247 1htw_A HI0065; nucleotide-bind 96.0 0.0042 1.4E-07 50.6 3.7 31 18-49 31-61 (158)
248 1kgd_A CASK, peripheral plasma 96.0 0.0048 1.6E-07 51.5 4.0 27 18-44 3-29 (180)
249 1tf7_A KAIC; homohexamer, hexa 96.0 0.0092 3.2E-07 59.0 6.6 134 16-160 277-417 (525)
250 2ewv_A Twitching motility prot 96.0 0.0031 1.1E-07 59.3 2.9 38 17-54 133-170 (372)
251 2zan_A Vacuolar protein sortin 96.0 0.006 2.1E-07 58.9 5.0 26 19-44 166-191 (444)
252 2fna_A Conserved hypothetical 96.0 0.038 1.3E-06 51.2 10.4 31 12-44 24-54 (357)
253 2og2_A Putative signal recogni 96.0 0.0094 3.2E-07 55.5 6.1 52 19-70 156-208 (359)
254 3tr0_A Guanylate kinase, GMP k 96.0 0.0048 1.6E-07 52.5 3.9 28 17-44 4-31 (205)
255 1uaa_A REP helicase, protein ( 95.9 0.0058 2E-07 62.5 5.0 69 5-75 2-73 (673)
256 2v9p_A Replication protein E1; 95.9 0.0072 2.4E-07 54.9 5.1 29 16-44 122-150 (305)
257 2ffh_A Protein (FFH); SRP54, s 95.9 0.051 1.8E-06 51.7 11.1 125 20-161 98-223 (425)
258 1rj9_A FTSY, signal recognitio 95.9 0.013 4.3E-07 53.4 6.6 40 19-58 101-140 (304)
259 1xp8_A RECA protein, recombina 95.9 0.058 2E-06 50.4 11.2 38 17-55 71-108 (366)
260 1s96_A Guanylate kinase, GMP k 95.9 0.0062 2.1E-07 52.6 4.1 30 16-45 12-41 (219)
261 3bgw_A DNAB-like replicative h 95.8 0.02 6.9E-07 55.1 8.0 55 13-69 190-244 (444)
262 1z6g_A Guanylate kinase; struc 95.8 0.0052 1.8E-07 53.1 3.5 29 16-44 19-47 (218)
263 1lvg_A Guanylate kinase, GMP k 95.8 0.005 1.7E-07 52.3 3.3 27 18-44 2-28 (198)
264 1pjr_A PCRA; DNA repair, DNA r 95.8 0.0092 3.1E-07 61.5 5.7 67 6-74 12-81 (724)
265 2iw3_A Elongation factor 3A; a 95.8 0.041 1.4E-06 57.7 10.5 63 100-168 549-611 (986)
266 3g5u_A MCG1178, multidrug resi 95.8 0.016 5.6E-07 63.4 7.9 60 100-161 1172-1231(1284)
267 3u4q_A ATP-dependent helicase/ 95.8 0.011 3.6E-07 64.7 6.4 68 4-73 9-81 (1232)
268 1zp6_A Hypothetical protein AT 95.7 0.0052 1.8E-07 51.6 2.8 28 16-43 5-32 (191)
269 3ux8_A Excinuclease ABC, A sub 95.6 0.015 5.1E-07 59.3 6.6 60 100-160 203-264 (670)
270 3tau_A Guanylate kinase, GMP k 95.6 0.0085 2.9E-07 51.3 3.9 27 18-44 6-32 (208)
271 3ney_A 55 kDa erythrocyte memb 95.5 0.011 3.6E-07 50.0 4.1 27 18-44 17-43 (197)
272 3nbx_X ATPase RAVA; AAA+ ATPas 95.5 0.06 2.1E-06 52.5 10.0 35 10-44 31-65 (500)
273 4b4t_J 26S protease regulatory 95.5 0.027 9.2E-07 53.0 7.2 26 19-44 181-206 (405)
274 1tf7_A KAIC; homohexamer, hexa 95.5 0.0091 3.1E-07 59.0 4.2 25 16-40 35-59 (525)
275 2j41_A Guanylate kinase; GMP, 95.5 0.0094 3.2E-07 50.7 3.8 28 17-44 3-30 (207)
276 2v3c_C SRP54, signal recogniti 95.4 0.018 6.1E-07 55.1 6.0 25 21-45 100-124 (432)
277 3hu3_A Transitional endoplasmi 95.4 0.051 1.7E-06 52.9 9.2 27 18-44 236-262 (489)
278 3a00_A Guanylate kinase, GMP k 95.4 0.0093 3.2E-07 50.0 3.4 26 20-45 1-26 (186)
279 2ce7_A Cell division protein F 95.4 0.017 5.9E-07 55.9 5.7 25 20-44 49-73 (476)
280 2xxa_A Signal recognition part 95.3 0.12 4E-06 49.5 11.2 123 21-160 101-225 (433)
281 3m6a_A ATP-dependent protease 95.3 0.025 8.7E-07 56.0 6.9 26 19-44 107-132 (543)
282 3pxi_A Negative regulator of g 95.3 0.039 1.3E-06 57.1 8.4 23 22-44 523-545 (758)
283 2dr3_A UPF0273 protein PH0284; 95.3 0.012 4.1E-07 51.5 3.9 37 17-54 20-56 (247)
284 3c8u_A Fructokinase; YP_612366 95.2 0.0057 1.9E-07 52.4 1.6 28 18-45 20-47 (208)
285 3thx_A DNA mismatch repair pro 95.2 0.037 1.3E-06 58.1 7.8 23 18-40 660-682 (934)
286 3cmu_A Protein RECA, recombina 95.1 0.053 1.8E-06 61.0 9.1 41 17-58 1424-1464(2050)
287 1q57_A DNA primase/helicase; d 95.0 0.079 2.7E-06 51.9 9.4 58 11-69 233-290 (503)
288 3vaa_A Shikimate kinase, SK; s 95.0 0.017 6E-07 48.9 4.1 28 17-44 22-49 (199)
289 3lnc_A Guanylate kinase, GMP k 95.0 0.0089 3E-07 52.0 2.3 29 16-44 23-52 (231)
290 3aez_A Pantothenate kinase; tr 95.0 0.012 4.2E-07 53.7 3.2 31 17-47 87-117 (312)
291 1g5t_A COB(I)alamin adenosyltr 95.0 0.033 1.1E-06 46.7 5.6 40 19-59 27-66 (196)
292 4b4t_H 26S protease regulatory 94.9 0.063 2.2E-06 51.3 7.8 27 18-44 241-267 (467)
293 1jbk_A CLPB protein; beta barr 94.8 0.034 1.2E-06 46.2 5.4 35 10-44 31-67 (195)
294 2qor_A Guanylate kinase; phosp 94.8 0.016 5.4E-07 49.4 3.2 29 16-44 8-36 (204)
295 4eun_A Thermoresistant glucoki 94.8 0.021 7.2E-07 48.4 3.9 27 18-44 27-53 (200)
296 1qvr_A CLPB protein; coiled co 94.6 0.07 2.4E-06 56.0 8.2 32 13-44 182-215 (854)
297 3asz_A Uridine kinase; cytidin 94.6 0.02 6.8E-07 48.9 3.3 27 18-44 4-30 (211)
298 2j37_W Signal recognition part 94.6 0.17 5.7E-06 49.3 10.1 123 22-161 103-226 (504)
299 3thx_B DNA mismatch repair pro 94.6 0.26 8.7E-06 51.7 12.0 45 115-160 750-796 (918)
300 1kag_A SKI, shikimate kinase I 94.5 0.026 8.9E-07 46.4 3.8 26 19-44 3-28 (173)
301 2zts_A Putative uncharacterize 94.5 0.013 4.4E-07 51.5 2.0 39 17-55 27-65 (251)
302 1sq5_A Pantothenate kinase; P- 94.5 0.057 1.9E-06 49.2 6.2 36 18-53 78-115 (308)
303 3exa_A TRNA delta(2)-isopenten 94.4 0.025 8.6E-07 51.2 3.6 25 20-44 3-27 (322)
304 3a8t_A Adenylate isopentenyltr 94.4 0.023 7.8E-07 52.1 3.4 25 20-44 40-64 (339)
305 4b4t_I 26S protease regulatory 94.4 0.06 2.1E-06 50.9 6.3 26 19-44 215-240 (437)
306 2p65_A Hypothetical protein PF 94.4 0.038 1.3E-06 45.7 4.5 33 12-44 33-67 (187)
307 2i3b_A HCR-ntpase, human cance 94.3 0.019 6.4E-07 48.3 2.5 26 20-45 1-26 (189)
308 1tq4_A IIGP1, interferon-induc 94.3 0.045 1.5E-06 51.9 5.3 28 22-49 71-98 (413)
309 3kta_A Chromosome segregation 94.3 0.042 1.4E-06 45.6 4.6 24 21-44 27-50 (182)
310 3tqc_A Pantothenate kinase; bi 94.3 0.077 2.6E-06 48.5 6.6 24 22-45 94-117 (321)
311 1ex7_A Guanylate kinase; subst 94.2 0.032 1.1E-06 46.6 3.6 24 21-44 2-25 (186)
312 3uie_A Adenylyl-sulfate kinase 94.2 0.026 9E-07 47.8 3.1 29 17-45 22-50 (200)
313 1knq_A Gluconate kinase; ALFA/ 94.2 0.029 1E-06 46.2 3.3 26 19-44 7-32 (175)
314 2bdt_A BH3686; alpha-beta prot 94.1 0.024 8.2E-07 47.4 2.8 23 20-42 2-24 (189)
315 1qhx_A CPT, protein (chloramph 94.1 0.042 1.4E-06 45.3 4.2 25 20-44 3-27 (178)
316 2jeo_A Uridine-cytidine kinase 94.1 0.028 9.5E-07 49.4 3.2 29 16-44 21-49 (245)
317 1gm5_A RECG; helicase, replica 94.0 0.042 1.4E-06 56.7 4.8 78 213-296 417-495 (780)
318 1rz3_A Hypothetical protein rb 94.0 0.038 1.3E-06 46.8 3.8 27 19-45 21-47 (201)
319 2obl_A ESCN; ATPase, hydrolase 94.0 0.052 1.8E-06 50.3 4.9 31 17-47 68-98 (347)
320 3cf2_A TER ATPase, transitiona 93.9 0.23 7.9E-06 51.2 10.0 25 20-44 238-262 (806)
321 2z43_A DNA repair and recombin 93.9 0.083 2.8E-06 48.5 6.2 40 17-56 104-148 (324)
322 3bh0_A DNAB-like replicative h 93.9 0.095 3.2E-06 47.9 6.5 56 12-69 60-115 (315)
323 3sop_A Neuronal-specific septi 93.9 0.032 1.1E-06 49.8 3.3 28 22-49 4-31 (270)
324 3trf_A Shikimate kinase, SK; a 93.9 0.045 1.5E-06 45.5 4.0 25 20-44 5-29 (185)
325 1ny5_A Transcriptional regulat 93.8 0.45 1.5E-05 44.7 11.2 100 18-145 158-257 (387)
326 2qmh_A HPR kinase/phosphorylas 93.8 0.034 1.2E-06 46.7 3.0 25 19-43 33-57 (205)
327 1qvr_A CLPB protein; coiled co 93.8 0.12 4.1E-06 54.2 7.8 24 21-44 589-612 (854)
328 2ze6_A Isopentenyl transferase 93.8 0.039 1.3E-06 48.7 3.6 23 22-44 3-25 (253)
329 2o8b_B DNA mismatch repair pro 93.8 0.16 5.6E-06 53.9 8.8 21 20-40 789-809 (1022)
330 4eaq_A DTMP kinase, thymidylat 93.7 0.094 3.2E-06 45.4 5.9 29 18-46 24-52 (229)
331 2qm8_A GTPase/ATPase; G protei 93.7 0.039 1.3E-06 51.0 3.6 38 17-54 52-89 (337)
332 3foz_A TRNA delta(2)-isopenten 93.7 0.04 1.4E-06 49.8 3.5 24 21-44 11-34 (316)
333 2yvu_A Probable adenylyl-sulfa 93.7 0.05 1.7E-06 45.3 3.9 28 19-46 12-39 (186)
334 1v5w_A DMC1, meiotic recombina 93.7 0.11 3.6E-06 48.2 6.5 40 17-56 119-163 (343)
335 4ag6_A VIRB4 ATPase, type IV s 93.7 0.053 1.8E-06 51.3 4.5 41 19-60 34-74 (392)
336 1nij_A Hypothetical protein YJ 93.6 0.046 1.6E-06 50.1 3.9 24 21-44 5-28 (318)
337 1f2t_A RAD50 ABC-ATPase; DNA d 93.6 0.045 1.5E-06 43.9 3.4 24 20-43 23-46 (149)
338 1kht_A Adenylate kinase; phosp 93.6 0.047 1.6E-06 45.6 3.6 26 19-44 2-27 (192)
339 2npi_A Protein CLP1; CLP1-PCF1 93.6 0.029 9.9E-07 54.1 2.5 35 15-49 133-167 (460)
340 2bbw_A Adenylate kinase 4, AK4 93.5 0.048 1.7E-06 47.8 3.7 26 19-44 26-51 (246)
341 3cmu_A Protein RECA, recombina 93.5 0.16 5.6E-06 57.2 8.5 93 16-127 1077-1169(2050)
342 2plr_A DTMP kinase, probable t 93.5 0.11 3.8E-06 44.0 5.9 28 19-46 3-30 (213)
343 2yv5_A YJEQ protein; hydrolase 93.5 0.088 3E-06 47.8 5.4 31 16-47 161-191 (302)
344 2qt1_A Nicotinamide riboside k 93.5 0.04 1.4E-06 46.8 3.0 30 15-44 16-45 (207)
345 1r6b_X CLPA protein; AAA+, N-t 93.5 0.14 4.9E-06 52.9 7.7 121 7-157 464-605 (758)
346 1xjc_A MOBB protein homolog; s 93.4 0.07 2.4E-06 43.7 4.2 25 21-45 5-29 (169)
347 3cm0_A Adenylate kinase; ATP-b 93.4 0.041 1.4E-06 45.8 2.9 26 19-44 3-28 (186)
348 3kb2_A SPBC2 prophage-derived 93.4 0.057 2E-06 44.1 3.8 23 22-44 3-25 (173)
349 1in4_A RUVB, holliday junction 93.4 0.052 1.8E-06 50.1 3.8 24 21-44 52-75 (334)
350 3hgt_A HDA1 complex subunit 3; 93.3 0.45 1.5E-05 43.1 9.7 109 211-351 123-241 (328)
351 3tlx_A Adenylate kinase 2; str 93.3 0.071 2.4E-06 46.7 4.4 27 18-44 27-53 (243)
352 2vp4_A Deoxynucleoside kinase; 93.3 0.05 1.7E-06 47.2 3.4 37 18-58 18-54 (230)
353 3iij_A Coilin-interacting nucl 93.3 0.052 1.8E-06 45.0 3.3 27 18-44 9-35 (180)
354 3umf_A Adenylate kinase; rossm 93.3 0.054 1.9E-06 46.5 3.5 29 16-44 25-53 (217)
355 3lw7_A Adenylate kinase relate 93.3 0.05 1.7E-06 44.5 3.2 20 21-40 2-21 (179)
356 1gvn_B Zeta; postsegregational 93.2 0.078 2.7E-06 47.7 4.7 25 20-44 33-57 (287)
357 4e22_A Cytidylate kinase; P-lo 93.2 0.07 2.4E-06 47.0 4.2 27 18-44 25-51 (252)
358 2c95_A Adenylate kinase 1; tra 93.1 0.081 2.8E-06 44.3 4.4 28 17-44 6-33 (196)
359 1zd8_A GTP:AMP phosphotransfer 93.1 0.073 2.5E-06 46.0 4.1 27 18-44 5-31 (227)
360 2dpy_A FLII, flagellum-specifi 93.0 0.083 2.9E-06 50.6 4.7 34 16-49 153-186 (438)
361 2bwj_A Adenylate kinase 5; pho 93.0 0.065 2.2E-06 45.0 3.6 30 15-44 7-36 (199)
362 1y63_A LMAJ004144AAA protein; 93.0 0.073 2.5E-06 44.3 3.9 26 18-43 8-33 (184)
363 2v54_A DTMP kinase, thymidylat 93.0 0.069 2.3E-06 45.1 3.7 26 19-44 3-28 (204)
364 1np6_A Molybdopterin-guanine d 92.9 0.089 3E-06 43.4 4.2 25 21-45 7-31 (174)
365 3d3q_A TRNA delta(2)-isopenten 92.9 0.065 2.2E-06 49.2 3.7 24 21-44 8-31 (340)
366 1tue_A Replication protein E1; 92.8 0.07 2.4E-06 45.0 3.4 25 19-43 57-81 (212)
367 1cke_A CK, MSSA, protein (cyti 92.8 0.07 2.4E-06 45.9 3.6 25 20-44 5-29 (227)
368 2rhm_A Putative kinase; P-loop 92.8 0.055 1.9E-06 45.2 2.8 26 19-44 4-29 (193)
369 2f1r_A Molybdopterin-guanine d 92.8 0.034 1.2E-06 45.8 1.4 26 21-46 3-28 (171)
370 2rcn_A Probable GTPase ENGC; Y 92.8 0.11 3.7E-06 48.2 4.9 29 17-45 212-240 (358)
371 2r44_A Uncharacterized protein 92.8 0.064 2.2E-06 49.3 3.5 35 10-44 36-70 (331)
372 3crm_A TRNA delta(2)-isopenten 92.7 0.074 2.5E-06 48.5 3.7 24 21-44 6-29 (323)
373 1ly1_A Polynucleotide kinase; 92.7 0.075 2.6E-06 43.8 3.5 22 21-42 3-24 (181)
374 1nn5_A Similar to deoxythymidy 92.7 0.18 6.1E-06 42.8 6.0 27 18-44 7-33 (215)
375 1lv7_A FTSH; alpha/beta domain 92.6 0.1 3.6E-06 45.9 4.5 25 20-44 45-69 (257)
376 2pez_A Bifunctional 3'-phospho 92.6 0.077 2.6E-06 43.8 3.4 26 19-44 4-29 (179)
377 1ofh_A ATP-dependent HSL prote 92.6 0.11 3.6E-06 47.1 4.7 25 20-44 50-74 (310)
378 3hws_A ATP-dependent CLP prote 92.6 0.12 4.1E-06 48.2 5.1 26 19-44 50-75 (363)
379 3euj_A Chromosome partition pr 92.5 0.081 2.8E-06 51.1 3.8 33 17-50 27-59 (483)
380 1e9r_A Conjugal transfer prote 92.5 0.066 2.3E-06 51.4 3.2 43 19-62 52-94 (437)
381 3cf0_A Transitional endoplasmi 92.5 0.078 2.7E-06 48.1 3.5 27 18-44 47-73 (301)
382 1u0l_A Probable GTPase ENGC; p 92.4 0.11 3.8E-06 47.1 4.5 30 17-46 166-195 (301)
383 3eph_A TRNA isopentenyltransfe 92.3 0.074 2.5E-06 49.9 3.2 24 21-44 3-26 (409)
384 3t61_A Gluconokinase; PSI-biol 92.3 0.077 2.6E-06 44.8 3.1 25 20-44 18-42 (202)
385 3cr8_A Sulfate adenylyltranfer 92.3 0.084 2.9E-06 52.1 3.8 36 17-52 366-401 (552)
386 3nwj_A ATSK2; P loop, shikimat 92.3 0.096 3.3E-06 46.0 3.7 25 20-44 48-72 (250)
387 1m7g_A Adenylylsulfate kinase; 92.2 0.11 3.9E-06 44.2 4.1 30 16-45 21-50 (211)
388 1tev_A UMP-CMP kinase; ploop, 92.2 0.088 3E-06 44.0 3.4 25 20-44 3-27 (196)
389 1svm_A Large T antigen; AAA+ f 92.2 0.11 3.7E-06 48.7 4.1 28 17-44 166-193 (377)
390 1lw7_A Transcriptional regulat 92.1 0.062 2.1E-06 50.3 2.5 31 16-46 164-196 (365)
391 3sr0_A Adenylate kinase; phosp 92.1 0.099 3.4E-06 44.5 3.5 23 22-44 2-24 (206)
392 1c9k_A COBU, adenosylcobinamid 92.1 0.11 3.8E-06 42.9 3.7 45 23-72 2-46 (180)
393 2d7d_A Uvrabc system protein B 92.1 0.26 9E-06 49.9 7.2 68 3-74 10-82 (661)
394 1ixz_A ATP-dependent metallopr 92.0 0.11 3.7E-06 45.7 3.9 24 21-44 50-73 (254)
395 1u94_A RECA protein, recombina 92.0 0.11 3.6E-06 48.4 3.9 38 17-55 60-97 (356)
396 2qag_B Septin-6, protein NEDD5 92.0 0.074 2.5E-06 50.5 2.8 31 13-43 33-65 (427)
397 1zuh_A Shikimate kinase; alpha 92.0 0.12 4.1E-06 42.1 3.9 24 21-44 8-31 (168)
398 1aky_A Adenylate kinase; ATP:A 91.9 0.12 4.1E-06 44.3 4.0 26 19-44 3-28 (220)
399 4edh_A DTMP kinase, thymidylat 91.9 0.25 8.5E-06 42.2 5.9 41 18-58 4-44 (213)
400 1odf_A YGR205W, hypothetical 3 91.9 0.091 3.1E-06 47.3 3.2 25 20-44 31-55 (290)
401 3qf7_A RAD50; ABC-ATPase, ATPa 91.9 0.092 3.1E-06 49.1 3.4 22 22-43 25-46 (365)
402 3dzd_A Transcriptional regulat 91.7 0.55 1.9E-05 43.8 8.5 28 17-44 149-176 (368)
403 2qz4_A Paraplegin; AAA+, SPG7, 91.7 0.11 3.8E-06 45.7 3.6 26 19-44 38-63 (262)
404 3dl0_A Adenylate kinase; phosp 91.7 0.13 4.3E-06 44.0 3.8 23 22-44 2-24 (216)
405 2ius_A DNA translocase FTSK; n 91.6 0.18 6.1E-06 49.1 5.1 25 18-42 165-189 (512)
406 4tmk_A Protein (thymidylate ki 91.6 0.28 9.6E-06 41.8 5.9 40 19-58 2-42 (213)
407 3fb4_A Adenylate kinase; psych 91.6 0.12 4E-06 44.2 3.5 23 22-44 2-24 (216)
408 1zak_A Adenylate kinase; ATP:A 91.6 0.11 3.7E-06 44.7 3.3 26 19-44 4-29 (222)
409 2jaq_A Deoxyguanosine kinase; 91.6 0.12 4.1E-06 43.5 3.5 24 22-45 2-25 (205)
410 1nks_A Adenylate kinase; therm 91.6 0.11 3.8E-06 43.3 3.3 24 22-45 3-26 (194)
411 3qks_A DNA double-strand break 91.6 0.12 3.9E-06 43.9 3.4 25 20-44 23-47 (203)
412 1via_A Shikimate kinase; struc 91.5 0.11 3.9E-06 42.6 3.3 23 22-44 6-28 (175)
413 2if2_A Dephospho-COA kinase; a 91.5 0.13 4.4E-06 43.5 3.6 21 22-42 3-23 (204)
414 2wwf_A Thymidilate kinase, put 91.5 0.18 6.1E-06 42.7 4.5 27 18-44 8-34 (212)
415 2x8a_A Nuclear valosin-contain 91.4 0.12 4.2E-06 46.1 3.5 24 21-44 45-68 (274)
416 2cdn_A Adenylate kinase; phosp 91.4 0.15 5.3E-06 42.9 4.0 25 20-44 20-44 (201)
417 2i1q_A DNA repair and recombin 91.3 0.3 1E-05 44.7 6.1 27 17-43 95-121 (322)
418 2z0h_A DTMP kinase, thymidylat 91.3 0.28 9.5E-06 40.9 5.5 23 22-44 2-24 (197)
419 2eyq_A TRCF, transcription-rep 91.2 0.24 8.1E-06 53.6 6.1 79 212-296 651-730 (1151)
420 1iy2_A ATP-dependent metallopr 91.1 0.15 5.2E-06 45.5 3.9 24 21-44 74-97 (278)
421 3io5_A Recombination and repai 91.0 0.11 3.8E-06 47.0 2.8 44 17-61 26-70 (333)
422 3d8b_A Fidgetin-like protein 1 91.0 0.21 7.1E-06 46.5 4.8 26 19-44 116-141 (357)
423 1jjv_A Dephospho-COA kinase; P 91.0 0.14 4.7E-06 43.3 3.3 21 22-42 4-24 (206)
424 3cf2_A TER ATPase, transitiona 91.0 0.34 1.2E-05 49.9 6.7 24 21-44 512-535 (806)
425 2vli_A Antibiotic resistance p 90.9 0.12 4.2E-06 42.6 2.9 26 19-44 4-29 (183)
426 3auy_A DNA double-strand break 90.9 0.13 4.5E-06 48.1 3.3 23 20-42 25-47 (371)
427 2www_A Methylmalonic aciduria 90.9 0.17 5.7E-06 47.0 4.0 31 20-50 74-104 (349)
428 1ukz_A Uridylate kinase; trans 90.8 0.17 5.9E-06 42.6 3.7 24 21-44 16-39 (203)
429 1e6c_A Shikimate kinase; phosp 90.7 0.16 5.3E-06 41.5 3.3 24 21-44 3-26 (173)
430 2iyv_A Shikimate kinase, SK; t 90.7 0.16 5.5E-06 42.0 3.4 24 21-44 3-26 (184)
431 3lv8_A DTMP kinase, thymidylat 90.6 0.39 1.3E-05 41.7 5.8 41 18-58 25-66 (236)
432 1gtv_A TMK, thymidylate kinase 90.6 0.058 2E-06 45.9 0.6 23 22-44 2-24 (214)
433 2p5t_B PEZT; postsegregational 90.6 0.1 3.6E-06 45.9 2.2 25 20-44 32-56 (253)
434 3be4_A Adenylate kinase; malar 90.6 0.2 6.9E-06 42.8 4.0 25 20-44 5-29 (217)
435 3t15_A Ribulose bisphosphate c 90.5 0.15 5.2E-06 46.0 3.3 24 21-44 37-60 (293)
436 1ak2_A Adenylate kinase isoenz 90.5 0.2 6.8E-06 43.4 4.0 26 19-44 15-40 (233)
437 2iw3_A Elongation factor 3A; a 90.5 0.073 2.5E-06 55.9 1.3 33 17-49 696-728 (986)
438 2p67_A LAO/AO transport system 90.5 0.18 6.3E-06 46.5 3.9 33 18-50 54-86 (341)
439 1qf9_A UMP/CMP kinase, protein 90.4 0.18 6.1E-06 41.9 3.5 24 21-44 7-30 (194)
440 3qkt_A DNA double-strand break 90.4 0.16 5.4E-06 46.9 3.4 23 20-42 23-45 (339)
441 3a4m_A L-seryl-tRNA(SEC) kinas 90.4 0.17 5.8E-06 44.7 3.4 25 19-43 3-27 (260)
442 1t9h_A YLOQ, probable GTPase E 90.3 0.045 1.5E-06 49.7 -0.4 29 16-44 169-197 (307)
443 1e4v_A Adenylate kinase; trans 90.2 0.17 5.9E-06 43.1 3.2 23 22-44 2-24 (214)
444 2pt5_A Shikimate kinase, SK; a 90.2 0.21 7.3E-06 40.5 3.7 23 22-44 2-24 (168)
445 1uf9_A TT1252 protein; P-loop, 90.1 0.19 6.5E-06 42.2 3.4 23 21-43 9-31 (203)
446 3oiy_A Reverse gyrase helicase 90.0 0.34 1.2E-05 45.9 5.5 79 211-296 62-144 (414)
447 1qhl_A Protein (cell division 90.0 0.054 1.8E-06 46.9 -0.2 27 23-49 30-56 (227)
448 2r62_A Cell division protease 89.9 0.14 4.6E-06 45.4 2.4 25 20-44 44-68 (268)
449 3cmw_A Protein RECA, recombina 89.9 0.27 9.1E-06 54.7 5.1 90 19-127 1081-1170(1706)
450 3v9p_A DTMP kinase, thymidylat 89.9 0.28 9.7E-06 42.3 4.3 30 16-45 21-50 (227)
451 1vht_A Dephospho-COA kinase; s 89.9 0.2 6.7E-06 42.8 3.3 23 20-42 4-26 (218)
452 1pui_A ENGB, probable GTP-bind 89.9 0.13 4.5E-06 43.4 2.2 25 17-41 23-47 (210)
453 2xb4_A Adenylate kinase; ATP-b 89.8 0.2 6.8E-06 43.1 3.3 23 22-44 2-24 (223)
454 1w1w_A Structural maintenance 89.7 0.22 7.7E-06 47.6 3.9 28 18-45 24-51 (430)
455 2pbr_A DTMP kinase, thymidylat 89.7 0.22 7.6E-06 41.4 3.5 23 22-44 2-24 (195)
456 3r20_A Cytidylate kinase; stru 89.7 0.26 8.8E-06 42.7 3.9 26 19-44 8-33 (233)
457 1oix_A RAS-related protein RAB 89.5 0.23 8E-06 41.3 3.5 23 22-44 31-53 (191)
458 3pxg_A Negative regulator of g 89.4 0.35 1.2E-05 46.8 5.0 32 13-44 192-225 (468)
459 2f9l_A RAB11B, member RAS onco 89.3 0.25 8.4E-06 41.4 3.5 23 22-44 7-29 (199)
460 2c9o_A RUVB-like 1; hexameric 89.3 0.26 9E-06 47.5 4.1 25 20-44 63-87 (456)
461 3tmk_A Thymidylate kinase; pho 89.3 0.46 1.6E-05 40.6 5.1 36 19-57 4-39 (216)
462 1um8_A ATP-dependent CLP prote 89.2 0.24 8.1E-06 46.4 3.6 25 20-44 72-96 (376)
463 2o5v_A DNA replication and rep 88.8 0.22 7.5E-06 46.3 2.9 23 19-42 26-48 (359)
464 1e69_A Chromosome segregation 88.7 0.21 7.3E-06 45.6 2.9 23 22-44 26-48 (322)
465 2vhj_A Ntpase P4, P4; non- hyd 88.7 0.21 7.1E-06 45.4 2.6 27 17-43 120-146 (331)
466 3ux8_A Excinuclease ABC, A sub 88.5 0.19 6.4E-06 51.2 2.5 23 17-39 345-367 (670)
467 1wb9_A DNA mismatch repair pro 88.4 0.29 1E-05 50.5 3.9 25 19-43 606-630 (800)
468 2dyk_A GTP-binding protein; GT 88.4 0.33 1.1E-05 38.6 3.5 22 22-43 3-24 (161)
469 4hlc_A DTMP kinase, thymidylat 88.3 0.83 2.9E-05 38.6 6.1 38 20-58 2-39 (205)
470 2grj_A Dephospho-COA kinase; T 88.3 0.33 1.1E-05 40.6 3.5 24 20-43 12-35 (192)
471 4b4t_M 26S protease regulatory 88.2 0.31 1.1E-05 46.4 3.6 26 19-44 214-239 (434)
472 1q3t_A Cytidylate kinase; nucl 88.0 0.38 1.3E-05 41.7 3.8 27 18-44 14-40 (236)
473 2ce2_X GTPase HRAS; signaling 88.0 0.35 1.2E-05 38.6 3.4 22 22-43 5-26 (166)
474 4b4t_K 26S protease regulatory 88.0 0.33 1.1E-05 46.2 3.6 26 19-44 205-230 (428)
475 3fe2_A Probable ATP-dependent 87.9 0.72 2.4E-05 40.0 5.6 75 212-296 101-181 (242)
476 2gj8_A MNME, tRNA modification 87.9 0.31 1.1E-05 39.7 3.1 25 19-43 3-27 (172)
477 1z2a_A RAS-related protein RAB 87.9 0.35 1.2E-05 38.8 3.4 22 22-43 7-28 (168)
478 3hjn_A DTMP kinase, thymidylat 87.8 0.7 2.4E-05 38.8 5.3 39 23-61 3-41 (197)
479 1ewq_A DNA mismatch repair pro 87.8 0.33 1.1E-05 49.9 3.7 25 20-44 576-600 (765)
480 2iut_A DNA translocase FTSK; n 87.8 0.49 1.7E-05 46.5 4.8 39 20-58 214-255 (574)
481 3bor_A Human initiation factor 87.8 1 3.5E-05 38.9 6.5 76 212-296 97-178 (237)
482 1u0j_A DNA replication protein 87.7 0.6 2E-05 41.2 4.9 22 22-43 106-127 (267)
483 2ged_A SR-beta, signal recogni 87.7 0.38 1.3E-05 39.9 3.5 22 22-43 50-71 (193)
484 1uj2_A Uridine-cytidine kinase 87.6 0.38 1.3E-05 42.2 3.7 23 22-44 24-46 (252)
485 4b4t_L 26S protease subunit RP 87.6 0.36 1.2E-05 46.0 3.6 26 19-44 214-239 (437)
486 2wji_A Ferrous iron transport 87.6 0.37 1.3E-05 38.8 3.4 22 22-43 5-26 (165)
487 1vec_A ATP-dependent RNA helic 87.4 4 0.00014 33.9 10.0 76 212-296 70-151 (206)
488 1z0j_A RAB-22, RAS-related pro 87.4 0.41 1.4E-05 38.5 3.5 23 22-44 8-30 (170)
489 1ypw_A Transitional endoplasmi 87.4 0.4 1.4E-05 49.8 4.2 27 18-44 236-262 (806)
490 1g41_A Heat shock protein HSLU 87.3 0.66 2.2E-05 44.3 5.3 25 20-44 50-74 (444)
491 2ga8_A Hypothetical 39.9 kDa p 87.3 0.64 2.2E-05 42.8 5.0 36 8-43 6-47 (359)
492 3lxx_A GTPase IMAP family memb 87.3 0.47 1.6E-05 41.1 4.0 23 22-44 31-53 (239)
493 1ek0_A Protein (GTP-binding pr 87.2 0.42 1.4E-05 38.4 3.5 23 22-44 5-27 (170)
494 3ake_A Cytidylate kinase; CMP 87.2 0.39 1.3E-05 40.4 3.4 23 22-44 4-26 (208)
495 1yrb_A ATP(GTP)binding protein 87.1 0.49 1.7E-05 41.5 4.1 26 20-45 14-39 (262)
496 1ky3_A GTP-binding protein YPT 87.1 0.43 1.5E-05 38.8 3.5 22 22-43 10-31 (182)
497 1g16_A RAS-related protein SEC 87.1 0.42 1.5E-05 38.4 3.4 22 22-43 5-26 (170)
498 1kao_A RAP2A; GTP-binding prot 87.0 0.44 1.5E-05 38.0 3.5 22 22-43 5-26 (167)
499 1ltq_A Polynucleotide kinase; 87.0 0.4 1.4E-05 43.2 3.5 23 21-43 3-25 (301)
500 1g8p_A Magnesium-chelatase 38 87.0 0.32 1.1E-05 44.8 2.9 26 19-44 44-69 (350)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.1e-71 Score=575.52 Aligned_cols=425 Identities=49% Similarity=0.829 Sum_probs=389.1
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCC--CcEEEecccchhhhHHHHHHHHHHhCCccCCe
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTK--SGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~--~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~ 80 (432)
.+|++.+++++...+..+++++++||||||||++++.++....... +.++++++|+++++.|+++++++.++..++..
T Consensus 92 ~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~ 171 (773)
T 2xau_A 92 ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEE 171 (773)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTT
T ss_pred cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhhe
Confidence 5899999999999999999999999999999998888876543332 56899999999999999999999999999999
Q ss_pred eeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 81 ~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
+|+....+.......+|+++|||++.+.+..+..+.++++||+||+|+|+++.+.+..+++.+....+. .|+|+||||+
T Consensus 172 vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~-~~iIl~SAT~ 250 (773)
T 2xau_A 172 VGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPD-LKIIIMSATL 250 (773)
T ss_dssp EEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTT-CEEEEEESCS
T ss_pred ecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCC-ceEEEEeccc
Confidence 998887777777889999999999999998888999999999999998899999988888888877654 8999999999
Q ss_pred ChHHHHhhccCCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhc
Q 014006 161 DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (432)
Q Consensus 161 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~ 240 (432)
+.+.+++|+++.+++.+.++.+|++..|......++....+..+..++....++++||||+++++++.+++.|.+....+
T Consensus 251 ~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l 330 (773)
T 2xau_A 251 DAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQL 330 (773)
T ss_dssp CCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhh
Confidence 98999999999999999999999999998888888888888888887777778999999999999999999998643222
Q ss_pred c-CCCCCCeEEEEecCCCCHHHHhccCCCCC-----CCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCcc
Q 014006 241 D-EGSCMDAVILPLHGSLPPEMQVRVFSPPP-----PNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYS 314 (432)
Q Consensus 241 ~-~~~~~~~~~~~~h~~l~~~~r~~~~~~f~-----~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~ 314 (432)
. .....++.+.++||+|++++|.++++.|+ +|.++|||||+++++|||+|+|++|||+|+++...||+..|+..
T Consensus 331 ~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~ 410 (773)
T 2xau_A 331 VREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVES 410 (773)
T ss_dssp HHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEE
T ss_pred cccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccc
Confidence 0 00125788999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred ceEeeecHhhHHHhhcccCCCCCCeEEEecCccchhhcCCCCCCCccccCCchHHHHHHhhCCCCCCccccccCCCCCCH
Q 014006 315 LDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKFDFLDPPSS 394 (432)
Q Consensus 315 ~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~~~i~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~p~~ 394 (432)
+...|+|.++|+||+|||||.++|.||+||++.++...+.++..|||.+.+|...+|+++.+++.+ +..|+|++||+.
T Consensus 411 L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~--~~~f~~~~~p~~ 488 (773)
T 2xau_A 411 LLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDD--LVHFDFMDPPAP 488 (773)
T ss_dssp EEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCC--GGGCCCSSCCCH
T ss_pred cccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCC--hhhccccCCCcH
Confidence 999999999999999999999999999999999995559999999999999999999999999988 889999999999
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHhhcCCCCC
Q 014006 395 ESLEDALKQLYLIDAIDENGSITSIGRTMAGTSFFA 430 (432)
Q Consensus 395 ~~l~~~~~~L~~~g~i~~~~~~t~lG~~~~~l~~~~ 430 (432)
+.+.+|++.|.++|+||++|++|++|+.|+++|++|
T Consensus 489 ~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p 524 (773)
T 2xau_A 489 ETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDP 524 (773)
T ss_dssp HHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCH
T ss_pred HHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCH
Confidence 999999999999999999999999999999999986
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.6e-54 Score=445.40 Aligned_cols=412 Identities=17% Similarity=0.152 Sum_probs=291.1
Q ss_pred chhhhHHHHHHH-HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHH--HhCCccCCee
Q 014006 5 PILQYEETIVET-VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ--ELGVRLGEEV 81 (432)
Q Consensus 5 p~~~~q~~i~~~-i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~--~~~~~~~~~~ 81 (432)
..+++|.++++. +.++++++++||||||||++++..+.......+.++++++|+++|+.|+++++.+ .++..++..+
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~ 109 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTS 109 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECC
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 568999999999 8899999999999999997665555433222367999999999999999999832 2355666666
Q ss_pred eeeeeecccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 82 g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
|+....+... ..++|+|+|||++.+.+..+. .+.++++|||||+|+ ..+..+ ...++.++...+ +.|+|+||||+
T Consensus 110 G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~-l~~~~~-~~~l~~i~~~~~-~~~ii~lSATl 185 (715)
T 2va8_A 110 GDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHY-LNDPER-GPVVESVTIRAK-RRNLLALSATI 185 (715)
T ss_dssp SCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGG-GGCTTT-HHHHHHHHHHHH-TSEEEEEESCC
T ss_pred CCCCCchhhc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhh-cCCccc-chHHHHHHHhcc-cCcEEEEcCCC
Confidence 6544433322 478999999999999888776 489999999999995 323222 233444444444 49999999999
Q ss_pred C-hHHHHhhccCCCeeecCCCCCceeEEeCCCC--------------Ccch--HHHHHHHHHHHHhcCCCCCEEEEeCCH
Q 014006 161 D-GEKVSKFFSNCPTLNVPGKLYPVEILHSKER--------------PTSY--LESALKTAIDIHVREPEGDVLIFMTGQ 223 (432)
Q Consensus 161 ~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------------~~~~--~~~~~~~~~~~~~~~~~~~~lvF~~t~ 223 (432)
+ .+.+++|++ .+.+....+++|+...+.... .... .......+.... ..++++||||+|+
T Consensus 186 ~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~ 262 (715)
T 2va8_A 186 SNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL--SKNGQVLVFRNSR 262 (715)
T ss_dssp TTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHH--TTTCCEEEECSSH
T ss_pred CCHHHHHHHhC-CCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHH--hcCCCEEEEECCH
Confidence 6 678999995 566777777777664321100 0000 122333333333 3568999999999
Q ss_pred HHHHHHHHHHHHHHhh--cc---------------CC---------CCCCeEEEEecCCCCHHHHhccCCCCCCCccEEE
Q 014006 224 DDIEKLVSKLEDKIRS--LD---------------EG---------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFI 277 (432)
Q Consensus 224 ~~~~~~~~~L~~~~~~--~~---------------~~---------~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~il 277 (432)
++++.++..|.+.... +. .. ......+.++||+|+.++|..+++.|++|.++||
T Consensus 263 ~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vl 342 (715)
T 2va8_A 263 KMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVI 342 (715)
T ss_dssp HHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEE
T ss_pred HHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEE
Confidence 9999999999874321 00 00 0001348899999999999999999999999999
Q ss_pred EeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC---CCeEEEecCccch-hhcC
Q 014006 278 VSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVY-HDEF 353 (432)
Q Consensus 278 vaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~---~G~~~~l~~~~~~-~~~~ 353 (432)
|||+++++|||+|++++||+. ...||+..+.. ..|.|.++|+||+|||||.+ +|.||+++++.+. ...+
T Consensus 343 vaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~ 415 (715)
T 2va8_A 343 VATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVF 415 (715)
T ss_dssp EECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHH
T ss_pred EEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHH
Confidence 999999999999999999984 23455443222 46889999999999999986 8999999987662 2211
Q ss_pred --CCCCCCccccCCchH------HHHHHhhCCCC-C-Cccccc---cCCC-CCCHHHHHHHHHHHHHccCCCCCC---CC
Q 014006 354 --LDVTVPEIQRSSLAG------SVLYLKSLDLS-D-INVLKF---DFLD-PPSSESLEDALKQLYLIDAIDENG---SI 416 (432)
Q Consensus 354 --~~~~~~~i~~~~l~~------~~l~l~~~~~~-~-~~~~~~---~~~~-~p~~~~l~~~~~~L~~~g~i~~~~---~~ 416 (432)
.....|++.++++.. .++.+...|.. + ..+..+ .|+. +|+...++++++.|.+.|+|+.++ .+
T Consensus 416 ~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~ 495 (715)
T 2va8_A 416 KKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFAL 495 (715)
T ss_dssp HHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEE
T ss_pred HHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEee
Confidence 123567777777654 56666666532 1 002211 4443 445567999999999999998764 89
Q ss_pred CHHHHHhhcCCCCC
Q 014006 417 TSIGRTMAGTSFFA 430 (432)
Q Consensus 417 t~lG~~~~~l~~~~ 430 (432)
|++|+.++++|++|
T Consensus 496 t~lG~~~~~~~~~~ 509 (715)
T 2va8_A 496 TNFGKRVADLYINP 509 (715)
T ss_dssp CHHHHHHHHHTCCH
T ss_pred ChHHHHHHHHcCCH
Confidence 99999999999986
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=4.2e-53 Score=438.01 Aligned_cols=409 Identities=17% Similarity=0.142 Sum_probs=298.4
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHH--HhCCccCCeee
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ--ELGVRLGEEVG 82 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~--~~~~~~~~~~g 82 (432)
..+++|.++++.+.++++++++||||||||++++..+.... ..+.++++++|+++|+.|+++++.+ .++..++..+|
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~-~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G 103 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREA-IKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTG 103 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECS
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHH-HhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46889999999999999999999999999966544443221 1356899999999999999999832 23455565666
Q ss_pred eeeeecccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCC--CHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSL--NTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 83 ~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~--~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
+....+.. ...++|+|+|||++.+.+..+. .+.++++||+||+|+..- ....+..++..+.... ++.|+|+||||
T Consensus 104 ~~~~~~~~-~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~-~~~~ii~lSAT 181 (702)
T 2p6r_A 104 DYESRDEH-LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN-KALRVIGLSAT 181 (702)
T ss_dssp SCBCCSSC-STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHC-TTCEEEEEECC
T ss_pred CCCcchhh-ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcC-cCceEEEECCC
Confidence 44433322 3478999999999999887766 489999999999995221 2223333344444333 35999999999
Q ss_pred cC-hHHHHhhccCCCeeecCCCCCceeEEeCCCCCcchHH---------HHHHHHHHHHhcCCCCCEEEEeCCHHHHHHH
Q 014006 160 LD-GEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLE---------SALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (432)
Q Consensus 160 ~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~ 229 (432)
++ .+.+++|++ .+.+....+++|+...+.......+.. .....+.... ..++++||||+|+++++.+
T Consensus 182 l~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~ 258 (702)
T 2p6r_A 182 APNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECV--AENGGVLVFESTRRGAEKT 258 (702)
T ss_dssp CTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHH--HTTCCEEEECSSHHHHHHH
T ss_pred cCCHHHHHHHhC-CCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHH--hcCCCEEEEcCCHHHHHHH
Confidence 97 677999995 667777888888776543221111000 0222223322 2568999999999999999
Q ss_pred HHHHHHHHhhccCCC--------------------CCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCccccccc
Q 014006 230 VSKLEDKIRSLDEGS--------------------CMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV 289 (432)
Q Consensus 230 ~~~L~~~~~~~~~~~--------------------~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi 289 (432)
+..|.+.....-... ..+..+.++||+|++++|..+++.|++|.++|||||+++++|||+
T Consensus 259 a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidi 338 (702)
T 2p6r_A 259 AVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNL 338 (702)
T ss_dssp HHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCC
T ss_pred HHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCC
Confidence 999987533210000 001347789999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC---CCeEEEecCccchhhcC--CCCCCCccccC
Q 014006 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHDEF--LDVTVPEIQRS 364 (432)
Q Consensus 290 ~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~---~G~~~~l~~~~~~~~~~--~~~~~~~i~~~ 364 (432)
|++++||+. ...|| +. ..|.|.++|+||+|||||.+ +|.||.++++.++...+ .....|++.++
T Consensus 339 p~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s 407 (702)
T 2p6r_A 339 PARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITS 407 (702)
T ss_dssp CBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCC
T ss_pred CceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcee
Confidence 999999985 34455 11 56889999999999999986 89999999988765411 12456788777
Q ss_pred CchH------HHHHHhhCCCC-C-Cccccc---cCC----CCCCHHHHHHHHHHHHHccCCCCC--CCCCHHHHHhhcCC
Q 014006 365 SLAG------SVLYLKSLDLS-D-INVLKF---DFL----DPPSSESLEDALKQLYLIDAIDEN--GSITSIGRTMAGTS 427 (432)
Q Consensus 365 ~l~~------~~l~l~~~~~~-~-~~~~~~---~~~----~~p~~~~l~~~~~~L~~~g~i~~~--~~~t~lG~~~~~l~ 427 (432)
++.. .++.+...|.. + ..+..+ .|+ ++|..+.++++++.|.+.|+|+.+ +++|++|++++++|
T Consensus 408 ~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~ 487 (702)
T 2p6r_A 408 KLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLY 487 (702)
T ss_dssp CCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTT
T ss_pred ecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHh
Confidence 7654 55566666532 2 001111 333 367889999999999999999877 78999999999999
Q ss_pred CCC
Q 014006 428 FFA 430 (432)
Q Consensus 428 ~~~ 430 (432)
++|
T Consensus 488 ~~~ 490 (702)
T 2p6r_A 488 IDP 490 (702)
T ss_dssp CCH
T ss_pred CCH
Confidence 986
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.2e-51 Score=428.15 Aligned_cols=410 Identities=15% Similarity=0.123 Sum_probs=283.2
Q ss_pred chhhhHHHHHHH-HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHH--HhCCccCCee
Q 014006 5 PILQYEETIVET-VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ--ELGVRLGEEV 81 (432)
Q Consensus 5 p~~~~q~~i~~~-i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~--~~~~~~~~~~ 81 (432)
..+++|.++++. +.++++++++||||||||+++...+.......+.++++++|+++|+.|+++++.+ .++..++..+
T Consensus 23 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~ 102 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMAT 102 (720)
T ss_dssp BCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEEC
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEec
Confidence 578999999998 8999999999999999996554333322112357999999999999999999853 2345555555
Q ss_pred eeeeeecccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 82 g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
| ...........++|+|+|||++...+.... .+.++++|||||+|+ ..+.+... .+..++...+.+.|+|+||||+
T Consensus 103 G-~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~-l~~~~r~~-~~~~ll~~l~~~~~ii~lSATl 179 (720)
T 2zj8_A 103 G-DYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHL-IGSRDRGA-TLEVILAHMLGKAQIIGLSATI 179 (720)
T ss_dssp S-CSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGG-GGCTTTHH-HHHHHHHHHBTTBEEEEEECCC
T ss_pred C-CCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcc-cCCCcccH-HHHHHHHHhhcCCeEEEEcCCc
Confidence 5 222222233578999999999999887765 588999999999993 33322222 2333333332359999999999
Q ss_pred C-hHHHHhhccCCCeeecCCCCCceeEEeCCCCCcch-------HHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHH
Q 014006 161 D-GEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSY-------LESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (432)
Q Consensus 161 ~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~ 232 (432)
+ .+.+++|++ .+.+....++.|+...+.......+ .......+.... ..++++||||+|+++++.++..
T Consensus 180 ~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~ 256 (720)
T 2zj8_A 180 GNPEELAEWLN-AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAI--RKKKGALIFVNMRRKAERVALE 256 (720)
T ss_dssp SCHHHHHHHTT-EEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHH--HTTCCEEEECSCHHHHHHHHHH
T ss_pred CCHHHHHHHhC-CcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHH--hCCCCEEEEecCHHHHHHHHHH
Confidence 4 577999984 4556666677766543211110000 011122222222 2468999999999999999999
Q ss_pred HHHHHhhccC------------C-----------CCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCccccccc
Q 014006 233 LEDKIRSLDE------------G-----------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTV 289 (432)
Q Consensus 233 L~~~~~~~~~------------~-----------~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi 289 (432)
|.+....... . .....++.++||+|+.++|..+++.|++|.++|||||+++++|||+
T Consensus 257 L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdi 336 (720)
T 2zj8_A 257 LSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINT 336 (720)
T ss_dssp HHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCC
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCC
Confidence 9875322000 0 0001248899999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC---CCeEEEecCccchhh---cCCCCCCCcccc
Q 014006 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHD---EFLDVTVPEIQR 363 (432)
Q Consensus 290 ~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~---~G~~~~l~~~~~~~~---~~~~~~~~~i~~ 363 (432)
|++++||+.. ..|| .. ...|.|..+|+||+|||||.+ +|.||.++++.+... .+.....+++..
T Consensus 337 p~~~~VI~~~----~~yd-~~-----g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s 406 (720)
T 2zj8_A 337 PAFRVIIRDI----WRYS-DF-----GMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFS 406 (720)
T ss_dssp CBSEEEECCS----EECC-SS-----SCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCC
T ss_pred CceEEEEcCC----eeec-CC-----CCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEe
Confidence 9999999833 2333 11 125789999999999999985 799999998876432 133333344433
Q ss_pred C-----CchHHHHHHhhCCCCCCc--c---ccccCC------CCCCHHHHHHHHHHHHHccCCC-CCC---CCCHHHHHh
Q 014006 364 S-----SLAGSVLYLKSLDLSDIN--V---LKFDFL------DPPSSESLEDALKQLYLIDAID-ENG---SITSIGRTM 423 (432)
Q Consensus 364 ~-----~l~~~~l~l~~~~~~~~~--~---~~~~~~------~~p~~~~l~~~~~~L~~~g~i~-~~~---~~t~lG~~~ 423 (432)
. .+...++.....+..... + ..+.|+ +++..+.+.++++.|.+.|+|+ .++ .+|++|+.+
T Consensus 407 ~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~ 486 (720)
T 2zj8_A 407 QLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRT 486 (720)
T ss_dssp CTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHH
T ss_pred ecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHH
Confidence 2 244455555555432100 1 111232 2233467999999999999998 655 799999999
Q ss_pred hcCCCCC
Q 014006 424 AGTSFFA 430 (432)
Q Consensus 424 ~~l~~~~ 430 (432)
+++|++|
T Consensus 487 ~~~~~~~ 493 (720)
T 2zj8_A 487 AKLYIDP 493 (720)
T ss_dssp HHHTCCH
T ss_pred HHHcCCH
Confidence 9999986
No 5
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=9.2e-46 Score=361.92 Aligned_cols=307 Identities=17% Similarity=0.210 Sum_probs=228.8
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhc-C-----CCCCcEEEecccchhhhHHHHHHHHHHhC---C
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH-G-----YTKSGIIGVTQPRRVAAVSVARRVAQELG---V 75 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~-~-----~~~~~~vl~~~P~~~l~~q~~~~~~~~~~---~ 75 (432)
.+++|.++++.+.+|++++++|||||||| +++.+++... . ...+.++++++|+++|+.|+++.+.+... .
T Consensus 79 pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 158 (434)
T 2db3_A 79 PTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYL 158 (434)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSC
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCc
Confidence 46889999999999999999999999999 3433343322 1 12356899999999999999998876543 3
Q ss_pred ccCCeeeeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhh--cCC
Q 014006 76 RLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR--ASK 150 (432)
Q Consensus 76 ~~~~~~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~--~~~ 150 (432)
.++..+|...... ......++|+|+|||+|.+++.... .+.+++++|+|||| ++.+.++... +..+.... +.+
T Consensus 159 ~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah-~~~~~gf~~~-~~~i~~~~~~~~~ 236 (434)
T 2db3_A 159 KIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD-RMLDMGFSED-MRRIMTHVTMRPE 236 (434)
T ss_dssp CCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHH-HHTSTTTHHH-HHHHHHCTTSCSS
T ss_pred EEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHh-hhhccCcHHH-HHHHHHhcCCCCC
Confidence 3333344221111 1123568999999999999886554 68999999999999 7777776555 45554432 345
Q ss_pred cEEEEEecccChHH---HHhhccCCCeeecCC---CCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 014006 151 LKILITSATLDGEK---VSKFFSNCPTLNVPG---KLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQD 224 (432)
Q Consensus 151 ~~ii~~SAT~~~~~---~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~ 224 (432)
.|++++|||++.+. ...++.+...+.+.. ....+...+......... ..+..+..... +++||||+|++
T Consensus 237 ~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~----~~l~~~l~~~~-~~~lVF~~t~~ 311 (434)
T 2db3_A 237 HQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKR----SKLIEILSEQA-DGTIVFVETKR 311 (434)
T ss_dssp CEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHH----HHHHHHHHHCC-TTEEEECSSHH
T ss_pred ceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHH----HHHHHHHHhCC-CCEEEEEeCcH
Confidence 89999999998753 445665544444332 122333333222222222 22333333333 35999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccce
Q 014006 225 DIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQR 304 (432)
Q Consensus 225 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~ 304 (432)
.|+.+++.|.+ .++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||++|+|.
T Consensus 312 ~a~~l~~~L~~----------~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~-- 379 (434)
T 2db3_A 312 GADFLASFLSE----------KEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPS-- 379 (434)
T ss_dssp HHHHHHHHHHH----------TTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCS--
T ss_pred HHHHHHHHHHh----------CCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCC--
Confidence 99999999987 377899999999999999999999999999999999999999999999999998765
Q ss_pred eecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCcc
Q 014006 305 QYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (432)
Q Consensus 305 ~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~ 347 (432)
+..+|+||+||+||. +.|.++.+++++
T Consensus 380 ----------------~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 380 ----------------KIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp ----------------SHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred ----------------CHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 778999999999999 789999999854
No 6
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.2e-45 Score=357.83 Aligned_cols=318 Identities=17% Similarity=0.173 Sum_probs=234.0
Q ss_pred chhhhHHHHHHHHhcC--CEEEEEcCCCCCHHH-HHHHHHhhcC-CCCCcEEEecccchhhhHHHHHHHHHHhCCccCCe
Q 014006 5 PILQYEETIVETVEQN--PVVVVIGETGSGKST-QLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~--~~~ii~apTGsGKT~-~~~~~~~~~~-~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~ 80 (432)
..+++|.++++.+.++ ++++++||||||||. ++.+++.... ...+.++++++|+++|+.|+++.+.+......+..
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 126 (412)
T 3fht_A 47 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELK 126 (412)
T ss_dssp SCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCC
T ss_pred CCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccce
Confidence 3578899999999987 899999999999993 3334443332 23455899999999999999998877654433333
Q ss_pred eeeeeee---cccCCCCceEEEcCHHHHHHHHhcCC--CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEE
Q 014006 81 VGYAIRF---EDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (432)
Q Consensus 81 ~g~~~~~---~~~~~~~~~i~v~T~~~l~~~l~~~~--~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~ 155 (432)
+++.... ........+|+|+||+++.+.+.... .+.++++||+|||| +..+.......+..+....+.+.|+++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah-~~~~~~~~~~~~~~~~~~~~~~~~~i~ 205 (412)
T 3fht_A 127 LAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD-VMIATQGHQDQSIRIQRMLPRNCQMLL 205 (412)
T ss_dssp EEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHH-HHHSTTTTHHHHHHHHHTSCTTCEEEE
T ss_pred EEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHH-HHhhcCCcHHHHHHHHhhCCCCceEEE
Confidence 3322221 22223457999999999999886533 56899999999999 444422233335556666666789999
Q ss_pred EecccChHH---HHhhccCCCeeecCCC---CCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHH
Q 014006 156 TSATLDGEK---VSKFFSNCPTLNVPGK---LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (432)
Q Consensus 156 ~SAT~~~~~---~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~ 229 (432)
+|||++... ...++.+...+..... ...+...+...... ......+..+......+++||||+++++++.+
T Consensus 206 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l 282 (412)
T 3fht_A 206 FSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR---DEKFQALCNLYGAITIAQAMIFCHTRKTASWL 282 (412)
T ss_dssp EESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSH---HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHH
T ss_pred EEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCCh---HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHH
Confidence 999998753 4455555554444332 12222222222222 22333444444445667999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCC
Q 014006 230 VSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPS 309 (432)
Q Consensus 230 ~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~ 309 (432)
+..|.+. +..+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||++|+|....+
T Consensus 283 ~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~--- 349 (412)
T 3fht_A 283 AAELSKE----------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG--- 349 (412)
T ss_dssp HHHHHHT----------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSS---
T ss_pred HHHHHhC----------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCC---
Confidence 9999873 777899999999999999999999999999999999999999999999999998754332
Q ss_pred CCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccc
Q 014006 310 SGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (432)
Q Consensus 310 ~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~ 348 (432)
+.|..+|+||+||+||. ++|.|+.++++.+
T Consensus 350 ---------~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 350 ---------NPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp ---------SBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred ---------CcchheeecccCcccCCCCCceEEEEEcChh
Confidence 23788999999999998 6799999998665
No 7
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1e-44 Score=351.02 Aligned_cols=317 Identities=17% Similarity=0.189 Sum_probs=232.7
Q ss_pred chhhhHHHHHHHHhcC--CEEEEEcCCCCCHHH-HHHHHHhhc-CCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCe
Q 014006 5 PILQYEETIVETVEQN--PVVVVIGETGSGKST-QLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEE 80 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~--~~~ii~apTGsGKT~-~~~~~~~~~-~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~ 80 (432)
..+++|.++++.+.++ ++++++||||||||. ++.+++... ....+.++++++|+++|+.|+++.+.+.... .+..
T Consensus 27 ~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~ 105 (395)
T 3pey_A 27 KPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKF-TKIT 105 (395)
T ss_dssp SCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTT-SCCC
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcc-cCee
Confidence 4578999999999988 899999999999994 333333333 2234668999999999999999988765432 2222
Q ss_pred eeee--eeecccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCC-HHHHHHHHHHHHhhhcCCcEEEEE
Q 014006 81 VGYA--IRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLN-TDILLGLVKRLVNLRASKLKILIT 156 (432)
Q Consensus 81 ~g~~--~~~~~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~-~~~~~~~l~~~~~~~~~~~~ii~~ 156 (432)
++.. ...........+|+|+||+++.+.+.... .+.++++||+||||+ ..+ .++ ...+..+....+.+.|++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~ 183 (395)
T 3pey_A 106 SQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADN-MLDQQGL-GDQCIRVKRFLPKDTQLVLF 183 (395)
T ss_dssp EEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHH-HHHSTTH-HHHHHHHHHTSCTTCEEEEE
T ss_pred EEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhh-hcCcccc-HHHHHHHHHhCCCCcEEEEE
Confidence 2211 11222333568999999999998886554 688999999999994 333 333 33355666666667999999
Q ss_pred ecccChHH---HHhhccCCCeeecCCCC---CceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHH
Q 014006 157 SATLDGEK---VSKFFSNCPTLNVPGKL---YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLV 230 (432)
Q Consensus 157 SAT~~~~~---~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~ 230 (432)
|||++... ...++.+...+...... ..+...+..... .......+..+......+++||||+++++++.++
T Consensus 184 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 260 (395)
T 3pey_A 184 SATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKN---EADKFDVLTELYGLMTIGSSIIFVATKKTANVLY 260 (395)
T ss_dssp ESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSS---HHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHH
T ss_pred EecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCc---hHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHH
Confidence 99998642 33444444444333322 222222222211 1233444455555566789999999999999999
Q ss_pred HHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCC
Q 014006 231 SKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSS 310 (432)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~ 310 (432)
+.|.+. +..+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||++|+|..
T Consensus 261 ~~l~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~------- 323 (395)
T 3pey_A 261 GKLKSE----------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTL------- 323 (395)
T ss_dssp HHHHHT----------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBC-------
T ss_pred HHHHhc----------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCC-------
Confidence 999873 677899999999999999999999999999999999999999999999999987651
Q ss_pred CCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccch
Q 014006 311 GMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (432)
Q Consensus 311 ~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~ 349 (432)
...+.|..+|+||+||+||. ++|.|+.++++.+.
T Consensus 324 -----~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 358 (395)
T 3pey_A 324 -----ANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358 (395)
T ss_dssp -----TTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH
T ss_pred -----CcCCCCHHHhhHhccccccCCCCceEEEEEechHH
Confidence 12345889999999999999 67999999976544
No 8
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.9e-45 Score=355.96 Aligned_cols=313 Identities=17% Similarity=0.223 Sum_probs=230.6
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcC-CCCCcEEEecccchhhhHHHHHHHHHHhC---CccCCe
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELG---VRLGEE 80 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~-~~~~~~vl~~~P~~~l~~q~~~~~~~~~~---~~~~~~ 80 (432)
.+++|.++++.+.+++++++.+||||||| +++.+++.... ...+.++++++|+++|+.|+++.+.+... ..++..
T Consensus 60 ~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 139 (410)
T 2j0s_A 60 PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHAC 139 (410)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEE
Confidence 57899999999999999999999999999 44444444332 23567899999999999999998866542 222222
Q ss_pred eeeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 81 VGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 81 ~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
.|...... .......+|+++||+++.+.+.... .+.++++||+|||| +..+.++... +..+....+.+.|++++|
T Consensus 140 ~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah-~~~~~~~~~~-~~~i~~~~~~~~~~i~~S 217 (410)
T 2j0s_A 140 IGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEAD-EMLNKGFKEQ-IYDVYRYLPPATQVVLIS 217 (410)
T ss_dssp CTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH-HHTSTTTHHH-HHHHHTTSCTTCEEEEEE
T ss_pred ECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHH-HHHhhhhHHH-HHHHHHhCccCceEEEEE
Confidence 22111000 0112357899999999998886654 67889999999999 5566555443 556666666668999999
Q ss_pred cccChHH---HHhhccCCCeeecCCC---CCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHH
Q 014006 158 ATLDGEK---VSKFFSNCPTLNVPGK---LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVS 231 (432)
Q Consensus 158 AT~~~~~---~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~ 231 (432)
||++.+. ...++.++..+.+... ...+...+......... ...+..+......+++||||++++.++.+++
T Consensus 218 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k---~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~ 294 (410)
T 2j0s_A 218 ATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWK---FDTLCDLYDTLTITQAVIFCNTKRKVDWLTE 294 (410)
T ss_dssp SCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHH---HHHHHHHHHHHTSSEEEEECSSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhH---HHHHHHHHHhcCCCcEEEEEcCHHHHHHHHH
Confidence 9998754 3345544443333221 12223332222222222 2223333333456799999999999999999
Q ss_pred HHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCC
Q 014006 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (432)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~ 311 (432)
.|.+. ++.+..+||++++++|.++++.|++|..+|||||+++++|+|+|++++||++|.|.
T Consensus 295 ~L~~~----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~--------- 355 (410)
T 2j0s_A 295 KMREA----------NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN--------- 355 (410)
T ss_dssp HHHHT----------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCS---------
T ss_pred HHHhC----------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCC---------
Confidence 99873 77789999999999999999999999999999999999999999999999988754
Q ss_pred CccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 312 ~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
+..+|+||+||+||. ++|.|+.++++.+...
T Consensus 356 ---------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 387 (410)
T 2j0s_A 356 ---------NRELYIHRIGRSGRYGRKGVAINFVKNDDIRI 387 (410)
T ss_dssp ---------SHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHH
T ss_pred ---------CHHHHHHhcccccCCCCceEEEEEecHHHHHH
Confidence 778999999999999 7899999998877543
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.6e-45 Score=358.98 Aligned_cols=315 Identities=17% Similarity=0.187 Sum_probs=220.2
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHH-HHHHHhhcCC-CCCcEEEecccchhhhHHHHHHHHHHhCC---ccC
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGV---RLG 78 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~-~~~~~~~~~~-~~~~~vl~~~P~~~l~~q~~~~~~~~~~~---~~~ 78 (432)
.+.+++|.++++.+.+|+++++.||||||||.. +.+++..... ..+.++++++|+++|+.|+++.+.+.... .++
T Consensus 61 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 140 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 140 (414)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEE
T ss_pred CCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEE
Confidence 356889999999999999999999999999943 3334433322 25668999999999999999988775432 222
Q ss_pred Ceeeeeeee---cccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEE
Q 014006 79 EEVGYAIRF---EDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (432)
Q Consensus 79 ~~~g~~~~~---~~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii 154 (432)
...|..... .......++|+|+||+++.+.+.... .+.++++||+|||| +..+.++... +..+....+.+.|++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah-~~~~~~~~~~-~~~~~~~~~~~~~~i 218 (414)
T 3eiq_A 141 ACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD-EMLSRGFKDQ-IYDIFQKLNSNTQVV 218 (414)
T ss_dssp ECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHH-HHHHTTTHHH-HHHHHTTSCTTCEEE
T ss_pred EEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHH-HhhccCcHHH-HHHHHHhCCCCCeEE
Confidence 222211100 11122568999999999999887654 67889999999999 4444444333 555556555569999
Q ss_pred EEecccChHH---HHhhccCCCeeecCCCCC---ceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHH
Q 014006 155 ITSATLDGEK---VSKFFSNCPTLNVPGKLY---PVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEK 228 (432)
Q Consensus 155 ~~SAT~~~~~---~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~ 228 (432)
+||||++... ...++.+...+....... .+...+......+. ....+..+......+++||||+++++++.
T Consensus 219 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~~~~ 295 (414)
T 3eiq_A 219 LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEW---KLDTLCDLYETLTITQAVIFINTRRKVDW 295 (414)
T ss_dssp EECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTT---HHHHHHHHHHSSCCSSCEEECSCHHHHHH
T ss_pred EEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHh---HHHHHHHHHHhCCCCcEEEEeCCHHHHHH
Confidence 9999998754 345555544444433221 12222222222222 33344455556677899999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecC
Q 014006 229 LVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNP 308 (432)
Q Consensus 229 ~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~ 308 (432)
+++.|.+ .++.+..+||+++.++|.++++.|++|..+|||||+++++|+|+|++++||++|.|.
T Consensus 296 l~~~l~~----------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~------ 359 (414)
T 3eiq_A 296 LTEKMHA----------RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------ 359 (414)
T ss_dssp HHHHHHT----------TTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCS------
T ss_pred HHHHHHh----------cCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCC------
Confidence 9999986 377889999999999999999999999999999999999999999999999988754
Q ss_pred CCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 309 SSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 309 ~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
|..+|+||+||+||. ++|.|+.++++.+...
T Consensus 360 ------------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 391 (414)
T 3eiq_A 360 ------------NRENYIHRIGRGGRFGRKGVAINMVTEEDKRT 391 (414)
T ss_dssp ------------STHHHHHHSCCC-------CEEEEECSTHHHH
T ss_pred ------------CHHHhhhhcCcccCCCCCceEEEEEcHHHHHH
Confidence 777999999999999 6899999998877654
No 10
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.6e-45 Score=365.58 Aligned_cols=317 Identities=16% Similarity=0.168 Sum_probs=119.4
Q ss_pred hhhhHHHHHHHHhcC--CEEEEEcCCCCCHH-HHHHHHHhhcCC-CCCcEEEecccchhhhHHHHHHHHHHhCCccCCee
Q 014006 6 ILQYEETIVETVEQN--PVVVVIGETGSGKS-TQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~--~~~ii~apTGsGKT-~~~~~~~~~~~~-~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~ 81 (432)
.+++|.++++.+..+ +++++.|||||||| .++.+++..... ..+.++++++|+++|+.|+++.+.+......+..+
T Consensus 115 p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~ 194 (479)
T 3fmp_B 115 PSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKL 194 (479)
T ss_dssp CCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCE
T ss_pred CCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceE
Confidence 355699999999987 99999999999999 434445444332 23448999999999999999888776554333333
Q ss_pred eeeee---ecccCCCCceEEEcCHHHHHHHHhcCC--CCCCCcEEEEeCCCcCCCC-HHHHHHHHHHHHhhhcCCcEEEE
Q 014006 82 GYAIR---FEDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLN-TDILLGLVKRLVNLRASKLKILI 155 (432)
Q Consensus 82 g~~~~---~~~~~~~~~~i~v~T~~~l~~~l~~~~--~l~~~~~vViDE~h~~~~~-~~~~~~~l~~~~~~~~~~~~ii~ 155 (432)
++... .........+|+|+||+++.+++.... .+.++++|||||+| ++.+ .++.. .+..+....+.+.|+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah-~~~~~~~~~~-~~~~i~~~~~~~~~~i~ 272 (479)
T 3fmp_B 195 AYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD-VMIATQGHQD-QSIRIQRMLPRNCQMLL 272 (479)
T ss_dssp EEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHH-HHHTSTTHHH-HHHHHHTTSCTTSEEEE
T ss_pred EEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHH-HHhhcCCcHH-HHHHHHhhCCccceEEE
Confidence 32221 122223457899999999999986643 56899999999999 4444 33333 35566666666799999
Q ss_pred EecccChHH---HHhhccCCCeeecCCCCCcee---EEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHH
Q 014006 156 TSATLDGEK---VSKFFSNCPTLNVPGKLYPVE---ILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKL 229 (432)
Q Consensus 156 ~SAT~~~~~---~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~ 229 (432)
+|||++.+. ...++.++..+.+........ ..+..... .......+..++.....+++||||++++.++.+
T Consensus 273 ~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l 349 (479)
T 3fmp_B 273 FSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS---RDEKFQALCNLYGAITIAQAMIFCHTRKTASWL 349 (479)
T ss_dssp EESCCCHHHHHHHHHHSSSEEEEEEC------------------------------------------------------
T ss_pred EeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCC---HHHHHHHHHHHHhhccCCceEEEeCcHHHHHHH
Confidence 999998753 345555555554443221111 11111111 112223333334344567999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCC
Q 014006 230 VSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPS 309 (432)
Q Consensus 230 ~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~ 309 (432)
+..|... +..+..+||++++++|..+++.|++|..+|||||+++++|+|+|++++||++|+|....
T Consensus 350 ~~~L~~~----------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~---- 415 (479)
T 3fmp_B 350 AAELSKE----------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD---- 415 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhC----------CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCc----
Confidence 9999873 77899999999999999999999999999999999999999999999999999875332
Q ss_pred CCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccch
Q 014006 310 SGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (432)
Q Consensus 310 ~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~ 349 (432)
.+.|..+|+||+|||||. ++|.|+.++++.+.
T Consensus 416 --------~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~ 448 (479)
T 3fmp_B 416 --------GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 448 (479)
T ss_dssp -----------------------------------------
T ss_pred --------cCCCHHHHHHHhcccccCCCCceEEEEEcCcch
Confidence 124677999999999998 67999999976653
No 11
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=9.5e-44 Score=345.00 Aligned_cols=312 Identities=18% Similarity=0.181 Sum_probs=231.9
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHHH-HHHHHHhhcC-CCCCcEEEecccchhhhHHHHHHHHHHhC---CccCCe
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELG---VRLGEE 80 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT~-~~~~~~~~~~-~~~~~~vl~~~P~~~l~~q~~~~~~~~~~---~~~~~~ 80 (432)
.+++|.++++.+.+++++++.+|||||||. ++.+++.... ...+.++++++|+++|+.|+++.+.+... ..+...
T Consensus 44 ~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 123 (400)
T 1s2m_A 44 PSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVT 123 (400)
T ss_dssp CCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEE
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEE
Confidence 678999999999999999999999999993 3333333332 23456899999999999999998876653 222222
Q ss_pred eeeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 81 VGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 81 ~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
.|...... .......+|+|+||+++.+.+.... .+.++++||+|||| +..+.++.. .+..+....+...|++++|
T Consensus 124 ~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH-~~~~~~~~~-~~~~i~~~~~~~~~~i~lS 201 (400)
T 1s2m_A 124 TGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD-KMLSRDFKT-IIEQILSFLPPTHQSLLFS 201 (400)
T ss_dssp CSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH-HHSSHHHHH-HHHHHHTTSCSSCEEEEEE
T ss_pred eCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch-HhhhhchHH-HHHHHHHhCCcCceEEEEE
Confidence 22111111 1223567999999999998886553 78899999999999 566665543 4667776666668999999
Q ss_pred cccChHH---HHhhccCCCeeecCCCC--CceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHH
Q 014006 158 ATLDGEK---VSKFFSNCPTLNVPGKL--YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSK 232 (432)
Q Consensus 158 AT~~~~~---~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~ 232 (432)
||++... +..++.++..+...... ..+...+........ ...+..+......+++||||+++++++.+++.
T Consensus 202 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~ 277 (400)
T 1s2m_A 202 ATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQK----LHCLNTLFSKLQINQAIIFCNSTNRVELLAKK 277 (400)
T ss_dssp SCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGH----HHHHHHHHHHSCCSEEEEECSSHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhH----HHHHHHHHhhcCCCcEEEEEecHHHHHHHHHH
Confidence 9998643 44555444333332221 122222222222221 22233333345667999999999999999999
Q ss_pred HHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCC
Q 014006 233 LEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGM 312 (432)
Q Consensus 233 L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~ 312 (432)
|.+. ++.+..+||+++.++|..+++.|++|..+|||||+++++|+|+|++++||+++.|.
T Consensus 278 L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~---------- 337 (400)
T 1s2m_A 278 ITDL----------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPK---------- 337 (400)
T ss_dssp HHHH----------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCS----------
T ss_pred HHhc----------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCC----------
Confidence 9874 67789999999999999999999999999999999999999999999999988754
Q ss_pred ccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 313 YSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 313 ~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
|..+|+||+||+||. ++|.|+.++++.+...
T Consensus 338 --------s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~ 369 (400)
T 1s2m_A 338 --------TAETYLHRIGRSGRFGHLGLAINLINWNDRFN 369 (400)
T ss_dssp --------SHHHHHHHHCBSSCTTCCEEEEEEECGGGHHH
T ss_pred --------CHHHHHHhcchhcCCCCCceEEEEeccchHHH
Confidence 778999999999999 7899999999887654
No 12
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-45 Score=386.65 Aligned_cols=327 Identities=15% Similarity=0.169 Sum_probs=240.6
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeee
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g 82 (432)
.++++++|.++++.+.+|++++++||||||||+.+...+.... ..+.+++|++|+++|+.|+++++.+.++ .++...|
T Consensus 182 ~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~~-~VglltG 259 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPIKALSNQKYRELLAEFG-DVGLMTG 259 (1108)
T ss_dssp SSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHTS-SEEEECS
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEcCcHHHHHHHHHHHHHHhC-CccEEeC
Confidence 3578899999999999999999999999999944332222221 3467999999999999999999988887 4444443
Q ss_pred eeeeecccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccC
Q 014006 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (432)
Q Consensus 83 ~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~ 161 (432)
+......++|+|+|||+|.+++.... .+.++++||||||| ++.+.++... +..++...+.+.|+|+||||++
T Consensus 260 -----d~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~~-~e~ii~~l~~~~qvl~lSATip 332 (1108)
T 3l9o_A 260 -----DITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVV-WEETIILLPDKVRYVFLSATIP 332 (1108)
T ss_dssp -----SCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHHH-HHHHHHHSCTTSEEEEEECSCS
T ss_pred -----ccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh-hccccchHHH-HHHHHHhcCCCceEEEEcCCCC
Confidence 33345678999999999999987765 48899999999999 7777766554 5555566666799999999995
Q ss_pred h-HHHHhhccC-----CCeeecCCCCCceeEEeCCCCCc----------c-----h------------------------
Q 014006 162 G-EKVSKFFSN-----CPTLNVPGKLYPVEILHSKERPT----------S-----Y------------------------ 196 (432)
Q Consensus 162 ~-~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~----------~-----~------------------------ 196 (432)
. ..+..|+.. ..++....++.|+..++...... . +
T Consensus 333 n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 412 (1108)
T 3l9o_A 333 NAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKK 412 (1108)
T ss_dssp SCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------
T ss_pred CHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccccccccccccc
Confidence 4 456777642 34455566666665443211000 0 0
Q ss_pred ------------HHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCC---------------------
Q 014006 197 ------------LESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEG--------------------- 243 (432)
Q Consensus 197 ------------~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~--------------------- 243 (432)
....+..++..+.....+++||||+|++.|+.++..|..........
T Consensus 413 ~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~ 492 (1108)
T 3l9o_A 413 GQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRE 492 (1108)
T ss_dssp ------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTC
T ss_pred ccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhh
Confidence 02223334444445667799999999999999999886531110000
Q ss_pred --------CCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccc
Q 014006 244 --------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSL 315 (432)
Q Consensus 244 --------~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~ 315 (432)
.....++.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++.+. +. .
T Consensus 493 l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~----d~------~ 562 (1108)
T 3l9o_A 493 LPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKW----DG------Q 562 (1108)
T ss_dssp CHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEE----SS------S
T ss_pred hhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCccc----Cc------c
Confidence 00112288999999999999999999999999999999999999999999999977543 21 1
Q ss_pred eEeeecHhhHHHhhcccCCCC---CCeEEEecCccc
Q 014006 316 DVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTV 348 (432)
Q Consensus 316 ~~~~~s~~~~~qr~GRaGR~~---~G~~~~l~~~~~ 348 (432)
...|+|..+|+||+|||||.+ .|.||.++++..
T Consensus 563 ~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 563 QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 245889999999999999996 899999997763
No 13
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.9e-44 Score=360.44 Aligned_cols=307 Identities=17% Similarity=0.161 Sum_probs=222.4
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHHH--HHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeee
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKST--QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT~--~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~ 83 (432)
.+++|+++++.+.+|+++++.+|||+|||. ++|.+. ..+++++++|+++|+.|+.+.+.+. +..+....|.
T Consensus 45 ~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~~q~~~~l~~~-gi~~~~l~~~ 117 (591)
T 2v1x_A 45 FRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLMEDQLMVLKQL-GISATMLNAS 117 (591)
T ss_dssp CCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHHHHHHHHHHHH-TCCEEECCSS
T ss_pred CCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhc-CCcEEEEeCC
Confidence 467899999999999999999999999993 444432 2458999999999999999988665 5554433332
Q ss_pred eeeeccc--------CCCCceEEEcCHHHHH------HHHhcCCCCCCCcEEEEeCCCcCC-----CCHHHHHHHHHHHH
Q 014006 84 AIRFEDR--------TSERTLIKYLTDGVLL------REILSNPDLSPYSVIILDEAHERS-----LNTDILLGLVKRLV 144 (432)
Q Consensus 84 ~~~~~~~--------~~~~~~i~v~T~~~l~------~~l~~~~~l~~~~~vViDE~h~~~-----~~~~~~~~~l~~~~ 144 (432)
....+.. .....+|+|+||+++. +.+.....+.++++|||||||+.. +..++.. +..+.
T Consensus 118 ~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~--l~~l~ 195 (591)
T 2v1x_A 118 SSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKA--LGILK 195 (591)
T ss_dssp CCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGG--GGHHH
T ss_pred CCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHH--HHHHH
Confidence 2111110 3467899999999874 222222256789999999999732 2233211 23344
Q ss_pred hhhcCCcEEEEEecccChHH---HHhhccCCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhc-CCCCCEEEEe
Q 014006 145 NLRASKLKILITSATLDGEK---VSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVR-EPEGDVLIFM 220 (432)
Q Consensus 145 ~~~~~~~~ii~~SAT~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lvF~ 220 (432)
...+ +.+++++|||++... +..++.......+..........+...............+...... ..++++||||
T Consensus 196 ~~~~-~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~ 274 (591)
T 2v1x_A 196 RQFP-NASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYC 274 (591)
T ss_dssp HHCT-TSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEEC
T ss_pred HhCC-CCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEe
Confidence 4444 489999999998753 5566654332222221111111221111111223344445554432 3567999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCc
Q 014006 221 TGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (432)
Q Consensus 221 ~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~ 300 (432)
+|+++++.++..|.. .++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+|+|++||++++
T Consensus 275 ~sr~~~e~la~~L~~----------~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~ 344 (591)
T 2v1x_A 275 FSQKDSEQVTVSLQN----------LGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSM 344 (591)
T ss_dssp SSHHHHHHHHHHHHH----------TTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSC
T ss_pred CcHHHHHHHHHHHHH----------CCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCC
Confidence 999999999999987 3788999999999999999999999999999999999999999999999999998
Q ss_pred ccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchh
Q 014006 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (432)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (432)
|+ |.++|+||+|||||. ++|.|+.+|+..+..
T Consensus 345 p~------------------s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~ 377 (591)
T 2v1x_A 345 SK------------------SMENYYQESGRAGRDDMKADCILYYGFGDIF 377 (591)
T ss_dssp CS------------------SHHHHHHHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred CC------------------CHHHHHHHhccCCcCCCCceEEEEEChHHHH
Confidence 76 788999999999999 689999999877653
No 14
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.1e-43 Score=343.50 Aligned_cols=310 Identities=17% Similarity=0.175 Sum_probs=229.6
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHHH-HHHHHHhhcC-CCCCcEEEecccchhhhHHHHHHHHHHhCC----ccCC
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGV----RLGE 79 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT~-~~~~~~~~~~-~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~----~~~~ 79 (432)
.+++|.++++.+.+++++++.+|||+|||. ++.+++.... ...+.++++++|+++|+.|+++.+.+.... .++.
T Consensus 31 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 110 (391)
T 1xti_A 31 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV 110 (391)
T ss_dssp CCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEE
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 688999999999999999999999999993 3333443332 234568999999999999999988776533 2222
Q ss_pred eeeeeeeecc---cCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCC-HHHHHHHHHHHHhhhcCCcEEE
Q 014006 80 EVGYAIRFED---RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLN-TDILLGLVKRLVNLRASKLKIL 154 (432)
Q Consensus 80 ~~g~~~~~~~---~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~-~~~~~~~l~~~~~~~~~~~~ii 154 (432)
..|....... ......+|+++||+++...+.... .+.++++||+|||| +..+ .++... +..+....+...|++
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH-~~~~~~~~~~~-~~~~~~~~~~~~~~i 188 (391)
T 1xti_A 111 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD-KMLEQLDMRRD-VQEIFRMTPHEKQVM 188 (391)
T ss_dssp ECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH-HHTSSHHHHHH-HHHHHHTSCSSSEEE
T ss_pred EeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH-HHhhccchHHH-HHHHHhhCCCCceEE
Confidence 2221110000 011346999999999998886554 68899999999999 4444 444443 566666666669999
Q ss_pred EEecccChH---HHHhhccCCCeeecCCCC----CceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHH
Q 014006 155 ITSATLDGE---KVSKFFSNCPTLNVPGKL----YPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIE 227 (432)
Q Consensus 155 ~~SAT~~~~---~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~ 227 (432)
++|||++.. .+..++.++..+...... ..+...+........ ...+..+......+++||||+++++++
T Consensus 189 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~~~~lvf~~~~~~~~ 264 (391)
T 1xti_A 189 MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEK----NRKLFDLLDVLEFNQVVIFVKSVQRCI 264 (391)
T ss_dssp EEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGH----HHHHHHHHHHSCCSEEEEECSCHHHHH
T ss_pred EEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhH----HHHHHHHHHhcCCCcEEEEeCcHHHHH
Confidence 999999764 355666555444433221 122222222222222 222333333456789999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeec
Q 014006 228 KLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYN 307 (432)
Q Consensus 228 ~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~ 307 (432)
.+++.|.+. ++.+..+||+++.++|.++++.|++|..+|||||+++++|+|+|++++||+++.|.
T Consensus 265 ~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~----- 329 (391)
T 1xti_A 265 ALAQLLVEQ----------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPE----- 329 (391)
T ss_dssp HHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCS-----
T ss_pred HHHHHHHhC----------CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCC-----
Confidence 999999873 77789999999999999999999999999999999999999999999999988754
Q ss_pred CCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccch
Q 014006 308 PSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (432)
Q Consensus 308 ~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~ 349 (432)
|..+|+||+||+||. ++|.|+.++++.+.
T Consensus 330 -------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 330 -------------DSDTYLHRVARAGRFGTKGLAITFVSDEND 359 (391)
T ss_dssp -------------SHHHHHHHHCBCSSSCCCCEEEEEECSHHH
T ss_pred -------------CHHHHHHhcccccCCCCceEEEEEEcccch
Confidence 778999999999999 78999999987644
No 15
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.3e-44 Score=350.09 Aligned_cols=313 Identities=18% Similarity=0.163 Sum_probs=224.2
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhc-C------------------CCCCcEEEecccchhhhHH
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH-G------------------YTKSGIIGVTQPRRVAAVS 64 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~-~------------------~~~~~~vl~~~P~~~l~~q 64 (432)
..+++|.++++.+.++++++++|||||||| +++.+++... . ...+.++++++|+++|+.|
T Consensus 37 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 116 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQ 116 (417)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHH
Confidence 356889999999999999999999999999 3333333221 1 1123579999999999999
Q ss_pred HHHHHHHHhC---CccCCeeeeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHH
Q 014006 65 VARRVAQELG---VRLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLG 138 (432)
Q Consensus 65 ~~~~~~~~~~---~~~~~~~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~ 138 (432)
+++++.+... ..+....|...... ......++|+|+||+++.+.+.... .+.++++||+|||| +..+.++...
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah-~~~~~~~~~~ 195 (417)
T 2i4i_A 117 IYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEAD-RMLDMGFEPQ 195 (417)
T ss_dssp HHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHH-HHHHTTCHHH
T ss_pred HHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChh-HhhccCcHHH
Confidence 9999876653 22222223111111 1123467999999999999886655 68899999999999 4444443333
Q ss_pred HHHHHHhh--hc--CCcEEEEEecccChHH---HHhhccCCCeeecCCC---CCceeEEeCCCCCcchHHHHHHHHHHHH
Q 014006 139 LVKRLVNL--RA--SKLKILITSATLDGEK---VSKFFSNCPTLNVPGK---LYPVEILHSKERPTSYLESALKTAIDIH 208 (432)
Q Consensus 139 ~l~~~~~~--~~--~~~~ii~~SAT~~~~~---~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (432)
+..+... .+ ...|++++|||++.+. ...++.+...+.+... ...+...+........ ...+..+.
T Consensus 196 -~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~l~~~l 270 (417)
T 2i4i_A 196 -IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK----RSFLLDLL 270 (417)
T ss_dssp -HHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGH----HHHHHHHH
T ss_pred -HHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhH----HHHHHHHH
Confidence 4555442 12 2479999999997642 4455554443333221 1122222222222221 22233333
Q ss_pred hc-CCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCccccc
Q 014006 209 VR-EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSL 287 (432)
Q Consensus 209 ~~-~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gi 287 (432)
.. ..++++||||+++++++.+++.|.+ .++.+..+||+++.++|.++++.|++|+.+|||||+++++|+
T Consensus 271 ~~~~~~~~~lVf~~~~~~~~~l~~~L~~----------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gi 340 (417)
T 2i4i_A 271 NATGKDSLTLVFVETKKGADSLEDFLYH----------EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGL 340 (417)
T ss_dssp HTCCTTCEEEEECSSHHHHHHHHHHHHH----------TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTS
T ss_pred HhcCCCCeEEEEECCHHHHHHHHHHHHH----------CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCC
Confidence 33 3567999999999999999999987 377899999999999999999999999999999999999999
Q ss_pred ccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 288 TVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 288 di~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
|+|++++||++|.|. |..+|+||+||+||. ++|.|+.++++.+...
T Consensus 341 dip~v~~Vi~~~~p~------------------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 341 DISNVKHVINFDLPS------------------DIEEYVHRIGRTGRVGNLGLATSFFNERNINI 387 (417)
T ss_dssp CCCCEEEEEESSCCS------------------SHHHHHHHHTTBCC--CCEEEEEEECGGGGGG
T ss_pred CcccCCEEEEEcCCC------------------CHHHHHHhcCccccCCCCceEEEEEccccHHH
Confidence 999999999988754 778999999999999 6799999998877654
No 16
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.3e-43 Score=390.23 Aligned_cols=416 Identities=17% Similarity=0.122 Sum_probs=275.5
Q ss_pred hhhHHHHHHHHh-cCCEEEEEcCCCCCHHHHHH-HHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeee
Q 014006 7 LQYEETIVETVE-QNPVVVVIGETGSGKSTQLS-QILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (432)
Q Consensus 7 ~~~q~~i~~~i~-~~~~~ii~apTGsGKT~~~~-~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~ 84 (432)
++.|.++++.+. .+++++++||||||||.++. +++.......+.+++++.|+++|+.|+++.+.+.++...|..++..
T Consensus 928 npiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~l 1007 (1724)
T 4f92_B 928 NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLL 1007 (1724)
T ss_dssp CHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEEC
T ss_pred CHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEE
Confidence 457889999885 57789999999999994433 3333333345678999999999999999999887766555555432
Q ss_pred ee---ecccCCCCceEEEcCHHHHHHHHhcCC---CCCCCcEEEEeCCCcCCCCHH-HHHHHHHH---HHhhhcCCcEEE
Q 014006 85 IR---FEDRTSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNTD-ILLGLVKR---LVNLRASKLKIL 154 (432)
Q Consensus 85 ~~---~~~~~~~~~~i~v~T~~~l~~~l~~~~---~l~~~~~vViDE~h~~~~~~~-~~~~~l~~---~~~~~~~~~~ii 154 (432)
.. .+.....+++|+|+|||++..++.+.. .++++++||+||+|...-+.+ .+..++.+ +....+.+.|+|
T Consensus 1008 tGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI 1087 (1724)
T 4f92_B 1008 TGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIV 1087 (1724)
T ss_dssp CSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEE
T ss_pred ECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEE
Confidence 21 122223568999999999877665322 578999999999994222222 23333333 333445568999
Q ss_pred EEeccc-ChHHHHhhccCC--Ce--eecCCCCCceeEEeCCCCCcchHH---HHHHHHHH-HHhcCCCCCEEEEeCCHHH
Q 014006 155 ITSATL-DGEKVSKFFSNC--PT--LNVPGKLYPVEILHSKERPTSYLE---SALKTAID-IHVREPEGDVLIFMTGQDD 225 (432)
Q Consensus 155 ~~SAT~-~~~~~~~~~~~~--~~--i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~lvF~~t~~~ 225 (432)
+||||+ |.+.+++|++.. .. +....++.|++.+........... ...+.+.. +......+++||||+|++.
T Consensus 1088 ~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~ 1167 (1724)
T 4f92_B 1088 ALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQ 1167 (1724)
T ss_dssp EEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHH
T ss_pred EEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHH
Confidence 999999 567899999643 22 333446666665543222222211 11122222 2234567799999999999
Q ss_pred HHHHHHHHHHHHhhccCC------------------------CCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeec
Q 014006 226 IEKLVSKLEDKIRSLDEG------------------------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTN 281 (432)
Q Consensus 226 ~~~~~~~L~~~~~~~~~~------------------------~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~ 281 (432)
|+.++..|.......... .....++++|||||++++|..+++.|++|.++|||||+
T Consensus 1168 ~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~ 1247 (1724)
T 4f92_B 1168 TRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASR 1247 (1724)
T ss_dssp HHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEG
T ss_pred HHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEECh
Confidence 999999886654321110 01133589999999999999999999999999999999
Q ss_pred CcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC---CCeEEEecCccchhhc--CCCC
Q 014006 282 IAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHDE--FLDV 356 (432)
Q Consensus 282 ~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~---~G~~~~l~~~~~~~~~--~~~~ 356 (432)
++++|||+|++++||... ..||... ....+.+..+|+||+|||||.+ .|.|+.++.+.+.... +...
T Consensus 1248 tlA~GVnlPa~~VVI~~~----~~~dg~~----~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~ 1319 (1724)
T 4f92_B 1248 SLCWGMNVAAHLVIIMDT----QYYNGKI----HAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYE 1319 (1724)
T ss_dssp GGSSSCCCCBSEEEEECS----EEEETTT----TEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTS
T ss_pred HHHcCCCCCccEEEEecC----ccccCcc----cccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCC
Confidence 999999999999999632 3455433 2345779999999999999984 6999999866544321 2211
Q ss_pred CCC--ccccCCchHHHHHHhhCCCCCCcc-----ccccC-------------CCC--------CCHHHHHHHHHHHHHcc
Q 014006 357 TVP--EIQRSSLAGSVLYLKSLDLSDINV-----LKFDF-------------LDP--------PSSESLEDALKQLYLID 408 (432)
Q Consensus 357 ~~~--~i~~~~l~~~~l~l~~~~~~~~~~-----~~~~~-------------~~~--------p~~~~l~~~~~~L~~~g 408 (432)
..| .-+...+.+.++.....+.-.... ....| +.. ...+.++++++.|++.|
T Consensus 1320 ~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~ 1399 (1724)
T 4f92_B 1320 PLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK 1399 (1724)
T ss_dssp CBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHCC
Confidence 111 112234445555444443321000 00011 111 12345678999999999
Q ss_pred CCC--CCC--CCCHHHHHhhcCCCCC
Q 014006 409 AID--ENG--SITSIGRTMAGTSFFA 430 (432)
Q Consensus 409 ~i~--~~~--~~t~lG~~~~~l~~~~ 430 (432)
+|+ +++ .+|++|++++.+++++
T Consensus 1400 ~I~~~~~~~l~~T~lG~i~s~~yi~~ 1425 (1724)
T 4f92_B 1400 CISIEDEMDVAPLNLGMIAAYYYINY 1425 (1724)
T ss_dssp SEEEETTTEEEECHHHHHHHHTTCCH
T ss_pred CEEEcCCCCEeecHHHHHHHHHCCCH
Confidence 995 344 5799999999999875
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.2e-43 Score=335.63 Aligned_cols=311 Identities=20% Similarity=0.261 Sum_probs=231.5
Q ss_pred chhhhHHHHHHHHhcC-CEEEEEcCCCCCHHHH-HHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCc---cCC
Q 014006 5 PILQYEETIVETVEQN-PVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR---LGE 79 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~-~~~ii~apTGsGKT~~-~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~---~~~ 79 (432)
..+++|.++++.+.++ +++++.+|||||||.. +.+++.......+.++++++|+++|+.|+++++.+.++.. +..
T Consensus 28 ~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~ 107 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAK 107 (367)
T ss_dssp SCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEE
T ss_pred CCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEE
Confidence 4678999999998887 6999999999999943 3334444433456789999999999999999998876542 111
Q ss_pred eeeeeeee-cccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 80 EVGYAIRF-EDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 80 ~~g~~~~~-~~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
..|..... ........+|+++||+++.+.+.... .+.+++++|+|||| ...+.++... +..+....+...+++++|
T Consensus 108 ~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah-~~~~~~~~~~-~~~~~~~~~~~~~~i~~S 185 (367)
T 1hv8_A 108 IYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD-EMLNMGFIKD-VEKILNACNKDKRILLFS 185 (367)
T ss_dssp ECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH-HHHTTTTHHH-HHHHHHTSCSSCEEEEEC
T ss_pred EECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch-HhhhhchHHH-HHHHHHhCCCCceEEEEe
Confidence 12211000 00111367999999999998886654 68899999999999 4444444443 555555555568999999
Q ss_pred cccChHH---HHhhccCCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHH
Q 014006 158 ATLDGEK---VSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLE 234 (432)
Q Consensus 158 AT~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~ 234 (432)
||++.+. +..++++...+..... ..+...+......+... .+.... ...++++||||+++++++.+++.|.
T Consensus 186 AT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~l~~~l-~~~~~~~lvf~~~~~~~~~l~~~L~ 259 (367)
T 1hv8_A 186 ATMPREILNLAKKYMGDYSFIKAKIN-ANIEQSYVEVNENERFE----ALCRLL-KNKEFYGLVFCKTKRDTKELASMLR 259 (367)
T ss_dssp SSCCHHHHHHHHHHCCSEEEEECCSS-SSSEEEEEECCGGGHHH----HHHHHH-CSTTCCEEEECSSHHHHHHHHHHHH
T ss_pred eccCHHHHHHHHHHcCCCeEEEecCC-CCceEEEEEeChHHHHH----HHHHHH-hcCCCcEEEEECCHHHHHHHHHHHH
Confidence 9998753 4566655444433322 23333333323333222 223333 2567799999999999999999998
Q ss_pred HHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCcc
Q 014006 235 DKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYS 314 (432)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~ 314 (432)
+ .+..+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 260 ~----------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~------------ 317 (367)
T 1hv8_A 260 D----------IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQ------------ 317 (367)
T ss_dssp H----------TTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCS------------
T ss_pred h----------cCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCC------------
Confidence 7 377889999999999999999999999999999999999999999999999988654
Q ss_pred ceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 315 LDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 315 ~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
|..+|+||+||+||. ++|.|+.++++.++..
T Consensus 318 ------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 349 (367)
T 1hv8_A 318 ------NPESYMHRIGRTGRAGKKGKAISIINRREYKK 349 (367)
T ss_dssp ------CHHHHHHHSTTTCCSSSCCEEEEEECTTSHHH
T ss_pred ------CHHHhhhcccccccCCCccEEEEEEcHHHHHH
Confidence 778999999999999 6899999998877654
No 18
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.6e-43 Score=387.98 Aligned_cols=416 Identities=17% Similarity=0.165 Sum_probs=271.9
Q ss_pred hhhhHHHHHHHH-hcCCEEEEEcCCCCCHHHHH-HHHHhhcC---------CCCCcEEEecccchhhhHHHHHHHHHHhC
Q 014006 6 ILQYEETIVETV-EQNPVVVVIGETGSGKSTQL-SQILHRHG---------YTKSGIIGVTQPRRVAAVSVARRVAQELG 74 (432)
Q Consensus 6 ~~~~q~~i~~~i-~~~~~~ii~apTGsGKT~~~-~~~~~~~~---------~~~~~~vl~~~P~~~l~~q~~~~~~~~~~ 74 (432)
+++.|.++++.+ ..++|++++||||||||..+ .+++.... ...+.+++++.|+++|+.|+++.+.+.++
T Consensus 80 ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~ 159 (1724)
T 4f92_B 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLA 159 (1724)
T ss_dssp CCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHh
Confidence 346788888865 57889999999999999332 23332221 12466999999999999999999977664
Q ss_pred ---CccCCeeeeeeeecccCCCCceEEEcCHHHHHHHHhcCC---CCCCCcEEEEeCCCcCCCCHH-HHHHHHHHHH---
Q 014006 75 ---VRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNTD-ILLGLVKRLV--- 144 (432)
Q Consensus 75 ---~~~~~~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~---~l~~~~~vViDE~h~~~~~~~-~~~~~l~~~~--- 144 (432)
..++..+|. ..........++|+|+|||++..++.+.. .++++++|||||+|...-+.+ .+..++.++.
T Consensus 160 ~~gi~V~~~tGd-~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~ 238 (1724)
T 4f92_B 160 TYGITVAELTGD-HQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNI 238 (1724)
T ss_dssp TTTCCEEECCSS-CSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHH
T ss_pred hCCCEEEEEECC-CCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHH
Confidence 344444442 11222223568999999999865554432 578999999999994221222 2333344433
Q ss_pred hhhcCCcEEEEEeccc-ChHHHHhhccCCC-----eeecCCCCCceeEEeCCCCCcchH---HHHHHHHHHHH-hcCCCC
Q 014006 145 NLRASKLKILITSATL-DGEKVSKFFSNCP-----TLNVPGKLYPVEILHSKERPTSYL---ESALKTAIDIH-VREPEG 214 (432)
Q Consensus 145 ~~~~~~~~ii~~SAT~-~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~ 214 (432)
...+..+|+|+||||+ |.+++++|++..+ .+....++.|++..+......... ......+.... ....++
T Consensus 239 ~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 318 (1724)
T 4f92_B 239 EMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKN 318 (1724)
T ss_dssp HHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred HhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCC
Confidence 2344568999999999 5578999996532 333444666776655433222221 11222222222 233467
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHhhccCC---------------------------CCCCeEEEEecCCCCHHHHhccCC
Q 014006 215 DVLIFMTGQDDIEKLVSKLEDKIRSLDEG---------------------------SCMDAVILPLHGSLPPEMQVRVFS 267 (432)
Q Consensus 215 ~~lvF~~t~~~~~~~~~~L~~~~~~~~~~---------------------------~~~~~~~~~~h~~l~~~~r~~~~~ 267 (432)
++||||+||+.|+.+++.|.+........ .....++++|||||+.++|..+++
T Consensus 319 ~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~ 398 (1724)
T 4f92_B 319 QVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVED 398 (1724)
T ss_dssp CEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHH
T ss_pred cEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHH
Confidence 99999999999999999998754321100 012335889999999999999999
Q ss_pred CCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC---CCeEEEec
Q 014006 268 PPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLY 344 (432)
Q Consensus 268 ~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~---~G~~~~l~ 344 (432)
.|++|.++|||||+++++|||+|++++||.. ...|++..|. ..+.|..+|.||+|||||.+ .|.++.+.
T Consensus 399 ~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~~----~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~ 470 (1724)
T 4f92_B 399 LFADKHIQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKGR----WTELGALDILQMLGRAGRPQYDTKGEGILIT 470 (1724)
T ss_dssp HHHTTCCCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTTE----EEECCHHHHHHHHTTBSCTTTCSCEEEEEEE
T ss_pred HHHCCCCeEEEEcchhHhhCCCCCceEEEeC----CEEecCcCCC----cccCCHHHHHHhhhhccCCCCCCccEEEEEe
Confidence 9999999999999999999999999999963 3457765542 35789999999999999983 69999998
Q ss_pred Cccchhhc--CCCCCCC--ccccCCchHHHHHHhhCCC-CCC--------------------cc--------ccccCCCC
Q 014006 345 PSTVYHDE--FLDVTVP--EIQRSSLAGSVLYLKSLDL-SDI--------------------NV--------LKFDFLDP 391 (432)
Q Consensus 345 ~~~~~~~~--~~~~~~~--~i~~~~l~~~~l~l~~~~~-~~~--------------------~~--------~~~~~~~~ 391 (432)
++.+.... +.....| .-....+.+.+.+...+|. .+. .. ...+.++.
T Consensus 471 ~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~ 550 (1724)
T 4f92_B 471 SHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQ 550 (1724)
T ss_dssp ESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHH
T ss_pred cchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHH
Confidence 76654331 2111111 1112233333333222221 110 00 00011111
Q ss_pred CCHHHHHHHHHHHHHccCCC--C-CC--CCCHHHHHhhcCCCCC
Q 014006 392 PSSESLEDALKQLYLIDAID--E-NG--SITSIGRTMAGTSFFA 430 (432)
Q Consensus 392 p~~~~l~~~~~~L~~~g~i~--~-~~--~~t~lG~~~~~l~~~~ 430 (432)
...+.+..++..|.+.|+|. + +| .+|++|++++++++++
T Consensus 551 ~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~ 594 (1724)
T 4f92_B 551 RRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITN 594 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCH
Confidence 12344678999999999994 2 33 6999999999999864
No 19
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4e-43 Score=355.40 Aligned_cols=319 Identities=18% Similarity=0.178 Sum_probs=220.9
Q ss_pred hhhhHHHHHHHHh--cCCEEEEEcCCCCCHH-HHHHHHHhhcC-----CCCCcEEEecccchhhhHHHHHHHHHHhCCc-
Q 014006 6 ILQYEETIVETVE--QNPVVVVIGETGSGKS-TQLSQILHRHG-----YTKSGIIGVTQPRRVAAVSVARRVAQELGVR- 76 (432)
Q Consensus 6 ~~~~q~~i~~~i~--~~~~~ii~apTGsGKT-~~~~~~~~~~~-----~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~- 76 (432)
.+++|.++++.+. ++++++++|||||||| +++.+++.... ...+.++++++|+++|+.|+++.+.+..+..
T Consensus 95 ~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~ 174 (563)
T 3i5x_A 95 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 174 (563)
T ss_dssp CCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhcc
Confidence 6789999999998 6789999999999999 33333333221 1224589999999999999999987754321
Q ss_pred ------cCCeeeeeeeec---ccCCCCceEEEcCHHHHHHHHhcC--CCCCCCcEEEEeCCCcCCCCHHHHHH---HHHH
Q 014006 77 ------LGEEVGYAIRFE---DRTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTDILLG---LVKR 142 (432)
Q Consensus 77 ------~~~~~g~~~~~~---~~~~~~~~i~v~T~~~l~~~l~~~--~~l~~~~~vViDE~h~~~~~~~~~~~---~l~~ 142 (432)
+....|...... ......++|+|+||+++.+.+... ..+.++++||||||| ++.+.++... ++..
T Consensus 175 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah-~l~~~~f~~~~~~i~~~ 253 (563)
T 3i5x_A 175 GLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD-RLLEIGFRDDLETISGI 253 (563)
T ss_dssp GGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH-HHTSTTTHHHHHHHHHH
T ss_pred ccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHH-HHhccchHHHHHHHHHh
Confidence 111112110000 011236799999999999887543 267889999999999 4555443222 2222
Q ss_pred HHhhh---cCCcEEEEEecccChHH--HH-hhccCCCeeecCC-------CCCceeEEeC-CCCCcchHHHHHHHHHHHH
Q 014006 143 LVNLR---ASKLKILITSATLDGEK--VS-KFFSNCPTLNVPG-------KLYPVEILHS-KERPTSYLESALKTAIDIH 208 (432)
Q Consensus 143 ~~~~~---~~~~~ii~~SAT~~~~~--~~-~~~~~~~~i~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 208 (432)
+.... +.+.|+++||||++... +. .++.+...+.+.. ....+...+. ..............+....
T Consensus 254 l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 333 (563)
T 3i5x_A 254 LNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQI 333 (563)
T ss_dssp HHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHH
T ss_pred hhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHH
Confidence 22211 22579999999998643 33 3333333332211 0111111111 1111222223333333333
Q ss_pred h-cCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCccccc
Q 014006 209 V-REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSL 287 (432)
Q Consensus 209 ~-~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gi 287 (432)
. ...++++||||+|++.++.++..|.+... .++.+..+||+|++++|..+++.|++|+.+|||||+++++||
T Consensus 334 ~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gi 406 (563)
T 3i5x_A 334 KERDSNYKAIIFAPTVKFTSFLCSILKNEFK-------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM 406 (563)
T ss_dssp HHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSC
T ss_pred hhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-------CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCC
Confidence 2 35677999999999999999999988632 267799999999999999999999999999999999999999
Q ss_pred ccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchh
Q 014006 288 TVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (432)
Q Consensus 288 di~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (432)
|+|++++||++|.|. |..+|+||+|||||. ++|.|+.++++.+..
T Consensus 407 Dip~v~~VI~~~~p~------------------s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~ 452 (563)
T 3i5x_A 407 DFPNVHEVLQIGVPS------------------ELANYIHRIGRTARSGKEGSSVLFICKDELP 452 (563)
T ss_dssp CCTTCCEEEEESCCS------------------STTHHHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred CcccCCEEEEECCCC------------------chhhhhhhcCccccCCCCceEEEEEchhHHH
Confidence 999999999988765 677999999999999 689999999877653
No 20
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3.3e-43 Score=351.50 Aligned_cols=298 Identities=21% Similarity=0.263 Sum_probs=218.5
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeee
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g 82 (432)
.+|++.+|+++++.+.++++++++||||||||++++..+.. .+.++++++|+|+|+.|+++++.+.++..++..+|
T Consensus 215 ~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~----~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG 290 (666)
T 3o8b_A 215 RSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA----QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTG 290 (666)
T ss_dssp HSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH----TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECS
T ss_pred cCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH----CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 47999999999999999999999999999999666555443 24589999999999999999999999888777776
Q ss_pred eeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCc--EEEEEeccc
Q 014006 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL--KILITSATL 160 (432)
Q Consensus 83 ~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~--~ii~~SAT~ 160 (432)
+.. ...+.+|+|+|||+|+. .....+.++++||||||| .++.++... +..+....+... .+++||||+
T Consensus 291 ~~~-----~~~~~~IlV~TPGrLl~--~~~l~l~~l~~lVlDEAH--~l~~~~~~~-l~~Il~~l~~~~~~llil~SAT~ 360 (666)
T 3o8b_A 291 VRT-----ITTGAPVTYSTYGKFLA--DGGCSGGAYDIIICDECH--STDSTTILG-IGTVLDQAETAGARLVVLATATP 360 (666)
T ss_dssp SCE-----ECCCCSEEEEEHHHHHH--TTSCCTTSCSEEEETTTT--CCSHHHHHH-HHHHHHHTTTTTCSEEEEEESSC
T ss_pred cEe-----ccCCCCEEEECcHHHHh--CCCcccCcccEEEEccch--hcCccHHHH-HHHHHHhhhhcCCceEEEECCCC
Confidence 432 35678999999999732 222367789999999999 566666544 444444444323 478889999
Q ss_pred ChHHHHhhccCCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhc
Q 014006 161 DGEKVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (432)
Q Consensus 161 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~ 240 (432)
+... . ........+...... ...+.... .. .....++++||||+|+++++.+++.|++
T Consensus 361 ~~~i-~--~~~p~i~~v~~~~~~-~i~~~~~~-~~------------l~~~~~~~vLVFv~Tr~~ae~la~~L~~----- 418 (666)
T 3o8b_A 361 PGSV-T--VPHPNIEEVALSNTG-EIPFYGKA-IP------------IEAIRGGRHLIFCHSKKKCDELAAKLSG----- 418 (666)
T ss_dssp TTCC-C--CCCTTEEEEECBSCS-SEEETTEE-EC------------GGGSSSSEEEEECSCHHHHHHHHHHHHT-----
T ss_pred Cccc-c--cCCcceEEEeecccc-hhHHHHhh-hh------------hhhccCCcEEEEeCCHHHHHHHHHHHHh-----
Confidence 7631 0 001111111000000 00110000 00 1123578999999999999999999987
Q ss_pred cCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCccccee----ecCCCCCccce
Q 014006 241 DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ----YNPSSGMYSLD 316 (432)
Q Consensus 241 ~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~----~~~~~~~~~~~ 316 (432)
.++.+..+||+|++++ |+++..+||||||++++|||+| |++|||+|+.+... ||+..++.. .
T Consensus 419 -----~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~-~ 484 (666)
T 3o8b_A 419 -----LGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET-T 484 (666)
T ss_dssp -----TTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE-E
T ss_pred -----CCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccc-c
Confidence 3778999999999875 3456669999999999999997 99999999887654 445555433 3
Q ss_pred EeeecHhhHHHhhcccCCCCCCeEEEecCccchhh
Q 014006 317 VVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (432)
Q Consensus 317 ~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~~~~ 351 (432)
..|.|.++|+||+||+||.++|. |.|+++.+...
T Consensus 485 ~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 485 TVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEECBHHHHHHHHTTBCSSSCEE-EEESCCCCBCS
T ss_pred cCcCCHHHHHHHhccCCCCCCCE-EEEEecchhhc
Confidence 57999999999999999988899 99998876543
No 21
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=6.6e-43 Score=354.15 Aligned_cols=318 Identities=18% Similarity=0.186 Sum_probs=221.4
Q ss_pred hhhhHHHHHHHHh--cCCEEEEEcCCCCCHH-HHHHHHHhhcC-----CCCCcEEEecccchhhhHHHHHHHHHHhCC--
Q 014006 6 ILQYEETIVETVE--QNPVVVVIGETGSGKS-TQLSQILHRHG-----YTKSGIIGVTQPRRVAAVSVARRVAQELGV-- 75 (432)
Q Consensus 6 ~~~~q~~i~~~i~--~~~~~ii~apTGsGKT-~~~~~~~~~~~-----~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~-- 75 (432)
.+++|.++++.+. +++++++.|||||||| +++.+++.... ...+.++++++|+++|+.|+++.+.+....
T Consensus 44 ~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~ 123 (579)
T 3sqw_A 44 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 123 (579)
T ss_dssp CCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcc
Confidence 6789999999998 7889999999999999 33333333221 122458999999999999999998776421
Q ss_pred --ccC---Ceeeeeeeec---ccCCCCceEEEcCHHHHHHHHhcC--CCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 76 --RLG---EEVGYAIRFE---DRTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 76 --~~~---~~~g~~~~~~---~~~~~~~~i~v~T~~~l~~~l~~~--~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
... ...|...... ......++|+|+||+++.+.+... ..+.++++||||||| ++.+.++... +..+..
T Consensus 124 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah-~l~~~gf~~~-~~~i~~ 201 (579)
T 3sqw_A 124 GLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD-RLLEIGFRDD-LETISG 201 (579)
T ss_dssp GGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH-HHTSTTTHHH-HHHHHH
T ss_pred cccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChH-HhhcCCCHHH-HHHHHH
Confidence 111 1112110000 001235899999999999887543 267889999999999 4555444332 222222
Q ss_pred hh-------cCCcEEEEEecccChHH--H-HhhccCCCeeecCC-------CCCceeEEeC-CCCCcchHHHHHHHHHHH
Q 014006 146 LR-------ASKLKILITSATLDGEK--V-SKFFSNCPTLNVPG-------KLYPVEILHS-KERPTSYLESALKTAIDI 207 (432)
Q Consensus 146 ~~-------~~~~~ii~~SAT~~~~~--~-~~~~~~~~~i~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 207 (432)
.. +.+.|+++||||++... + ..++.....+.+.. ....+...+. ...........+..+...
T Consensus 202 ~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 281 (579)
T 3sqw_A 202 ILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQ 281 (579)
T ss_dssp HHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHH
T ss_pred HhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHH
Confidence 21 22579999999998643 2 33443333332211 0111111111 111122222333333333
Q ss_pred Hh-cCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccc
Q 014006 208 HV-REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETS 286 (432)
Q Consensus 208 ~~-~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~G 286 (432)
.. ...++++||||+|++.++.++..|.+... .++.+..+||+|++++|.++++.|++|+.+|||||+++++|
T Consensus 282 ~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-------~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~G 354 (579)
T 3sqw_A 282 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARG 354 (579)
T ss_dssp HHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSS
T ss_pred HhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-------CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcC
Confidence 32 35567999999999999999999988632 26779999999999999999999999999999999999999
Q ss_pred cccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchh
Q 014006 287 LTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (432)
Q Consensus 287 idi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (432)
||+|++++||++|.|. |..+|+||+|||||. ++|.|+.++++.+..
T Consensus 355 iDip~v~~VI~~~~p~------------------s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~ 401 (579)
T 3sqw_A 355 MDFPNVHEVLQIGVPS------------------ELANYIHRIGRTARSGKEGSSVLFICKDELP 401 (579)
T ss_dssp CCCTTCCEEEEESCCS------------------STTHHHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred CCcccCCEEEEcCCCC------------------CHHHhhhhccccccCCCCceEEEEEcccHHH
Confidence 9999999999988765 667999999999999 689999999877643
No 22
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.9e-44 Score=347.83 Aligned_cols=314 Identities=18% Similarity=0.238 Sum_probs=118.4
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhc-CCCCCcEEEecccchhhhHHHHHHHHHHhC---CccCC
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELG---VRLGE 79 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~-~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~---~~~~~ 79 (432)
..+++|.++++.+.+++++++.+||||||| +++.+++... ....+.++++++|+++|+.|+++.+.+... ..+..
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 122 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHA 122 (394)
T ss_dssp SCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEE
Confidence 467899999999999999999999999999 3333344333 223466899999999999999998876643 22222
Q ss_pred eeeeeeeecc-cCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 80 EVGYAIRFED-RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 80 ~~g~~~~~~~-~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
..|....... ......+|+++||+++.+.+.... .+.++++||+|||| +..+.++... +..+....+...|++++|
T Consensus 123 ~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah-~~~~~~~~~~-~~~~~~~~~~~~~~i~~S 200 (394)
T 1fuu_A 123 CIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD-EMLSSGFKEQ-IYQIFTLLPPTTQVVLLS 200 (394)
T ss_dssp ECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH-HHHHTTCHHH-HHHHHHHSCTTCEEEEEC
T ss_pred EeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChH-HhhCCCcHHH-HHHHHHhCCCCceEEEEE
Confidence 2231111110 111257899999999998886544 67899999999999 3333333333 455555555568999999
Q ss_pred cccChHH---HHhhccCCCeeecCCCCCce---eEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHH
Q 014006 158 ATLDGEK---VSKFFSNCPTLNVPGKLYPV---EILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVS 231 (432)
Q Consensus 158 AT~~~~~---~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~ 231 (432)
||++... ...++.++..+......... ...+.......+ ....+..+......+++||||+++++++.+++
T Consensus 201 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~ 277 (394)
T 1fuu_A 201 ATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEY---KYECLTDLYDSISVTQAVIFCNTRRKVEELTT 277 (394)
T ss_dssp SSCCHHHHHHHHHHCCSCEEEEECC-------------------------------------------------------
T ss_pred EecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhh---HHHHHHHHHhcCCCCcEEEEECCHHHHHHHHH
Confidence 9998643 45566554444443322111 111111111111 12222333333456799999999999999999
Q ss_pred HHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCC
Q 014006 232 KLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSG 311 (432)
Q Consensus 232 ~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~ 311 (432)
.|.+. ++.+..+||+++.++|.++++.|++|..+|||||+++++|+|+|++++||++|.|.
T Consensus 278 ~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~--------- 338 (394)
T 1fuu_A 278 KLRND----------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA--------- 338 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHc----------CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCC---------
Confidence 99873 77889999999999999999999999999999999999999999999999988644
Q ss_pred CccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 312 MYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 312 ~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
|..+|+||+||+||. ++|.|+.++++.+...
T Consensus 339 ---------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 370 (394)
T 1fuu_A 339 ---------NKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 370 (394)
T ss_dssp -----------------------------------------
T ss_pred ---------CHHHHHHHcCcccCCCCCceEEEEEchhHHHH
Confidence 677999999999999 7899999998887654
No 23
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-43 Score=353.00 Aligned_cols=316 Identities=18% Similarity=0.204 Sum_probs=205.6
Q ss_pred hhhhHHHHHHHHhcC--CEEEEEcCCCCCHHH-HHHHHHhhcCC-CCCcEEEecccchhhhHHHHHHHHHHhCCcc-CCe
Q 014006 6 ILQYEETIVETVEQN--PVVVVIGETGSGKST-QLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELGVRL-GEE 80 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~--~~~ii~apTGsGKT~-~~~~~~~~~~~-~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~-~~~ 80 (432)
.+++|.++++.+.++ +++++.||||||||. ++.+++..... ..+.++++++|+++|+.|+++++.+.++... ...
T Consensus 142 p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~ 221 (508)
T 3fho_A 142 XXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTA 221 (508)
T ss_dssp CCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEE
T ss_pred cHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEE
Confidence 467899999999987 999999999999993 34444443322 3356899999999999999999877764321 112
Q ss_pred eeeeeeecccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 81 ~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
.+.............+|+++||+++.+.+.... .+.++++||+||+|+ ..+.......+..+....+.+.|++++|||
T Consensus 222 ~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~-~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT 300 (508)
T 3fho_A 222 FGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADN-MLDQQGLGDQSMRIKHLLPRNTQIVLFSAT 300 (508)
T ss_dssp C----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHH-HTTC--CHHHHHHHHHHSCTTCEEEEEESC
T ss_pred EEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhh-hcccCCcHHHHHHHHHhCCcCCeEEEEeCC
Confidence 222222222233468999999999998886654 688999999999994 433222333355666666666999999999
Q ss_pred cChH--H-HHhhccCCCeeecCCCCCcee---EEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHH
Q 014006 160 LDGE--K-VSKFFSNCPTLNVPGKLYPVE---ILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKL 233 (432)
Q Consensus 160 ~~~~--~-~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L 233 (432)
++.. . ...++.+...+.......... ..+...... ......+..+......+++||||+++++++.++..|
T Consensus 301 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L 377 (508)
T 3fho_A 301 FSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSE---EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRM 377 (508)
T ss_dssp CSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--C---HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHH
T ss_pred CCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCch---HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHH
Confidence 9753 3 334444444444433322211 111111111 223344445555556789999999999999999999
Q ss_pred HHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCc
Q 014006 234 EDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMY 313 (432)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~ 313 (432)
.+ .+..+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++++||++|.|....
T Consensus 378 ~~----------~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~-------- 439 (508)
T 3fho_A 378 TA----------DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQA-------- 439 (508)
T ss_dssp TT----------TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC----------
T ss_pred Hh----------CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCccc--------
Confidence 76 367788999999999999999999999999999999999999999999999988764221
Q ss_pred cceEeeecHhhHHHhhcccCCC-CCCeEEEecCcc
Q 014006 314 SLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (432)
Q Consensus 314 ~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~ 347 (432)
...|..+|+||+||+||. ++|.|+.++++.
T Consensus 440 ----~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 440 ----GRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp -------CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred ----CCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 124778999999999999 689999999754
No 24
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-42 Score=365.18 Aligned_cols=324 Identities=16% Similarity=0.195 Sum_probs=232.3
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHH-HHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeee
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLS-QILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVG 82 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~-~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g 82 (432)
++++++|.++++.+.+|++++++||||||||..+. +++... ..+.++++++|+++|+.|+++.+.+.++ .++...|
T Consensus 85 f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l--~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-~vglltG 161 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL--KNKQRVIYTSPIKALSNQKYRELLAEFG-DVGLMTG 161 (1010)
T ss_dssp SCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHHHHHHHHHS-CEEEECS
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHh--ccCCeEEEECChHHHHHHHHHHHHHHhC-CEEEEeC
Confidence 45899999999999999999999999999994332 222222 3467999999999999999999988887 4554444
Q ss_pred eeeeecccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccC
Q 014006 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (432)
Q Consensus 83 ~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~ 161 (432)
+.......+|+|+||++|.+++.... .+.++++|||||+| +..+.++... +..++...+.+.|+|+||||++
T Consensus 162 -----d~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH-~l~d~~rg~~-~e~il~~l~~~~~il~LSATi~ 234 (1010)
T 2xgj_A 162 -----DITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVV-WEETIILLPDKVRYVFLSATIP 234 (1010)
T ss_dssp -----SCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGG-GGGCTTTHHH-HHHHHHHSCTTCEEEEEECCCT
T ss_pred -----CCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechh-hhcccchhHH-HHHHHHhcCCCCeEEEEcCCCC
Confidence 22234567899999999998886554 78899999999999 5555433222 3444455556799999999995
Q ss_pred h-HHHHhhcc-----CCCeeecCCCCCceeEEeCCCC----------Ccc-----hH-----------------------
Q 014006 162 G-EKVSKFFS-----NCPTLNVPGKLYPVEILHSKER----------PTS-----YL----------------------- 197 (432)
Q Consensus 162 ~-~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~----------~~~-----~~----------------------- 197 (432)
. ..++.|+. ...++....++.|+..++.... ... +.
T Consensus 235 n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~ 314 (1010)
T 2xgj_A 235 NAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKK 314 (1010)
T ss_dssp THHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----------------
T ss_pred CHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccccccccc
Confidence 4 55777764 2344555566666554432110 000 00
Q ss_pred -------------HHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHh------------------hccCCC--
Q 014006 198 -------------ESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIR------------------SLDEGS-- 244 (432)
Q Consensus 198 -------------~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~------------------~~~~~~-- 244 (432)
...+..+.........+++||||+|++.|+.++..|..... .+...+
T Consensus 315 ~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~ 394 (1010)
T 2xgj_A 315 GQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRE 394 (1010)
T ss_dssp --------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTT
T ss_pred ccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhc
Confidence 11122233333344556999999999999999998864100 000000
Q ss_pred ---------CCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccc
Q 014006 245 ---------CMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSL 315 (432)
Q Consensus 245 ---------~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~ 315 (432)
....++.+|||+|++++|..+++.|++|.++|||||+++++|||+|++++||+. ...||..
T Consensus 395 l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~------ 464 (1010)
T 2xgj_A 395 LPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQ------ 464 (1010)
T ss_dssp CHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSS------
T ss_pred chhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccCCc------
Confidence 001248899999999999999999999999999999999999999999999982 1123321
Q ss_pred eEeeecHhhHHHhhcccCCCC---CCeEEEecCcc
Q 014006 316 DVVQISKVQANQRVGRAGRTR---PGKCYRLYPST 347 (432)
Q Consensus 316 ~~~~~s~~~~~qr~GRaGR~~---~G~~~~l~~~~ 347 (432)
...|.|..+|+||+|||||.+ .|.||.++++.
T Consensus 465 ~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 465 QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp CEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred CCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 134779999999999999995 59999999765
No 25
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.4e-43 Score=372.96 Aligned_cols=324 Identities=16% Similarity=0.197 Sum_probs=232.4
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHH-HHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHh-CCccCCe
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL-GVRLGEE 80 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~-~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~-~~~~~~~ 80 (432)
.++++++|.++++.+.+|+++++.||||||||+. ..++.... ..+.+++|++|+++|+.|+++++.+.+ +..++..
T Consensus 37 ~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~--~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l 114 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH--RNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLI 114 (997)
T ss_dssp SSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH--HTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 3568999999999999999999999999999943 22222221 346789999999999999999998765 3444444
Q ss_pred eeeeeeecccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 81 ~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
.| +.......+|+|+||++|.+.+.... .+.++++||||||| +..+.++... +..++...+.+.|+|++|||
T Consensus 115 ~G-----~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~-~e~ii~~l~~~v~iIlLSAT 187 (997)
T 4a4z_A 115 TG-----DVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVV-WEEVIIMLPQHVKFILLSAT 187 (997)
T ss_dssp CS-----SCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCC-HHHHHHHSCTTCEEEEEECC
T ss_pred eC-----CCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcc-cccccchHHH-HHHHHHhcccCCCEEEEcCC
Confidence 44 22334568999999999999886654 67899999999999 5555544333 33444445556999999999
Q ss_pred c-ChHHHHhhcc-----CCCeeecCCCCCceeEEeCCCC--------Ccch-----------------------------
Q 014006 160 L-DGEKVSKFFS-----NCPTLNVPGKLYPVEILHSKER--------PTSY----------------------------- 196 (432)
Q Consensus 160 ~-~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~--------~~~~----------------------------- 196 (432)
+ +...+.+|++ ...++....++.|+..+..... ...+
T Consensus 188 ~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 267 (997)
T 4a4z_A 188 VPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRG 267 (997)
T ss_dssp CTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----------------
T ss_pred CCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccc
Confidence 9 4567888885 2335566667777664432100 0000
Q ss_pred ----------------------------------------------------HHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 014006 197 ----------------------------------------------------LESALKTAIDIHVREPEGDVLIFMTGQD 224 (432)
Q Consensus 197 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~lvF~~t~~ 224 (432)
....+..+.........+++||||+|++
T Consensus 268 ~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~ 347 (997)
T 4a4z_A 268 GSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKK 347 (997)
T ss_dssp -------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHH
Confidence 0011233444444556689999999999
Q ss_pred HHHHHHHHHHHHHh------------------hccCC-----------CCCCeEEEEecCCCCHHHHhccCCCCCCCccE
Q 014006 225 DIEKLVSKLEDKIR------------------SLDEG-----------SCMDAVILPLHGSLPPEMQVRVFSPPPPNCRR 275 (432)
Q Consensus 225 ~~~~~~~~L~~~~~------------------~~~~~-----------~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ 275 (432)
+|+.++..|.+... .+... .....++.++||+|++.+|..+++.|++|.++
T Consensus 348 ~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~k 427 (997)
T 4a4z_A 348 RCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIK 427 (997)
T ss_dssp HHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCc
Confidence 99999998854100 00000 00122478999999999999999999999999
Q ss_pred EEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC---CCeEEEecC
Q 014006 276 FIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYP 345 (432)
Q Consensus 276 ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~---~G~~~~l~~ 345 (432)
|||||+++++|||+|++.+|+ ++.++ ||.. ...|+|..+|+||+|||||.+ .|.||.++.
T Consensus 428 VLvAT~~~a~GIDiP~~~VVi-~~~~k---~dg~------~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 428 VLFATETFAMGLNLPTRTVIF-SSIRK---HDGN------GLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp EEEECTHHHHSCCCCCSEEEE-SCSEE---EETT------EEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred EEEEchHhhCCCCCCCceEEE-ecccc---ccCc------cCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 999999999999999955554 55544 4432 235889999999999999974 799999984
No 26
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.5e-42 Score=345.65 Aligned_cols=302 Identities=17% Similarity=0.198 Sum_probs=216.4
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeee
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~ 83 (432)
.+++|.++++.+.+|+++++.+||||||| +++|.+.. .+.++++.|+++|+.|+.+.+.+ ++.......|.
T Consensus 26 ~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~aL~~q~~~~l~~-~gi~~~~l~~~ 98 (523)
T 1oyw_A 26 FRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLISLMKDQVDQLQA-NGVAAACLNST 98 (523)
T ss_dssp CCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCHHHHHHHHHHHHH-TTCCEEEECTT
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChHHHHHHHHHHHHH-cCCcEEEEeCC
Confidence 36899999999999999999999999999 34554422 35789999999999999998854 45443332221
Q ss_pred eeeec------ccCCCCceEEEcCHHHHHHHHh-cCCCCCCCcEEEEeCCCcCCCCH-HH--HHHHHHHHHhhhcCCcEE
Q 014006 84 AIRFE------DRTSERTLIKYLTDGVLLREIL-SNPDLSPYSVIILDEAHERSLNT-DI--LLGLVKRLVNLRASKLKI 153 (432)
Q Consensus 84 ~~~~~------~~~~~~~~i~v~T~~~l~~~l~-~~~~l~~~~~vViDE~h~~~~~~-~~--~~~~l~~~~~~~~~~~~i 153 (432)
....+ .......+|+|+||+++..... ......++++|||||||+..-+. ++ ....+..+....+. .++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~-~~~ 177 (523)
T 1oyw_A 99 QTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPT-LPF 177 (523)
T ss_dssp SCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTT-SCE
T ss_pred CCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCC-CCE
Confidence 11111 1112458999999999852211 11134789999999999632111 11 11224445555554 899
Q ss_pred EEEecccChHH---HHhhcc-CCCeeecCCC-CCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHH
Q 014006 154 LITSATLDGEK---VSKFFS-NCPTLNVPGK-LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEK 228 (432)
Q Consensus 154 i~~SAT~~~~~---~~~~~~-~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~ 228 (432)
+++|||++... +.++++ ..+.+..... ...+..... ...+.. ..+........++++||||+|+++++.
T Consensus 178 i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~--~~~~~~----~~l~~~l~~~~~~~~IVf~~sr~~~e~ 251 (523)
T 1oyw_A 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLM--EKFKPL----DQLMRYVQEQRGKSGIIYCNSRAKVED 251 (523)
T ss_dssp EEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEE--ECSSHH----HHHHHHHHHTTTCCEEEECSSHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEE--eCCCHH----HHHHHHHHhcCCCcEEEEeCCHHHHHH
Confidence 99999998754 444453 2333333221 112221111 112222 233333334566799999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecC
Q 014006 229 LVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNP 308 (432)
Q Consensus 229 ~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~ 308 (432)
+++.|.+ .++.+..+||+|+.++|.++++.|++|+.+|||||+++++|||+|+|++||++|.|+
T Consensus 252 l~~~L~~----------~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~------ 315 (523)
T 1oyw_A 252 TAARLQS----------KGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPR------ 315 (523)
T ss_dssp HHHHHHH----------TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCS------
T ss_pred HHHHHHH----------CCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCC------
Confidence 9999987 377899999999999999999999999999999999999999999999999998765
Q ss_pred CCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccch
Q 014006 309 SSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY 349 (432)
Q Consensus 309 ~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~ 349 (432)
|.++|+||+|||||. .+|.|+.++++.+.
T Consensus 316 ------------s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~ 345 (523)
T 1oyw_A 316 ------------NIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (523)
T ss_dssp ------------SHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred ------------CHHHHHHHhccccCCCCCceEEEEeCHHHH
Confidence 888999999999999 68999999987764
No 27
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.3e-42 Score=327.25 Aligned_cols=297 Identities=21% Similarity=0.240 Sum_probs=217.8
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhC---CccCCee
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG---VRLGEEV 81 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~---~~~~~~~ 81 (432)
..+++|.++++.+.+++++++.+|||||||..+...+... +.++++++|+++|+.|+++++.+... ..++...
T Consensus 16 ~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 91 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVY 91 (337)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEEC
T ss_pred CCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEE
Confidence 4689999999999999999999999999994333232222 56789999999999999999876542 2222222
Q ss_pred eeeeeec-ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 82 GYAIRFE-DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 82 g~~~~~~-~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
|...... .......+|+++||+++.+.+.... .+.++++||+|||| +..+.++.. .+..+....+...+++++|||
T Consensus 92 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah-~~~~~~~~~-~~~~~~~~~~~~~~~~~~SAT 169 (337)
T 2z0m_A 92 GGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEAD-LMFEMGFID-DIKIILAQTSNRKITGLFSAT 169 (337)
T ss_dssp TTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHH-HHHHTTCHH-HHHHHHHHCTTCSEEEEEESC
T ss_pred CCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChH-HhhccccHH-HHHHHHhhCCcccEEEEEeCc
Confidence 2111100 0111348999999999998876544 67889999999999 333333333 355555656666899999999
Q ss_pred cChH---HHHhhccCCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHH
Q 014006 160 LDGE---KVSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDK 236 (432)
Q Consensus 160 ~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~ 236 (432)
++.. .+..++.+...+........+...+....... ... ........++++||||+++++++.+++.|.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~- 242 (337)
T 2z0m_A 170 IPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDDW--RSK----VQALRENKDKGVIVFVRTRNRVAKLVRLFDN- 242 (337)
T ss_dssp CCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSSS--HHH----HHHHHTCCCSSEEEECSCHHHHHHHHTTCTT-
T ss_pred CCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChHH--HHH----HHHHHhCCCCcEEEEEcCHHHHHHHHHHhhh-
Confidence 9875 35666665554433322223333222222111 111 1233346678999999999999998887742
Q ss_pred HhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccce
Q 014006 237 IRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLD 316 (432)
Q Consensus 237 ~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~ 316 (432)
+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 243 -------------~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~-------------- 295 (337)
T 2z0m_A 243 -------------AIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ-------------- 295 (337)
T ss_dssp -------------EEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS--------------
T ss_pred -------------hhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC--------------
Confidence 67799999999999999999999999999999999999999999999988654
Q ss_pred EeeecHhhHHHhhcccCCC-CCCeEEEecC
Q 014006 317 VVQISKVQANQRVGRAGRT-RPGKCYRLYP 345 (432)
Q Consensus 317 ~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~ 345 (432)
|..+|+||+||+||. ++|.|+.++.
T Consensus 296 ----s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 296 ----DLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp ----SHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred ----CHHHhhHhcCccccCCCCceEEEEEe
Confidence 778999999999999 7899999987
No 28
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.2e-41 Score=342.39 Aligned_cols=330 Identities=15% Similarity=0.195 Sum_probs=175.9
Q ss_pred CCCCchhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCCCC---CcEEEecccchhhhHHHHHHHHHHh---
Q 014006 1 MANLPILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTK---SGIIGVTQPRRVAAVSVARRVAQEL--- 73 (432)
Q Consensus 1 ~~~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~~~---~~~vl~~~P~~~l~~q~~~~~~~~~--- 73 (432)
|..+..+++|.++++.+.+++++++.+||||||| .++.+++....... +.++++++|+++|+.|+.+.+.+.+
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 4567889999999999999999999999999999 33333333322222 6789999999999999999987765
Q ss_pred CCccCCeeeeeeeecc--cCCCCceEEEcCHHHHHHHHhcCC--CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhh--
Q 014006 74 GVRLGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-- 147 (432)
Q Consensus 74 ~~~~~~~~g~~~~~~~--~~~~~~~i~v~T~~~l~~~l~~~~--~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~-- 147 (432)
+..++...|....... ......+|+|+||+++.+.+.... .+.++++||+|||| +..+.+....++..+....
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah-~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECH-NTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGG-GCSTTSHHHHHHHHHHHHHHC
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCc-ccCCcchHHHHHHHHHHhhhc
Confidence 4555544453211111 112457999999999999886654 58899999999999 4554444554444444331
Q ss_pred --cCCcEEEEEecccChH---HHH----------hhccCCCeeecCCC---------CCceeEE-eCCC-CCcc------
Q 014006 148 --ASKLKILITSATLDGE---KVS----------KFFSNCPTLNVPGK---------LYPVEIL-HSKE-RPTS------ 195 (432)
Q Consensus 148 --~~~~~ii~~SAT~~~~---~~~----------~~~~~~~~i~~~~~---------~~~~~~~-~~~~-~~~~------ 195 (432)
....++++||||++.. .+. ..++ ...+..... ..+.... .... ....
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLD-IQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 240 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHT-CSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcC-CeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHH
Confidence 2348999999999431 111 2221 111111110 0000000 0000 0000
Q ss_pred ----------------------------------hH--------------------------------------------
Q 014006 196 ----------------------------------YL-------------------------------------------- 197 (432)
Q Consensus 196 ----------------------------------~~-------------------------------------------- 197 (432)
+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (556)
T 4a2p_A 241 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 320 (556)
T ss_dssp HHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00
Q ss_pred --------------------------------------------------HHHHHHHH----HHHhcCCCCCEEEEeCCH
Q 014006 198 --------------------------------------------------ESALKTAI----DIHVREPEGDVLIFMTGQ 223 (432)
Q Consensus 198 --------------------------------------------------~~~~~~~~----~~~~~~~~~~~lvF~~t~ 223 (432)
......+. .......++++||||+++
T Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~ 400 (556)
T 4a2p_A 321 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 400 (556)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccH
Confidence 00111111 111225678999999999
Q ss_pred HHHHHHHHHHHHHH--hhccCCCCCCeEEEEecCCCCHHHHhccCCCCCC-CccEEEEeecCcccccccCCeEEEEeCCc
Q 014006 224 DDIEKLVSKLEDKI--RSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVIDCGY 300 (432)
Q Consensus 224 ~~~~~~~~~L~~~~--~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~-g~~~ilvaT~~~~~Gidi~~v~~VI~~~~ 300 (432)
+.++.+++.|.+.. .........+.....+||+|++++|.+++++|++ |..+|||||+++++|+|+|++++||++|.
T Consensus 401 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 401 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp HHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETC
T ss_pred HHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC
Confidence 99999999997631 0111111235556677899999999999999999 99999999999999999999999999887
Q ss_pred ccceeecCCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEecCccchhh
Q 014006 301 VKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (432)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~~~~ 351 (432)
|. |..+|+||+|| ||.++|.||.|+++.+.+.
T Consensus 481 p~------------------s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 481 SG------------------NVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 512 (556)
T ss_dssp CS------------------CHHHHHHC---------CCEEEEESCHHHHH
T ss_pred CC------------------CHHHHHHhcCC-CCCCCceEEEEEeCcchHH
Confidence 54 77899999999 9999999999998887654
No 29
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=9.7e-42 Score=353.79 Aligned_cols=320 Identities=16% Similarity=0.181 Sum_probs=181.2
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHH-HHHhhc---CCCCCcEEEecccchhhhHHHHHHHHHHh---CCc
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLS-QILHRH---GYTKSGIIGVTQPRRVAAVSVARRVAQEL---GVR 76 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~-~~~~~~---~~~~~~~vl~~~P~~~l~~q~~~~~~~~~---~~~ 76 (432)
...+++|.++++.+.+|+++++++|||||||..+. +++... ....+.++++++|+++|+.|+.+.+.+.+ +..
T Consensus 12 ~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 91 (696)
T 2ykg_A 12 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYR 91 (696)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCC
T ss_pred CCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCce
Confidence 45689999999999999999999999999994332 222221 11223689999999999999999987776 444
Q ss_pred cCCeeeeeeeecc--cCCCCceEEEcCHHHHHHHHhcCC--CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhh-----h
Q 014006 77 LGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNL-----R 147 (432)
Q Consensus 77 ~~~~~g~~~~~~~--~~~~~~~i~v~T~~~l~~~l~~~~--~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~-----~ 147 (432)
++...|....... ......+|+|+||++|.+.+.... .+.++++|||||||+.. .......++...+.. .
T Consensus 92 v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~-~~~~~~~i~~~~l~~~~~~~~ 170 (696)
T 2ykg_A 92 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTS-KQHPYNMIMFNYLDQKLGGSS 170 (696)
T ss_dssp EEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCS-TTCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCccc-CcccHHHHHHHHHHHhhcccC
Confidence 4444442211110 011458999999999999987653 57889999999999533 332333333333222 1
Q ss_pred cCCcEEEEEecccC-------hHH---HHhhcc--CCCeeecCCCC---------CceeEE-------------------
Q 014006 148 ASKLKILITSATLD-------GEK---VSKFFS--NCPTLNVPGKL---------YPVEIL------------------- 187 (432)
Q Consensus 148 ~~~~~ii~~SAT~~-------~~~---~~~~~~--~~~~i~~~~~~---------~~~~~~------------------- 187 (432)
+...++++||||+. .+. +..++. +...+...... .|....
T Consensus 171 ~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~ 250 (696)
T 2ykg_A 171 GPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 250 (696)
T ss_dssp SCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHH
Confidence 24589999999996 222 211111 11111100000 000000
Q ss_pred ---------eCC--------------------------------------------------------------------
Q 014006 188 ---------HSK-------------------------------------------------------------------- 190 (432)
Q Consensus 188 ---------~~~-------------------------------------------------------------------- 190 (432)
+..
T Consensus 251 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~ 330 (696)
T 2ykg_A 251 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 330 (696)
T ss_dssp HHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhh
Confidence 000
Q ss_pred ----------------CCCcch-------------------------HHHHHHHHHHHHh----cCCCCCEEEEeCCHHH
Q 014006 191 ----------------ERPTSY-------------------------LESALKTAIDIHV----REPEGDVLIFMTGQDD 225 (432)
Q Consensus 191 ----------------~~~~~~-------------------------~~~~~~~~~~~~~----~~~~~~~lvF~~t~~~ 225 (432)
...... .......+..+.. ...++++||||++++.
T Consensus 331 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~ 410 (696)
T 2ykg_A 331 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 410 (696)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHH
Confidence 000000 0001112222222 2356799999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCeEEEEe--------cCCCCHHHHhccCCCCCC-CccEEEEeecCcccccccCCeEEEE
Q 014006 226 IEKLVSKLEDKIRSLDEGSCMDAVILPL--------HGSLPPEMQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVI 296 (432)
Q Consensus 226 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~--------h~~l~~~~r~~~~~~f~~-g~~~ilvaT~~~~~Gidi~~v~~VI 296 (432)
++.+++.|..... ...+.+..+ ||+|++++|.+++++|++ |..+|||||+++++|||+|++++||
T Consensus 411 ~~~l~~~L~~~~~------~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI 484 (696)
T 2ykg_A 411 VDALKNWIEGNPK------LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 484 (696)
T ss_dssp HHHHHHHHHHCTT------CCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEE
T ss_pred HHHHHHHHHhCCC------ccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEE
Confidence 9999999987410 012556666 679999999999999998 9999999999999999999999999
Q ss_pred eCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEecCccch
Q 014006 297 DCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVY 349 (432)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~~ 349 (432)
++|+|. |..+|+||+|| ||.++|.|+.|+++.+.
T Consensus 485 ~~d~p~------------------s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 485 LYEYVG------------------NVIKMIQTRGR-GRARGSKCFLLTSNAGV 518 (696)
T ss_dssp EESCC--------------------CCCC----------CCCEEEEEESCHHH
T ss_pred EeCCCC------------------CHHHHHHhhcc-CcCCCceEEEEecCCCH
Confidence 988765 55688999999 99999999999988776
No 30
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.6e-41 Score=332.68 Aligned_cols=290 Identities=17% Similarity=0.230 Sum_probs=208.5
Q ss_pred HHHHHhcCC-EEEEEcCCCCCHHH-HHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeec-c
Q 014006 13 IVETVEQNP-VVVVIGETGSGKST-QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFE-D 89 (432)
Q Consensus 13 i~~~i~~~~-~~ii~apTGsGKT~-~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~-~ 89 (432)
+++.+.+++ +++++||||||||+ ++.+++.... ..+.++++++|+++|+.|+++.+. +..+++..... .
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~-~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~ 82 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREAL-LRRLRTLILAPTRVVAAEMEEALR-------GLPIRYQTPAVKS 82 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHTT-------TSCEEECCTTCSC
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHH-hcCCcEEEECCCHHHHHHHHHHhc-------Cceeeeeeccccc
Confidence 455555554 55999999999994 4555544322 245789999999999999988763 22333322222 1
Q ss_pred cCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHH--HHHHHHHHHhhhcCCcEEEEEecccChHHHHh
Q 014006 90 RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI--LLGLVKRLVNLRASKLKILITSATLDGEKVSK 167 (432)
Q Consensus 90 ~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~--~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~ 167 (432)
.......+.++|++.+.+.+.....+.++++|||||||+. +... ....+.. ...+.+.|+++||||++.+....
T Consensus 83 ~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~--~~~~~~~~~~~~~--~~~~~~~~~i~~SAT~~~~~~~~ 158 (451)
T 2jlq_A 83 DHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT--DPCSVAARGYIST--RVEMGEAAAIFMTATPPGSTDPF 158 (451)
T ss_dssp CCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCC--SHHHHHHHHHHHH--HHHTTSCEEEEECSSCTTCCCSS
T ss_pred cCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccC--CcchHHHHHHHHH--hhcCCCceEEEEccCCCccchhh
Confidence 2235568899999999999988888999999999999943 4333 2222211 12233589999999998755444
Q ss_pred hccCCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCC
Q 014006 168 FFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMD 247 (432)
Q Consensus 168 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~ 247 (432)
+..+.+.+.+. ...|... +. ... ..+ ....+++||||+|+++|+.++..|.+ .+
T Consensus 159 ~~~~~~~~~~~-~~~p~~~-~~--~~~-------~~l-----~~~~~~~lVF~~s~~~a~~l~~~L~~----------~g 212 (451)
T 2jlq_A 159 PQSNSPIEDIE-REIPERS-WN--TGF-------DWI-----TDYQGKTVWFVPSIKAGNDIANCLRK----------SG 212 (451)
T ss_dssp CCCSSCEEEEE-CCCCSSC-CS--SSC-------HHH-----HHCCSCEEEECSSHHHHHHHHHHHHT----------TT
T ss_pred hcCCCceEecC-ccCCchh-hH--HHH-------HHH-----HhCCCCEEEEcCCHHHHHHHHHHHHH----------cC
Confidence 44445544433 2222111 10 000 111 12367999999999999999999976 36
Q ss_pred eEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceE---eeecHhh
Q 014006 248 AVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDV---VQISKVQ 324 (432)
Q Consensus 248 ~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~---~~~s~~~ 324 (432)
+.+..+||++ +.++++.|++|+.+|||||+++++|+|+|+ ++|||+|+.+...|| ..+...+.. .|.|.++
T Consensus 213 ~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~ 286 (451)
T 2jlq_A 213 KRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPAS 286 (451)
T ss_dssp CCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHH
T ss_pred CeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHHH
Confidence 7788999865 457899999999999999999999999999 999999999988887 555555554 8999999
Q ss_pred HHHhhcccCCCC--CCeEEEecCc
Q 014006 325 ANQRVGRAGRTR--PGKCYRLYPS 346 (432)
Q Consensus 325 ~~qr~GRaGR~~--~G~~~~l~~~ 346 (432)
|+||+|||||.+ +|.||.++..
T Consensus 287 y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 287 AAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSC
T ss_pred HHHhccccCCCCCCCccEEEEeCC
Confidence 999999999994 8999988743
No 31
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=9.8e-41 Score=336.74 Aligned_cols=297 Identities=16% Similarity=0.230 Sum_probs=216.5
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCee
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~ 81 (432)
.+|+|++ + ++.+.++++++++|||||||| .++.+++.... ..+.++++++|+++|+.|+++.+. + ..+
T Consensus 172 ~lpiq~~--~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~-~~~~~vLvl~PtreLa~Qi~~~l~---~----~~v 240 (618)
T 2whx_A 172 GEPDYEV--D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREAL-KRRLRTLILAPTRVVAAEMEEALR---G----LPI 240 (618)
T ss_dssp CCCCCCC--C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHTT---T----SCE
T ss_pred CCCcccc--C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEcChHHHHHHHHHHhc---C----Cce
Confidence 4888876 2 889999999999999999999 44455554332 245689999999999999998764 2 233
Q ss_pred eeeeee-cccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecc
Q 014006 82 GYAIRF-EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSAT 159 (432)
Q Consensus 82 g~~~~~-~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~-~~~~ii~~SAT 159 (432)
++.... .....+...+.++|.+.+.+.+.....+.++++||+||||++ +.++... +..+....+ .+.|+++||||
T Consensus 241 ~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~--~~~~~~~-~~~i~~~l~~~~~q~il~SAT 317 (618)
T 2whx_A 241 RYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT--DPCSVAA-RGYISTRVEMGEAAAIFMTAT 317 (618)
T ss_dssp EECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC--SHHHHHH-HHHHHHHHHHTSCEEEEECSS
T ss_pred eEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC--CccHHHH-HHHHHHHhcccCccEEEEECC
Confidence 332221 223345677888999999988888888999999999999943 5554333 333333322 35899999999
Q ss_pred cChHHHHhhcc-CCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHh
Q 014006 160 LDGEKVSKFFS-NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIR 238 (432)
Q Consensus 160 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~ 238 (432)
++.. ...+.. +...+.+... ++. ..... .+..+. ...+++||||+|+++|+.+++.|.+.
T Consensus 318 ~~~~-~~~~~~~~~~~~~v~~~-~~~------~~~~~----ll~~l~-----~~~~~~LVF~~s~~~a~~l~~~L~~~-- 378 (618)
T 2whx_A 318 PPGS-TDPFPQSNSPIEDIERE-IPE------RSWNT----GFDWIT-----DYQGKTVWFVPSIKAGNDIANCLRKS-- 378 (618)
T ss_dssp CTTC-CCSSCCCSSCEEEEECC-CCS------SCCSS----SCHHHH-----HCCSCEEEECSSHHHHHHHHHHHHHT--
T ss_pred Cchh-hhhhhccCCceeeeccc-CCH------HHHHH----HHHHHH-----hCCCCEEEEECChhHHHHHHHHHHHc--
Confidence 9765 233332 2333322221 110 00001 111111 13679999999999999999999873
Q ss_pred hccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceee--cCCCCCccce
Q 014006 239 SLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY--NPSSGMYSLD 316 (432)
Q Consensus 239 ~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~--~~~~~~~~~~ 316 (432)
+..+..+||+ +|.++++.|++|+.+||||||++++|+|+| +++|||+|++..+.+ +...++....
T Consensus 379 --------g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~ 445 (618)
T 2whx_A 379 --------GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAG 445 (618)
T ss_dssp --------TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEE
T ss_pred --------CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcc
Confidence 6778999984 788899999999999999999999999998 999999999877665 3333444556
Q ss_pred EeeecHhhHHHhhcccCCCC--CCeEEEecC
Q 014006 317 VVQISKVQANQRVGRAGRTR--PGKCYRLYP 345 (432)
Q Consensus 317 ~~~~s~~~~~qr~GRaGR~~--~G~~~~l~~ 345 (432)
..|.|.++|+||+|||||.+ +|.||.+++
T Consensus 446 d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 446 PIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp EEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred cccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 77899999999999999993 899999997
No 32
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.7e-41 Score=329.10 Aligned_cols=300 Identities=12% Similarity=0.094 Sum_probs=205.8
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHHH-HHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhC--CccCCe
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG--VRLGEE 80 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~-~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~--~~~~~~ 80 (432)
...+++|.++++.+.+|++++++||||||||. ++.+++... ..+.++++++|+++|+.|+++++.+... ..++..
T Consensus 20 ~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~ 97 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGF 97 (414)
T ss_dssp SCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEEC
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEE
Confidence 35679999999999999999999999999994 333333332 4567899999999999999999977643 333333
Q ss_pred eeeeeee------cccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcC---------CCC-HHHHHHHHHHHH
Q 014006 81 VGYAIRF------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHER---------SLN-TDILLGLVKRLV 144 (432)
Q Consensus 81 ~g~~~~~------~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~---------~~~-~~~~~~~l~~~~ 144 (432)
.|..... .......++|+|+||+++.+.+.. ..+.++++||+||||+. +++ .++....+..+.
T Consensus 98 ~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~ 176 (414)
T 3oiy_A 98 YSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAF 176 (414)
T ss_dssp CTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHH
Confidence 3321110 001123489999999999877643 35678999999999941 111 222222244444
Q ss_pred hhhc-----------CCcEEEEEeccc-ChH---H-HHhhccCCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHH
Q 014006 145 NLRA-----------SKLKILITSATL-DGE---K-VSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIH 208 (432)
Q Consensus 145 ~~~~-----------~~~~ii~~SAT~-~~~---~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (432)
...+ .+.|++++|||+ +.. . ...++ +..+.........+...+........ .. .+.
T Consensus 177 ~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~---l~----~~l 248 (414)
T 3oiy_A 177 STIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLL-NFTVGRLVSVARNITHVRISSRSKEK---LV----ELL 248 (414)
T ss_dssp HHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHH-SCCSSCCCCCCCSEEEEEESSCCHHH---HH----HHH
T ss_pred HhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhh-ccCcCccccccccchheeeccCHHHH---HH----HHH
Confidence 4433 468999999995 432 1 22232 21111111122223333333222222 11 111
Q ss_pred hcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEE-EecCCCCHHHHhccCCCCCCCccEEEEe----ecCc
Q 014006 209 VREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVIL-PLHGSLPPEMQVRVFSPPPPNCRRFIVS----TNIA 283 (432)
Q Consensus 209 ~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~-~~h~~l~~~~r~~~~~~f~~g~~~ilva----T~~~ 283 (432)
.. .++++||||++++.++.++..|.+. ++.+. .+||. +|. ++.|++|+.+|||| |+++
T Consensus 249 ~~-~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~ 311 (414)
T 3oiy_A 249 EI-FRDGILIFAQTEEEGKELYEYLKRF----------KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKL 311 (414)
T ss_dssp HH-HCSSEEEEESSHHHHHHHHHHHHHT----------TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCC
T ss_pred HH-cCCCEEEEECCHHHHHHHHHHHHHc----------CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchh
Confidence 11 2479999999999999999999873 67787 89984 444 99999999999999 9999
Q ss_pred ccccccCC-eEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC-----CCeEEEecCcc
Q 014006 284 ETSLTVDG-VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR-----PGKCYRLYPST 347 (432)
Q Consensus 284 ~~Gidi~~-v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~-----~G~~~~l~~~~ 347 (432)
++|+|+|+ |++||++|+|+. .|..+|+||+|||||.+ +|.|+.++.+.
T Consensus 312 ~~GiDip~~v~~VI~~~~p~~----------------~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~ 365 (414)
T 3oiy_A 312 TRGVDLPERIKYVIFWGTPSG----------------PDVYTYIQASGRSSRILNGVLVKGVSVIFEEDE 365 (414)
T ss_dssp CCCCCCTTTCCEEEEESCCTT----------------TCHHHHHHHHGGGCCEETTEECCEEEEEECCCH
T ss_pred hccCccccccCEEEEECCCCC----------------CCHHHHHHHhCccccCCCCCCcceEEEEEEccH
Confidence 99999999 999999887620 27789999999999983 79999999443
No 33
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=9e-41 Score=337.71 Aligned_cols=329 Identities=16% Similarity=0.201 Sum_probs=198.9
Q ss_pred CCCchhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCCCC---CcEEEecccchhhhHHHHHHHHHHh---C
Q 014006 2 ANLPILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTK---SGIIGVTQPRRVAAVSVARRVAQEL---G 74 (432)
Q Consensus 2 ~~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~~~---~~~vl~~~P~~~l~~q~~~~~~~~~---~ 74 (432)
+.+..+++|.++++.+.+++++++.+||||||| +++.+++....... +.++++++|+++|+.|+++.+.+.+ +
T Consensus 1 s~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 80 (555)
T 3tbk_A 1 SPLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLG 80 (555)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 357789999999999999999999999999999 33333333322222 6789999999999999999987765 4
Q ss_pred CccCCeeeeeeeecc--cCCCCceEEEcCHHHHHHHHhcCC--CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhh---
Q 014006 75 VRLGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR--- 147 (432)
Q Consensus 75 ~~~~~~~g~~~~~~~--~~~~~~~i~v~T~~~l~~~l~~~~--~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~--- 147 (432)
..++...|....... ......+|+|+||+++.+.+.... .+.++++||||||| +..+......++.......
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah-~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 81 YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECH-NTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGG-GCSTTCHHHHHHHHHHHHHTSS
T ss_pred cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECcc-ccCCcchHHHHHHHHHHhhhcc
Confidence 455444442211110 111358999999999999886654 57889999999999 4444434444444444332
Q ss_pred --cCCcEEEEEecccChH----------H---HHhhccCCCeeecCCC---------CCceeE-EeCCCCCc--------
Q 014006 148 --ASKLKILITSATLDGE----------K---VSKFFSNCPTLNVPGK---------LYPVEI-LHSKERPT-------- 194 (432)
Q Consensus 148 --~~~~~ii~~SAT~~~~----------~---~~~~~~~~~~i~~~~~---------~~~~~~-~~~~~~~~-------- 194 (432)
....+++++|||++.. . +...++ ...+..... ..+... ........
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALD-ASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTT-CSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcC-CeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHH
Confidence 1347999999999431 1 112221 112211110 000000 00000000
Q ss_pred --------------------------------------------------------------------------------
Q 014006 195 -------------------------------------------------------------------------------- 194 (432)
Q Consensus 195 -------------------------------------------------------------------------------- 194 (432)
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred ----------------------------------------------------chHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 014006 195 ----------------------------------------------------SYLESALKTAIDIHVREPEGDVLIFMTG 222 (432)
Q Consensus 195 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~lvF~~t 222 (432)
.......+.+........++++||||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 0000011111122223456899999999
Q ss_pred HHHHHHHHHHHHHHHhh--ccCCCCCCeEEEEecCCCCHHHHhccCCCCCC-CccEEEEeecCcccccccCCeEEEEeCC
Q 014006 223 QDDIEKLVSKLEDKIRS--LDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVIDCG 299 (432)
Q Consensus 223 ~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~-g~~~ilvaT~~~~~Gidi~~v~~VI~~~ 299 (432)
++.++.++..|...... +......+.....+||+|++++|.++++.|++ |..+|||||+++++|+|+|++++||++|
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYE 478 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEES
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeC
Confidence 99999999999874210 01111124455667889999999999999999 9999999999999999999999999988
Q ss_pred cccceeecCCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEecCccchhh
Q 014006 300 YVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (432)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~~~~ 351 (432)
.|. |..+|+||+|| ||.++|.||.|+++.+...
T Consensus 479 ~p~------------------s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~ 511 (555)
T 3tbk_A 479 YVG------------------NVIKMIQTRGR-GRARDSKCFLLTSSADVIE 511 (555)
T ss_dssp CCS------------------SCCCEECSSCC-CTTTSCEEEEEESCHHHHH
T ss_pred CCC------------------CHHHHHHhcCc-CcCCCceEEEEEcCCCHHH
Confidence 765 55578899999 9999999999998877654
No 34
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.6e-40 Score=324.63 Aligned_cols=292 Identities=20% Similarity=0.256 Sum_probs=200.5
Q ss_pred HHHHHhcCCEEEEEcCCCCCHHH-HHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecc-c
Q 014006 13 IVETVEQNPVVVVIGETGSGKST-QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFED-R 90 (432)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKT~-~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~-~ 90 (432)
..+.+.++++++++||||||||+ ++.+++.... ..+.++++++|+++|+.|+++++. + ..+++...... .
T Consensus 14 ~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~-~~~~~~lvl~Ptr~La~Q~~~~l~---g----~~v~~~~~~~~~~ 85 (459)
T 2z83_A 14 SPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAI-QQRLRTAVLAPTRVVAAEMAEALR---G----LPVRYQTSAVQRE 85 (459)
T ss_dssp -CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHH-HTTCCEEEEECSHHHHHHHHHHTT---T----SCEEECC------
T ss_pred HHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHH-hCCCcEEEECchHHHHHHHHHHhc---C----ceEeEEecccccC
Confidence 34567789999999999999993 3444444322 245789999999999999998774 2 22222211111 1
Q ss_pred CCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhcc
Q 014006 91 TSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS 170 (432)
Q Consensus 91 ~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~ 170 (432)
..+...+.++|.+.+.+.+.....+.++++|||||||++..........+..... ..+.|+++||||++.+. ..+..
T Consensus 86 ~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~--~~~~~~il~SAT~~~~~-~~~~~ 162 (459)
T 2z83_A 86 HQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE--LGEAAAIFMTATPPGTT-DPFPD 162 (459)
T ss_dssp --CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH--TTSCEEEEECSSCTTCC-CSSCC
T ss_pred CCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc--cCCccEEEEEcCCCcch-hhhcc
Confidence 2345667889999999888888889999999999999543222333333333322 23589999999998542 22221
Q ss_pred -CCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeE
Q 014006 171 -NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAV 249 (432)
Q Consensus 171 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~ 249 (432)
+.++..+.. ..+.. ..... ...+ ....+++||||+|+++++.+++.|.+. ++.
T Consensus 163 ~~~pi~~~~~-~~~~~------~~~~~----~~~l-----~~~~~~~LVF~~s~~~~~~l~~~L~~~----------g~~ 216 (459)
T 2z83_A 163 SNAPIHDLQD-EIPDR------AWSSG----YEWI-----TEYAGKTVWFVASVKMGNEIAMCLQRA----------GKK 216 (459)
T ss_dssp CSSCEEEEEC-CCCSS------CCSSC----CHHH-----HHCCSCEEEECSCHHHHHHHHHHHHHT----------TCC
T ss_pred CCCCeEEecc-cCCcc------hhHHH----HHHH-----HhcCCCEEEEeCChHHHHHHHHHHHhc----------CCc
Confidence 223222111 01100 00000 0111 113679999999999999999999873 777
Q ss_pred EEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccc---eEeeecHhhHH
Q 014006 250 ILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSL---DVVQISKVQAN 326 (432)
Q Consensus 250 ~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~---~~~~~s~~~~~ 326 (432)
+..+||. +|.++++.|++|+.+|||||+++++|+|+|+ ++|||+|..+.+.|+. .+...+ ...|.|.++|+
T Consensus 217 v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~-~~~~~~~~~~d~p~s~~~~~ 290 (459)
T 2z83_A 217 VIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILE-EGEGRVILGNPSPITSASAA 290 (459)
T ss_dssp EEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEEC-SSSCEEEECSCEECCHHHHH
T ss_pred EEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccc-ccccccccccCCCCCHHHHH
Confidence 8899984 7899999999999999999999999999999 9999999887776652 222222 34899999999
Q ss_pred HhhcccCCCC--CCeEEEecCcc
Q 014006 327 QRVGRAGRTR--PGKCYRLYPST 347 (432)
Q Consensus 327 qr~GRaGR~~--~G~~~~l~~~~ 347 (432)
||+|||||.+ +|.||.++++.
T Consensus 291 QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 291 QRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHTTSSCCTTCCCEEEEECSCC
T ss_pred HhccccCCCCCCCCeEEEEEccc
Confidence 9999999994 89999999775
No 35
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-39 Score=321.92 Aligned_cols=317 Identities=17% Similarity=0.205 Sum_probs=218.4
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCC---ccCCe
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV---RLGEE 80 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~---~~~~~ 80 (432)
++++++|.++++.+.++ ++++.+|||+|||..+..++.......+.++++++|+++|+.|..+++.+.++. .++..
T Consensus 8 ~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~ 86 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVAL 86 (494)
T ss_dssp HCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEE
T ss_pred CCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEe
Confidence 57899999999999999 899999999999944433333221134568999999999999999999888765 44433
Q ss_pred eeeeeeecc-cCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q 014006 81 VGYAIRFED-RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (432)
Q Consensus 81 ~g~~~~~~~-~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SA 158 (432)
.|....... ......+|+++||+.+.+.+.... .+.++++||+|||| +..+......+.+.+.... +..++++|||
T Consensus 87 ~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH-~~~~~~~~~~~~~~~~~~~-~~~~~l~lTa 164 (494)
T 1wp9_A 87 TGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAH-RAVGNYAYVFIAREYKRQA-KNPLVIGLTA 164 (494)
T ss_dssp CSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGG-GCSTTCHHHHHHHHHHHHC-SSCCEEEEES
T ss_pred eCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCc-ccCCCCcHHHHHHHHHhcC-CCCeEEEEec
Confidence 442111110 111357899999999998886554 68899999999999 4544334444444444333 3589999999
Q ss_pred ccC--hHHHHhhcc---CCCeeecCC-CC------CceeEEe--CCCC--------------------------------
Q 014006 159 TLD--GEKVSKFFS---NCPTLNVPG-KL------YPVEILH--SKER-------------------------------- 192 (432)
Q Consensus 159 T~~--~~~~~~~~~---~~~~i~~~~-~~------~~~~~~~--~~~~-------------------------------- 192 (432)
|+. .+.+..++. ......... .. .+....+ ...+
T Consensus 165 Tp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (494)
T 1wp9_A 165 SPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSP 244 (494)
T ss_dssp CSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCT
T ss_pred CCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 995 233333322 111100000 00 0000000 0000
Q ss_pred ----------------------Cc------------------------------chH-----------------------
Q 014006 193 ----------------------PT------------------------------SYL----------------------- 197 (432)
Q Consensus 193 ----------------------~~------------------------------~~~----------------------- 197 (432)
.. .++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (494)
T 1wp9_A 245 DIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKR 324 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHH
T ss_pred CcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHH
Confidence 00 000
Q ss_pred -----------------HHHHHHHHHHHhc----CCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecC-
Q 014006 198 -----------------ESALKTAIDIHVR----EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHG- 255 (432)
Q Consensus 198 -----------------~~~~~~~~~~~~~----~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~- 255 (432)
......+..+... ..++++||||++++.++.+++.|.+. ++.+..+||
T Consensus 325 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~g~ 394 (494)
T 1wp9_A 325 MKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD----------GIKAKRFVGQ 394 (494)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT----------TCCEEEECCS
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc----------CCCcEEEecc
Confidence 0011112222222 56789999999999999999999873 777889999
Q ss_pred -------CCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHh
Q 014006 256 -------SLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQR 328 (432)
Q Consensus 256 -------~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr 328 (432)
+++.++|.++++.|++|..+|||||+++++|+|+|++++||++|.+. +...|.||
T Consensus 395 ~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~------------------~~~~~~Qr 456 (494)
T 1wp9_A 395 ASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP------------------SAIRSIQR 456 (494)
T ss_dssp SCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCH------------------HHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCC------------------CHHHHHHH
Confidence 99999999999999999999999999999999999999999988643 77799999
Q ss_pred hcccCCCCCCeEEEecCccchhh
Q 014006 329 VGRAGRTRPGKCYRLYPSTVYHD 351 (432)
Q Consensus 329 ~GRaGR~~~G~~~~l~~~~~~~~ 351 (432)
+||+||.++|.+|.|+++...+.
T Consensus 457 ~GR~~R~g~g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 457 RGRTGRHMPGRVIILMAKGTRDE 479 (494)
T ss_dssp HTTSCSCCCSEEEEEEETTSHHH
T ss_pred HhhccCCCCceEEEEEecCCHHH
Confidence 99999998899999998876654
No 36
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.3e-39 Score=339.26 Aligned_cols=327 Identities=16% Similarity=0.189 Sum_probs=182.0
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCCCC---CcEEEecccchhhhHHHHHHHHHHh---CCc
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTK---SGIIGVTQPRRVAAVSVARRVAQEL---GVR 76 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~~~---~~~vl~~~P~~~l~~q~~~~~~~~~---~~~ 76 (432)
...+++|.++++.+.+|+++++.+||||||| +++.+++....... +.++++++|+++|+.|+.+.+.+.+ +..
T Consensus 247 ~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (797)
T 4a2q_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (797)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCce
Confidence 4567899999999999999999999999999 33333333322222 6789999999999999999987765 555
Q ss_pred cCCeeeeeeeecc--cCCCCceEEEcCHHHHHHHHhcCC--CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhh----c
Q 014006 77 LGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR----A 148 (432)
Q Consensus 77 ~~~~~g~~~~~~~--~~~~~~~i~v~T~~~l~~~l~~~~--~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~----~ 148 (432)
++...|....... ....+.+|+|+||+++.+.+.... .+.++++||||||| +.........++..+.... .
T Consensus 327 v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH-~~~~~~~~~~i~~~~~~~~~~~~~ 405 (797)
T 4a2q_A 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECH-NTTGNHPYNVLMTRYLEQKFNSAS 405 (797)
T ss_dssp EEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGG-GCSTTSHHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECcc-ccCCCccHHHHHHHHHHHhhccCC
Confidence 5555553211111 112468999999999999886543 57889999999999 4544444444444444431 3
Q ss_pred CCcEEEEEecccCh----------HHHH---hhccCCCeeecCC-----------CCCceeEEeCCCC------------
Q 014006 149 SKLKILITSATLDG----------EKVS---KFFSNCPTLNVPG-----------KLYPVEILHSKER------------ 192 (432)
Q Consensus 149 ~~~~ii~~SAT~~~----------~~~~---~~~~~~~~i~~~~-----------~~~~~~~~~~~~~------------ 192 (432)
...++++||||+.. +.+. ..++ ...+.... ++......+....
T Consensus 406 ~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~-~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 484 (797)
T 4a2q_A 406 QLPQILGLTASVGVGNAKNIEETIEHICSLCSYLD-IQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 484 (797)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHT-CSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCeEEEEcCCccccccccHHHHHHHHHHHHHhcC-CcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHH
Confidence 34899999999942 1111 1221 11111100 0000000000000
Q ss_pred -------------------------Ccc---hH-----------------------------------------------
Q 014006 193 -------------------------PTS---YL----------------------------------------------- 197 (432)
Q Consensus 193 -------------------------~~~---~~----------------------------------------------- 197 (432)
... +.
T Consensus 485 ~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 564 (797)
T 4a2q_A 485 SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 564 (797)
T ss_dssp HHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccH
Confidence 000 00
Q ss_pred -----------------------------------------------HHHHHHHHHH----HhcCCCCCEEEEeCCHHHH
Q 014006 198 -----------------------------------------------ESALKTAIDI----HVREPEGDVLIFMTGQDDI 226 (432)
Q Consensus 198 -----------------------------------------------~~~~~~~~~~----~~~~~~~~~lvF~~t~~~~ 226 (432)
...+..+..+ +....++++||||++++.+
T Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~ 644 (797)
T 4a2q_A 565 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (797)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHH
Confidence 0001111111 1225568999999999999
Q ss_pred HHHHHHHHHHH--hhccCCCCCCeEEEEecCCCCHHHHhccCCCCCC-CccEEEEeecCcccccccCCeEEEEeCCcccc
Q 014006 227 EKLVSKLEDKI--RSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQ 303 (432)
Q Consensus 227 ~~~~~~L~~~~--~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~-g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~ 303 (432)
+.+++.|.+.. ..+......+.....+||+|+.++|.++++.|++ |..+|||||+++++|||+|++++||++|.|.
T Consensus 645 ~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~- 723 (797)
T 4a2q_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG- 723 (797)
T ss_dssp HHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESCCS-
T ss_pred HHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCC-
Confidence 99999997631 0111111134556678999999999999999999 9999999999999999999999999988754
Q ss_pred eeecCCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEecCccchhh
Q 014006 304 RQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVYHD 351 (432)
Q Consensus 304 ~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~~~~ 351 (432)
|..+|+||+|| ||.++|.||.|+++.+.+.
T Consensus 724 -----------------s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 724 -----------------NVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 753 (797)
T ss_dssp -----------------CHHHHHTC--------CCCEEEEECCHHHHH
T ss_pred -----------------CHHHHHHhcCC-CCCCCceEEEEEeCCcHHH
Confidence 77899999999 9999999999998877654
No 37
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=7.1e-39 Score=312.56 Aligned_cols=286 Identities=21% Similarity=0.257 Sum_probs=191.2
Q ss_pred HHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeee-cccCCC
Q 014006 16 TVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF-EDRTSE 93 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~ 93 (432)
.+.+|++++++|||||||| .++++++.... ..+.++++++||++|+.|+++.+. +. .+++.... .....+
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~-~~~~~~lil~Ptr~La~Q~~~~l~---~~----~v~~~~~~~~~v~Tp 75 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECA-RRRLRTLVLAPTRVVLSEMKEAFH---GL----DVKFHTQAFSAHGSG 75 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHTT---TS----CEEEESSCCCCCCCS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHH-hcCCeEEEEcchHHHHHHHHHHHh---cC----CeEEecccceeccCC
Confidence 4678999999999999999 44444544322 235689999999999999998764 11 12221111 112233
Q ss_pred CceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHH--HHHHHHHHhhhcCCcEEEEEecccChHHHHhhcc-
Q 014006 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDIL--LGLVKRLVNLRASKLKILITSATLDGEKVSKFFS- 170 (432)
Q Consensus 94 ~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~--~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~- 170 (432)
..-+.+.+.+.+...+.....+.++++||+||+|+ . +.++. ...+..+.. +.+.|+++||||+++.. ..+..
T Consensus 76 ~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~-~-~~~~~~~~~~~~~~~~--~~~~~~l~~SAT~~~~~-~~~~~~ 150 (440)
T 1yks_A 76 REVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHF-L-DPASIAARGWAAHRAR--ANESATILMTATPPGTS-DEFPHS 150 (440)
T ss_dssp SCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTC-C-SHHHHHHHHHHHHHHH--TTSCEEEEECSSCTTCC-CSSCCC
T ss_pred ccceeeecccchhHhhhCcccccCccEEEEECccc-c-CcchHHHHHHHHHHhc--cCCceEEEEeCCCCchh-hhhhhc
Confidence 44455667777777777666789999999999994 3 44442 222333322 23589999999997642 22221
Q ss_pred CCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEE
Q 014006 171 NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVI 250 (432)
Q Consensus 171 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 250 (432)
..++..+.. .+........ +..+. ..++++||||||+++++.+++.|.+. ++.+
T Consensus 151 ~~~~~~~~~-------~~~~~~~~~~----~~~l~-----~~~~~~lVF~~s~~~a~~l~~~L~~~----------~~~v 204 (440)
T 1yks_A 151 NGEIEDVQT-------DIPSEPWNTG----HDWIL-----ADKRPTAWFLPSIRAANVMAASLRKA----------GKSV 204 (440)
T ss_dssp SSCEEEEEC-------CCCSSCCSSS----CHHHH-----HCCSCEEEECSCHHHHHHHHHHHHHT----------TCCE
T ss_pred CCCeeEeee-------ccChHHHHHH----HHHHH-----hcCCCEEEEeCCHHHHHHHHHHHHHc----------CCCE
Confidence 111111110 0100111111 11111 13679999999999999999999873 6779
Q ss_pred EEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceee-cCCCCCccceEeeecHhhHHHhh
Q 014006 251 LPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY-NPSSGMYSLDVVQISKVQANQRV 329 (432)
Q Consensus 251 ~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~qr~ 329 (432)
..+|| ++|.++++.|++|+.+|||||+++++|+|+| +++|||+|+...+.| ++.+++......|.+.++|+||+
T Consensus 205 ~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~ 279 (440)
T 1yks_A 205 VVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRR 279 (440)
T ss_dssp EECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHH
T ss_pred EEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhc
Confidence 99999 5799999999999999999999999999999 999999999887766 33334444556789999999999
Q ss_pred cccCCC--CCCeEEEecC
Q 014006 330 GRAGRT--RPGKCYRLYP 345 (432)
Q Consensus 330 GRaGR~--~~G~~~~l~~ 345 (432)
||+||. ++|.||.+++
T Consensus 280 GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 280 GRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp TTSSCCTTCCCEEEEECS
T ss_pred cccCCCCCCCceEEEEec
Confidence 999996 5899999973
No 38
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1e-39 Score=330.24 Aligned_cols=315 Identities=17% Similarity=0.162 Sum_probs=215.7
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCce
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (432)
..++++++++||||||||+.+...+... ...++++|+|+||.|+++++.+ .+..++..+|.............+
T Consensus 152 ~l~rk~vlv~apTGSGKT~~al~~l~~~-----~~gl~l~PtR~LA~Qi~~~l~~-~g~~v~lltG~~~~iv~TpGr~~~ 225 (677)
T 3rc3_A 152 AMQRKIIFHSGPTNSGKTYHAIQKYFSA-----KSGVYCGPLKLLAHEIFEKSNA-AGVPCDLVTGEERVTVQPNGKQAS 225 (677)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHS-----SSEEEEESSHHHHHHHHHHHHH-TTCCEEEECSSCEECCSTTCCCCS
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhc-----CCeEEEeCHHHHHHHHHHHHHh-cCCcEEEEECCeeEEecCCCcccc
Confidence 3578899999999999997544444332 1237789999999999999855 466666666643332212223467
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccCh-HHHHhhccCCCee
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG-EKVSKFFSNCPTL 175 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~-~~~~~~~~~~~~i 175 (432)
++++|++.+. ....++++||||+| +..+.++...+...+........+++++|||.+. ..+....+....+
T Consensus 226 il~~T~e~~~-------l~~~v~lvVIDEaH-~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~~v 297 (677)
T 3rc3_A 226 HVSCTVEMCS-------VTTPYEVAVIDEIQ-MIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEV 297 (677)
T ss_dssp EEEEEGGGCC-------SSSCEEEEEECSGG-GGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCEEE
T ss_pred eeEecHhHhh-------hcccCCEEEEecce-ecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCceEE
Confidence 7788875432 45778999999999 5567666666555555555356899999999643 2233333222222
Q ss_pred ecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecC
Q 014006 176 NVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHG 255 (432)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~ 255 (432)
....+..+...... .. .. .... .+..+|||+|+++++.++..|.+. ++.+.++||
T Consensus 298 ~~~~r~~~l~~~~~--~l-~~-----------l~~~-~~g~iIf~~s~~~ie~la~~L~~~----------g~~v~~lHG 352 (677)
T 3rc3_A 298 RDYKRLTPISVLDH--AL-ES-----------LDNL-RPGDCIVCFSKNDIYSVSRQIEIR----------GLESAVIYG 352 (677)
T ss_dssp EECCCSSCEEECSS--CC-CS-----------GGGC-CTTEEEECSSHHHHHHHHHHHHHT----------TCCCEEECT
T ss_pred EEeeecchHHHHHH--HH-HH-----------HHhc-CCCCEEEEcCHHHHHHHHHHHHhc----------CCCeeeeec
Confidence 22222222222111 00 00 0011 334588899999999999999873 678999999
Q ss_pred CCCHHHHhccCCCCCC--CccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccC
Q 014006 256 SLPPEMQVRVFSPPPP--NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG 333 (432)
Q Consensus 256 ~l~~~~r~~~~~~f~~--g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaG 333 (432)
+|++++|.++++.|++ |.++|||||+++++|||+ ++++||++|+++. .||+..+. ...|.|.++|+||+||||
T Consensus 353 ~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~---~~~p~s~~~~~QR~GRAG 427 (677)
T 3rc3_A 353 SLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER---ELEPITTSQALQIAGRAG 427 (677)
T ss_dssp TSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHHHHHHHTTBT
T ss_pred cCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc---ccccCCHHHHHHHhcCCC
Confidence 9999999999999998 899999999999999999 8999999999887 67766433 245899999999999999
Q ss_pred CCC----CCeEEEecCcc--chhhcCCCCCCCccccCCchHHHHHHhhC
Q 014006 334 RTR----PGKCYRLYPST--VYHDEFLDVTVPEIQRSSLAGSVLYLKSL 376 (432)
Q Consensus 334 R~~----~G~~~~l~~~~--~~~~~~~~~~~~~i~~~~l~~~~l~l~~~ 376 (432)
|.+ +|.||.+++++ .+.. +.....+++.+.++....++++.+
T Consensus 428 R~g~~g~~G~v~~l~~~d~~~~~~-~~~~~~~~i~~~~l~p~~~~l~~~ 475 (677)
T 3rc3_A 428 RFSSRFKEGEVTTMNHEDLSLLKE-ILKRPVDPIRAAGLHPTAEQIEMF 475 (677)
T ss_dssp CTTSSCSSEEEEESSTTHHHHHHH-HHHSCCCCCCCEEECCCHHHHHHH
T ss_pred CCCCCCCCEEEEEEecchHHHHHH-HHhcCcchhhhccCCChHHHHHHH
Confidence 995 58999998776 4444 666777888886665544544443
No 39
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.1e-40 Score=343.90 Aligned_cols=318 Identities=17% Similarity=0.181 Sum_probs=199.7
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHH-HHHHHhhc----CCCCCcEEEecccchhhhHHH-HHHHHHHhC--
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQ-LSQILHRH----GYTKSGIIGVTQPRRVAAVSV-ARRVAQELG-- 74 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~-~~~~~~~~----~~~~~~~vl~~~P~~~l~~q~-~~~~~~~~~-- 74 (432)
.++.+++|.++++.+.+|+++++.+|||+|||.. +.+++... ....+.++++++|+++|+.|+ .+.+.+.++
T Consensus 5 ~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~ 84 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW 84 (699)
T ss_dssp --CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTT
T ss_pred CCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcC
Confidence 5788999999999999999999999999999933 22232221 112236899999999999999 999988876
Q ss_pred CccCCeeeeeeeec--ccCCCCceEEEcCHHHHHHHHhcC-------CCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 75 VRLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSN-------PDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 75 ~~~~~~~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~-------~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
..++...|...... .......+|+|+||++|.+.+... ..+.++++|||||||+ ......+..++..++.
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~-~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH-TNKEAVYNNIMRHYLM 163 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGG-CBTTBSSCSHHHHHHH
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccc-cCccchHHHHHHHHHH
Confidence 45555555322211 111256899999999999887321 2678899999999994 3332222222222222
Q ss_pred h----hc---------CCcEEEEEecccChH----------H---HHhhccCCCeeecCCC--------CCceeEE-eCC
Q 014006 146 L----RA---------SKLKILITSATLDGE----------K---VSKFFSNCPTLNVPGK--------LYPVEIL-HSK 190 (432)
Q Consensus 146 ~----~~---------~~~~ii~~SAT~~~~----------~---~~~~~~~~~~i~~~~~--------~~~~~~~-~~~ 190 (432)
. .. ...++++||||+... . +...+....+...... ..|.... ...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 243 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIAD 243 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC
T ss_pred hhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcc
Confidence 1 11 347999999999751 1 1222222111111100 0111000 000
Q ss_pred C-CC-----------------------cc-----h---------------------------------------------
Q 014006 191 E-RP-----------------------TS-----Y--------------------------------------------- 196 (432)
Q Consensus 191 ~-~~-----------------------~~-----~--------------------------------------------- 196 (432)
. .. .. +
T Consensus 244 ~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (699)
T 4gl2_A 244 ATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAY 323 (699)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 00 0
Q ss_pred ----------------------------------H-------------------------HHHHHHHHHHHhcCC-CCCE
Q 014006 197 ----------------------------------L-------------------------ESALKTAIDIHVREP-EGDV 216 (432)
Q Consensus 197 ----------------------------------~-------------------------~~~~~~~~~~~~~~~-~~~~ 216 (432)
+ ....+.+........ ++++
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~ 403 (699)
T 4gl2_A 324 THLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARG 403 (699)
T ss_dssp HHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCE
T ss_pred HHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcE
Confidence 0 000011111122223 6899
Q ss_pred EEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCC--------CCHHHHhccCCCCCCCccEEEEeecCcccccc
Q 014006 217 LIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGS--------LPPEMQVRVFSPPPPNCRRFIVSTNIAETSLT 288 (432)
Q Consensus 217 lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~--------l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gid 288 (432)
||||++++.++.+++.|.+. ..+. ..++.+..+||+ |+.++|.++++.|++|..+|||||+++++|||
T Consensus 404 IVF~~s~~~~~~l~~~L~~~-~~l~---~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 404 IIFTKTRQSAYALSQWITEN-EKFA---EVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp EEECSCHHHHHHHHHHHHSS-CSCC--------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred EEEECcHHHHHHHHHHHHhC-cccc---ccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 99999999999999999763 1111 126888999999 99999999999999999999999999999999
Q ss_pred cCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEec
Q 014006 289 VDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLY 344 (432)
Q Consensus 289 i~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~ 344 (432)
+|++++||++|+|. |..+|+||+|||||.+ +.++.+.
T Consensus 480 ip~v~~VI~~d~p~------------------s~~~~~Qr~GRArr~g-~~~~l~~ 516 (699)
T 4gl2_A 480 IKECNIVIRYGLVT------------------NEIAMVQARGRARADE-STYVLVA 516 (699)
T ss_dssp CCSCCCCEEESCCC------------------CHHHHHHHHTTSCSSS-CEEEEEE
T ss_pred cccCCEEEEeCCCC------------------CHHHHHHHcCCCCCCC-ceEEEEE
Confidence 99999999988755 7789999999987654 4444443
No 40
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2e-38 Score=308.85 Aligned_cols=281 Identities=19% Similarity=0.261 Sum_probs=195.5
Q ss_pred cCCEEEEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeee-cccCCCCce
Q 014006 19 QNPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRF-EDRTSERTL 96 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~ 96 (432)
+|++++++|||||||| .++++++.... ..+.++++++||++|+.|+++.+. +.. +++.... .....+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~-~~g~~~lvl~Pt~~La~Q~~~~~~---~~~----v~~~~~~~~~~~~~~~~ 72 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAV-KKRLRTVILAPTRVVASEMYEALR---GEP----IRYMTPAVQSERTGNEI 72 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHTT---TSC----EEEC---------CCCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH-hCCCCEEEECcHHHHHHHHHHHhC---CCe----EEEEecCccccCCCCce
Confidence 4789999999999999 44444542221 345689999999999999887663 332 3322211 223334567
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHH--HHHHHHHHHhhhcCCcEEEEEecccChHHHHhhcc-CCC
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDI--LLGLVKRLVNLRASKLKILITSATLDGEKVSKFFS-NCP 173 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~--~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~~-~~~ 173 (432)
+.++|.+.+.+.+.....+.++++|||||+|. ++..+ ....++.+. .+.+.|+++||||++.. +..+.. +.+
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~--~~~~~~~~~~~l~~~~--~~~~~~~l~~SAT~~~~-~~~~~~~~~~ 147 (431)
T 2v6i_A 73 VDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHF--LDPASVAARGYIETRV--SMGDAGAIFMTATPPGT-TEAFPPSNSP 147 (431)
T ss_dssp EEEEEHHHHHHHHHHTCCCCCCSEEEEESTTC--CSHHHHHHHHHHHHHH--HTTSCEEEEEESSCTTC-CCSSCCCSSC
T ss_pred EEEEchHHHHHHHhcCccccCCCEEEEeCCcc--CCccHHHHHHHHHHHh--hCCCCcEEEEeCCCCcc-hhhhcCCCCc
Confidence 78889999988887777899999999999994 34333 333333332 23358999999999753 122211 122
Q ss_pred eeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEe
Q 014006 174 TLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPL 253 (432)
Q Consensus 174 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 253 (432)
+..+... +. ...... . .... ...++++|||||++++++.+++.|.+. +..+..+
T Consensus 148 i~~~~~~-------~~-~~~~~~---~----~~~l-~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~v~~l 201 (431)
T 2v6i_A 148 IIDEETR-------IP-DKAWNS---G----YEWI-TEFDGRTVWFVHSIKQGAEIGTCLQKA----------GKKVLYL 201 (431)
T ss_dssp CEEEECC-------CC-SSCCSS---C----CHHH-HSCSSCEEEECSSHHHHHHHHHHHHHT----------TCCEEEE
T ss_pred eeecccc-------CC-HHHHHH---H----HHHH-HcCCCCEEEEeCCHHHHHHHHHHHHHc----------CCeEEEe
Confidence 2211110 10 000000 1 1111 123679999999999999999999873 6779999
Q ss_pred cCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccC
Q 014006 254 HGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG 333 (432)
Q Consensus 254 h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaG 333 (432)
||+ +|.+++++|++|+.+|||||+++++|+|+| +.+||++|.++.+.|| ..++.-....|.+.++|+||+||+|
T Consensus 202 hg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 202 NRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp STT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred CCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHHHHHHhhhccC
Confidence 997 678899999999999999999999999999 9999999999988888 4555556678899999999999999
Q ss_pred CCC--CCeEEEec
Q 014006 334 RTR--PGKCYRLY 344 (432)
Q Consensus 334 R~~--~G~~~~l~ 344 (432)
|.+ .|.++.+.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 994 34444443
No 41
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=5.4e-38 Score=332.33 Aligned_cols=325 Identities=16% Similarity=0.196 Sum_probs=181.2
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCCCC---CcEEEecccchhhhHHHHHHHHHHh---CCc
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTK---SGIIGVTQPRRVAAVSVARRVAQEL---GVR 76 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~~~---~~~vl~~~P~~~l~~q~~~~~~~~~---~~~ 76 (432)
...+++|.++++.+.+|+++++.+||||||| +++.+++....... +.++++++|+++|+.|+++.+.+.+ +..
T Consensus 247 ~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (936)
T 4a2w_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (936)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 4567899999999999999999999999999 33444444333222 6789999999999999999987765 455
Q ss_pred cCCeeeeeeeecc--cCCCCceEEEcCHHHHHHHHhcCC--CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhh----c
Q 014006 77 LGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR----A 148 (432)
Q Consensus 77 ~~~~~g~~~~~~~--~~~~~~~i~v~T~~~l~~~l~~~~--~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~----~ 148 (432)
++...|....... ......+|+|+||++|.+.+.... .+.++++|||||||+ ....+....++..+.... .
T Consensus 327 v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~-~~~~~~~~~i~~~~~~~~~~~~~ 405 (936)
T 4a2w_A 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN-TTGNHPYNVLMTRYLEQKFNSAS 405 (936)
T ss_dssp EEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGG-CSTTCHHHHHHHHHHHHHHTTCS
T ss_pred EEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccc-cCCCccHHHHHHHHHHHhhccCC
Confidence 5555553211111 112457999999999999886543 577899999999994 444434444444444431 3
Q ss_pred CCcEEEEEecccCh----------HHHH---hhccCCCeeecCCC---------CCceeEE-eCCC--------------
Q 014006 149 SKLKILITSATLDG----------EKVS---KFFSNCPTLNVPGK---------LYPVEIL-HSKE-------------- 191 (432)
Q Consensus 149 ~~~~ii~~SAT~~~----------~~~~---~~~~~~~~i~~~~~---------~~~~~~~-~~~~-------------- 191 (432)
...++++||||+.. +.+. ..++ ...+..... ..|.... ....
T Consensus 406 ~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~-~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~ 484 (936)
T 4a2w_A 406 QLPQILGLTASVGVGNAKNIEETIEHICSLCSYLD-IQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 484 (936)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHT-CSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CcCeEEEecCCcccccchhHHHHHHHHHHHHHhcC-CceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHH
Confidence 34899999999942 1111 1111 111111000 0000000 0000
Q ss_pred ------------------------CCcc---hH-----------------------------------------------
Q 014006 192 ------------------------RPTS---YL----------------------------------------------- 197 (432)
Q Consensus 192 ------------------------~~~~---~~----------------------------------------------- 197 (432)
.... ++
T Consensus 485 ~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~ 564 (936)
T 4a2w_A 485 SETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 564 (936)
T ss_dssp HHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 0000 00
Q ss_pred -----------------------------------------------HHHHHHHHHHHh----cCCCCCEEEEeCCHHHH
Q 014006 198 -----------------------------------------------ESALKTAIDIHV----REPEGDVLIFMTGQDDI 226 (432)
Q Consensus 198 -----------------------------------------------~~~~~~~~~~~~----~~~~~~~lvF~~t~~~~ 226 (432)
......+..+.. ...++++||||++++.+
T Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~a 644 (936)
T 4a2w_A 565 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (936)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHH
Confidence 000111111221 24567999999999999
Q ss_pred HHHHHHHHHHH--hhccCCCCCCeEEEEecCCCCHHHHhccCCCCCC-CccEEEEeecCcccccccCCeEEEEeCCcccc
Q 014006 227 EKLVSKLEDKI--RSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPP-NCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQ 303 (432)
Q Consensus 227 ~~~~~~L~~~~--~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~-g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~ 303 (432)
+.+++.|.+.. ..+......+.....+||+|+.++|.+++++|++ |..+|||||+++++|||+|++++||++|.|.
T Consensus 645 e~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~- 723 (936)
T 4a2w_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG- 723 (936)
T ss_dssp HHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESCCS-
T ss_pred HHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCC-
Confidence 99999998741 1111111124556677999999999999999999 9999999999999999999999999988654
Q ss_pred eeecCCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEecCccch
Q 014006 304 RQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTVY 349 (432)
Q Consensus 304 ~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~~ 349 (432)
|..+|+||+|| ||.++|.||.|+++...
T Consensus 724 -----------------s~~~~iQr~GR-GR~~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 724 -----------------NVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (936)
T ss_dssp -----------------CSHHHHCC--------CCCEEEEESCHHH
T ss_pred -----------------CHHHHHHhcCC-CCCCCCEEEEEEeCCCH
Confidence 66799999999 99999999999987654
No 42
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=4.6e-38 Score=319.13 Aligned_cols=292 Identities=20% Similarity=0.245 Sum_probs=200.8
Q ss_pred HHHHHHh------cCCEEEEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeee
Q 014006 12 TIVETVE------QNPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYA 84 (432)
Q Consensus 12 ~i~~~i~------~~~~~ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~ 84 (432)
+.+..+. ++++++++|||||||| .++++++.... ..+.++++++||++|+.|+++.+... . +++.
T Consensus 227 ~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~-~~~~~~lilaPTr~La~Q~~~~l~~~---~----i~~~ 298 (673)
T 2wv9_A 227 EPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAI-QKRLRTAVLAPTRVVAAEMAEALRGL---P----VRYL 298 (673)
T ss_dssp ---CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHTTTS---C----CEEC
T ss_pred cchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH-hCCCcEEEEccHHHHHHHHHHHHhcC---C----eeee
Confidence 5555555 8999999999999999 44455544322 24568999999999999999876421 1 2221
Q ss_pred eee-cccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChH
Q 014006 85 IRF-EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGE 163 (432)
Q Consensus 85 ~~~-~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~ 163 (432)
... .....+...+.+++.+.+.+.+.....+.++++|||||+|+...........+..+.. +.+.|+++||||++..
T Consensus 299 ~~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~--~~~~~vl~~SAT~~~~ 376 (673)
T 2wv9_A 299 TPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVE--AGEAAAIFMTATPPGT 376 (673)
T ss_dssp CC---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH--TTSCEEEEECSSCTTC
T ss_pred cccccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhcc--ccCCcEEEEcCCCChh
Confidence 111 1122344566778888888777777789999999999999432222223333333322 2458999999999754
Q ss_pred HHHhhcc-CCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccC
Q 014006 164 KVSKFFS-NCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDE 242 (432)
Q Consensus 164 ~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~ 242 (432)
. ..+.. +.++..+... +........ +..+ ...++++||||+++++++.++..|.+
T Consensus 377 i-~~~~~~~~~i~~v~~~-------~~~~~~~~~----l~~l-----~~~~~~~lVF~~s~~~~e~la~~L~~------- 432 (673)
T 2wv9_A 377 S-DPFPDTNSPVHDVSSE-------IPDRAWSSG----FEWI-----TDYAGKTVWFVASVKMSNEIAQCLQR------- 432 (673)
T ss_dssp C-CSSCCCSSCEEEEECC-------CCSSCCSSC----CHHH-----HSCCSCEEEECSSHHHHHHHHHHHHT-------
T ss_pred h-hhhcccCCceEEEeee-------cCHHHHHHH----HHHH-----HhCCCCEEEEECCHHHHHHHHHHHHh-------
Confidence 2 22221 1222211110 000011111 1111 12578999999999999999999986
Q ss_pred CCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCccccee--ecCCCCCccceEeee
Q 014006 243 GSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ--YNPSSGMYSLDVVQI 320 (432)
Q Consensus 243 ~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~--~~~~~~~~~~~~~~~ 320 (432)
.++.+..+|| ++|.++++.|++|+.+|||||+++++|||+| +++|||+|.+..+. ||...++..+...|.
T Consensus 433 ---~g~~v~~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~ 504 (673)
T 2wv9_A 433 ---AGKRVIQLNR----KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAI 504 (673)
T ss_dssp ---TTCCEEEECS----SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEEC
T ss_pred ---CCCeEEEeCh----HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCC
Confidence 3778999999 4899999999999999999999999999999 99999999766543 455544444455789
Q ss_pred cHhhHHHhhcccCCC--CCCeEEEecC
Q 014006 321 SKVQANQRVGRAGRT--RPGKCYRLYP 345 (432)
Q Consensus 321 s~~~~~qr~GRaGR~--~~G~~~~l~~ 345 (432)
|.++|+||+||+||. ++|.||.++.
T Consensus 505 s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 505 TSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp CHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred CHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 999999999999998 5899999973
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.9e-37 Score=329.21 Aligned_cols=270 Identities=11% Similarity=0.111 Sum_probs=184.4
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHHH-HHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHh--CCccCCee
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL--GVRLGEEV 81 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT~-~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~--~~~~~~~~ 81 (432)
..+++|.++++.+.+|++++++||||||||. +++.++... ..+.++++++|+++|+.|+++++.+.. +..++..+
T Consensus 78 ~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~--~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~ 155 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFY 155 (1104)
T ss_dssp CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEEC
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH--hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 5678999999999999999999999999994 444444333 456789999999999999999987732 22333333
Q ss_pred eeeeeec------ccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCC---------C-HHHHHHHHHHHHh
Q 014006 82 GYAIRFE------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSL---------N-TDILLGLVKRLVN 145 (432)
Q Consensus 82 g~~~~~~------~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~---------~-~~~~~~~l~~~~~ 145 (432)
|.....+ ......++|+|+||++|.+++.. ..+.++++|||||||+... + .++....++.+..
T Consensus 156 Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~ 234 (1104)
T 4ddu_A 156 SSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFS 234 (1104)
T ss_dssp TTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHH
Confidence 3211100 01123489999999999877643 3567899999999994211 1 1222222455555
Q ss_pred hhc-----------CCcEEEEEecccChHH-----HHhhccCCCeeecCCCCCceeEEeCCCCCcchHHHHHHHHHHHHh
Q 014006 146 LRA-----------SKLKILITSATLDGEK-----VSKFFSNCPTLNVPGKLYPVEILHSKERPTSYLESALKTAIDIHV 209 (432)
Q Consensus 146 ~~~-----------~~~~ii~~SAT~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (432)
..+ .+.|+++||||+.++. +..++ ...+.........+...+........ ... +..
T Consensus 235 ~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l-~i~v~~~~~~~~~i~~~~~~~~k~~~---L~~----ll~ 306 (1104)
T 4ddu_A 235 TIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLL-NFTVGRLVSVARNITHVRISSRSKEK---LVE----LLE 306 (1104)
T ss_dssp HHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHT-CCCCCBCCCCCCCEEEEEESCCCHHH---HHH----HHH
T ss_pred hcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcce-eEEeccCCCCcCCceeEEEecCHHHH---HHH----HHH
Confidence 444 5689999999954322 22222 21111111122233333333322222 111 111
Q ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEE-EecCCCCHHHHhccCCCCCCCccEEEEe----ecCcc
Q 014006 210 REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVIL-PLHGSLPPEMQVRVFSPPPPNCRRFIVS----TNIAE 284 (432)
Q Consensus 210 ~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~-~~h~~l~~~~r~~~~~~f~~g~~~ilva----T~~~~ 284 (432)
. .++++||||++++.++.++..|.. .++.+. .+|| +|++ ++.|++|+.+|||| |++++
T Consensus 307 ~-~~~~~LVF~~s~~~a~~l~~~L~~----------~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~Tdvla 369 (1104)
T 4ddu_A 307 I-FRDGILIFAQTEEEGKELYEYLKR----------FKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLT 369 (1104)
T ss_dssp H-HCSSEEEEESSSHHHHHHHHHHHH----------TTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHC
T ss_pred h-cCCCEEEEECcHHHHHHHHHHHHh----------CCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeE
Confidence 1 248999999999999999999987 377787 8998 2555 99999999999999 99999
Q ss_pred cccccCC-eEEEEeCCccc
Q 014006 285 TSLTVDG-VVYVIDCGYVK 302 (432)
Q Consensus 285 ~Gidi~~-v~~VI~~~~~~ 302 (432)
+|||+|+ |++|||+|+|+
T Consensus 370 rGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 370 RGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp CSCCCTTTCCEEEEESCCE
T ss_pred ecCcCCCCCCEEEEECCCC
Confidence 9999999 99999999998
No 44
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.4e-37 Score=319.20 Aligned_cols=299 Identities=15% Similarity=0.184 Sum_probs=203.1
Q ss_pred CchhhhHHHHHHHHhcC------CEEEEEcCCCCCHHH-HHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhC--
Q 014006 4 LPILQYEETIVETVEQN------PVVVVIGETGSGKST-QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG-- 74 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~------~~~ii~apTGsGKT~-~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~-- 74 (432)
+..+++|.++++.+.++ .+++++||||||||. ++.+++... ..+.++++++|+++|+.|+++++.+.+.
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l--~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~ 444 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNY--EAGFQTAFMVPTSILAIQHYRRTVESFSKF 444 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHH--HHTSCEEEECSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHHhhhc
Confidence 35688999999988765 589999999999993 333333222 2356899999999999999999988773
Q ss_pred -CccCCeeeeeeeecc------cCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhh
Q 014006 75 -VRLGEEVGYAIRFED------RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR 147 (432)
Q Consensus 75 -~~~~~~~g~~~~~~~------~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~ 147 (432)
..++..+|.....+. ......+|+|+||+.+.+ ...+.++++|||||+|. . .... +..+...
T Consensus 445 gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr-~-g~~q-----r~~l~~~ 513 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE----DVHFKNLGLVIIDEQHR-F-GVKQ-----REALMNK 513 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH----CCCCSCCCEEEEESCCC-C-----------CCCCSS
T ss_pred CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh----hhhccCCceEEecccch-h-hHHH-----HHHHHHh
Confidence 444444442221111 123468999999987643 45788999999999994 2 1111 1111122
Q ss_pred cCCcEEEEEecccChHHHHh-hccCCCeeecC---CCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCH
Q 014006 148 ASKLKILITSATLDGEKVSK-FFSNCPTLNVP---GKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQ 223 (432)
Q Consensus 148 ~~~~~ii~~SAT~~~~~~~~-~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~ 223 (432)
..+.++++||||+.++.+.. ++++..+..+. ....++...+..... .......+... ...+++++||||+.
T Consensus 514 ~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~---~~~l~~~i~~~--l~~g~qvlVf~~~i 588 (780)
T 1gm5_A 514 GKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDR---VNEVYEFVRQE--VMRGGQAFIVYPLI 588 (780)
T ss_dssp SSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSST---HHHHHHHHHHH--TTTSCCBCCBCCCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccch---HHHHHHHHHHH--HhcCCcEEEEecch
Confidence 23589999999997776553 34433332222 222344444333222 22233323222 24567999999976
Q ss_pred HH--------HHHHHHHHHH-HHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEE
Q 014006 224 DD--------IEKLVSKLED-KIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVY 294 (432)
Q Consensus 224 ~~--------~~~~~~~L~~-~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~ 294 (432)
++ ++.+++.|.+ . .++..+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|++++
T Consensus 589 e~se~l~~~~a~~l~~~L~~~~--------~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~ 660 (780)
T 1gm5_A 589 EESDKLNVKSAVEMYEYLSKEV--------FPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANV 660 (780)
T ss_dssp --------CHHHHHHHSGGGSC--------C---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCE
T ss_pred hhhhhhhHHHHHHHHHHHHhhh--------cCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCE
Confidence 54 4555555543 1 23677889999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecC
Q 014006 295 VIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYP 345 (432)
Q Consensus 295 VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~ 345 (432)
||+++.++ .+.+++.||+||+||. .+|.|+.+++
T Consensus 661 VIi~d~~r-----------------~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 661 MVIENPER-----------------FGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp EEBCSCSS-----------------SCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred EEEeCCCC-----------------CCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 99977543 1456888999999998 7899999987
No 45
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.3e-35 Score=318.50 Aligned_cols=300 Identities=18% Similarity=0.178 Sum_probs=209.5
Q ss_pred hhhhHHHHHHHHhc----CC--EEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCC---c
Q 014006 6 ILQYEETIVETVEQ----NP--VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV---R 76 (432)
Q Consensus 6 ~~~~q~~i~~~i~~----~~--~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~---~ 76 (432)
..++|.++++.+.+ ++ +++++||||||||..+...+... ...+.++++++||++|+.|+++++.+.++. .
T Consensus 604 ~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~-~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~ 682 (1151)
T 2eyq_A 604 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 682 (1151)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHH-HTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCC
T ss_pred CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHH-HHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCe
Confidence 47899999998876 65 99999999999994332222211 134669999999999999999999877642 2
Q ss_pred cCCeeeeeeeec------ccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCC
Q 014006 77 LGEEVGYAIRFE------DRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASK 150 (432)
Q Consensus 77 ~~~~~g~~~~~~------~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~ 150 (432)
++...|+....+ .......+|+|+||+.+ .....+.++++|||||+| + +.... ...++ ..+.+
T Consensus 683 v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll----~~~~~~~~l~lvIiDEaH-~-~g~~~-~~~l~----~l~~~ 751 (1151)
T 2eyq_A 683 IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL----QSDVKFKDLGLLIVDEEH-R-FGVRH-KERIK----AMRAN 751 (1151)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH----HSCCCCSSEEEEEEESGG-G-SCHHH-HHHHH----HHHTT
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH----hCCccccccceEEEechH-h-cChHH-HHHHH----HhcCC
Confidence 222222111111 11134689999999755 334578899999999999 3 33322 22222 22335
Q ss_pred cEEEEEecccChHHHHhhccCCCeee---cC-CCCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHH
Q 014006 151 LKILITSATLDGEKVSKFFSNCPTLN---VP-GKLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDDI 226 (432)
Q Consensus 151 ~~ii~~SAT~~~~~~~~~~~~~~~i~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~ 226 (432)
.++++||||+.++.+...+....-.. .. ....++.......... .....+... ...+++++||||+++++
T Consensus 752 ~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~----~i~~~il~~--l~~g~qvlvf~~~v~~~ 825 (1151)
T 2eyq_A 752 VDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSM----VVREAILRE--ILRGGQVYYLYNDVENI 825 (1151)
T ss_dssp SEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHH----HHHHHHHHH--HTTTCEEEEECCCSSCH
T ss_pred CCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHH----HHHHHHHHH--HhcCCeEEEEECCHHHH
Confidence 89999999997776655444322221 11 1223344333222211 112222222 23568999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceee
Q 014006 227 EKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQY 306 (432)
Q Consensus 227 ~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~ 306 (432)
+.+++.|.+. .++..+..+||+|+.++|.++++.|++|+.+|||||+++++|+|+|++++||..+..
T Consensus 826 ~~l~~~L~~~--------~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~----- 892 (1151)
T 2eyq_A 826 QKAAERLAEL--------VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD----- 892 (1151)
T ss_dssp HHHHHHHHHH--------CTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTT-----
T ss_pred HHHHHHHHHh--------CCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCC-----
Confidence 9999999886 246789999999999999999999999999999999999999999999999965431
Q ss_pred cCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccc
Q 014006 307 NPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (432)
Q Consensus 307 ~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~ 348 (432)
+.+.++|.||+||+||. ++|.||.++++..
T Consensus 893 ------------~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 893 ------------HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp ------------SSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred ------------CCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 12556899999999998 6899999987653
No 46
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=6.4e-37 Score=326.72 Aligned_cols=264 Identities=14% Similarity=0.135 Sum_probs=174.3
Q ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCHHH-HHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhC---C----ccCC
Q 014006 8 QYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG---V----RLGE 79 (432)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT~-~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~---~----~~~~ 79 (432)
++|.++++.+.+|++++++||||||||+ +++.+.... ..+.++++++|+++|+.|+++.+.+... . .++.
T Consensus 59 ~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~~~--~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~ 136 (1054)
T 1gku_B 59 AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLA--LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGY 136 (1054)
T ss_dssp HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHH--TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEE
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHHh--hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEE
Confidence 8999999999999999999999999994 344333322 3467899999999999999999877653 3 3333
Q ss_pred eeeeeeeecc----cCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCC-HHHHHHHHHHHH-------hhh
Q 014006 80 EVGYAIRFED----RTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLN-TDILLGLVKRLV-------NLR 147 (432)
Q Consensus 80 ~~g~~~~~~~----~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~-~~~~~~~l~~~~-------~~~ 147 (432)
.+|....... .....++|+|+||++|.+.+.. +.++++|||||||+ +++ ...+..++..+- ...
T Consensus 137 ~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~-~l~~~~~~~~i~~~lgf~~~~~~~~~ 212 (1054)
T 1gku_B 137 YHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE---LGHFDFIFVDDVDA-ILKASKNVDKLLHLLGFHYDLKTKSW 212 (1054)
T ss_dssp CCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT---SCCCSEEEESCHHH-HHTSTHHHHHHHHHTTEEEETTTTEE
T ss_pred EeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH---hccCCEEEEeChhh-hhhccccHHHHHHHhCcchhhhhhhc
Confidence 4442222110 1112289999999999987654 77999999999994 444 122222222221 011
Q ss_pred cCCcEEEEEecccChHH--HHhhccCCCeeecCCC---CCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 014006 148 ASKLKILITSATLDGEK--VSKFFSNCPTLNVPGK---LYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTG 222 (432)
Q Consensus 148 ~~~~~ii~~SAT~~~~~--~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t 222 (432)
+...|++++|||++... ...++.+...+.+... ...+...+........+ ..+.. ..++++||||+|
T Consensus 213 ~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~k~~~L-------~~ll~-~~~~~~LVF~~t 284 (1054)
T 1gku_B 213 VGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESISTL-------SSILE-KLGTGGIIYART 284 (1054)
T ss_dssp EECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCCCTTTT-------HHHHT-TSCSCEEEEESS
T ss_pred ccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEechhHHHHH-------HHHHh-hcCCCEEEEEcC
Confidence 33578999999996531 1122222212222221 12233333322222222 12221 225799999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEe----ecCcccccccCCe-EEEEe
Q 014006 223 QDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVS----TNIAETSLTVDGV-VYVID 297 (432)
Q Consensus 223 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilva----T~~~~~Gidi~~v-~~VI~ 297 (432)
+++|+.++..|.+ . +.+..+||++. ++++.|++|+.+|||| |+++++|||+|+| ++||+
T Consensus 285 ~~~a~~l~~~L~~----------~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~ 348 (1054)
T 1gku_B 285 GEEAEEIYESLKN----------K-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVF 348 (1054)
T ss_dssp HHHHHHHHHTTTT----------S-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEE
T ss_pred HHHHHHHHHHHhh----------c-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEE
Confidence 9999999998865 2 67899999983 5677899999999999 9999999999995 99999
Q ss_pred CCcc
Q 014006 298 CGYV 301 (432)
Q Consensus 298 ~~~~ 301 (432)
+|+|
T Consensus 349 ~~~P 352 (1054)
T 1gku_B 349 VGCP 352 (1054)
T ss_dssp ESCC
T ss_pred eCCC
Confidence 9999
No 47
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3e-35 Score=296.56 Aligned_cols=307 Identities=16% Similarity=0.153 Sum_probs=207.8
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HH-HHHHHhhcCCCCCcEEEecccchhhhHHHHHHH---HHHhCCccCCe
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEE 80 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~-~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~---~~~~~~~~~~~ 80 (432)
-+..|...+..+.+|+ +..++||+||| ++ +|.++... .+..++++.|+++||.|.++.+ .+.++.+++..
T Consensus 84 pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL---~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i 158 (844)
T 1tf5_A 84 PFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLN 158 (844)
T ss_dssp CCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred CcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 3678888999999999 88999999999 44 44443322 3557999999999999988765 45567777666
Q ss_pred eeeeeeecccCCCCceEEEcCHHHH-HHHHhcC-------CCCCCCcEEEEeCCCcCCC-CHH--------------HHH
Q 014006 81 VGYAIRFEDRTSERTLIKYLTDGVL-LREILSN-------PDLSPYSVIILDEAHERSL-NTD--------------ILL 137 (432)
Q Consensus 81 ~g~~~~~~~~~~~~~~i~v~T~~~l-~~~l~~~-------~~l~~~~~vViDE~h~~~~-~~~--------------~~~ 137 (432)
+|..........-.++|+|+|||+| .+++... ..+.++.++|||||| +++ |.. .+.
T Consensus 159 ~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD-~mLiDea~tplIisg~~~~~~~~~ 237 (844)
T 1tf5_A 159 LNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVD-SILIDEARTPLIISGQAAKSTKLY 237 (844)
T ss_dssp CTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHH-HHHTTTTTCEEEEEEEEECCCHHH
T ss_pred eCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchh-hhhhhccccchhhcCCcccchhHH
Confidence 6633222222223589999999999 5555432 257899999999999 554 542 123
Q ss_pred HHHHHHHhhhc---------CCcEEE-----------------EEecccCh--HHH-----H-hhcc-CCCee-------
Q 014006 138 GLVKRLVNLRA---------SKLKIL-----------------ITSATLDG--EKV-----S-KFFS-NCPTL------- 175 (432)
Q Consensus 138 ~~l~~~~~~~~---------~~~~ii-----------------~~SAT~~~--~~~-----~-~~~~-~~~~i------- 175 (432)
..+..+....+ +..|+. ++|||.+. ..+ + .+|. +...+
T Consensus 238 ~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ 317 (844)
T 1tf5_A 238 VQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVV 317 (844)
T ss_dssp HHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEE
T ss_pred HHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeE
Confidence 33566666554 346776 88999753 111 1 1221 11111
Q ss_pred ecC---CC-----CC--------------------------------------------------------ceeEEeCCC
Q 014006 176 NVP---GK-----LY--------------------------------------------------------PVEILHSKE 191 (432)
Q Consensus 176 ~~~---~~-----~~--------------------------------------------------------~~~~~~~~~ 191 (432)
.++ ++ .+ ...+...+.
T Consensus 318 ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPt 397 (844)
T 1tf5_A 318 IVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPT 397 (844)
T ss_dssp EBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCC
T ss_pred EeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecC
Confidence 000 00 00 000000000
Q ss_pred CC---------c--chHHHHHHHHHHHHhc--CCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCC
Q 014006 192 RP---------T--SYLESALKTAIDIHVR--EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLP 258 (432)
Q Consensus 192 ~~---------~--~~~~~~~~~~~~~~~~--~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~ 258 (432)
.. . .........+...... ..+.++||||+|++.++.++..|.. .++.+..+||++.
T Consensus 398 n~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~----------~gi~~~vLhg~~~ 467 (844)
T 1tf5_A 398 NRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKN----------KGIPHQVLNAKNH 467 (844)
T ss_dssp SSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHT----------TTCCCEEECSSCH
T ss_pred CCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH----------CCCCEEEeeCCcc
Confidence 00 0 0112222223322211 2356899999999999999999987 4788889999999
Q ss_pred HHHHhccCCCCCCCccEEEEeecCcccccccC--------CeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhc
Q 014006 259 PEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD--------GVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVG 330 (432)
Q Consensus 259 ~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~--------~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~G 330 (432)
+.+|..+.++++.| .|+||||+++||+||+ ++.+||++++|. |...|.||+|
T Consensus 468 ~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~------------------s~r~y~hr~G 527 (844)
T 1tf5_A 468 EREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHE------------------SRRIDNQLRG 527 (844)
T ss_dssp HHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCS------------------SHHHHHHHHT
T ss_pred HHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCC------------------CHHHHHhhcC
Confidence 99998888888777 5999999999999999 899999999866 7779999999
Q ss_pred ccCCC-CCCeEEEecCccc
Q 014006 331 RAGRT-RPGKCYRLYPSTV 348 (432)
Q Consensus 331 RaGR~-~~G~~~~l~~~~~ 348 (432)
|+||. .+|.++.+++.++
T Consensus 528 RTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 528 RSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp TSSGGGCCEEEEEEEETTS
T ss_pred ccccCCCCCeEEEEecHHH
Confidence 99999 7999999987665
No 48
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=8.2e-36 Score=295.30 Aligned_cols=294 Identities=18% Similarity=0.176 Sum_probs=202.4
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCc-cCCeee
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR-LGEEVG 82 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~-~~~~~g 82 (432)
+.++++|.++++.+.+++++++.+|||+|||.....++... +.++++++|+++|+.|..+++.+ ++.. ++...|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~~v~~~~g 166 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSG 166 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGG-GCGGGEEEBSS
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHh-CCCcceEEECC
Confidence 57899999999999999999999999999994443333333 46899999999999999999877 6655 444433
Q ss_pred eeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccCh
Q 014006 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (432)
Q Consensus 83 ~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~ 162 (432)
......+|+++|++.+...+.. ...++++|||||+| +..+..+. .+....+ ..+++++|||+..
T Consensus 167 -------~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~liIvDEaH-~~~~~~~~-----~~~~~~~-~~~~l~lSATp~~ 230 (472)
T 2fwr_A 167 -------RIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVH-HLPAESYV-----QIAQMSI-APFRLGLTATFER 230 (472)
T ss_dssp -------SCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEETGG-GTTSTTTH-----HHHHTCC-CSEEEEEESCCCC
T ss_pred -------CcCCcCCEEEEEcHHHHHHHHH--hcCCCCEEEEECCc-CCCChHHH-----HHHHhcC-CCeEEEEecCccC
Confidence 1223578999999998766532 12468999999999 55554432 2333344 3789999999962
Q ss_pred H-----HHHhhccCC----CeeecCCC-CCceeE--EeCC----------------------------------------
Q 014006 163 E-----KVSKFFSNC----PTLNVPGK-LYPVEI--LHSK---------------------------------------- 190 (432)
Q Consensus 163 ~-----~~~~~~~~~----~~i~~~~~-~~~~~~--~~~~---------------------------------------- 190 (432)
. .+..+++.. ........ ..+... ....
T Consensus 231 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 310 (472)
T 2fwr_A 231 EDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMAS 310 (472)
T ss_dssp TTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTT
T ss_pred CCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHh
Confidence 1 133333210 00000000 000000 0000
Q ss_pred ---CC-Ccch------------HHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEec
Q 014006 191 ---ER-PTSY------------LESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLH 254 (432)
Q Consensus 191 ---~~-~~~~------------~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h 254 (432)
.. .... .......+..+.....++++||||++++.++.+++.|. +..+|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~---------------~~~~~ 375 (472)
T 2fwr_A 311 GYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL---------------IPAIT 375 (472)
T ss_dssp CCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT---------------CCBCC
T ss_pred ccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC---------------cceee
Confidence 00 0000 00122334444444567899999999999999988773 33599
Q ss_pred CCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCC
Q 014006 255 GSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGR 334 (432)
Q Consensus 255 ~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR 334 (432)
|+++.++|.++++.|++|..+|||||+++++|+|+|++++||+++.+. |...|.||+||+||
T Consensus 376 g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~------------------s~~~~~Q~~GR~~R 437 (472)
T 2fwr_A 376 HRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSG------------------SAREYIQRLGRILR 437 (472)
T ss_dssp SSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSS------------------CCHHHHHHHHHSBC
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCC------------------CHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999977543 66799999999999
Q ss_pred CCCC----eEEEecCccchhh
Q 014006 335 TRPG----KCYRLYPSTVYHD 351 (432)
Q Consensus 335 ~~~G----~~~~l~~~~~~~~ 351 (432)
.++| .+|.++++...+.
T Consensus 438 ~g~~k~~~~i~~lv~~~t~ee 458 (472)
T 2fwr_A 438 PSKGKKEAVLYELISRGTGEV 458 (472)
T ss_dssp CCTTTCCEEEEEEEECSCC--
T ss_pred CCCCCceEEEEEEEeCCCchH
Confidence 9766 4666776655443
No 49
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.7e-35 Score=295.97 Aligned_cols=302 Identities=15% Similarity=0.112 Sum_probs=197.3
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCC---ccCCee
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV---RLGEEV 81 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~---~~~~~~ 81 (432)
..+++|.++++.+.++++.++++|||||||..+..++.......+.++++++|+++|+.|.++++.+.... .+....
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~ 192 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEe
Confidence 56889999999999999999999999999944333333221123449999999999999999998655322 112222
Q ss_pred eeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccC
Q 014006 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (432)
Q Consensus 82 g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~ 161 (432)
|. ...........+|+++|++.+.+. ....+.++++|||||+| +... .. +..++...+...++++||||++
T Consensus 193 ~~-~~~~~~~~~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H-~~~~-~~----~~~il~~~~~~~~~l~lSATp~ 263 (510)
T 2oca_A 193 GG-ASKDDKYKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECH-LATG-KS----ISSIISGLNNCMFKFGLSGSLR 263 (510)
T ss_dssp GG-CCTTGGGCTTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGG-GCCH-HH----HHHHGGGCTTCCEEEEEESCGG
T ss_pred cC-CccccccccCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCc-CCCc-cc----HHHHHHhcccCcEEEEEEeCCC
Confidence 21 111111236789999999976432 11256789999999999 4433 22 3445454444579999999995
Q ss_pred hHH-----HHhhccCCCeeecCCC-------CCceeE--EeCCCCC--------cchHH---------HHHHHHHHH---
Q 014006 162 GEK-----VSKFFSNCPTLNVPGK-------LYPVEI--LHSKERP--------TSYLE---------SALKTAIDI--- 207 (432)
Q Consensus 162 ~~~-----~~~~~~~~~~i~~~~~-------~~~~~~--~~~~~~~--------~~~~~---------~~~~~~~~~--- 207 (432)
... +..+++ .....+... ..+... ....... ..+.. .....+...
T Consensus 264 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 342 (510)
T 2oca_A 264 DGKANIMQYVGMFG-EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIK 342 (510)
T ss_dssp GCSSCHHHHHHHHC-SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcccHHHhHHhhC-CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHH
Confidence 432 222332 222222211 011111 0000000 11111 011111111
Q ss_pred HhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEee-cCcccc
Q 014006 208 HVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST-NIAETS 286 (432)
Q Consensus 208 ~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT-~~~~~G 286 (432)
.....+++++||++ .++++.+++.|.+. +..+..+||+++.++|.++++.|++|+.+||||| +++++|
T Consensus 343 ~~~~~~~~~ivf~~-~~~~~~l~~~L~~~----------~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~G 411 (510)
T 2oca_A 343 LAQKDENAFVMFKH-VSHGKAIFDLIKNE----------YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTG 411 (510)
T ss_dssp HHTTTCEEEEEESS-HHHHHHHHHHHHTT----------CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHS
T ss_pred HHhcCCCeEEEEec-HHHHHHHHHHHHHc----------CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcc
Confidence 11223446666666 88899899988763 3478899999999999999999999999999999 999999
Q ss_pred cccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCCCe-EEEecC
Q 014006 287 LTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGK-CYRLYP 345 (432)
Q Consensus 287 idi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~-~~~l~~ 345 (432)
+|+|++++||.++.+. |..+|+||+||+||.++|. ++.+++
T Consensus 412 iDip~v~~vi~~~~~~------------------s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 412 ISVKNLHHVVLAHGVK------------------SKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCCCSEEEEEESSCCC------------------SCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccccCcEEEEeCCCC------------------CHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999977643 6669999999999995543 555554
No 50
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=5e-34 Score=286.92 Aligned_cols=307 Identities=14% Similarity=0.090 Sum_probs=189.8
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHH---HHHhCCccCCee
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEEV 81 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~---~~~~~~~~~~~~ 81 (432)
-+..|...+..+.+|+ +..++|||||| +++.+++... ..+..++++.||++||.|.++.+ .+.++.+++..+
T Consensus 75 p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~--l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~ 150 (853)
T 2fsf_A 75 HFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNA--LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINL 150 (853)
T ss_dssp CCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHH--TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred CChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHH--HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3677888888889998 88999999999 4433333222 13557999999999999988765 455667776666
Q ss_pred eeeeeecccCCCCceEEEcCHHHH-HHHHhcC-------CCCCCCcEEEEeCCCcCCC-CHH---------------HHH
Q 014006 82 GYAIRFEDRTSERTLIKYLTDGVL-LREILSN-------PDLSPYSVIILDEAHERSL-NTD---------------ILL 137 (432)
Q Consensus 82 g~~~~~~~~~~~~~~i~v~T~~~l-~~~l~~~-------~~l~~~~~vViDE~h~~~~-~~~---------------~~~ 137 (432)
|............++|+|+|||++ .+++... ..+.++.++|+|||| +++ +.. +..
T Consensus 151 GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD-~mLiD~a~tpLIiSg~~~~~~~~y~ 229 (853)
T 2fsf_A 151 PGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVD-SILIDEARTPLIISGPAEDSSEMYK 229 (853)
T ss_dssp TTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHH-HHTTTTTTCEEEEEEC---------
T ss_pred CCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchH-HHHHhcCcccccccCCCccchhHHH
Confidence 633222222223589999999999 6777543 356899999999999 555 432 222
Q ss_pred HHHHHHHhhhcC--------------------CcEEE------------------------EEecccCh--HHHH-----
Q 014006 138 GLVKRLVNLRAS--------------------KLKIL------------------------ITSATLDG--EKVS----- 166 (432)
Q Consensus 138 ~~l~~~~~~~~~--------------------~~~ii------------------------~~SAT~~~--~~~~----- 166 (432)
. +..+....+. ..|+. ++|||.+. ..+.
T Consensus 230 ~-i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A 308 (853)
T 2fsf_A 230 R-VNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRA 308 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred H-HHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHH
Confidence 2 3333333321 23443 78888643 1110
Q ss_pred -hhcc--------CCCee-----------------------------ecCCCCC--------------------------
Q 014006 167 -KFFS--------NCPTL-----------------------------NVPGKLY-------------------------- 182 (432)
Q Consensus 167 -~~~~--------~~~~i-----------------------------~~~~~~~-------------------------- 182 (432)
.+|. +..++ .+.....
T Consensus 309 ~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~t 388 (853)
T 2fsf_A 309 HALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADT 388 (853)
T ss_dssp ------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCC
T ss_pred HHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchh
Confidence 1111 00100 0000000
Q ss_pred ---------ceeEEeCCCC-----------CcchHHHHHHHHHHHHh--cCCCCCEEEEeCCHHHHHHHHHHHHHHHhhc
Q 014006 183 ---------PVEILHSKER-----------PTSYLESALKTAIDIHV--REPEGDVLIFMTGQDDIEKLVSKLEDKIRSL 240 (432)
Q Consensus 183 ---------~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~--~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~ 240 (432)
.+.+...+.. ...........+..... ...+.++||||+|++.++.++..|.+.
T Consensus 389 e~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~---- 464 (853)
T 2fsf_A 389 EAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKA---- 464 (853)
T ss_dssp CHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHC----
Confidence 0000000000 00011223333333221 245679999999999999999999884
Q ss_pred cCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCC-----------------------------
Q 014006 241 DEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG----------------------------- 291 (432)
Q Consensus 241 ~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~----------------------------- 291 (432)
++.+..+||++...++..+.++|+.| .|+||||+++||+||+.
T Consensus 465 ------gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (853)
T 2fsf_A 465 ------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVR 536 (853)
T ss_dssp ------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHH
T ss_pred ------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhh
Confidence 78888999999888888889999998 69999999999999997
Q ss_pred ---e-----EEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccc
Q 014006 292 ---V-----VYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (432)
Q Consensus 292 ---v-----~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~ 348 (432)
| .+||++++|. |...|.||+||+||. .+|.+..+++.++
T Consensus 537 ~~~V~~~GGl~VI~te~pe------------------s~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 537 HDAVLEAGGLHIIGTERHE------------------SRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHTTSEEEEESSCCS------------------SHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhHHHhcCCcEEEEccCCC------------------CHHHHHhhccccccCCCCeeEEEEecccH
Confidence 4 7999998865 777999999999999 7899998886554
No 51
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=9.6e-33 Score=277.91 Aligned_cols=306 Identities=18% Similarity=0.148 Sum_probs=208.5
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH--HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHH---HHHhCCccCCe
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV---AQELGVRLGEE 80 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT--~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~---~~~~~~~~~~~ 80 (432)
-+..|...+..+.+|+ +..++||+||| +.+|.++..+ .+..++++.|+++||.|.++.+ .+.+|.+++..
T Consensus 112 P~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL---~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i 186 (922)
T 1nkt_A 112 PFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL---AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVI 186 (922)
T ss_dssp CCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT---TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH---hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 3677888888888988 88999999999 3444444333 2457999999999999988765 45667777666
Q ss_pred eeeeeeecccCCCCceEEEcCHHHH-HHHHhcC-------CCCCCCcEEEEeCCCcCCC-C---------------HHHH
Q 014006 81 VGYAIRFEDRTSERTLIKYLTDGVL-LREILSN-------PDLSPYSVIILDEAHERSL-N---------------TDIL 136 (432)
Q Consensus 81 ~g~~~~~~~~~~~~~~i~v~T~~~l-~~~l~~~-------~~l~~~~~vViDE~h~~~~-~---------------~~~~ 136 (432)
+|..........-.++|+|+||++| .+++... ..+.++.++|||||| +++ | +++.
T Consensus 187 ~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaD-smLiDeartPLiiSg~~~~~~~~y 265 (922)
T 1nkt_A 187 LATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVD-SILIDEARTPLIISGPADGASNWY 265 (922)
T ss_dssp CTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHH-HHHTTGGGSCEEEEEECCCCHHHH
T ss_pred eCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChH-HHHHhcCccceeecCCCCcchhHH
Confidence 6633222222223589999999999 6776543 357889999999999 555 4 2444
Q ss_pred HHHHHHHHhhhc---------CCcEEE-----------------EEecccCh--HHH-----H-hhcc--------CCCe
Q 014006 137 LGLVKRLVNLRA---------SKLKIL-----------------ITSATLDG--EKV-----S-KFFS--------NCPT 174 (432)
Q Consensus 137 ~~~l~~~~~~~~---------~~~~ii-----------------~~SAT~~~--~~~-----~-~~~~--------~~~~ 174 (432)
.. +..+....+ ++.|+. ++|||.+. ..+ + .+|. +..+
T Consensus 266 ~~-i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~v 344 (922)
T 1nkt_A 266 TE-FARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEV 344 (922)
T ss_dssp HH-HHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCE
T ss_pred HH-HHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCce
Confidence 44 566666554 457888 89999753 111 1 1221 1111
Q ss_pred eecC---CCCC-------------------------------------------------------------ceeEEeCC
Q 014006 175 LNVP---GKLY-------------------------------------------------------------PVEILHSK 190 (432)
Q Consensus 175 i~~~---~~~~-------------------------------------------------------------~~~~~~~~ 190 (432)
+.++ ++.. .+++...+
T Consensus 345 viVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IP 424 (922)
T 1nkt_A 345 LIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIP 424 (922)
T ss_dssp EEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECC
T ss_pred EEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeC
Confidence 1111 0000 00000000
Q ss_pred CCC-----------cchHHHHHHHHHHHHh--cCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCC
Q 014006 191 ERP-----------TSYLESALKTAIDIHV--REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSL 257 (432)
Q Consensus 191 ~~~-----------~~~~~~~~~~~~~~~~--~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l 257 (432)
... ..........+..... ...+.++||||+|++.++.++..|.+. ++.+..+||+.
T Consensus 425 tn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~----------Gi~~~vLnak~ 494 (922)
T 1nkt_A 425 TNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKR----------RIPHNVLNAKY 494 (922)
T ss_dssp CSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHT----------TCCCEEECSSC
T ss_pred CCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC----------CCCEEEecCCh
Confidence 000 0001222322322221 134568999999999999999999884 78888999999
Q ss_pred CHHHHhccCCCCCCCccEEEEeecCcccccccCCe---------------------------------------------
Q 014006 258 PPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGV--------------------------------------------- 292 (432)
Q Consensus 258 ~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v--------------------------------------------- 292 (432)
...++..+.++|+.| .|+||||+++||+||+.+
T Consensus 495 ~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (922)
T 1nkt_A 495 HEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAK 572 (922)
T ss_dssp HHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhh
Confidence 888888888999988 699999999999999964
Q ss_pred -------EEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccc
Q 014006 293 -------VYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (432)
Q Consensus 293 -------~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~ 348 (432)
.+||++++|. |...|.||+||+||. .+|.+..+++.++
T Consensus 573 ~V~~~GGlhVI~te~pe------------------s~riy~qr~GRTGRqGdpG~s~fflSleD 618 (922)
T 1nkt_A 573 EVIEAGGLYVLGTERHE------------------SRRIDNQLRGRSGRQGDPGESRFYLSLGD 618 (922)
T ss_dssp HHHHTTSEEEEECSCCS------------------SHHHHHHHHHTSSGGGCCEEEEEEEETTS
T ss_pred HHHhcCCcEEEeccCCC------------------CHHHHHHHhcccccCCCCeeEEEEechhH
Confidence 6999988765 777999999999999 7899998886554
No 52
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=4.2e-33 Score=283.10 Aligned_cols=301 Identities=15% Similarity=0.147 Sum_probs=177.6
Q ss_pred CchhhhHHHHHHHHhc-----CCEEEEEcCCCCCHHHHHHHHHhhc-CCC-------CCcEEEecccchhhhHHHH-HHH
Q 014006 4 LPILQYEETIVETVEQ-----NPVVVVIGETGSGKSTQLSQILHRH-GYT-------KSGIIGVTQPRRVAAVSVA-RRV 69 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~-----~~~~ii~apTGsGKT~~~~~~~~~~-~~~-------~~~~vl~~~P~~~l~~q~~-~~~ 69 (432)
..++.+|.++++.+.+ ++++++++|||||||..+..++... ... .+.++++++|+++|+.|.. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3578899999988765 4778999999999994433343322 112 5679999999999999998 444
Q ss_pred HHHhCCccCCeeeeeeeecccCCCCceEEEcCHHHHHHHHhc-----CCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHH
Q 014006 70 AQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILS-----NPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (432)
Q Consensus 70 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~-----~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~ 144 (432)
. .++...+... ........+|+++|++.+...... .....++++||+|||| +....+. ..++.++
T Consensus 257 ~-~~~~~~~~~~------~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH-~~~~~~~--~~~~~il 326 (590)
T 3h1t_A 257 T-PFGDARHKIE------GGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECH-RGSARDN--SNWREIL 326 (590)
T ss_dssp T-TTCSSEEECC------C--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHHHH
T ss_pred H-hcchhhhhhh------ccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCc-cccccch--HHHHHHH
Confidence 2 2332211111 123345689999999998876531 2245678999999999 5544321 2244455
Q ss_pred hhhcCCcEEEEEecccCh---HHHHhhccCCCeeecC-------CCCCceeEEe--CCC---------------------
Q 014006 145 NLRASKLKILITSATLDG---EKVSKFFSNCPTLNVP-------GKLYPVEILH--SKE--------------------- 191 (432)
Q Consensus 145 ~~~~~~~~ii~~SAT~~~---~~~~~~~~~~~~i~~~-------~~~~~~~~~~--~~~--------------------- 191 (432)
...+. .++++||||+.. .....+|+.. +.... +...|..... ...
T Consensus 327 ~~~~~-~~~l~lTATP~~~~~~~~~~~f~~~-~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (590)
T 3h1t_A 327 EYFEP-AFQIGMTATPLREDNRDTYRYFGNP-IYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPD 404 (590)
T ss_dssp HHSTT-SEEEEEESSCSCTTTHHHHHHSCSC-SEEECHHHHHHHTSSCCEEEEEEEETTCC-------------------
T ss_pred HhCCc-ceEEEeccccccccchhHHHHcCCc-eEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccccc
Confidence 55543 789999999853 2355566432 11110 1011111110 000
Q ss_pred ---CCcch---------HHHHHHHHHHHHh-cCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCC
Q 014006 192 ---RPTSY---------LESALKTAIDIHV-REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLP 258 (432)
Q Consensus 192 ---~~~~~---------~~~~~~~~~~~~~-~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~ 258 (432)
..... .....+.+..... ....+++||||+++++|+.+++.|.+........ ....+..+||+++
T Consensus 405 ~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~--~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 405 GEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRK--HPDYVARVTSEEG 482 (590)
T ss_dssp ----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTT--CTTSEEECSSTTH
T ss_pred ccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhcc--CCCeEEEEeCCCh
Confidence 00000 0111112222222 2455799999999999999999998764332111 1223677899875
Q ss_pred HHHHhccCCCCCCCccE---EEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC
Q 014006 259 PEMQVRVFSPPPPNCRR---FIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT 335 (432)
Q Consensus 259 ~~~r~~~~~~f~~g~~~---ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~ 335 (432)
++|.+++++|++|..+ |+|||+++++|+|+|++++||+++.+. |...|+||+||+||.
T Consensus 483 -~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~------------------s~~~~~Q~iGR~~R~ 543 (590)
T 3h1t_A 483 -KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVN------------------SMSEFKQIVGRGTRL 543 (590)
T ss_dssp -HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCC------------------CHHHHHHHHTTSCCC
T ss_pred -HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCC------------------ChHHHHHHHhhhccc
Confidence 4799999999998766 889999999999999999999876543 778999999999998
Q ss_pred CC
Q 014006 336 RP 337 (432)
Q Consensus 336 ~~ 337 (432)
++
T Consensus 544 ~~ 545 (590)
T 3h1t_A 544 RE 545 (590)
T ss_dssp BG
T ss_pred Cc
Confidence 54
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.96 E-value=2.7e-30 Score=273.89 Aligned_cols=314 Identities=12% Similarity=0.083 Sum_probs=202.8
Q ss_pred CCchhhhHHHHHHHHhc--CCEEEEEcCCCCCHHHHHHHHHhh-cCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCC
Q 014006 3 NLPILQYEETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHR-HGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE 79 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~--~~~~ii~apTGsGKT~~~~~~~~~-~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~ 79 (432)
.+.+++||.+++..+.. +..+++.++||+|||..+..++.. .......++++++|+ .|+.|..+.+.+.++..+..
T Consensus 151 ~~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v 229 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFAL 229 (968)
T ss_dssp SSCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEE
T ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEE
Confidence 35678999999988765 448899999999999444333332 222334589999999 89999999998888766544
Q ss_pred eeeeeeee----cccCCCCceEEEcCHHHHHHHHhcC--CCCCCCcEEEEeCCCcCCCCHHH----HHHHHHHHHhhhcC
Q 014006 80 EVGYAIRF----EDRTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTDI----LLGLVKRLVNLRAS 149 (432)
Q Consensus 80 ~~g~~~~~----~~~~~~~~~i~v~T~~~l~~~l~~~--~~l~~~~~vViDE~h~~~~~~~~----~~~~l~~~~~~~~~ 149 (432)
..|..... ........+|+++|++.+.+..... ....++++||||||| +..+... ....++.+.. .
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH-~~kn~~~~~s~~~~~l~~L~~---~ 305 (968)
T 3dmq_A 230 FDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAH-HLVWSEDAPSREYQAIEQLAE---H 305 (968)
T ss_dssp CCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSS-CCCCBTTBCCHHHHHHHHHHT---T
T ss_pred EccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhH-hhcCCCCcchHHHHHHHHHhh---c
Confidence 33311110 0122245789999999885321100 124578999999999 4432221 1222333322 2
Q ss_pred CcEEEEEecccChHH------HHhhcc-----------------------------CCC-----------ee--------
Q 014006 150 KLKILITSATLDGEK------VSKFFS-----------------------------NCP-----------TL-------- 175 (432)
Q Consensus 150 ~~~ii~~SAT~~~~~------~~~~~~-----------------------------~~~-----------~i-------- 175 (432)
..+++++|||+-... +-.++. +.. .+
T Consensus 306 ~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l 385 (968)
T 3dmq_A 306 VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPL 385 (968)
T ss_dssp CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTT
T ss_pred CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHH
Confidence 356999999983210 001100 000 00
Q ss_pred --------------------------------ecCC----CCCceeE---EeCCCC------------------------
Q 014006 176 --------------------------------NVPG----KLYPVEI---LHSKER------------------------ 192 (432)
Q Consensus 176 --------------------------------~~~~----~~~~~~~---~~~~~~------------------------ 192 (432)
.... ..+|... ......
T Consensus 386 ~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (968)
T 3dmq_A 386 LQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRAR 465 (968)
T ss_dssp GGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTH
T ss_pred HhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHh
Confidence 0000 0000000 000000
Q ss_pred -----------------CcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecC
Q 014006 193 -----------------PTSYLESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHG 255 (432)
Q Consensus 193 -----------------~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~ 255 (432)
...........+..+.....++++||||++++.++.++..|... .++.+..+||
T Consensus 466 ~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~---------~g~~~~~lhG 536 (968)
T 3dmq_A 466 DMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER---------EGIRAAVFHE 536 (968)
T ss_dssp HHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT---------TCCCEEEECT
T ss_pred hhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH---------cCCcEEEEeC
Confidence 00000123344444444567789999999999999999999853 4788999999
Q ss_pred CCCHHHHhccCCCCCCCc--cEEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccC
Q 014006 256 SLPPEMQVRVFSPPPPNC--RRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAG 333 (432)
Q Consensus 256 ~l~~~~r~~~~~~f~~g~--~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaG 333 (432)
+|+.++|.++++.|++|+ .+|||||+++++|+|+|++++||+++.|. +...|.||+||+|
T Consensus 537 ~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~------------------~~~~~~Q~~GR~~ 598 (968)
T 3dmq_A 537 GMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPF------------------NPDLLEQRIGRLD 598 (968)
T ss_dssp TSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCS------------------SHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCC------------------CHHHHHHHhhccc
Confidence 999999999999999998 99999999999999999999999987643 7789999999999
Q ss_pred CC-CCC--eEEEecCccc
Q 014006 334 RT-RPG--KCYRLYPSTV 348 (432)
Q Consensus 334 R~-~~G--~~~~l~~~~~ 348 (432)
|. +.| .+|.++.+..
T Consensus 599 R~Gq~~~v~v~~~~~~~t 616 (968)
T 3dmq_A 599 RIGQAHDIQIHVPYLEKT 616 (968)
T ss_dssp CSSSCSCCEEEEEEETTS
T ss_pred cCCCCceEEEEEecCCCh
Confidence 99 445 3455554443
No 54
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.96 E-value=3.5e-28 Score=217.53 Aligned_cols=172 Identities=41% Similarity=0.641 Sum_probs=147.2
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCC----CCCcEEEecccchhhhHHHHHHHHHHhCCccC
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGY----TKSGIIGVTQPRRVAAVSVARRVAQELGVRLG 78 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~----~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~ 78 (432)
.+|++++|+++++.+.+|+++++.||||||||+++..++..... ..+..++++.|+++++.|+++++.+.++..++
T Consensus 59 ~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 59 LLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT
T ss_pred cCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccC
Confidence 58999999999999999999999999999999766555443211 12348999999999999999999999998889
Q ss_pred CeeeeeeeecccCC-CCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 79 EEVGYAIRFEDRTS-ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 79 ~~~g~~~~~~~~~~-~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
..+|+....+.... .+++|+|+|||++++.+.. .+.++++||+||||++.++.++....++.+....++ .|+++||
T Consensus 139 ~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~-~~~il~S 215 (235)
T 3llm_A 139 KSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPE-VRIVLMS 215 (235)
T ss_dssp SSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTT-SEEEEEE
T ss_pred ceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCC-CeEEEEe
Confidence 99998777666554 6789999999999999876 489999999999997678999988888888887764 8999999
Q ss_pred cccChHHHHhhccCCCeeec
Q 014006 158 ATLDGEKVSKFFSNCPTLNV 177 (432)
Q Consensus 158 AT~~~~~~~~~~~~~~~i~~ 177 (432)
||++.+.+++||.+++++.+
T Consensus 216 AT~~~~~~~~~~~~~pvi~v 235 (235)
T 3llm_A 216 ATIDTSMFCEYFFNCPIIEV 235 (235)
T ss_dssp CSSCCHHHHHHTTSCCCEEC
T ss_pred cCCCHHHHHHHcCCCCEEeC
Confidence 99999999999998887653
No 55
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.95 E-value=1.8e-27 Score=250.54 Aligned_cols=313 Identities=10% Similarity=0.003 Sum_probs=194.1
Q ss_pred chhhhHHHHHHHHhc--------------CCEEEEEcCCCCCHHHHHHHHHhhcCC-CCCcEEEecccchhhhHHHHHHH
Q 014006 5 PILQYEETIVETVEQ--------------NPVVVVIGETGSGKSTQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRV 69 (432)
Q Consensus 5 p~~~~q~~i~~~i~~--------------~~~~ii~apTGsGKT~~~~~~~~~~~~-~~~~~vl~~~P~~~l~~q~~~~~ 69 (432)
....+|.++++.+.+ +++.+++++||||||..+..++..... ....++++++|+++|+.|..+.+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f 350 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEY 350 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHH
Confidence 356788888887654 367899999999999333333333222 23359999999999999998887
Q ss_pred HHHhCCccCCeeeeeeee--cccCCCCceEEEcCHHHHHHHHhcCC---CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHH
Q 014006 70 AQELGVRLGEEVGYAIRF--EDRTSERTLIKYLTDGVLLREILSNP---DLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (432)
Q Consensus 70 ~~~~~~~~~~~~g~~~~~--~~~~~~~~~i~v~T~~~l~~~l~~~~---~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~ 144 (432)
.+.....+.. +..... ........+|+|+|++++...+.... .+.+..+||+|||| |+...+. .+.+.
T Consensus 351 ~~f~~~~v~~--~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAH-rs~~~~~----~~~I~ 423 (1038)
T 2w00_A 351 QRFSPDSVNG--SENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECH-RSQFGEA----QKNLK 423 (1038)
T ss_dssp HTTSTTCSSS--SCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCC-TTHHHHH----HHHHH
T ss_pred HHhccccccc--ccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccc-hhcchHH----HHHHH
Confidence 6543321111 101000 01113468999999999998765432 35678899999999 6654443 34445
Q ss_pred hhhcCCcEEEEEecccCh-------HHHHhhccCCCeeec-------CCCCCceeEEeCCCC------------------
Q 014006 145 NLRASKLKILITSATLDG-------EKVSKFFSNCPTLNV-------PGKLYPVEILHSKER------------------ 192 (432)
Q Consensus 145 ~~~~~~~~ii~~SAT~~~-------~~~~~~~~~~~~i~~-------~~~~~~~~~~~~~~~------------------ 192 (432)
...++ .++++||||+.. .....+|++. +... .+-..|+...+....
T Consensus 424 ~~~p~-a~~lgfTATP~~~~~~~~~~~t~~~FG~~-i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i 501 (1038)
T 2w00_A 424 KKFKR-YYQFGFTGTPIFPENALGSETTASVFGRE-LHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAA 501 (1038)
T ss_dssp HHCSS-EEEEEEESSCCCSTTCTTSCCHHHHHCSE-EEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHT
T ss_pred HhCCc-ccEEEEeCCccccccchhhhHHHHHhCCe-eEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHH
Confidence 55554 899999999853 1344555431 1110 122233333222100
Q ss_pred -------CcchHHHHHHHHHHHHhc--------CCCCCEEEEeCCHHHHHHHHHHHHHHHhhcc--CCCCCCeEE-EEec
Q 014006 193 -------PTSYLESALKTAIDIHVR--------EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLD--EGSCMDAVI-LPLH 254 (432)
Q Consensus 193 -------~~~~~~~~~~~~~~~~~~--------~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~--~~~~~~~~~-~~~h 254 (432)
....+......+...+.. ..+++++|||+|+..|..+++.|.+...... .....+..+ ..+|
T Consensus 502 ~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s 581 (1038)
T 2w00_A 502 ENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFS 581 (1038)
T ss_dssp CSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEe
Confidence 001112222222222211 1345899999999999999999987642210 000122334 3455
Q ss_pred CC----------C----------CH-----------------------------HHHhccCCCCCCCccEEEEeecCccc
Q 014006 255 GS----------L----------PP-----------------------------EMQVRVFSPPPPNCRRFIVSTNIAET 285 (432)
Q Consensus 255 ~~----------l----------~~-----------------------------~~r~~~~~~f~~g~~~ilvaT~~~~~ 285 (432)
++ + ++ ++|..++++|++|.++|||+|+++.+
T Consensus 582 ~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~llt 661 (1038)
T 2w00_A 582 FAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLT 661 (1038)
T ss_dssp CCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSS
T ss_pred CCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHh
Confidence 42 2 22 14778888999999999999999999
Q ss_pred ccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCCC-----CeEEEecC
Q 014006 286 SLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTRP-----GKCYRLYP 345 (432)
Q Consensus 286 Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~-----G~~~~l~~ 345 (432)
|+|+|.+. |+..|. |.+...|+||+||+||..+ |.++.+..
T Consensus 662 GfDiP~l~-tlylDk------------------pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 662 GFDAPTLN-TLFVDK------------------NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp SCCCTTEE-EEEEES------------------CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred CcCccccc-EEEEcc------------------CCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 99999995 555443 3466789999999999843 55666554
No 56
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.95 E-value=4e-28 Score=241.88 Aligned_cols=309 Identities=15% Similarity=0.102 Sum_probs=189.6
Q ss_pred chhhhHHHHHHHH----hcCCEEEEEcCCCCCHHHHHHHHHhhc-CCCCCcEEEecccchhhhHHHHHHHHHHhC-CccC
Q 014006 5 PILQYEETIVETV----EQNPVVVVIGETGSGKSTQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELG-VRLG 78 (432)
Q Consensus 5 p~~~~q~~i~~~i----~~~~~~ii~apTGsGKT~~~~~~~~~~-~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~-~~~~ 78 (432)
.+++||.+.++.+ ..+...++..+||+|||..+..++... ......++++++|+ .++.|..+.+.+... ..+.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~~~~v~ 115 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKFAPHLRFA 115 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHCTTSCEE
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHHCCCceEE
Confidence 4789999998876 467888999999999994443333322 22334578899994 577888888877653 2222
Q ss_pred CeeeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q 014006 79 EEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (432)
Q Consensus 79 ~~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SA 158 (432)
...|.. ........+|+++|++.+.+... ....++++||+|||| +..+.... ..+.+.. .+ ..+.+++||
T Consensus 116 ~~~g~~---~~~~~~~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH-~~kn~~~~--~~~~l~~-l~-~~~~l~LTa 185 (500)
T 1z63_A 116 VFHEDR---SKIKLEDYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQ-NIKNPQTK--IFKAVKE-LK-SKYRIALTG 185 (500)
T ss_dssp ECSSST---TSCCGGGSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGG-GGSCTTSH--HHHHHHT-SC-EEEEEEECS
T ss_pred EEecCc---hhccccCCcEEEeeHHHHhccch--hcCCCcCEEEEeCcc-ccCCHhHH--HHHHHHh-hc-cCcEEEEec
Confidence 111211 11222457899999998864432 123468899999999 44433211 1122222 22 257899999
Q ss_pred ccChHHHH------hhcc---------------------------------CCCeeecCC------CCCceeE---EeCC
Q 014006 159 TLDGEKVS------KFFS---------------------------------NCPTLNVPG------KLYPVEI---LHSK 190 (432)
Q Consensus 159 T~~~~~~~------~~~~---------------------------------~~~~i~~~~------~~~~~~~---~~~~ 190 (432)
|+-.+.+. .|+. .+-++.... ...|... .+..
T Consensus 186 TP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~ 265 (500)
T 1z63_A 186 TPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCN 265 (500)
T ss_dssp SCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcC
Confidence 98332111 1110 011111000 0111111 1111
Q ss_pred CCCcc--hHH-------------------------------------------------HHHHHHHHHHh--cCCCCCEE
Q 014006 191 ERPTS--YLE-------------------------------------------------SALKTAIDIHV--REPEGDVL 217 (432)
Q Consensus 191 ~~~~~--~~~-------------------------------------------------~~~~~~~~~~~--~~~~~~~l 217 (432)
..... ... .....+..+.. ...+.++|
T Consensus 266 l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~l 345 (500)
T 1z63_A 266 LTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIA 345 (500)
T ss_dssp CCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEE
Confidence 00000 000 00111111111 23567999
Q ss_pred EEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCC-ccE-EEEeecCcccccccCCeEEE
Q 014006 218 IFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRR-FIVSTNIAETSLTVDGVVYV 295 (432)
Q Consensus 218 vF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g-~~~-ilvaT~~~~~Gidi~~v~~V 295 (432)
||++++..++.++..|... .+..+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|++++++|
T Consensus 346 vF~~~~~~~~~l~~~l~~~---------~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~v 416 (500)
T 1z63_A 346 IFTQFVDMGKIIRNIIEKE---------LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRV 416 (500)
T ss_dssp EECSCHHHHHHHHHHHHHH---------HTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEE
T ss_pred EEEehHHHHHHHHHHHHHh---------hCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEE
Confidence 9999999999999999874 255677899999999999999999988 454 79999999999999999999
Q ss_pred EeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC---CCeEEEecCccchhh
Q 014006 296 IDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHD 351 (432)
Q Consensus 296 I~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~---~G~~~~l~~~~~~~~ 351 (432)
|+++.+. +...+.||+||++|.+ +..+|.++++...+.
T Consensus 417 i~~d~~~------------------~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee 457 (500)
T 1z63_A 417 IHFDRWW------------------NPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 457 (500)
T ss_dssp EESSCCS------------------CC---CHHHHTTTTTTTTSCEEEEEEEETTSHHH
T ss_pred EEeCCCC------------------CcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHH
Confidence 9987643 5557889999999983 345677777665443
No 57
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=7.8e-29 Score=217.71 Aligned_cols=172 Identities=19% Similarity=0.232 Sum_probs=141.9
Q ss_pred HHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeec
Q 014006 202 KTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTN 281 (432)
Q Consensus 202 ~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~ 281 (432)
..+..+.....++++||||+|+++++.++..|... ++.+.++||+|++++|..+++.|++|..+|||||+
T Consensus 20 ~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 20 EVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL----------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD 89 (212)
T ss_dssp HHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH----------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT
T ss_pred HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc----------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC
Confidence 33444444456789999999999999999999874 77899999999999999999999999999999999
Q ss_pred CcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccch-----------
Q 014006 282 IAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVY----------- 349 (432)
Q Consensus 282 ~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~----------- 349 (432)
++++|+|+|++++||++|+|. |..+|+||+||+||. ++|.|+.++++.+.
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~------------------~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 151 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPD------------------RAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 151 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCS------------------SHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHS
T ss_pred hhhcCCCCccCcEEEECCCCc------------------CHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhc
Confidence 999999999999999998765 778999999999999 58999999988772
Q ss_pred ---hhcCCCCCCCccccCCchHHHHHHhhCCCCCCccccc-----cCCCCCCHHHHHHHHHHH
Q 014006 350 ---HDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKF-----DFLDPPSSESLEDALKQL 404 (432)
Q Consensus 350 ---~~~~~~~~~~~i~~~~l~~~~l~l~~~~~~~~~~~~~-----~~~~~p~~~~l~~~~~~L 404 (432)
.. +.....+++.+..+..+++.++.+...+ ...| +++++|+.+.+..|+..|
T Consensus 152 ~~~~~-~~~~~~~ei~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 152 RRFKR-VNPPTPEEVLEAKWRHLLARLARVPEKD--YRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp SCCEE-CCCCCHHHHHHHHHHHHHHHHTTSCHHH--HTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCee-cCCCCHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 22 4455566777778888888888876544 3334 567888888888888765
No 58
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.94 E-value=1.2e-25 Score=221.91 Aligned_cols=165 Identities=18% Similarity=0.146 Sum_probs=118.1
Q ss_pred cEEEEEecccChH--HHHhhccCCCeeecCCCCCceeEEe---CCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHH
Q 014006 151 LKILITSATLDGE--KVSKFFSNCPTLNVPGKLYPVEILH---SKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (432)
Q Consensus 151 ~~ii~~SAT~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~ 225 (432)
.++.+||+|+..+ .+.+.+ +..++.++.......... ......+........+...+ ..+.++||||+|++.
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY-~l~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~--~~gqpVLVFt~S~e~ 486 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVY-GMEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRY--KKGQPVLVGTTSIEK 486 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHS-CCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH--HHTCCEEEEESSHHH
T ss_pred hHHeEECCCCchHHHHHHHHh-CCeEEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHh--hCCCCEEEEECCHHH
Confidence 6789999999653 366666 466777665321111111 00111122222333332222 245699999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccC--------CeEEEEe
Q 014006 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD--------GVVYVID 297 (432)
Q Consensus 226 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~--------~v~~VI~ 297 (432)
++.+++.|.+ .++.+..+||+....++..+..+++.| .|+||||+++||+||+ +..+||+
T Consensus 487 sE~Ls~~L~~----------~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn 554 (822)
T 3jux_A 487 SELLSSMLKK----------KGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG 554 (822)
T ss_dssp HHHHHHHHHT----------TTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE
T ss_pred HHHHHHHHHH----------CCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe
Confidence 9999999987 477888999997666666666666666 5999999999999998 6679999
Q ss_pred CCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccc
Q 014006 298 CGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (432)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~ 348 (432)
+++|. |...|.||+||+||. .+|.++.+++.++
T Consensus 555 te~Pe------------------s~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 555 TERHE------------------SRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp SSCCS------------------SHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred cCCCC------------------CHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 99866 777999999999999 7899999887665
No 59
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=8.1e-28 Score=220.93 Aligned_cols=174 Identities=18% Similarity=0.232 Sum_probs=143.0
Q ss_pred HHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcc
Q 014006 205 IDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAE 284 (432)
Q Consensus 205 ~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~ 284 (432)
..+.....++++||||+|+++++.++..|.. .++.+.++||+|++++|..+++.|++|..+|||||++++
T Consensus 20 ~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~----------~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~ 89 (300)
T 3i32_A 20 SDLLYVASPDRAMVFTRTKAETEEIAQGLLR----------LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAA 89 (300)
T ss_dssp HHHHHHHCCSSEEEECSSHHHHHHHHHHHHT----------TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTT
T ss_pred HHHHHhcCCCCEEEEECCHHHHHHHHHHHHh----------CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhh
Confidence 3333334578999999999999999999976 478899999999999999999999999999999999999
Q ss_pred cccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccc--------------h
Q 014006 285 TSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV--------------Y 349 (432)
Q Consensus 285 ~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~--------------~ 349 (432)
+|+|+|++++|||+|+|. +..+|+||+|||||. ++|.||.++++.+ +
T Consensus 90 ~Gidi~~v~~VI~~d~p~------------------s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~ 151 (300)
T 3i32_A 90 RGLDIPQVDLVVHYRMPD------------------RAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 151 (300)
T ss_dssp CSTTCCCCSEEEESSCCS------------------STTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCC
T ss_pred cCccccceeEEEEcCCCC------------------CHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcc
Confidence 999999999999999865 667999999999999 6899999998877 3
Q ss_pred hhcCCCCCCCccccCCchHHHHHHhhCCCCCCccccc-----cCCCCCCHHHHHHHHHHHHHccC
Q 014006 350 HDEFLDVTVPEIQRSSLAGSVLYLKSLDLSDINVLKF-----DFLDPPSSESLEDALKQLYLIDA 409 (432)
Q Consensus 350 ~~~~~~~~~~~i~~~~l~~~~l~l~~~~~~~~~~~~~-----~~~~~p~~~~l~~~~~~L~~~g~ 409 (432)
.. +.....+++.+..+..+++.++.+...+ ...| +++++|+.+.+..|+..|.....
T Consensus 152 ~~-~~~~~~~ei~~~~~~~~~~~l~~~~~~~--~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 152 KR-VNPPTPEEVLEAKWRHLLARLARVPEKD--YRLYQDFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp EE-CCCCCHHHHHHHHHHHHHHHHTTSCHHH--HHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred eE-eCCCCHHHHHHHHHHHHHHHHHhcchhh--HHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 33 5556677888888989888888765433 4444 56777899999999999965543
No 60
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.93 E-value=7.9e-25 Score=223.04 Aligned_cols=168 Identities=15% Similarity=0.079 Sum_probs=122.6
Q ss_pred CcEEEEEecccChHHHHhhccCCCeeecCC----CCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHH
Q 014006 150 KLKILITSATLDGEKVSKFFSNCPTLNVPG----KLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (432)
Q Consensus 150 ~~~ii~~SAT~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~ 225 (432)
..|++++|||++...+.. ....+.... ...|.... . .........+..+.... ..++++||||+|++.
T Consensus 380 ~~q~i~~SAT~~~~~~~~---~~~~~~~~~r~~~l~~p~i~v-~--~~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH---SGRVVEQIIRPTGLLDPLVRV-K--PTENQILDLMEGIRERA--ARGERTLVTVLTVRM 451 (664)
T ss_dssp CSEEEEEESSCCHHHHHH---CSEEEEECSCTTCCCCCEEEE-E--CSTTHHHHHHHHHHHHH--HTTCEEEEECSSHHH
T ss_pred cCCEEEEecCCCHHHHHh---hhCeeeeeeccCCCCCCeEEE-e--cccchHHHHHHHHHHHH--hcCCEEEEEECCHHH
Confidence 478999999998654432 011111111 11221111 1 11122233333333222 245799999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCccccee
Q 014006 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ 305 (432)
Q Consensus 226 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~ 305 (432)
++.++..|.+. ++.+..+||++++.+|.++++.|++|..+|||||+++++|+|+|++++||+++....
T Consensus 452 ae~L~~~L~~~----------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~-- 519 (664)
T 1c4o_A 452 AEELTSFLVEH----------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKE-- 519 (664)
T ss_dssp HHHHHHHHHHT----------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSC--
T ss_pred HHHHHHHHHhc----------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCccc--
Confidence 99999999883 777889999999999999999999999999999999999999999999999885321
Q ss_pred ecCCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEecCccc
Q 014006 306 YNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTV 348 (432)
Q Consensus 306 ~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~ 348 (432)
..|.|..+|+||+|||||.++|.|+.++++.+
T Consensus 520 -----------G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~ 551 (664)
T 1c4o_A 520 -----------GFLRSERSLIQTIGRAARNARGEVWLYADRVS 551 (664)
T ss_dssp -----------SGGGSHHHHHHHHGGGTTSTTCEEEEECSSCC
T ss_pred -----------CCCCCHHHHHHHHCccCcCCCCEEEEEEcCCC
Confidence 11447889999999999999999999997643
No 61
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.91 E-value=3.1e-23 Score=211.51 Aligned_cols=113 Identities=12% Similarity=0.175 Sum_probs=97.0
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCcc---EEEEeecCccccc
Q 014006 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCR---RFIVSTNIAETSL 287 (432)
Q Consensus 211 ~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~---~ilvaT~~~~~Gi 287 (432)
..+.++|||++.+..++.+...|... ++.+..+||+++.++|.++++.|++|.. .+|++|++++.|+
T Consensus 414 ~~~~k~lIFs~~~~~~~~l~~~l~~~----------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Gl 483 (644)
T 1z3i_X 414 TTSDKVVLVSNYTQTLDLFEKLCRNR----------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGL 483 (644)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHH----------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTC
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHC----------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCc
Confidence 34679999999999999999999874 7778899999999999999999998865 4899999999999
Q ss_pred ccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC---CCeEEEecCccchhh
Q 014006 288 TVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHD 351 (432)
Q Consensus 288 di~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~---~G~~~~l~~~~~~~~ 351 (432)
|++++++||+++.+ .+.+.+.|++||++|.+ +..+|++++....+.
T Consensus 484 nl~~a~~Vi~~d~~------------------wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe 532 (644)
T 1z3i_X 484 NLIGANRLVMFDPD------------------WNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEE 532 (644)
T ss_dssp CCTTEEEEEECSCC------------------SSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHH
T ss_pred ccccCCEEEEECCC------------------CCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHH
Confidence 99999999997754 37789999999999984 356788887665443
No 62
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.8e-24 Score=220.84 Aligned_cols=313 Identities=16% Similarity=0.113 Sum_probs=194.7
Q ss_pred CchhhhHHHHHHHHh----cCCEEEEEcCCCCCHHHHHHHHHhhc--CCCCCcEEEecccchhhhHHHHHHHHHHhC-Cc
Q 014006 4 LPILQYEETIVETVE----QNPVVVVIGETGSGKSTQLSQILHRH--GYTKSGIIGVTQPRRVAAVSVARRVAQELG-VR 76 (432)
Q Consensus 4 lp~~~~q~~i~~~i~----~~~~~ii~apTGsGKT~~~~~~~~~~--~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~-~~ 76 (432)
..+++||.+.++.+. .+...|+..+||+|||.++..++... .....+.+++++| ..+..|..+.+.+.+. ..
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 467899999997665 88899999999999994443333221 2233456788889 5677788888877763 33
Q ss_pred cCCeeeeeeee--------------cccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHH
Q 014006 77 LGEEVGYAIRF--------------EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (432)
Q Consensus 77 ~~~~~g~~~~~--------------~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~ 142 (432)
+....|..... ........+|+++|++.+......- ...++++||+|||| +.-+..... .+.
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l-~~~~w~~vIvDEaH-~lkn~~s~~--~~~ 389 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAEL-GSIKWQFMAVDEAH-RLKNAESSL--YES 389 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHH-HTSEEEEEEETTGG-GGCCSSSHH--HHH
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHH-hcCCcceeehhhhh-hhcCchhHH--HHH
Confidence 32222311100 0012346789999999887543110 12357899999999 443222111 122
Q ss_pred HHhhhcCCcEEEEEecccCh---HH---HHhhccCC------------------------------CeeecC----CCCC
Q 014006 143 LVNLRASKLKILITSATLDG---EK---VSKFFSNC------------------------------PTLNVP----GKLY 182 (432)
Q Consensus 143 ~~~~~~~~~~ii~~SAT~~~---~~---~~~~~~~~------------------------------~~i~~~----~~~~ 182 (432)
+ ..... ...+++|||+-. .+ +-.|+... -++... ....
T Consensus 390 l-~~l~~-~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~L 467 (800)
T 3mwy_W 390 L-NSFKV-ANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSL 467 (800)
T ss_dssp H-TTSEE-EEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTS
T ss_pred H-HHhhh-ccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhcc
Confidence 2 22222 567999999821 11 11222100 000000 0001
Q ss_pred ceeE---EeCCCCCcc---h------------------------------------------------------------
Q 014006 183 PVEI---LHSKERPTS---Y------------------------------------------------------------ 196 (432)
Q Consensus 183 ~~~~---~~~~~~~~~---~------------------------------------------------------------ 196 (432)
|... .+....... |
T Consensus 468 P~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~ 547 (800)
T 3mwy_W 468 PSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENV 547 (800)
T ss_dssp CCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHH
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHH
Confidence 1110 000000000 0
Q ss_pred H------HHHHHHHHHHHh--cCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCC
Q 014006 197 L------ESALKTAIDIHV--REPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSP 268 (432)
Q Consensus 197 ~------~~~~~~~~~~~~--~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~ 268 (432)
. ...+..+..+.. ...+.++|||+.....++.+...|... ++.+..+||+++.++|.++++.
T Consensus 548 ~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~----------g~~~~~i~G~~~~~eR~~~i~~ 617 (800)
T 3mwy_W 548 LRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK----------GINFQRLDGTVPSAQRRISIDH 617 (800)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHH----------TCCCEEESTTSCHHHHHHHHHT
T ss_pred HHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhC----------CCCEEEEeCCCCHHHHHHHHHH
Confidence 0 000111111111 234679999999999999999999874 7778899999999999999999
Q ss_pred CCCCcc---EEEEeecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC---CCCeEEE
Q 014006 269 PPPNCR---RFIVSTNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT---RPGKCYR 342 (432)
Q Consensus 269 f~~g~~---~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~---~~G~~~~ 342 (432)
|+++.. .+|++|.+++.|+|++++++||+++.+- +...+.||+||++|. ++..+|+
T Consensus 618 F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~w------------------np~~~~Qa~gR~~RiGQ~k~V~Vyr 679 (800)
T 3mwy_W 618 FNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDW------------------NPQADLQAMARAHRIGQKNHVMVYR 679 (800)
T ss_dssp TSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCS------------------CSHHHHHHHTTTSCSSCCSCEEEEE
T ss_pred hhCCCCCceEEEEecccccCCCCccccceEEEecCCC------------------ChhhHHHHHHHHHhcCCCceEEEEE
Confidence 998654 5999999999999999999999977533 667899999999997 3567888
Q ss_pred ecCccchhh
Q 014006 343 LYPSTVYHD 351 (432)
Q Consensus 343 l~~~~~~~~ 351 (432)
|+++...+.
T Consensus 680 lv~~~TiEe 688 (800)
T 3mwy_W 680 LVSKDTVEE 688 (800)
T ss_dssp EEETTSHHH
T ss_pred EecCCCHHH
Confidence 988776544
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=187.00 Aligned_cols=168 Identities=18% Similarity=0.167 Sum_probs=116.2
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcC-------CCCCcEEEecccchhhhHHHHHHHHHHh--C
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG-------YTKSGIIGVTQPRRVAAVSVARRVAQEL--G 74 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~-------~~~~~~vl~~~P~~~l~~q~~~~~~~~~--~ 74 (432)
..+++|.++++.+.+|++++++|||||||| +++.+++.... ...+.++++++|+++|+.|+++++.+.. +
T Consensus 42 ~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 121 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKG 121 (228)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccC
Confidence 357899999999999999999999999999 33333333221 1246689999999999999999987763 2
Q ss_pred CccCCeeeeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCc
Q 014006 75 VRLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKL 151 (432)
Q Consensus 75 ~~~~~~~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~ 151 (432)
.......|...... .....+.+|+|+||+++.+.+.... .+.++++||+|||| +..+.++... +..+....+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~-~~~i~~~~~~~~ 199 (228)
T 3iuy_A 122 LKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEAD-KMLDMEFEPQ-IRKILLDVRPDR 199 (228)
T ss_dssp CCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHH-HHHHTTCHHH-HHHHHHHSCSSC
T ss_pred ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHH-HHhccchHHH-HHHHHHhCCcCC
Confidence 22222233211111 1112457999999999999886655 68899999999999 5555444444 455555555569
Q ss_pred EEEEEecccChHH---HHhhccCCCe
Q 014006 152 KILITSATLDGEK---VSKFFSNCPT 174 (432)
Q Consensus 152 ~ii~~SAT~~~~~---~~~~~~~~~~ 174 (432)
|+++||||++.+. ...++.++..
T Consensus 200 ~~l~~SAT~~~~~~~~~~~~l~~p~~ 225 (228)
T 3iuy_A 200 QTVMTSATWPDTVRQLALSYLKDPMI 225 (228)
T ss_dssp EEEEEESCCCHHHHHHHHTTCSSCEE
T ss_pred eEEEEEeeCCHHHHHHHHHHCCCCEE
Confidence 9999999998753 4455554433
No 64
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=8.4e-24 Score=180.09 Aligned_cols=129 Identities=16% Similarity=0.234 Sum_probs=107.8
Q ss_pred HHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEe
Q 014006 200 ALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVS 279 (432)
Q Consensus 200 ~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilva 279 (432)
....+..+......+++||||++++.++.++..|.. .++.+..+||+|++++|..+++.|++|..+||||
T Consensus 21 K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~----------~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLva 90 (175)
T 2rb4_A 21 KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQ----------DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLIT 90 (175)
T ss_dssp HHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHT----------TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH----------cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 445555666566678999999999999999999986 3778999999999999999999999999999999
Q ss_pred ecCcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchh
Q 014006 280 TNIAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYH 350 (432)
Q Consensus 280 T~~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~ 350 (432)
|+++++|+|+|++++||++|+|.... ...+..+|+||+||+||. ++|.|+.++++.+..
T Consensus 91 T~~~~~Gid~~~~~~Vi~~d~p~~~~------------~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 150 (175)
T 2rb4_A 91 TNVCARGIDVKQVTIVVNFDLPVKQG------------EEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELP 150 (175)
T ss_dssp CCSCCTTTCCTTEEEEEESSCCC--C------------CSCCHHHHHHHHCBC----CCEEEEEEECGGGHH
T ss_pred ecchhcCCCcccCCEEEEeCCCCCcc------------ccCCHHHHHHHhcccccCCCCceEEEEEccchHH
Confidence 99999999999999999998763211 124888999999999999 789999999877654
No 65
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.90 E-value=1e-23 Score=214.68 Aligned_cols=168 Identities=17% Similarity=0.108 Sum_probs=122.6
Q ss_pred CcEEEEEecccChHHHHhhccCCCeeecCC----CCCceeEEeCCCCCcchHHHHHHHHHHHHhcCCCCCEEEEeCCHHH
Q 014006 150 KLKILITSATLDGEKVSKFFSNCPTLNVPG----KLYPVEILHSKERPTSYLESALKTAIDIHVREPEGDVLIFMTGQDD 225 (432)
Q Consensus 150 ~~~ii~~SAT~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvF~~t~~~ 225 (432)
..|++++|||++...+.. - ...+.... ...|. .... .........+..+.... ..++++||||+|++.
T Consensus 386 ~~q~i~~SAT~~~~~~~~-~--~~~~~~~~r~~~l~~p~-i~v~--~~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ 457 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH-T--DEMVEQIIRPTGLLDPL-IDVR--PIEGQIDDLIGEIQARI--ERNERVLVTTLTKKM 457 (661)
T ss_dssp CSEEEEECSSCCHHHHHH-C--SSCEEECCCTTCCCCCE-EEEE--CSTTHHHHHHHHHHHHH--TTTCEEEEECSSHHH
T ss_pred CCCEEEEecCCChhHHHh-h--hCeeeeeecccCCCCCe-EEEe--cccchHHHHHHHHHHHH--hcCCeEEEEECCHHH
Confidence 478999999997654432 1 11111111 11222 1111 11122233333332222 345799999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCCeEEEEeCCccccee
Q 014006 226 IEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDCGYVKQRQ 305 (432)
Q Consensus 226 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~v~~VI~~~~~~~~~ 305 (432)
++.++..|.+. ++.+..+||++++.+|.++++.|++|..+|||||+++++|+|+|++++||+++....
T Consensus 458 ae~L~~~L~~~----------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~-- 525 (661)
T 2d7d_A 458 SEDLTDYLKEI----------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKE-- 525 (661)
T ss_dssp HHHHHHHHHHT----------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCC--
T ss_pred HHHHHHHHHhc----------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccc--
Confidence 99999999883 777889999999999999999999999999999999999999999999999886321
Q ss_pred ecCCCCCccceEeeecHhhHHHhhcccCCCCCCeEEEecCccc
Q 014006 306 YNPSSGMYSLDVVQISKVQANQRVGRAGRTRPGKCYRLYPSTV 348 (432)
Q Consensus 306 ~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~~G~~~~l~~~~~ 348 (432)
. .|.|..+|+||+|||||.++|.|+.++++.+
T Consensus 526 --------G---~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 526 --------G---FLRSERSLIQTIGRAARNAEGRVIMYADKIT 557 (661)
T ss_dssp --------T---TTTSHHHHHHHHHTTTTSTTCEEEEECSSCC
T ss_pred --------c---CCCCHHHHHHHhCcccCCCCCEEEEEEeCCC
Confidence 0 1347789999999999999999999997753
No 66
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.90 E-value=3.1e-23 Score=191.86 Aligned_cols=171 Identities=17% Similarity=0.160 Sum_probs=122.5
Q ss_pred hhhhHHHHHHHHhcC--CEEEEEcCCCCCHH-HHHHHHHhhcC-CCCCcEEEecccchhhhHHHHHHHHHHhCCccCCee
Q 014006 6 ILQYEETIVETVEQN--PVVVVIGETGSGKS-TQLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEV 81 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~--~~~ii~apTGsGKT-~~~~~~~~~~~-~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~ 81 (432)
.+++|.++++.+..+ ++++++|||||||| +++.+++.... ...+.++++++|+++|+.|+++.+.+......+..+
T Consensus 115 pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~ 194 (300)
T 3fmo_B 115 PSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKL 194 (300)
T ss_dssp CCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCE
T ss_pred CCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEE
Confidence 456799999999987 99999999999999 44444544433 334558999999999999999988766543222233
Q ss_pred eeee---eecccCCCCceEEEcCHHHHHHHHhcCC--CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEE
Q 014006 82 GYAI---RFEDRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (432)
Q Consensus 82 g~~~---~~~~~~~~~~~i~v~T~~~l~~~l~~~~--~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~ 156 (432)
+... ..........+|+|+|||++.+++.... .+.++++||||||| ++++...+...+..+....+.+.|+++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad-~l~~~~~~~~~~~~i~~~~~~~~q~i~~ 273 (300)
T 3fmo_B 195 AYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD-VMIATQGHQDQSIRIQRMLPRNCQMLLF 273 (300)
T ss_dssp EEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH-HHHHSTTHHHHHHHHHTTSCTTCEEEEE
T ss_pred EEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH-HHhhccCcHHHHHHHHHhCCCCCEEEEE
Confidence 2211 1122224567899999999999986533 68899999999999 5555223444466777777777999999
Q ss_pred ecccChHH---HHhhccCCCeeec
Q 014006 157 SATLDGEK---VSKFFSNCPTLNV 177 (432)
Q Consensus 157 SAT~~~~~---~~~~~~~~~~i~~ 177 (432)
|||++.+. ...++.++..+.+
T Consensus 274 SAT~~~~v~~~a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 274 SATFEDSVWKFAQKVVPDPNVIKL 297 (300)
T ss_dssp ESCCCHHHHHHHHHHSSSCEEEEE
T ss_pred eccCCHHHHHHHHHHCCCCeEEEe
Confidence 99998754 4466666655554
No 67
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.90 E-value=4.4e-23 Score=183.21 Aligned_cols=174 Identities=18% Similarity=0.196 Sum_probs=119.9
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhc-CCCCCcEEEecccchhhhHHHHHHHHHHhC---CccCC
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELG---VRLGE 79 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~-~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~---~~~~~ 79 (432)
..+++|.++++.+.+++++++.+||||||| +++.+++... ....+.++++++|+++|+.|+++.+.+... ..+..
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 115 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHA 115 (224)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEE
Confidence 357899999999999999999999999999 4344444433 334456899999999999999998876543 33333
Q ss_pred eeeeeeeec-ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 80 EVGYAIRFE-DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 80 ~~g~~~~~~-~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
..|...... ......++|+++||+++.+.+.... .+.++++||+|||| +..+.++... +..+....+.+.|++++|
T Consensus 116 ~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah-~~~~~~~~~~-l~~i~~~~~~~~~~i~lS 193 (224)
T 1qde_A 116 CIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD-EMLSSGFKEQ-IYQIFTLLPPTTQVVLLS 193 (224)
T ss_dssp ECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH-HHHHTTCHHH-HHHHHHHSCTTCEEEEEE
T ss_pred EeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh-HHhhhhhHHH-HHHHHHhCCccCeEEEEE
Confidence 333222111 1112348999999999998886544 68899999999999 4444444333 555555555668999999
Q ss_pred cccChHH---HHhhccCCCeeecCCC
Q 014006 158 ATLDGEK---VSKFFSNCPTLNVPGK 180 (432)
Q Consensus 158 AT~~~~~---~~~~~~~~~~i~~~~~ 180 (432)
||++.+. +..++.++..+.+...
T Consensus 194 AT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 194 ATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp SSCCHHHHHHHHHHCSSCEEEC----
T ss_pred eecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9998743 5667766666655543
No 68
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.90 E-value=9.8e-24 Score=177.42 Aligned_cols=118 Identities=21% Similarity=0.361 Sum_probs=105.2
Q ss_pred HHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCccc
Q 014006 206 DIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAET 285 (432)
Q Consensus 206 ~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~ 285 (432)
.+.....++++||||++++.++.++..|.+ .++.+..+||+|++++|..+++.|++|..+|||||+++++
T Consensus 28 ~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~----------~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 97 (163)
T 2hjv_A 28 DVLMTENPDSCIIFCRTKEHVNQLTDELDD----------LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAAR 97 (163)
T ss_dssp HHHHHHCCSSEEEECSSHHHHHHHHHHHHH----------TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTT
T ss_pred HHHHhcCCCcEEEEECCHHHHHHHHHHHHH----------cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhc
Confidence 333344567999999999999999999987 3778999999999999999999999999999999999999
Q ss_pred ccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 286 SLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 286 Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
|+|+|++++||++|+|. +..+|+||+||+||. ++|.|+.++++.+...
T Consensus 98 Gld~~~~~~Vi~~~~p~------------------~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~ 146 (163)
T 2hjv_A 98 GIDIENISLVINYDLPL------------------EKESYVHRTGRTGRAGNKGKAISFVTAFEKRF 146 (163)
T ss_dssp TCCCSCCSEEEESSCCS------------------SHHHHHHHTTTSSCTTCCEEEEEEECGGGHHH
T ss_pred CCchhcCCEEEEeCCCC------------------CHHHHHHhccccCcCCCCceEEEEecHHHHHH
Confidence 99999999999988754 778999999999999 6899999998776543
No 69
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.89 E-value=1.7e-23 Score=185.10 Aligned_cols=172 Identities=19% Similarity=0.201 Sum_probs=121.3
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcC-CCCCcEEEecccchhhhHHHHHHHHHHhCC-------
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELGV------- 75 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~-~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~------- 75 (432)
..+++|.++++.+.+++++++.+||||||| +++.+++.... ...+.++++++|+++|+.|+++.+.+....
T Consensus 26 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 105 (219)
T 1q0u_A 26 KPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMI 105 (219)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCC
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccce
Confidence 457899999999999999999999999999 33444444332 234568999999999999999988776532
Q ss_pred ccCCeeeeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcE
Q 014006 76 RLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (432)
Q Consensus 76 ~~~~~~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (432)
.+....|...... .......+|+|+||+++.+.+.... .+.+++++|+|||| +..+.++.. .+..+....+.+.|
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~~~~~~~~~-~l~~i~~~~~~~~~ 183 (219)
T 1q0u_A 106 VARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEAD-LMLDMGFIT-DVDQIAARMPKDLQ 183 (219)
T ss_dssp CEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHH-HHHHTTCHH-HHHHHHHTSCTTCE
T ss_pred EEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCch-HHhhhChHH-HHHHHHHhCCcccE
Confidence 2222223211111 1112467899999999998886544 67889999999999 444444433 35666666666689
Q ss_pred EEEEecccChHH---HHhhccCCCeeecC
Q 014006 153 ILITSATLDGEK---VSKFFSNCPTLNVP 178 (432)
Q Consensus 153 ii~~SAT~~~~~---~~~~~~~~~~i~~~ 178 (432)
++++|||++.+. +..++.++..+.+.
T Consensus 184 ~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 184 MLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp EEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred EEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 999999997743 56677666555444
No 70
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.89 E-value=4.2e-23 Score=180.84 Aligned_cols=166 Identities=19% Similarity=0.186 Sum_probs=119.3
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhc-CCCCCcEEEecccchhhhHHHHHHHHHHhCC----ccC
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGV----RLG 78 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~-~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~----~~~ 78 (432)
..+++|.++++.+.+++++++.+||||||| +++.+++... ....+.++++++|+++|+.|+++.+.+.... .+.
T Consensus 25 ~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 104 (206)
T 1vec_A 25 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVM 104 (206)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEE
T ss_pred CCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEE
Confidence 467899999999999999999999999999 3443344333 2334568999999999999999988776533 222
Q ss_pred Ceeeeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEE
Q 014006 79 EEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (432)
Q Consensus 79 ~~~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~ 155 (432)
...|...... .......+|+|+||+++.+.+.... .+.+++++|+|||| +..+.++.. .+..+....+++.|+++
T Consensus 105 ~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~-~l~~i~~~~~~~~~~l~ 182 (206)
T 1vec_A 105 ATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD-KLLSQDFVQ-IMEDIILTLPKNRQILL 182 (206)
T ss_dssp EECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHH-HHTSTTTHH-HHHHHHHHSCTTCEEEE
T ss_pred EEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChH-HhHhhCcHH-HHHHHHHhCCccceEEE
Confidence 2222111110 1123568999999999998886554 78899999999999 555555544 36666666665699999
Q ss_pred EecccChHH---HHhhccCC
Q 014006 156 TSATLDGEK---VSKFFSNC 172 (432)
Q Consensus 156 ~SAT~~~~~---~~~~~~~~ 172 (432)
||||++.+. +..++.++
T Consensus 183 ~SAT~~~~~~~~~~~~l~~p 202 (206)
T 1vec_A 183 YSATFPLSVQKFMNSHLEKP 202 (206)
T ss_dssp EESCCCHHHHHHHHHHCSSC
T ss_pred EEeeCCHHHHHHHHHHcCCC
Confidence 999998753 45566543
No 71
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.89 E-value=1.7e-23 Score=186.49 Aligned_cols=170 Identities=15% Similarity=0.085 Sum_probs=120.4
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhc-CCCCCcEEEecccchhhhHHHHHHHHHHhCC----ccCC
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRH-GYTKSGIIGVTQPRRVAAVSVARRVAQELGV----RLGE 79 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~-~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~----~~~~ 79 (432)
.+++|.++++.+.+|+++++.+||||||| +++.+++... ....+.++++++|+++|+.|+++++.+.... .++.
T Consensus 47 ~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 126 (230)
T 2oxc_A 47 PSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHV 126 (230)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEE
Confidence 57899999999999999999999999999 3343444433 2334568999999999999999998776432 2222
Q ss_pred eeeeeee-ecccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 80 EVGYAIR-FEDRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 80 ~~g~~~~-~~~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
..|.... .......+.+|+|+||+++.+.+.... .+.+++++|+|||| +..+.+.+...++.+....+.+.|++++|
T Consensus 127 ~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~~i~~~~~~~~~~l~lS 205 (230)
T 2oxc_A 127 FIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEAD-KLLEEGSFQEQINWIYSSLPASKQMLAVS 205 (230)
T ss_dssp ECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHH-HHHSTTSSHHHHHHHHHHSCSSCEEEEEE
T ss_pred EeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCch-HhhcCcchHHHHHHHHHhCCCCCeEEEEE
Confidence 2221111 111122468999999999998886544 67889999999999 55554423344666666666668999999
Q ss_pred cccChHH---HHhhccCCCeee
Q 014006 158 ATLDGEK---VSKFFSNCPTLN 176 (432)
Q Consensus 158 AT~~~~~---~~~~~~~~~~i~ 176 (432)
||++.+. +..|++++..+.
T Consensus 206 AT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 206 ATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp SCCCHHHHHHHTTTCSSCEEEC
T ss_pred eccCHHHHHHHHHHcCCCeEEE
Confidence 9998753 455665554443
No 72
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.89 E-value=1.4e-23 Score=176.84 Aligned_cols=120 Identities=20% Similarity=0.304 Sum_probs=102.5
Q ss_pred HHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCc
Q 014006 204 AIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIA 283 (432)
Q Consensus 204 ~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~ 283 (432)
+..+.....++++||||++++.++.++..|.. .++.+..+||++++++|.++++.|++|..+|||||+++
T Consensus 21 l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~----------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 90 (165)
T 1fuk_A 21 LTDLYDSISVTQAVIFCNTRRKVEELTTKLRN----------DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLL 90 (165)
T ss_dssp HHHHHHHTTCSCEEEEESSHHHHHHHHHHHHH----------TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGG
T ss_pred HHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH----------cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChh
Confidence 33444445678999999999999999999987 37789999999999999999999999999999999999
Q ss_pred ccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 284 ETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 284 ~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
++|+|+|++++||++|+|. +..+|+||+||+||. ++|.|+.++++.+...
T Consensus 91 ~~G~d~~~~~~Vi~~~~p~------------------~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~ 141 (165)
T 1fuk_A 91 ARGIDVQQVSLVINYDLPA------------------NKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 141 (165)
T ss_dssp TTTCCCCSCSEEEESSCCS------------------SGGGGGGSSCSCC-----CEEEEEEETTTHHH
T ss_pred hcCCCcccCCEEEEeCCCC------------------CHHHHHHHhcccccCCCCceEEEEEcchHHHH
Confidence 9999999999999988754 667999999999999 7899999998776543
No 73
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.89 E-value=1.9e-23 Score=177.17 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=105.8
Q ss_pred HHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeec
Q 014006 202 KTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTN 281 (432)
Q Consensus 202 ~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~ 281 (432)
..+..+......+++||||++++.++.++..|.. .++.+..+||+|++++|..+++.|++|..+|||||+
T Consensus 20 ~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~----------~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~ 89 (172)
T 1t5i_A 20 RKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE----------QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 89 (172)
T ss_dssp HHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHH----------TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS
T ss_pred HHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHh----------cCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 3344444455678999999999999999999987 377899999999999999999999999999999999
Q ss_pred CcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccc
Q 014006 282 IAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTV 348 (432)
Q Consensus 282 ~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~ 348 (432)
++++|+|+|++++||++|+|. +..+|+||+||+||. ++|.++.++++.+
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~------------------~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPE------------------DSDTYLHRVARAGRFGTKGLAITFVSDEN 139 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCS------------------SHHHHHHHHHHHTGGGCCCEEEEEECSHH
T ss_pred chhcCcchhhCCEEEEECCCC------------------CHHHHHHHhcccccCCCCcEEEEEEcChh
Confidence 999999999999999988754 778999999999999 6899999997653
No 74
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.89 E-value=2.5e-23 Score=186.99 Aligned_cols=171 Identities=20% Similarity=0.168 Sum_probs=121.1
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcC------CCCCcEEEecccchhhhHHHHHHHHHHh---CC
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG------YTKSGIIGVTQPRRVAAVSVARRVAQEL---GV 75 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~------~~~~~~vl~~~P~~~l~~q~~~~~~~~~---~~ 75 (432)
.+++|.++++.+.+|++++++|||||||| +++.+++.... ...+.++++++|+++|+.|+++.+.+.. +.
T Consensus 52 ~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 131 (242)
T 3fe2_A 52 PTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRL 131 (242)
T ss_dssp CCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCc
Confidence 57899999999999999999999999999 43333333221 1345689999999999999988775543 44
Q ss_pred ccCCeeeeeeeecc--cCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcE
Q 014006 76 RLGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (432)
Q Consensus 76 ~~~~~~g~~~~~~~--~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (432)
.+....|....... ....+++|+|+||+++.+.+.... .+.+++++|+|||| +..+.++... +..+....+++.|
T Consensus 132 ~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~l~~~~~~~~-~~~i~~~~~~~~q 209 (242)
T 3fe2_A 132 KSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEAD-RMLDMGFEPQ-IRKIVDQIRPDRQ 209 (242)
T ss_dssp CEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHH-HHHHTTCHHH-HHHHHTTSCSSCE
T ss_pred eEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHH-HHhhhCcHHH-HHHHHHhCCccce
Confidence 44333332111111 112357999999999999886554 78999999999999 5555554444 5666666666799
Q ss_pred EEEEecccChHH---HHhhccCCCeeecC
Q 014006 153 ILITSATLDGEK---VSKFFSNCPTLNVP 178 (432)
Q Consensus 153 ii~~SAT~~~~~---~~~~~~~~~~i~~~ 178 (432)
+++||||++.+. ...++.++..+.+.
T Consensus 210 ~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 210 TLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp EEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred EEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 999999998753 55666655555543
No 75
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=183.01 Aligned_cols=173 Identities=17% Similarity=0.152 Sum_probs=119.8
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcC--CCCCcEEEecccchhhhHHHHHHHHHHhCC---ccCC
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG--YTKSGIIGVTQPRRVAAVSVARRVAQELGV---RLGE 79 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~--~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~---~~~~ 79 (432)
.+++|.++++.+.+|+++++.|||||||| +++.+++.... ...+.++++++|+++|+.|+++.+.+.... .+..
T Consensus 52 ~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 131 (245)
T 3dkp_A 52 PTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHM 131 (245)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEC
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEE
Confidence 67899999999999999999999999999 43334443332 234568999999999999999998766432 2222
Q ss_pred eeeeeee---ecccCCCCceEEEcCHHHHHHHHhcC---CCCCCCcEEEEeCCCcCCCC---HHHHHHHHHHHHhhhcCC
Q 014006 80 EVGYAIR---FEDRTSERTLIKYLTDGVLLREILSN---PDLSPYSVIILDEAHERSLN---TDILLGLVKRLVNLRASK 150 (432)
Q Consensus 80 ~~g~~~~---~~~~~~~~~~i~v~T~~~l~~~l~~~---~~l~~~~~vViDE~h~~~~~---~~~~~~~l~~~~~~~~~~ 150 (432)
..|.... .......+++|+|+||+++...+... ..+.++++||+|||| +..+ .++...+...+....+.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~~~~i~~~~~~~~ 210 (245)
T 3dkp_A 132 IHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESD-KLFEDGKTGFRDQLASIFLACTSHK 210 (245)
T ss_dssp CCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHH-HHHHHC--CHHHHHHHHHHHCCCTT
T ss_pred EecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChH-HhcccccccHHHHHHHHHHhcCCCC
Confidence 2221111 11222456899999999999988665 368899999999999 4444 345555444433334446
Q ss_pred cEEEEEecccChHH---HHhhccCCCeeecCC
Q 014006 151 LKILITSATLDGEK---VSKFFSNCPTLNVPG 179 (432)
Q Consensus 151 ~~ii~~SAT~~~~~---~~~~~~~~~~i~~~~ 179 (432)
.|+++||||++.+. ...++.++..+.+..
T Consensus 211 ~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 211 VRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp CEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred cEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 89999999998753 445665555555543
No 76
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.88 E-value=5.7e-23 Score=185.16 Aligned_cols=170 Identities=21% Similarity=0.203 Sum_probs=120.6
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhh-cCCCCCcEEEecccchhhhHHHHHHHHHHh---CCccCC
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHR-HGYTKSGIIGVTQPRRVAAVSVARRVAQEL---GVRLGE 79 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~-~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~---~~~~~~ 79 (432)
..+++|.++++.+.+++++++.|||||||| +++.+++.. .....+.++++++|+++|+.|+++.+.+.. +..++.
T Consensus 65 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~ 144 (249)
T 3ber_A 65 KPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAV 144 (249)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEE
Confidence 568899999999999999999999999999 333333332 222345689999999999999998886654 333333
Q ss_pred eeeeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC--CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEE
Q 014006 80 EVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (432)
Q Consensus 80 ~~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~--~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~ 155 (432)
..|...... .....+++|+|+||+++.+.+.... .+.++++||+|||| +..+.++... +..++...+.+.|+++
T Consensus 145 ~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah-~l~~~~~~~~-l~~i~~~~~~~~~~l~ 222 (249)
T 3ber_A 145 IVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD-RILNMDFETE-VDKILKVIPRDRKTFL 222 (249)
T ss_dssp ECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH-HHHHTTCHHH-HHHHHHSSCSSSEEEE
T ss_pred EECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh-hhhccChHHH-HHHHHHhCCCCCeEEE
Confidence 333211111 1112567999999999999886533 68899999999999 5655555444 5566666666699999
Q ss_pred EecccChHH---HHhhccCCCeee
Q 014006 156 TSATLDGEK---VSKFFSNCPTLN 176 (432)
Q Consensus 156 ~SAT~~~~~---~~~~~~~~~~i~ 176 (432)
||||++.+. ...++.++..+.
T Consensus 223 ~SAT~~~~v~~~~~~~l~~p~~i~ 246 (249)
T 3ber_A 223 FSATMTKKVQKLQRAALKNPVKCA 246 (249)
T ss_dssp EESSCCHHHHHHHHHHCSSCEEEE
T ss_pred EeccCCHHHHHHHHHHCCCCEEEE
Confidence 999998753 455665554443
No 77
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.88 E-value=1.5e-22 Score=179.12 Aligned_cols=168 Identities=18% Similarity=0.160 Sum_probs=118.5
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCC-CCCcEEEecccchhhhHHHHHHHHHHhC----CccCC
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGY-TKSGIIGVTQPRRVAAVSVARRVAQELG----VRLGE 79 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~-~~~~~vl~~~P~~~l~~q~~~~~~~~~~----~~~~~ 79 (432)
.+++|.++++.+.+++++++.+||||||| +++.+++..... ..+.++++++|+++|+.|+++.+.+... ..++.
T Consensus 37 ~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 116 (220)
T 1t6n_A 37 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV 116 (220)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEE
Confidence 67899999999999999999999999999 344444443332 2345899999999999999998877653 23322
Q ss_pred eeeeeeeecc---cCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCC-HHHHHHHHHHHHhhhcCCcEEE
Q 014006 80 EVGYAIRFED---RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLN-TDILLGLVKRLVNLRASKLKIL 154 (432)
Q Consensus 80 ~~g~~~~~~~---~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~-~~~~~~~l~~~~~~~~~~~~ii 154 (432)
..|....... ......+|+++||+++.+.+.... .+.+++++|+|||| +..+ .++. ..+..+....+.+.|++
T Consensus 117 ~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~-~~~~~i~~~~~~~~~~i 194 (220)
T 1t6n_A 117 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD-KMLEQLDMR-RDVQEIFRMTPHEKQVM 194 (220)
T ss_dssp ESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHH-HHHSSHHHH-HHHHHHHHTSCSSSEEE
T ss_pred EeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHH-HHhcccCcH-HHHHHHHHhCCCcCeEE
Confidence 2231110000 011346999999999998886554 68899999999999 4544 4444 34666666666679999
Q ss_pred EEecccChHH---HHhhccCCCee
Q 014006 155 ITSATLDGEK---VSKFFSNCPTL 175 (432)
Q Consensus 155 ~~SAT~~~~~---~~~~~~~~~~i 175 (432)
++|||++.+. ...|+.++..+
T Consensus 195 ~~SAT~~~~~~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 195 MFSATLSKEIRPVCRKFMQDPMEI 218 (220)
T ss_dssp EEESCCCTTTHHHHHTTCSSCEEE
T ss_pred EEEeecCHHHHHHHHHHcCCCeEE
Confidence 9999997642 45666555443
No 78
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.88 E-value=1e-22 Score=182.25 Aligned_cols=169 Identities=16% Similarity=0.125 Sum_probs=116.9
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcC-CCCCcEEEecccchhhhHHHHHHHHHHhC---CccCCe
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG-YTKSGIIGVTQPRRVAAVSVARRVAQELG---VRLGEE 80 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~-~~~~~~vl~~~P~~~l~~q~~~~~~~~~~---~~~~~~ 80 (432)
.+++|.++++.+.+++++++.|||||||| +++.+++.... ...+.++++++|+++|+.|+++.+.+... ..+...
T Consensus 53 ~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 132 (237)
T 3bor_A 53 PSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHAC 132 (237)
T ss_dssp CCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEE
Confidence 57899999999999999999999999999 43444444332 23456899999999999999998876543 222222
Q ss_pred eeeeeeecc---cCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEE
Q 014006 81 VGYAIRFED---RTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (432)
Q Consensus 81 ~g~~~~~~~---~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~ 156 (432)
.|....... .....++|+|+||+++.+.+.... .+.++++||+|||| +..+.++... +..+....+.+.|++++
T Consensus 133 ~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~~~~~~~~~~-l~~i~~~~~~~~~~i~~ 210 (237)
T 3bor_A 133 IGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD-EMLSRGFKDQ-IYEIFQKLNTSIQVVLL 210 (237)
T ss_dssp CC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHH-HHHHTTCHHH-HHHHHHHSCTTCEEEEE
T ss_pred ECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCch-HhhccCcHHH-HHHHHHhCCCCCeEEEE
Confidence 332111111 112337999999999999886553 67889999999999 4444444333 45555555556899999
Q ss_pred ecccChHH---HHhhccCCCeee
Q 014006 157 SATLDGEK---VSKFFSNCPTLN 176 (432)
Q Consensus 157 SAT~~~~~---~~~~~~~~~~i~ 176 (432)
|||++.+. +..++.++..+.
T Consensus 211 SAT~~~~~~~~~~~~l~~p~~i~ 233 (237)
T 3bor_A 211 SATMPTDVLEVTKKFMRDPIRIL 233 (237)
T ss_dssp CSSCCHHHHHHHHHHCSSCEEEC
T ss_pred EEecCHHHHHHHHHHCCCCEEEE
Confidence 99998753 456666554443
No 79
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.88 E-value=1e-22 Score=182.29 Aligned_cols=172 Identities=20% Similarity=0.128 Sum_probs=119.8
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHHH-HHHHHHhhc-----CCCCCcEEEecccchhhhHHHHHHHHHHhC---C
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKST-QLSQILHRH-----GYTKSGIIGVTQPRRVAAVSVARRVAQELG---V 75 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT~-~~~~~~~~~-----~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~---~ 75 (432)
..+++|.++++.+.+++++++.+|||||||. ++.+++... ....+.++++++|+++|+.|+++.+.+... .
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 126 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDF 126 (236)
T ss_dssp BCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSC
T ss_pred CCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCe
Confidence 4578999999999999999999999999993 333333221 113456899999999999999998876543 2
Q ss_pred ccCCeeeeeeee-cccCCCCceEEEcCHHHHHHHHhcC--CCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcE
Q 014006 76 RLGEEVGYAIRF-EDRTSERTLIKYLTDGVLLREILSN--PDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (432)
Q Consensus 76 ~~~~~~g~~~~~-~~~~~~~~~i~v~T~~~l~~~l~~~--~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (432)
.++...|..... +.......+|+|+||+++.+.+... ..+.+++++|+|||| +..+.++... +..+....+.+.|
T Consensus 127 ~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah-~~~~~~~~~~-~~~i~~~~~~~~~ 204 (236)
T 2pl3_A 127 SAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD-RILDMGFADT-MNAVIENLPKKRQ 204 (236)
T ss_dssp CEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH-HHHHTTTHHH-HHHHHHTSCTTSE
T ss_pred eEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH-HHhcCCcHHH-HHHHHHhCCCCCe
Confidence 232233321111 1111246799999999999888654 367899999999999 5555444433 5666666666789
Q ss_pred EEEEecccChHH---HHhhccCCCeeecC
Q 014006 153 ILITSATLDGEK---VSKFFSNCPTLNVP 178 (432)
Q Consensus 153 ii~~SAT~~~~~---~~~~~~~~~~i~~~ 178 (432)
+++||||++.+. ...++.++..+.+.
T Consensus 205 ~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 205 TLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp EEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred EEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999998753 34556556555544
No 80
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.88 E-value=7.7e-23 Score=176.09 Aligned_cols=117 Identities=18% Similarity=0.263 Sum_probs=101.8
Q ss_pred HHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeec
Q 014006 202 KTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTN 281 (432)
Q Consensus 202 ~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~ 281 (432)
..+..+... .++++||||++++.++.++..|... ++.+..+||++++++|.++++.|++|..+|||||+
T Consensus 44 ~~L~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~----------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 112 (191)
T 2p6n_A 44 VYLLECLQK-TPPPVLIFAEKKADVDAIHEYLLLK----------GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD 112 (191)
T ss_dssp HHHHHHHTT-SCSCEEEECSCHHHHHHHHHHHHHH----------TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH
T ss_pred HHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 334444433 3568999999999999999999874 77789999999999999999999999999999999
Q ss_pred CcccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCcc
Q 014006 282 IAETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPST 347 (432)
Q Consensus 282 ~~~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~ 347 (432)
++++|+|+|++++||++|+|. +..+|+||+||+||. ++|.++.++++.
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~------------------~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPE------------------EIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCS------------------SHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred chhcCCCcccCCEEEEeCCCC------------------CHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 999999999999999988754 778999999999999 689999999765
No 81
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.88 E-value=1.7e-22 Score=177.02 Aligned_cols=170 Identities=20% Similarity=0.139 Sum_probs=119.3
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcC----CCCCcEEEecccchhhhHHHHHHHHHHhCC-ccC
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG----YTKSGIIGVTQPRRVAAVSVARRVAQELGV-RLG 78 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~----~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~-~~~ 78 (432)
..+++|.++++.+.+++++++.+||||||| +++.+++.... ...+.++++++|+++++.|+++++.+.... .+.
T Consensus 23 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 102 (207)
T 2gxq_A 23 TPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVV 102 (207)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEE
T ss_pred CCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEE
Confidence 467899999999999999999999999999 33444444332 134568999999999999999998777542 222
Q ss_pred Ceeeeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEE
Q 014006 79 EEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILI 155 (432)
Q Consensus 79 ~~~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~ 155 (432)
...|...... .......+|+++||+++.+.+.... .+.+++++|+|||| +..+.++.. .+..+....+.+.|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah-~~~~~~~~~-~~~~i~~~~~~~~~~i~ 180 (207)
T 2gxq_A 103 AVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD-EMLSMGFEE-EVEALLSATPPSRQTLL 180 (207)
T ss_dssp EECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHH-HHHHTTCHH-HHHHHHHTSCTTSEEEE
T ss_pred EEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChh-HhhccchHH-HHHHHHHhCCccCeEEE
Confidence 2222111000 0112457999999999998886544 68899999999999 444443333 35566666666689999
Q ss_pred EecccChHH---HHhhccCCCeee
Q 014006 156 TSATLDGEK---VSKFFSNCPTLN 176 (432)
Q Consensus 156 ~SAT~~~~~---~~~~~~~~~~i~ 176 (432)
+|||++.+. ...++.++..+.
T Consensus 181 ~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 181 FSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp ECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred EEEecCHHHHHHHHHHcCCCeEEE
Confidence 999998643 445665554443
No 82
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.88 E-value=7e-23 Score=175.62 Aligned_cols=112 Identities=17% Similarity=0.227 Sum_probs=88.9
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccccCC
Q 014006 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDG 291 (432)
Q Consensus 212 ~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gidi~~ 291 (432)
.++++||||++++.++.++..|.. .++.+..+||++++++|..+++.|++|..+|||||+++++|+|+|+
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~----------~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~ 114 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYH----------EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 114 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHH----------TTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH----------cCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCccc
Confidence 567999999999999999999987 3778999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 292 VVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 292 v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
+++||++|.|. +..+|+||+||+||. ++|.|+.++++.+...
T Consensus 115 ~~~VI~~d~p~------------------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 157 (185)
T 2jgn_A 115 VKHVINFDLPS------------------DIEEYVHRIGRTGRVGNLGLATSFFNERNINI 157 (185)
T ss_dssp BSEEEESSCCS------------------SHHHHHHHHTTBCCTTSCEEEEEEECGGGGGG
T ss_pred CCEEEEeCCCC------------------CHHHHHHHccccCCCCCCcEEEEEEchhhHHH
Confidence 99999988754 778999999999999 6899999998776543
No 83
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.87 E-value=5.6e-23 Score=186.67 Aligned_cols=157 Identities=18% Similarity=0.216 Sum_probs=113.7
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcC-----CCCCcEEEecccchhhhHHHHHHHHHHhCC---c
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG-----YTKSGIIGVTQPRRVAAVSVARRVAQELGV---R 76 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~-----~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~---~ 76 (432)
.+++|.++++.+..+++++++|||||||| +++.+++.... ...+.++++++|+++|+.|+++.+.+.... .
T Consensus 77 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~ 156 (262)
T 3ly5_A 77 MTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHT 156 (262)
T ss_dssp CCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSC
T ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCce
Confidence 68999999999999999999999999999 33333333221 124668999999999999999998776542 2
Q ss_pred cCCeeeeeeeecc--cCCCCceEEEcCHHHHHHHHhcCC--CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcE
Q 014006 77 LGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSNP--DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLK 152 (432)
Q Consensus 77 ~~~~~g~~~~~~~--~~~~~~~i~v~T~~~l~~~l~~~~--~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (432)
++...|....... ....+.+|+|+|||++...+.... .+.++++||||||| +..+.++... +..+....+...|
T Consensus 157 ~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah-~l~~~~~~~~-l~~i~~~~~~~~q 234 (262)
T 3ly5_A 157 YGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD-RILDVGFEEE-LKQIIKLLPTRRQ 234 (262)
T ss_dssp EEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH-HHHHTTCHHH-HHHHHHHSCSSSE
T ss_pred EEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH-HHhhhhHHHH-HHHHHHhCCCCCe
Confidence 2222232111111 111347899999999999886654 68899999999999 5555544443 6666676666799
Q ss_pred EEEEecccChHH
Q 014006 153 ILITSATLDGEK 164 (432)
Q Consensus 153 ii~~SAT~~~~~ 164 (432)
+++||||++.+.
T Consensus 235 ~l~~SAT~~~~v 246 (262)
T 3ly5_A 235 TMLFSATQTRKV 246 (262)
T ss_dssp EEEECSSCCHHH
T ss_pred EEEEEecCCHHH
Confidence 999999998754
No 84
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.77 E-value=1.5e-23 Score=177.54 Aligned_cols=120 Identities=15% Similarity=0.210 Sum_probs=105.1
Q ss_pred HHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCc
Q 014006 204 AIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIA 283 (432)
Q Consensus 204 ~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~ 283 (432)
+..+.....++++||||++++.++.++..|... ++.+..+||++++++|..+++.|++|..+|||||+++
T Consensus 21 l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 90 (170)
T 2yjt_D 21 LVHLLKQPEATRSIVFVRKRERVHELANWLREA----------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVA 90 (170)
Confidence 334443455679999999999999999999873 7788999999999999999999999999999999999
Q ss_pred ccccccCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-CCCeEEEecCccchhh
Q 014006 284 ETSLTVDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 284 ~~Gidi~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-~~G~~~~l~~~~~~~~ 351 (432)
++|+|+|++++||++|+|. |..+|+||+||+||. ++|.++.+++..+...
T Consensus 91 ~~Gid~~~~~~Vi~~~~p~------------------~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~ 141 (170)
T 2yjt_D 91 ARGIDIPDVSHVFNFDMPR------------------SGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 141 (170)
Confidence 9999999999999988754 667999999999999 6899999997765443
No 85
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.85 E-value=1.7e-21 Score=176.27 Aligned_cols=171 Identities=21% Similarity=0.185 Sum_probs=116.6
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcC----------CCCCcEEEecccchhhhHHHHHHHHHHhC
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG----------YTKSGIIGVTQPRRVAAVSVARRVAQELG 74 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~----------~~~~~~vl~~~P~~~l~~q~~~~~~~~~~ 74 (432)
.+++|.++++.+.+++++++.|||||||| +++.+++.... ...+.++++++|+++|+.|+++++.+...
T Consensus 46 ~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 125 (253)
T 1wrb_A 46 PTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSL 125 (253)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999 33333333221 12235899999999999999998876543
Q ss_pred C---ccCCeeeeeeeec--ccCCCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhh--
Q 014006 75 V---RLGEEVGYAIRFE--DRTSERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNL-- 146 (432)
Q Consensus 75 ~---~~~~~~g~~~~~~--~~~~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~-- 146 (432)
. .+....|...... ......++|+++||+++.+.+.... .+.+++++|+|||| +..+.++... +..++..
T Consensus 126 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~~~~~~~~~~-~~~i~~~~~ 203 (253)
T 1wrb_A 126 NTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEAD-RMLDMGFEPQ-IRKIIEESN 203 (253)
T ss_dssp TSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHH-HHHHTTCHHH-HHHHHHSSC
T ss_pred cCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHH-HHHhCchHHH-HHHHHhhcc
Confidence 2 2222222111111 1113467999999999999886654 68899999999999 4544444333 4445442
Q ss_pred hcC--CcEEEEEecccChHH---HHhhccCCCeeecC
Q 014006 147 RAS--KLKILITSATLDGEK---VSKFFSNCPTLNVP 178 (432)
Q Consensus 147 ~~~--~~~ii~~SAT~~~~~---~~~~~~~~~~i~~~ 178 (432)
.+. +.|+++||||++.+. ...++.++..+.+.
T Consensus 204 ~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 240 (253)
T 1wrb_A 204 MPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 240 (253)
T ss_dssp CCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred CCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEEC
Confidence 222 579999999998753 45566555555443
No 86
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.82 E-value=1.7e-19 Score=181.63 Aligned_cols=117 Identities=20% Similarity=0.202 Sum_probs=85.4
Q ss_pred hhhHHHHHHHHhcCCEEEEEcCCCCCHH-HH-HHHHHhhcCCCCCcEEEecccchhhhHHHHHHHH---HHhCCccCCee
Q 014006 7 LQYEETIVETVEQNPVVVVIGETGSGKS-TQ-LSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVA---QELGVRLGEEV 81 (432)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~-~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~---~~~~~~~~~~~ 81 (432)
+..|...+..+.+|+ +..++||+||| ++ +|.++... .+..++++.|+++||.|.+..+. +.++.+++..+
T Consensus 81 t~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~ 155 (997)
T 2ipc_A 81 FDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL---TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQ 155 (997)
T ss_dssp CHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT---TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECC
T ss_pred cHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH---hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 678888889999998 88999999999 33 44433333 24578999999999999988764 44566666555
Q ss_pred eeeeeecccCCCCceEEEcCHHHH-HHHHhcC-------CCCC---CCcEEEEeCCCc
Q 014006 82 GYAIRFEDRTSERTLIKYLTDGVL-LREILSN-------PDLS---PYSVIILDEAHE 128 (432)
Q Consensus 82 g~~~~~~~~~~~~~~i~v~T~~~l-~~~l~~~-------~~l~---~~~~vViDE~h~ 128 (432)
|..........-.++|+|+||+.+ .+++..+ ..+. ++.++||||+|.
T Consensus 156 Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 156 HASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp TTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred CCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 533222222223589999999999 7777554 2466 899999999995
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.80 E-value=6.8e-20 Score=183.06 Aligned_cols=126 Identities=13% Similarity=0.063 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEE-
Q 014006 200 ALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIV- 278 (432)
Q Consensus 200 ~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilv- 278 (432)
....+..+.. ..++.+|||++|....+.++..+.. .. ...++.. .+|.++++.|+++. .|++
T Consensus 372 ~~~~l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~------------~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~ 434 (540)
T 2vl7_A 372 YSILLKRIYE-NSSKSVLVFFPSYEMLESVRIHLSG------------IP-VIEENKK--TRHEEVLELMKTGK-YLVML 434 (540)
T ss_dssp HHHHHHHHHH-TCSSEEEEEESCHHHHHHHHTTCTT------------SC-EEESTTT--CCHHHHHHHHHTSC-CEEEE
T ss_pred HHHHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHhcc------------Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEE
Confidence 3333444433 4578999999999999999877643 12 2344443 45777888887764 5666
Q ss_pred -eecCcccccccCC----eEEEEeCCcccceeecCC-------------CCCccceEeeecHhhHHHhhcccCCCC--CC
Q 014006 279 -STNIAETSLTVDG----VVYVIDCGYVKQRQYNPS-------------SGMYSLDVVQISKVQANQRVGRAGRTR--PG 338 (432)
Q Consensus 279 -aT~~~~~Gidi~~----v~~VI~~~~~~~~~~~~~-------------~~~~~~~~~~~s~~~~~qr~GRaGR~~--~G 338 (432)
+|+.+.+|||+|+ +++||..|+|....-|+. .+..+.. .+.......|-+||+-|.. .|
T Consensus 435 V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Q~~GR~iR~~~D~g 513 (540)
T 2vl7_A 435 VMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSII-HDLTAIVIKQTIGRAFRDPNDYV 513 (540)
T ss_dssp EC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHHHHHHHHCCSTTCCC
T ss_pred EecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHH-HHHHHHHHHHHhCCcccCCCccE
Confidence 8899999999997 899999999965542321 1111000 1112567789999999983 46
Q ss_pred eEEEe
Q 014006 339 KCYRL 343 (432)
Q Consensus 339 ~~~~l 343 (432)
..+.+
T Consensus 514 ~v~ll 518 (540)
T 2vl7_A 514 KIYLC 518 (540)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 54433
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.79 E-value=6.1e-20 Score=161.76 Aligned_cols=156 Identities=19% Similarity=0.208 Sum_probs=100.7
Q ss_pred CCchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhc-C----CCCCcEEEecccchhhhHH-HHHHHHHHhCC-
Q 014006 3 NLPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH-G----YTKSGIIGVTQPRRVAAVS-VARRVAQELGV- 75 (432)
Q Consensus 3 ~lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~-~----~~~~~~vl~~~P~~~l~~q-~~~~~~~~~~~- 75 (432)
.++.+++|.++++.+.+++++++.+|||+|||..+..++... . ...+.++++++|+++|+.| ..+.+.+....
T Consensus 31 ~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~ 110 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW 110 (216)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTT
T ss_pred CCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccC
Confidence 467899999999999999999999999999994333332221 1 1235689999999999999 55556555432
Q ss_pred -ccCCeeeeeeeecc--cCCCCceEEEcCHHHHHHHHhcC-------CCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 76 -RLGEEVGYAIRFED--RTSERTLIKYLTDGVLLREILSN-------PDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 76 -~~~~~~g~~~~~~~--~~~~~~~i~v~T~~~l~~~l~~~-------~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
.+....|....... ......+|+++||+.+.+.+... ..+.++++||+|||| +..+.++...++..+..
T Consensus 111 ~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah-~~~~~~~~~~~~~~~~~ 189 (216)
T 3b6e_A 111 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECH-HTNKEAVYNNIMRHYLM 189 (216)
T ss_dssp SCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHHHHHHH
T ss_pred ceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECch-hhccCCcHHHHHHHHHH
Confidence 33222231111000 11134789999999999888653 357889999999999 55555455554444433
Q ss_pred hh-------------cCCcEEEEEecc
Q 014006 146 LR-------------ASKLKILITSAT 159 (432)
Q Consensus 146 ~~-------------~~~~~ii~~SAT 159 (432)
.. ....++++||||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 190 QKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HhcccccccccccCCCCcceEEEeecC
Confidence 22 134899999998
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.72 E-value=7.4e-18 Score=154.75 Aligned_cols=150 Identities=12% Similarity=0.028 Sum_probs=101.3
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeee
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~ 83 (432)
+..+++|.++++.+.++++.++++|||+|||..+..++.........++++++|+++|+.|..+++.+..... ...++.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~-~~~~~~ 190 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFS-HAMIKK 190 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCC-GGGEEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccc-cceEEE
Confidence 4678899999999888888899999999999443333332211233489999999999999999997764322 111211
Q ss_pred eeee---cccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 84 AIRF---EDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 84 ~~~~---~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
-... ........+|+++|++.+.+.. ...+.++++||+|||| +..+ . .+..++.......+++++|||+
T Consensus 191 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~--~~~~~~~~~vIiDEaH-~~~~-~----~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECH-LATG-K----SISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp CSTTCSSTTCCCTTCSEEEECHHHHTTSC--GGGGGGEEEEEEETGG-GCCH-H----HHHHHTTTCTTCCEEEEECSSC
T ss_pred EeCCCcchhhhccCCcEEEEchHHHHhhH--HHHHhhCCEEEEECCc-cCCc-c----cHHHHHHHhhcCCeEEEEeCCC
Confidence 1111 1111256899999998775331 1246788999999999 4442 2 2444555443458999999999
Q ss_pred Ch
Q 014006 161 DG 162 (432)
Q Consensus 161 ~~ 162 (432)
+.
T Consensus 263 ~~ 264 (282)
T 1rif_A 263 RD 264 (282)
T ss_dssp CT
T ss_pred CC
Confidence 64
No 90
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.69 E-value=1.2e-16 Score=142.31 Aligned_cols=139 Identities=19% Similarity=0.186 Sum_probs=100.2
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCc-cCCeee
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR-LGEEVG 82 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~-~~~~~g 82 (432)
+..+++|.++++.+.+++++++++|||+|||.++..++... +.++++++|+++|+.|..+.+.+ ++.. ++...|
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~~g 166 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSG 166 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEESS
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEEeC
Confidence 46789999999999999999999999999996555454443 45788999999999999998877 6554 333333
Q ss_pred eeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccCh
Q 014006 83 YAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (432)
Q Consensus 83 ~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~ 162 (432)
......+|+++|++.+...... ...++++|||||+| +..+..+ +.+....+ ..+++++|||+..
T Consensus 167 -------~~~~~~~i~v~T~~~l~~~~~~--~~~~~~llIiDEaH-~l~~~~~-----~~i~~~~~-~~~~l~LSATp~r 230 (237)
T 2fz4_A 167 -------RIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVH-HLPAESY-----VQIAQMSI-APFRLGLTATFER 230 (237)
T ss_dssp -------SCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEECSS-CCCTTTH-----HHHHHTCC-CSEEEEEEESCC-
T ss_pred -------CCCCcCCEEEEeHHHHHhhHHH--hcccCCEEEEECCc-cCCChHH-----HHHHHhcc-CCEEEEEecCCCC
Confidence 1223578999999988765532 23468999999999 4444332 23334444 3789999999864
Q ss_pred H
Q 014006 163 E 163 (432)
Q Consensus 163 ~ 163 (432)
.
T Consensus 231 ~ 231 (237)
T 2fz4_A 231 E 231 (237)
T ss_dssp -
T ss_pred C
Confidence 3
No 91
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.67 E-value=1.7e-14 Score=144.53 Aligned_cols=308 Identities=16% Similarity=0.106 Sum_probs=179.2
Q ss_pred CchhhhHHHHHH----HHhcCCEEEEEcCCCCCHH--HHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHh---C
Q 014006 4 LPILQYEETIVE----TVEQNPVVVVIGETGSGKS--TQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQEL---G 74 (432)
Q Consensus 4 lp~~~~q~~i~~----~i~~~~~~ii~apTGsGKT--~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~---~ 74 (432)
+..+++|.++++ ++.+|+++++.||||+||| +++|.+ . .+.+++++.||++|+.|+.+.+.+.. +
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l-~-----~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSL-E-----VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHH-H-----HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHH-h-----CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 346778887665 5568999999999999999 444444 3 35699999999999999987764331 2
Q ss_pred CccCCeeeeee---ee-----------------------------c---------------------ccCCCCceEEEcC
Q 014006 75 VRLGEEVGYAI---RF-----------------------------E---------------------DRTSERTLIKYLT 101 (432)
Q Consensus 75 ~~~~~~~g~~~---~~-----------------------------~---------------------~~~~~~~~i~v~T 101 (432)
.+.....|... .. + ......++|+|+|
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 22211112000 00 0 0001357999999
Q ss_pred HHHHHHHHhcCC--CCCCCcEEEEeCCCcCCCCH----------------------------------------------
Q 014006 102 DGVLLREILSNP--DLSPYSVIILDEAHERSLNT---------------------------------------------- 133 (432)
Q Consensus 102 ~~~l~~~l~~~~--~l~~~~~vViDE~h~~~~~~---------------------------------------------- 133 (432)
++.|.+...... ...+..++||||||. ..+.
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~vIiDEAHn-l~d~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~ 234 (551)
T 3crv_A 156 YPYFFIDRYREFIDIDLREYMIVIDEAHN-LDKVNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKY 234 (551)
T ss_dssp THHHHCHHHHTTSCCCSTTEEEEETTGGG-GGGGGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSC
T ss_pred chHhcCHHHHHhcCCCcCCeEEEEecccc-hHHHHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 999988764432 234678999999994 3320
Q ss_pred -----------HHHHHHH----------------------------HHHHh------------------------hhcCC
Q 014006 134 -----------DILLGLV----------------------------KRLVN------------------------LRASK 150 (432)
Q Consensus 134 -----------~~~~~~l----------------------------~~~~~------------------------~~~~~ 150 (432)
+.+..+. ..+.. .....
T Consensus 235 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~ 314 (551)
T 3crv_A 235 IKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDN 314 (551)
T ss_dssp EECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCT
T ss_pred cccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhcc
Confidence 0000000 00000 01122
Q ss_pred -cEEEEEecccCh-HHHHhhccCC-Cee----ec-CCCCCcee-EEeCC-C-C------CcchHHHHHHHHHHHHhcCCC
Q 014006 151 -LKILITSATLDG-EKVSKFFSNC-PTL----NV-PGKLYPVE-ILHSK-E-R------PTSYLESALKTAIDIHVREPE 213 (432)
Q Consensus 151 -~~ii~~SAT~~~-~~~~~~~~~~-~~i----~~-~~~~~~~~-~~~~~-~-~------~~~~~~~~~~~~~~~~~~~~~ 213 (432)
..+|++|||+.+ +.+.+.++-. +.. .. -+.+++-+ ..+.. . + ...+.....+.+..+.. ..+
T Consensus 315 ~~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~-~~~ 393 (551)
T 3crv_A 315 ELSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYF-QAK 393 (551)
T ss_dssp TCEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHH-HCS
T ss_pred CceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHH-hCC
Confidence 589999999965 3355555432 221 10 11112111 11111 0 0 12234444445554443 356
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEee--cCcccccccC-
Q 014006 214 GDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVST--NIAETSLTVD- 290 (432)
Q Consensus 214 ~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT--~~~~~Gidi~- 290 (432)
|.+|||++|.+..+.+++. .+..+..-..+++.++..+.++ +++ --|++|| ..+..|||+|
T Consensus 394 g~~lvlF~Sy~~l~~v~~~-------------~~~~v~~q~~~~~~~~~~~~~~--~~~-~~vl~~v~gg~~~EGiD~~d 457 (551)
T 3crv_A 394 ANVLVVFPSYEIMDRVMSR-------------ISLPKYVESEDSSVEDLYSAIS--ANN-KVLIGSVGKGKLAEGIELRN 457 (551)
T ss_dssp SEEEEEESCHHHHHHHHTT-------------CCSSEEECCSSCCHHHHHHHTT--SSS-SCEEEEESSCCSCCSSCCEE
T ss_pred CCEEEEecCHHHHHHHHHh-------------cCCcEEEcCCCCCHHHHHHHHH--hcC-CeEEEEEecceecccccccc
Confidence 7999999999999988861 2333444444566666555554 233 3799998 6999999999
Q ss_pred ----CeEEEEeCCcccceeecCCC--------------CCccceEeeecHhhHHHhhcccCCCCC
Q 014006 291 ----GVVYVIDCGYVKQRQYNPSS--------------GMYSLDVVQISKVQANQRVGRAGRTRP 337 (432)
Q Consensus 291 ----~v~~VI~~~~~~~~~~~~~~--------------~~~~~~~~~~s~~~~~qr~GRaGR~~~ 337 (432)
..+.||-.|+|...- ||.. ++......| ......|-+||+=|...
T Consensus 458 ~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~ 520 (551)
T 3crv_A 458 NDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVN 520 (551)
T ss_dssp TTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTT
T ss_pred cCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCC
Confidence 478999899887654 4321 220001222 45567799999999854
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.56 E-value=1.6e-15 Score=137.45 Aligned_cols=113 Identities=14% Similarity=0.114 Sum_probs=85.8
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCC-ccE-EEEeecCccccccc
Q 014006 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPN-CRR-FIVSTNIAETSLTV 289 (432)
Q Consensus 212 ~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g-~~~-ilvaT~~~~~Gidi 289 (432)
.+.++|||++++..++.+...|... .++.+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|+
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~---------~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl 181 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKE---------LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINL 181 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH---------HCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCC
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHh---------cCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCc
Confidence 4679999999999999999999874 256677899999999999999999988 666 78999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCCC---CCeEEEecCccchhh
Q 014006 290 DGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRTR---PGKCYRLYPSTVYHD 351 (432)
Q Consensus 290 ~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~~---~G~~~~l~~~~~~~~ 351 (432)
+++++||++|.+. +...|.||+||++|.+ +-.+|.++++...+.
T Consensus 182 ~~a~~VI~~d~~w------------------np~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe 228 (271)
T 1z5z_A 182 TSANRVIHFDRWW------------------NPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 228 (271)
T ss_dssp TTCSEEEECSCCS------------------CTTTC--------------CCEEEEEEETTSHHH
T ss_pred ccCCEEEEECCCC------------------ChhHHHHHHHhccccCCCCceEEEEEeeCCCHHH
Confidence 9999999988654 5567889999999983 345688887765544
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.35 E-value=8e-12 Score=126.23 Aligned_cols=126 Identities=12% Similarity=0.195 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEE
Q 014006 198 ESALKTAIDIHVREPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFI 277 (432)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~il 277 (432)
....+.+..+.. ..+|.+|||++|....+.++..+. . .+.. ...+++..+|..+++.|+ +.-.|+
T Consensus 434 ~~~~~~i~~l~~-~~~g~~lvlF~Sy~~l~~v~~~l~-~---------~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL 498 (620)
T 4a15_A 434 DRMATVIEDIIL-KVKKNTIVYFPSYSLMDRVENRVS-F---------EHMK---EYRGIDQKELYSMLKKFR-RDHGTI 498 (620)
T ss_dssp HHHHHHHHHHHH-HHCSCEEEEESCHHHHHHHTSSCC-S---------CCEE---CCTTCCSHHHHHHHHHHT-TSCCEE
T ss_pred HHHHHHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHHH-h---------cchh---ccCCCChhHHHHHHHHhc-cCCcEE
Confidence 334444444443 346789999999999999888775 1 1222 445566678888989998 888899
Q ss_pred Eeec--CcccccccCC--eEEEEeCCcccceeecCC-------------CCC---ccceEeeecHhhHHHhhcccCCCC-
Q 014006 278 VSTN--IAETSLTVDG--VVYVIDCGYVKQRQYNPS-------------SGM---YSLDVVQISKVQANQRVGRAGRTR- 336 (432)
Q Consensus 278 vaT~--~~~~Gidi~~--v~~VI~~~~~~~~~~~~~-------------~~~---~~~~~~~~s~~~~~qr~GRaGR~~- 336 (432)
++|. .+..|||+|+ .+.||-.|+|-..- ||. +++ +.+ | ......|-+||+=|..
T Consensus 499 ~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~---p-a~~~l~Qa~GRlIR~~~ 573 (620)
T 4a15_A 499 FAVSGGRLSEGINFPGNELEMIILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVY---P-TAIKIRQEIGRLIRSAE 573 (620)
T ss_dssp EEETTSCC--------CCCCEEEESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHH---H-HHHHHHHHHHTTCCSTT
T ss_pred EEEecCceeccccCCCCceEEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHH---H-HHHHHHHHhCccccCCC
Confidence 9985 8999999985 57888889886542 221 111 111 2 3456789999999984
Q ss_pred -CCeEEEe
Q 014006 337 -PGKCYRL 343 (432)
Q Consensus 337 -~G~~~~l 343 (432)
.|..+.+
T Consensus 574 D~G~v~ll 581 (620)
T 4a15_A 574 DTGACVIL 581 (620)
T ss_dssp CCEEEEEE
T ss_pred ceEEEEEE
Confidence 3544443
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.73 E-value=3.5e-08 Score=99.58 Aligned_cols=140 Identities=15% Similarity=0.218 Sum_probs=78.8
Q ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcC---CCCCcEEEecccchhhhHHHHHHHHHH---hCCccCCee
Q 014006 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHG---YTKSGIIGVTQPRRVAAVSVARRVAQE---LGVRLGEEV 81 (432)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~---~~~~~~vl~~~P~~~l~~q~~~~~~~~---~~~~~~~~~ 81 (432)
..|.+++..+..+++++++|++|||||+.+..++.... ...+.+++++.||..++.++.+.+... ++.......
T Consensus 152 ~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~~ 231 (608)
T 1w36_D 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKK 231 (608)
T ss_dssp CHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCCC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHHh
Confidence 45888888888999999999999999966554443321 134568999999999999887765432 221110000
Q ss_pred eeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q 014006 82 GYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (432)
Q Consensus 82 g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SA 158 (432)
+ ...... .-..++-.+|+.. ..........+++++|||||+ +++...+ ..++...+.+.|+|++.=
T Consensus 232 ~--~~~~~~--Tih~ll~~~~~~~-~~~~~~~~~l~~d~lIIDEAs--ml~~~~~----~~Ll~~l~~~~~liLvGD 297 (608)
T 1w36_D 232 R--IPEDAS--TLHRLLGAQPGSQ-RLRHHAGNPLHLDVLVVDEAS--MIDLPMM----SRLIDALPDHARVIFLGD 297 (608)
T ss_dssp S--CSCCCB--TTTSCC------------CTTSCCSCSEEEECSGG--GCBHHHH----HHHHHTCCTTCEEEEEEC
T ss_pred c--cchhhh--hhHhhhccCCCch-HHHhccCCCCCCCEEEEechh--hCCHHHH----HHHHHhCCCCCEEEEEcc
Confidence 0 000000 0011111223221 111111223378999999999 6775443 444445556688888763
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.35 E-value=1e-06 Score=88.00 Aligned_cols=126 Identities=17% Similarity=0.295 Sum_probs=77.7
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeee
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGY 83 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~ 83 (432)
..+.+.|.+++..+..++.++|.|+.|||||+++..++..... .+.+++++.||...+..+.+.. +.... ++
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~-~g~~Vl~~ApT~~Aa~~L~e~~----~~~a~-Ti-- 259 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAES-LGLEVGLCAPTGKAARRLGEVT----GRTAS-TV-- 259 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHH----TSCEE-EH--
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEecCcHHHHHHhHhhh----cccHH-HH--
Confidence 3467789999999999999999999999999777666654432 4567888999988887665533 21100 00
Q ss_pred eeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 84 AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 84 ~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
......... -+. .......+.++|||||++ +++...+.. ++...+.+.++|++.
T Consensus 260 ----h~ll~~~~~-~~~---------~~~~~~~~~dvlIIDEas--ml~~~~~~~----Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 260 ----HRLLGYGPQ-GFR---------HNHLEPAPYDLLIVDEVS--MMGDALMLS----LLAAVPPGARVLLVG 313 (574)
T ss_dssp ----HHHTTEETT-EES---------CSSSSCCSCSEEEECCGG--GCCHHHHHH----HHTTSCTTCEEEEEE
T ss_pred ----HHHHcCCcc-hhh---------hhhcccccCCEEEEcCcc--CCCHHHHHH----HHHhCcCCCEEEEEe
Confidence 000000000 000 011133468899999999 677664444 344444556777764
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.24 E-value=1.9e-06 Score=84.14 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=45.8
Q ss_pred hhhhHHHHHHHHhc----CC-EEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHH
Q 014006 6 ILQYEETIVETVEQ----NP-VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV 69 (432)
Q Consensus 6 ~~~~q~~i~~~i~~----~~-~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~ 69 (432)
+.+.|.+++..+.. ++ .++|.|+.|||||+++..++......+...++++.||...+..+.+++
T Consensus 26 Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 26 LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 45677787776532 34 999999999999977766665544333347888999988877666543
No 97
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.19 E-value=4.6e-06 Score=70.29 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=23.3
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
+++.+++.||+|+|||+++..++....
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999888877654
No 98
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.97 E-value=1.3e-05 Score=65.19 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.2
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
+++.+++.||+|+|||+++..+.....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999998887776554
No 99
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.91 E-value=5.9e-05 Score=65.44 Aligned_cols=115 Identities=19% Similarity=0.201 Sum_probs=64.9
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceE
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 97 (432)
..|...++.|++|+||||.+...+..... .+.+++++.|...-. .. ..+....|. ....+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~-~g~kVli~~~~~d~r---~~-------~~i~srlG~---------~~~~~ 69 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY-ADVKYLVFKPKIDTR---SI-------RNIQSRTGT---------SLPSV 69 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCCGG---GC-------SSCCCCCCC---------SSCCE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEEeccCch---HH-------HHHHHhcCC---------Ccccc
Confidence 45778899999999999887777665543 345677776654311 00 011111110 00112
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SA 158 (432)
.+.+...+...+.....-.++++|||||++ .++.+.. ..+..+... +.++|+..-
T Consensus 70 ~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ--~l~~~~v-e~l~~L~~~---gi~Vil~Gl 124 (223)
T 2b8t_A 70 EVESAPEILNYIMSNSFNDETKVIGIDEVQ--FFDDRIC-EVANILAEN---GFVVIISGL 124 (223)
T ss_dssp EESSTHHHHHHHHSTTSCTTCCEEEECSGG--GSCTHHH-HHHHHHHHT---TCEEEEECC
T ss_pred ccCCHHHHHHHHHHHhhCCCCCEEEEecCc--cCcHHHH-HHHHHHHhC---CCeEEEEec
Confidence 244556666666544334568999999998 4555433 334444432 467776654
No 100
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.83 E-value=1.6e-05 Score=71.26 Aligned_cols=150 Identities=19% Similarity=0.129 Sum_probs=76.7
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhH-HHHHHHH---HHhCCccCCeeeeeeee-----
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAV-SVARRVA---QELGVRLGEEVGYAIRF----- 87 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~-q~~~~~~---~~~~~~~~~~~g~~~~~----- 87 (432)
+.+|+.+.+.||+||||||++..+........|...+.-.+...... +..+.+. +........++.....+
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY 113 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc
Confidence 46799999999999999999998888766555543332222211111 1111100 00000000000000000
Q ss_pred ----------------cccCCCCceEEEcCHHHHHHHHhcCCCCC------CCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 88 ----------------EDRTSERTLIKYLTDGVLLREILSNPDLS------PYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 88 ----------------~~~~~~~~~i~v~T~~~l~~~l~~~~~l~------~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
.-....+..+--.+.|...+..+....+. +.+++++||.- ..+|......+++.+..
T Consensus 114 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPt-s~LD~~~~~~i~~~l~~ 192 (266)
T 4g1u_C 114 GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPT-SALDLYHQQHTLRLLRQ 192 (266)
T ss_dssp CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCC-SSCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCcc-ccCCHHHHHHHHHHHHH
Confidence 00000011111246676666655544454 78999999998 78998887776666655
Q ss_pred hhcCC-cEEEEEecccChHHHHhhc
Q 014006 146 LRASK-LKILITSATLDGEKVSKFF 169 (432)
Q Consensus 146 ~~~~~-~~ii~~SAT~~~~~~~~~~ 169 (432)
....+ .-+|+. |.+.+.+..+.
T Consensus 193 l~~~~~~tvi~v--tHdl~~~~~~~ 215 (266)
T 4g1u_C 193 LTRQEPLAVCCV--LHDLNLAALYA 215 (266)
T ss_dssp HHHHSSEEEEEE--CSCHHHHHHHC
T ss_pred HHHcCCCEEEEE--EcCHHHHHHhC
Confidence 44332 334444 44555555554
No 101
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.82 E-value=4.6e-05 Score=66.47 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=41.5
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.|..
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt-~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 199 (224)
T 2pcj_A 141 LSGGEQQRVAIARALANEPILLFADEPT-GNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199 (224)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5677777777666678889999999998 7899888777666665544333455555443
No 102
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.78 E-value=0.00019 Score=68.06 Aligned_cols=119 Identities=16% Similarity=0.251 Sum_probs=61.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecc-cchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEEEc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKYL 100 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~-P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~ 100 (432)
.+++.||+|+|||+++..+........+..++.+. .......+....+...++..... .| .
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~-~~-----------------~ 107 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPR-RG-----------------L 107 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCS-SC-----------------C
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCC-CC-----------------C
Confidence 89999999999999988877665433233444432 22222334444444444321100 00 1
Q ss_pred CHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc---CCcEEEEEeccc
Q 014006 101 TDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA---SKLKILITSATL 160 (432)
Q Consensus 101 T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~---~~~~ii~~SAT~ 160 (432)
+.+.+...+.... ...+..+||+||+| .++.+.+..+++.+..... .+..+|+.|...
T Consensus 108 ~~~~~~~~l~~~l~~~~~~~vlilDE~~--~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 108 SRDEFLALLVEHLRERDLYMFLVLDDAF--NLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEETGG--GSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CHHHHHHHHHHHHhhcCCeEEEEEECcc--ccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 2222222221100 12346799999999 3466665554444332222 346677666544
No 103
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00034 Score=64.07 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=64.7
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCC---C---CcEEEecc-cchhhhHHHHHHHHHHhCCccCCeeeeeeeecccC
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYT---K---SGIIGVTQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRT 91 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~---~---~~~vl~~~-P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~ 91 (432)
.+.++++.||+|+|||+++..++...... . ....+.+. ....-..+.+..+.+.+. +....
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~---g~~~~--------- 111 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAIS---KENLC--------- 111 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHS---CCC-----------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhc---CCCCC---------
Confidence 46689999999999998877776655211 1 22333322 222222344444444331 11000
Q ss_pred CCCceEEEcCHHHHHHHHhcCC-CCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccC
Q 014006 92 SERTLIKYLTDGVLLREILSNP-DLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (432)
Q Consensus 92 ~~~~~i~v~T~~~l~~~l~~~~-~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~ 161 (432)
.. .+...+..++.... .-...-+|++||+| +....+.+..+++.. .....+.-+|+.++|++
T Consensus 112 ~~------~~~~~L~~~f~~~~~~~~~~~ii~lDE~d-~l~~q~~L~~l~~~~-~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 112 GD------ISLEALNFYITNVPKAKKRKTLILIQNPE-NLLSEKILQYFEKWI-SSKNSKLSIICVGGHNV 174 (318)
T ss_dssp CC------CCHHHHHHHHHHSCGGGSCEEEEEEECCS-SSCCTHHHHHHHHHH-HCSSCCEEEEEECCSSC
T ss_pred ch------HHHHHHHHHHHHhhhccCCceEEEEecHH-HhhcchHHHHHHhcc-cccCCcEEEEEEecCcc
Confidence 00 12334444443221 22456699999999 455666666655432 22222367788898874
No 104
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.74 E-value=7.5e-05 Score=65.40 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=28.7
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEec
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~ 55 (432)
.+..|+.+++.||+|||||+++..++.......+...++.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4567899999999999999988887765543333343433
No 105
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.74 E-value=3.9e-05 Score=71.48 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=45.5
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|+..+..+......+.+++++||.- ..+|......+++.+...... +.-+|+.|. +.+.+..+.
T Consensus 164 LSGGqkQRVaIArAL~~~P~lLLlDEPT-s~LD~~~~~~i~~lL~~l~~~~g~Tii~vTH--dl~~~~~~a 231 (366)
T 3tui_C 164 LSGGQKQRVAIARALASNPKVLLCDQAT-SALDPATTRSILELLKDINRRLGLTILLITH--EMDVVKRIC 231 (366)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHHSCCEEEEEES--CHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCC-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEec--CHHHHHHhC
Confidence 4677777777766678899999999998 789988877766655554322 455666655 444444443
No 106
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.68 E-value=0.00044 Score=55.70 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=27.0
Q ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
...+.+-.....+.++++.||+|+|||+++..+....
T Consensus 12 ~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 12 QYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp HHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3344444445678899999999999998887776544
No 107
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.67 E-value=2.4e-05 Score=70.37 Aligned_cols=61 Identities=25% Similarity=0.311 Sum_probs=42.2
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhh-cCCcEEEEEecccC
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-ASKLKILITSATLD 161 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~-~~~~~ii~~SAT~~ 161 (432)
.+.|+..+..+......+.+++++||.- ..+|......+++.+.... ..+.-+|+.|.-++
T Consensus 144 LSgGqkQRv~iAraL~~~P~lLlLDEPt-s~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 144 LSFGQKKRVAIAGVLVMEPKVLILDEPT-AGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEECTT-TTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 4666666666666667889999999998 7889888776666555543 22456777666554
No 108
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.67 E-value=6.9e-05 Score=65.86 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=41.8
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEeccc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATL 160 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~ 160 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+++.+...... +.-+|+.|.-+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPt-s~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~ 206 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPT-WALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 4677777776666667889999999998 788988877766666554332 34566655443
No 109
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.65 E-value=5.4e-05 Score=67.40 Aligned_cols=67 Identities=19% Similarity=0.201 Sum_probs=44.9
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.| -+.+.+..+.
T Consensus 147 LSgGq~qRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tiiivt--Hd~~~~~~~~ 213 (256)
T 1vpl_A 147 YSKGMVRKLLIARALMVNPRLAILDEPT-SGLDVLNAREVRKILKQASQEGLTILVSS--HNMLEVEFLC 213 (256)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEEE--CCHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCc-cccCHHHHHHHHHHHHHHHhCCCEEEEEc--CCHHHHHHHC
Confidence 5677777776666678889999999998 78998887776666655443334455544 4444444443
No 110
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.64 E-value=4.9e-05 Score=65.66 Aligned_cols=140 Identities=22% Similarity=0.274 Sum_probs=74.8
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEE-------------ec-c-cc---hhhhHHHHHHHHHHhCCccC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-------------VT-Q-PR---RVAAVSVARRVAQELGVRLG 78 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl-------------~~-~-P~---~~l~~q~~~~~~~~~~~~~~ 78 (432)
+.+|+.+.+.||+||||||++..+........|...+ ++ + |. ...+.+.........+....
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~ 111 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN 111 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchH
Confidence 4678999999999999999999888766543332211 11 1 10 00111111111111110000
Q ss_pred -Ceeee---eeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEE
Q 014006 79 -EEVGY---AIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKIL 154 (432)
Q Consensus 79 -~~~g~---~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii 154 (432)
..+.. ....... +..+--.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|
T Consensus 112 ~~~~~~~l~~~gl~~~---~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~~~~~g~tii 187 (214)
T 1sgw_A 112 KNEIMDALESVEVLDL---KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV-VAIDEDSKHKVLKSILEILKEKGIVI 187 (214)
T ss_dssp HHHHHHHHHHTTCCCT---TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT-TTSCTTTHHHHHHHHHHHHHHHSEEE
T ss_pred HHHHHHHHHHcCCCcC---CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 00000 0000000 1122235788888887777788899999999998 67777776665555544332234566
Q ss_pred EEeccc
Q 014006 155 ITSATL 160 (432)
Q Consensus 155 ~~SAT~ 160 (432)
+.|..+
T Consensus 188 ivtHd~ 193 (214)
T 1sgw_A 188 ISSREE 193 (214)
T ss_dssp EEESSC
T ss_pred EEeCCH
Confidence 665544
No 111
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.62 E-value=0.00029 Score=56.59 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=24.8
Q ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHH
Q 014006 8 QYEETIVETVEQNPVVVVIGETGSGKSTQLSQIL 41 (432)
Q Consensus 8 ~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~ 41 (432)
...+.+-.....+.++++.||+|+|||+++..+.
T Consensus 15 ~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 15 EMNREVEAAAKRTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGC
T ss_pred HHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHH
Confidence 3444444455677899999999999997776553
No 112
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.61 E-value=0.00037 Score=66.53 Aligned_cols=125 Identities=18% Similarity=0.187 Sum_probs=70.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEec-ccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEE
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~-~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 98 (432)
+..++++|++|+||||++..++......++...++. -+.+..+.++...+++..+..+.. ....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~----------~~~~----- 161 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYG----------EPNN----- 161 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEEC----------CTTC-----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceee----------cccc-----
Confidence 357888999999999887777665544433343433 345555555555555544432110 0000
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCC--CCHHHHHHHHHHHHhhhcCCcEEEEEecccC
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERS--LNTDILLGLVKRLVNLRASKLKILITSATLD 161 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~--~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~ 161 (432)
..|..+...........+++++|||++.... .+...... +..+........-++.++|+..
T Consensus 162 -~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~e-l~~i~~~~~pd~vlLVlDa~~g 224 (433)
T 3kl4_A 162 -QNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEE-MKEMYDVLKPDDVILVIDASIG 224 (433)
T ss_dssp -SCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHH-HHHHHHHHCCSEEEEEEEGGGG
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHH-HHHHHHhhCCcceEEEEeCccc
Confidence 1244443333333334678999999998333 45554444 4445444333456777888763
No 113
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.61 E-value=0.0018 Score=60.80 Aligned_cols=70 Identities=16% Similarity=0.284 Sum_probs=53.4
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhh-cCCCCCcEEEecccchhhhHHHHHHHHHHh
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHR-HGYTKSGIIGVTQPRRVAAVSVARRVAQEL 73 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~-~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~ 73 (432)
+.+.++|.+++..+...+.+++..+-+.|||+++..++.. ....++..++++.|++..|..+.+.+....
T Consensus 162 ~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 5678999999998866788899999999999554433332 233456789999999999988887765544
No 114
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.60 E-value=0.00018 Score=60.79 Aligned_cols=41 Identities=29% Similarity=0.347 Sum_probs=30.2
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccch
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR 59 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~ 59 (432)
..|+..++.||.||||||.+...+.... ..+.+++++.|..
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKPEI 46 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC-
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEecc
Confidence 3567889999999999977776666553 3456788887763
No 115
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.59 E-value=0.00016 Score=61.80 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
..+++.||+|+|||+++..+.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 7899999999999988877766554
No 116
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.58 E-value=3.3e-05 Score=68.49 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=40.3
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+++.+.... .+.-+|+.|.-+
T Consensus 146 LSgGq~qRv~iAraL~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~~~-~g~tviivtH~~ 204 (247)
T 2ff7_A 146 LSGGQRQRIAIARALVNNPKILIFDEAT-SALDYESEHVIMRNMHKIC-KGRTVIIIAHRL 204 (247)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEECCCC-SCCCHHHHHHHHHHHHHHH-TTSEEEEECSSG
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCH
Confidence 4566666666555567788999999998 7899888777666665543 335555555443
No 117
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.58 E-value=0.00012 Score=61.71 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=28.7
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccch
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR 59 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~ 59 (432)
.|...++.||.|+||||++..++..... .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~-~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL-GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH-TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeecc
Confidence 4678899999999999887666654432 345777777763
No 118
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.57 E-value=5.6e-05 Score=67.52 Aligned_cols=67 Identities=12% Similarity=0.199 Sum_probs=44.5
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+++.+......+.-+|+. |-+.+.+..+.
T Consensus 160 LSgGqkQRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~~~~~l~~l~~~g~tvi~v--tHd~~~~~~~~ 226 (263)
T 2olj_A 160 LSGGQAQRVAIARALAMEPKIMLFDEPT-SALDPEMVGEVLSVMKQLANEGMTMVVV--THEMGFAREVG 226 (263)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHTTCEEEEE--CSCHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEE--cCCHHHHHHhC
Confidence 4666666666666567888999999998 7899988777666665544333445554 44544454444
No 119
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.56 E-value=0.00023 Score=63.23 Aligned_cols=136 Identities=21% Similarity=0.294 Sum_probs=77.6
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcE-----EEec-c-cc---hhhhHHHHH-------------------
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----IGVT-Q-PR---RVAAVSVAR------------------- 67 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~-----vl~~-~-P~---~~l~~q~~~------------------- 67 (432)
+.+|+.+.+.||+||||||++..+........|.. +-++ + |. ...+.+...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 107 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQ 107 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHH
Confidence 46889999999999999999998887765443321 2222 1 10 001111110
Q ss_pred ---HHHHHhCCccCCeeeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHH
Q 014006 68 ---RVAQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (432)
Q Consensus 68 ---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~ 144 (432)
.+.+.++. .... +..+--.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+.
T Consensus 108 ~~~~~l~~~~l------------~~~~--~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~ 172 (253)
T 2nq2_C 108 VAMQALDYLNL------------THLA--KREFTSLSGGQRQLILIARAIASECKLILLDEPT-SALDLANQDIVLSLLI 172 (253)
T ss_dssp HHHHHHHHTTC------------GGGT--TSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSS-TTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC------------hHHh--cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHH
Confidence 00011110 0000 1112225677777777666667788999999998 7899988777666665
Q ss_pred hhhcC-CcEEEEEecccChHHHHhhc
Q 014006 145 NLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 145 ~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
..... +.-+|+.| .+.+.+..+.
T Consensus 173 ~l~~~~g~tvi~vt--Hd~~~~~~~~ 196 (253)
T 2nq2_C 173 DLAQSQNMTVVFTT--HQPNQVVAIA 196 (253)
T ss_dssp HHHHTSCCEEEEEE--SCHHHHHHHC
T ss_pred HHHHhcCCEEEEEe--cCHHHHHHhC
Confidence 54433 34455554 4444444444
No 120
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.54 E-value=5.7e-05 Score=67.92 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=40.5
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEec
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSA 158 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SA 158 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+++.+...... +.-+|+.|.
T Consensus 157 LSgGq~QRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~~~~~~g~tviivtH 215 (271)
T 2ixe_A 157 LSGGQRQAVALARALIRKPRLLILDNAT-SALDAGNQLRVQRLLYESPEWASRTVLLITQ 215 (271)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTT-TTCCHHHHHHHHHHHHHCTTTTTSEEEEECS
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCc-cCCCHHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 4667666666666667889999999998 789998877766666654332 344555443
No 121
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.53 E-value=5e-05 Score=67.01 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=42.8
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+++.+......+.-+|+.|. +.+.+..+.
T Consensus 140 LSgGq~qrv~lAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~~~~~g~tvi~vtH--d~~~~~~~~ 206 (240)
T 1ji0_A 140 LSGGEQQMLAIGRALMSRPKLLMMDEPS-LGLAPILVSEVFEVIQKINQEGTTILLVEQ--NALGALKVA 206 (240)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEECTT-TTCCHHHHHHHHHHHHHHHHTTCCEEEEES--CHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEEec--CHHHHHHhC
Confidence 4555555555555557788999999998 789998877766666554433344555554 444444443
No 122
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.52 E-value=0.00076 Score=61.35 Aligned_cols=128 Identities=24% Similarity=0.288 Sum_probs=68.4
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEE-e-cccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCce
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIG-V-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTL 96 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl-~-~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 96 (432)
+++.+++.|++|+||||++..+........|.+++ + .-+.+..+.++...+.+..+.... ..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~-------------- 167 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VC-------------- 167 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BC--------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeE--ec--------------
Confidence 46789999999999998888777666543443333 3 334455555444444433332110 00
Q ss_pred EEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 97 IKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 97 i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
..+..+...+. .+.+.+++|+|.+-....+...... +..+.........++.+.||.....+.++.
T Consensus 168 ---~~~~~l~~al~---~~~~~dlvIiDT~G~~~~~~~~~~e-l~~~l~~~~~~~~~lVl~at~~~~~~~~~~ 233 (296)
T 2px0_A 168 ---YTKEEFQQAKE---LFSEYDHVFVDTAGRNFKDPQYIDE-LKETIPFESSIQSFLVLSATAKYEDMKHIV 233 (296)
T ss_dssp ---SSHHHHHHHHH---HGGGSSEEEEECCCCCTTSHHHHHH-HHHHSCCCTTEEEEEEEETTBCHHHHHHHT
T ss_pred ---CCHHHHHHHHH---HhcCCCEEEEeCCCCChhhHHHHHH-HHHHHhhcCCCeEEEEEECCCCHHHHHHHH
Confidence 12444433332 1367899999987622223233333 333332111223467777887655555543
No 123
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.51 E-value=1.9e-05 Score=72.12 Aligned_cols=62 Identities=23% Similarity=0.255 Sum_probs=40.4
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHH
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKV 165 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~ 165 (432)
.+.|.-.+..+....+.+.+++|+||+- ..+|......+.+.+..... +.-+|+. |.+...+
T Consensus 191 LSGGqrQRvaiARAL~~~p~iLlLDEPt-s~LD~~~~~~i~~~l~~l~~-~~Tvi~i--tH~l~~~ 252 (306)
T 3nh6_A 191 LSGGEKQRVAIARTILKAPGIILLDEAT-SALDTSNERAIQASLAKVCA-NRTTIVV--AHRLSTV 252 (306)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCS-SCCCHHHHHHHHHHHHHHHT-TSEEEEE--CCSHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHHHHHHcC-CCEEEEE--EcChHHH
Confidence 4566666666555566778899999998 78898887776666655443 3444443 4444434
No 124
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.47 E-value=0.0011 Score=58.07 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=25.4
Q ss_pred HHHHHHHhcCC---EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 11 ETIVETVEQNP---VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 11 ~~i~~~i~~~~---~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+.+...+..++ .+++.||+|+|||+++..+....
T Consensus 33 ~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 33 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp HHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34555555555 78999999999998887776554
No 125
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.47 E-value=0.00083 Score=60.11 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=42.3
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+++.+......+.-+|+.|..+
T Consensus 139 LSgGq~qRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~ 198 (266)
T 2yz2_A 139 LSGGEKRRVAIASVIVHEPDILILDEPL-VGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198 (266)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCcc-ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4666666666666667889999999998 78999887776666655543345566665544
No 126
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.47 E-value=0.00073 Score=61.56 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEe
Q 014006 10 EETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (432)
Q Consensus 10 q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~ 54 (432)
-..+.-.+..|+.++|.||+|+||||++..++.......+..+++
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~ 69 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL 69 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 344455577899999999999999999988887765554534443
No 127
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.46 E-value=0.0027 Score=63.79 Aligned_cols=71 Identities=17% Similarity=0.290 Sum_probs=54.5
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHH-hhcCCCCCcEEEecccchhhhHHHHHHHHHHhC
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQIL-HRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG 74 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~-~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~ 74 (432)
+.+.++|..++..+...+..++.++-|+|||+++..++ ......++..++++.|++..+.++...+.....
T Consensus 162 ~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp CCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 56789999999988667889999999999995544332 222334456899999999999998887766654
No 128
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.45 E-value=5e-05 Score=67.78 Aligned_cols=61 Identities=18% Similarity=0.330 Sum_probs=41.5
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccC
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~ 161 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+++.+......+.-+|+.|..++
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 214 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPI-AGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 4566666655555556788999999998 789998877766666554433455666665543
No 129
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.45 E-value=0.00097 Score=63.70 Aligned_cols=125 Identities=17% Similarity=0.208 Sum_probs=68.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEe-cccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEE
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV-TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~-~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 98 (432)
...++++|++|+||||.+..++......+....++ .-|.|..+.++.+.+++..+..+.. ....
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~---------~~~~------ 164 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFG---------NPQE------ 164 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEEC---------CTTC------
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEe---------cCCC------
Confidence 35788999999999987776665554333333333 3466676666666665544432210 0000
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccC
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~ 161 (432)
..|..+.........-.+++++|||.+-....+...... ++.+........-++.+.||..
T Consensus 165 -~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~e-l~~i~~~~~pd~vlLVvDA~~g 225 (443)
T 3dm5_A 165 -KDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEE-MKQISNVIHPHEVILVIDGTIG 225 (443)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHH-HHHHHHHHCCSEEEEEEEGGGG
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHH-HHHHHHhhcCceEEEEEeCCCc
Confidence 124333322221111235889999999732344444433 5555554433456777888864
No 130
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.42 E-value=0.00018 Score=72.79 Aligned_cols=66 Identities=23% Similarity=0.356 Sum_probs=52.8
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHH
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ 71 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~ 71 (432)
+...|.+++..+..+..++|.||+|||||+.+..++.......+.+++++.|+...+.++.+++.+
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 567899999988888899999999999996655555443333567899999999999999888754
No 131
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.40 E-value=0.0005 Score=65.03 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=21.4
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+..+++.||+|+|||+++..+....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999998887776654
No 132
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.40 E-value=0.0032 Score=54.13 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=23.7
Q ss_pred HHHHHHHhcC--CEEEEEcCCCCCHHHHHHHHHhh
Q 014006 11 ETIVETVEQN--PVVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 11 ~~i~~~i~~~--~~~ii~apTGsGKT~~~~~~~~~ 43 (432)
+++.+.+..+ ..+++.||+|+|||+++..+...
T Consensus 27 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 27 QRLKGYVERKNIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp HHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3444555544 35899999999999887766654
No 133
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.39 E-value=6.2e-05 Score=66.69 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=26.9
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYT 47 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~ 47 (432)
+.+|+.+.+.||+||||||++..+.......
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 4689999999999999999999888876655
No 134
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.39 E-value=0.00021 Score=71.78 Aligned_cols=141 Identities=22% Similarity=0.245 Sum_probs=76.3
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHH-HH---HHH---hCCccCCeeeeee----
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVAR-RV---AQE---LGVRLGEEVGYAI---- 85 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~-~~---~~~---~~~~~~~~~g~~~---- 85 (432)
+.+|+.+.+.||+||||||++..+.....+..|...+--.+.........+ .+ .+. +..++...+.+..
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 445 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEY 445 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCC
Confidence 568999999999999999999988887765555433333222211110000 00 000 0000000000000
Q ss_pred eec------------c---cCC------CCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHH
Q 014006 86 RFE------------D---RTS------ERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV 144 (432)
Q Consensus 86 ~~~------------~---~~~------~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~ 144 (432)
..+ . ... -+....-.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+.
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpt-s~LD~~~~~~i~~~l~ 524 (582)
T 3b5x_A 446 TREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEAT-SALDTESERAIQAALD 524 (582)
T ss_pred CHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHH
Confidence 000 0 000 00111235677777777666678889999999998 7899888777666665
Q ss_pred hhhcCCcEEEEEecc
Q 014006 145 NLRASKLKILITSAT 159 (432)
Q Consensus 145 ~~~~~~~~ii~~SAT 159 (432)
.... +.-+|+.|.-
T Consensus 525 ~~~~-~~tvi~itH~ 538 (582)
T 3b5x_A 525 ELQK-NKTVLVIAHR 538 (582)
T ss_pred HHcC-CCEEEEEecC
Confidence 5443 3455555543
No 135
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.38 E-value=0.00022 Score=72.52 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=48.2
Q ss_pred hhhhHHHHHHHHh-cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHH
Q 014006 6 ILQYEETIVETVE-QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ 71 (432)
Q Consensus 6 ~~~~q~~i~~~i~-~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~ 71 (432)
+.+.|.+++..+. +....+|.||+|||||+.+..++.... ..+.+|+++.||...+.++.+++..
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~-~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAV-KQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEcCchHHHHHHHHHHHh
Confidence 5677877777655 566899999999999943333333322 2456899999999999999998854
No 136
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.38 E-value=0.00075 Score=62.76 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=44.3
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~-~~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|+..+..+......+.+++++||.- ..+|......+...+..... .+.-+|+. |.+.+....+.
T Consensus 139 LSGGq~QRValArAL~~~P~lLLLDEPt-s~LD~~~r~~l~~~l~~~~~~~g~tvi~v--THd~~ea~~~a 206 (359)
T 3fvq_A 139 LSGGQQQRAALARALAPDPELILLDEPF-SALDEQLRRQIREDMIAALRANGKSAVFV--SHDREEALQYA 206 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHHTTCEEEEE--CCCHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhCCCEEEEE--eCCHHHHHHHC
Confidence 4677777777666677889999999998 78998887776555554332 23455555 44544444443
No 137
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.37 E-value=0.00055 Score=59.19 Aligned_cols=27 Identities=26% Similarity=0.150 Sum_probs=23.7
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHh
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILH 42 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~ 42 (432)
.+..|+.+++.||+|+|||+++..++.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998888877
No 138
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.34 E-value=0.00049 Score=64.52 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=42.7
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhh
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKF 168 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~ 168 (432)
.+.|+..+..+......+.+++++||.- ..+|......+...+...... +.-+|+.| .+.+.+..+
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPt-s~LD~~~~~~l~~~l~~l~~~~g~tii~vT--Hd~~ea~~~ 200 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPL-SNLDAALRVQMRIEISRLHKRLGRTMIYVT--HDQVEAMTL 200 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHHHCCEEEEEC--SCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHHhCCCEEEEEE--CCHHHHHHh
Confidence 4677766666655556678899999998 789988777666555554322 34555554 454444444
No 139
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.33 E-value=0.00025 Score=62.73 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=23.4
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHH
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQIL 41 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~ 41 (432)
.+.+|+.+.+.||+||||||++..++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 56789999999999999999988777
No 140
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.32 E-value=0.0014 Score=60.41 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=24.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEec
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~ 55 (432)
+..+++.||+|+|||+++..+....... +..++++
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i 71 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYS 71 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEE
Confidence 3589999999999998888777654322 3344444
No 141
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.32 E-value=0.00017 Score=64.52 Aligned_cols=67 Identities=12% Similarity=0.192 Sum_probs=42.4
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+++.+......+.-+|+.| .+.+.+..+.
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~~~~~l~~l~~~g~tvi~vt--Hd~~~~~~~~ 220 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPT-SALDPELVGEVLRIMQQLAEEGKTMVVVT--HEMGFARHVS 220 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHTTCCEEEEC--SCHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHhCCCEEEEEe--CCHHHHHHhC
Confidence 4555555555555556778899999998 78998887776666655433334455554 4444444443
No 142
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.32 E-value=0.0011 Score=58.11 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=21.8
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+..+++.||+|+|||+++..+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999998887776554
No 143
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.31 E-value=0.00032 Score=61.98 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=27.8
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG 50 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~ 50 (432)
+.+|+.+.|.||+||||||++..+........|.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 58 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE 58 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 4678999999999999999999888776554443
No 144
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.31 E-value=0.00018 Score=62.87 Aligned_cols=138 Identities=15% Similarity=0.124 Sum_probs=72.5
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcE-----EEecc--cch--hhhHHHHH-----------HHHHHhCCc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----IGVTQ--PRR--VAAVSVAR-----------RVAQELGVR 76 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~-----vl~~~--P~~--~l~~q~~~-----------~~~~~~~~~ 76 (432)
+.+|+.+.+.||+||||||++..+.....+..|.. +-++. |.- ..+.+... .+.+..+..
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~ 110 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLE 110 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcH
Confidence 46799999999999999999998887765443322 11221 110 01111110 000111100
Q ss_pred cCCeeeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEE
Q 014006 77 LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILIT 156 (432)
Q Consensus 77 ~~~~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~ 156 (432)
. ... ...............-.+.|+..+..+....+.+.+++++||.- ..+|......+.+.++.....+.-+|+.
T Consensus 111 ~--~~~-~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~~~~~~~tvi~v 186 (229)
T 2pze_A 111 E--DIS-KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF-GYLDVLTEKEIFESCVCKLMANKTRILV 186 (229)
T ss_dssp H--HHT-TSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT-TTSCHHHHHHHHHHCCCCCTTTSEEEEE
T ss_pred H--HHH-hCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc-cCCCHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 0 000 00000000000112235788877777766677888999999998 7899888777666543222223445554
Q ss_pred ec
Q 014006 157 SA 158 (432)
Q Consensus 157 SA 158 (432)
|.
T Consensus 187 tH 188 (229)
T 2pze_A 187 TS 188 (229)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 145
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.31 E-value=0.00088 Score=62.28 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=44.7
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+...+...... +.-+|+. |-+.+.+..+.
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~v--THd~~~a~~~a 213 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPF-AAIDTQIRRELRTFVRQVHDEMGVTSVFV--THDQEEALEVA 213 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTT-CCSSHHHHHHHHHHHHHHHHHHTCEEEEE--CSCHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEE--CCCHHHHHHhC
Confidence 5677777777766677889999999997 789988877766555554322 3445554 45555444443
No 146
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.29 E-value=0.0002 Score=62.93 Aligned_cols=141 Identities=16% Similarity=0.217 Sum_probs=74.5
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcE-----EEec-c-cc--hhhhHHHH-----------HHHHHHhCCc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI-----IGVT-Q-PR--RVAAVSVA-----------RRVAQELGVR 76 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~-----vl~~-~-P~--~~l~~q~~-----------~~~~~~~~~~ 76 (432)
+.+|+.+.|.||+||||||++..++....+..|.. +-++ + |. ...+.+.. .++.+..+..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~ 107 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALL 107 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhH
Confidence 46889999999999999999998887665433322 1121 1 10 00011110 0111111100
Q ss_pred cCCeeeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHH--hhhcCCcEEE
Q 014006 77 LGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLV--NLRASKLKIL 154 (432)
Q Consensus 77 ~~~~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~--~~~~~~~~ii 154 (432)
...+.. .............-.+.|+..+..+....+.+.+++++||.- ..+|......+++.+. .....+.-+|
T Consensus 108 --~~~~~~-~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~~~~~~~~~tvi 183 (237)
T 2cbz_A 108 --PDLEIL-PSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL-SAVDAHVGKHIFENVIGPKGMLKNKTRI 183 (237)
T ss_dssp --HHHTTS-TTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT-TTSCHHHHHHHHHHTTSTTSTTTTSEEE
T ss_pred --HHHHhc-cccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc-cccCHHHHHHHHHHHHHHHhhcCCCEEE
Confidence 000000 000000001112235778777777666667778999999998 7899888777666663 1112235566
Q ss_pred EEecccC
Q 014006 155 ITSATLD 161 (432)
Q Consensus 155 ~~SAT~~ 161 (432)
+.|..++
T Consensus 184 ivtH~~~ 190 (237)
T 2cbz_A 184 LVTHSMS 190 (237)
T ss_dssp EECSCST
T ss_pred EEecChH
Confidence 6665543
No 147
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.29 E-value=0.00056 Score=65.14 Aligned_cols=105 Identities=22% Similarity=0.177 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEEE
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKY 99 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v 99 (432)
.+..++.|+.|||||+.+...+.. ...+++.|+++++.++.+++.+. +. ......-+
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~------~~~lVlTpT~~aa~~l~~kl~~~-----~~------------~~~~~~~V 217 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF------EEDLILVPGRQAAEMIRRRANAS-----GI------------IVATKDNV 217 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT------TTCEEEESCHHHHHHHHHHHTTT-----SC------------CCCCTTTE
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc------CCeEEEeCCHHHHHHHHHHhhhc-----Cc------------cccccceE
Confidence 347789999999999877655421 35688999999998887766221 10 01112335
Q ss_pred cCHHHHHHHHhcCCC--CCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 100 LTDGVLLREILSNPD--LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~--l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
.|-+.++ ++... ..+.+++||||+- +++.+.+..++.. .+. .+++++.
T Consensus 218 ~T~dsfL---~~~~~~~~~~~d~liiDE~s--m~~~~~l~~l~~~----~~~-~~vilvG 267 (446)
T 3vkw_A 218 RTVDSFL---MNYGKGARCQFKRLFIDEGL--MLHTGCVNFLVEM----SLC-DIAYVYG 267 (446)
T ss_dssp EEHHHHH---HTTTSSCCCCCSEEEEETGG--GSCHHHHHHHHHH----TTC-SEEEEEE
T ss_pred EEeHHhh---cCCCCCCCCcCCEEEEeCcc--cCCHHHHHHHHHh----CCC-CEEEEec
Confidence 6666543 22222 2348999999997 7787777664433 222 4566665
No 148
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.26 E-value=0.0011 Score=61.91 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=44.1
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhh
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKF 168 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~ 168 (432)
.+.|+..+..+......+.+++++||.- ..+|......+...+...... +.-+|+.| .+.+.+..+
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~vT--Hd~~~a~~~ 200 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPL-SNLDALLRLEVRAELKRLQKELGITTVYVT--HDQAEALAM 200 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGG-GGSCHHHHHHHHHHHHHHHHHHTCEEEEEE--SCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEC--CCHHHHHHh
Confidence 5677777777666677889999999997 789988877766555554322 34555554 444444444
No 149
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.25 E-value=0.0013 Score=60.14 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=24.8
Q ss_pred HHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
+-.....+..+++.||+|+|||+++..+.....
T Consensus 18 ~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 18 IAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp HHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred HHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 333345677899999999999988877766543
No 150
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.25 E-value=0.00037 Score=72.23 Aligned_cols=66 Identities=23% Similarity=0.356 Sum_probs=52.7
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHH
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ 71 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~ 71 (432)
+...|.+++..+..+...+|.||+|||||+.+..++.......+.+++++.|+...+.++.+++.+
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 567888898888888899999999999996655555544333567899999999999999888753
No 151
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.25 E-value=0.0012 Score=66.27 Aligned_cols=138 Identities=18% Similarity=0.172 Sum_probs=75.9
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCc---cCC---eeeeeeee---
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVR---LGE---EVGYAIRF--- 87 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~---~~~---~~g~~~~~--- 87 (432)
+.+|+.+.++||+||||||++..+........|...+--.+.+.......+ +..+.- ... ++.....+
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r---~~i~~v~Q~~~lf~~tv~eni~~~~~ 442 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR---GHISAVPQETVLFSGTIKENLKWGRE 442 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHH---HHEEEECSSCCCCSEEHHHHHTTTCS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHH---hheEEECCCCcCcCccHHHHHhccCC
Confidence 467899999999999999999888777665544444434444332221111 111100 000 00000000
Q ss_pred ----c---------------ccCCCCc------eEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHH
Q 014006 88 ----E---------------DRTSERT------LIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (432)
Q Consensus 88 ----~---------------~~~~~~~------~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~ 142 (432)
+ .....+. ...-.+.|+-.+..+.+..+.+.+++++||+- ..+|......+.+.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpt-s~LD~~~~~~i~~~ 521 (587)
T 3qf4_A 443 DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCT-SSVDPITEKRILDG 521 (587)
T ss_dssp SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCC-TTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHH
Confidence 0 0000000 01124667666666666667788999999998 78999887776666
Q ss_pred HHhhhcCCcEEEEEecc
Q 014006 143 LVNLRASKLKILITSAT 159 (432)
Q Consensus 143 ~~~~~~~~~~ii~~SAT 159 (432)
+..... +.-+|+.|.-
T Consensus 522 l~~~~~-~~tvi~itH~ 537 (587)
T 3qf4_A 522 LKRYTK-GCTTFIITQK 537 (587)
T ss_dssp HHHHST-TCEEEEEESC
T ss_pred HHHhCC-CCEEEEEecC
Confidence 655433 3555555543
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.25 E-value=0.0023 Score=58.29 Aligned_cols=126 Identities=16% Similarity=0.239 Sum_probs=64.7
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecc-cchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceE
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~-P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 97 (432)
.++.+++.|++|+||||++..++......++...++-. +.+..+.++.+.+.+..+..+ +. . ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~---~~-----~-~s~----- 168 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATV---IS-----H-SEG----- 168 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE---EC-----C-STT-----
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcE---Ee-----c-CCc-----
Confidence 34578899999999998887777666544444444433 444444444444545444322 00 0 001
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhh----c--CCcEEEEEecccC
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLR----A--SKLKILITSATLD 161 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~----~--~~~~ii~~SAT~~ 161 (432)
..|..+....+......+++++|+||+- +....+.+...++.+.... + ...-++.+.|+..
T Consensus 169 --~~~~~v~~~al~~a~~~~~dvvIiDtpg-~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~ 235 (306)
T 1vma_A 169 --ADPAAVAFDAVAHALARNKDVVIIDTAG-RLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG 235 (306)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEEECC-CCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH
T ss_pred --cCHHHHHHHHHHHHHhcCCCEEEEECCC-chhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC
Confidence 1133221111111123467899999997 4444444444455444332 1 1123556677743
No 153
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.24 E-value=0.0031 Score=56.32 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=24.3
Q ss_pred HHHhcCCEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 15 ~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
.....+..+++.||+|+|||+++..+.....
T Consensus 24 ~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 24 HLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp HHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred HHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 3345678899999999999988877766543
No 154
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.23 E-value=0.00064 Score=61.25 Aligned_cols=59 Identities=22% Similarity=0.224 Sum_probs=39.0
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEE--EEEecc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKI--LITSAT 159 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~i--i~~SAT 159 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+++.+......+.-+ |+.|..
T Consensus 162 LSgGqkqRv~lAraL~~~p~lLlLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd 222 (279)
T 2ihy_A 162 LSTGEKQRVMIARALMGQPQVLILDEPA-AGLDFIARESLLSILDSLSDSYPTLAMIYVTHF 222 (279)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCc-cccCHHHHHHHHHHHHHHHHCCCEEEEEEEecC
Confidence 4566666666555567788999999998 7899888777666555443323445 555543
No 155
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.00028 Score=73.20 Aligned_cols=66 Identities=23% Similarity=0.316 Sum_probs=51.9
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHH
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQ 71 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~ 71 (432)
+...|.+++..+..+..++|.||+|||||+.+..++.......+.+++++.|+...+.++.+++.+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 567899999998888899999999999995544444332212456899999999999999998865
No 156
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.21 E-value=0.00029 Score=64.56 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
++++++.||+|+|||+++..+.....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999988777766544
No 157
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.20 E-value=0.0015 Score=60.66 Aligned_cols=39 Identities=8% Similarity=0.109 Sum_probs=27.2
Q ss_pred hhhhHHHHHHH----HhcCC---EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 6 ILQYEETIVET----VEQNP---VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 6 ~~~~q~~i~~~----i~~~~---~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+|+.|++++.. +.+|+ .+++.||.|+|||+++..+....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 35555555444 44554 58999999999998877776544
No 158
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.20 E-value=0.0011 Score=61.80 Aligned_cols=66 Identities=15% Similarity=0.258 Sum_probs=43.7
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhh
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKF 168 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~ 168 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+...+...... +.-+|+.| .+.+.+..+
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~vT--Hd~~~~~~~ 200 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPL-SNLDANLRMIMRAEIKHLQQELGITSVYVT--HDQAEAMTM 200 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCHHHHHHHHHHHHHHHHHHCCEEEEEE--SCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEc--CCHHHHHHh
Confidence 4677777776666677889999999998 789988877766655554322 34455554 444444444
No 159
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.20 E-value=0.00047 Score=65.18 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+..+++.||+|+|||+++..+....
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999998888777654
No 160
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.19 E-value=0.00057 Score=66.35 Aligned_cols=43 Identities=9% Similarity=0.201 Sum_probs=30.8
Q ss_pred HHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEec
Q 014006 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (432)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~ 55 (432)
++-.+..|+.++|.|++|+|||+++..++.......+..+++.
T Consensus 196 ~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~ 238 (454)
T 2r6a_A 196 MTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIF 238 (454)
T ss_dssp HHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred hcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 3344667899999999999999988888776544334344443
No 161
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.18 E-value=0.00014 Score=60.57 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=20.4
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHH
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQ 39 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~ 39 (432)
+.+|+.+.+.||+||||||++..
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 45788999999999999999884
No 162
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.18 E-value=0.00061 Score=63.29 Aligned_cols=66 Identities=21% Similarity=0.253 Sum_probs=45.0
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhh
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKF 168 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~ 168 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+...+...... +.-+|+.|. +.+.+..+
T Consensus 128 LSgGq~QRvalAraL~~~P~lLLLDEP~-s~LD~~~~~~l~~~l~~l~~~~g~tii~vTH--d~~~~~~~ 194 (348)
T 3d31_A 128 LSGGEQQRVALARALVTNPKILLLDEPL-SALDPRTQENAREMLSVLHKKNKLTVLHITH--DQTEARIM 194 (348)
T ss_dssp SCHHHHHHHHHHHHTTSCCSEEEEESSS-TTSCHHHHHHHHHHHHHHHHHTTCEEEEEES--CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC--CHHHHHHh
Confidence 5677777777777778899999999997 789988877766665554322 345555554 44444443
No 163
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.17 E-value=0.00077 Score=58.74 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=25.0
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
.+.+|+.+.+.||+||||||++..++....
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 355788999999999999999988877443
No 164
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.16 E-value=0.00016 Score=72.71 Aligned_cols=140 Identities=21% Similarity=0.260 Sum_probs=76.6
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCcc------CCeeeeeeee---
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRL------GEEVGYAIRF--- 87 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~------~~~~g~~~~~--- 87 (432)
+.+|+.+.++||+||||||++..+........|...+--.+.+....+..+ +..+.-. ..++......
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r---~~i~~v~Q~~~lf~~tv~eni~~~~~ 454 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLR---SSIGIVLQDTILFSTTVKENLKYGNP 454 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHH---HHEEEECTTCCCCSSBHHHHHHSSST
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHH---hceEEEeCCCccccccHHHHHhcCCC
Confidence 467899999999999999999988877665544443333343332211111 1111000 0000000000
Q ss_pred ----c---------------ccCCCCceE------EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHH
Q 014006 88 ----E---------------DRTSERTLI------KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKR 142 (432)
Q Consensus 88 ----~---------------~~~~~~~~i------~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~ 142 (432)
+ .....+.+- .-.+.|+-.+..+.+..+.+.+++++||+- ..+|......+.+.
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpt-s~LD~~~~~~i~~~ 533 (598)
T 3qf4_B 455 GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEAT-SNVDTKTEKSIQAA 533 (598)
T ss_dssp TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCC-TTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc-cCCCHHHHHHHHHH
Confidence 0 000000000 113566666666666667788999999998 78998887776666
Q ss_pred HHhhhcCCcEEEEEecccC
Q 014006 143 LVNLRASKLKILITSATLD 161 (432)
Q Consensus 143 ~~~~~~~~~~ii~~SAT~~ 161 (432)
+..... +.-+|+.|.-++
T Consensus 534 l~~~~~-~~t~i~itH~l~ 551 (598)
T 3qf4_B 534 MWKLME-GKTSIIIAHRLN 551 (598)
T ss_dssp HHHHHT-TSEEEEESCCTT
T ss_pred HHHHcC-CCEEEEEecCHH
Confidence 655543 355565555443
No 165
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.16 E-value=0.00039 Score=62.05 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=39.6
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+..... -+|+.|..
T Consensus 129 LSgGqkqRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~L~~~~~---tviivtHd 184 (263)
T 2pjz_A 129 LSAGQSVLVRTSLALASQPEIVGLDEPF-ENVDAARRHVISRYIKEYGK---EGILVTHE 184 (263)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTT-TTCCHHHHHHHHHHHHHSCS---EEEEEESC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCc-cccCHHHHHHHHHHHHHhcC---cEEEEEcC
Confidence 5677777776666667788999999998 78999888876666654432 44544443
No 166
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=97.16 E-value=0.0012 Score=66.05 Aligned_cols=111 Identities=20% Similarity=0.293 Sum_probs=74.4
Q ss_pred hhHHHHHHHHhc--CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeee
Q 014006 8 QYEETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAI 85 (432)
Q Consensus 8 ~~q~~i~~~i~~--~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~ 85 (432)
.-|.++++.+.+ ....+++|+-|.|||+++-..+..... .++++.|+.+.+..+.+...+
T Consensus 178 ~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~----~~~vtAP~~~a~~~l~~~~~~-------------- 239 (671)
T 2zpa_A 178 PEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAG----RAIVTAPAKASTDVLAQFAGE-------------- 239 (671)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSS----CEEEECSSCCSCHHHHHHHGG--------------
T ss_pred HHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHh----CcEEECCCHHHHHHHHHHhhC--------------
Confidence 457778877765 557899999999999887777665532 358999999988765543211
Q ss_pred eecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccCh
Q 014006 86 RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (432)
Q Consensus 86 ~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~ 162 (432)
.+-|..|..+.. ...+.+++|||||= ++....+.. ++.. ...++||.|+..
T Consensus 240 ----------~i~~~~Pd~~~~------~~~~~dlliVDEAA--aIp~pll~~----ll~~----~~~v~~~tTv~G 290 (671)
T 2zpa_A 240 ----------KFRFIAPDALLA------SDEQADWLVVDEAA--AIPAPLLHQ----LVSR----FPRTLLTTTVQG 290 (671)
T ss_dssp ----------GCCBCCHHHHHH------SCCCCSEEEEETGG--GSCHHHHHH----HHTT----SSEEEEEEEBSS
T ss_pred ----------CeEEeCchhhhh------CcccCCEEEEEchh--cCCHHHHHH----HHhh----CCeEEEEecCCc
Confidence 155567765431 24568999999996 666555444 3332 334777778854
No 167
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.16 E-value=8.4e-05 Score=66.00 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=37.6
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+++.+......+.-+|+.|..+
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 203 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETD-SGLDIDALKVVARGVNAMRGPNFGALVITHYQ 203 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGG-GTTCHHHHHHHHHHHHHHCSTTCEEEEECSSS
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 4566655555554455677899999998 78999887776666655543344566655443
No 168
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.15 E-value=0.0017 Score=59.79 Aligned_cols=126 Identities=17% Similarity=0.283 Sum_probs=67.8
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccc-hhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceE
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-RVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~-~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 97 (432)
++..+.+.||+||||||++..+........+...+.-.++ +..+.++.+.+++..+..+. . ... ..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v---~-----q~~-~~---- 194 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVI---K-----HSY-GA---- 194 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEE---C-----CCT-TC----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEE---e-----ccc-cC----
Confidence 4678999999999999998888877666656555555554 44455555555555543211 0 000 00
Q ss_pred EEcCHHHH-HHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccCh
Q 014006 98 KYLTDGVL-LREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDG 162 (432)
Q Consensus 98 ~v~T~~~l-~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~ 162 (432)
.|... .+.+.. ....+.+++++|.+.....+...... +..+.+.......++.+.|+...
T Consensus 195 ---~p~~~v~e~l~~-~~~~~~d~vliDtaG~~~~~~~l~~e-L~~i~ral~~de~llvLDa~t~~ 255 (328)
T 3e70_C 195 ---DPAAVAYDAIQH-AKARGIDVVLIDTAGRSETNRNLMDE-MKKIARVTKPNLVIFVGDALAGN 255 (328)
T ss_dssp ---CHHHHHHHHHHH-HHHHTCSEEEEEECCSCCTTTCHHHH-HHHHHHHHCCSEEEEEEEGGGTT
T ss_pred ---CHHHHHHHHHHH-HHhccchhhHHhhccchhHHHHHHHH-HHHHHHHhcCCCCEEEEecHHHH
Confidence 12111 111100 00124678899998732233333333 34343333234677788877643
No 169
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.11 E-value=0.0035 Score=58.51 Aligned_cols=43 Identities=19% Similarity=0.460 Sum_probs=28.0
Q ss_pred CCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 115 LSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 115 l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
..+..++|+||+| .++.+....+++.+... +.+..+|+.|..+
T Consensus 132 ~~~~~vlilDE~~--~L~~~~~~~L~~~le~~-~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEAN--SLTKDAQAALRRTMEKY-SKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTT--SSCHHHHHHHHHHHHHS-TTTEEEEEEESCS
T ss_pred CCCCeEEEEeCcc--ccCHHHHHHHHHHHHhh-cCCCEEEEEeCCH
Confidence 4478899999999 37777776655555443 3346666666543
No 170
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.10 E-value=0.00057 Score=58.35 Aligned_cols=41 Identities=24% Similarity=0.152 Sum_probs=29.3
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchh
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV 60 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~ 60 (432)
.|...++.|+-||||||.+...+.... ..+.+++++.|.+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~-~~g~kVli~k~~~d 67 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQ-FAKQHAIVFKPCID 67 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEECC--
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEeccC
Confidence 466778999999999977776666553 34567888888754
No 171
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.10 E-value=0.0007 Score=64.06 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
...+++.||+|+|||+++..+....
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999998887776543
No 172
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.10 E-value=0.00017 Score=64.39 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=38.8
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+..... +.-+|+.|..
T Consensus 156 LSgGqkqRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~i~~~l~~l~~-~~tviivtH~ 213 (260)
T 2ghi_A 156 LSGGERQRIAIARCLLKDPKIVIFDEAT-SSLDSKTEYLFQKAVEDLRK-NRTLIIIAHR 213 (260)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCC-CTTCHHHHHHHHHHHHHHTT-TSEEEEECSS
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHhcC-CCEEEEEcCC
Confidence 5666666665555556678899999998 78998887776665555433 3445555543
No 173
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.09 E-value=0.00017 Score=72.32 Aligned_cols=59 Identities=25% Similarity=0.314 Sum_probs=40.5
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..... +.-+|+.|.-+
T Consensus 481 LSgGq~qrl~iAral~~~p~illlDEpt-s~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~ 539 (582)
T 3b60_A 481 LSGGQRQRIAIARALLRDSPILILDEAT-SALDTESERAIQAALDELQK-NRTSLVIAHRL 539 (582)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEETTT-SSCCHHHHHHHHHHHHHHHT-TSEEEEECSCG
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECcc-ccCCHHHHHHHHHHHHHHhC-CCEEEEEeccH
Confidence 4666666666555556778899999998 78999887776666655443 35566655543
No 174
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.08 E-value=0.0013 Score=57.86 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=44.0
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+.+.+...... +.-+|+.|. +.+.+..+.
T Consensus 127 LSgGqkqRv~lAral~~~p~lllLDEPt-s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtH--d~~~~~~~~ 194 (240)
T 2onk_A 127 LSGGERQRVALARALVIQPRLLLLDEPL-SAVDLKTKGVLMEELRFVQREFDVPILHVTH--DLIEAAMLA 194 (240)
T ss_dssp SCHHHHHHHHHHHHHTTCCSSBEEESTT-SSCCHHHHHHHHHHHHHHHHHHTCCEEEEES--CHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC--CHHHHHHhC
Confidence 5677777766666667888999999998 789988877766665554321 344555554 444444443
No 175
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.08 E-value=0.001 Score=62.30 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=27.4
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKS 49 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~ 49 (432)
+.+|+.+.+.||+||||||++..+........|
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 66 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 66 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCce
Confidence 467899999999999999999988887654433
No 176
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.08 E-value=0.00063 Score=57.15 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=27.8
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~ 58 (432)
.++..++.||.|||||+.+...+..... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~-~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQI-AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEccc
Confidence 4778899999999999666555554433 24567777665
No 177
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.07 E-value=0.0019 Score=60.57 Aligned_cols=66 Identities=17% Similarity=0.253 Sum_probs=43.2
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhh
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKF 168 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~ 168 (432)
.+.|+..+..+......+.+++++||.- ..+|......+...+...... +.-+|+.|. +.+.+..+
T Consensus 140 LSGGq~QRvalArAL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH--d~~~a~~~ 206 (372)
T 1g29_1 140 LSGGQRQRVALGRAIVRKPQVFLMDEPL-SNLDAKLRVRMRAELKKLQRQLGVTTIYVTH--DQVEAMTM 206 (372)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTT-TTSCHHHHHHHHHHHHHHHHHHTCEEEEEES--CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCC-ccCCHHHHHHHHHHHHHHHHhcCCEEEEECC--CHHHHHHh
Confidence 4677766666666667788999999998 789988877766555544322 345565554 44444444
No 178
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.07 E-value=0.0014 Score=58.73 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=40.7
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+++.+......+.-+|+.|..
T Consensus 165 LSgGq~QRv~iAraL~~~p~lLlLDEPt-s~LD~~~~~~l~~~l~~l~~~g~tviivtHd 223 (267)
T 2zu0_C 165 FSGGEKKRNDILQMAVLEPELCILDESD-SGLDIDALKVVADGVNSLRDGKRSFIIVTHY 223 (267)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTT-TTCCHHHHHHHHHHHHTTCCSSCEEEEECSS
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEeeC
Confidence 5677766666655566678899999998 7899988888666665554333445555443
No 179
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.06 E-value=0.0014 Score=57.49 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=24.0
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhh
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~ 43 (432)
.+..|+.+++.||+|+|||+++..++..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3557899999999999999998888774
No 180
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.05 E-value=0.0015 Score=58.99 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=24.2
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+..|+.++|.||+||||||++..++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45688999999999999998888777644
No 181
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.04 E-value=0.0047 Score=59.58 Aligned_cols=25 Identities=24% Similarity=0.285 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+.+++.||+|+|||+++..+....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999998887776544
No 182
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.00 E-value=0.0094 Score=54.83 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=22.2
Q ss_pred HHHHHhcCC---EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 13 IVETVEQNP---VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 13 i~~~i~~~~---~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+.+.+..++ .+++.||+|+|||+++..+....
T Consensus 38 l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 38 FKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp HHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 444455444 56777889999998888776554
No 183
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.99 E-value=0.0045 Score=58.12 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=24.4
Q ss_pred HHHHHHhcCC---EEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 12 TIVETVEQNP---VVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 12 ~i~~~i~~~~---~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
.+...+..++ .+++.||+|+|||+++..+.....
T Consensus 27 ~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 27 ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp HHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444455554 589999999999988877766543
No 184
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.98 E-value=0.0058 Score=55.45 Aligned_cols=126 Identities=17% Similarity=0.199 Sum_probs=62.8
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecc-cchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceE
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQ-PRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~-P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 97 (432)
.++.+.+.|++|+||||++..+.......++...++-. +.+..+..+...+.+..+..+ .. ... .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~---~~-----~~~-~----- 162 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV---LE-----VMD-G----- 162 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE---EE-----CCT-T-----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEE---EE-----cCC-C-----
Confidence 35678888999999998877777665544444444433 344444333333333333221 00 000 0
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccC
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~ 161 (432)
..|..+.+..+......++++|||||+-....+......+.+......+. .-++.+.|+..
T Consensus 163 --~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~-~~~lv~~~~~~ 223 (295)
T 1ls1_A 163 --ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPD-EVLLVLDAMTG 223 (295)
T ss_dssp --CCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCS-EEEEEEEGGGT
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCC-EEEEEEeCCCc
Confidence 13444433222221124689999999942345554444433322222333 33445666643
No 185
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.98 E-value=0.0019 Score=55.72 Aligned_cols=41 Identities=24% Similarity=0.221 Sum_probs=30.3
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchh
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV 60 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~ 60 (432)
.|...++.|+-||||||.+...+.... ..+.+++++.|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~-~~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ-IAQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH-TTTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEeecCC
Confidence 577889999999999977666665543 44667787777654
No 186
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.97 E-value=0.0015 Score=63.11 Aligned_cols=62 Identities=13% Similarity=0.237 Sum_probs=38.2
Q ss_pred HHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHH-HHHhCC
Q 014006 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV-AQELGV 75 (432)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~-~~~~~~ 75 (432)
++--+..|+.++|.|++|+|||+++..++.......+..+++... -.-..++..++ +...+.
T Consensus 193 ~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl-E~~~~~l~~R~~~~~~~i 255 (444)
T 2q6t_A 193 LIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL-EMPAAQLTLRMMCSEARI 255 (444)
T ss_dssp HHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES-SSCHHHHHHHHHHHHTTC
T ss_pred hcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC-CCCHHHHHHHHHHHHcCC
Confidence 333456788999999999999988887777654433444555432 12234555554 334443
No 187
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.97 E-value=0.00076 Score=61.07 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=41.1
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
-.+.|+..+..+....+.+.+++++||.- ..+|......+++.++.....+.-+|+.|..
T Consensus 159 ~LSgGq~QRv~lAraL~~~p~lllLDEPt-s~LD~~~~~~i~~~ll~~~~~~~tviivtHd 218 (290)
T 2bbs_A 159 TLSGGQRARISLARAVYKDADLYLLDSPF-GYLDVLTEKEIFESCVCKLMANKTRILVTSK 218 (290)
T ss_dssp CCCHHHHHHHHHHHHHHSCCSEEEEESTT-TTCCHHHHHHHHHHCCCCCTTTSEEEEECCC
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEECCc-ccCCHHHHHHHHHHHHHHhhCCCEEEEEecC
Confidence 36788887777766677888999999998 7899888777666543222223445554443
No 188
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.95 E-value=0.00017 Score=72.26 Aligned_cols=57 Identities=25% Similarity=0.220 Sum_probs=36.3
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SA 158 (432)
.+.|+-.+..+.+..+.+.+++++||+- ..+|......+.+.+..... +.-+|+.|.
T Consensus 478 LSgGq~Qrv~lAral~~~p~illlDEpt-s~LD~~~~~~i~~~l~~~~~-~~t~i~itH 534 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPPILILDEAT-SALDLESESIIQEALDVLSK-DRTTLIVAH 534 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTT-TTCCHHHHHHHHHHHHHHTT-TSEEEEECS
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcc-ccCCHHHHHHHHHHHHHHcC-CCEEEEEec
Confidence 3566666555555556678899999998 78888876665555544433 344555443
No 189
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.0018 Score=64.81 Aligned_cols=66 Identities=18% Similarity=0.181 Sum_probs=42.2
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhh
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~ 168 (432)
.+.|...+..+......+.+++++||.- ..+|......+.+.+......+.-+|+.| .+.+.+..+
T Consensus 222 LSgGe~Qrv~iAraL~~~p~llllDEPt-s~LD~~~~~~l~~~l~~l~~~g~tvi~vt--Hdl~~~~~~ 287 (608)
T 3j16_B 222 LSGGELQRFAIGMSCVQEADVYMFDEPS-SYLDVKQRLNAAQIIRSLLAPTKYVICVE--HDLSVLDYL 287 (608)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEECTT-TTCCHHHHHHHHHHHHGGGTTTCEEEEEC--SCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECcc-cCCCHHHHHHHHHHHHHHHhCCCEEEEEe--CCHHHHHHh
Confidence 4566666555555556778899999998 68888887776666655544444555554 444444443
No 190
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.93 E-value=0.0003 Score=77.19 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=75.7
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCC---ccCCeee-------eee-
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV---RLGEEVG-------YAI- 85 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~---~~~~~~g-------~~~- 85 (432)
+..|+.+.|+|+|||||||++..+........|...+--.+.+.+..+..++ ..+. ......| ++.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~---~i~~V~Qdp~LF~gTIreNI~~gld 1178 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS---QIAIVSQEPTLFDCSIAENIIYGLD 1178 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHT---TEEEECSSCCCCSEEHHHHHSSSSC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHh---heEEECCCCEeeCccHHHHHhccCC
Confidence 5689999999999999999998887776665554444344444333222211 0000 0000000 000
Q ss_pred ----ee---------------cccCCCCceEEE------cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHH
Q 014006 86 ----RF---------------EDRTSERTLIKY------LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLV 140 (432)
Q Consensus 86 ----~~---------------~~~~~~~~~i~v------~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l 140 (432)
.. -.....+.+-.+ .+.|+-.+..+.+..+.+.+++|+|||- ..+|...-..+.
T Consensus 1179 ~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaT-SaLD~~tE~~Iq 1257 (1321)
T 4f4c_A 1179 PSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT-SALDTESEKVVQ 1257 (1321)
T ss_dssp TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCC-CSTTSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCcc-ccCCHHHHHHHH
Confidence 00 000001111112 3566666555555566778899999998 678877766655
Q ss_pred HHHHhhhcCCcEEEEEeccc
Q 014006 141 KRLVNLRASKLKILITSATL 160 (432)
Q Consensus 141 ~~~~~~~~~~~~ii~~SAT~ 160 (432)
+.+....+ +.-+|..+.-+
T Consensus 1258 ~~l~~~~~-~~TvI~IAHRL 1276 (1321)
T 4f4c_A 1258 EALDRARE-GRTCIVIAHRL 1276 (1321)
T ss_dssp HHHTTTSS-SSEEEEECSSS
T ss_pred HHHHHHcC-CCEEEEeccCH
Confidence 55555444 35566666544
No 191
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.93 E-value=0.0015 Score=60.90 Aligned_cols=35 Identities=17% Similarity=0.404 Sum_probs=26.1
Q ss_pred HHHHHHHHhcC--CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 10 EETIVETVEQN--PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 10 q~~i~~~i~~~--~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+.+...+..+ .++++.||+|+|||+++..+....
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34556666666 569999999999998887766543
No 192
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.92 E-value=0.00023 Score=71.68 Aligned_cols=58 Identities=21% Similarity=0.250 Sum_probs=39.7
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
.+.|+..+..+....+.+.+++++||+- ..+|......+.+.+..... +.-+|+.|.-
T Consensus 484 LSgGq~qrv~iAral~~~p~illlDEpt-s~LD~~~~~~i~~~l~~~~~-~~tvi~itH~ 541 (595)
T 2yl4_A 484 LSGGQKQRIAIARALLKNPKILLLDEAT-SALDAENEYLVQEALDRLMD-GRTVLVIAHR 541 (595)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCC-SSCCHHHHHHHHHHHHHHHT-TSEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcc-cCCCHHHHHHHHHHHHHHhc-CCEEEEEecC
Confidence 5677766666655566778899999998 78999887776666655443 3445554443
No 193
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.91 E-value=0.0012 Score=65.28 Aligned_cols=146 Identities=12% Similarity=0.123 Sum_probs=79.5
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcE------EEecccc------hhhhHHHHHHHHHHhCCcc--CCe-e
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGI------IGVTQPR------RVAAVSVARRVAQELGVRL--GEE-V 81 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~------vl~~~P~------~~l~~q~~~~~~~~~~~~~--~~~-~ 81 (432)
+.+|+.+.+.||+||||||++..+........|.. +-++ |. ...+.+... ....... ... .
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~-~q~~~~~~~~tv~~~l~---~~~~~~~~~~~~~~ 366 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYK-PQRIFPNYDGTVQQYLE---NASKDALSTSSWFF 366 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEE-CSSCCCCCSSBHHHHHH---HHCSSTTCTTSHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEee-chhcccccCCCHHHHHH---HhhhhccchhHHHH
Confidence 45789999999999999999998888765544432 1111 11 111222211 1100000 000 0
Q ss_pred eee-eeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecc
Q 014006 82 GYA-IRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSAT 159 (432)
Q Consensus 82 g~~-~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~-~~~~ii~~SAT 159 (432)
... ....-....+..+--.+-|...+..+......+.+++++||.- ..+|......+.+.+..... .+.-+|+.|.
T Consensus 367 ~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT-~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsH- 444 (538)
T 3ozx_A 367 EEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS-SYLDVEERYIVAKAIKRVTRERKAVTFIIDH- 444 (538)
T ss_dssp HHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHHTTCEEEEECS-
T ss_pred HHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-
Confidence 000 0000000111222235788877777766677888999999998 78999887776666655432 2344555554
Q ss_pred cChHHHHhhc
Q 014006 160 LDGEKVSKFF 169 (432)
Q Consensus 160 ~~~~~~~~~~ 169 (432)
+.+.+..+.
T Consensus 445 -dl~~~~~~a 453 (538)
T 3ozx_A 445 -DLSIHDYIA 453 (538)
T ss_dssp -CHHHHHHHC
T ss_pred -CHHHHHHhC
Confidence 444444443
No 194
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.90 E-value=0.0017 Score=60.46 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=43.5
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcC-CcEEEEEecccChHHHHhhc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRAS-KLKILITSATLDGEKVSKFF 169 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~-~~~ii~~SAT~~~~~~~~~~ 169 (432)
.+.|+..+..+....+.+.+++++||.- ..+|......+...+...... +.-+|+.| .+.+.+..+.
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~-s~LD~~~r~~l~~~l~~l~~~~g~tvi~vT--Hd~~~~~~~a 208 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPF-SNLDARMRDSARALVKEVQSRLGVTLLVVS--HDPADIFAIA 208 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCGGGHHHHHHHHHHHHHHHCCEEEEEE--SCHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEe--CCHHHHHHhC
Confidence 4677777777666677889999999987 678888766655555544322 34555554 4444444443
No 195
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.88 E-value=0.003 Score=62.51 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=41.5
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhh
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~ 168 (432)
.+.|...+..+......+.+++++||.- ..+|......+++.+......+.-+|+.|. +.+.+..+
T Consensus 159 LSgGekQRv~iAraL~~~P~lLlLDEPT-s~LD~~~~~~l~~~L~~l~~~g~tvi~vsH--d~~~~~~~ 224 (538)
T 1yqt_A 159 LSGGELQRVAIAAALLRNATFYFFDEPS-SYLDIRQRLNAARAIRRLSEEGKSVLVVEH--DLAVLDYL 224 (538)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECS--CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEeC--CHHHHHHh
Confidence 4566666666555556788999999987 678888766555555444333455666655 44444444
No 196
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.86 E-value=0.0086 Score=57.81 Aligned_cols=39 Identities=15% Similarity=0.327 Sum_probs=28.6
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEeccc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P 57 (432)
.|..+.+.|++||||||++..+........+...+.-..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D 330 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 330 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCc
Confidence 466899999999999999888877665554444444333
No 197
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.85 E-value=0.0047 Score=56.78 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=23.5
Q ss_pred HHHHHHhcCC--EEEEEcCCCCCHHHHHHHHHhh
Q 014006 12 TIVETVEQNP--VVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 12 ~i~~~i~~~~--~~ii~apTGsGKT~~~~~~~~~ 43 (432)
.+...+..++ .+++.||+|+|||+++..+...
T Consensus 36 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 36 RLKHYVKTGSMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp HHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3444455554 7999999999999887776654
No 198
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.85 E-value=0.0032 Score=58.08 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+.+++.||+|+|||+++..+....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4679999999999998888776654
No 199
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.81 E-value=0.0028 Score=58.46 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+.+++.||+|+|||+++..+....
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 4689999999999998888777654
No 200
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.79 E-value=0.0021 Score=63.66 Aligned_cols=144 Identities=18% Similarity=0.218 Sum_probs=81.0
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCc-----EE-Eecccc----hhhhHHHHHHH-HHHhCC-----ccCCe
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-----II-GVTQPR----RVAAVSVARRV-AQELGV-----RLGEE 80 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~-----~v-l~~~P~----~~l~~q~~~~~-~~~~~~-----~~~~~ 80 (432)
+..|+.+.|.||+||||||++..+........|. .+ ++-+.. ...+.+..... ...... ..-..
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~ 388 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKP 388 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 3578999999999999999999998876544332 12 222211 11122222211 011100 00001
Q ss_pred eeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecc
Q 014006 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSAT 159 (432)
Q Consensus 81 ~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~-~~~~ii~~SAT 159 (432)
.|. .. .....+--.+.|...+..+......+.+++++||.- ..+|......+.+.+..... .+.-+|+.|.
T Consensus 389 ~~l----~~--~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt-~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsH- 460 (538)
T 1yqt_A 389 LGI----ID--LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS-AYLDVEQRLAVSRAIRHLMEKNEKTALVVEH- 460 (538)
T ss_dssp TTC----GG--GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT-TTCCHHHHHHHHHHHHHHHHHHTCEEEEECS-
T ss_pred cCC----hh--hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-
Confidence 110 00 011222335788777777766677889999999998 78999887776666655432 2345666554
Q ss_pred cChHHHHhhc
Q 014006 160 LDGEKVSKFF 169 (432)
Q Consensus 160 ~~~~~~~~~~ 169 (432)
+.+.+..+.
T Consensus 461 -d~~~~~~~~ 469 (538)
T 1yqt_A 461 -DVLMIDYVS 469 (538)
T ss_dssp -CHHHHHHHC
T ss_pred -CHHHHHHhC
Confidence 444455444
No 201
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.79 E-value=0.0048 Score=59.02 Aligned_cols=58 Identities=16% Similarity=0.298 Sum_probs=40.9
Q ss_pred cCHHHHHHHHhcCCCCCCC--cEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecc
Q 014006 100 LTDGVLLREILSNPDLSPY--SVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSAT 159 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~--~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT 159 (432)
++.|...+..+....+.+. .++|+||.. ..+|......+.+.+.... .+.++|+.|..
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt-~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~ 355 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVD-AGIGGAAAIAVAEQLSRLA-DTRQVLVVTHL 355 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTT-TTCCHHHHHHHHHHHHHHT-TTSEEEEECSC
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHh-CCCEEEEEeCc
Confidence 5778766555433333334 899999998 7899988887766666654 35888888765
No 202
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.79 E-value=0.0087 Score=49.84 Aligned_cols=23 Identities=35% Similarity=0.689 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+.+.||+||||||++..++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999998887665
No 203
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.77 E-value=0.0064 Score=59.96 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+.+++.||+|+|||+++..+....
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999999888777665
No 204
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.77 E-value=0.0013 Score=72.23 Aligned_cols=131 Identities=19% Similarity=0.195 Sum_probs=72.8
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHH----------------------------
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARR---------------------------- 68 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~---------------------------- 68 (432)
+.+|+.+.|+||+||||||++..++.......|...+--.|.+.+-.+..+.
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~ 520 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGIT 520 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccch
Confidence 4679999999999999999999888877655544333333333322221111
Q ss_pred ------HHHHhCCccCCeeeeeeeecccCCCCceE------EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHH
Q 014006 69 ------VAQELGVRLGEEVGYAIRFEDRTSERTLI------KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDIL 136 (432)
Q Consensus 69 ------~~~~~~~~~~~~~g~~~~~~~~~~~~~~i------~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~ 136 (432)
.++..+.. .+-.....+.+- .-.+.|+-.+..+.+..+.+.+++|+||+- ..+|...-
T Consensus 521 ~~~v~~a~~~a~l~---------~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~t-SaLD~~te 590 (1321)
T 4f4c_A 521 REEMVAACKMANAE---------KFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT-SALDAESE 590 (1321)
T ss_dssp HHHHHHHHHHTTCH---------HHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTT-TTSCTTTH
T ss_pred HHHHHHHHHHccch---------hHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEeccc-ccCCHHHH
Confidence 11110000 000000011111 124678877777777778889999999997 67777654
Q ss_pred HHHHHHHHhhhcCCcEEEEEec
Q 014006 137 LGLVKRLVNLRASKLKILITSA 158 (432)
Q Consensus 137 ~~~l~~~~~~~~~~~~ii~~SA 158 (432)
..+.+.+..... +.-+|+.+.
T Consensus 591 ~~i~~~l~~~~~-~~T~iiiaH 611 (1321)
T 4f4c_A 591 GIVQQALDKAAK-GRTTIIIAH 611 (1321)
T ss_dssp HHHHHHHHHHHT-TSEEEEECS
T ss_pred HHHHHHHHHHhC-CCEEEEEcc
Confidence 443344433333 244444443
No 205
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.75 E-value=0.0021 Score=61.32 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=20.4
Q ss_pred cCCEEEE--EcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVV--IGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii--~apTGsGKT~~~~~~~~~~ 44 (432)
.+..++| .||+|+|||+++..+....
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 3457888 8999999998887776544
No 206
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.75 E-value=0.0017 Score=59.93 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=36.9
Q ss_pred HHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHH
Q 014006 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV 69 (432)
Q Consensus 12 ~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~ 69 (432)
+++--+..|+.++|.|++|+|||+++..++..... .+..+++... -.-..|+..++
T Consensus 38 ~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSl-Ems~~ql~~Rl 93 (338)
T 4a1f_A 38 NYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSL-EMSAEQLALRA 93 (338)
T ss_dssp HHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEES-SSCHHHHHHHH
T ss_pred HHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeC-CCCHHHHHHHH
Confidence 34445678899999999999999888877766544 3455555432 22334555554
No 207
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.74 E-value=0.0057 Score=61.29 Aligned_cols=144 Identities=17% Similarity=0.206 Sum_probs=80.1
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCc-----EE-Eecccc----hhhhHHHHHHH-HHHhCC-----ccCCe
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-----II-GVTQPR----RVAAVSVARRV-AQELGV-----RLGEE 80 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~-----~v-l~~~P~----~~l~~q~~~~~-~~~~~~-----~~~~~ 80 (432)
+.+|+.+.|.||+||||||++..+........|. .+ ++-+.. ...+.+..... ...... ..-..
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 458 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP 458 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 4579999999999999999999998876544332 12 222211 11122222111 000000 00000
Q ss_pred eeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecc
Q 014006 81 VGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSAT 159 (432)
Q Consensus 81 ~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~-~~~~ii~~SAT 159 (432)
.| .. ......+--.+.|...+..+......+.+++++||.- ..+|......+.+.+..... .+.-+|+.|.
T Consensus 459 ~~----l~--~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt-~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsH- 530 (607)
T 3bk7_A 459 LG----II--DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS-AYLDVEQRLAVSRAIRHLMEKNEKTALVVEH- 530 (607)
T ss_dssp HT----CT--TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT-TTCCHHHHHHHHHHHHHHHHHTTCEEEEECS-
T ss_pred cC----Cc--hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-
Confidence 01 00 0111222336788888777776677889999999998 78999887776666655432 2345555554
Q ss_pred cChHHHHhhc
Q 014006 160 LDGEKVSKFF 169 (432)
Q Consensus 160 ~~~~~~~~~~ 169 (432)
+.+.+..+.
T Consensus 531 -d~~~~~~~a 539 (607)
T 3bk7_A 531 -DVLMIDYVS 539 (607)
T ss_dssp -CHHHHHHHC
T ss_pred -CHHHHHHhC
Confidence 444444444
No 208
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.74 E-value=0.0082 Score=55.70 Aligned_cols=32 Identities=16% Similarity=0.434 Sum_probs=24.7
Q ss_pred HHHHHhcCCE--EEEEcCCCCCHHHHHHHHHhhc
Q 014006 13 IVETVEQNPV--VVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 13 i~~~i~~~~~--~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+-..+..|+. +++.||+|+|||+++..+....
T Consensus 37 L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 37 VRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3445566765 8999999999998888776654
No 209
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.73 E-value=0.0065 Score=55.43 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+.++++.||+|+|||+++..+....
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999998876655443
No 210
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.73 E-value=0.0019 Score=60.30 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=24.1
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+..|+.+.|.||+|||||+++..++...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4577899999999999999988887765
No 211
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.73 E-value=0.0022 Score=57.89 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=22.4
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+..+++.||+|+|||+++..+....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456789999999999998888776654
No 212
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.71 E-value=0.026 Score=56.75 Aligned_cols=38 Identities=29% Similarity=0.325 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCC
Q 014006 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTK 48 (432)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~ 48 (432)
+.+-..+..++.+++.||+|+|||+++..+........
T Consensus 51 ~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred hhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 44556678899999999999999999988887665443
No 213
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.71 E-value=0.0088 Score=55.39 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+++.||+|+|||+++..+....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 578999999999998888776553
No 214
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.70 E-value=0.012 Score=54.04 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
...+++.||+|+|||+++..+....
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999998887776544
No 215
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.70 E-value=0.0016 Score=55.49 Aligned_cols=42 Identities=24% Similarity=0.161 Sum_probs=27.9
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchh
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV 60 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~ 60 (432)
..|...++.||-||||||.+...+.... ..+.+++++.|...
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~-~~g~kvli~kp~~D 67 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGI-YAKQKVVVFKPAID 67 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH-HcCCceEEEEeccC
Confidence 4578889999999999975544444433 23457788877653
No 216
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.015 Score=58.18 Aligned_cols=144 Identities=14% Similarity=0.120 Sum_probs=76.9
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCc-----EEEec-ccc----hhhhHHHHHHHHHHhCCccCCe--ee-eee
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-----IIGVT-QPR----RVAAVSVARRVAQELGVRLGEE--VG-YAI 85 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~-----~vl~~-~P~----~~l~~q~~~~~~~~~~~~~~~~--~g-~~~ 85 (432)
.|+.+.+.||+||||||++..+........|. .+.++ +.. ...+.+.. ........... .. .-.
T Consensus 377 ~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~---~~~~~~~~~~~~~~~~~l~ 453 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLF---FKKIRGQFLNPQFQTDVVK 453 (608)
T ss_dssp TTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHH---HHHCSSTTTSHHHHHHTHH
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHH---HHHhhcccccHHHHHHHHH
Confidence 34779999999999999999998877654442 12111 110 00111211 11100000000 00 000
Q ss_pred eecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc-CCcEEEEEecccChHH
Q 014006 86 RFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA-SKLKILITSATLDGEK 164 (432)
Q Consensus 86 ~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~-~~~~ii~~SAT~~~~~ 164 (432)
...-....+..+--.+-|...+..+......+.+++++||.- ..+|......+.+.+..... .+.-+|+.|. +.+.
T Consensus 454 ~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT-~gLD~~~~~~i~~ll~~l~~~~g~tviivtH--dl~~ 530 (608)
T 3j16_B 454 PLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS-AYLDSEQRIICSKVIRRFILHNKKTAFIVEH--DFIM 530 (608)
T ss_dssp HHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT-TTCCHHHHHHHHHHHHHHHHHHTCEEEEECS--CHHH
T ss_pred HcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC--CHHH
Confidence 000000111223336788888888777788899999999998 78998877665555544321 2345555554 4444
Q ss_pred HHhh
Q 014006 165 VSKF 168 (432)
Q Consensus 165 ~~~~ 168 (432)
+..+
T Consensus 531 ~~~~ 534 (608)
T 3j16_B 531 ATYL 534 (608)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4444
No 217
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.67 E-value=0.0055 Score=58.08 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
...+++.||+|+|||+++..+....
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh
Confidence 5789999999999998888776553
No 218
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.65 E-value=0.0075 Score=55.04 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcCC
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHGY 46 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~~ 46 (432)
..+++.||+|+|||+++..+......
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 47999999999999888877766543
No 219
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.65 E-value=0.0083 Score=53.68 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
...+++.||+|+|||+++..+....
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3578999999999998887776653
No 220
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.64 E-value=0.00096 Score=57.26 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCC
Q 014006 7 LQYEETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKS 49 (432)
Q Consensus 7 ~~~q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~ 49 (432)
.--+..+++.+.+|+.+.+.||+||||||++..+... ....|
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G 50 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK 50 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTT
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCC
Confidence 3345678888999999999999999999999888876 44333
No 221
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.61 E-value=0.0034 Score=58.74 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+.+++.||+|+|||+++..+....
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4568999999999998888777655
No 222
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.60 E-value=0.0047 Score=61.92 Aligned_cols=66 Identities=18% Similarity=0.214 Sum_probs=42.6
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhh
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~ 168 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+.+.+......+.-+|+.|. +.+.+..+
T Consensus 229 LSGGekQRvaIAraL~~~P~lLlLDEPT-s~LD~~~~~~l~~~L~~l~~~g~tvIivsH--dl~~~~~~ 294 (607)
T 3bk7_A 229 LSGGELQRVAIAAALLRKAHFYFFDEPS-SYLDIRQRLKVARVIRRLANEGKAVLVVEH--DLAVLDYL 294 (607)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEECTT-TTCCHHHHHHHHHHHHHHHHTTCEEEEECS--CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEec--ChHHHHhh
Confidence 4667666666665567788999999987 678888766655555444333455666655 44434443
No 223
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.60 E-value=0.00094 Score=59.54 Aligned_cols=41 Identities=32% Similarity=0.486 Sum_probs=30.5
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCC-CCcEEEeccc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYT-KSGIIGVTQP 57 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~-~~~~vl~~~P 57 (432)
+.+|+.++++|||||||||++..++...... .+...+.-.|
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 6788999999999999999998888766544 3433343334
No 224
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.60 E-value=0.0099 Score=55.06 Aligned_cols=34 Identities=26% Similarity=0.505 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+++.+.+..++.++|.||.|+|||+++..+....
T Consensus 22 ~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 22 RKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 3455556667899999999999999988877654
No 225
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.60 E-value=0.011 Score=53.66 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=21.8
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.++.+++.||+|+|||+++..+....
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 36789999999999999888776654
No 226
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.58 E-value=0.0011 Score=62.56 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=38.2
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEec
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSA 158 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SA 158 (432)
.+.|+-.+..+....+.+.+++++||.- ..+|......+.+.+.... .+.-+|+.|.
T Consensus 156 LSGGqrQRvalARAL~~~P~lLLLDEPt-s~LD~~~~~~l~~~l~~~~-~~~tvi~vtH 212 (390)
T 3gd7_A 156 LSHGHKQLMCLARSVLSKAKILLLDEPS-AHLDPVTYQIIRRTLKQAF-ADCTVILCEA 212 (390)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESHH-HHSCHHHHHHHHHHHHTTT-TTSCEEEECS
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHh-CCCEEEEEEc
Confidence 4677666666666566788999999987 6788887777666555443 2344555544
No 227
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.57 E-value=0.0021 Score=65.36 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=50.4
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcC--CCCCcEEEecccchhhhHHHHHHHHHHhCC
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG--YTKSGIIGVTQPRRVAAVSVARRVAQELGV 75 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~--~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~ 75 (432)
.+.+.|.+++. ..+..++|.|+.||||| +++..+..... .....+++++.+++..+.++.+++.+..+.
T Consensus 9 ~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 9 SLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp TCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 35677888887 34667889999999999 44444443332 223458999999999999999999877653
No 228
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.56 E-value=0.0022 Score=63.34 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=39.6
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.+.|...+..+......+.+++++||.- ..+|......+.+.+..... +.-+|+.|.-+
T Consensus 139 LSgGe~Qrv~iA~aL~~~p~illlDEPt-s~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl 197 (538)
T 3ozx_A 139 LSGGGLQRLLVAASLLREADVYIFDQPS-SYLDVRERMNMAKAIRELLK-NKYVIVVDHDL 197 (538)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTT-TTCCHHHHHHHHHHHHHHCT-TSEEEEECSCH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh
Confidence 4666666666555566788999999987 67888876665555544433 45566666544
No 229
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.53 E-value=0.0028 Score=60.39 Aligned_cols=40 Identities=35% Similarity=0.522 Sum_probs=29.6
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEeccc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P 57 (432)
.++..++|.|||||||||++..++.......+..+..-.|
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 3567899999999999999998888776554444444334
No 230
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.52 E-value=0.0028 Score=59.43 Aligned_cols=36 Identities=33% Similarity=0.595 Sum_probs=29.5
Q ss_pred HHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCC
Q 014006 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTK 48 (432)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~ 48 (432)
+--.+..|+.++++|||||||||++..++.......
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~ 203 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQ 203 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTS
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCc
Confidence 334577999999999999999999998888765543
No 231
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.49 E-value=0.0051 Score=59.30 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=24.4
Q ss_pred HHHHHhcCC--EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 13 IVETVEQNP--VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 13 i~~~i~~~~--~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+...+..++ .+++.||+|+|||+++..+....
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 334555555 69999999999999888777654
No 232
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.48 E-value=0.02 Score=52.09 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=30.1
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEe
Q 014006 105 LLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITS 157 (432)
Q Consensus 105 l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~S 157 (432)
+...+...+...+.+++||||+| .+..+-...+++.+ ...+.+..+|+.+
T Consensus 70 li~~~~~~p~~~~~kvviIdead--~lt~~a~naLLk~L-Eep~~~t~fIl~t 119 (305)
T 2gno_A 70 IKDFLNYSPELYTRKYVIVHDCE--RMTQQAANAFLKAL-EEPPEYAVIVLNT 119 (305)
T ss_dssp HHHHHTSCCSSSSSEEEEETTGG--GBCHHHHHHTHHHH-HSCCTTEEEEEEE
T ss_pred HHHHHhhccccCCceEEEeccHH--HhCHHHHHHHHHHH-hCCCCCeEEEEEE
Confidence 33334444556778999999999 45555555555444 3334445555554
No 233
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.46 E-value=0.0031 Score=61.84 Aligned_cols=35 Identities=31% Similarity=0.391 Sum_probs=28.4
Q ss_pred HHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCC
Q 014006 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYT 47 (432)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~ 47 (432)
+.-.+..|.+++++|||||||||++..++......
T Consensus 253 l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 253 LWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp HHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 34456789999999999999999998887766443
No 234
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.42 E-value=0.0061 Score=57.70 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHh
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILH 42 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~ 42 (432)
+..|+.+.|.||+|||||+++..++.
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 34688999999999999998886653
No 235
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.40 E-value=0.019 Score=51.99 Aligned_cols=124 Identities=19% Similarity=0.153 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEec-ccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEE
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~-~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 98 (432)
++.+++.|++|+||||++..+.......++...++- -+.+..+.++.+.+.+..+..+.. + ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~--~-------~~~------ 162 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG--E-------PGE------ 162 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEEC--C-------TTC------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEe--c-------CCC------
Confidence 447888899999999887777665544444444443 345555554444444444432210 0 000
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCC--CHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSL--NTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~--~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
..|..++...+......+++++|||=+- +.- ..+.+...++.+........-++.+.|+.
T Consensus 163 -~~p~~~~~~~l~~~~~~~~D~ViIDTpg-~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 163 -KDVVGIAKRGVEKFLSEKMEIIIVDTAG-RHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEECCC-SCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEeCCC-CcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 2344443222211111468999999987 333 33333333444433333334455566653
No 236
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.40 E-value=0.0025 Score=59.42 Aligned_cols=39 Identities=38% Similarity=0.358 Sum_probs=29.1
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEec
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~ 55 (432)
...+..++|.|||||||||++..++.......+..++.+
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ 158 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI 158 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc
Confidence 346678999999999999999888877655434455443
No 237
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.38 E-value=0.0028 Score=58.58 Aligned_cols=37 Identities=30% Similarity=0.387 Sum_probs=29.6
Q ss_pred HHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCC
Q 014006 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKS 49 (432)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~ 49 (432)
+--.+..|+.++++|||||||||++..++.......+
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g 200 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEER 200 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSC
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 3345678999999999999999999988877655443
No 238
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.35 E-value=0.013 Score=53.74 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=22.9
Q ss_pred HHHHHHhcCC--EEEEEcCCCCCHHHHHHHHHhh
Q 014006 12 TIVETVEQNP--VVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 12 ~i~~~i~~~~--~~ii~apTGsGKT~~~~~~~~~ 43 (432)
.+...+..++ ++++.||+|+|||+++..+...
T Consensus 32 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 32 RLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp HHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3444455543 4899999999999887766654
No 239
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.29 E-value=0.023 Score=52.82 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=27.4
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEec
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~ 55 (432)
+..|+.++|.||+|||||+++..++....... .+++++
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g-~~vlyi 95 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAG-GIAAFI 95 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC-CeEEEE
Confidence 44688999999999999988877776554333 344443
No 240
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.26 E-value=0.0062 Score=57.12 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
++.+++.||+|+|||+++..+.....
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35899999999999988887776654
No 241
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.24 E-value=0.0027 Score=69.58 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=27.7
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG 50 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~ 50 (432)
+.+|+.+.++||+||||||++..+........|.
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~ 446 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM 446 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 4679999999999999999998887766554443
No 242
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.17 E-value=0.027 Score=52.29 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=28.6
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEeccc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P 57 (432)
+..|..+.|.||+|||||+++..++...... +..++++..
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~-gg~VlyId~ 97 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKM-GGVAAFIDA 97 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEES
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEec
Confidence 3457889999999999999888887765433 334555433
No 243
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.15 E-value=0.0071 Score=55.03 Aligned_cols=53 Identities=25% Similarity=0.388 Sum_probs=35.3
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccc-hhhhHHHHHHHHH
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-RVAAVSVARRVAQ 71 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~-~~l~~q~~~~~~~ 71 (432)
+|+.+.+.||+||||||++..+........+...+...++ +..+.++.+.+++
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~ 152 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAE 152 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHH
Confidence 5678899999999999998888877665555555555554 3333333333433
No 244
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.10 E-value=0.004 Score=53.32 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=23.9
Q ss_pred HHHhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 15 ~~i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+.+|+.+.+.||+||||||++..+....
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 367899999999999999999998887765
No 245
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.07 E-value=0.0048 Score=56.50 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++.||+|+|||+++..+....
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 58999999999998877666543
No 246
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.05 E-value=0.073 Score=48.71 Aligned_cols=39 Identities=15% Similarity=0.286 Sum_probs=26.7
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEeccc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P 57 (432)
.++.+.+.|++|+||||++..+.......++...++-..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 355788999999999988777766655444444444433
No 247
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.04 E-value=0.0042 Score=50.61 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=26.5
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCC
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKS 49 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~ 49 (432)
.+|+.+.+.||+||||||++..+.... ...+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G 61 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG 61 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence 788899999999999999999888877 4444
No 248
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.02 E-value=0.0048 Score=51.51 Aligned_cols=27 Identities=19% Similarity=0.501 Sum_probs=23.2
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..|+.++++||+||||||++..+....
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 357899999999999999998887654
No 249
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.99 E-value=0.0092 Score=58.96 Aligned_cols=134 Identities=13% Similarity=0.101 Sum_probs=69.1
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCC--eeeeeeeecccCCC
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGE--EVGYAIRFEDRTSE 93 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~ 93 (432)
.+..|..++|.||+|||||+++..++...... +.+++++.+.. ...++..+. ..++..... ..|. ... ...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee-~~~~l~~~~-~~~g~~~~~~~~~g~-~~~---~~~ 349 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEE-SRAQLLRNA-YSWGMDFEEMERQNL-LKI---VCA 349 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSS-CHHHHHHHH-HTTSCCHHHHHHTTS-EEE---CCC
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeC-CHHHHHHHH-HHcCCCHHHHHhCCC-EEE---EEe
Confidence 35688999999999999999988887765543 44444333211 122333322 112211000 0000 000 000
Q ss_pred CceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHH-----HHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 94 RTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTD-----ILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 94 ~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~-----~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.+ .-.+.|...+.+.......+.+++|+| .= ..++.. ....+.+.+......+.-+++.|...
T Consensus 350 ~p--~~LS~g~~q~~~~a~~l~~~p~llilD-p~-~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 350 YP--ESAGLEDHLQIIKSEINDFKPARIAID-SL-SALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp CG--GGSCHHHHHHHHHHHHHTTCCSEEEEE-CH-HHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred cc--ccCCHHHHHHHHHHHHHhhCCCEEEEc-Ch-HHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 00 013677777776655556778999999 53 344444 33332222222223346677777654
No 250
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.98 E-value=0.0031 Score=59.31 Aligned_cols=38 Identities=34% Similarity=0.380 Sum_probs=29.0
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEe
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~ 54 (432)
+..|+.++++|||||||||++..++........+.++.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~ 170 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT 170 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEE
Confidence 56788999999999999999988887665442344433
No 251
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.97 E-value=0.006 Score=58.89 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=21.8
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+.+++.||+|+|||+++..+....
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34789999999999998888777654
No 252
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.96 E-value=0.038 Score=51.16 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=24.0
Q ss_pred HHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 12 ~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+.+ +.. ..++|.||.|+|||+++..+....
T Consensus 24 ~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 24 KLKG-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 3444 444 789999999999999888777654
No 253
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.96 E-value=0.0094 Score=55.48 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=35.0
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccc-hhhhHHHHHHHH
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR-RVAAVSVARRVA 70 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~-~~l~~q~~~~~~ 70 (432)
.++.+.+.||+||||||++..+........+...+...++ +..+.++.+.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~ 208 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWA 208 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHH
Confidence 4668899999999999998888877665555555555554 333333333343
No 254
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.96 E-value=0.0048 Score=52.51 Aligned_cols=28 Identities=11% Similarity=0.401 Sum_probs=23.7
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+.+|+.+.+.||+||||||++..+....
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4578999999999999999998887654
No 255
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.94 E-value=0.0058 Score=62.47 Aligned_cols=69 Identities=25% Similarity=0.223 Sum_probs=50.7
Q ss_pred chhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcC--CCCCcEEEecccchhhhHHHHHHHHHHhCC
Q 014006 5 PILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG--YTKSGIIGVTQPRRVAAVSVARRVAQELGV 75 (432)
Q Consensus 5 p~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~--~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~ 75 (432)
.+.+.|.+++.. .+..++|.|+.||||| +++..+..... .....+++++..|+..+.++.+++.+.++.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 356778888875 4678899999999999 44444443322 123457899999999999999998877653
No 256
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.94 E-value=0.0072 Score=54.88 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=25.8
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+.+|+.+.|+||+||||||++..++...
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45789999999999999999999888776
No 257
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.93 E-value=0.051 Score=51.69 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEec-ccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEE
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~-~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 98 (432)
++.+.+.|++|+||||++..+.......++...++- -+.+..+.++...+.+..+..+ +. . ...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v---~~-----~-~~~------ 162 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV---LE-----V-MDG------ 162 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE---EE-----C-CTT------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE---Ee-----c-CCC------
Confidence 457888899999999887777766654444444433 3445555444444444443321 00 0 000
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccC
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~ 161 (432)
..|..+...........+++++|||=+-....+.....+ +..+........-++.+.|+..
T Consensus 163 -~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~e-l~~i~~~~~pd~vlLVvDa~tg 223 (425)
T 2ffh_A 163 -ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGE-LARLKEVLGPDEVLLVLDAMTG 223 (425)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHH-HHHHHHHHCCSEEEEEEEGGGT
T ss_pred -CCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHH-HHHhhhccCCceEEEEEeccch
Confidence 134443222211111246899999987522334434433 3333332222244566677643
No 258
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.92 E-value=0.013 Score=53.41 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=31.1
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~ 58 (432)
+++.+.+.||+||||||++..+........+...+.-.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence 4679999999999999999888877766656555555554
No 259
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.90 E-value=0.058 Score=50.35 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=27.0
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEec
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~ 55 (432)
+..|+.++|.||+|+|||+++..++....... ..++++
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g-~~vlyi 108 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAG-GTCAFI 108 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCC-CeEEEE
Confidence 44678999999999999988877766543333 344444
No 260
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.86 E-value=0.0062 Score=52.63 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=24.4
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
.+.+|+.++++||+||||||++..+.....
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 467899999999999999999998887654
No 261
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.85 E-value=0.02 Score=55.10 Aligned_cols=55 Identities=7% Similarity=0.140 Sum_probs=36.0
Q ss_pred HHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHH
Q 014006 13 IVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV 69 (432)
Q Consensus 13 i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~ 69 (432)
++.-+..|+.++|.|++|+|||+++..++...... +..+++... -.-..|+..++
T Consensus 190 ~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSl-Ems~~ql~~R~ 244 (444)
T 3bgw_A 190 MTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSL-EMGKKENIKRL 244 (444)
T ss_dssp HHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECS-SSCTTHHHHHH
T ss_pred hcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEEC-CCCHHHHHHHH
Confidence 33346678899999999999998888887765443 456665532 12233444443
No 262
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.84 E-value=0.0052 Score=53.12 Aligned_cols=29 Identities=24% Similarity=0.474 Sum_probs=23.8
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+..|+.+.+.||+||||||++..+....
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999999888765
No 263
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.80 E-value=0.005 Score=52.30 Aligned_cols=27 Identities=37% Similarity=0.598 Sum_probs=21.2
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..|+.++++||+||||||++..+....
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 367889999999999999998887654
No 264
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.79 E-value=0.0092 Score=61.45 Aligned_cols=67 Identities=21% Similarity=0.179 Sum_probs=49.2
Q ss_pred hhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcC--CCCCcEEEecccchhhhHHHHHHHHHHhC
Q 014006 6 ILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHG--YTKSGIIGVTQPRRVAAVSVARRVAQELG 74 (432)
Q Consensus 6 ~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~--~~~~~~vl~~~P~~~l~~q~~~~~~~~~~ 74 (432)
+.+.|.+++.. .+..++|.|+.||||| +++..+..... .....+++++..|+.+|.++.+++.+.++
T Consensus 12 Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 12 LNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp SCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 56778888775 3567888999999999 45444444332 22345788899999999999998877654
No 265
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.77 E-value=0.041 Score=57.73 Aligned_cols=63 Identities=22% Similarity=0.261 Sum_probs=42.7
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccChHHHHhh
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKF 168 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~~~~~~~~ 168 (432)
.+.|...+..+....+.+.+++++||.- ..+|......+.+.+.. .+.-+|+.|. +.+.+..+
T Consensus 549 LSGGqkQRvaLArAL~~~P~lLLLDEPT-s~LD~~~~~~l~~~L~~---~g~tvIivSH--dl~~l~~~ 611 (986)
T 2iw3_A 549 LSGGWKMKLALARAVLRNADILLLDEPT-NHLDTVNVAWLVNYLNT---CGITSITISH--DSVFLDNV 611 (986)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEESTT-TTCCHHHHHHHHHHHHH---SCSEEEEECS--CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCc-cCCCHHHHHHHHHHHHh---CCCEEEEEEC--CHHHHHHh
Confidence 4677777777666667788999999998 78898887776665554 2355555544 44444444
No 266
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.77 E-value=0.016 Score=63.42 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=40.1
Q ss_pred cCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccC
Q 014006 100 LTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~ 161 (432)
.+.|.-.+..+.+..+.+.+++|+||+- ..+|......+.+.+.... .+.-+|+.|.-++
T Consensus 1172 LSgGq~Qrv~iARal~~~p~iLiLDEpT-s~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~ 1231 (1284)
T 3g5u_A 1172 LSGGQKQRIAIARALVRQPHILLLDEAT-SALDTESEKVVQEALDKAR-EGRTCIVIAHRLS 1231 (1284)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSEEEESCS-SSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTT
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHH
Confidence 4566666555555556677899999998 7899887666555554433 3456677666554
No 267
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.75 E-value=0.011 Score=64.69 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=51.1
Q ss_pred CchhhhHHHHHHHHhcCCEEEEEcCCCCCHH-HHHHHHHhhcCC----CCCcEEEecccchhhhHHHHHHHHHHh
Q 014006 4 LPILQYEETIVETVEQNPVVVVIGETGSGKS-TQLSQILHRHGY----TKSGIIGVTQPRRVAAVSVARRVAQEL 73 (432)
Q Consensus 4 lp~~~~q~~i~~~i~~~~~~ii~apTGsGKT-~~~~~~~~~~~~----~~~~~vl~~~P~~~l~~q~~~~~~~~~ 73 (432)
....+.|++++.. .+++++|.|.-||||| +++..++..... ....+++++.+|+..+.++.+++.+.+
T Consensus 9 ~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 9 STWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp -CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 4567788888875 4789999999999999 555555554432 134589999999999999998886644
No 268
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.65 E-value=0.0052 Score=51.65 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=23.9
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhh
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~ 43 (432)
.+.+|+.+++.||+||||||++..+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4667899999999999999999888665
No 269
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.64 E-value=0.015 Score=59.32 Aligned_cols=60 Identities=20% Similarity=0.174 Sum_probs=35.3
Q ss_pred cCHHHHHHHHhcCCCCCCCc--EEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 100 LTDGVLLREILSNPDLSPYS--VIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 100 ~T~~~l~~~l~~~~~l~~~~--~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.+-|...+..+......+.+ ++++||.- ..+|......+++.+......+.-+|+.|.-+
T Consensus 203 LSGGe~QRv~iArAL~~~p~~~lLlLDEPt-sgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPS-IGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp SCHHHHHHHHHHHHHHTCCCSCEEEEECTT-TTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEECCc-cCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 45555555554444455666 99999987 56777665554444444333345566655543
No 270
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.58 E-value=0.0085 Score=51.27 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.4
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..|+.+++.||+||||||++..+....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 468899999999999999998887665
No 271
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.52 E-value=0.011 Score=50.04 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=23.3
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..|+.++++||+|+||||++..++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 468899999999999999998887654
No 272
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.51 E-value=0.06 Score=52.48 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 10 EETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 10 q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+.+...+..+.++++.||+|+|||+++..+....
T Consensus 31 i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 31 IRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 34456667788999999999999998888776654
No 273
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.027 Score=52.97 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=21.6
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+-+++.||+|+|||.++..++...
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 45678999999999998888887655
No 274
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.49 E-value=0.0091 Score=58.98 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.1
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHH
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQI 40 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~ 40 (432)
.+.+|+.+++.||+||||||++..+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 4668999999999999999998874
No 275
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.48 E-value=0.0094 Score=50.72 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=23.8
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+.+|..+++.||+||||||++..+....
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5678999999999999999998877655
No 276
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.45 E-value=0.018 Score=55.12 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
.+++++|++|+||||++..+.....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3788999999999988777766554
No 277
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.41 E-value=0.051 Score=52.92 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=22.0
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.....+++.||+|+|||+++..+....
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 345689999999999998888776654
No 278
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.39 E-value=0.0093 Score=50.00 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
++.+++.||+||||||++..+.....
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46788999999999999988877653
No 279
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.38 E-value=0.017 Score=55.89 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+.+++.||+|+|||+++..+....
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3568999999999999888777654
No 280
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.34 E-value=0.12 Score=49.47 Aligned_cols=123 Identities=18% Similarity=0.229 Sum_probs=61.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEe--cccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEE
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV--TQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~--~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 98 (432)
+.++++|++|+||||.+..++.......+.++++ .-|.+..+.++...+....+..+... + ..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~-~----------~~---- 165 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPS-D----------VG---- 165 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCC-C----------SS----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeC-C----------CC----
Confidence 3677889999999987776666554432334433 34556655555444444444332110 0 00
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEeccc
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATL 160 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~ 160 (432)
.+|..+....+......+++++|||=+-....+...... +..+........-++.+.|+.
T Consensus 166 -~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~-L~~~~~~~~p~~vllVvda~~ 225 (433)
T 2xxa_A 166 -QKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDE-IKQVHASINPVETLFVVDAMT 225 (433)
T ss_dssp -SCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHH-HHHHHHHSCCSEEEEEEETTB
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHH-HHHHHHhhcCcceeEEeecch
Confidence 135444322221111146899999997522233333333 344333322223344466664
No 281
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.33 E-value=0.025 Score=55.96 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=22.4
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+..+++.||+|+|||+++..+....
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47799999999999999988777665
No 282
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.29 E-value=0.039 Score=57.15 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++.||||+|||.++..+....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999998877666554
No 283
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.27 E-value=0.012 Score=51.53 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=26.8
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEe
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~ 54 (432)
+..|+.+++.||+|+|||+++..++.......+ .+++
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~-~v~~ 56 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGE-PGIY 56 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTC-CEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC-eEEE
Confidence 567899999999999999887777655433333 3443
No 284
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.23 E-value=0.0057 Score=52.37 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=23.3
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
.+|..+.|.||+||||||++..+.....
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567899999999999999988877654
No 285
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.19 E-value=0.037 Score=58.10 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.2
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHH
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQI 40 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~ 40 (432)
.+|+.++|.||+||||||++..+
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 35789999999999999998776
No 286
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.11 E-value=0.053 Score=61.04 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=30.0
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~ 58 (432)
+.+++++++.||+|+|||+++..++..... .+.+++++..-
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~-~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAE 1464 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEEcc
Confidence 346899999999999999888777665543 35566666544
No 287
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.04 E-value=0.079 Score=51.93 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHH
Q 014006 11 ETIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV 69 (432)
Q Consensus 11 ~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~ 69 (432)
.+++.-+..|+.++|.|++|+|||+++..++.......+..++++.- ..-..++..++
T Consensus 233 D~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~-E~s~~~l~~r~ 290 (503)
T 1q57_A 233 NDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML-EESVEETAEDL 290 (503)
T ss_dssp HHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES-SSCHHHHHHHH
T ss_pred hHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec-cCCHHHHHHHH
Confidence 44444567889999999999999998888887665442444554422 22234555554
No 288
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.04 E-value=0.017 Score=48.86 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=23.0
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+.+++.+++.|++||||||++..+....
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4678899999999999999988887655
No 289
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.03 E-value=0.0089 Score=52.05 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=18.9
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHH-hhc
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQIL-HRH 44 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~-~~~ 44 (432)
.+.+|+.+.+.||+||||||++..+. ...
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35678999999999999999988777 543
No 290
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.01 E-value=0.012 Score=53.71 Aligned_cols=31 Identities=19% Similarity=0.069 Sum_probs=25.5
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYT 47 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~ 47 (432)
+.+|..+.|.||+||||||++..+.......
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 5678899999999999999998887766443
No 291
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.99 E-value=0.033 Score=46.69 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=27.0
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccch
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRR 59 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~ 59 (432)
+...+++..++|.|||+.+..+..... ..|.++++++=.+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~-g~G~rV~~vQF~K 66 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV-GHGKNVGVVQFIK 66 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH-HTTCCEEEEESSC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEEeeC
Confidence 345778889999999977666655543 3456777775433
No 292
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.88 E-value=0.063 Score=51.27 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=22.5
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
...+-+++.||+|+|||.++..++...
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 356789999999999998888887655
No 293
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.85 E-value=0.034 Score=46.17 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=25.1
Q ss_pred HHHHHHHHhc--CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 10 EETIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 10 q~~i~~~i~~--~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++.+.+.. +..+++.||+|+|||+++..+....
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3445555543 4689999999999998877666543
No 294
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.83 E-value=0.016 Score=49.38 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=24.1
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+..+..++++||+||||||++..+....
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45678899999999999999988877655
No 295
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.78 E-value=0.021 Score=48.38 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=22.7
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.++..+++.||+||||||++..+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 467899999999999999998887655
No 296
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.63 E-value=0.07 Score=56.00 Aligned_cols=32 Identities=25% Similarity=0.471 Sum_probs=23.4
Q ss_pred HHHHHhc--CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 13 IVETVEQ--NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 13 i~~~i~~--~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+++.+.. ..++++.||+|+|||+++..+....
T Consensus 182 l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 182 VIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp HHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4444433 4578999999999998887776654
No 297
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.59 E-value=0.02 Score=48.90 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=22.4
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.++..+.|.||+||||||++..+....
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467788999999999999998877654
No 298
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.57 E-value=0.17 Score=49.32 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=60.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEec-ccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEEEc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT-QPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIKYL 100 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~-~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~ 100 (432)
.++++|++|+||||++..++......+....++. -|.+..+.++.+......+..+ ++. ... .
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v---~~~------~~~-------~ 166 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF---YGS------YTE-------M 166 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE---EEC------CCC-------S
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceE---Ecc------CCC-------C
Confidence 6788899999999888777765543322233332 2445555444444444333321 110 000 0
Q ss_pred CHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhcCCcEEEEEecccC
Q 014006 101 TDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLD 161 (432)
Q Consensus 101 T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~~~~~ii~~SAT~~ 161 (432)
.|..+...........+++++|||-+-....+..+... +..+........-++.+.|+..
T Consensus 167 dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~e-l~~~~~~i~pd~vllVvDa~~g 226 (504)
T 2j37_W 167 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEE-MLQVANAIQPDNIVYVMDASIG 226 (504)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHH-HHHHHHHHCCSEEEEEEETTCC
T ss_pred CHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHH-HHHHHhhhcCceEEEEEecccc
Confidence 12222211111101146789999998633333344333 3333222222345777788764
No 299
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.56 E-value=0.26 Score=51.67 Aligned_cols=45 Identities=20% Similarity=0.144 Sum_probs=28.8
Q ss_pred CCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhh-c-CCcEEEEEeccc
Q 014006 115 LSPYSVIILDEAHERSLNTDILLGLVKRLVNLR-A-SKLKILITSATL 160 (432)
Q Consensus 115 l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~-~-~~~~ii~~SAT~ 160 (432)
..+.+++++||.- +..|......+...++... . .+..+++.|.-+
T Consensus 750 a~~p~LlLLDEP~-~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~ 796 (918)
T 3thx_B 750 ATSQSLVILDELG-RGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP 796 (918)
T ss_dssp CCTTCEEEEESTT-TTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred ccCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH
Confidence 5678899999998 8888877666554444432 1 235555554433
No 300
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.52 E-value=0.026 Score=46.38 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=21.9
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+..+++.|++||||||++..+....
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999998877655
No 301
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.52 E-value=0.013 Score=51.46 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=27.0
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEec
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~ 55 (432)
+..|..+++.|++|+|||+++..++.......+..++++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~ 65 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceee
Confidence 456889999999999999888777654322223344443
No 302
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.45 E-value=0.057 Score=49.20 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=26.8
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhcC--CCCCcEEE
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRHG--YTKSGIIG 53 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~~--~~~~~~vl 53 (432)
..+..+.|.||+||||||++..+..... ...+...+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence 4567899999999999999988877654 34443333
No 303
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.43 E-value=0.025 Score=51.20 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+..++|+||||||||+++..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4568899999999999888776654
No 304
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.41 E-value=0.023 Score=52.09 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+..++|+||||||||++...++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4578999999999999888776654
No 305
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.41 E-value=0.06 Score=50.90 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=21.6
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+-+++.||+|+|||.++.+++...
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHHh
Confidence 34779999999999998888777655
No 306
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.37 E-value=0.038 Score=45.72 Aligned_cols=33 Identities=12% Similarity=0.367 Sum_probs=24.3
Q ss_pred HHHHHHhc--CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 12 TIVETVEQ--NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 12 ~i~~~i~~--~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+.+.+.. ...+++.||+|+|||+++..+....
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34444443 5689999999999998887776654
No 307
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.35 E-value=0.019 Score=48.28 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
|+.+.+.||+||||||++..++....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 46788999999999999888877665
No 308
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.33 E-value=0.045 Score=51.90 Aligned_cols=28 Identities=36% Similarity=0.415 Sum_probs=23.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhcCCCCC
Q 014006 22 VVVVIGETGSGKSTQLSQILHRHGYTKS 49 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~~~~~~ 49 (432)
.+.+.||+|+||||++..+........+
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~G 98 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEG 98 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCc
Confidence 8999999999999999998886654443
No 309
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.28 E-value=0.042 Score=45.57 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
...+|.||+|||||+++..+....
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 378899999999999988887654
No 310
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.26 E-value=0.077 Score=48.47 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 22 VVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
.+.|.||+||||||++..+.....
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999887766554
No 311
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.19 E-value=0.032 Score=46.63 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+.++|+||+|+||||++..++...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999988776654
No 312
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.19 E-value=0.026 Score=47.78 Aligned_cols=29 Identities=31% Similarity=0.271 Sum_probs=24.3
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
..++..+++.||+||||||++..+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999888776654
No 313
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.17 E-value=0.029 Score=46.22 Aligned_cols=26 Identities=35% Similarity=0.603 Sum_probs=21.7
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
++..+++.|++||||||++..+....
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 46789999999999999988776544
No 314
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.12 E-value=0.024 Score=47.45 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHh
Q 014006 20 NPVVVVIGETGSGKSTQLSQILH 42 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~ 42 (432)
|+.+++.||+||||||++..+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 45788999999999999988765
No 315
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.11 E-value=0.042 Score=45.33 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+..++++|++||||||++..+....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5678999999999999998887665
No 316
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.10 E-value=0.028 Score=49.37 Aligned_cols=29 Identities=31% Similarity=0.281 Sum_probs=23.0
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+.++..+.|.||+||||||++..+....
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678889999999999999988776644
No 317
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.02 E-value=0.042 Score=56.71 Aligned_cols=78 Identities=9% Similarity=0.066 Sum_probs=65.1
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCc-ccccccCC
Q 014006 213 EGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIA-ETSLTVDG 291 (432)
Q Consensus 213 ~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~-~~Gidi~~ 291 (432)
+.+++|.+||+.-+++.++.+.+.+.. .++.+..+||+++..+|....+.+.+|..+|+|+|... ...+++.+
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~------~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~ 490 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSK------FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKN 490 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTC------SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhh------cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccC
Confidence 569999999999999999999887532 36789999999999999888888888999999999743 34567888
Q ss_pred eEEEE
Q 014006 292 VVYVI 296 (432)
Q Consensus 292 v~~VI 296 (432)
+.+||
T Consensus 491 l~lVV 495 (780)
T 1gm5_A 491 LGLVI 495 (780)
T ss_dssp CCEEE
T ss_pred CceEE
Confidence 87776
No 318
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.01 E-value=0.038 Score=46.83 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=21.9
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
.+..+.+.|++||||||++..+.....
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456889999999999999887766543
No 319
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.98 E-value=0.052 Score=50.32 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=26.7
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYT 47 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~ 47 (432)
+.+|+.+.+.||+|+||||++..++......
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 5689999999999999999998888876543
No 320
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.93 E-value=0.23 Score=51.16 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+-+++.||+|+|||+++..++...
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999988887654
No 321
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.92 E-value=0.083 Score=48.48 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=28.7
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCC-----CcEEEecc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTK-----SGIIGVTQ 56 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~-----~~~vl~~~ 56 (432)
+..|+.+++.||+|+|||+++..++....... +..++++.
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 45678999999999999988887776543221 34566553
No 322
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.91 E-value=0.095 Score=47.89 Aligned_cols=56 Identities=7% Similarity=0.137 Sum_probs=36.5
Q ss_pred HHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHH
Q 014006 12 TIVETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRV 69 (432)
Q Consensus 12 ~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~ 69 (432)
+++--+..|+.++|.|++|+|||+++..++...... +..+++... -.-..++..++
T Consensus 60 ~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g~~vl~~sl-E~s~~~l~~R~ 115 (315)
T 3bh0_A 60 RMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSL-EMGKKENIKRL 115 (315)
T ss_dssp HHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT-TCEEEEEES-SSCHHHHHHHH
T ss_pred hhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEEC-CCCHHHHHHHH
Confidence 344446678999999999999998888777655433 345555432 23344555554
No 323
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.91 E-value=0.032 Score=49.75 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhcCCCCC
Q 014006 22 VVVVIGETGSGKSTQLSQILHRHGYTKS 49 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~~~~~~ 49 (432)
++.+.||+|+||||++..+........|
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G 31 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKA 31 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 4678999999999999988877654433
No 324
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.86 E-value=0.045 Score=45.49 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
...+++.|++||||||+...+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999988776654
No 325
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=93.80 E-value=0.45 Score=44.73 Aligned_cols=100 Identities=19% Similarity=0.242 Sum_probs=53.9
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceE
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLI 97 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 97 (432)
..+..+++.|++|+|||.++..+........+.-+.+-+ .++..+... .+.||...|...|.. ..
T Consensus 158 ~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~--~~~~~~~~~--~elfg~~~g~~tga~-------~~---- 222 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNV--ASIPRDIFE--AELFGYEKGAFTGAV-------SS---- 222 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEET--TTSCHHHHH--HHHHCBCTTSSTTCC-------SC----
T ss_pred CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEec--CCCCHHHHH--HHhcCCCCCCCCCcc-------cc----
Confidence 456678999999999997766555444333333333222 122233322 456666555444410 00
Q ss_pred EEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHh
Q 014006 98 KYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVN 145 (432)
Q Consensus 98 ~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~ 145 (432)
.+|.+.. .+=+.+++||++ .+..+....+++.+..
T Consensus 223 ---~~g~~~~--------a~~gtlfldei~--~l~~~~q~~Ll~~l~~ 257 (387)
T 1ny5_A 223 ---KEGFFEL--------ADGGTLFLDEIG--ELSLEAQAKLLRVIES 257 (387)
T ss_dssp ---BCCHHHH--------TTTSEEEEESGG--GCCHHHHHHHHHHHHH
T ss_pred ---cCCceee--------CCCcEEEEcChh--hCCHHHHHHHHHHHhc
Confidence 1222221 123699999999 4566666655555443
No 326
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.79 E-value=0.034 Score=46.67 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=20.1
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhh
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~ 43 (432)
.+.-++|.||||+|||+++..++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3567899999999999887776554
No 327
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.78 E-value=0.12 Score=54.22 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+++.||||+|||+++..+....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999998887776654
No 328
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.78 E-value=0.039 Score=48.70 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.++|.|||||||||++..+....
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 57899999999999988877654
No 329
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.76 E-value=0.16 Score=53.93 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHH
Q 014006 20 NPVVVVIGETGSGKSTQLSQI 40 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~ 40 (432)
|+.++|.||+||||||++..+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 789999999999999988776
No 330
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.73 E-value=0.094 Score=45.44 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=24.6
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhcCC
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRHGY 46 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~~~ 46 (432)
..|..+++.|+.||||||++..+......
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 46778999999999999999888777654
No 331
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.72 E-value=0.039 Score=51.00 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=28.5
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEe
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGV 54 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~ 54 (432)
+.++..+.+.||+||||||++..+........+...+.
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~ 89 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVL 89 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEE
Confidence 34678999999999999999998887655444444443
No 332
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.71 E-value=0.04 Score=49.77 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..++|+||||||||+++..+....
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 467889999999999888776654
No 333
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.68 E-value=0.05 Score=45.34 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=23.0
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCC
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGY 46 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~ 46 (432)
.+..+++.|+.||||||++..+......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5678899999999999998877766543
No 334
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.68 E-value=0.11 Score=48.21 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=28.5
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCC-----CCcEEEecc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYT-----KSGIIGVTQ 56 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~-----~~~~vl~~~ 56 (432)
+..|+.++|.||+|||||+++..++...... .+..++++.
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3467889999999999998888777753221 244666554
No 335
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.65 E-value=0.053 Score=51.30 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=31.0
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchh
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRV 60 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~ 60 (432)
.+.+++|.|+||||||+++..++..... .+.+++++-|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~-~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM-QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH-CCCEEEEEeCCcC
Confidence 5678899999999999888777765543 3556677777665
No 336
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.63 E-value=0.046 Score=50.05 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..++|+|+.||||||++..++...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 367899999999999999887653
No 337
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.62 E-value=0.045 Score=43.93 Aligned_cols=24 Identities=42% Similarity=0.666 Sum_probs=19.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhh
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~ 43 (432)
....+|.||+|||||+++.++...
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346788999999999888777553
No 338
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.61 E-value=0.047 Score=45.55 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=21.3
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+..+++.|+.||||||++..+....
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35788999999999999988776644
No 339
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.58 E-value=0.029 Score=54.15 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=28.6
Q ss_pred HHHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCC
Q 014006 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKS 49 (432)
Q Consensus 15 ~~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~ 49 (432)
-.+.+|+.+.|.||+||||||++..++.......|
T Consensus 133 l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 133 MSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp HHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred eEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 34678999999999999999999988877654444
No 340
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.52 E-value=0.048 Score=47.81 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=21.8
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+..+++.||+||||||++..+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999998887443
No 341
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.49 E-value=0.16 Score=57.18 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=52.8
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCc
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERT 95 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (432)
.+..++++++.||+|||||+++..++...... +.+++++. ..++..++. ++.++.......-. .+.
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~-Ge~~~Fit-~ee~~~~L~---a~~~G~dl~~l~~~--------~pd- 1142 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFID-AEHALDPIY---ARKLGVDIDNLLCS--------QPD- 1142 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEC-TTSCCCHHH---HHHTTCCTTTCEEE--------CCS-
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEE-ccccHHHHH---HHHcCCChhHheee--------cCc-
Confidence 46689999999999999998888777665544 45555553 233334443 24445443322211 010
Q ss_pred eEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCC
Q 014006 96 LIKYLTDGVLLREILSNPDLSPYSVIILDEAH 127 (432)
Q Consensus 96 ~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h 127 (432)
+.+...+....-.....+++|||||+-
T Consensus 1143 -----~~e~~~~i~~~l~~~~~~dlvVIDsl~ 1169 (2050)
T 3cmu_A 1143 -----TGEQALEICDALARSGAVDVIVVDSVA 1169 (2050)
T ss_dssp -----SHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred -----chHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 222222222111124568999999976
No 342
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.48 E-value=0.11 Score=44.00 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.0
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCC
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGY 46 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~ 46 (432)
.+..+++.|+.||||||++..+......
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4667899999999999999888776543
No 343
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.48 E-value=0.088 Score=47.79 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=25.2
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCC
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYT 47 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~ 47 (432)
.+..++.+.+.||+|+||||++..+. .....
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~ 191 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELR 191 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCc
Confidence 34568899999999999999999888 55443
No 344
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.46 E-value=0.04 Score=46.85 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=24.1
Q ss_pred HHHhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 15 ~~i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+.+..+..+.|.|++||||||++..+....
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345667789999999999999988776543
No 345
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.45 E-value=0.14 Score=52.91 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhcCC-----------EEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCC
Q 014006 7 LQYEETIVETVEQNP-----------VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGV 75 (432)
Q Consensus 7 ~~~q~~i~~~i~~~~-----------~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~ 75 (432)
....+.+...+.... ++++.||||+|||+++..+.... +...+.+.-...... .
T Consensus 464 ~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l----~~~~~~i~~s~~~~~-----------~ 528 (758)
T 1r6b_X 464 DKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----GIELLRFDMSEYMER-----------H 528 (758)
T ss_dssp HHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH----TCEEEEEEGGGCSSS-----------S
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh----cCCEEEEechhhcch-----------h
Q ss_pred ccCCeeeeeeeecccCCCCceEEEcCHHHHHHHHhcCCCCCCCcEEEEeCCCcCCCCHHHHHHHHHHHHhhhc-------
Q 014006 76 RLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRA------- 148 (432)
Q Consensus 76 ~~~~~~g~~~~~~~~~~~~~~i~v~T~~~l~~~l~~~~~l~~~~~vViDE~h~~~~~~~~~~~~l~~~~~~~~------- 148 (432)
.+...+| .+...+-+...+.+...+...+ .++|++||++ ....+.+..++..+-...-
T Consensus 529 ~~~~l~g---------~~~g~~g~~~~~~l~~~~~~~~----~~vl~lDEi~--~~~~~~~~~Ll~~le~~~~~~~~g~~ 593 (758)
T 1r6b_X 529 TVSRLIG---------APPGYVGFDQGGLLTDAVIKHP----HAVLLLDEIE--KAHPDVFNILLQVMDNGTLTDNNGRK 593 (758)
T ss_dssp CCSSSCC---------CCSCSHHHHHTTHHHHHHHHCS----SEEEEEETGG--GSCHHHHHHHHHHHHHSEEEETTTEE
T ss_pred hHhhhcC---------CCCCCcCccccchHHHHHHhCC----CcEEEEeCcc--ccCHHHHHHHHHHhcCcEEEcCCCCE
Q ss_pred ---CCcEEEEEe
Q 014006 149 ---SKLKILITS 157 (432)
Q Consensus 149 ---~~~~ii~~S 157 (432)
.+..+|+.|
T Consensus 594 ~~~~~~~iI~ts 605 (758)
T 1r6b_X 594 ADFRNVVLVMTT 605 (758)
T ss_dssp EECTTEEEEEEE
T ss_pred EecCCeEEEEec
No 346
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.41 E-value=0.07 Score=43.72 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
..+.+.|++||||||++..++..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4678999999999998888776554
No 347
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.40 E-value=0.041 Score=45.77 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=21.6
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.|..+++.|+.||||||++..+....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46678999999999999988776544
No 348
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.40 E-value=0.057 Score=44.13 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++.|+.||||||++..+....
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999988877654
No 349
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.38 E-value=0.052 Score=50.11 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+.+++.||+|+|||+++..+....
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 678999999999999988887654
No 350
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=93.31 E-value=0.45 Score=43.14 Aligned_cols=109 Identities=13% Similarity=-0.023 Sum_probs=64.1
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcccccc--
Q 014006 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLT-- 288 (432)
Q Consensus 211 ~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~~Gid-- 288 (432)
..+.++|||+...+..+-+-+.+.. .++...-+.|.....+ .+. ++....|.+.|...+-|++
T Consensus 123 ~~~~kVLIfsq~t~~LDilE~~l~~----------~~~~y~RlDG~~~~~~-~k~----~~~~~~i~Lltsag~~gin~~ 187 (328)
T 3hgt_A 123 EYETETAIVCRPGRTMDLLEALLLG----------NKVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSSEGINFTKYP 187 (328)
T ss_dssp TSCEEEEEEECSTHHHHHHHHHHTT----------SSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSC
T ss_pred hCCCEEEEEECChhHHHHHHHHHhc----------CCCceEeCCCCchhhh-hhc----ccCCceEEEEECCCCCCcCcc
Confidence 3567999999988888877777654 4777788888744332 221 2345566666776666776
Q ss_pred ---cCCeEEEEeCCcccceeecCCCCCccceEeeecHhhHHHhhcccCCC-----CCCeEEEecCccchhh
Q 014006 289 ---VDGVVYVIDCGYVKQRQYNPSSGMYSLDVVQISKVQANQRVGRAGRT-----RPGKCYRLYPSTVYHD 351 (432)
Q Consensus 289 ---i~~v~~VI~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~qr~GRaGR~-----~~G~~~~l~~~~~~~~ 351 (432)
....+.||-+|- .+|+. ...+|.+-|+.|. ++=.+|+|++....++
T Consensus 188 ~~nl~~aD~VI~~Ds----dwNp~-------------~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 188 IKSKARFDMLICLDT----TVDTS-------------QKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CCCCSCCSEEEECST----TCCTT-------------SHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred cccCCCCCEEEEECC----CCCCC-------------ChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 556777775431 12221 1234544343333 4567999998877766
No 351
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.30 E-value=0.071 Score=46.68 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=22.1
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.....+++.||.||||||++..+....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 355678999999999999998876654
No 352
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.30 E-value=0.05 Score=47.17 Aligned_cols=37 Identities=35% Similarity=0.440 Sum_probs=26.9
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~ 58 (432)
.+|..+.+.|+.||||||++..+... .+...+.-.|.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 45778999999999999998876554 34455555553
No 353
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.29 E-value=0.052 Score=44.95 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=22.4
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+..+++.|++||||||++..+....
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999988776554
No 354
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.27 E-value=0.054 Score=46.47 Aligned_cols=29 Identities=31% Similarity=0.621 Sum_probs=23.8
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+...+.+++.||+||||+|++..+....
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566788899999999999998887765
No 355
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.26 E-value=0.05 Score=44.52 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=17.5
Q ss_pred CEEEEEcCCCCCHHHHHHHH
Q 014006 21 PVVVVIGETGSGKSTQLSQI 40 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~ 40 (432)
..+++.|++||||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36789999999999998877
No 356
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.24 E-value=0.078 Score=47.74 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+..++++||+||||||++..+....
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999998887654
No 357
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.19 E-value=0.07 Score=47.00 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=22.9
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+..+.|.||+||||||++..+...+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 457889999999999999998887554
No 358
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.13 E-value=0.081 Score=44.29 Aligned_cols=28 Identities=32% Similarity=0.651 Sum_probs=23.4
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+..+..+++.|+.||||||++..+....
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999988776654
No 359
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.10 E-value=0.073 Score=45.97 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=21.5
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.....+++.|++||||||++..+....
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 445789999999999999998877654
No 360
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.03 E-value=0.083 Score=50.60 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=28.0
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCC
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHGYTKS 49 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~ 49 (432)
.+.+|+.+.|.||+||||||++..++.......+
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G 186 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVI 186 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccCCCeE
Confidence 3568999999999999999999888887654433
No 361
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.03 E-value=0.065 Score=45.01 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=24.3
Q ss_pred HHHhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 15 ETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 15 ~~i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+..+..+++.|++||||||++..+....
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345567889999999999999988776654
No 362
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.01 E-value=0.073 Score=44.30 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=21.9
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhh
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~ 43 (432)
..+..+++.|++||||||+...+...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999998877665
No 363
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.99 E-value=0.069 Score=45.10 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.4
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+..+++.|+.||||||++..+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999998877654
No 364
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.93 E-value=0.089 Score=43.41 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
..++++|++||||||++..++....
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5788999999999999888876543
No 365
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.93 E-value=0.065 Score=49.19 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..++|.||||||||+++..+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 478899999999999888777654
No 366
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.82 E-value=0.07 Score=45.04 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=19.7
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhh
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~ 43 (432)
..+.+++.||.|+|||+++..++..
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999887766554
No 367
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.81 E-value=0.07 Score=45.95 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+..+.+.||+||||||++..+....
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999988776654
No 368
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.79 E-value=0.055 Score=45.20 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=21.5
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+..+++.|+.||||||++..+....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999988776654
No 369
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.78 E-value=0.034 Score=45.81 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhcCC
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRHGY 46 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~~~ 46 (432)
+.+.|+|++||||||++..++.....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 46788999999999998888776644
No 370
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.77 E-value=0.11 Score=48.20 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=25.1
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
...|+.+.+.||+|+||||++..++....
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred hcCCCEEEEECCCCccHHHHHHHHhcccc
Confidence 45789999999999999999998887654
No 371
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.76 E-value=0.064 Score=49.32 Aligned_cols=35 Identities=9% Similarity=0.159 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 10 EETIVETVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 10 q~~i~~~i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
...+...+..++++++.||+|+|||+++..+....
T Consensus 36 ~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 36 INRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34455566778899999999999998887776654
No 372
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.74 E-value=0.074 Score=48.50 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..++|+||||||||++...+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999888776654
No 373
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.73 E-value=0.075 Score=43.78 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=18.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHh
Q 014006 21 PVVVVIGETGSGKSTQLSQILH 42 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~ 42 (432)
..+++.|++||||||++..+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3678999999999999887765
No 374
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.65 E-value=0.18 Score=42.82 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=22.7
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.++..+++.|+.||||||++..+....
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457789999999999999988777654
No 375
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.61 E-value=0.1 Score=45.90 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+.+++.||+|+|||+++..+....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4578999999999999888777654
No 376
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.59 E-value=0.077 Score=43.84 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=21.7
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+|..+++.|+.||||||++..+....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57788999999999999888776654
No 377
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.57 E-value=0.11 Score=47.10 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
...+++.||+|+|||+++..+....
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999998887776654
No 378
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.56 E-value=0.12 Score=48.19 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=21.8
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+..+++.||+|+|||+++..+....
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999998888777655
No 379
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.50 E-value=0.081 Score=51.11 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=26.2
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG 50 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~ 50 (432)
+.+ +.+.+.||+||||||++..+........|.
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 59 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTL 59 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTT
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence 345 788999999999999999888776554443
No 380
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=92.47 E-value=0.066 Score=51.42 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=30.6
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhh
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAA 62 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~ 62 (432)
.+.+++|.|+||||||+++..++..... .+..++++-|..+..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~-~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLL-RGDRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHH-TTCEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCCCchh
Confidence 3567889999999999766555544332 345778888887764
No 381
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.45 E-value=0.078 Score=48.09 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=22.8
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..++.+++.||+|+|||+++..+....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 457789999999999999888887654
No 382
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.39 E-value=0.11 Score=47.07 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=24.8
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGY 46 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~ 46 (432)
+..++.+.+.||+|+||||++..+......
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccc
Confidence 456889999999999999999888765543
No 383
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.34 E-value=0.074 Score=49.94 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..++|+||||||||+++..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 467899999999998887776554
No 384
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.33 E-value=0.077 Score=44.84 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
...+++.|+.||||||++..+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999988776654
No 385
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.32 E-value=0.084 Score=52.08 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=28.0
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEE
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGII 52 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~v 52 (432)
+.+|..+++.|++||||||++..+........+..+
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i 401 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCV 401 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCE
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceE
Confidence 457889999999999999999888877654444333
No 386
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.25 E-value=0.096 Score=46.04 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
++.+++.|++||||||++..+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999988777654
No 387
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.21 E-value=0.11 Score=44.18 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=24.5
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
.+..+..+++.|+.||||||++..+.....
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356788999999999999999887766543
No 388
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.21 E-value=0.088 Score=43.95 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+..+++.|++||||||++..+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999988776544
No 389
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.15 E-value=0.11 Score=48.68 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=23.9
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+..++.+++.||+||||||++..+....
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5678899999999999999988777643
No 390
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.13 E-value=0.062 Score=50.27 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=25.7
Q ss_pred HHhc--CCEEEEEcCCCCCHHHHHHHHHhhcCC
Q 014006 16 TVEQ--NPVVVVIGETGSGKSTQLSQILHRHGY 46 (432)
Q Consensus 16 ~i~~--~~~~ii~apTGsGKT~~~~~~~~~~~~ 46 (432)
.+.+ ++.+.|.||+||||||++..+......
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456 888999999999999999988877644
No 391
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.10 E-value=0.099 Score=44.47 Aligned_cols=23 Identities=30% Similarity=0.640 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++.||+||||+|++..+....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999998887765
No 392
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.08 E-value=0.11 Score=42.93 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=25.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHH
Q 014006 23 VVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQE 72 (432)
Q Consensus 23 ~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~ 72 (432)
++|.|++|||||+++..+... +..++++..-...-.+..+++.+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-----APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-----CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-----CCCeEEEecCCCCCHHHHHHHHHH
Confidence 578999999999998887654 223455544222223334444443
No 393
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.06 E-value=0.26 Score=49.90 Aligned_cols=68 Identities=13% Similarity=0.175 Sum_probs=48.9
Q ss_pred CCchhhhHHHHHHH----HhcCC-EEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhC
Q 014006 3 NLPILQYEETIVET----VEQNP-VVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELG 74 (432)
Q Consensus 3 ~lp~~~~q~~i~~~----i~~~~-~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~ 74 (432)
.++-+..|.+.+.. +.+|. ...+.|-||||||.++..++... +..++++.|...+|.|++..+..+++
T Consensus 10 ~~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~----~~~~lvv~~~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 10 KYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV----NKPTLVIAHNKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp SCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----CCCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHHHHHHHcC
Confidence 45556667665554 44554 56788999999996555554443 22588999999999999999988875
No 394
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.04 E-value=0.11 Score=45.72 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+.+++.||+|+|||+++..+....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999998887655
No 395
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.00 E-value=0.11 Score=48.40 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=27.4
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEec
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVT 55 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~ 55 (432)
+..++.++|.|++|+|||+++..++...... +.+++++
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi 97 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFI 97 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEE
Confidence 4478899999999999998887777654433 3345444
No 396
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.99 E-value=0.074 Score=50.50 Aligned_cols=31 Identities=32% Similarity=0.578 Sum_probs=24.9
Q ss_pred HHHHHhcCCE--EEEEcCCCCCHHHHHHHHHhh
Q 014006 13 IVETVEQNPV--VVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 13 i~~~i~~~~~--~ii~apTGsGKT~~~~~~~~~ 43 (432)
+--.+..|.. +.|.||+|+||||++..++..
T Consensus 33 vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 3345678998 999999999999999988765
No 397
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.99 E-value=0.12 Score=42.09 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+++++.|+.||||||+...+...+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999988776654
No 398
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.93 E-value=0.12 Score=44.28 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=21.7
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+..+++.|+.||||||++..+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999988877654
No 399
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.91 E-value=0.25 Score=42.19 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=28.0
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~ 58 (432)
..|..+++.|+.||||||++..+...+....-..+..-.|.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~ 44 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG 44 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC
Confidence 45778999999999999998877665543322334444554
No 400
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.90 E-value=0.091 Score=47.32 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+..+.|.|++||||||++..+....
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478899999999999887766554
No 401
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.90 E-value=0.092 Score=49.07 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 014006 22 VVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~ 43 (432)
..+|.||||||||+++..+...
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999988777644
No 402
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=91.72 E-value=0.55 Score=43.79 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=20.7
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
......+++.|++|+||+.++..+....
T Consensus 149 a~~~~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 149 AKSKAPVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp HTSCSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hccchhheEEeCCCchHHHHHHHHHHhc
Confidence 3456678999999999997766554443
No 403
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.71 E-value=0.11 Score=45.70 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=21.1
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
....+++.||+|+|||+++..+....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999998888776654
No 404
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.71 E-value=0.13 Score=43.99 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999998776654
No 405
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=91.64 E-value=0.18 Score=49.12 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=20.4
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHh
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILH 42 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~ 42 (432)
..+.+++|.|+||||||+++..++.
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 3467889999999999988777664
No 406
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.64 E-value=0.28 Score=41.84 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=27.7
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCC-cEEEecccc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKS-GIIGVTQPR 58 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~-~~vl~~~P~ 58 (432)
.|..+++.|+.||||||++..+...+...+. ..++.-.|.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~ 42 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPG 42 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCC
Confidence 5788999999999999998877665543322 234444564
No 407
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.64 E-value=0.12 Score=44.18 Aligned_cols=23 Identities=39% Similarity=0.652 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999988776654
No 408
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.63 E-value=0.11 Score=44.67 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=21.5
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
....+++.|+.||||||++..+....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578899999999999998877655
No 409
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.63 E-value=0.12 Score=43.51 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 22 VVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
.+++.|+.||||||++..+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 578899999999999988876553
No 410
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.61 E-value=0.11 Score=43.26 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 22 VVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
.+++.|+.||||||++..+.....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999888776553
No 411
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.58 E-value=0.12 Score=43.93 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
....+|.||+|||||+++.++....
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3567889999999998887775544
No 412
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.53 E-value=0.11 Score=42.58 Aligned_cols=23 Identities=39% Similarity=0.444 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++.|+.||||||++..+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 57889999999999988877654
No 413
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.52 E-value=0.13 Score=43.46 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 014006 22 VVVVIGETGSGKSTQLSQILH 42 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~ 42 (432)
.+.|.|++||||||++..+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 578999999999999887766
No 414
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.45 E-value=0.18 Score=42.74 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=22.4
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+..+++.|+.||||||++..+....
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357789999999999999988776654
No 415
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.42 E-value=0.12 Score=46.08 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+.+++.||+|||||+++..+....
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHc
Confidence 448999999999999998887765
No 416
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.36 E-value=0.15 Score=42.87 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+..+++.|+.||||||++..+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999988776654
No 417
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.32 E-value=0.3 Score=44.65 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=22.4
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhh
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~ 43 (432)
+..|+.++|.||+|+|||+++..++..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345788999999999999888777764
No 418
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.25 E-value=0.28 Score=40.92 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46889999999999988776654
No 419
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.23 E-value=0.24 Score=53.62 Aligned_cols=79 Identities=8% Similarity=0.123 Sum_probs=65.4
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeec-CcccccccC
Q 014006 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTN-IAETSLTVD 290 (432)
Q Consensus 212 ~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~-~~~~Gidi~ 290 (432)
.+.+++|.+||+.-+++.++.+.+.+.. .++.+..+++..+..++....+.+.+|..+|+|+|. .+...+.+.
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~------~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~ 724 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFAN------WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 724 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTT------TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhc------CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCcccc
Confidence 4569999999999999999999876432 356788899999999988888888889999999994 555668888
Q ss_pred CeEEEE
Q 014006 291 GVVYVI 296 (432)
Q Consensus 291 ~v~~VI 296 (432)
++.+||
T Consensus 725 ~l~lvI 730 (1151)
T 2eyq_A 725 DLGLLI 730 (1151)
T ss_dssp SEEEEE
T ss_pred ccceEE
Confidence 888877
No 420
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.15 E-value=0.15 Score=45.46 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+.+++.||+|+|||+++..+....
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 348999999999999988887765
No 421
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.03 E-value=0.11 Score=47.02 Aligned_cols=44 Identities=9% Similarity=-0.006 Sum_probs=29.9
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCC-CCcEEEecccchhh
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYT-KSGIIGVTQPRRVA 61 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~-~~~~vl~~~P~~~l 61 (432)
+..| .+.|.||+|+|||+++.+++...... .+.+++++..-..+
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI 70 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh
Confidence 3456 78999999999998877776654332 25677776544333
No 422
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.01 E-value=0.21 Score=46.49 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=21.8
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+.+++.||+|+|||+++..+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999998888776654
No 423
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.00 E-value=0.14 Score=43.34 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 014006 22 VVVVIGETGSGKSTQLSQILH 42 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~ 42 (432)
.+.+.|+.||||||++..+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999887754
No 424
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.95 E-value=0.34 Score=49.87 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+-+++.||+|+|||.++..++...
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHh
Confidence 468899999999998888887765
No 425
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.94 E-value=0.12 Score=42.63 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=17.3
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+..+++.|+.||||||++..+....
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45688999999999999988776554
No 426
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=90.89 E-value=0.13 Score=48.15 Aligned_cols=23 Identities=39% Similarity=0.739 Sum_probs=19.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHh
Q 014006 20 NPVVVVIGETGSGKSTQLSQILH 42 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~ 42 (432)
....+|.|+||+|||+++.++..
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999988877765
No 427
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.88 E-value=0.17 Score=47.00 Aligned_cols=31 Identities=23% Similarity=0.092 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSG 50 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~ 50 (432)
+..+.+.|++|+||||++..+........+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~ 104 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHK 104 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCe
Confidence 4578899999999999999888755443333
No 428
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.78 E-value=0.17 Score=42.61 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+++.|+.||||||++..+....
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999988776654
No 429
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.70 E-value=0.16 Score=41.51 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+++.|+.||||||++..+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999988776654
No 430
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.68 E-value=0.16 Score=42.01 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+++.|+.||||||+...+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999988776654
No 431
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.64 E-value=0.39 Score=41.70 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=27.6
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCc-EEEecccc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG-IIGVTQPR 58 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~-~vl~~~P~ 58 (432)
..+..+++.|+.||||||++..+........-. .++.-.|.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~ 66 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG 66 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCC
Confidence 357889999999999999988776655433222 33334554
No 432
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.62 E-value=0.058 Score=45.94 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++.|+.||||||++..+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999998877655
No 433
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.59 E-value=0.1 Score=45.88 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+..+++.|++||||||++..+....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999988877654
No 434
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.58 E-value=0.2 Score=42.81 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+..+++.|+.||||||++..+....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999988877655
No 435
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.54 E-value=0.15 Score=45.97 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+++.||+|+|||+++..+....
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578889999999998888777655
No 436
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.52 E-value=0.2 Score=43.37 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=21.8
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+..+++.|++||||||++..+....
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45688999999999999988887655
No 437
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.51 E-value=0.073 Score=55.90 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=27.5
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCC
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHRHGYTKS 49 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~ 49 (432)
+..|+.+.|.||+||||||++..+........|
T Consensus 696 I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG 728 (986)
T 2iw3_A 696 CSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728 (986)
T ss_dssp EETTCEEEECSCCCHHHHHHHHHHTTSSCCSEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 467899999999999999999988887655443
No 438
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.46 E-value=0.18 Score=46.51 Aligned_cols=33 Identities=24% Similarity=0.084 Sum_probs=24.6
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRHGYTKSG 50 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~ 50 (432)
.++..+.+.|++|+||||++..++......++.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~ 86 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLK 86 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCe
Confidence 356788999999999999988887655433333
No 439
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.43 E-value=0.18 Score=41.93 Aligned_cols=24 Identities=46% Similarity=0.675 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 21 PVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+++.|+.||||||++..+....
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999988776654
No 440
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=90.43 E-value=0.16 Score=46.94 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHh
Q 014006 20 NPVVVVIGETGSGKSTQLSQILH 42 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~ 42 (432)
....+|.||||||||+++.++..
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34678899999999988887654
No 441
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.37 E-value=0.17 Score=44.71 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=20.6
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhh
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~ 43 (432)
....+++.|++||||||++..+...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999998877664
No 442
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=90.34 E-value=0.045 Score=49.69 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=23.3
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+.+|+.+.+.||+|+||||++..+....
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence 34578999999999999999998876543
No 443
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.24 E-value=0.17 Score=43.11 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999988776654
No 444
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.19 E-value=0.21 Score=40.46 Aligned_cols=23 Identities=35% Similarity=0.241 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999988776644
No 445
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.15 E-value=0.19 Score=42.22 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhh
Q 014006 21 PVVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~ 43 (432)
..+.|.|++||||||+...+...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 46889999999999998877654
No 446
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.03 E-value=0.34 Score=45.89 Aligned_cols=79 Identities=9% Similarity=0.069 Sum_probs=60.0
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecCcc----cc
Q 014006 211 EPEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAE----TS 286 (432)
Q Consensus 211 ~~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~~~----~G 286 (432)
..++++||.+|++.-+.+.++.+.+... .++.+..+||+.+..+|....+.+..|..+|+|+|+-.- .-
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~-------~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~ 134 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD-------EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK 134 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC-------SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc-------CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH
Confidence 4567999999999999999999988421 267799999999997776666666677789999997221 01
Q ss_pred cccCCeEEEE
Q 014006 287 LTVDGVVYVI 296 (432)
Q Consensus 287 idi~~v~~VI 296 (432)
++..++++||
T Consensus 135 ~~~~~~~~iV 144 (414)
T 3oiy_A 135 LSQKRFDFVF 144 (414)
T ss_dssp HTTCCCSEEE
T ss_pred hccccccEEE
Confidence 4556777766
No 447
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=89.98 E-value=0.054 Score=46.86 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=21.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhhcCCCCC
Q 014006 23 VVVIGETGSGKSTQLSQILHRHGYTKS 49 (432)
Q Consensus 23 ~ii~apTGsGKT~~~~~~~~~~~~~~~ 49 (432)
+.|.||+||||||++..+........+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~~G 56 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPDLT 56 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCC
Confidence 357799999999999988887665544
No 448
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.94 E-value=0.14 Score=45.45 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+.+++.||+|+|||+++..+....
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4568899999999998888776654
No 449
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.93 E-value=0.27 Score=54.74 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=53.6
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhhhHHHHHHHHHHhCCccCCeeeeeeeecccCCCCceEE
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVAAVSVARRVAQELGVRLGEEVGYAIRFEDRTSERTLIK 98 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l~~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 98 (432)
.|+.+++.||+|||||+++.+++......++.-+++..+ ++..+++. +.+|.....+++. .+
T Consensus 1081 ~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~--~~~~~~~~---~~~G~d~~~~~~~--------~~----- 1142 (1706)
T 3cmw_A 1081 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE--HALDPIYA---RKLGVDIDNLLCS--------QP----- 1142 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT--SCCCHHHH---HHTTCCGGGCEEE--------CC-----
T ss_pred CCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcc--cchHHHHH---HHhCCCHHHHhhc--------cc-----
Confidence 678899999999999988887776554444445555543 22233333 5666665555541 01
Q ss_pred EcCHHHHHHHHhcCCCCCCCcEEEEeCCC
Q 014006 99 YLTDGVLLREILSNPDLSPYSVIILDEAH 127 (432)
Q Consensus 99 v~T~~~l~~~l~~~~~l~~~~~vViDE~h 127 (432)
.|.++.++.+.....-..+.++++||++
T Consensus 1143 -~~~e~~l~~~~~~ar~~~~~~i~~d~~~ 1170 (1706)
T 3cmw_A 1143 -DTGEQALEICDALARSGAVDVIVVDSVA 1170 (1706)
T ss_dssp -SSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred -cchHHHHHHHHHHHHhcCCeEEEeCchH
Confidence 0244444444321112348899999976
No 450
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.91 E-value=0.28 Score=42.27 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=20.5
Q ss_pred HHhcCCEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 16 TVEQNPVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 16 ~i~~~~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
.+..|..+++.|+.||||||++..+...+.
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345788999999999999999887766553
No 451
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.88 E-value=0.2 Score=42.84 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHh
Q 014006 20 NPVVVVIGETGSGKSTQLSQILH 42 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~ 42 (432)
+..++|.|+.||||||++..+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999998887754
No 452
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=89.85 E-value=0.13 Score=43.44 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=20.5
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHH
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQIL 41 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~ 41 (432)
+.++..+++.|++|+|||+++..+.
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHh
Confidence 4467789999999999999887654
No 453
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.82 E-value=0.2 Score=43.08 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999988776654
No 454
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=89.71 E-value=0.22 Score=47.57 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=23.3
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
..++.++|.||+|||||+++..+.....
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3578899999999999999888877553
No 455
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.68 E-value=0.22 Score=41.40 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999988776644
No 456
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.67 E-value=0.26 Score=42.70 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=21.0
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
....+.|.||+||||||++..+....
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999988777654
No 457
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.52 E-value=0.23 Score=41.32 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++.|++|+|||+++..+....
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57889999999999998887654
No 458
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=89.39 E-value=0.35 Score=46.80 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=24.3
Q ss_pred HHHHH--hcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 13 IVETV--EQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 13 i~~~i--~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
+++.+ ....++++.||+|+|||+++..+....
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred HHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 44444 345689999999999998887776654
No 459
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.32 E-value=0.25 Score=41.42 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++.|++|+|||+++..+....
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 46888999999999998887653
No 460
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=89.31 E-value=0.26 Score=47.48 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
++.+++.||+|+|||+++..+....
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHh
Confidence 3589999999999998887776654
No 461
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.25 E-value=0.46 Score=40.58 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=27.6
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEeccc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQP 57 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P 57 (432)
.|..+++.|+.||||||++..+...... ...+.-.|
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~---~~~~~~ep 39 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP---NCKLLKFP 39 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS---SEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc---cceEEEec
Confidence 6889999999999999999888776643 23444556
No 462
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=89.23 E-value=0.24 Score=46.43 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
...+++.||+|+|||+++..+....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999998888776654
No 463
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=88.77 E-value=0.22 Score=46.27 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=19.4
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHh
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILH 42 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~ 42 (432)
+| .+++.||+|||||+++..+..
T Consensus 26 ~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 26 EG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SE-EEEEECCTTSSHHHHHHHHHH
T ss_pred CC-eEEEECCCCCChhHHHHHHHH
Confidence 44 788999999999988887765
No 464
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.73 E-value=0.21 Score=45.64 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+|.||||||||+++..+....
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTS
T ss_pred cEEEECCCCCcHHHHHHHHHHHh
Confidence 88999999999999988877543
No 465
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=88.71 E-value=0.21 Score=45.40 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=21.6
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHHHHhh
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~~~~~ 43 (432)
+..+..+++.||+|+|||+++..++..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 345677899999999999888777654
No 466
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=88.55 E-value=0.19 Score=51.18 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=19.8
Q ss_pred HhcCCEEEEEcCCCCCHHHHHHH
Q 014006 17 VEQNPVVVVIGETGSGKSTQLSQ 39 (432)
Q Consensus 17 i~~~~~~ii~apTGsGKT~~~~~ 39 (432)
+..|+.+.|.||+||||||++..
T Consensus 345 I~~Ge~vaIiGpnGsGKSTLl~~ 367 (670)
T 3ux8_A 345 IPLGTFVAVTGVSGSGKSTLVNE 367 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHHTT
T ss_pred ecCCCEEEEEeeCCCCHHHHHHH
Confidence 45789999999999999988753
No 467
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=88.41 E-value=0.29 Score=50.53 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.6
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhh
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~ 43 (432)
+|+.++|.||+||||||++..+...
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 5789999999999999998877653
No 468
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.37 E-value=0.33 Score=38.64 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 014006 22 VVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~ 43 (432)
.+++.|++|+|||+++..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4788999999999998888754
No 469
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.32 E-value=0.83 Score=38.59 Aligned_cols=38 Identities=26% Similarity=0.450 Sum_probs=25.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPR 58 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~ 58 (432)
++.+++.|+-||||||++..+...+.. +...+..-.|.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~~~eP~ 39 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPG 39 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEESST
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHC-CCCEEEeeCCC
Confidence 457888999999999998877766532 22333344564
No 470
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.27 E-value=0.33 Score=40.64 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhh
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~ 43 (432)
+-.+.+.|+.||||||+...+...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 346788999999999998877654
No 471
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.25 E-value=0.31 Score=46.41 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=21.8
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+-+++.||+|+|||.++.+++...
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 35789999999999998888887665
No 472
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.02 E-value=0.38 Score=41.68 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=22.2
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+..+.+.|+.||||||++..+....
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999988776544
No 473
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.02 E-value=0.35 Score=38.60 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 014006 22 VVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~ 43 (432)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4788999999999998888754
No 474
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.99 E-value=0.33 Score=46.16 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=21.6
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+-+++.||+|+|||.++.+++...
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999998888887655
No 475
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=87.93 E-value=0.72 Score=39.98 Aligned_cols=75 Identities=12% Similarity=0.143 Sum_probs=54.1
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeec-----Ccc-c
Q 014006 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTN-----IAE-T 285 (432)
Q Consensus 212 ~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~-----~~~-~ 285 (432)
.+..+||.+||++-+.++++.+.+.... .++.+..++|+.+...+...+.. ..+|+|+|+ .+. .
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~ 170 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRA------CRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECG 170 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHH------TTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhh------cCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcC
Confidence 3558999999999999998888775443 36678889999987766544321 367999996 222 2
Q ss_pred ccccCCeEEEE
Q 014006 286 SLTVDGVVYVI 296 (432)
Q Consensus 286 Gidi~~v~~VI 296 (432)
.+++.++++||
T Consensus 171 ~~~~~~~~~lV 181 (242)
T 3fe2_A 171 KTNLRRTTYLV 181 (242)
T ss_dssp SCCCTTCCEEE
T ss_pred CCCcccccEEE
Confidence 35677887766
No 476
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.86 E-value=0.31 Score=39.72 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=20.2
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhh
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~ 43 (432)
++..+++.|++|+|||+++..+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456889999999999999888654
No 477
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.85 E-value=0.35 Score=38.81 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 014006 22 VVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~ 43 (432)
.+++.|++|+|||+++..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5788899999999999888753
No 478
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=87.81 E-value=0.7 Score=38.77 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=26.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhhcCCCCCcEEEecccchhh
Q 014006 23 VVVIGETGSGKSTQLSQILHRHGYTKSGIIGVTQPRRVA 61 (432)
Q Consensus 23 ~ii~apTGsGKT~~~~~~~~~~~~~~~~~vl~~~P~~~l 61 (432)
+++.|.-||||||++..+...+...+...++.-.|....
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~ 41 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTE 41 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCc
Confidence 567899999999998877665543333344555675433
No 479
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=87.78 E-value=0.33 Score=49.91 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
|+.++|.||+||||||++..+....
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 7899999999999999988776543
No 480
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=87.77 E-value=0.49 Score=46.52 Aligned_cols=39 Identities=28% Similarity=0.452 Sum_probs=26.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcCC---CCCcEEEecccc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHGY---TKSGIIGVTQPR 58 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~~---~~~~~vl~~~P~ 58 (432)
..+++|.|.||||||+++..++..... ....+++++-|.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 467899999999999777766554322 223456665554
No 481
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=87.75 E-value=1 Score=38.88 Aligned_cols=76 Identities=11% Similarity=0.095 Sum_probs=46.1
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeec-----Cccc-
Q 014006 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTN-----IAET- 285 (432)
Q Consensus 212 ~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~-----~~~~- 285 (432)
.+.++||.+|+++-+.+.++.+.+.... .+..+...+|+.+.... .+.+..+..+|+|+|+ .+.+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~------~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp~~l~~~l~~~ 167 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDY------MGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTPGRVFDMLNRR 167 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT------TTCCEEEECC----------------CCCSEEEECHHHHHHHHHTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhh------cCceEEEEECCCchHHH---HHHHhcCCCCEEEECHHHHHHHHHhC
Confidence 3568999999999999999988875322 25567778887654433 3344556678999994 3333
Q ss_pred ccccCCeEEEE
Q 014006 286 SLTVDGVVYVI 296 (432)
Q Consensus 286 Gidi~~v~~VI 296 (432)
.++..++++||
T Consensus 168 ~~~~~~~~~lV 178 (237)
T 3bor_A 168 YLSPKWIKMFV 178 (237)
T ss_dssp SSCSTTCCEEE
T ss_pred CcCcccCcEEE
Confidence 35667777766
No 482
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=87.70 E-value=0.6 Score=41.16 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 014006 22 VVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~ 43 (432)
.+++.||+|+|||.++..++..
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999888777654
No 483
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.66 E-value=0.38 Score=39.85 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 014006 22 VVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~ 43 (432)
.+++.|++|+|||+++..+...
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7889999999999999888764
No 484
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=87.65 E-value=0.38 Score=42.15 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+.|.|+.||||||++..+....
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999988776644
No 485
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.60 E-value=0.36 Score=46.02 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=21.9
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..+-+++.||+|+|||.++..++...
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 35789999999999998888887765
No 486
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.55 E-value=0.37 Score=38.85 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 014006 22 VVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~ 43 (432)
.+++.|++|+|||+++..+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5788999999999999888653
No 487
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=87.42 E-value=4 Score=33.91 Aligned_cols=76 Identities=8% Similarity=0.094 Sum_probs=52.7
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEecCCCCHHHHhccCCCCCCCccEEEEeecC-----cc-c
Q 014006 212 PEGDVLIFMTGQDDIEKLVSKLEDKIRSLDEGSCMDAVILPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI-----AE-T 285 (432)
Q Consensus 212 ~~~~~lvF~~t~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~h~~l~~~~r~~~~~~f~~g~~~ilvaT~~-----~~-~ 285 (432)
...++||.+|++.-+++.++.+.+..... ++..+..++|+.+..++..... +..+|+|+|.- +. .
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~ 140 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHM-----GGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKG 140 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTS-----SSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhc-----CCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcC
Confidence 34589999999999999999887753321 2567888999988766544332 35689999971 22 2
Q ss_pred ccccCCeEEEE
Q 014006 286 SLTVDGVVYVI 296 (432)
Q Consensus 286 Gidi~~v~~VI 296 (432)
.+++.++++||
T Consensus 141 ~~~~~~~~~lV 151 (206)
T 1vec_A 141 VAKVDHVQMIV 151 (206)
T ss_dssp CSCCTTCCEEE
T ss_pred CcCcccCCEEE
Confidence 34566777766
No 488
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=87.40 E-value=0.41 Score=38.47 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++.|++|+|||+++..+....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57889999999999998887643
No 489
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.37 E-value=0.4 Score=49.79 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=23.0
Q ss_pred hcCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 18 EQNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 18 ~~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
..++.+++.||+|||||+++..+....
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 457889999999999999988887654
No 490
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=87.35 E-value=0.66 Score=44.26 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++++.||+|+|||+++..+....
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4678999999999999888777665
No 491
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.33 E-value=0.64 Score=42.80 Aligned_cols=36 Identities=28% Similarity=0.510 Sum_probs=24.5
Q ss_pred hhHHHHHHHH----hcCCE--EEEEcCCCCCHHHHHHHHHhh
Q 014006 8 QYEETIVETV----EQNPV--VVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 8 ~~q~~i~~~i----~~~~~--~ii~apTGsGKT~~~~~~~~~ 43 (432)
..-+.++..+ ..|+. +++.|+.|+||||++..+...
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3444455544 35655 899999999999877655543
No 492
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=87.25 E-value=0.47 Score=41.11 Aligned_cols=23 Identities=43% Similarity=0.704 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++.|++|+|||+++..++...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 67899999999999998887644
No 493
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.19 E-value=0.42 Score=38.36 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+++.|++|+|||+++..+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47888999999999988887543
No 494
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.16 E-value=0.39 Score=40.36 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhc
Q 014006 22 VVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
.+.|.|+.||||||++..+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 67899999999999988776654
No 495
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=87.10 E-value=0.49 Score=41.54 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHhhcC
Q 014006 20 NPVVVVIGETGSGKSTQLSQILHRHG 45 (432)
Q Consensus 20 ~~~~ii~apTGsGKT~~~~~~~~~~~ 45 (432)
...+++.|..|+||||++..++....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 34678899999999998888876655
No 496
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=87.06 E-value=0.43 Score=38.83 Aligned_cols=22 Identities=23% Similarity=0.673 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 014006 22 VVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~ 43 (432)
.+++.|++|+|||+++..+...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999887754
No 497
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=87.05 E-value=0.42 Score=38.37 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 014006 22 VVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~ 43 (432)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4788899999999998888753
No 498
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.04 E-value=0.44 Score=38.02 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 014006 22 VVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 22 ~~ii~apTGsGKT~~~~~~~~~ 43 (432)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999998877653
No 499
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.01 E-value=0.4 Score=43.18 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHhh
Q 014006 21 PVVVVIGETGSGKSTQLSQILHR 43 (432)
Q Consensus 21 ~~~ii~apTGsGKT~~~~~~~~~ 43 (432)
..+++.|++||||||++..+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36789999999999998877653
No 500
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=86.97 E-value=0.32 Score=44.78 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=21.2
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHhhc
Q 014006 19 QNPVVVVIGETGSGKSTQLSQILHRH 44 (432)
Q Consensus 19 ~~~~~ii~apTGsGKT~~~~~~~~~~ 44 (432)
....+++.||+|+|||+++..+....
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CCceEEEECCCCccHHHHHHHHHHhC
Confidence 34569999999999998888777654
Done!