BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014007
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 132/292 (45%), Gaps = 35/292 (11%)
Query: 93 FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152
FNQD C T F IYN P + I ++ G I ML R N +A V +
Sbjct: 22 FNQDQSCLIVSTPKSFDIYNVHPLKRIMSQEMPDAGTI---RMLHRTNYIAFVSTKKELL 78
Query: 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET 212
+ IWDD + + I + + V+ + L R+ I+V I ++ F + ++I
Sbjct: 79 H------IWDDVKKQDITRVKLDAAVKDLFLSREFIVVSQGDVISIFKFGNP--WNKITE 130
Query: 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK------FIMAHDSRIACFAL 266
G+C + G L++ GQ+ V + + + AH + + L
Sbjct: 131 DIKFGGVCEFANG---LLVYSNEFNLGQIHVTRLQTDAEQVVGKGVLVKAHANPVKMVRL 187
Query: 267 TQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT 326
+ G ++AT S GTL+R+F T +G L++E RRG DR I + +S + LAV SDK T
Sbjct: 188 NRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWSPDGSKLAVVSDKWT 247
Query: 327 VHVFNLKVNSGSARSEPRXXXXXXXXXXXXXFIKGVLPKYFSSEWSVAQFRL 378
+HVF + ++ + R + + KYF SEWS+ F+L
Sbjct: 248 LHVFEVFNDAENKRHVLK---------------DWINIKYFQSEWSICNFKL 284
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 134/304 (44%), Gaps = 48/304 (15%)
Query: 93 FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152
FNQD C T F IYN P I ++ + V ML R N +A V G +
Sbjct: 27 FNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRH---LSKVRMLHRTNYVAFVTGVKEV- 82
Query: 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET 212
V IWDD + + + + + V+ + L R+ I+V I V+ F + +I
Sbjct: 83 -----VHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNP--WKRITD 135
Query: 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-----------------RTKFIM 255
G+C S G L++ GQ+ + S + I
Sbjct: 136 DIRFGGVCEFSNG---LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK 192
Query: 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA 315
AH + I L + ++AT S GT++R+F T DG L++E RRG DRA++ + +S++
Sbjct: 193 AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG 252
Query: 316 QWLAVSSDKGTVHVFNLKVNSGSARSEPRXXXXXXXXXXXXXFIKGVLP-KYFSSEWSVA 374
LAV SDK T+HVF + + + R +KG + KYF SEWS+
Sbjct: 253 SKLAVVSDKWTLHVFEIFNDQDNKRHA----------------LKGWINMKYFQSEWSLC 296
Query: 375 QFRL 378
F+L
Sbjct: 297 NFKL 300
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 244 EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR 303
H K + AH S + A + DGQ +A++S T V+++N +G LLQ +
Sbjct: 2 SHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLT--GHS 57
Query: 304 AEIYSLAFSSNAQWLAVSSDKGTVHVFN 331
+ ++ +AFS + Q +A +SD TV ++N
Sbjct: 58 SSVWGVAFSPDGQTIASASDDKTVKLWN 85
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311
+ + H S + A + DGQ +A++S T V+++N +G LLQ + + ++ +AF
Sbjct: 92 QTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLT--GHSSSVWGVAF 147
Query: 312 SSNAQWLAVSSDKGTVHVFN 331
S + Q +A +SD TV ++N
Sbjct: 148 SPDGQTIASASDDKTVKLWN 167
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311
+ + H S + A + DGQ +A++S T V+++N +G LLQ + + ++ +AF
Sbjct: 133 QTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLT--GHSSSVWGVAF 188
Query: 312 SSNAQWLAVSSDKGTVHVFN 331
S + Q +A +SD TV ++N
Sbjct: 189 SPDGQTIASASDDKTVKLWN 208
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311
+ + H S + A + DGQ +A++S T V+++N +G LLQ + + ++ +AF
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLT--GHSSSVWGVAF 434
Query: 312 SSNAQWLAVSSDKGTVHVFN 331
S + Q +A +SD TV ++N
Sbjct: 435 SPDDQTIASASDDKTVKLWN 454
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311
+ + H S + A DGQ +A++S T V+++N +G LLQ + + ++ +AF
Sbjct: 256 QTLTGHSSSVNGVAFRPDGQTIASASDDKT-VKLWN-RNGQLLQTLT--GHSSSVWGVAF 311
Query: 312 SSNAQWLAVSSDKGTVHVFN 331
S + Q +A +SD TV ++N
Sbjct: 312 SPDGQTIASASDDKTVKLWN 331
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311
+ + H S + A + DGQ +A++S T V+++N +G LLQ + + + +AF
Sbjct: 174 QTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLT--GHSSSVRGVAF 229
Query: 312 SSNAQWLAVSSDKGTVHVFN 331
S + Q +A +SD TV ++N
Sbjct: 230 SPDGQTIASASDDKTVKLWN 249
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311
+ + H S + A + DGQ +A++S T V+++N +G LLQ + + + +AF
Sbjct: 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLT--GHSSSVRGVAF 516
Query: 312 SSNAQWLAVSSDKGTVHVFN 331
S + Q +A +SD TV ++N
Sbjct: 517 SPDGQTIASASDDKTVKLWN 536
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311
+ + H S + A + DGQ +A++S T V+++N +G LQ + + ++ +AF
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLWN-RNGQHLQTLT--GHSSSVWGVAF 352
Query: 312 SSNAQWLAVSSDKGTVHVFN 331
S + Q +A +SD TV ++N
Sbjct: 353 SPDGQTIASASDDKTVKLWN 372
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311
+ + H S + A + D Q +A++S T V+++N +G LLQ + + + +AF
Sbjct: 420 QTLTGHSSSVWGVAFSPDDQTIASASDDKT-VKLWN-RNGQLLQTLT--GHSSSVRGVAF 475
Query: 312 SSNAQWLAVSSDKGTVHVFN 331
S + Q +A +SD TV ++N
Sbjct: 476 SPDGQTIASASDDKTVKLWN 495
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 231 LVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289
++ G V+V A+ R + H + + ++ DG L A+S G + R+++
Sbjct: 168 VIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDG-VARLWDLT 226
Query: 290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333
G L E+ GA I + FS N W+ +++KG + +F+L+
Sbjct: 227 KGEALSEMAAGA---PINQICFSPNRYWMCAATEKG-IRIFDLE 266
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA 315
AH+S + +++ +G+ +AT L+ I++ L+ T Q R + I +AF+
Sbjct: 211 AHESNVNHLSISPNGKYIATGGKDKKLL-IWDILNLTYPQ--REFDAGSTINQIAFNPKL 267
Query: 316 QWLAVSSDKGTVHVFNLKVNS 336
QW+AV +D+G V +FNL S
Sbjct: 268 QWVAVGTDQG-VKIFNLMTQS 287
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311
K + H+ ++ AL+Q+ +SS TL R+++ GT + R ++E+YS+AF
Sbjct: 70 KALTGHNHFVSDLALSQENCFAISSSWDKTL-RLWDLRTGTTYK--RFVGHQSEVYSVAF 126
Query: 312 SSNAQWLAVSSDKGTVHVFNL 332
S + + + + + + ++N+
Sbjct: 127 SPDNRQILSAGAEREIKLWNI 147
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314
+ H+S I + DG L+A++ G ++ ++N + + + E++SLAFS N
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIM-LWNLAAKKAMYTLSA---QDEVFSLAFSPN 248
Query: 315 AQWLAVSSDKGTVHVFNL 332
WLA ++ G + VF+L
Sbjct: 249 RYWLAAATATG-IKVFSL 265
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314
+ H+S I + DG L+A++ G ++ ++N + + + E++SLAFS N
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIM-LWNLAAKKAMYTLSA---QDEVFSLAFSPN 248
Query: 315 AQWLAVSSDKGTVHVFNL 332
WLA ++ G + VF+L
Sbjct: 249 RYWLAAATATG-IKVFSL 265
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314
+ H+S I + DG L+A++ G ++ ++N + + + E++SLAFS N
Sbjct: 187 IGHNSNINTLTASPDGTLIASAGKDGEIM-LWNLAAKKAMYTLSA---QDEVFSLAFSPN 242
Query: 315 AQWLAVSSDKGTVHVFNL 332
WLA ++ G + VF+L
Sbjct: 243 RYWLAAATATG-IKVFSL 259
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314
+ H+S I + DG L+A++ G ++ ++N + + + E++SLAFS N
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIM-LWNLAAKKAMYTLSA---QDEVFSLAFSPN 248
Query: 315 AQWLAVSSDKGTVHVFNL 332
WLA ++ G + VF+L
Sbjct: 249 RYWLAAATATG-IKVFSL 265
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314
+ H+S I + DG L+A++ G ++ ++N + + + E++SLAFS N
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIM-LWNLAAKKAMYTLSA---QDEVFSLAFSPN 248
Query: 315 AQWLAVSSDKGTVHVFNL 332
WLA ++ G + VF+L
Sbjct: 249 RYWLAAATATG-IKVFSL 265
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314
+ H+S I + DG L+A++ G + ++N L D E++SLAFS N
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGE-IXLWN-LAAKKAXYTLSAQD--EVFSLAFSPN 248
Query: 315 AQWLAVSSDKGTVHVFNL 332
WLA ++ G + VF+L
Sbjct: 249 RYWLAAATATG-IKVFSL 265
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313
I AH+ + C A + D + +AT S V+I+N++ G L+ +++ SS
Sbjct: 659 IKAHEDEVLCCAFSTDDRFIATCSVDKK-VKIWNSMTGELVHTYDEHSEQVNCCHFTNSS 717
Query: 314 NAQWLAVSSDKGTVHVFNL 332
+ LA S + +++L
Sbjct: 718 HHLLLATGSSDCFLKLWDL 736
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
+ H+ + C A + D LLAT G +RI+N +G LL
Sbjct: 1129 LRGHNGCVRCSAFSVDSTLLATGDDNGE-IRIWNVSNGELLH 1169
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA 315
H +C ++ DG L T T VR ++ +G LQ+ ++I+SL +
Sbjct: 181 GHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLREGRQLQQHDF---TSQIFSLGYCPTG 236
Query: 316 QWLAVSSDKGTVHVFNLK 333
+WLAV + V V ++
Sbjct: 237 EWLAVGMESSNVEVLHVN 254
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
K T+ ++++S +C AL+ D Q +A + + V ++ L G + EV+ AEI S
Sbjct: 441 KLTEVPISYNS--SCVALSNDKQFVAVGG-QDSKVHVYK-LSGASVSEVKTIVHPAEITS 496
Query: 309 LAFSSNAQWLAVSSDK 324
+AFS+N +L V++D+
Sbjct: 497 VAFSNNGAFL-VATDQ 511
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 273 LATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332
+A SS+ +R+++ +G ++ + G + ++LAFS ++Q+LA + G V++F +
Sbjct: 94 IAASSSLDAHIRLWDLENGKQIKSIDAGP--VDAWTLAFSPDSQYLATGTHVGKVNIFGV 151
Query: 333 K 333
+
Sbjct: 152 E 152
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
+ H+ + C A + DG LLAT G +RI+N DG LL
Sbjct: 1123 LKGHNGCVRCSAFSLDGILLATGDDNGE-IRIWNVSDGQLLH 1163
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 17/150 (11%)
Query: 187 RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY 246
+II + ++F K + I+ A+ K L + S+ ++V ++
Sbjct: 986 KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED-------------SVIQVWNW 1032
Query: 247 ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI 306
+ F+ AH + F L QD +LL+ S GT V+++N + G + ++ + +
Sbjct: 1033 QTGDYVFLQAHQETVKDFRLLQDSRLLSW-SFDGT-VKVWNVITGRIERDFT--CHQGTV 1088
Query: 307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336
S A SS+A + +S T +++ + S
Sbjct: 1089 LSCAISSDATKFSSTSADKTAKIWSFDLLS 1118
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313
I AH+ + C A + D +AT S V+I+++ G L+ +++ S
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKK-VKIWDSATGKLVHTYDEHSEQVNCCHFTNKS 711
Query: 314 NAQWLAVSSDKGTVHVFNL 332
N LA S+ + +++L
Sbjct: 712 NHLLLATGSNDFFLKLWDL 730
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
+ H+ + C A + DG LLAT G +RI+N DG LL
Sbjct: 1130 LKGHNGCVRCSAFSLDGILLATGDDNGE-IRIWNVSDGQLLH 1170
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 17/150 (11%)
Query: 187 RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY 246
+II + ++F K + I+ A+ K L + S+ ++V ++
Sbjct: 993 KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE-------------DSVIQVWNW 1039
Query: 247 ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI 306
+ F+ AH + F L QD +LL+ S GT V+++N + G + ++ + +
Sbjct: 1040 QTGDYVFLQAHQETVKDFRLLQDSRLLSW-SFDGT-VKVWNVITGRIERDFT--CHQGTV 1095
Query: 307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336
S A SS+A + +S T +++ + S
Sbjct: 1096 LSCAISSDATKFSSTSADKTAKIWSFDLLS 1125
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313
I AH+ + C A + D +AT S V+I+++ G L+ +++ S
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKK-VKIWDSATGKLVHTYDEHSEQVNCCHFTNKS 718
Query: 314 NAQWLAVSSDKGTVHVFNL 332
N LA S+ + +++L
Sbjct: 719 NHLLLATGSNDFFLKLWDL 737
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
K K + AH ++ +DG L+ +SS G L RI++T G L+ + D +
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSF 203
Query: 309 LAFSSNAQWLAVSSDKGTVHVFN 331
+ FS N +++ ++ T+ +++
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWD 226
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 203 DLKLLHQIETIANPKGLCAVSQ----GVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAH 257
DL+ ++ T ++ +C ++ G L+L G V + + R + H
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLL--AGYDDFNCNVWDALKADRAGVLAGH 311
Query: 258 DSRIACFALTQDGQLLATSSTKGTLVRIFN 287
D+R++C +T DG +AT S + ++I+N
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWD-SFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 203 DLKLLHQIETIANPKGLCAVSQ----GVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAH 257
DL+ ++ T ++ +C ++ G L+L G V + + R + H
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLL--AGYDDFNCNVWDALKADRAGVLAGH 311
Query: 258 DSRIACFALTQDGQLLATSSTKGTLVRIFN 287
D+R++C +T DG +AT S + ++I+N
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWD-SFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 203 DLKLLHQIETIANPKGLCAVSQ----GVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAH 257
DL+ ++ T ++ +C ++ G L+L G V + + R + H
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLL--AGYDDFNCNVWDALKADRAGVLAGH 311
Query: 258 DSRIACFALTQDGQLLATSSTKGTLVRIFN 287
D+R++C +T DG +AT S + ++I+N
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWD-SFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 203 DLKLLHQIETIANPKGLCAVSQ----GVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAH 257
DL+ ++ T ++ +C ++ G L+L G V + + R + H
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLL--AGYDDFNCNVWDALKADRAGVLAGH 311
Query: 258 DSRIACFALTQDGQLLATSSTKGTLVRIFN 287
D+R++C +T DG +AT S + ++I+N
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWD-SFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 248 SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287
+ R + HD+R++C +T DG +AT S + ++I+N
Sbjct: 313 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD-SFLKIWN 351
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311
K + AH ++ +DG L+ +SS G L RI++T G L+ + D + + F
Sbjct: 167 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSFVKF 224
Query: 312 SSNAQWLAVSSDKGTVHVFN 331
S N +++ ++ T+ +++
Sbjct: 225 SPNGKYILAATLDNTLKLWD 244
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311
K + AH ++ +DG L+ +SS G L RI++T G L+ + D + + F
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSFVKF 222
Query: 312 SSNAQWLAVSSDKGTVHVFN 331
S N +++ ++ T+ +++
Sbjct: 223 SPNGKYILAATLDNTLKLWD 242
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
K K + AH ++ +DG L+ +SS G L RI++T G L+ + D +
Sbjct: 136 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSF 193
Query: 309 LAFSSNAQWLAVSSDKGTVHVFN 331
+ FS N +++ ++ T+ +++
Sbjct: 194 VKFSPNGKYILAATLDNTLKLWD 216
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 74/170 (43%), Gaps = 18/170 (10%)
Query: 132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-RCIGELSFRSEVRSVKL--RRDRI 188
V + +R + L L GG D N V IWD S + + + V++V + +
Sbjct: 220 VCGLAWRSDGLQLASGGND-----NVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNL 274
Query: 189 IVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244
+ ++++I +N A ++ ++ + L ++ G + +
Sbjct: 275 LATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHS--KEIMSTHGFPDNNLSIW 332
Query: 245 HYASK---RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291
Y+S + I AHD+R+ AL+ DG++L+T+++ L + + DG
Sbjct: 333 SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENL-KFWRVYDG 381
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
K K + AH ++ +DG L+ +SS G L RI++T G L+ + D +
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSF 203
Query: 309 LAFSSNAQWLAVSSDKGTVHVFN 331
+ FS N +++ ++ T+ +++
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWD 226
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
K K + AH ++ +DG L+ +SS G L RI++T G L+ + D +
Sbjct: 139 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSF 196
Query: 309 LAFSSNAQWLAVSSDKGTVHVFN 331
+ FS N +++ ++ T+ +++
Sbjct: 197 VKFSPNGKYILAATLDNTLKLWD 219
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
K K + AH ++ +DG L+ +SS G L RI++T G L+ + D +
Sbjct: 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSF 197
Query: 309 LAFSSNAQWLAVSSDKGTVHVFN 331
+ FS N +++ ++ T+ +++
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWD 220
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
K K + AH ++ +DG L+ +SS G L RI++T G L+ + D +
Sbjct: 157 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSF 214
Query: 309 LAFSSNAQWLAVSSDKGTVHVFN 331
+ FS N +++ ++ T+ +++
Sbjct: 215 VKFSPNGKYILAATLDNTLKLWD 237
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
K K + AH ++ +DG L+ +SS G L RI++T G L+ + D +
Sbjct: 141 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSF 198
Query: 309 LAFSSNAQWLAVSSDKGTVHVFN 331
+ FS N +++ ++ T+ +++
Sbjct: 199 VKFSPNGKYILAATLDNTLKLWD 221
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
K K + AH ++ +DG L+ +SS G L RI++T G L+ + D +
Sbjct: 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSF 197
Query: 309 LAFSSNAQWLAVSSDKGTVHVFN 331
+ FS N +++ ++ T+ +++
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWD 220
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
K K + AH ++ +DG L+ +SS G L RI++T G L+ + D +
Sbjct: 145 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSF 202
Query: 309 LAFSSNAQWLAVSSDKGTVHVFN 331
+ FS N +++ ++ T+ +++
Sbjct: 203 VKFSPNGKYILAATLDNTLKLWD 225
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
K K + AH ++ +DG L+ +SS G L RI++T G L+ + D +
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSF 203
Query: 309 LAFSSNAQWLAVSSDKGTVHVFN 331
+ FS N +++ ++ T+ +++
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWD 226
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311
K + AH ++ +DG L+ +SS G L RI++T G L+ + D + + F
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSFVKF 203
Query: 312 SSNAQWLAVSSDKGTVHVFN 331
S N +++ ++ T+ +++
Sbjct: 204 SPNGKYILAATLDNTLKLWD 223
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
K K + AH ++ +DG L+ +SS G L RI++T G L+ + D +
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSF 200
Query: 309 LAFSSNAQWLAVSSDKGTVHVFN 331
+ FS N +++ ++ T+ +++
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWD 223
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
K K + AH ++ +DG L+ +SS G L RI++T G L+ + D +
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSF 200
Query: 309 LAFSSNAQWLAVSSDKGTVHVFN 331
+ FS N +++ ++ T+ +++
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWD 223
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289
+L P L + ++ VE + S + H S + C + DG+ LAT K T +++
Sbjct: 43 ILYNPALPR-EIDVELHKS------LDHTSVVCCVKFSNDGEYLATGCNKTT--QVYRVS 93
Query: 290 DGTLLQEVRRGADRAE------------------IYSLAFSSNAQWLAVSSDKGTVHVFN 331
DG+L+ R D A I S+ FS + ++LA ++ + +++
Sbjct: 94 DGSLV--ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 151
Query: 332 LK 333
++
Sbjct: 152 IE 153
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
K K + AH ++ +DG L+ +SS G L RI++T G L+ + D +
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSF 200
Query: 309 LAFSSNAQWLAVSSDKGTVHVFN 331
+ FS N +++ ++ T+ +++
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWD 223
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311
K + AH ++ +DG L+ +SS G L RI++T G L+ + D + + F
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSFVKF 203
Query: 312 SSNAQWLAVSS 322
S N +++ ++
Sbjct: 204 SPNGKYILAAT 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,170,377
Number of Sequences: 62578
Number of extensions: 412543
Number of successful extensions: 821
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 764
Number of HSP's gapped (non-prelim): 62
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)